locus-tag class description BF89_1 PF01039 Carboxyl transferase domain BF89_100 PF07883 Cupin domain BF89_100 PF01381 Helix-turn-helix BF89_1001 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF89_1001 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF89_1002 PF05389 Negative regulator of genetic competence (MecA) BF89_1003 PF02310 B12 binding domain BF89_1003 PF02607 B12 binding domain BF89_1003 PF13411 MerR HTH family regulatory protein BF89_1004 PF00149 Calcineurin-like phosphoesterase BF89_1006 PF02517 CPBP intramembrane metalloprotease BF89_1007 PF00270 DEAD/DEAH box helicase BF89_1007 PF00271 Helicase conserved C-terminal domain BF89_1008 PF14493 Helix-turn-helix domain BF89_101 PF01810 LysE type translocator BF89_1010 PF12822 ECF transporter, substrate-specific component BF89_1013 PF01923 Cobalamin adenosyltransferase BF89_1014 PF00672 HAMP domain BF89_1014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1014 PF18698 Histidine kinase sensor domain BF89_1014 PF00512 His Kinase A (phospho-acceptor) domain BF89_1014 PF00989 PAS fold BF89_1015 PF00486 Transcriptional regulatory protein, C terminal BF89_1015 PF00072 Response regulator receiver domain BF89_1016 PF01578 Cytochrome C assembly protein BF89_1017 PF05140 ResB-like family BF89_1018 PF00578 AhpC/TSA family BF89_1019 PF00849 RNA pseudouridylate synthase BF89_1019 PF01479 S4 domain BF89_1020 PF07670 Nucleoside recognition BF89_1021 PF07670 Nucleoside recognition BF89_1022 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_1022 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_1023 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF89_1023 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF89_1026 PF09924 Uncharacterised conserved protein (DUF2156) BF89_1026 PF03706 Lysylphosphatidylglycerol synthase TM region BF89_1029 PF01048 Phosphorylase superfamily BF89_1030 PF00512 His Kinase A (phospho-acceptor) domain BF89_1030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1030 PF16736 Single Cache-like BF89_1030 PF00989 PAS fold BF89_1031 PF00589 Phage integrase family BF89_1033 PF01904 Protein of unknown function DUF72 BF89_1034 PF00512 His Kinase A (phospho-acceptor) domain BF89_1034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1034 PF00989 PAS fold BF89_1037 PF00912 Transglycosylase BF89_1037 PF00905 Penicillin binding protein transpeptidase domain BF89_1038 PF01865 Protein of unknown function DUF47 BF89_1039 PF01384 Phosphate transporter family BF89_104 PF00005 ABC transporter BF89_104 PF00664 ABC transporter transmembrane region BF89_1040 PF01925 Sulfite exporter TauE/SafE BF89_1043 PF00042 Globin BF89_1043 PF00175 Oxidoreductase NAD-binding domain BF89_1043 PF00970 Oxidoreductase FAD-binding domain BF89_1048 PF08241 Methyltransferase domain BF89_105 PF00664 ABC transporter transmembrane region BF89_105 PF00005 ABC transporter BF89_1050 PF05525 Branched-chain amino acid transport protein BF89_1052 PF00196 Bacterial regulatory proteins, luxR family BF89_1052 PF00072 Response regulator receiver domain BF89_1053 PF00672 HAMP domain BF89_1053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1053 PF07730 Histidine kinase BF89_1054 PF09922 Cell wall-active antibiotics response 4TMS YvqF BF89_1057 PF03553 Na+/H+ antiporter family BF89_1059 PF00375 Sodium:dicarboxylate symporter family BF89_1061 PF00209 Sodium:neurotransmitter symporter family BF89_1063 PF01903 CbiX BF89_1064 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF89_1066 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF89_1066 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF89_1068 PF14306 PUA-like domain BF89_1068 PF01747 ATP-sulfurylase BF89_1069 PF01507 Phosphoadenosine phosphosulfate reductase family BF89_1071 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF89_1071 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF89_1073 PF00884 Sulfatase BF89_1074 PF01066 CDP-alcohol phosphatidyltransferase BF89_1075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF89_1075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF89_1077 PF02811 PHP domain BF89_1078 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF89_1079 PF01502 Phosphoribosyl-AMP cyclohydrolase BF89_108 PF03473 MOSC domain BF89_108 PF03475 3-alpha domain BF89_1080 PF00977 Histidine biosynthesis protein BF89_1081 PF00977 Histidine biosynthesis protein BF89_1082 PF00117 Glutamine amidotransferase class-I BF89_1083 PF00475 Imidazoleglycerol-phosphate dehydratase BF89_1084 PF00815 Histidinol dehydrogenase BF89_1085 PF01634 ATP phosphoribosyltransferase BF89_1086 PF13393 Histidyl-tRNA synthetase BF89_1087 PF00694 Aconitase C-terminal domain BF89_1088 PF00330 Aconitase family (aconitate hydratase) BF89_1089 PF00180 Isocitrate/isopropylmalate dehydrogenase BF89_109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_109 PF03466 LysR substrate binding domain BF89_1090 PF00682 HMGL-like BF89_1090 PF08502 LeuA allosteric (dimerisation) domain BF89_1091 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF89_1091 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF89_1092 PF01842 ACT domain BF89_1092 PF10369 Small subunit of acetolactate synthase BF89_1093 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF89_1093 PF00205 Thiamine pyrophosphate enzyme, central domain BF89_1093 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF89_1094 PF01063 Amino-transferase class IV BF89_1097 PF03698 Uncharacterised protein family (UPF0180) BF89_1099 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF89_11 PF00005 ABC transporter BF89_1101 PF02386 Cation transport protein BF89_1102 PF00375 Sodium:dicarboxylate symporter family BF89_1104 PF01047 MarR family BF89_1107 PF02673 Bacitracin resistance protein BacA BF89_1108 PF01554 MatE BF89_1112 PF01636 Phosphotransferase enzyme family BF89_1115 PF00258 Flavodoxin BF89_1117 PF01546 Peptidase family M20/M25/M40 BF89_1117 PF07687 Peptidase dimerisation domain BF89_1119 PF00501 AMP-binding enzyme BF89_1119 PF13193 AMP-binding enzyme C-terminal domain BF89_112 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF89_112 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF89_1120 PF03062 MBOAT, membrane-bound O-acyltransferase family BF89_1121 PF00550 Phosphopantetheine attachment site BF89_1122 PF04914 DltD protein BF89_1123 PF03060 Nitronate monooxygenase BF89_1124 PF17676 LD-carboxypeptidase C-terminal domain BF89_1124 PF02016 LD-carboxypeptidase N-terminal domain BF89_1126 PF00857 Isochorismatase family BF89_1128 PF01037 Lrp/AsnC ligand binding domain BF89_113 PF03466 LysR substrate binding domain BF89_113 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_1132 PF00005 ABC transporter BF89_1134 PF00005 ABC transporter BF89_1135 PF00392 Bacterial regulatory proteins, gntR family BF89_1136 PF00268 Ribonucleotide reductase, small chain BF89_1137 PF08343 Ribonucleotide reductase N-terminal BF89_1137 PF00317 Ribonucleotide reductase, all-alpha domain BF89_1137 PF02867 Ribonucleotide reductase, barrel domain BF89_1139 PF02867 Ribonucleotide reductase, barrel domain BF89_1139 PF08343 Ribonucleotide reductase N-terminal BF89_1139 PF00317 Ribonucleotide reductase, all-alpha domain BF89_1140 PF07972 NrdI Flavodoxin like BF89_1146 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BF89_1147 PF14489 QueF-like protein BF89_1148 PF04055 Radical SAM superfamily BF89_1149 PF01242 6-pyruvoyl tetrahydropterin synthase BF89_1150 PF06508 Queuosine biosynthesis protein QueC BF89_1151 PF00512 His Kinase A (phospho-acceptor) domain BF89_1151 PF00989 PAS fold BF89_1151 PF13188 PAS domain BF89_1151 PF13426 PAS domain BF89_1151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1153 PF12867 DinB superfamily BF89_1155 PF01047 MarR family BF89_1156 PF00512 His Kinase A (phospho-acceptor) domain BF89_1156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1156 PF02743 Cache domain BF89_1157 PF09388 Spo0E like sporulation regulatory protein BF89_1158 PF04748 Divergent polysaccharide deacetylase BF89_1160 PF00596 Class II Aldolase and Adducin N-terminal domain BF89_1161 PF00596 Class II Aldolase and Adducin N-terminal domain BF89_1162 PF01520 N-acetylmuramoyl-L-alanine amidase BF89_1162 PF00395 S-layer homology domain BF89_1166 PF08220 DeoR-like helix-turn-helix domain BF89_1166 PF00455 DeoR C terminal sensor domain BF89_1169 PF00266 Aminotransferase class-V BF89_1170 PF13419 Haloacid dehalogenase-like hydrolase BF89_1171 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1173 PF00005 ABC transporter BF89_1174 PF00005 ABC transporter BF89_1174 PF08402 TOBE domain BF89_1179 PF02386 Cation transport protein BF89_1181 PF00561 alpha/beta hydrolase fold BF89_1186 PF01575 MaoC like domain BF89_1187 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF89_1188 PF02386 Cation transport protein BF89_1189 PF02386 Cation transport protein BF89_1190 PF03741 Integral membrane protein TerC family BF89_1191 PF01226 Formate/nitrite transporter BF89_1193 PF01478 Type IV leader peptidase family BF89_1193 PF06750 Bacterial Peptidase A24 N-terminal domain BF89_1194 PF02589 LUD domain BF89_1195 PF11870 Domain of unknown function (DUF3390) BF89_1195 PF13183 4Fe-4S dicluster domain BF89_1195 PF02589 LUD domain BF89_1196 PF02754 Cysteine-rich domain BF89_1197 PF00392 Bacterial regulatory proteins, gntR family BF89_1197 PF07729 FCD domain BF89_1198 PF18698 Histidine kinase sensor domain BF89_1198 PF00512 His Kinase A (phospho-acceptor) domain BF89_1198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1198 PF00672 HAMP domain BF89_1198 PF00989 PAS fold BF89_1199 PF00072 Response regulator receiver domain BF89_1199 PF00486 Transcriptional regulatory protein, C terminal BF89_1201 PF17853 GGDEF-like domain BF89_1201 PF05651 Putative sugar diacid recognition BF89_1201 PF13556 PucR C-terminal helix-turn-helix domain BF89_1202 PF01565 FAD binding domain BF89_1202 PF02913 FAD linked oxidases, C-terminal domain BF89_1203 PF02754 Cysteine-rich domain BF89_1203 PF13183 4Fe-4S dicluster domain BF89_1204 PF00188 Cysteine-rich secretory protein family BF89_1206 PF00849 RNA pseudouridylate synthase BF89_1206 PF01479 S4 domain BF89_1208 PF03176 MMPL family BF89_1210 PF13416 Bacterial extracellular solute-binding protein BF89_1211 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1212 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1213 PF00005 ABC transporter BF89_1213 PF08402 TOBE domain BF89_1214 PF00171 Aldehyde dehydrogenase family BF89_1215 PF05547 Immune inhibitor A peptidase M6 BF89_1216 PF08671 Anti-repressor SinI BF89_1216 PF01381 Helix-turn-helix BF89_1217 PF12389 Camelysin metallo-endopeptidase BF89_1219 PF12389 Camelysin metallo-endopeptidase BF89_1221 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_1221 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_1223 PF13649 Methyltransferase domain BF89_1234 PF01381 Helix-turn-helix BF89_1235 PF02779 Transketolase, pyrimidine binding domain BF89_1235 PF16870 2-oxoglutarate dehydrogenase C-terminal BF89_1235 PF00676 Dehydrogenase E1 component BF89_1236 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF89_1236 PF00364 Biotin-requiring enzyme BF89_1236 PF02817 e3 binding domain BF89_1242 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_1242 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF89_1246 PF10042 Uncharacterized conserved protein (DUF2278) BF89_1247 PF02652 L-lactate permease BF89_1249 PF00290 Tryptophan synthase alpha chain BF89_125 PF00313 'Cold-shock' DNA-binding domain BF89_1250 PF00291 Pyridoxal-phosphate dependent enzyme BF89_1251 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BF89_1252 PF00218 Indole-3-glycerol phosphate synthase BF89_1253 PF00591 Glycosyl transferase family, a/b domain BF89_1253 PF02885 Glycosyl transferase family, helical bundle domain BF89_1254 PF00591 Glycosyl transferase family, a/b domain BF89_1254 PF02885 Glycosyl transferase family, helical bundle domain BF89_1254 PF00117 Glutamine amidotransferase class-I BF89_1256 PF00474 Sodium:solute symporter family BF89_1257 PF02368 Bacterial Ig-like domain (group 2) BF89_1260 PF00756 Putative esterase BF89_1262 PF13673 Acetyltransferase (GNAT) domain BF89_1263 PF00580 UvrD/REP helicase N-terminal domain BF89_1263 PF13361 UvrD-like helicase C-terminal domain BF89_1266 PF07098 Protein of unknown function (DUF1360) BF89_127 PF13302 Acetyltransferase (GNAT) domain BF89_1270 PF04321 RmlD substrate binding domain BF89_1271 PF16363 GDP-mannose 4,6 dehydratase BF89_1272 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF89_1273 PF00483 Nucleotidyl transferase BF89_1277 PF13181 Tetratricopeptide repeat BF89_1277 PF00535 Glycosyl transferase family 2 BF89_1279 PF05711 Macrocin-O-methyltransferase (TylF) BF89_1280 PF08241 Methyltransferase domain BF89_1281 PF00535 Glycosyl transferase family 2 BF89_1282 PF01098 Cell cycle protein BF89_1283 PF01098 Cell cycle protein BF89_1284 PF00149 Calcineurin-like phosphoesterase BF89_1286 PF00849 RNA pseudouridylate synthase BF89_1287 PF01513 ATP-NAD kinase BF89_1288 PF04607 Region found in RelA / SpoT proteins BF89_1290 PF01928 CYTH domain BF89_1291 PF01152 Bacterial-like globin BF89_1294 PF01432 Peptidase family M3 BF89_1294 PF08439 Oligopeptidase F BF89_1296 PF13091 PLD-like domain BF89_1296 PF13396 Phospholipase_D-nuclease N-terminal BF89_1297 PF05389 Negative regulator of genetic competence (MecA) BF89_1298 PF03741 Integral membrane protein TerC family BF89_1299 PF03960 ArsC family BF89_1301 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_1302 PF01554 MatE BF89_1303 PF00005 ABC transporter BF89_1303 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_1304 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_1304 PF00005 ABC transporter BF89_1305 PF12911 N-terminal TM domain of oligopeptide transport permease C BF89_1305 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1306 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1307 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_1309 PF00579 tRNA synthetases class I (W and Y) BF89_1310 PF12227 Protein of unknown function (DUF3603) BF89_1311 PF10026 Predicted Zn-dependent protease (DUF2268) BF89_1312 PF02801 Beta-ketoacyl synthase, C-terminal domain BF89_1312 PF00109 Beta-ketoacyl synthase, N-terminal domain BF89_1313 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF89_1313 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF89_1314 PF10815 ComZ BF89_1318 PF17871 AAA lid domain BF89_1318 PF07724 AAA domain (Cdc48 subfamily) BF89_1318 PF00004 ATPase family associated with various cellular activities (AAA) BF89_1318 PF02861 Clp amino terminal domain, pathogenicity island component BF89_1318 PF10431 C-terminal, D2-small domain, of ClpB protein BF89_1319 PF14168 YjzC-like protein BF89_1322 PF12758 Protein of unknown function (DUF3813) BF89_1323 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_1323 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_1324 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_1324 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_1326 PF00639 PPIC-type PPIASE domain BF89_1328 PF13509 S1 domain BF89_1328 PF17783 CvfB-like winged helix domain BF89_1329 PF04461 Protein of unknown function (DUF520) BF89_1332 PF00128 Alpha amylase, catalytic domain BF89_1333 PF00909 Ammonium Transporter Family BF89_1334 PF06628 Catalase-related immune-responsive BF89_1334 PF00199 Catalase BF89_1336 PF00733 Asparagine synthase BF89_1336 PF13537 Glutamine amidotransferase domain BF89_1338 PF07457 Protein of unknown function (DUF1516) BF89_1339 PF00202 Aminotransferase class-III BF89_1341 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF89_1342 PF10676 Spore germination protein gerPA/gerPF BF89_1343 PF10803 Spore germination GerPB BF89_1344 PF10737 Spore germination protein GerPC BF89_1346 PF10970 Spore germination protein GerPE BF89_1347 PF10676 Spore germination protein gerPA/gerPF BF89_1349 PF13361 UvrD-like helicase C-terminal domain BF89_1349 PF12705 PD-(D/E)XK nuclease superfamily BF89_1349 PF00580 UvrD/REP helicase N-terminal domain BF89_135 PF00583 Acetyltransferase (GNAT) family BF89_1350 PF12705 PD-(D/E)XK nuclease superfamily BF89_1350 PF13361 UvrD-like helicase C-terminal domain BF89_1351 PF10502 Signal peptidase, peptidase S26 BF89_1352 PF09335 SNARE associated Golgi protein BF89_1353 PF06338 ComK protein BF89_1356 PF00313 'Cold-shock' DNA-binding domain BF89_1358 PF00463 Isocitrate lyase family BF89_1359 PF01274 Malate synthase BF89_1360 PF00395 S-layer homology domain BF89_1362 PF00395 S-layer homology domain BF89_1362 PF03424 Carbohydrate binding domain (family 17/28) BF89_1362 PF00150 Cellulase (glycosyl hydrolase family 5) BF89_1363 PF00892 EamA-like transporter family BF89_1364 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_1364 PF00672 HAMP domain BF89_1364 PF02743 Cache domain BF89_1365 PF16491 CAAX prenyl protease N-terminal, five membrane helices BF89_1365 PF01435 Peptidase family M48 BF89_1370 PF00072 Response regulator receiver domain BF89_1370 PF00486 Transcriptional regulatory protein, C terminal BF89_1371 PF00512 His Kinase A (phospho-acceptor) domain BF89_1371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1374 PF06445 GyrI-like small molecule binding domain BF89_1374 PF12833 Helix-turn-helix domain BF89_1375 PF04542 Sigma-70 region 2 BF89_1375 PF08281 Sigma-70, region 4 BF89_1377 PF01966 HD domain BF89_1378 PF00149 Calcineurin-like phosphoesterase BF89_138 PF00302 Chloramphenicol acetyltransferase BF89_1380 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF89_1385 PF05593 RHS Repeat BF89_1388 PF05593 RHS Repeat BF89_1389 PF01520 N-acetylmuramoyl-L-alanine amidase BF89_1389 PF00395 S-layer homology domain BF89_1391 PF00501 AMP-binding enzyme BF89_1391 PF13193 AMP-binding enzyme C-terminal domain BF89_1393 PF03099 Biotin/lipoate A/B protein ligase family BF89_1393 PF10437 Bacterial lipoate protein ligase C-terminus BF89_1394 PF12706 Beta-lactamase superfamily domain BF89_1395 PF14149 YhfH-like protein BF89_1396 PF00356 Bacterial regulatory proteins, lacI family BF89_14 PF00581 Rhodanese-like domain BF89_140 PF03176 MMPL family BF89_1402 PF17932 Tetracyclin repressor-like, C-terminal domain BF89_1402 PF00440 Bacterial regulatory proteins, tetR family BF89_1404 PF03965 Penicillinase repressor BF89_1411 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF89_1412 PF00912 Transglycosylase BF89_1412 PF00905 Penicillin binding protein transpeptidase domain BF89_1413 PF03992 Antibiotic biosynthesis monooxygenase BF89_1414 PF03703 Bacterial PH domain BF89_1415 PF03703 Bacterial PH domain BF89_142 PF00753 Metallo-beta-lactamase superfamily BF89_142 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF89_1423 PF03703 Bacterial PH domain BF89_1425 PF03703 Bacterial PH domain BF89_1427 PF00440 Bacterial regulatory proteins, tetR family BF89_1427 PF17934 Tetracyclin repressor-like, C-terminal domain BF89_1429 PF12787 EcsC protein family BF89_1430 PF05975 Bacterial ABC transporter protein EcsB BF89_1431 PF00005 ABC transporter BF89_1432 PF01230 HIT domain BF89_1433 PF12732 YtxH-like protein BF89_1434 PF01047 MarR family BF89_1438 PF13538 UvrD-like helicase C-terminal domain BF89_1440 PF07690 Major Facilitator Superfamily BF89_1441 PF07690 Major Facilitator Superfamily BF89_1446 PF08281 Sigma-70, region 4 BF89_1446 PF04542 Sigma-70 region 2 BF89_1449 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BF89_1449 PF01266 FAD dependent oxidoreductase BF89_1450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF89_1450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF89_1451 PF00230 Major intrinsic protein BF89_1452 PF04309 Glycerol-3-phosphate responsive antiterminator BF89_1457 PF08386 TAP-like protein BF89_1457 PF00561 alpha/beta hydrolase fold BF89_1458 PF18801 response regulator aspartate phosphatase H, N terminal BF89_1459 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_1460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_1461 PF07690 Major Facilitator Superfamily BF89_1462 PF00440 Bacterial regulatory proteins, tetR family BF89_1463 PF01336 OB-fold nucleic acid binding domain BF89_1463 PF01966 HD domain BF89_1465 PF12323 Helix-turn-helix domain BF89_1465 PF01385 Probable transposase BF89_1465 PF07282 Putative transposase DNA-binding domain BF89_1466 PF13514 AAA domain BF89_1467 PF00149 Calcineurin-like phosphoesterase BF89_1470 PF11121 Protein of unknown function (DUF2639) BF89_1471 PF08240 Alcohol dehydrogenase GroES-like domain BF89_1471 PF00107 Zinc-binding dehydrogenase BF89_1473 PF01906 Putative heavy-metal-binding BF89_1478 PF01627 Hpt domain BF89_1478 PF00512 His Kinase A (phospho-acceptor) domain BF89_1478 PF00072 Response regulator receiver domain BF89_1478 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF89_1478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1479 PF03705 CheR methyltransferase, all-alpha domain BF89_1479 PF01739 CheR methyltransferase, SAM binding domain BF89_1480 PF13426 PAS domain BF89_1480 PF07228 Stage II sporulation protein E (SpoIIE) BF89_1482 PF04542 Sigma-70 region 2 BF89_1482 PF04539 Sigma-70 region 3 BF89_1482 PF04545 Sigma-70, region 4 BF89_1483 PF13581 Histidine kinase-like ATPase domain BF89_1484 PF01740 STAS domain BF89_1487 PF05532 CsbD-like BF89_1488 PF11181 Heat induced stress protein YflT BF89_1493 PF00395 S-layer homology domain BF89_1498 PF01966 HD domain BF89_1498 PF00672 HAMP domain BF89_1503 PF02082 Transcriptional regulator BF89_1504 PF02525 Flavodoxin-like fold BF89_1505 PF02733 Dak1 domain BF89_1507 PF02733 Dak1 domain BF89_151 PF13649 Methyltransferase domain BF89_1511 PF01066 CDP-alcohol phosphatidyltransferase BF89_1515 PF00440 Bacterial regulatory proteins, tetR family BF89_1515 PF18665 Tetracyclin repressor-like, C-terminal domain BF89_1516 PF07993 Male sterility protein BF89_1516 PF00550 Phosphopantetheine attachment site BF89_1527 PF07690 Major Facilitator Superfamily BF89_1530 PF01925 Sulfite exporter TauE/SafE BF89_1535 PF03796 DnaB-like helicase C terminal domain BF89_1535 PF00772 DnaB-like helicase N terminal domain BF89_1538 PF13411 MerR HTH family regulatory protein BF89_1538 PF06445 GyrI-like small molecule binding domain BF89_1542 PF02342 TerD domain BF89_1543 PF03401 Tripartite tricarboxylate transporter family receptor BF89_1544 PF08279 HTH domain BF89_1544 PF00072 Response regulator receiver domain BF89_1544 PF12431 Transcriptional regulator BF89_1545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1545 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF89_1546 PF00083 Sugar (and other) transporter BF89_1552 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_1552 PF00005 ABC transporter BF89_1553 PF00005 ABC transporter BF89_1553 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_1554 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_1554 PF00005 ABC transporter BF89_1555 PF12911 N-terminal TM domain of oligopeptide transport permease C BF89_1555 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1556 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1557 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_156 PF07690 Major Facilitator Superfamily BF89_1561 PF18593 CdiI immunity protein BF89_1562 PF02423 Ornithine cyclodeaminase/mu-crystallin family BF89_1563 PF05544 Proline racemase BF89_1564 PF11121 Protein of unknown function (DUF2639) BF89_1566 PF01520 N-acetylmuramoyl-L-alanine amidase BF89_1566 PF00395 S-layer homology domain BF89_1567 PF05343 M42 glutamyl aminopeptidase BF89_157 PF12146 Serine aminopeptidase, S33 BF89_1570 PF00378 Enoyl-CoA hydratase/isomerase BF89_1573 PF03062 MBOAT, membrane-bound O-acyltransferase family BF89_1574 PF03062 MBOAT, membrane-bound O-acyltransferase family BF89_1576 PF00395 S-layer homology domain BF89_1577 PF13205 Bacterial Ig-like domain BF89_1577 PF02368 Bacterial Ig-like domain (group 2) BF89_1577 PF00395 S-layer homology domain BF89_1579 PF01943 Polysaccharide biosynthesis protein BF89_1579 PF14667 Polysaccharide biosynthesis C-terminal domain BF89_1580 PF07516 SecA Wing and Scaffold domain BF89_1580 PF01043 SecA preprotein cross-linking domain BF89_1580 PF07517 SecA DEAD-like domain BF89_1584 PF01740 STAS domain BF89_1584 PF00916 Sulfate permease family BF89_1586 PF13193 AMP-binding enzyme C-terminal domain BF89_1586 PF00501 AMP-binding enzyme BF89_1587 PF04055 Radical SAM superfamily BF89_1589 PF01476 LysM domain BF89_1589 PF01471 Putative peptidoglycan binding domain BF89_1589 PF01510 N-acetylmuramoyl-L-alanine amidase BF89_1592 PF02245 Methylpurine-DNA glycosylase (MPG) BF89_1594 PF03306 Alpha-acetolactate decarboxylase BF89_1595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF89_1595 PF00205 Thiamine pyrophosphate enzyme, central domain BF89_1595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF89_1598 PF06133 Control of competence regulator ComK, YlbF/YmcA BF89_1599 PF04286 Protein of unknown function (DUF445) BF89_160 PF00005 ABC transporter BF89_1601 PF14398 YheC/D like ATP-grasp BF89_1603 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF89_1604 PF00005 ABC transporter BF89_1605 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1606 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF89_1607 PF00005 ABC transporter BF89_1607 PF00664 ABC transporter transmembrane region BF89_1608 PF00664 ABC transporter transmembrane region BF89_1608 PF00005 ABC transporter BF89_1609 PF00005 ABC transporter BF89_1609 PF00664 ABC transporter transmembrane region BF89_161 PF02824 TGS domain BF89_161 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF89_161 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF89_161 PF03129 Anticodon binding domain BF89_1610 PF00171 Aldehyde dehydrogenase family BF89_1612 PF01177 Asp/Glu/Hydantoin racemase BF89_1613 PF13520 Amino acid permease BF89_1615 PF06628 Catalase-related immune-responsive BF89_1615 PF18011 C-terminal domain found in long catalases BF89_1615 PF00199 Catalase BF89_1616 PF01965 DJ-1/PfpI family BF89_1618 PF07690 Major Facilitator Superfamily BF89_1619 PF12793 Sugar transport-related sRNA regulator N-term BF89_1619 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_162 PF00849 RNA pseudouridylate synthase BF89_162 PF01479 S4 domain BF89_1620 PF02525 Flavodoxin-like fold BF89_1622 PF01638 HxlR-like helix-turn-helix BF89_1623 PF07690 Major Facilitator Superfamily BF89_1624 PF17934 Tetracyclin repressor-like, C-terminal domain BF89_1624 PF00440 Bacterial regulatory proteins, tetR family BF89_1625 PF00893 Small Multidrug Resistance protein BF89_1626 PF00893 Small Multidrug Resistance protein BF89_1628 PF01037 Lrp/AsnC ligand binding domain BF89_1629 PF00892 EamA-like transporter family BF89_163 PF16291 Domain of unknown function (DUF4937 BF89_1632 PF07681 DoxX BF89_1634 PF02378 Phosphotransferase system, EIIC BF89_1634 PF00367 phosphotransferase system, EIIB BF89_1635 PF01380 SIS domain BF89_1636 PF01418 Helix-turn-helix domain, rpiR family BF89_1636 PF01380 SIS domain BF89_1638 PF00999 Sodium/hydrogen exchanger family BF89_1639 PF13520 Amino acid permease BF89_1646 PF09335 SNARE associated Golgi protein BF89_1648 PF02735 Ku70/Ku80 beta-barrel domain BF89_1651 PF11007 Spore coat associated protein JA (CotJA) BF89_1652 PF12652 CotJB protein BF89_1653 PF05067 Manganese containing catalase BF89_1654 PF05525 Branched-chain amino acid transport protein BF89_1657 PF09529 Integral membrane protein (intg_mem_TP0381) BF89_1659 PF00005 ABC transporter BF89_166 PF01235 Sodium:alanine symporter family BF89_1660 PF02687 FtsX-like permease family BF89_1660 PF12704 MacB-like periplasmic core domain BF89_1661 PF01476 LysM domain BF89_1661 PF06725 3D domain BF89_1664 PF02378 Phosphotransferase system, EIIC BF89_1665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF89_1666 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF89_1667 PF00874 PRD domain BF89_1667 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF89_1667 PF05043 Mga helix-turn-helix domain BF89_1667 PF08279 HTH domain BF89_1669 PF07690 Major Facilitator Superfamily BF89_167 PF01235 Sodium:alanine symporter family BF89_1670 PF02690 Na+/Pi-cotransporter BF89_1671 PF08240 Alcohol dehydrogenase GroES-like domain BF89_1671 PF00107 Zinc-binding dehydrogenase BF89_1672 PF03816 Cell envelope-related transcriptional attenuator domain BF89_1674 PF01925 Sulfite exporter TauE/SafE BF89_1675 PF13686 DsrE/DsrF/DrsH-like family BF89_1677 PF00581 Rhodanese-like domain BF89_1679 PF01206 Sulfurtransferase TusA BF89_168 PF00082 Subtilase family BF89_1680 PF00753 Metallo-beta-lactamase superfamily BF89_1680 PF00581 Rhodanese-like domain BF89_1681 PF00581 Rhodanese-like domain BF89_1681 PF01206 Sulfurtransferase TusA BF89_1682 PF02583 Metal-sensitive transcriptional repressor BF89_1683 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_1683 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF89_1688 PF04293 SpoVR like protein BF89_1689 PF00881 Nitroreductase family BF89_169 PF05163 DinB family BF89_1691 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_1693 PF03845 Spore germination protein BF89_1695 PF14148 YhdB-like protein BF89_1696 PF02600 Disulfide bond formation protein DsbB BF89_1697 PF00085 Thioredoxin BF89_1699 PF00356 Bacterial regulatory proteins, lacI family BF89_1699 PF13407 Periplasmic binding protein domain BF89_1700 PF02378 Phosphotransferase system, EIIC BF89_1700 PF00367 phosphotransferase system, EIIB BF89_1701 PF08244 Glycosyl hydrolases family 32 C terminal BF89_1701 PF00251 Glycosyl hydrolases family 32 N-terminal domain BF89_1702 PF00294 pfkB family carbohydrate kinase BF89_1704 PF03734 L,D-transpeptidase catalytic domain BF89_1704 PF17969 L,D-transpeptidase C-terminal domain BF89_1706 PF00860 Permease family BF89_1709 PF01047 MarR family BF89_171 PF00216 Bacterial DNA-binding protein BF89_1710 PF07690 Major Facilitator Superfamily BF89_1711 PF02702 Osmosensitive K+ channel His kinase sensor domain BF89_1712 PF02669 K+-transporting ATPase, c chain BF89_1714 PF03814 Potassium-transporting ATPase A subunit BF89_1718 PF08543 Phosphomethylpyrimidine kinase BF89_1719 PF00899 ThiF family BF89_1720 PF05690 Thiazole biosynthesis protein ThiG BF89_1721 PF02597 ThiS family BF89_1722 PF01266 FAD dependent oxidoreductase BF89_1723 PF02581 Thiamine monophosphate synthase BF89_1724 PF09084 NMT1/THI5 like BF89_1725 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1726 PF00005 ABC transporter BF89_1727 PF03070 TENA/THI-4/PQQC family BF89_1728 PF00246 Zinc carboxypeptidase BF89_1728 PF08239 Bacterial SH3 domain BF89_1731 PF00571 CBS domain BF89_174 PF07690 Major Facilitator Superfamily BF89_175 PF03621 MbtH-like protein BF89_1756 PF00873 AcrB/AcrD/AcrF family BF89_1758 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1759 PF00528 Binding-protein-dependent transport system inner membrane component BF89_176 PF13193 AMP-binding enzyme C-terminal domain BF89_176 PF00975 Thioesterase domain BF89_176 PF00550 Phosphopantetheine attachment site BF89_176 PF00668 Condensation domain BF89_176 PF00501 AMP-binding enzyme BF89_1760 PF12849 PBP superfamily domain BF89_1761 PF17910 FeoB cytosolic helical domain BF89_1761 PF02421 Ferrous iron transport protein B BF89_1761 PF07670 Nucleoside recognition BF89_1761 PF07664 Ferrous iron transport protein B C terminus BF89_1761 PF04023 FeoA domain BF89_1762 PF17910 FeoB cytosolic helical domain BF89_1762 PF07670 Nucleoside recognition BF89_1762 PF07664 Ferrous iron transport protein B C terminus BF89_1762 PF02421 Ferrous iron transport protein B BF89_1763 PF07670 Nucleoside recognition BF89_1763 PF17910 FeoB cytosolic helical domain BF89_1763 PF02421 Ferrous iron transport protein B BF89_1763 PF07664 Ferrous iron transport protein B C terminus BF89_1764 PF05504 Spore germination B3/ GerAC like, C-terminal BF89_1765 PF03845 Spore germination protein BF89_1766 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_1767 PF00474 Sodium:solute symporter family BF89_1768 PF11755 Protein of unknown function (DUF3311) BF89_1769 PF07687 Peptidase dimerisation domain BF89_1769 PF01546 Peptidase family M20/M25/M40 BF89_177 PF00501 AMP-binding enzyme BF89_177 PF00975 Thioesterase domain BF89_177 PF00550 Phosphopantetheine attachment site BF89_177 PF13193 AMP-binding enzyme C-terminal domain BF89_177 PF00668 Condensation domain BF89_1770 PF13529 Peptidase_C39 like family BF89_1771 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF89_1772 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF89_1773 PF00510 Cytochrome c oxidase subunit III BF89_1775 PF02254 TrkA-N domain BF89_1775 PF00999 Sodium/hydrogen exchanger family BF89_1775 PF02080 TrkA-C domain BF89_178 PF00857 Isochorismatase family BF89_178 PF00550 Phosphopantetheine attachment site BF89_1780 PF00860 Permease family BF89_1781 PF00324 Amino acid permease BF89_1784 PF05525 Branched-chain amino acid transport protein BF89_1785 PF00854 POT family BF89_1786 PF04203 Sortase domain BF89_1788 PF01381 Helix-turn-helix BF89_1789 PF06725 3D domain BF89_1789 PF01476 LysM domain BF89_179 PF00501 AMP-binding enzyme BF89_179 PF13193 AMP-binding enzyme C-terminal domain BF89_1790 PF02743 Cache domain BF89_1790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_1790 PF00672 HAMP domain BF89_1791 PF02673 Bacitracin resistance protein BacA BF89_1796 PF03372 Endonuclease/Exonuclease/phosphatase family BF89_1797 PF00882 Zinc dependent phospholipase C BF89_1799 PF00107 Zinc-binding dehydrogenase BF89_1799 PF08240 Alcohol dehydrogenase GroES-like domain BF89_18 PF13302 Acetyltransferase (GNAT) domain BF89_180 PF00425 chorismate binding enzyme BF89_1802 PF05547 Immune inhibitor A peptidase M6 BF89_1803 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF89_1804 PF13407 Periplasmic binding protein domain BF89_1805 PF02653 Branched-chain amino acid transport system / permease component BF89_1806 PF00005 ABC transporter BF89_1807 PF05025 RbsD / FucU transport protein family BF89_1808 PF00294 pfkB family carbohydrate kinase BF89_1809 PF00356 Bacterial regulatory proteins, lacI family BF89_181 PF00106 short chain dehydrogenase BF89_1810 PF07690 Major Facilitator Superfamily BF89_1811 PF07690 Major Facilitator Superfamily BF89_1812 PF01047 MarR family BF89_1813 PF07690 Major Facilitator Superfamily BF89_1814 PF00005 ABC transporter BF89_1814 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_1815 PF00005 ABC transporter BF89_1815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_1816 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1817 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1818 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_182 PF07690 Major Facilitator Superfamily BF89_1820 PF00582 Universal stress protein family BF89_1821 PF01740 STAS domain BF89_1821 PF00916 Sulfate permease family BF89_1823 PF00486 Transcriptional regulatory protein, C terminal BF89_1823 PF00072 Response regulator receiver domain BF89_1824 PF00672 HAMP domain BF89_1824 PF00989 PAS fold BF89_1824 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1824 PF18698 Histidine kinase sensor domain BF89_1824 PF00512 His Kinase A (phospho-acceptor) domain BF89_1825 PF01872 RibD C-terminal domain BF89_1826 PF08279 HTH domain BF89_1826 PF13280 WYL domain BF89_1831 PF00324 Amino acid permease BF89_1832 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1833 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1834 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF89_1835 PF00005 ABC transporter BF89_1836 PF01235 Sodium:alanine symporter family BF89_1837 PF01636 Phosphotransferase enzyme family BF89_1839 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_184 PF01022 Bacterial regulatory protein, arsR family BF89_1842 PF16657 Maltogenic Amylase, C-terminal domain BF89_1842 PF00128 Alpha amylase, catalytic domain BF89_1843 PF02378 Phosphotransferase system, EIIC BF89_1843 PF00367 phosphotransferase system, EIIB BF89_1844 PF00392 Bacterial regulatory proteins, gntR family BF89_1844 PF07702 UTRA domain BF89_1845 PF13520 Amino acid permease BF89_1846 PF03707 Bacterial signalling protein N terminal repeat BF89_1846 PF00563 EAL domain BF89_1846 PF00990 Diguanylate cyclase, GGDEF domain BF89_1849 PF13091 PLD-like domain BF89_1849 PF13396 Phospholipase_D-nuclease N-terminal BF89_1850 PF07728 AAA domain (dynein-related subfamily) BF89_1851 PF00092 von Willebrand factor type A domain BF89_1852 PF13344 Haloacid dehalogenase-like hydrolase BF89_1852 PF00293 NUDIX domain BF89_1853 PF01370 NAD dependent epimerase/dehydratase family BF89_1854 PF00155 Aminotransferase class I and II BF89_1855 PF08241 Methyltransferase domain BF89_1856 PF00005 ABC transporter BF89_1857 PF01032 FecCD transport family BF89_1858 PF01032 FecCD transport family BF89_1859 PF01497 Periplasmic binding protein BF89_186 PF13476 AAA domain BF89_1860 PF00854 POT family BF89_1861 PF08141 Small acid-soluble spore protein H family BF89_1862 PF01022 Bacterial regulatory protein, arsR family BF89_1863 PF02652 L-lactate permease BF89_1864 PF00206 Lyase BF89_1864 PF10415 Fumarase C C-terminus BF89_1865 PF03471 Transporter associated domain BF89_1865 PF01595 Cyclin M transmembrane N-terminal domain BF89_1865 PF00571 CBS domain BF89_1866 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_1867 PF01773 Na+ dependent nucleoside transporter N-terminus BF89_1867 PF07662 Na+ dependent nucleoside transporter C-terminus BF89_1868 PF03816 Cell envelope-related transcriptional attenuator domain BF89_1869 PF04294 VanW like protein BF89_187 PF12320 Type 5 capsule protein repressor C-terminal domain BF89_187 PF00149 Calcineurin-like phosphoesterase BF89_1873 PF07504 Fungalysin/Thermolysin Propeptide Motif BF89_1873 PF03413 Peptidase propeptide and YPEB domain BF89_1873 PF01447 Thermolysin metallopeptidase, catalytic domain BF89_1873 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF89_1876 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF89_1876 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BF89_1876 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BF89_1877 PF00403 Heavy-metal-associated domain BF89_1878 PF01022 Bacterial regulatory protein, arsR family BF89_1879 PF13520 Amino acid permease BF89_188 PF10763 Protein of unknown function (DUF2584) BF89_1880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF89_1880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF89_1882 PF07849 Protein of unknown function (DUF1641) BF89_1884 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF89_1884 PF00384 Molybdopterin oxidoreductase BF89_1884 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF89_1884 PF00037 4Fe-4S binding domain BF89_1884 PF01568 Molydopterin dinucleotide binding domain BF89_1885 PF02634 FdhD/NarQ family BF89_1886 PF13508 Acetyltransferase (GNAT) domain BF89_1886 PF00583 Acetyltransferase (GNAT) family BF89_1888 PF00486 Transcriptional regulatory protein, C terminal BF89_1888 PF00072 Response regulator receiver domain BF89_1889 PF18698 Histidine kinase sensor domain BF89_1889 PF00672 HAMP domain BF89_1889 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1889 PF00512 His Kinase A (phospho-acceptor) domain BF89_1889 PF00989 PAS fold BF89_1891 PF00392 Bacterial regulatory proteins, gntR family BF89_1891 PF00155 Aminotransferase class I and II BF89_1892 PF00892 EamA-like transporter family BF89_1894 PF00390 Malic enzyme, N-terminal domain BF89_1894 PF03949 Malic enzyme, NAD binding domain BF89_1895 PF03390 2-hydroxycarboxylate transporter family BF89_1896 PF00072 Response regulator receiver domain BF89_1897 PF00989 PAS fold BF89_1897 PF17203 Single cache domain 3 BF89_1897 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF89_1897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1898 PF02743 Cache domain BF89_1898 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_1898 PF00672 HAMP domain BF89_1899 PF13529 Peptidase_C39 like family BF89_19 PF03707 Bacterial signalling protein N terminal repeat BF89_19 PF00990 Diguanylate cyclase, GGDEF domain BF89_19 PF00563 EAL domain BF89_190 PF00378 Enoyl-CoA hydratase/isomerase BF89_1901 PF00512 His Kinase A (phospho-acceptor) domain BF89_1901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1902 PF00486 Transcriptional regulatory protein, C terminal BF89_1902 PF00072 Response regulator receiver domain BF89_1903 PF00149 Calcineurin-like phosphoesterase BF89_1904 PF13416 Bacterial extracellular solute-binding protein BF89_1906 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1907 PF00528 Binding-protein-dependent transport system inner membrane component BF89_1908 PF00005 ABC transporter BF89_1908 PF17912 MalK OB fold domain BF89_1909 PF04309 Glycerol-3-phosphate responsive antiterminator BF89_191 PF01810 LysE type translocator BF89_1913 PF03600 Citrate transporter BF89_1914 PF00072 Response regulator receiver domain BF89_1914 PF08279 HTH domain BF89_1914 PF12431 Transcriptional regulator BF89_1915 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF89_1915 PF00989 PAS fold BF89_1915 PF17203 Single cache domain 3 BF89_1915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_1916 PF02743 Cache domain BF89_1916 PF00672 HAMP domain BF89_1916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_1917 PF01145 SPFH domain / Band 7 family BF89_1917 PF15975 Flotillin BF89_1919 PF08453 Peptidase family M9 N-terminal BF89_1919 PF18496 Collagenase G catalytic helper subdomain BF89_1919 PF01752 Collagenase BF89_192 PF00171 Aldehyde dehydrogenase family BF89_1920 PF02028 BCCT, betaine/carnitine/choline family transporter BF89_1923 PF04285 Protein of unknown function (DUF444) BF89_1924 PF06798 PrkA serine protein kinase C-terminal domain BF89_1924 PF08298 PrkA AAA domain BF89_1926 PF00990 Diguanylate cyclase, GGDEF domain BF89_1926 PF00563 EAL domain BF89_1926 PF03707 Bacterial signalling protein N terminal repeat BF89_1927 PF00588 SpoU rRNA Methylase family BF89_1928 PF12671 Putative amidase domain BF89_1929 PF08331 Domain of unknown function (DUF1730) BF89_193 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF89_193 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF89_1931 PF13462 Thioredoxin BF89_1932 PF00912 Transglycosylase BF89_1932 PF00905 Penicillin binding protein transpeptidase domain BF89_1933 PF00293 NUDIX domain BF89_1933 PF13344 Haloacid dehalogenase-like hydrolase BF89_1934 PF01709 Transcriptional regulator BF89_194 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF89_194 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF89_194 PF02770 Acyl-CoA dehydrogenase, middle domain BF89_1956 PF11023 Zinc-ribbon containing domain BF89_1957 PF01475 Ferric uptake regulator family BF89_1958 PF00578 AhpC/TSA family BF89_1959 PF07885 Ion channel BF89_196 PF03972 MmgE/PrpD family BF89_1962 PF00005 ABC transporter BF89_1963 PF00202 Aminotransferase class-III BF89_1964 PF01645 Conserved region in glutamate synthase BF89_1964 PF01493 GXGXG motif BF89_1964 PF04898 Glutamate synthase central domain BF89_1964 PF00310 Glutamine amidotransferases class-II BF89_1965 PF06081 Aromatic acid exporter family member 1 BF89_1966 PF00005 ABC transporter BF89_1966 PF00664 ABC transporter transmembrane region BF89_1967 PF04167 Protein of unknown function (DUF402) BF89_1968 PF14182 YgaB-like protein BF89_1969 PF04259 Small, acid-soluble spore protein, gamma-type BF89_197 PF00285 Citrate synthase, C-terminal domain BF89_1971 PF00730 HhH-GPD superfamily base excision DNA repair protein BF89_1971 PF14815 NUDIX domain BF89_1972 PF04307 LexA-binding, inner membrane-associated putative hydrolase BF89_1973 PF14043 WVELL protein BF89_1974 PF08176 Small acid-soluble spore protein K family BF89_1977 PF02631 RecX family BF89_1978 PF08338 Domain of unknown function (DUF1731) BF89_1978 PF01370 NAD dependent epimerase/dehydratase family BF89_1979 PF01979 Amidohydrolase family BF89_198 PF01521 Iron-sulphur cluster biosynthesis BF89_1982 PF04101 Glycosyltransferase family 28 C-terminal domain BF89_1982 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF89_1983 PF04055 Radical SAM superfamily BF89_1984 PF02901 Pyruvate formate lyase-like BF89_1984 PF01228 Glycine radical BF89_1985 PF00535 Glycosyl transferase family 2 BF89_1986 PF02911 Formyl transferase, C-terminal domain BF89_1986 PF00551 Formyl transferase BF89_1986 PF01370 NAD dependent epimerase/dehydratase family BF89_1987 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF89_1987 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF89_1987 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF89_1988 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF89_1988 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF89_1988 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF89_1989 PF00535 Glycosyl transferase family 2 BF89_199 PF07690 Major Facilitator Superfamily BF89_1992 PF00144 Beta-lactamase BF89_1993 PF02378 Phosphotransferase system, EIIC BF89_1993 PF00367 phosphotransferase system, EIIB BF89_1994 PF04960 Glutaminase BF89_1999 PF07687 Peptidase dimerisation domain BF89_1999 PF01546 Peptidase family M20/M25/M40 BF89_2 PF00378 Enoyl-CoA hydratase/isomerase BF89_200 PF00912 Transglycosylase BF89_200 PF00905 Penicillin binding protein transpeptidase domain BF89_2000 PF00324 Amino acid permease BF89_2002 PF02954 Bacterial regulatory protein, Fis family BF89_2002 PF13426 PAS domain BF89_2002 PF00158 Sigma-54 interaction domain BF89_2004 PF01416 tRNA pseudouridine synthase BF89_2006 PF01183 Glycosyl hydrolases family 25 BF89_2029 PF00589 Phage integrase family BF89_2030 PF00589 Phage integrase family BF89_204 PF10676 Spore germination protein gerPA/gerPF BF89_2051 PF01695 IstB-like ATP binding protein BF89_2051 PF07319 Primosomal protein DnaI N-terminus BF89_2058 PF01381 Helix-turn-helix BF89_2062 PF00589 Phage integrase family BF89_2062 PF14659 Phage integrase, N-terminal SAM-like domain BF89_2063 PF01938 TRAM domain BF89_2063 PF05958 tRNA (Uracil-5-)-methyltransferase BF89_2064 PF00730 HhH-GPD superfamily base excision DNA repair protein BF89_2066 PF01522 Polysaccharide deacetylase BF89_2067 PF05683 Fumarase C-terminus BF89_2067 PF05681 Fumarate hydratase (Fumerase) BF89_2069 PF04055 Radical SAM superfamily BF89_2069 PF08756 YfkB-like domain BF89_2070 PF14167 YfkD-like protein BF89_2071 PF01699 Sodium/calcium exchanger protein BF89_2072 PF16242 Pyridoxamine 5'-phosphate oxidase like BF89_2075 PF09335 SNARE associated Golgi protein BF89_2077 PF10502 Signal peptidase, peptidase S26 BF89_2078 PF10502 Signal peptidase, peptidase S26 BF89_2080 PF00892 EamA-like transporter family BF89_2082 PF03631 Virulence factor BrkB BF89_2084 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF89_2085 PF06569 Protein of unknown function (DUF1128) BF89_2086 PF00690 Cation transporter/ATPase, N-terminus BF89_2086 PF00689 Cation transporting ATPase, C-terminus BF89_2087 PF05816 Toxic anion resistance protein (TelA) BF89_2088 PF14266 Putative component of 'biosynthetic module' BF89_2089 PF03741 Integral membrane protein TerC family BF89_2090 PF02342 TerD domain BF89_2091 PF02342 TerD domain BF89_2092 PF02342 TerD domain BF89_2093 PF00480 ROK family BF89_2095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF89_2095 PF09180 Prolyl-tRNA synthetase, C-terminal BF89_2095 PF03129 Anticodon binding domain BF89_2098 PF11700 Vacuole effluxer Atg22 like BF89_2102 PF00440 Bacterial regulatory proteins, tetR family BF89_2102 PF08360 QacR-like protein, C-terminal region BF89_2106 PF00041 Fibronectin type III domain BF89_2106 PF00704 Glycosyl hydrolases family 18 BF89_2107 PF00041 Fibronectin type III domain BF89_2107 PF00704 Glycosyl hydrolases family 18 BF89_2108 PF12848 ABC transporter BF89_2108 PF00005 ABC transporter BF89_2109 PF00005 ABC transporter BF89_2111 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2112 PF01910 Thiamine-binding protein BF89_2113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2113 PF00672 HAMP domain BF89_2114 PF03605 Anaerobic c4-dicarboxylate membrane transporter BF89_2115 PF02581 Thiamine monophosphate synthase BF89_2116 PF02110 Hydroxyethylthiazole kinase family BF89_2117 PF01751 Toprim domain BF89_2117 PF01131 DNA topoisomerase BF89_2118 PF01061 ABC-2 type transporter BF89_2119 PF03372 Endonuclease/Exonuclease/phosphatase family BF89_2120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF89_2120 PF00367 phosphotransferase system, EIIB BF89_2120 PF02378 Phosphotransferase system, EIIC BF89_2121 PF00128 Alpha amylase, catalytic domain BF89_2121 PF16657 Maltogenic Amylase, C-terminal domain BF89_2122 PF12729 Four helix bundle sensory module for signal transduction BF89_2122 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2122 PF00672 HAMP domain BF89_2123 PF12729 Four helix bundle sensory module for signal transduction BF89_2123 PF00672 HAMP domain BF89_2123 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2124 PF00005 ABC transporter BF89_2125 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF89_2126 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2128 PF01266 FAD dependent oxidoreductase BF89_2128 PF00355 Rieske [2Fe-2S] domain BF89_2129 PF07690 Major Facilitator Superfamily BF89_2130 PF10127 RNA repair pathway DNA polymerase beta family BF89_2134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2134 PF13188 PAS domain BF89_2134 PF00989 PAS fold BF89_2134 PF13426 PAS domain BF89_2134 PF00512 His Kinase A (phospho-acceptor) domain BF89_2140 PF12728 Helix-turn-helix domain BF89_2142 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_2143 PF01497 Periplasmic binding protein BF89_2144 PF01032 FecCD transport family BF89_2145 PF01032 FecCD transport family BF89_2146 PF00596 Class II Aldolase and Adducin N-terminal domain BF89_2148 PF01636 Phosphotransferase enzyme family BF89_2149 PF00578 AhpC/TSA family BF89_2150 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_2150 PF13192 Thioredoxin domain BF89_2152 PF07687 Peptidase dimerisation domain BF89_2152 PF01546 Peptidase family M20/M25/M40 BF89_2155 PF13378 Enolase C-terminal domain-like BF89_2155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF89_2158 PF07308 Protein of unknown function (DUF1456) BF89_2160 PF01207 Dihydrouridine synthase (Dus) BF89_2161 PF02475 Met-10+ like-protein BF89_2161 PF05958 tRNA (Uracil-5-)-methyltransferase BF89_2161 PF01938 TRAM domain BF89_2162 PF07662 Na+ dependent nucleoside transporter C-terminus BF89_2162 PF07670 Nucleoside recognition BF89_2162 PF01773 Na+ dependent nucleoside transporter N-terminus BF89_2165 PF02073 Thermophilic metalloprotease (M29) BF89_2166 PF00893 Small Multidrug Resistance protein BF89_2167 PF00171 Aldehyde dehydrogenase family BF89_2168 PF00158 Sigma-54 interaction domain BF89_2169 PF00202 Aminotransferase class-III BF89_2170 PF13419 Haloacid dehalogenase-like hydrolase BF89_2171 PF00781 Diacylglycerol kinase catalytic domain BF89_2172 PF02934 GatB/GatE catalytic domain BF89_2172 PF02637 GatB domain BF89_2173 PF01425 Amidase BF89_2174 PF02686 Glu-tRNAGln amidotransferase C subunit BF89_2175 PF05360 yiaA/B two helix domain BF89_2176 PF01047 MarR family BF89_2177 PF17886 HSP20-like domain found in ArsA BF89_2177 PF02374 Anion-transporting ATPase BF89_2178 PF17886 HSP20-like domain found in ArsA BF89_2178 PF02374 Anion-transporting ATPase BF89_2181 PF03180 NLPA lipoprotein BF89_2182 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2183 PF09383 NIL domain BF89_2183 PF00005 ABC transporter BF89_2184 PF00857 Isochorismatase family BF89_2186 PF00171 Aldehyde dehydrogenase family BF89_2187 PF01925 Sulfite exporter TauE/SafE BF89_2188 PF07537 CamS sex pheromone cAM373 precursor BF89_2189 PF12826 Helix-hairpin-helix motif BF89_2189 PF00533 BRCA1 C Terminus (BRCT) domain BF89_2189 PF01653 NAD-dependent DNA ligase adenylation domain BF89_2189 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF89_2189 PF03120 NAD-dependent DNA ligase OB-fold domain BF89_2190 PF13361 UvrD-like helicase C-terminal domain BF89_2190 PF00580 UvrD/REP helicase N-terminal domain BF89_2191 PF01884 PcrB family BF89_2195 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF89_2195 PF02844 Phosphoribosylglycinamide synthetase, N domain BF89_2195 PF02843 Phosphoribosylglycinamide synthetase, C domain BF89_2196 PF01808 AICARFT/IMPCHase bienzyme BF89_2196 PF02142 MGS-like domain BF89_2197 PF00551 Formyl transferase BF89_2198 PF00586 AIR synthase related protein, N-terminal domain BF89_2198 PF02769 AIR synthase related protein, C-terminal domain BF89_2199 PF00156 Phosphoribosyl transferase domain BF89_22 PF00440 Bacterial regulatory proteins, tetR family BF89_2200 PF02769 AIR synthase related protein, C-terminal domain BF89_2200 PF00586 AIR synthase related protein, N-terminal domain BF89_2200 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BF89_2202 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BF89_2203 PF01259 SAICAR synthetase BF89_2204 PF10397 Adenylosuccinate lyase C-terminus BF89_2204 PF00206 Lyase BF89_2205 PF02222 ATP-grasp domain BF89_2205 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BF89_2206 PF00731 AIR carboxylase BF89_2211 PF00486 Transcriptional regulatory protein, C terminal BF89_2211 PF00072 Response regulator receiver domain BF89_2212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2212 PF00512 His Kinase A (phospho-acceptor) domain BF89_2213 PF00005 ABC transporter BF89_2215 PF02673 Bacitracin resistance protein BacA BF89_2221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2221 PF00989 PAS fold BF89_2221 PF16736 Single Cache-like BF89_2221 PF00512 His Kinase A (phospho-acceptor) domain BF89_2222 PF00486 Transcriptional regulatory protein, C terminal BF89_2222 PF00072 Response regulator receiver domain BF89_2223 PF00860 Permease family BF89_2224 PF02540 NAD synthase BF89_2224 PF00958 GMP synthase C terminal domain BF89_2224 PF00117 Glutamine amidotransferase class-I BF89_2225 PF00118 TCP-1/cpn60 chaperonin family BF89_2226 PF00166 Chaperonin 10 Kd subunit BF89_2227 PF02517 CPBP intramembrane metalloprotease BF89_2229 PF06971 Putative DNA-binding protein N-terminus BF89_2229 PF02629 CoA binding domain BF89_2230 PF00005 ABC transporter BF89_2230 PF16326 ABC transporter C-terminal domain BF89_2230 PF12848 ABC transporter BF89_2231 PF00814 Glycoprotease family BF89_2232 PF00583 Acetyltransferase (GNAT) family BF89_2233 PF00814 Glycoprotease family BF89_2234 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BF89_224 PF04471 Restriction endonuclease BF89_2252 PF17283 SprT-like zinc ribbon domain BF89_2252 PF10263 SprT-like family BF89_2253 PF17674 HHH domain BF89_2253 PF16921 Tex protein YqgF-like domain BF89_2253 PF09371 Tex-like protein N-terminal domain BF89_2253 PF00575 S1 RNA binding domain BF89_2254 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BF89_2255 PF01402 Ribbon-helix-helix protein, copG family BF89_2256 PF00842 Alanine racemase, C-terminal domain BF89_2256 PF01168 Alanine racemase, N-terminal domain BF89_2258 PF01648 4'-phosphopantetheinyl transferase superfamily BF89_2259 PF03851 UV-endonuclease UvdE BF89_226 PF03424 Carbohydrate binding domain (family 17/28) BF89_226 PF00395 S-layer homology domain BF89_226 PF00150 Cellulase (glycosyl hydrolase family 5) BF89_2260 PF01694 Rhomboid family BF89_2261 PF00270 DEAD/DEAH box helicase BF89_2261 PF00271 Helicase conserved C-terminal domain BF89_2262 PF02875 Mur ligase family, glutamate ligase domain BF89_2262 PF01225 Mur ligase family, catalytic domain BF89_2262 PF08245 Mur ligase middle domain BF89_2263 PF01820 D-ala D-ala ligase N-terminus BF89_2263 PF07478 D-ala D-ala ligase C-terminus BF89_2264 PF01820 D-ala D-ala ligase N-terminus BF89_2264 PF07478 D-ala D-ala ligase C-terminus BF89_2265 PF07690 Major Facilitator Superfamily BF89_2267 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF89_2268 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_227 PF04740 LXG domain of WXG superfamily BF89_227 PF14436 Bacterial EndoU nuclease BF89_2274 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_2274 PF00005 ABC transporter BF89_2275 PF00005 ABC transporter BF89_2275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_2277 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2278 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_2281 PF00005 ABC transporter BF89_2281 PF16326 ABC transporter C-terminal domain BF89_2281 PF12848 ABC transporter BF89_2285 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BF89_2286 PF01026 TatD related DNase BF89_2289 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_2289 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_229 PF00085 Thioredoxin BF89_2291 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF89_2291 PF00356 Bacterial regulatory proteins, lacI family BF89_2293 PF01553 Acyltransferase BF89_2295 PF14142 YrzO-like protein BF89_2296 PF00892 EamA-like transporter family BF89_2297 PF03466 LysR substrate binding domain BF89_2297 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_230 PF01569 PAP2 superfamily BF89_2300 PF12727 PBP superfamily domain BF89_2300 PF12728 Helix-turn-helix domain BF89_2302 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2303 PF06800 Sugar transport protein BF89_2304 PF04973 Nicotinamide mononucleotide transporter BF89_2305 PF03807 NADP oxidoreductase coenzyme F420-dependent BF89_2305 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF89_2306 PF00248 Aldo/keto reductase family BF89_2307 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_2308 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_231 PF01545 Cation efflux family BF89_231 PF16916 Dimerisation domain of Zinc Transporter BF89_2311 PF12833 Helix-turn-helix domain BF89_2313 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_2314 PF00005 ABC transporter BF89_2314 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_2315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_2315 PF00005 ABC transporter BF89_2316 PF12911 N-terminal TM domain of oligopeptide transport permease C BF89_2316 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2317 PF00528 Binding-protein-dependent transport system inner membrane component BF89_232 PF07070 SpoOM protein BF89_2320 PF07690 Major Facilitator Superfamily BF89_2322 PF07690 Major Facilitator Superfamily BF89_2323 PF01565 FAD binding domain BF89_2324 PF01565 FAD binding domain BF89_2327 PF03180 NLPA lipoprotein BF89_2328 PF00005 ABC transporter BF89_2328 PF09383 NIL domain BF89_2329 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2337 PF00326 Prolyl oligopeptidase family BF89_2337 PF07676 WD40-like Beta Propeller Repeat BF89_2338 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF89_2338 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF89_2339 PF02447 GntP family permease BF89_2340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF89_2340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF89_2341 PF07729 FCD domain BF89_2341 PF00392 Bacterial regulatory proteins, gntR family BF89_2342 PF00561 alpha/beta hydrolase fold BF89_2343 PF01380 SIS domain BF89_2344 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF89_2344 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF89_2344 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF89_2344 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF89_2345 PF07949 YbbR-like protein BF89_2346 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF89_2347 PF00491 Arginase family BF89_2348 PF02595 Glycerate kinase family BF89_2349 PF02595 Glycerate kinase family BF89_235 PF14162 YozD-like protein BF89_2364 PF01522 Polysaccharide deacetylase BF89_2365 PF14089 KinB-signalling pathway activation in sporulation BF89_2366 PF17898 Spore germination GerD central core domain BF89_2367 PF10609 NUBPL iron-transfer P-loop NTPase BF89_2368 PF01520 N-acetylmuramoyl-L-alanine amidase BF89_2370 PF00380 Ribosomal protein S9/S16 BF89_2371 PF00572 Ribosomal protein L13 BF89_2372 PF01416 tRNA pseudouridine synthase BF89_2373 PF02361 Cobalt transport protein BF89_2374 PF00005 ABC transporter BF89_2375 PF00005 ABC transporter BF89_2376 PF01196 Ribosomal protein L17 BF89_2377 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF89_2377 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF89_2377 PF01000 RNA polymerase Rpb3/RpoA insert domain BF89_2378 PF00411 Ribosomal protein S11 BF89_2379 PF00416 Ribosomal protein S13/S18 BF89_238 PF06855 YozE SAM-like fold BF89_2380 PF00444 Ribosomal protein L36 BF89_2381 PF01176 Translation initiation factor 1A / IF-1 BF89_2382 PF00557 Metallopeptidase family M24 BF89_2383 PF05191 Adenylate kinase, active site lid BF89_2384 PF00344 SecY translocase BF89_2385 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BF89_2386 PF00327 Ribosomal protein L30p/L7e BF89_2387 PF03719 Ribosomal protein S5, C-terminal domain BF89_2387 PF00333 Ribosomal protein S5, N-terminal domain BF89_2388 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BF89_2389 PF00347 Ribosomal protein L6 BF89_239 PF14122 YokU-like protein, putative antitoxin BF89_2390 PF00410 Ribosomal protein S8 BF89_2391 PF00253 Ribosomal protein S14p/S29e BF89_2392 PF00673 ribosomal L5P family C-terminus BF89_2392 PF00281 Ribosomal protein L5 BF89_2393 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BF89_2393 PF00467 KOW motif BF89_2394 PF00238 Ribosomal protein L14p/L23e BF89_2395 PF00366 Ribosomal protein S17 BF89_2396 PF00831 Ribosomal L29 protein BF89_2397 PF00252 Ribosomal protein L16p/L10e BF89_2398 PF07650 KH domain BF89_2398 PF00189 Ribosomal protein S3, C-terminal domain BF89_2399 PF00237 Ribosomal protein L22p/L17e BF89_240 PF12544 Lysine-2,3-aminomutase BF89_2400 PF00203 Ribosomal protein S19 BF89_2401 PF00181 Ribosomal Proteins L2, RNA binding domain BF89_2401 PF03947 Ribosomal Proteins L2, C-terminal domain BF89_2402 PF00276 Ribosomal protein L23 BF89_2403 PF00573 Ribosomal protein L4/L1 family BF89_2404 PF00297 Ribosomal protein L3 BF89_2405 PF00338 Ribosomal protein S10p/S20e BF89_2406 PF03144 Elongation factor Tu domain 2 BF89_2406 PF03143 Elongation factor Tu C-terminal domain BF89_2406 PF00009 Elongation factor Tu GTP binding domain BF89_2407 PF00679 Elongation factor G C-terminus BF89_2407 PF14492 Elongation Factor G, domain II BF89_2407 PF03764 Elongation factor G, domain IV BF89_2407 PF00009 Elongation factor Tu GTP binding domain BF89_2407 PF03144 Elongation factor Tu domain 2 BF89_2408 PF00177 Ribosomal protein S7p/S5e BF89_2409 PF00164 Ribosomal protein S12/S23 BF89_241 PF13426 PAS domain BF89_241 PF00158 Sigma-54 interaction domain BF89_241 PF02954 Bacterial regulatory protein, Fis family BF89_2410 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF89_2411 PF00623 RNA polymerase Rpb1, domain 2 BF89_2411 PF05000 RNA polymerase Rpb1, domain 4 BF89_2411 PF04997 RNA polymerase Rpb1, domain 1 BF89_2411 PF04983 RNA polymerase Rpb1, domain 3 BF89_2411 PF04998 RNA polymerase Rpb1, domain 5 BF89_2412 PF00562 RNA polymerase Rpb2, domain 6 BF89_2412 PF10385 RNA polymerase beta subunit external 1 domain BF89_2412 PF04565 RNA polymerase Rpb2, domain 3 BF89_2412 PF04561 RNA polymerase Rpb2, domain 2 BF89_2412 PF04560 RNA polymerase Rpb2, domain 7 BF89_2412 PF04563 RNA polymerase beta subunit BF89_2413 PF05175 Methyltransferase small domain BF89_2414 PF00542 Ribosomal protein L7/L12 C-terminal domain BF89_2414 PF16320 Ribosomal protein L7/L12 dimerisation domain BF89_2415 PF00466 Ribosomal protein L10 BF89_2416 PF00687 Ribosomal protein L1p/L10e family BF89_2417 PF00298 Ribosomal protein L11, RNA binding domain BF89_2417 PF03946 Ribosomal protein L11, N-terminal domain BF89_2418 PF00467 KOW motif BF89_2418 PF02357 Transcription termination factor nusG BF89_2419 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BF89_242 PF00583 Acetyltransferase (GNAT) family BF89_2420 PF08281 Sigma-70, region 4 BF89_2420 PF04542 Sigma-70 region 2 BF89_2421 PF05991 YacP-like NYN domain BF89_2422 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF89_2422 PF00588 SpoU rRNA Methylase family BF89_2423 PF00636 Ribonuclease III domain BF89_2424 PF01406 tRNA synthetases class I (C) catalytic domain BF89_2424 PF09190 DALR domain BF89_2425 PF00132 Bacterial transferase hexapeptide (six repeats) BF89_2425 PF06426 Serine acetyltransferase, N-terminal BF89_2426 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF89_2427 PF02542 YgbB family BF89_2428 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF89_243 PF01546 Peptidase family M20/M25/M40 BF89_243 PF07687 Peptidase dimerisation domain BF89_2430 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF89_2430 PF10635 DisA bacterial checkpoint controller linker region BF89_2431 PF18073 Rubredoxin metal binding domain BF89_2432 PF02861 Clp amino terminal domain, pathogenicity island component BF89_2432 PF17871 AAA lid domain BF89_2432 PF07724 AAA domain (Cdc48 subfamily) BF89_2432 PF00004 ATPase family associated with various cellular activities (AAA) BF89_2432 PF10431 C-terminal, D2-small domain, of ClpB protein BF89_2433 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BF89_2434 PF02151 UvrB/uvrC motif BF89_2435 PF05848 CtsR N-terminal HTH domain BF89_2435 PF17727 CtsR C-terminal dimerization domain BF89_244 PF01144 Coenzyme A transferase BF89_2440 PF00152 tRNA synthetases class II (D, K and N) BF89_2440 PF01336 OB-fold nucleic acid binding domain BF89_2441 PF01207 Dihydrouridine synthase (Dus) BF89_2442 PF01381 Helix-turn-helix BF89_2443 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF89_2444 PF02152 Dihydroneopterin aldolase BF89_2445 PF00809 Pterin binding enzyme BF89_2446 PF01063 Amino-transferase class IV BF89_2447 PF00117 Glutamine amidotransferase class-I BF89_2448 PF00425 chorismate binding enzyme BF89_2448 PF04715 Anthranilate synthase component I, N terminal region BF89_2449 PF00291 Pyridoxal-phosphate dependent enzyme BF89_245 PF01144 Coenzyme A transferase BF89_2450 PF01430 Hsp33 protein BF89_2451 PF03309 Type III pantothenate kinase BF89_2452 PF06480 FtsH Extracellular BF89_2452 PF01434 Peptidase family M41 BF89_2452 PF17862 AAA+ lid domain BF89_2452 PF00004 ATPase family associated with various cellular activities (AAA) BF89_2454 PF09179 TilS substrate binding domain BF89_2454 PF01171 PP-loop family BF89_2454 PF11734 TilS substrate C-terminal domain BF89_2455 PF07228 Stage II sporulation protein E (SpoIIE) BF89_2458 PF00575 S1 RNA binding domain BF89_246 PF00202 Aminotransferase class-III BF89_2460 PF09578 Spore cortex protein YabQ (Spore_YabQ) BF89_2461 PF07873 YabP family BF89_2462 PF01479 S4 domain BF89_2463 PF03819 MazG nucleotide pyrophosphohydrolase domain BF89_2463 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF89_2464 PF14667 Polysaccharide biosynthesis C-terminal domain BF89_2464 PF01943 Polysaccharide biosynthesis protein BF89_2465 PF15714 Stage V sporulation protein T C-terminal, transcription factor BF89_2465 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF89_2466 PF02559 CarD-like/TRCF domain BF89_2466 PF00270 DEAD/DEAH box helicase BF89_2466 PF17757 UvrB interaction domain BF89_2466 PF03461 TRCF domain BF89_2466 PF00271 Helicase conserved C-terminal domain BF89_2468 PF01195 Peptidyl-tRNA hydrolase BF89_2469 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF89_2469 PF14572 Phosphoribosyl synthetase-associated domain BF89_2470 PF00132 Bacterial transferase hexapeptide (six repeats) BF89_2470 PF00483 Nucleotidyl transferase BF89_2471 PF04026 SpoVG BF89_2472 PF01042 Endoribonuclease L-PSP BF89_2473 PF00156 Phosphoribosyl transferase domain BF89_2473 PF09182 Bacterial purine repressor, N-terminal BF89_2474 PF08544 GHMP kinases C terminal BF89_2474 PF00288 GHMP kinases N terminal domain BF89_2475 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF89_2476 PF06257 Biofilm formation stimulator VEG BF89_2477 PF05582 YabG peptidase U57 BF89_2478 PF00398 Ribosomal RNA adenine dimethylase BF89_2479 PF13331 Domain of unknown function (DUF4093) BF89_2479 PF13662 Toprim domain BF89_248 PF09385 Histidine kinase N terminal BF89_2480 PF01026 TatD related DNase BF89_2481 PF09334 tRNA synthetases class I (M) BF89_2481 PF08264 Anticodon-binding domain of tRNA BF89_2481 PF01588 Putative tRNA binding domain BF89_2482 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF89_2482 PF18277 AbrB C-terminal domain BF89_2483 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF89_2484 PF01541 GIY-YIG catalytic domain BF89_2485 PF05175 Methyltransferase small domain BF89_2486 PF06156 Initiation control protein YabA BF89_2487 PF04468 PSP1 C-terminal conserved region BF89_2488 PF09115 DNA polymerase III, delta subunit, C terminal BF89_2489 PF02223 Thymidylate kinase BF89_249 PF07997 Protein of unknown function (DUF1694) BF89_2490 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF89_2490 PF01276 Orn/Lys/Arg decarboxylase, major domain BF89_2498 PF07441 SigmaK-factor processing regulatory protein BofA BF89_2499 PF10704 Protein of unknown function (DUF2508) BF89_25 PF00395 S-layer homology domain BF89_25 PF01520 N-acetylmuramoyl-L-alanine amidase BF89_250 PF00171 Aldehyde dehydrogenase family BF89_2500 PF13662 Toprim domain BF89_2500 PF02132 RecR protein BF89_2501 PF02575 YbaB/EbfC DNA-binding family BF89_2502 PF12169 DNA polymerase III subunits gamma and tau domain III BF89_2503 PF14437 MafB19-like deaminase BF89_2504 PF00857 Isochorismatase family BF89_2505 PF01712 Deoxynucleoside kinase BF89_2506 PF01712 Deoxynucleoside kinase BF89_2509 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF89_2509 PF02403 Seryl-tRNA synthetase N-terminal domain BF89_251 PF00571 CBS domain BF89_251 PF03471 Transporter associated domain BF89_251 PF01595 Cyclin M transmembrane N-terminal domain BF89_2510 PF01174 SNO glutamine amidotransferase family BF89_2511 PF01680 SOR/SNZ family BF89_2512 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_2512 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_2513 PF00478 IMP dehydrogenase / GMP reductase domain BF89_2513 PF00571 CBS domain BF89_2514 PF14175 YaaC-like Protein BF89_2521 PF00521 DNA gyrase/topoisomerase IV, subunit A BF89_2521 PF03989 DNA gyrase C-terminal domain, beta-propeller BF89_2522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2522 PF00204 DNA gyrase B BF89_2522 PF00986 DNA gyrase B subunit, carboxyl terminus BF89_2522 PF01751 Toprim domain BF89_2523 PF02463 RecF/RecN/SMC N terminal domain BF89_2525 PF02768 DNA polymerase III beta subunit, C-terminal domain BF89_2525 PF02767 DNA polymerase III beta subunit, central domain BF89_2525 PF00712 DNA polymerase III beta subunit, N-terminal domain BF89_2526 PF00308 Bacterial dnaA protein BF89_2526 PF11638 DnaA N-terminal domain BF89_2526 PF08299 Bacterial dnaA protein helix-turn-helix BF89_2527 PF00468 Ribosomal protein L34 BF89_2528 PF00825 Ribonuclease P BF89_2529 PF02096 60Kd inner membrane protein BF89_2530 PF14804 Jag N-terminus BF89_2530 PF01424 R3H domain BF89_2531 PF10396 GTP-binding protein TrmE N-terminus BF89_2531 PF12631 MnmE helical domain BF89_2531 PF01926 50S ribosome-binding GTPase BF89_2532 PF13932 GidA associated domain BF89_2532 PF01134 Glucose inhibited division protein A BF89_2533 PF02527 rRNA small subunit methyltransferase G BF89_2534 PF17762 HTH domain found in ParB protein BF89_2534 PF02195 ParB-like nuclease domain BF89_2535 PF13614 AAA domain BF89_2536 PF02195 ParB-like nuclease domain BF89_2536 PF17762 HTH domain found in ParB protein BF89_2537 PF06866 Protein of unknown function (DUF1256) BF89_2538 PF00924 Mechanosensitive ion channel BF89_2539 PF06107 Bacterial protein of unknown function (DUF951) BF89_2540 PF01926 50S ribosome-binding GTPase BF89_2540 PF06071 Protein of unknown function (DUF933) BF89_2541 PF01250 Ribosomal protein S6 BF89_2542 PF00436 Single-strand binding protein family BF89_2543 PF01084 Ribosomal protein S18 BF89_2544 PF09991 Predicted membrane protein (DUF2232) BF89_2545 PF02272 DHHA1 domain BF89_2545 PF01368 DHH family BF89_2546 PF01281 Ribosomal protein L9, N-terminal domain BF89_2546 PF03948 Ribosomal protein L9, C-terminal domain BF89_2547 PF00772 DnaB-like helicase N terminal domain BF89_2547 PF03796 DnaB-like helicase C terminal domain BF89_2548 PF00709 Adenylosuccinate synthetase BF89_2553 PF00486 Transcriptional regulatory protein, C terminal BF89_2553 PF00072 Response regulator receiver domain BF89_2554 PF00672 HAMP domain BF89_2554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2554 PF00512 His Kinase A (phospho-acceptor) domain BF89_2554 PF13426 PAS domain BF89_2555 PF07435 YycH protein BF89_2556 PF09648 YycH protein BF89_2557 PF00753 Metallo-beta-lactamase superfamily BF89_2558 PF13180 PDZ domain BF89_2560 PF02590 Predicted SPOUT methyltransferase BF89_2562 PF01432 Peptidase family M3 BF89_2562 PF08439 Oligopeptidase F BF89_2563 PF00478 IMP dehydrogenase / GMP reductase domain BF89_2565 PF03880 DbpA RNA binding domain BF89_2565 PF00270 DEAD/DEAH box helicase BF89_2565 PF00271 Helicase conserved C-terminal domain BF89_2567 PF03006 Haemolysin-III related BF89_2568 PF16363 GDP-mannose 4,6 dehydratase BF89_257 PF13520 Amino acid permease BF89_2570 PF02293 AmiS/UreI family transporter BF89_2572 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF89_2572 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF89_2573 PF02898 Nitric oxide synthase, oxygenase domain BF89_2574 PF02028 BCCT, betaine/carnitine/choline family transporter BF89_2575 PF07690 Major Facilitator Superfamily BF89_2576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2576 PF06580 Histidine kinase BF89_2576 PF07694 5TMR of 5TMR-LYT BF89_2576 PF13492 GAF domain BF89_2577 PF04397 LytTr DNA-binding domain BF89_2577 PF00072 Response regulator receiver domain BF89_2578 PF03788 LrgA family BF89_2579 PF04172 LrgB-like family BF89_258 PF00528 Binding-protein-dependent transport system inner membrane component BF89_2580 PF01594 AI-2E family transporter BF89_2581 PF01641 SelR domain BF89_2581 PF01625 Peptide methionine sulfoxide reductase BF89_2582 PF00873 AcrB/AcrD/AcrF family BF89_2583 PF00440 Bacterial regulatory proteins, tetR family BF89_2584 PF00535 Glycosyl transferase family 2 BF89_2589 PF00005 ABC transporter BF89_2589 PF12848 ABC transporter BF89_259 PF00005 ABC transporter BF89_259 PF00571 CBS domain BF89_2590 PF00535 Glycosyl transferase family 2 BF89_2592 PF03061 Thioesterase superfamily BF89_2594 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2596 PF03458 UPF0126 domain BF89_2599 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF89_2600 PF07690 Major Facilitator Superfamily BF89_2601 PF00072 Response regulator receiver domain BF89_2601 PF04397 LytTr DNA-binding domain BF89_2602 PF13722 5TM C-terminal transporter carbon starvation CstA BF89_2602 PF02554 Carbon starvation protein CstA BF89_2603 PF04328 Selenoprotein, putative BF89_2604 PF07694 5TMR of 5TMR-LYT BF89_2604 PF00990 Diguanylate cyclase, GGDEF domain BF89_2605 PF08543 Phosphomethylpyrimidine kinase BF89_2606 PF13185 GAF domain BF89_2606 PF07730 Histidine kinase BF89_2607 PF13185 GAF domain BF89_2607 PF07730 Histidine kinase BF89_2608 PF00072 Response regulator receiver domain BF89_2608 PF00196 Bacterial regulatory proteins, luxR family BF89_2609 PF02525 Flavodoxin-like fold BF89_2610 PF00027 Cyclic nucleotide-binding domain BF89_2611 PF13419 Haloacid dehalogenase-like hydrolase BF89_2613 PF01053 Cys/Met metabolism PLP-dependent enzyme BF89_2614 PF04204 Homoserine O-succinyltransferase BF89_2615 PF00742 Homoserine dehydrogenase BF89_2615 PF01842 ACT domain BF89_2615 PF03447 Homoserine dehydrogenase, NAD binding domain BF89_2617 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF89_2617 PF00356 Bacterial regulatory proteins, lacI family BF89_2618 PF13472 GDSL-like Lipase/Acylhydrolase family BF89_2619 PF00005 ABC transporter BF89_262 PF03358 NADPH-dependent FMN reductase BF89_2620 PF12679 ABC-2 family transporter protein BF89_2621 PF03167 Uracil DNA glycosylase superfamily BF89_2622 PF12823 Domain of unknown function (DUF3817) BF89_2624 PF00860 Permease family BF89_2625 PF02254 TrkA-N domain BF89_2625 PF07885 Ion channel BF89_2627 PF04241 Protein of unknown function (DUF423) BF89_2628 PF09671 Spore coat protein (Spore_GerQ) BF89_2629 PF07486 Cell Wall Hydrolase BF89_2630 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_2630 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_2632 PF01515 Phosphate acetyl/butaryl transferase BF89_2633 PF03099 Biotin/lipoate A/B protein ligase family BF89_2636 PF07293 Protein of unknown function (DUF1450) BF89_2637 PF01032 FecCD transport family BF89_2638 PF01032 FecCD transport family BF89_2639 PF00005 ABC transporter BF89_2640 PF01497 Periplasmic binding protein BF89_2641 PF01966 HD domain BF89_2642 PF01361 Tautomerase enzyme BF89_2643 PF02163 Peptidase family M50 BF89_2644 PF08741 YwhD family BF89_2645 PF00912 Transglycosylase BF89_2645 PF00905 Penicillin binding protein transpeptidase domain BF89_2646 PF03009 Glycerophosphoryl diester phosphodiesterase family BF89_2647 PF13411 MerR HTH family regulatory protein BF89_2648 PF07690 Major Facilitator Superfamily BF89_2649 PF17284 Spermidine synthase tetramerisation domain BF89_265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF89_265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF89_2650 PF00491 Arginase family BF89_2653 PF17676 LD-carboxypeptidase C-terminal domain BF89_2653 PF02016 LD-carboxypeptidase N-terminal domain BF89_2654 PF09148 Domain of unknown function (DUF1934) BF89_2655 PF00750 tRNA synthetases class I (R) BF89_2655 PF05746 DALR anticodon binding domain BF89_2655 PF03485 Arginyl tRNA synthetase N terminal domain BF89_2656 PF08281 Sigma-70, region 4 BF89_2656 PF04542 Sigma-70 region 2 BF89_266 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF89_266 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF89_2660 PF02225 PA domain BF89_2660 PF04389 Peptidase family M28 BF89_2661 PF01473 Putative cell wall binding repeat BF89_2661 PF02324 Glycosyl hydrolase family 70 BF89_2663 PF00557 Metallopeptidase family M24 BF89_2664 PF00005 ABC transporter BF89_2666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2666 PF07730 Histidine kinase BF89_2667 PF00072 Response regulator receiver domain BF89_2667 PF00196 Bacterial regulatory proteins, luxR family BF89_2671 PF00990 Diguanylate cyclase, GGDEF domain BF89_2671 PF00563 EAL domain BF89_2671 PF03707 Bacterial signalling protein N terminal repeat BF89_2672 PF03851 UV-endonuclease UvdE BF89_2673 PF13091 PLD-like domain BF89_2674 PF13183 4Fe-4S dicluster domain BF89_2674 PF02754 Cysteine-rich domain BF89_2675 PF02803 Thiolase, C-terminal domain BF89_2675 PF00108 Thiolase, N-terminal domain BF89_2676 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF89_2676 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF89_2677 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF89_2677 PF02770 Acyl-CoA dehydrogenase, middle domain BF89_2677 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF89_2678 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF89_2678 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF89_2678 PF02770 Acyl-CoA dehydrogenase, middle domain BF89_2680 PF05066 HB1, ASXL, restriction endonuclease HTH domain BF89_2681 PF06418 CTP synthase N-terminus BF89_2681 PF00117 Glutamine amidotransferase class-I BF89_2682 PF10740 Domain of unknown function (DUF2529) BF89_2683 PF00072 Response regulator receiver domain BF89_2684 PF01116 Fructose-bisphosphate aldolase class-II BF89_2685 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF89_2686 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF89_2687 PF07497 Rho termination factor, RNA-binding domain BF89_2687 PF07498 Rho termination factor, N-terminal domain BF89_2687 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF89_2688 PF01197 Ribosomal protein L31 BF89_2689 PF00265 Thymidine kinase BF89_269 PF00144 Beta-lactamase BF89_2690 PF00472 RF-1 domain BF89_2690 PF03462 PCRF domain BF89_2691 PF17827 PrmC N-terminal domain BF89_2691 PF13847 Methyltransferase domain BF89_2692 PF09551 Stage II sporulation protein R (spore_II_R) BF89_2694 PF03481 Putative GTP-binding controlling metal-binding BF89_2694 PF01300 Telomere recombination BF89_2695 PF02659 Putative manganese efflux pump BF89_2697 PF01613 Flavin reductase like domain BF89_2698 PF07681 DoxX BF89_2699 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF89_27 PF02557 D-alanyl-D-alanine carboxypeptidase BF89_2700 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF89_2701 PF02502 Ribose/Galactose Isomerase BF89_2702 PF04260 Protein of unknown function (DUF436) BF89_2703 PF00464 Serine hydroxymethyltransferase BF89_2706 PF03899 ATP synthase I chain BF89_2707 PF00119 ATP synthase A chain BF89_2708 PF00137 ATP synthase subunit C BF89_2709 PF00430 ATP synthase B/B' CF(0) BF89_2710 PF00213 ATP synthase delta (OSCP) subunit BF89_2711 PF00306 ATP synthase alpha/beta chain, C terminal domain BF89_2711 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF89_2711 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF89_2712 PF00231 ATP synthase BF89_2713 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF89_2713 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF89_2714 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF89_2714 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BF89_2717 PF00563 EAL domain BF89_2717 PF00990 Diguanylate cyclase, GGDEF domain BF89_2717 PF03707 Bacterial signalling protein N terminal repeat BF89_2718 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BF89_2719 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BF89_272 PF00107 Zinc-binding dehydrogenase BF89_272 PF08240 Alcohol dehydrogenase GroES-like domain BF89_2720 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BF89_2721 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BF89_2722 PF00146 NADH dehydrogenase BF89_2724 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BF89_2725 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BF89_2726 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF89_2726 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BF89_2726 PF00361 Proton-conducting membrane transporter BF89_2727 PF00361 Proton-conducting membrane transporter BF89_2728 PF00361 Proton-conducting membrane transporter BF89_2729 PF06612 Protein of unknown function (DUF1146) BF89_273 PF01380 SIS domain BF89_273 PF01418 Helix-turn-helix domain, rpiR family BF89_2731 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF89_2732 PF08486 Stage II sporulation protein BF89_2733 PF00005 ABC transporter BF89_2734 PF00072 Response regulator receiver domain BF89_2734 PF04397 LytTr DNA-binding domain BF89_2735 PF00005 ABC transporter BF89_2737 PF01551 Peptidase family M23 BF89_2739 PF12116 Stage III sporulation protein D BF89_2747 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF89_2747 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF89_2747 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF89_2748 PF01061 ABC-2 type transporter BF89_2749 PF00005 ABC transporter BF89_2749 PF08239 Bacterial SH3 domain BF89_275 PF00072 Response regulator receiver domain BF89_275 PF00196 Bacterial regulatory proteins, luxR family BF89_2750 PF02350 UDP-N-acetylglucosamine 2-epimerase BF89_2751 PF07977 FabA-like domain BF89_2752 PF03816 Cell envelope-related transcriptional attenuator domain BF89_2753 PF16363 GDP-mannose 4,6 dehydratase BF89_2754 PF00486 Transcriptional regulatory protein, C terminal BF89_2754 PF00072 Response regulator receiver domain BF89_2755 PF00512 His Kinase A (phospho-acceptor) domain BF89_2755 PF00989 PAS fold BF89_2755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2755 PF16736 Single Cache-like BF89_2758 PF07690 Major Facilitator Superfamily BF89_276 PF13185 GAF domain BF89_276 PF07730 Histidine kinase BF89_2762 PF00005 ABC transporter BF89_2763 PF02687 FtsX-like permease family BF89_2763 PF12704 MacB-like periplasmic core domain BF89_2764 PF04893 Yip1 domain BF89_2765 PF04542 Sigma-70 region 2 BF89_2765 PF04545 Sigma-70, region 4 BF89_277 PF00924 Mechanosensitive ion channel BF89_2771 PF12419 SNF2 Helicase protein BF89_2771 PF00176 SNF2 family N-terminal domain BF89_2771 PF00271 Helicase conserved C-terminal domain BF89_2772 PF04434 SWIM zinc finger BF89_2777 PF01476 LysM domain BF89_2777 PF06725 3D domain BF89_2778 PF02028 BCCT, betaine/carnitine/choline family transporter BF89_278 PF00011 Hsp20/alpha crystallin family BF89_2782 PF07662 Na+ dependent nucleoside transporter C-terminus BF89_2782 PF01773 Na+ dependent nucleoside transporter N-terminus BF89_2783 PF00877 NlpC/P60 family BF89_2783 PF01476 LysM domain BF89_2785 PF01063 Amino-transferase class IV BF89_2786 PF00884 Sulfatase BF89_2789 PF09988 Uncharacterized metal-binding protein (DUF2227) BF89_279 PF00293 NUDIX domain BF89_2791 PF02652 L-lactate permease BF89_2792 PF13667 ThiC-associated domain BF89_2792 PF01964 Radical SAM ThiC family BF89_2793 PF02040 Arsenical pump membrane protein BF89_2794 PF02322 Cytochrome bd terminal oxidase subunit II BF89_2795 PF01654 Cytochrome bd terminal oxidase subunit I BF89_2799 PF03466 LysR substrate binding domain BF89_2799 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_280 PF00857 Isochorismatase family BF89_2801 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_2803 PF00375 Sodium:dicarboxylate symporter family BF89_2804 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF89_2805 PF02378 Phosphotransferase system, EIIC BF89_2806 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF89_2807 PF02675 S-adenosylmethionine decarboxylase BF89_2809 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF89_2810 PF02378 Phosphotransferase system, EIIC BF89_2811 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF89_2812 PF11975 Family 4 glycosyl hydrolase C-terminal domain BF89_2812 PF02056 Family 4 glycosyl hydrolase BF89_2813 PF04794 YdjC-like protein BF89_2814 PF02417 Chromate transporter BF89_2816 PF00874 PRD domain BF89_2816 PF00158 Sigma-54 interaction domain BF89_2816 PF03610 PTS system fructose IIA component BF89_2818 PF00953 Glycosyl transferase family 4 BF89_2819 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF89_2819 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF89_2819 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF89_2820 PF02350 UDP-N-acetylglucosamine 2-epimerase BF89_2821 PF03816 Cell envelope-related transcriptional attenuator domain BF89_2822 PF01205 Uncharacterized protein family UPF0029 BF89_2822 PF09186 Domain of unknown function (DUF1949) BF89_2823 PF02645 Uncharacterised protein, DegV family COG1307 BF89_2824 PF01638 HxlR-like helix-turn-helix BF89_2825 PF01476 LysM domain BF89_2825 PF00877 NlpC/P60 family BF89_2826 PF00271 Helicase conserved C-terminal domain BF89_2826 PF04851 Type III restriction enzyme, res subunit BF89_2827 PF00271 Helicase conserved C-terminal domain BF89_2827 PF04851 Type III restriction enzyme, res subunit BF89_2829 PF00313 'Cold-shock' DNA-binding domain BF89_283 PF00881 Nitroreductase family BF89_2830 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF89_2830 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BF89_2831 PF02810 SEC-C motif BF89_2831 PF07517 SecA DEAD-like domain BF89_2831 PF01043 SecA preprotein cross-linking domain BF89_2831 PF07516 SecA Wing and Scaffold domain BF89_2832 PF00472 RF-1 domain BF89_2832 PF03462 PCRF domain BF89_2833 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF89_2834 PF00005 ABC transporter BF89_2835 PF18075 FtsX extracellular domain BF89_2835 PF02687 FtsX-like permease family BF89_2836 PF17820 PDZ domain BF89_2836 PF01471 Putative peptidoglycan binding domain BF89_2836 PF03572 Peptidase family S41 BF89_2837 PF17820 PDZ domain BF89_2838 PF00005 ABC transporter BF89_2838 PF00664 ABC transporter transmembrane region BF89_2839 PF01906 Putative heavy-metal-binding BF89_284 PF01063 Amino-transferase class IV BF89_2841 PF03358 NADPH-dependent FMN reductase BF89_2842 PF00376 MerR family regulatory protein BF89_2842 PF09278 MerR, DNA binding BF89_2843 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_2843 PF03466 LysR substrate binding domain BF89_2844 PF03601 Conserved hypothetical protein 698 BF89_2848 PF13411 MerR HTH family regulatory protein BF89_2848 PF07739 TipAS antibiotic-recognition domain BF89_285 PF01497 Periplasmic binding protein BF89_2851 PF07282 Putative transposase DNA-binding domain BF89_2851 PF01385 Probable transposase BF89_2851 PF12323 Helix-turn-helix domain BF89_2852 PF00271 Helicase conserved C-terminal domain BF89_2852 PF04851 Type III restriction enzyme, res subunit BF89_2852 PF02151 UvrB/uvrC motif BF89_2852 PF12344 Ultra-violet resistance protein B BF89_2852 PF17757 UvrB interaction domain BF89_2853 PF17755 UvrA DNA-binding domain BF89_2853 PF17760 UvrA interaction domain BF89_2853 PF00005 ABC transporter BF89_2855 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BF89_2856 PF02603 HPr Serine kinase N terminus BF89_2856 PF07475 HPr Serine kinase C-terminal domain BF89_2857 PF01790 Prolipoprotein diacylglyceryl transferase BF89_2858 PF13419 Haloacid dehalogenase-like hydrolase BF89_2859 PF14602 Hexapeptide repeat of succinyl-transferase BF89_2861 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_2863 PF00293 NUDIX domain BF89_2864 PF03668 P-loop ATPase protein family BF89_2865 PF01933 Uncharacterised protein family UPF0052 BF89_2866 PF14527 WhiA LAGLIDADG-like domain BF89_2866 PF10298 WhiA N-terminal LAGLIDADG-like domain BF89_2866 PF02650 WhiA C-terminal HTH domain BF89_2867 PF00381 PTS HPr component phosphorylation site BF89_2868 PF00574 Clp protease BF89_2869 PF04239 Protein of unknown function (DUF421) BF89_2871 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF89_2872 PF07451 Stage V sporulation protein AD (SpoVAD) BF89_2873 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF89_2877 PF04552 Sigma-54, DNA binding domain BF89_2877 PF04963 Sigma-54 factor, core binding domain BF89_2877 PF00309 Sigma-54 factor, Activator interacting domain (AID) BF89_2879 PF04198 Putative sugar-binding domain BF89_288 PF00733 Asparagine synthase BF89_288 PF13537 Glutamine amidotransferase domain BF89_2880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF89_2880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF89_2881 PF00162 Phosphoglycerate kinase BF89_2882 PF00121 Triosephosphate isomerase BF89_2883 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF89_2883 PF01676 Metalloenzyme superfamily BF89_2884 PF03952 Enolase, N-terminal domain BF89_2884 PF00113 Enolase, C-terminal TIM barrel domain BF89_2885 PF00589 Phage integrase family BF89_2885 PF02899 Phage integrase, N-terminal SAM-like domain BF89_2889 PF04860 Phage portal protein BF89_289 PF00011 Hsp20/alpha crystallin family BF89_290 PF02630 SCO1/SenC BF89_2906 PF01156 Inosine-uridine preferring nucleoside hydrolase BF89_2907 PF03788 LrgA family BF89_2908 PF04172 LrgB-like family BF89_2909 PF03840 Preprotein translocase SecG subunit BF89_2910 PF12146 Serine aminopeptidase, S33 BF89_2911 PF08206 Ribonuclease B OB domain BF89_2911 PF00575 S1 RNA binding domain BF89_2911 PF00773 RNB domain BF89_2911 PF17876 Cold shock domain BF89_2912 PF01668 SmpB protein BF89_2913 PF00486 Transcriptional regulatory protein, C terminal BF89_2913 PF00072 Response regulator receiver domain BF89_2915 PF01032 FecCD transport family BF89_2916 PF01032 FecCD transport family BF89_2917 PF00005 ABC transporter BF89_292 PF02645 Uncharacterised protein, DegV family COG1307 BF89_2920 PF06146 Phosphate-starvation-inducible E BF89_2921 PF13302 Acetyltransferase (GNAT) domain BF89_2924 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF89_2925 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF89_2927 PF17202 Single cache domain 3 BF89_2927 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2927 PF00672 HAMP domain BF89_2929 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF89_2929 PF01565 FAD binding domain BF89_2930 PF00579 tRNA synthetases class I (W and Y) BF89_2930 PF01479 S4 domain BF89_2931 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_2932 PF07849 Protein of unknown function (DUF1641) BF89_2933 PF01638 HxlR-like helix-turn-helix BF89_2934 PF07690 Major Facilitator Superfamily BF89_2935 PF00248 Aldo/keto reductase family BF89_294 PF00902 Sec-independent protein translocase protein (TatC) BF89_2940 PF13460 NAD(P)H-binding BF89_2941 PF01235 Sodium:alanine symporter family BF89_2942 PF01235 Sodium:alanine symporter family BF89_2943 PF01773 Na+ dependent nucleoside transporter N-terminus BF89_2943 PF07662 Na+ dependent nucleoside transporter C-terminus BF89_2944 PF01773 Na+ dependent nucleoside transporter N-terminus BF89_2944 PF07662 Na+ dependent nucleoside transporter C-terminus BF89_2946 PF04235 Protein of unknown function (DUF418) BF89_2947 PF00210 Ferritin-like domain BF89_2949 PF03641 Possible lysine decarboxylase BF89_295 PF02416 mttA/Hcf106 family BF89_2952 PF00210 Ferritin-like domain BF89_2953 PF01235 Sodium:alanine symporter family BF89_2954 PF02080 TrkA-C domain BF89_2955 PF00999 Sodium/hydrogen exchanger family BF89_2957 PF01047 MarR family BF89_2958 PF02678 Pirin BF89_2958 PF17954 Quercetinase C-terminal cupin domain BF89_2959 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF89_2959 PF01447 Thermolysin metallopeptidase, catalytic domain BF89_2959 PF03413 Peptidase propeptide and YPEB domain BF89_2959 PF07504 Fungalysin/Thermolysin Propeptide Motif BF89_296 PF03006 Haemolysin-III related BF89_2960 PF01883 Iron-sulfur cluster assembly protein BF89_2961 PF02743 Cache domain BF89_2961 PF00672 HAMP domain BF89_2961 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2963 PF09334 tRNA synthetases class I (M) BF89_2963 PF08264 Anticodon-binding domain of tRNA BF89_2965 PF16736 Single Cache-like BF89_2965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_2965 PF00512 His Kinase A (phospho-acceptor) domain BF89_2965 PF00989 PAS fold BF89_2966 PF00486 Transcriptional regulatory protein, C terminal BF89_2966 PF00072 Response regulator receiver domain BF89_2967 PF17969 L,D-transpeptidase C-terminal domain BF89_2967 PF03734 L,D-transpeptidase catalytic domain BF89_2969 PF09335 SNARE associated Golgi protein BF89_297 PF01553 Acyltransferase BF89_2976 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_2976 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_2978 PF02096 60Kd inner membrane protein BF89_298 PF02525 Flavodoxin-like fold BF89_2980 PF13520 Amino acid permease BF89_2981 PF07690 Major Facilitator Superfamily BF89_2985 PF02743 Cache domain BF89_2985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_2985 PF00672 HAMP domain BF89_2986 PF01910 Thiamine-binding protein BF89_2987 PF10835 Protein of unknown function (DUF2573) BF89_2988 PF01619 Proline dehydrogenase BF89_2989 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_2989 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_299 PF00905 Penicillin binding protein transpeptidase domain BF89_299 PF03717 Penicillin-binding Protein dimerisation domain BF89_299 PF05223 NTF2-like N-terminal transpeptidase domain BF89_2990 PF14115 YuzL-like protein BF89_2991 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF89_2991 PF00378 Enoyl-CoA hydratase/isomerase BF89_2991 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF89_2992 PF00108 Thiolase, N-terminal domain BF89_2992 PF02803 Thiolase, C-terminal domain BF89_2993 PF02770 Acyl-CoA dehydrogenase, middle domain BF89_2993 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF89_2993 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF89_2994 PF00753 Metallo-beta-lactamase superfamily BF89_2995 PF00440 Bacterial regulatory proteins, tetR family BF89_2995 PF13305 Tetracyclin repressor-like, C-terminal domain BF89_3 PF00682 HMGL-like BF89_30 PF01381 Helix-turn-helix BF89_300 PF00186 Dihydrofolate reductase BF89_3000 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF89_3000 PF00056 lactate/malate dehydrogenase, NAD binding domain BF89_3009 PF03960 ArsC family BF89_301 PF00303 Thymidylate synthase BF89_3010 PF01597 Glycine cleavage H-protein BF89_3011 PF01751 Toprim domain BF89_3012 PF00085 Thioredoxin BF89_3014 PF00005 ABC transporter BF89_3014 PF09383 NIL domain BF89_3015 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3016 PF03180 NLPA lipoprotein BF89_3017 PF03180 NLPA lipoprotein BF89_3018 PF00005 ABC transporter BF89_3019 PF01458 Uncharacterized protein family (UPF0051) BF89_302 PF00144 Beta-lactamase BF89_302 PF07930 D-aminopeptidase, domain B BF89_3020 PF00266 Aminotransferase class-V BF89_3021 PF01592 NifU-like N terminal domain BF89_3022 PF01458 Uncharacterized protein family (UPF0051) BF89_3023 PF04892 VanZ like family BF89_3024 PF03551 Transcriptional regulator PadR-like family BF89_3025 PF02872 5'-nucleotidase, C-terminal domain BF89_3026 PF08827 Domain of unknown function (DUF1805) BF89_3028 PF01551 Peptidase family M23 BF89_3029 PF04055 Radical SAM superfamily BF89_3029 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BF89_3033 PF10086 YhfC intramembrane metalloprotease BF89_3034 PF13411 MerR HTH family regulatory protein BF89_3034 PF07739 TipAS antibiotic-recognition domain BF89_3035 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF89_3036 PF06265 Protein of unknown function (DUF1027) BF89_3039 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF89_3040 PF01934 Protein of unknown function DUF86 BF89_3042 PF13344 Haloacid dehalogenase-like hydrolase BF89_3043 PF02525 Flavodoxin-like fold BF89_3045 PF04608 Phosphatidylglycerophosphatase A BF89_3048 PF01106 NifU-like domain BF89_3049 PF07315 Protein of unknown function (DUF1462) BF89_3057 PF08274 PhnA Zinc-Ribbon BF89_3057 PF03831 PhnA domain BF89_3058 PF03649 Uncharacterised protein family (UPF0014) BF89_3059 PF00005 ABC transporter BF89_3059 PF00664 ABC transporter transmembrane region BF89_3059 PF03412 Peptidase C39 family BF89_306 PF13419 Haloacid dehalogenase-like hydrolase BF89_3060 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_3061 PF07293 Protein of unknown function (DUF1450) BF89_3062 PF01678 Diaminopimelate epimerase BF89_3063 PF01521 Iron-sulphur cluster biosynthesis BF89_3066 PF04463 Protein of unknown function (DUF523) BF89_3069 PF06445 GyrI-like small molecule binding domain BF89_307 PF14005 YpjP-like protein BF89_3071 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_3072 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_3073 PF13344 Haloacid dehalogenase-like hydrolase BF89_3073 PF00293 NUDIX domain BF89_3075 PF06725 3D domain BF89_3076 PF02789 Cytosol aminopeptidase family, N-terminal domain BF89_3076 PF00883 Cytosol aminopeptidase family, catalytic domain BF89_3077 PF10372 Bacterial membrane-spanning protein N-terminus BF89_3077 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF89_3078 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF89_3078 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF89_3078 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF89_3078 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF89_3079 PF00483 Nucleotidyl transferase BF89_308 PF05975 Bacterial ABC transporter protein EcsB BF89_3081 PF02632 BioY family BF89_3083 PF03061 Thioesterase superfamily BF89_3084 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF89_3084 PF03129 Anticodon binding domain BF89_3087 PF03600 Citrate transporter BF89_3088 PF00929 Exonuclease BF89_3089 PF08810 Kinase associated protein B BF89_309 PF00005 ABC transporter BF89_3092 PF00155 Aminotransferase class I and II BF89_3094 PF00561 alpha/beta hydrolase fold BF89_3094 PF08386 TAP-like protein BF89_3095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF89_3095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF89_3096 PF01037 Lrp/AsnC ligand binding domain BF89_3097 PF00155 Aminotransferase class I and II BF89_3098 PF00575 S1 RNA binding domain BF89_3099 PF04070 Domain of unknown function (DUF378) BF89_31 PF18801 response regulator aspartate phosphatase H, N terminal BF89_3100 PF00342 Phosphoglucose isomerase BF89_3101 PF07885 Ion channel BF89_3101 PF02254 TrkA-N domain BF89_3102 PF08868 YugN-like family BF89_3103 PF02308 MgtC family BF89_3111 PF05697 Bacterial trigger factor protein (TF) BF89_3111 PF05698 Bacterial trigger factor protein (TF) C-terminus BF89_313 PF00583 Acetyltransferase (GNAT) family BF89_3130 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF89_3130 PF00056 lactate/malate dehydrogenase, NAD binding domain BF89_3131 PF00128 Alpha amylase, catalytic domain BF89_3131 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF89_3131 PF02806 Alpha amylase, C-terminal all-beta domain BF89_3132 PF00483 Nucleotidyl transferase BF89_3133 PF00483 Nucleotidyl transferase BF89_3134 PF00534 Glycosyl transferases group 1 BF89_3134 PF08323 Starch synthase catalytic domain BF89_3135 PF00343 Carbohydrate phosphorylase BF89_3139 PF00313 'Cold-shock' DNA-binding domain BF89_314 PF01980 tRNA-methyltransferase O BF89_3140 PF01258 Prokaryotic dksA/traR C4-type zinc finger BF89_3141 PF01040 UbiA prenyltransferase family BF89_3142 PF00425 chorismate binding enzyme BF89_3143 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF89_3143 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF89_3143 PF16582 Middle domain of thiamine pyrophosphate BF89_3144 PF00561 alpha/beta hydrolase fold BF89_3145 PF00378 Enoyl-CoA hydratase/isomerase BF89_3146 PF00501 AMP-binding enzyme BF89_3146 PF13193 AMP-binding enzyme C-terminal domain BF89_3147 PF13378 Enolase C-terminal domain-like BF89_3147 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF89_3148 PF00072 Response regulator receiver domain BF89_3148 PF00486 Transcriptional regulatory protein, C terminal BF89_3149 PF00512 His Kinase A (phospho-acceptor) domain BF89_3149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_315 PF01177 Asp/Glu/Hydantoin racemase BF89_3150 PF02557 D-alanyl-D-alanine carboxypeptidase BF89_3153 PF01979 Amidohydrolase family BF89_3154 PF03841 L-seryl-tRNA selenium transferase BF89_3155 PF07071 KDGP aldolase BF89_3158 PF02447 GntP family permease BF89_316 PF00465 Iron-containing alcohol dehydrogenase BF89_3160 PF02687 FtsX-like permease family BF89_3161 PF02687 FtsX-like permease family BF89_3162 PF00005 ABC transporter BF89_3163 PF02687 FtsX-like permease family BF89_3164 PF02687 FtsX-like permease family BF89_3165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3166 PF00072 Response regulator receiver domain BF89_3166 PF00486 Transcriptional regulatory protein, C terminal BF89_3167 PF06445 GyrI-like small molecule binding domain BF89_3167 PF12833 Helix-turn-helix domain BF89_3168 PF00005 ABC transporter BF89_3169 PF02687 FtsX-like permease family BF89_3170 PF00398 Ribosomal RNA adenine dimethylase BF89_3171 PF09335 SNARE associated Golgi protein BF89_3174 PF00248 Aldo/keto reductase family BF89_3178 PF00781 Diacylglycerol kinase catalytic domain BF89_318 PF13419 Haloacid dehalogenase-like hydrolase BF89_3184 PF00072 Response regulator receiver domain BF89_3184 PF00486 Transcriptional regulatory protein, C terminal BF89_3185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3185 PF00672 HAMP domain BF89_3185 PF00512 His Kinase A (phospho-acceptor) domain BF89_3186 PF09515 Thiamine transporter protein (Thia_YuaJ) BF89_3188 PF07670 Nucleoside recognition BF89_3188 PF07664 Ferrous iron transport protein B C terminus BF89_3188 PF02421 Ferrous iron transport protein B BF89_3188 PF17910 FeoB cytosolic helical domain BF89_319 PF10997 Alternate to MurJ BF89_3192 PF04012 PspA/IM30 family BF89_3197 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_3197 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_3200 PF10676 Spore germination protein gerPA/gerPF BF89_3201 PF02322 Cytochrome bd terminal oxidase subunit II BF89_3202 PF01654 Cytochrome bd terminal oxidase subunit I BF89_3203 PF01809 Putative membrane protein insertion efficiency factor BF89_3204 PF00484 Carbonic anhydrase BF89_3205 PF02664 S-Ribosylhomocysteinase (LuxS) BF89_3209 PF00293 NUDIX domain BF89_3215 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3216 PF00005 ABC transporter BF89_322 PF00209 Sodium:neurotransmitter symporter family BF89_3221 PF00884 Sulfatase BF89_3222 PF00561 alpha/beta hydrolase fold BF89_3222 PF08386 TAP-like protein BF89_3223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3223 PF08447 PAS fold BF89_3223 PF00512 His Kinase A (phospho-acceptor) domain BF89_3223 PF00989 PAS fold BF89_3224 PF00512 His Kinase A (phospho-acceptor) domain BF89_3224 PF13426 PAS domain BF89_3224 PF00989 PAS fold BF89_3224 PF13188 PAS domain BF89_3224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3225 PF01784 NIF3 (NGG1p interacting factor 3) BF89_3231 PF01293 Phosphoenolpyruvate carboxykinase BF89_3232 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF89_3232 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF89_3232 PF02772 S-adenosylmethionine synthetase, central domain BF89_3235 PF00994 Probable molybdopterin binding domain BF89_3236 PF12804 MobA-like NTP transferase domain BF89_3237 PF13439 Glycosyltransferase Family 4 BF89_3237 PF00534 Glycosyl transferases group 1 BF89_3238 PF01569 PAP2 superfamily BF89_3239 PF00132 Bacterial transferase hexapeptide (six repeats) BF89_3240 PF12146 Serine aminopeptidase, S33 BF89_3241 PF10776 Protein of unknown function (DUF2600) BF89_3244 PF01177 Asp/Glu/Hydantoin racemase BF89_3246 PF00005 ABC transporter BF89_3246 PF13732 Domain of unknown function (DUF4162) BF89_3247 PF06962 Putative rRNA methylase BF89_3248 PF16199 Radical_SAM C-terminal domain BF89_3248 PF04055 Radical SAM superfamily BF89_3249 PF10732 Protein of unknown function (DUF2524) BF89_325 PF00672 HAMP domain BF89_325 PF00512 His Kinase A (phospho-acceptor) domain BF89_325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3251 PF07786 Protein of unknown function (DUF1624) BF89_3251 PF04235 Protein of unknown function (DUF418) BF89_3252 PF00005 ABC transporter BF89_3254 PF00589 Phage integrase family BF89_3255 PF02080 TrkA-C domain BF89_3256 PF00999 Sodium/hydrogen exchanger family BF89_3257 PF07690 Major Facilitator Superfamily BF89_3258 PF00133 tRNA synthetases class I (I, L, M and V) BF89_3258 PF13603 Leucyl-tRNA synthetase, Domain 2 BF89_3258 PF09334 tRNA synthetases class I (M) BF89_3258 PF08264 Anticodon-binding domain of tRNA BF89_326 PF00072 Response regulator receiver domain BF89_326 PF00486 Transcriptional regulatory protein, C terminal BF89_3263 PF03845 Spore germination protein BF89_3264 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_3266 PF00561 alpha/beta hydrolase fold BF89_3268 PF00581 Rhodanese-like domain BF89_327 PF00939 Sodium:sulfate symporter transmembrane region BF89_3272 PF06463 Molybdenum Cofactor Synthesis C BF89_3272 PF04055 Radical SAM superfamily BF89_3273 PF00899 ThiF family BF89_3274 PF01967 MoaC family BF89_3275 PF00994 Probable molybdopterin binding domain BF89_3275 PF03454 MoeA C-terminal region (domain IV) BF89_3275 PF03453 MoeA N-terminal region (domain I and II) BF89_3276 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BF89_3277 PF02391 MoaE protein BF89_328 PF02595 Glycerate kinase family BF89_3280 PF06800 Sugar transport protein BF89_3282 PF02559 CarD-like/TRCF domain BF89_3284 PF10957 Sporulation protein Cse60 BF89_3286 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF89_3287 PF01022 Bacterial regulatory protein, arsR family BF89_3288 PF07690 Major Facilitator Superfamily BF89_3290 PF01943 Polysaccharide biosynthesis protein BF89_3290 PF14667 Polysaccharide biosynthesis C-terminal domain BF89_3291 PF01479 S4 domain BF89_3291 PF00849 RNA pseudouridylate synthase BF89_3292 PF08220 DeoR-like helix-turn-helix domain BF89_3293 PF01546 Peptidase family M20/M25/M40 BF89_3294 PF02834 LigT like Phosphoesterase BF89_3295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF89_3295 PF00128 Alpha amylase, catalytic domain BF89_3295 PF17999 Pullulanase N1-terminal domain BF89_3296 PF01636 Phosphotransferase enzyme family BF89_3297 PF14165 YtzH-like protein BF89_3298 PF02390 Putative methyltransferase BF89_3299 PF00753 Metallo-beta-lactamase superfamily BF89_33 PF00149 Calcineurin-like phosphoesterase BF89_33 PF02872 5'-nucleotidase, C-terminal domain BF89_3301 PF05343 M42 glutamyl aminopeptidase BF89_3302 PF01931 Protein of unknown function DUF84 BF89_3303 PF00085 Thioredoxin BF89_3304 PF07285 Protein of unknown function (DUF1444) BF89_3305 PF14794 Domain of unknown function (DUF4479) BF89_3305 PF01588 Putative tRNA binding domain BF89_3307 PF17854 FtsK alpha domain BF89_3307 PF01580 FtsK/SpoIIIE family BF89_3307 PF09397 Ftsk gamma domain BF89_3309 PF08245 Mur ligase middle domain BF89_3309 PF02875 Mur ligase family, glutamate ligase domain BF89_3309 PF01225 Mur ligase family, catalytic domain BF89_3310 PF13302 Acetyltransferase (GNAT) domain BF89_3314 PF02073 Thermophilic metalloprotease (M29) BF89_3316 PF11009 Protein of unknown function (DUF2847) BF89_3317 PF07537 CamS sex pheromone cAM373 precursor BF89_3318 PF00356 Bacterial regulatory proteins, lacI family BF89_3323 PF01741 Large-conductance mechanosensitive channel, MscL BF89_3324 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF89_3325 PF12796 Ankyrin repeats (3 copies) BF89_3326 PF13426 PAS domain BF89_3326 PF00512 His Kinase A (phospho-acceptor) domain BF89_3326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3326 PF00672 HAMP domain BF89_3327 PF00486 Transcriptional regulatory protein, C terminal BF89_3327 PF00072 Response regulator receiver domain BF89_3329 PF00850 Histone deacetylase domain BF89_3330 PF00571 CBS domain BF89_3331 PF00583 Acetyltransferase (GNAT) family BF89_3332 PF00501 AMP-binding enzyme BF89_3332 PF13193 AMP-binding enzyme C-terminal domain BF89_3334 PF04542 Sigma-70 region 2 BF89_3334 PF08281 Sigma-70, region 4 BF89_3336 PF01479 S4 domain BF89_3336 PF00579 tRNA synthetases class I (W and Y) BF89_3339 PF01479 S4 domain BF89_3339 PF00163 Ribosomal protein S4/S9 N-terminal domain BF89_3340 PF01053 Cys/Met metabolism PLP-dependent enzyme BF89_3341 PF13185 GAF domain BF89_3342 PF00440 Bacterial regulatory proteins, tetR family BF89_3343 PF00440 Bacterial regulatory proteins, tetR family BF89_3344 PF00892 EamA-like transporter family BF89_3345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_3345 PF03466 LysR substrate binding domain BF89_3346 PF06160 Septation ring formation regulator, EzrA BF89_3347 PF00266 Aminotransferase class-V BF89_3348 PF02568 Thiamine biosynthesis protein (ThiI) BF89_3348 PF02926 THUMP domain BF89_3349 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF89_3350 PF00501 AMP-binding enzyme BF89_3350 PF13193 AMP-binding enzyme C-terminal domain BF89_3352 PF07969 Amidohydrolase family BF89_3353 PF01513 ATP-NAD kinase BF89_3355 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF89_3356 PF08534 Redoxin BF89_3357 PF02384 N-6 DNA Methylase BF89_3358 PF00871 Acetokinase family BF89_3361 PF12787 EcsC protein family BF89_3362 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_3362 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_3366 PF00764 Arginosuccinate synthase BF89_3367 PF00206 Lyase BF89_3367 PF14698 Argininosuccinate lyase C-terminal BF89_3370 PF00582 Universal stress protein family BF89_3372 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF89_3372 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF89_3374 PF01381 Helix-turn-helix BF89_3376 PF07883 Cupin domain BF89_3377 PF12746 GNAT acetyltransferase BF89_3383 PF11518 Protein of unknown function (DUF3221) BF89_3384 PF01321 Creatinase/Prolidase N-terminal domain BF89_3384 PF00557 Metallopeptidase family M24 BF89_3387 PF03061 Thioesterase superfamily BF89_3387 PF00571 CBS domain BF89_3387 PF07085 DRTGG domain BF89_3387 PF00392 Bacterial regulatory proteins, gntR family BF89_3390 PF14007 YtpI-like protein BF89_3391 PF02272 DHHA1 domain BF89_3391 PF01368 DHH family BF89_3393 PF14034 Sporulation protein YtrH BF89_3394 PF02811 PHP domain BF89_3394 PF14579 Helix-hairpin-helix motif BF89_3394 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF89_3394 PF01336 OB-fold nucleic acid binding domain BF89_3394 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF89_3395 PF00390 Malic enzyme, N-terminal domain BF89_3395 PF03949 Malic enzyme, NAD binding domain BF89_3396 PF00392 Bacterial regulatory proteins, gntR family BF89_3397 PF01039 Carboxyl transferase domain BF89_3397 PF17848 Acetyl-coA carboxylase zinc finger domain BF89_3398 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF89_3399 PF00365 Phosphofructokinase BF89_3400 PF00224 Pyruvate kinase, barrel domain BF89_3400 PF00391 PEP-utilising enzyme, mobile domain BF89_3400 PF02887 Pyruvate kinase, alpha/beta domain BF89_3401 PF04186 FxsA cytoplasmic membrane protein BF89_3402 PF01594 AI-2E family transporter BF89_3403 PF04284 Protein of unknown function (DUF441) BF89_3404 PF00285 Citrate synthase, C-terminal domain BF89_3405 PF00180 Isocitrate/isopropylmalate dehydrogenase BF89_3406 PF00056 lactate/malate dehydrogenase, NAD binding domain BF89_3406 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF89_3409 PF00486 Transcriptional regulatory protein, C terminal BF89_3409 PF00072 Response regulator receiver domain BF89_3410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3410 PF00512 His Kinase A (phospho-acceptor) domain BF89_3410 PF00989 PAS fold BF89_3410 PF16736 Single Cache-like BF89_3411 PF00476 DNA polymerase family A BF89_3411 PF01367 5'-3' exonuclease, C-terminal SAM fold BF89_3411 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF89_3412 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BF89_3412 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BF89_3412 PF06827 Zinc finger found in FPG and IleRS BF89_3413 PF02659 Putative manganese efflux pump BF89_3414 PF01121 Dephospho-CoA kinase BF89_3415 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF89_3415 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF89_3416 PF02675 S-adenosylmethionine decarboxylase BF89_3417 PF03477 ATP cone domain BF89_3418 PF07261 Replication initiation and membrane attachment BF89_3419 PF07319 Primosomal protein DnaI N-terminus BF89_3419 PF01695 IstB-like ATP binding protein BF89_3420 PF08812 YtxC-like family BF89_3421 PF02824 TGS domain BF89_3421 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF89_3421 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF89_3421 PF03129 Anticodon binding domain BF89_3422 PF00707 Translation initiation factor IF-3, C-terminal domain BF89_3422 PF05198 Translation initiation factor IF-3, N-terminal domain BF89_3423 PF01632 Ribosomal protein L35 BF89_3424 PF00453 Ribosomal protein L20 BF89_3426 PF05343 M42 glutamyl aminopeptidase BF89_3427 PF16859 Tetracyclin repressor-like, C-terminal domain BF89_3427 PF00440 Bacterial regulatory proteins, tetR family BF89_3429 PF07690 Major Facilitator Superfamily BF89_3434 PF01966 HD domain BF89_3435 PF14098 Small, acid-soluble spore protein I BF89_3436 PF00588 SpoU rRNA Methylase family BF89_3436 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF89_3437 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF89_3437 PF01409 tRNA synthetases class II core domain (F) BF89_3438 PF03484 tRNA synthetase B5 domain BF89_3438 PF03147 Ferredoxin-fold anticodon binding domain BF89_3438 PF01588 Putative tRNA binding domain BF89_3438 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BF89_3438 PF03483 B3/4 domain BF89_3439 PF00152 tRNA synthetases class II (D, K and N) BF89_3439 PF01336 OB-fold nucleic acid binding domain BF89_3443 PF01351 Ribonuclease HII BF89_3443 PF11858 Domain of unknown function (DUF3378) BF89_3444 PF05164 Cell division protein ZapA BF89_3445 PF02674 Colicin V production protein BF89_3446 PF02811 PHP domain BF89_3446 PF14716 Helix-hairpin-helix domain BF89_3446 PF14791 DNA polymerase beta thumb BF89_3447 PF01713 Smr domain BF89_3447 PF00488 MutS domain V BF89_3449 PF01479 S4 domain BF89_3449 PF00849 RNA pseudouridylate synthase BF89_3450 PF05525 Branched-chain amino acid transport protein BF89_3451 PF05031 Iron Transport-associated domain BF89_3453 PF05031 Iron Transport-associated domain BF89_3454 PF01497 Periplasmic binding protein BF89_3455 PF01032 FecCD transport family BF89_3456 PF00005 ABC transporter BF89_3457 PF04203 Sortase domain BF89_3458 PF03992 Antibiotic biosynthesis monooxygenase BF89_346 PF12538 DNA transporter BF89_346 PF01580 FtsK/SpoIIIE family BF89_3460 PF17785 PUA-like domain BF89_3460 PF10672 S-adenosylmethionine-dependent methyltransferase BF89_3461 PF09962 Uncharacterized conserved protein (DUF2196) BF89_3463 PF00072 Response regulator receiver domain BF89_3463 PF00486 Transcriptional regulatory protein, C terminal BF89_3464 PF00512 His Kinase A (phospho-acceptor) domain BF89_3464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3465 PF00005 ABC transporter BF89_3471 PF05163 DinB family BF89_3472 PF01032 FecCD transport family BF89_3473 PF01497 Periplasmic binding protein BF89_3475 PF00501 AMP-binding enzyme BF89_3475 PF13193 AMP-binding enzyme C-terminal domain BF89_3476 PF08359 YsiA-like protein, C-terminal region BF89_3476 PF00440 Bacterial regulatory proteins, tetR family BF89_3477 PF00378 Enoyl-CoA hydratase/isomerase BF89_3478 PF01012 Electron transfer flavoprotein domain BF89_3479 PF00766 Electron transfer flavoprotein FAD-binding domain BF89_3479 PF01012 Electron transfer flavoprotein domain BF89_3480 PF00085 Thioredoxin BF89_3481 PF01541 GIY-YIG catalytic domain BF89_3481 PF08459 UvrC Helix-hairpin-helix N-terminal BF89_3481 PF02151 UvrB/uvrC motif BF89_3482 PF10702 Protein of unknown function (DUF2507) BF89_3483 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BF89_3484 PF02910 Fumarate reductase flavoprotein C-term BF89_3484 PF00890 FAD binding domain BF89_3485 PF13183 4Fe-4S dicluster domain BF89_3485 PF13085 2Fe-2S iron-sulfur cluster binding domain BF89_3486 PF03061 Thioesterase superfamily BF89_3487 PF02557 D-alanyl-D-alanine carboxypeptidase BF89_3488 PF01618 MotA/TolQ/ExbB proton channel family BF89_3489 PF00691 OmpA family BF89_3489 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF89_3490 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF89_3490 PF00691 OmpA family BF89_3491 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BF89_3492 PF13732 Domain of unknown function (DUF4162) BF89_3492 PF00005 ABC transporter BF89_3494 PF02082 Transcriptional regulator BF89_3495 PF00230 Major intrinsic protein BF89_3496 PF13536 Putative multidrug resistance efflux transporter BF89_3497 PF07883 Cupin domain BF89_3497 PF01381 Helix-turn-helix BF89_3498 PF04024 PspC domain BF89_350 PF01336 OB-fold nucleic acid binding domain BF89_350 PF00152 tRNA synthetases class II (D, K and N) BF89_3501 PF00072 Response regulator receiver domain BF89_3501 PF04397 LytTr DNA-binding domain BF89_3502 PF07694 5TMR of 5TMR-LYT BF89_3502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3502 PF06580 Histidine kinase BF89_3503 PF00005 ABC transporter BF89_3503 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_3504 PF00005 ABC transporter BF89_3504 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF89_3505 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3507 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_3508 PF07969 Amidohydrolase family BF89_3509 PF07969 Amidohydrolase family BF89_351 PF08245 Mur ligase middle domain BF89_351 PF01225 Mur ligase family, catalytic domain BF89_351 PF02875 Mur ligase family, glutamate ligase domain BF89_3511 PF00860 Permease family BF89_3512 PF00196 Bacterial regulatory proteins, luxR family BF89_3515 PF00440 Bacterial regulatory proteins, tetR family BF89_3517 PF07690 Major Facilitator Superfamily BF89_3518 PF01177 Asp/Glu/Hydantoin racemase BF89_3519 PF10646 Sporulation and spore germination BF89_3520 PF03725 3' exoribonuclease family, domain 2 BF89_3520 PF01138 3' exoribonuclease family, domain 1 BF89_3521 PF01725 Ham1 family BF89_3522 PF12850 Calcineurin-like phosphoesterase superfamily domain BF89_3526 PF08000 Bacterial PH domain BF89_3526 PF11724 YvbH-like oligomerisation region BF89_3530 PF05698 Bacterial trigger factor protein (TF) C-terminus BF89_3530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF89_3530 PF05697 Bacterial trigger factor protein (TF) BF89_3531 PF06689 ClpX C4-type zinc finger BF89_3531 PF10431 C-terminal, D2-small domain, of ClpB protein BF89_3531 PF07724 AAA domain (Cdc48 subfamily) BF89_3532 PF00004 ATPase family associated with various cellular activities (AAA) BF89_3532 PF05362 Lon protease (S16) C-terminal proteolytic domain BF89_3533 PF02190 ATP-dependent protease La (LON) substrate-binding domain BF89_3533 PF05362 Lon protease (S16) C-terminal proteolytic domain BF89_3533 PF00004 ATPase family associated with various cellular activities (AAA) BF89_3534 PF01926 50S ribosome-binding GTPase BF89_3535 PF02566 OsmC-like protein BF89_3536 PF01047 MarR family BF89_3537 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BF89_3537 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BF89_3537 PF01488 Shikimate / quinate 5-dehydrogenase BF89_3538 PF01578 Cytochrome C assembly protein BF89_3539 PF03900 Porphobilinogen deaminase, C-terminal domain BF89_3539 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BF89_354 PF08264 Anticodon-binding domain of tRNA BF89_354 PF00133 tRNA synthetases class I (I, L, M and V) BF89_3540 PF02602 Uroporphyrinogen-III synthase HemD BF89_3541 PF00490 Delta-aminolevulinic acid dehydratase BF89_3542 PF00202 Aminotransferase class-III BF89_3543 PF01476 LysM domain BF89_3545 PF00133 tRNA synthetases class I (I, L, M and V) BF89_3545 PF08264 Anticodon-binding domain of tRNA BF89_3545 PF10458 Valyl tRNA synthetase tRNA binding arm BF89_3546 PF02875 Mur ligase family, glutamate ligase domain BF89_3546 PF08245 Mur ligase middle domain BF89_3548 PF02545 Maf-like protein BF89_3549 PF04002 RadC-like JAB domain BF89_3551 PF04085 rod shape-determining protein MreC BF89_3553 PF03775 Septum formation inhibitor MinC, C-terminal domain BF89_3554 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF89_3555 PF01551 Peptidase family M23 BF89_3556 PF02163 Peptidase family M50 BF89_3557 PF10150 Ribonuclease E/G family BF89_3557 PF00575 S1 RNA binding domain BF89_3558 PF00829 Ribosomal prokaryotic L21 protein BF89_3559 PF04327 Cysteine protease Prp BF89_3560 PF01016 Ribosomal L27 protein BF89_3561 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF89_3561 PF14682 Sporulation initiation phospho-transferase B, C-terminal BF89_3562 PF09269 Domain of unknown function (DUF1967) BF89_3562 PF01018 GTP1/OBG BF89_3562 PF01926 50S ribosome-binding GTPase BF89_3563 PF00486 Transcriptional regulatory protein, C terminal BF89_3563 PF00072 Response regulator receiver domain BF89_3565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3566 PF00005 ABC transporter BF89_3567 PF02687 FtsX-like permease family BF89_3568 PF02687 FtsX-like permease family BF89_3569 PF00800 Prephenate dehydratase BF89_3569 PF01842 ACT domain BF89_3570 PF03473 MOSC domain BF89_3570 PF03475 3-alpha domain BF89_3571 PF08279 HTH domain BF89_3571 PF02829 3H domain BF89_3572 PF00266 Aminotransferase class-V BF89_3573 PF00890 FAD binding domain BF89_3573 PF02910 Fumarate reductase flavoprotein C-term BF89_3574 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF89_3574 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF89_3575 PF02445 Quinolinate synthetase A protein BF89_3576 PF01476 LysM domain BF89_3579 PF01022 Bacterial regulatory protein, arsR family BF89_3580 PF00892 EamA-like transporter family BF89_3581 PF00892 EamA-like transporter family BF89_3583 PF01497 Periplasmic binding protein BF89_3584 PF01330 RuvA N terminal domain BF89_3584 PF07499 RuvA, C-terminal domain BF89_3585 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF89_3585 PF05491 RuvB C-terminal winged helix domain BF89_3585 PF17864 RuvB AAA lid domain BF89_3586 PF11146 Protein of unknown function (DUF2905) BF89_3587 PF02547 Queuosine biosynthesis protein BF89_3588 PF01702 Queuine tRNA-ribosyltransferase BF89_3589 PF02699 Preprotein translocase subunit BF89_3591 PF04239 Protein of unknown function (DUF421) BF89_3592 PF14667 Polysaccharide biosynthesis C-terminal domain BF89_3592 PF01943 Polysaccharide biosynthesis protein BF89_3593 PF13797 Post-transcriptional regulator BF89_3594 PF02355 Protein export membrane protein BF89_3594 PF07549 SecD/SecF GG Motif BF89_3595 PF16916 Dimerisation domain of Zinc Transporter BF89_3595 PF01545 Cation efflux family BF89_3596 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BF89_3596 PF17768 RecJ OB domain BF89_3596 PF02272 DHHA1 domain BF89_3596 PF01368 DHH family BF89_3597 PF00156 Phosphoribosyl transferase domain BF89_3598 PF04607 Region found in RelA / SpoT proteins BF89_3598 PF02824 TGS domain BF89_3598 PF13291 ACT domain BF89_3599 PF02580 D-Tyr-tRNA(Tyr) deacylase BF89_360 PF05746 DALR anticodon binding domain BF89_360 PF03485 Arginyl tRNA synthetase N terminal domain BF89_360 PF00750 tRNA synthetases class I (R) BF89_3601 PF13393 Histidyl-tRNA synthetase BF89_3601 PF03129 Anticodon binding domain BF89_3602 PF00152 tRNA synthetases class II (D, K and N) BF89_3602 PF02938 GAD domain BF89_3602 PF01336 OB-fold nucleic acid binding domain BF89_3603 PF00899 ThiF family BF89_3605 PF16193 AAA C-terminal domain BF89_3605 PF12002 MgsA AAA+ ATPase C terminal BF89_3605 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF89_3606 PF02082 Transcriptional regulator BF89_3607 PF00266 Aminotransferase class-V BF89_361 PF04445 Putative SAM-dependent methyltransferase BF89_3610 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BF89_3610 PF14490 Helix-hairpin-helix containing domain BF89_3610 PF13538 UvrD-like helicase C-terminal domain BF89_3614 PF01594 AI-2E family transporter BF89_3616 PF01411 tRNA synthetases class II (A) BF89_3616 PF02272 DHHA1 domain BF89_3616 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF89_3617 PF06135 IreB regulatory phosphoprotein BF89_3618 PF03652 Holliday junction resolvase BF89_3619 PF06949 Protein of unknown function (DUF1292) BF89_362 PF06491 Disulphide isomerase BF89_3620 PF02618 YceG-like family BF89_3624 PF00485 Phosphoribulokinase / Uridine kinase family BF89_3625 PF03449 Transcription elongation factor, N-terminal BF89_3625 PF01272 Transcription elongation factor, GreA/GreB, C-term BF89_3626 PF03717 Penicillin-binding Protein dimerisation domain BF89_3626 PF00905 Penicillin binding protein transpeptidase domain BF89_3629 PF08241 Methyltransferase domain BF89_3630 PF01048 Phosphorylase superfamily BF89_3631 PF00291 Pyridoxal-phosphate dependent enzyme BF89_3632 PF01053 Cys/Met metabolism PLP-dependent enzyme BF89_3633 PF00171 Aldehyde dehydrogenase family BF89_3633 PF00465 Iron-containing alcohol dehydrogenase BF89_3634 PF14143 YrhC-like protein BF89_3635 PF01497 Periplasmic binding protein BF89_3636 PF01032 FecCD transport family BF89_3637 PF00005 ABC transporter BF89_364 PF13769 Virulence factor BF89_364 PF08712 Scaffold protein Nfu/NifU N terminal BF89_3643 PF07681 DoxX BF89_3644 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_3646 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BF89_3647 PF05922 Peptidase inhibitor I9 BF89_3647 PF02225 PA domain BF89_3647 PF13860 FlgD Ig-like domain BF89_3647 PF00082 Subtilase family BF89_365 PF01494 FAD binding domain BF89_3654 PF00561 alpha/beta hydrolase fold BF89_3654 PF08386 TAP-like protein BF89_3656 PF00245 Alkaline phosphatase BF89_3658 PF04607 Region found in RelA / SpoT proteins BF89_3659 PF00881 Nitroreductase family BF89_366 PF00440 Bacterial regulatory proteins, tetR family BF89_3660 PF00471 Ribosomal protein L33 BF89_3661 PF16244 Domain of unknown function (DUF4901) BF89_3663 PF04542 Sigma-70 region 2 BF89_3663 PF04545 Sigma-70, region 4 BF89_3664 PF02666 Phosphatidylserine decarboxylase BF89_3666 PF01926 50S ribosome-binding GTPase BF89_3667 PF08501 Shikimate dehydrogenase substrate binding domain BF89_3667 PF01488 Shikimate / quinate 5-dehydrogenase BF89_3667 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BF89_3668 PF01985 CRS1 / YhbY (CRM) domain BF89_3669 PF01467 Cytidylyltransferase-like BF89_367 PF00436 Single-strand binding protein family BF89_3670 PF01966 HD domain BF89_3672 PF13649 Methyltransferase domain BF89_3673 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF89_3673 PF03807 NADP oxidoreductase coenzyme F420-dependent BF89_3674 PF10531 SLBB domain BF89_3675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF89_3676 PF00753 Metallo-beta-lactamase superfamily BF89_3676 PF03772 Competence protein BF89_3676 PF13567 Domain of unknown function (DUF4131) BF89_3677 PF14141 YqzM-like protein BF89_3678 PF06144 DNA polymerase III, delta subunit BF89_3679 PF01649 Ribosomal protein S20 BF89_3680 PF03418 Germination protease BF89_3682 PF00679 Elongation factor G C-terminus BF89_3682 PF00009 Elongation factor Tu GTP binding domain BF89_3682 PF06421 GTP-binding protein LepA C-terminus BF89_3682 PF03144 Elongation factor Tu domain 2 BF89_3683 PF01638 HxlR-like helix-turn-helix BF89_3684 PF06969 HemN C-terminal domain BF89_3684 PF04055 Radical SAM superfamily BF89_3685 PF01628 HrcA protein C terminal domain BF89_3686 PF01025 GrpE BF89_3687 PF00012 Hsp70 protein BF89_3688 PF00226 DnaJ domain BF89_3688 PF01556 DnaJ C terminal domain BF89_3688 PF00684 DnaJ central domain BF89_3690 PF04452 RNA methyltransferase BF89_3691 PF01938 TRAM domain BF89_3691 PF04055 Radical SAM superfamily BF89_3691 PF00919 Uncharacterized protein family UPF0004 BF89_3692 PF01165 Ribosomal protein S21 BF89_3693 PF09424 Yqey-like protein BF89_3694 PF07873 YabP family BF89_3695 PF06898 Putative stage IV sporulation protein YqfD BF89_3696 PF02562 PhoH-like protein BF89_3697 PF01966 HD domain BF89_3697 PF07697 7TM-HD extracellular BF89_3697 PF07698 7TM receptor with intracellular HD hydrolase BF89_3698 PF02130 Uncharacterized protein family UPF0054 BF89_3699 PF01219 Prokaryotic diacylglycerol kinase BF89_370 PF16326 ABC transporter C-terminal domain BF89_370 PF00005 ABC transporter BF89_370 PF12848 ABC transporter BF89_3700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF89_3701 PF07650 KH domain BF89_3701 PF01926 50S ribosome-binding GTPase BF89_3703 PF02565 Recombination protein O C terminal BF89_3703 PF11967 Recombination protein O N terminal BF89_3704 PF00571 CBS domain BF89_3704 PF08279 HTH domain BF89_3705 PF03618 Kinase/pyrophosphorylase BF89_3706 PF08275 DNA primase catalytic core, N-terminal domain BF89_3706 PF10410 DnaB-helicase binding domain of primase BF89_3706 PF01807 CHC2 zinc finger BF89_3707 PF04545 Sigma-70, region 4 BF89_3707 PF03979 Sigma-70 factor, region 1.1 BF89_3707 PF04542 Sigma-70 region 2 BF89_3707 PF00140 Sigma-70 factor, region 1.2 BF89_3707 PF04539 Sigma-70 region 3 BF89_3708 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF89_3709 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BF89_371 PF01966 HD domain BF89_3710 PF01784 NIF3 (NGG1p interacting factor 3) BF89_3711 PF02401 LytB protein BF89_3713 PF00270 DEAD/DEAH box helicase BF89_3713 PF00271 Helicase conserved C-terminal domain BF89_3714 PF01261 Xylose isomerase-like TIM barrel BF89_3715 PF11116 Protein of unknown function (DUF2624) BF89_3716 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_3716 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_3717 PF00005 ABC transporter BF89_3718 PF00950 ABC 3 transport family BF89_3719 PF01475 Ferric uptake regulator family BF89_3720 PF04551 GcpE protein BF89_3724 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF89_3724 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF89_3725 PF07690 Major Facilitator Superfamily BF89_3727 PF12849 PBP superfamily domain BF89_3728 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3729 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3730 PF00005 ABC transporter BF89_3731 PF01895 PhoU domain BF89_3732 PF00483 Nucleotidyl transferase BF89_3733 PF00471 Ribosomal protein L33 BF89_3734 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF89_3735 PF06014 Bacterial protein of unknown function (DUF910) BF89_3736 PF00480 ROK family BF89_3737 PF10958 Protein of unknown function (DUF2759) BF89_3738 PF00753 Metallo-beta-lactamase superfamily BF89_374 PF01510 N-acetylmuramoyl-L-alanine amidase BF89_3740 PF01022 Bacterial regulatory protein, arsR family BF89_3742 PF01053 Cys/Met metabolism PLP-dependent enzyme BF89_3743 PF01053 Cys/Met metabolism PLP-dependent enzyme BF89_3744 PF02219 Methylenetetrahydrofolate reductase BF89_3744 PF02574 Homocysteine S-methyltransferase BF89_3745 PF02574 Homocysteine S-methyltransferase BF89_3745 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF89_3745 PF02607 B12 binding domain BF89_3745 PF00809 Pterin binding enzyme BF89_3745 PF02310 B12 binding domain BF89_3746 PF02574 Homocysteine S-methyltransferase BF89_3746 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF89_3746 PF02310 B12 binding domain BF89_3746 PF00809 Pterin binding enzyme BF89_3746 PF02607 B12 binding domain BF89_3747 PF03033 Glycosyltransferase family 28 N-terminal domain BF89_3747 PF04101 Glycosyltransferase family 28 C-terminal domain BF89_3754 PF00375 Sodium:dicarboxylate symporter family BF89_3755 PF11117 Protein of unknown function (DUF2626) BF89_3757 PF00437 Type II/IV secretion system protein BF89_3758 PF00482 Type II secretion system (T2SS), protein F BF89_3759 PF07963 Prokaryotic N-terminal methylation motif BF89_3760 PF07963 Prokaryotic N-terminal methylation motif BF89_3765 PF01202 Shikimate kinase BF89_3766 PF14038 YqzE-like protein BF89_377 PF04232 Stage V sporulation protein S (SpoVS) BF89_3770 PF11079 Bacterial protein YqhG of unknown function BF89_3771 PF00176 SNF2 family N-terminal domain BF89_3771 PF00271 Helicase conserved C-terminal domain BF89_3772 PF01571 Aminomethyltransferase folate-binding domain BF89_3772 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF89_3773 PF02347 Glycine cleavage system P-protein BF89_3774 PF02347 Glycine cleavage system P-protein BF89_3777 PF00392 Bacterial regulatory proteins, gntR family BF89_3778 PF00005 ABC transporter BF89_3785 PF00893 Small Multidrug Resistance protein BF89_3786 PF00893 Small Multidrug Resistance protein BF89_3788 PF00356 Bacterial regulatory proteins, lacI family BF89_3788 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF89_3789 PF00581 Rhodanese-like domain BF89_3790 PF03099 Biotin/lipoate A/B protein ligase family BF89_3793 PF02742 Iron dependent repressor, metal binding and dimerisation domain BF89_3793 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF89_3795 PF13419 Haloacid dehalogenase-like hydrolase BF89_3796 PF07136 Protein of unknown function (DUF1385) BF89_3797 PF11085 Conserved membrane protein YqhR BF89_3798 PF01220 Dehydroquinase class II BF89_3799 PF01321 Creatinase/Prolidase N-terminal domain BF89_3799 PF00557 Metallopeptidase family M24 BF89_38 PF01116 Fructose-bisphosphate aldolase class-II BF89_3800 PF08207 Elongation factor P (EF-P) KOW-like domain BF89_3800 PF09285 Elongation factor P, C-terminal BF89_3800 PF01132 Elongation factor P (EF-P) OB domain BF89_3805 PF09548 Stage III sporulation protein AB (spore_III_AB) BF89_3806 PF06686 Stage III sporulation protein AC/AD protein family BF89_3807 PF06686 Stage III sporulation protein AC/AD protein family BF89_3808 PF09546 Stage III sporulation protein AE (spore_III_AE) BF89_3809 PF09581 Stage III sporulation protein AF (Spore_III_AF) BF89_3811 PF12685 SpoIIIAH-like protein BF89_3813 PF00364 Biotin-requiring enzyme BF89_3814 PF02785 Biotin carboxylase C-terminal domain BF89_3814 PF00289 Biotin carboxylase, N-terminal domain BF89_3814 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF89_3815 PF03780 Asp23 family, cell envelope-related function BF89_3816 PF01029 NusB family BF89_3817 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF89_3817 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF89_3818 PF13742 OB-fold nucleic acid binding domain BF89_3818 PF02601 Exonuclease VII, large subunit BF89_3819 PF02609 Exonuclease VII small subunit BF89_3820 PF00348 Polyprenyl synthetase BF89_3821 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF89_3821 PF02779 Transketolase, pyrimidine binding domain BF89_3821 PF02780 Transketolase, C-terminal domain BF89_3822 PF01728 FtsJ-like methyltransferase BF89_3822 PF01479 S4 domain BF89_3823 PF02863 Arginine repressor, C-terminal domain BF89_3823 PF01316 Arginine repressor, DNA binding domain BF89_3824 PF13476 AAA domain BF89_3825 PF17820 PDZ domain BF89_3825 PF05580 SpoIVB peptidase S55 BF89_3826 PF08769 Sporulation initiation factor Spo0A C terminal BF89_3826 PF00072 Response regulator receiver domain BF89_3828 PF14174 YycC-like protein BF89_3829 PF03009 Glycerophosphoryl diester phosphodiesterase family BF89_3831 PF02954 Bacterial regulatory protein, Fis family BF89_3831 PF00158 Sigma-54 interaction domain BF89_3831 PF00989 PAS fold BF89_3832 PF01515 Phosphate acetyl/butaryl transferase BF89_3833 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF89_3833 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF89_3834 PF00871 Acetokinase family BF89_3835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF89_3835 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_3836 PF00676 Dehydrogenase E1 component BF89_3837 PF02780 Transketolase, C-terminal domain BF89_3837 PF02779 Transketolase, pyrimidine binding domain BF89_3838 PF02817 e3 binding domain BF89_3838 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF89_3838 PF00364 Biotin-requiring enzyme BF89_3839 PF01098 Cell cycle protein BF89_3840 PF00293 NUDIX domain BF89_3840 PF09297 NADH pyrophosphatase zinc ribbon domain BF89_3841 PF11208 Protein of unknown function (DUF2992) BF89_3842 PF06491 Disulphide isomerase BF89_3843 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF89_3844 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3845 PF00005 ABC transporter BF89_3846 PF11728 Putative aromatic acid exporter C-terminal domain BF89_3846 PF06081 Aromatic acid exporter family member 1 BF89_3847 PF03734 L,D-transpeptidase catalytic domain BF89_3849 PF13302 Acetyltransferase (GNAT) domain BF89_385 PF04405 Domain of Unknown function (DUF542) BF89_385 PF01814 Hemerythrin HHE cation binding domain BF89_3850 PF01546 Peptidase family M20/M25/M40 BF89_3850 PF07687 Peptidase dimerisation domain BF89_3852 PF00817 impB/mucB/samB family BF89_3852 PF11799 impB/mucB/samB family C-terminal domain BF89_3852 PF11798 IMS family HHH motif BF89_3854 PF00753 Metallo-beta-lactamase superfamily BF89_3854 PF12706 Beta-lactamase superfamily domain BF89_3855 PF03315 Serine dehydratase beta chain BF89_3855 PF01842 ACT domain BF89_3856 PF03313 Serine dehydratase alpha chain BF89_3857 PF03807 NADP oxidoreductase coenzyme F420-dependent BF89_3857 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF89_3858 PF00753 Metallo-beta-lactamase superfamily BF89_3859 PF00106 short chain dehydrogenase BF89_386 PF18267 Rubredoxin NAD+ reductase C-terminal domain BF89_386 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF89_386 PF04324 BFD-like [2Fe-2S] binding domain BF89_386 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF89_386 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_3861 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF89_3861 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF89_3862 PF01960 ArgJ family BF89_3863 PF00696 Amino acid kinase family BF89_3864 PF00202 Aminotransferase class-III BF89_3865 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF89_3865 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF89_3868 PF13404 AsnC-type helix-turn-helix domain BF89_3868 PF01037 Lrp/AsnC ligand binding domain BF89_387 PF00355 Rieske [2Fe-2S] domain BF89_3870 PF00149 Calcineurin-like phosphoesterase BF89_3870 PF02872 5'-nucleotidase, C-terminal domain BF89_3873 PF00202 Aminotransferase class-III BF89_3875 PF00155 Aminotransferase class I and II BF89_3876 PF12697 Alpha/beta hydrolase family BF89_3876 PF08241 Methyltransferase domain BF89_3877 PF13847 Methyltransferase domain BF89_3878 PF06968 Biotin and Thiamin Synthesis associated domain BF89_3878 PF04055 Radical SAM superfamily BF89_3879 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF89_388 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF89_3881 PF00925 GTP cyclohydrolase II BF89_3881 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BF89_3882 PF00677 Lumazine binding domain BF89_3883 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF89_3883 PF01872 RibD C-terminal domain BF89_3885 PF10827 Protein of unknown function (DUF2552) BF89_3886 PF12146 Serine aminopeptidase, S33 BF89_3887 PF00583 Acetyltransferase (GNAT) family BF89_3888 PF00356 Bacterial regulatory proteins, lacI family BF89_3889 PF13726 Na+-H+ antiporter family BF89_3889 PF03553 Na+/H+ antiporter family BF89_389 PF01903 CbiX BF89_3890 PF12146 Serine aminopeptidase, S33 BF89_3892 PF00149 Calcineurin-like phosphoesterase BF89_3892 PF00746 LPXTG cell wall anchor motif BF89_3892 PF02872 5'-nucleotidase, C-terminal domain BF89_3892 PF00565 Staphylococcal nuclease homologue BF89_3894 PF13673 Acetyltransferase (GNAT) domain BF89_3894 PF04229 GrpB protein BF89_3895 PF00248 Aldo/keto reductase family BF89_3896 PF00248 Aldo/keto reductase family BF89_3897 PF13072 Mother cell inhibitor of FtsZ BF89_3898 PF00293 NUDIX domain BF89_39 PF01261 Xylose isomerase-like TIM barrel BF89_3900 PF01944 Stage II sporulation protein M BF89_3901 PF01475 Ferric uptake regulator family BF89_3902 PF14004 Protein of unknown function (DUF4227) BF89_3903 PF00589 Phage integrase family BF89_3903 PF02899 Phage integrase, N-terminal SAM-like domain BF89_3905 PF01676 Metalloenzyme superfamily BF89_3906 PF01048 Phosphorylase superfamily BF89_3907 PF00591 Glycosyl transferase family, a/b domain BF89_3907 PF02885 Glycosyl transferase family, helical bundle domain BF89_3907 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF89_3908 PF01544 CorA-like Mg2+ transporter protein BF89_3909 PF00860 Permease family BF89_3911 PF01047 MarR family BF89_3914 PF00005 ABC transporter BF89_3915 PF00392 Bacterial regulatory proteins, gntR family BF89_3916 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_3916 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_3917 PF01740 STAS domain BF89_3918 PF13581 Histidine kinase-like ATPase domain BF89_3919 PF04542 Sigma-70 region 2 BF89_3919 PF04539 Sigma-70 region 3 BF89_3919 PF04545 Sigma-70, region 4 BF89_3920 PF00209 Sodium:neurotransmitter symporter family BF89_3922 PF12164 Stage V sporulation protein AA BF89_3923 PF13782 Stage V sporulation protein AB BF89_3924 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF89_3925 PF07451 Stage V sporulation protein AD (SpoVAD) BF89_3926 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF89_3927 PF14097 Stage V sporulation protein AE1 BF89_3928 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_393 PF07690 Major Facilitator Superfamily BF89_3930 PF06207 Protein of unknown function (DUF1002) BF89_3931 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF89_3932 PF00583 Acetyltransferase (GNAT) family BF89_3933 PF03745 Domain of unknown function (DUF309) BF89_3935 PF02616 Segregation and condensation protein ScpA BF89_3936 PF04079 Segregation and condensation complex subunit ScpB BF89_3938 PF01979 Amidohydrolase family BF89_3939 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF89_3942 PF03123 CAT RNA binding domain BF89_3942 PF00874 PRD domain BF89_3943 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF89_3943 PF00367 phosphotransferase system, EIIB BF89_3943 PF02378 Phosphotransferase system, EIIC BF89_3944 PF00381 PTS HPr component phosphorylation site BF89_3945 PF02896 PEP-utilising enzyme, TIM barrel domain BF89_3945 PF00391 PEP-utilising enzyme, mobile domain BF89_3945 PF05524 PEP-utilising enzyme, N-terminal BF89_3948 PF00881 Nitroreductase family BF89_3949 PF00990 Diguanylate cyclase, GGDEF domain BF89_395 PF02391 MoaE protein BF89_3950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF89_3950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF89_3951 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF89_3951 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF89_3954 PF03079 ARD/ARD' family BF89_3955 PF00596 Class II Aldolase and Adducin N-terminal domain BF89_3957 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BF89_3957 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BF89_3958 PF00155 Aminotransferase class I and II BF89_3959 PF00795 Carbon-nitrogen hydrolase BF89_396 PF03454 MoeA C-terminal region (domain IV) BF89_396 PF03453 MoeA N-terminal region (domain I and II) BF89_396 PF00994 Probable molybdopterin binding domain BF89_3960 PF01636 Phosphotransferase enzyme family BF89_3964 PF03551 Transcriptional regulator PadR-like family BF89_397 PF00899 ThiF family BF89_3970 PF00293 NUDIX domain BF89_3971 PF02803 Thiolase, C-terminal domain BF89_3971 PF00108 Thiolase, N-terminal domain BF89_3979 PF03459 TOBE domain BF89_3979 PF00005 ABC transporter BF89_3979 PF17912 MalK OB fold domain BF89_398 PF06463 Molybdenum Cofactor Synthesis C BF89_398 PF04055 Radical SAM superfamily BF89_3980 PF00128 Alpha amylase, catalytic domain BF89_3980 PF16657 Maltogenic Amylase, C-terminal domain BF89_3981 PF00128 Alpha amylase, catalytic domain BF89_3981 PF02903 Alpha amylase, N-terminal ig-like domain BF89_3981 PF16657 Maltogenic Amylase, C-terminal domain BF89_3982 PF13416 Bacterial extracellular solute-binding protein BF89_3983 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3984 PF00528 Binding-protein-dependent transport system inner membrane component BF89_3985 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF89_3985 PF00356 Bacterial regulatory proteins, lacI family BF89_3986 PF00155 Aminotransferase class I and II BF89_3988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_3988 PF00512 His Kinase A (phospho-acceptor) domain BF89_399 PF00325 Bacterial regulatory proteins, crp family BF89_399 PF00027 Cyclic nucleotide-binding domain BF89_3990 PF14040 Deoxyribonuclease NucA/NucB BF89_3992 PF01717 Cobalamin-independent synthase, Catalytic domain BF89_3992 PF08267 Cobalamin-independent synthase, N-terminal domain BF89_3994 PF07690 Major Facilitator Superfamily BF89_3999 PF14177 YkyB-like protein BF89_4 PF00364 Biotin-requiring enzyme BF89_40 PF01261 Xylose isomerase-like TIM barrel BF89_4000 PF02541 Ppx/GppA phosphatase family BF89_4001 PF02503 Polyphosphate kinase middle domain BF89_4001 PF13089 Polyphosphate kinase N-terminal domain BF89_4001 PF17941 Polyphosphate kinase C-terminal domain 1 BF89_4001 PF13090 Polyphosphate kinase C-terminal domain 2 BF89_4002 PF13089 Polyphosphate kinase N-terminal domain BF89_4002 PF17941 Polyphosphate kinase C-terminal domain 1 BF89_4002 PF13090 Polyphosphate kinase C-terminal domain 2 BF89_4002 PF02503 Polyphosphate kinase middle domain BF89_4004 PF00149 Calcineurin-like phosphoesterase BF89_4004 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF89_4006 PF00563 EAL domain BF89_4006 PF10388 EAL-domain associated signalling protein domain BF89_4009 PF08796 Protein of unknown function (DUF1797) BF89_401 PF00005 ABC transporter BF89_4011 PF04308 Ribonuclease H-like BF89_4014 PF03466 LysR substrate binding domain BF89_4014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_4015 PF14602 Hexapeptide repeat of succinyl-transferase BF89_4015 PF00132 Bacterial transferase hexapeptide (six repeats) BF89_4015 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BF89_4016 PF07687 Peptidase dimerisation domain BF89_4016 PF01546 Peptidase family M20/M25/M40 BF89_4018 PF02254 TrkA-N domain BF89_4018 PF02080 TrkA-C domain BF89_4019 PF17770 Ribonuclease J C-terminal domain BF89_4019 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF89_4019 PF00753 Metallo-beta-lactamase superfamily BF89_402 PF00155 Aminotransferase class I and II BF89_402 PF00392 Bacterial regulatory proteins, gntR family BF89_4022 PF01327 Polypeptide deformylase BF89_4024 PF00676 Dehydrogenase E1 component BF89_4025 PF02780 Transketolase, C-terminal domain BF89_4025 PF02779 Transketolase, pyrimidine binding domain BF89_4026 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF89_4026 PF00364 Biotin-requiring enzyme BF89_4026 PF02817 e3 binding domain BF89_4027 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_4027 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF89_403 PF02665 Nitrate reductase gamma subunit BF89_4035 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF89_4035 PF01276 Orn/Lys/Arg decarboxylase, major domain BF89_4036 PF05256 Uncharacterised protein family (UPF0223) BF89_4037 PF06335 Protein of unknown function (DUF1054) BF89_4039 PF00459 Inositol monophosphatase family BF89_404 PF02613 Nitrate reductase delta subunit BF89_4042 PF14036 YlaH-like protein BF89_4044 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BF89_4046 PF13638 PIN domain BF89_4046 PF02562 PhoH-like protein BF89_4048 PF07408 Protein of unknown function (DUF1507) BF89_4049 PF01098 Cell cycle protein BF89_405 PF14711 Respiratory nitrate reductase beta C-terminal BF89_405 PF13247 4Fe-4S dicluster domain BF89_4050 PF00364 Biotin-requiring enzyme BF89_4050 PF02436 Conserved carboxylase domain BF89_4050 PF00289 Biotin carboxylase, N-terminal domain BF89_4050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF89_4050 PF02785 Biotin carboxylase C-terminal domain BF89_4050 PF00682 HMGL-like BF89_4051 PF02628 Cytochrome oxidase assembly protein BF89_4052 PF01040 UbiA prenyltransferase family BF89_4053 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BF89_4053 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF89_4053 PF00034 Cytochrome c BF89_4054 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF89_4055 PF00510 Cytochrome c oxidase subunit III BF89_4056 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BF89_4057 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BF89_4058 PF00795 Carbon-nitrogen hydrolase BF89_4059 PF08868 YugN-like family BF89_406 PF00384 Molybdopterin oxidoreductase BF89_406 PF01568 Molydopterin dinucleotide binding domain BF89_406 PF14710 Respiratory nitrate reductase alpha N-terminal BF89_4060 PF00188 Cysteine-rich secretory protein family BF89_4060 PF14504 CAP-associated N-terminal BF89_4061 PF14071 Putative coat protein BF89_4062 PF14003 YlbE-like protein BF89_4063 PF00300 Histidine phosphatase superfamily (branch 1) BF89_4064 PF06133 Control of competence regulator ComK, YlbF/YmcA BF89_4065 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BF89_4069 PF07670 Nucleoside recognition BF89_4070 PF01467 Cytidylyltransferase-like BF89_4071 PF01734 Patatin-like phospholipase BF89_4072 PF13180 PDZ domain BF89_4072 PF05362 Lon protease (S16) C-terminal proteolytic domain BF89_4073 PF05636 HIGH Nucleotidyl Transferase BF89_4074 PF00589 Phage integrase family BF89_4074 PF14659 Phage integrase, N-terminal SAM-like domain BF89_4078 PF01381 Helix-turn-helix BF89_4082 PF01381 Helix-turn-helix BF89_4087 PF07319 Primosomal protein DnaI N-terminus BF89_4087 PF01695 IstB-like ATP binding protein BF89_409 PF07726 ATPase family associated with various cellular activities (AAA) BF89_409 PF17863 AAA lid domain BF89_4092 PF04539 Sigma-70 region 3 BF89_4092 PF04542 Sigma-70 region 2 BF89_4092 PF04545 Sigma-70, region 4 BF89_4098 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_41 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF89_41 PF00205 Thiamine pyrophosphate enzyme, central domain BF89_41 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF89_410 PF01882 Protein of unknown function DUF58 BF89_4108 PF00589 Phage integrase family BF89_4109 PF10137 Predicted nucleotide-binding protein containing TIR-like domain BF89_411 PF13559 Domain of unknown function (DUF4129) BF89_411 PF01841 Transglutaminase-like superfamily BF89_411 PF11992 Domain of unknown function (DUF3488) BF89_4113 PF03354 Phage Terminase BF89_4115 PF00574 Clp protease BF89_412 PF00255 Glutathione peroxidase BF89_4132 PF05105 Bacteriophage holin family BF89_4133 PF01510 N-acetylmuramoyl-L-alanine amidase BF89_4133 PF12123 N-acetylmuramoyl-l-alanine amidase BF89_4143 PF02620 Large ribosomal RNA subunit accumulation protein YceD BF89_4144 PF01783 Ribosomal L32p protein family BF89_4146 PF00583 Acetyltransferase (GNAT) family BF89_4147 PF02558 Ketopantoate reductase PanE/ApbA BF89_4147 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF89_4148 PF10079 Bacillithiol biosynthesis BshC BF89_4149 PF01795 MraW methylase family BF89_4150 PF04977 Septum formation initiator BF89_4152 PF03793 PASTA domain BF89_4152 PF03717 Penicillin-binding Protein dimerisation domain BF89_4152 PF00905 Penicillin binding protein transpeptidase domain BF89_4153 PF02875 Mur ligase family, glutamate ligase domain BF89_4153 PF08245 Mur ligase middle domain BF89_4153 PF01225 Mur ligase family, catalytic domain BF89_4154 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BF89_4154 PF00953 Glycosyl transferase family 4 BF89_4155 PF02875 Mur ligase family, glutamate ligase domain BF89_4155 PF08245 Mur ligase middle domain BF89_4156 PF01098 Cell cycle protein BF89_4157 PF04101 Glycosyltransferase family 28 C-terminal domain BF89_4157 PF03033 Glycosyltransferase family 28 N-terminal domain BF89_4158 PF01565 FAD binding domain BF89_4158 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF89_4159 PF03799 Cell division protein FtsQ BF89_4159 PF08478 POTRA domain, FtsQ-type BF89_4160 PF02491 SHS2 domain inserted in FTSA BF89_4161 PF00091 Tubulin/FtsZ family, GTPase domain BF89_4161 PF12327 FtsZ family, C-terminal domain BF89_4162 PF03419 Sporulation factor SpoIIGA BF89_4163 PF04545 Sigma-70, region 4 BF89_4163 PF04542 Sigma-70 region 2 BF89_4164 PF04545 Sigma-70, region 4 BF89_4164 PF04539 Sigma-70 region 3 BF89_4164 PF04542 Sigma-70 region 2 BF89_4165 PF05239 PRC-barrel domain BF89_4167 PF01168 Alanine racemase, N-terminal domain BF89_4168 PF04472 Cell division protein SepF BF89_4169 PF02325 YGGT family BF89_417 PF08281 Sigma-70, region 4 BF89_417 PF04542 Sigma-70 region 2 BF89_4170 PF01479 S4 domain BF89_4170 PF17774 Putative RNA-binding domain in YlmH BF89_4171 PF05103 DivIVA protein BF89_4172 PF00133 tRNA synthetases class I (I, L, M and V) BF89_4172 PF06827 Zinc finger found in FPG and IleRS BF89_4172 PF08264 Anticodon-binding domain of tRNA BF89_4174 PF01252 Signal peptidase (SPase) II BF89_4175 PF00849 RNA pseudouridylate synthase BF89_4175 PF01479 S4 domain BF89_4176 PF00156 Phosphoribosyl transferase domain BF89_4177 PF00860 Permease family BF89_4178 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF89_4178 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF89_4179 PF01979 Amidohydrolase family BF89_418 PF00107 Zinc-binding dehydrogenase BF89_418 PF08240 Alcohol dehydrogenase GroES-like domain BF89_4180 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF89_4180 PF00117 Glutamine amidotransferase class-I BF89_4181 PF02142 MGS-like domain BF89_4181 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF89_4181 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF89_4182 PF00175 Oxidoreductase NAD-binding domain BF89_4182 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF89_4183 PF01180 Dihydroorotate dehydrogenase BF89_4184 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF89_4185 PF00156 Phosphoribosyl transferase domain BF89_4191 PF00557 Metallopeptidase family M24 BF89_4191 PF01321 Creatinase/Prolidase N-terminal domain BF89_4193 PF00690 Cation transporter/ATPase, N-terminus BF89_4193 PF00689 Cation transporting ATPase, C-terminus BF89_4194 PF08340 Domain of unknown function (DUF1732) BF89_4194 PF03755 YicC-like family, N-terminal region BF89_4195 PF04025 Domain of unknown function (DUF370) BF89_4196 PF00625 Guanylate kinase BF89_4197 PF01192 RNA polymerase Rpb6 BF89_4198 PF02441 Flavoprotein BF89_4198 PF04127 DNA / pantothenate metabolism flavoprotein BF89_4199 PF00271 Helicase conserved C-terminal domain BF89_4199 PF18074 Primosomal protein N C-terminal domain BF89_4199 PF17764 3′ DNA-binding domain (3′BD) BF89_4199 PF04851 Type III restriction enzyme, res subunit BF89_4199 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BF89_42 PF00171 Aldehyde dehydrogenase family BF89_420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4200 PF01327 Polypeptide deformylase BF89_4201 PF00551 Formyl transferase BF89_4201 PF02911 Formyl transferase, C-terminal domain BF89_4202 PF01189 16S rRNA methyltransferase RsmB/F BF89_4202 PF01029 NusB family BF89_4203 PF04055 Radical SAM superfamily BF89_4205 PF03793 PASTA domain BF89_4205 PF00069 Protein kinase domain BF89_4206 PF16745 RsgA N-terminal domain BF89_4206 PF03193 RsgA GTPase BF89_4207 PF00834 Ribulose-phosphate 3 epimerase family BF89_4208 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BF89_4208 PF04263 Thiamin pyrophosphokinase, catalytic domain BF89_4209 PF00830 Ribosomal L28 family BF89_421 PF01261 Xylose isomerase-like TIM barrel BF89_4210 PF03780 Asp23 family, cell envelope-related function BF89_4211 PF13684 Dihydroxyacetone kinase family BF89_4211 PF02734 DAK2 domain BF89_4212 PF17191 RecG wedge domain BF89_4212 PF00270 DEAD/DEAH box helicase BF89_4212 PF00271 Helicase conserved C-terminal domain BF89_4213 PF03061 Thioesterase superfamily BF89_4214 PF02504 Fatty acid synthesis protein BF89_4215 PF00698 Acyl transferase domain BF89_4217 PF00550 Phosphopantetheine attachment site BF89_4218 PF00035 Double-stranded RNA binding motif BF89_4218 PF14622 Ribonuclease-III-like BF89_4219 PF02463 RecF/RecN/SMC N terminal domain BF89_4219 PF06470 SMC proteins Flexible Hinge Domain BF89_422 PF00271 Helicase conserved C-terminal domain BF89_422 PF00270 DEAD/DEAH box helicase BF89_4220 PF02881 SRP54-type protein, helical bundle domain BF89_4220 PF00448 SRP54-type protein, GTPase domain BF89_4221 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BF89_4222 PF02881 SRP54-type protein, helical bundle domain BF89_4222 PF00448 SRP54-type protein, GTPase domain BF89_4222 PF02978 Signal peptide binding domain BF89_4223 PF00886 Ribosomal protein S16 BF89_4225 PF05239 PRC-barrel domain BF89_4225 PF01782 RimM N-terminal domain BF89_4226 PF01746 tRNA (Guanine-1)-methyltransferase BF89_4227 PF01245 Ribosomal protein L19 BF89_4228 PF10502 Signal peptidase, peptidase S26 BF89_4229 PF01926 50S ribosome-binding GTPase BF89_4230 PF01351 Ribonuclease HII BF89_4231 PF00549 CoA-ligase BF89_4231 PF08442 ATP-grasp domain BF89_4232 PF00549 CoA-ligase BF89_4232 PF02629 CoA binding domain BF89_4235 PF01751 Toprim domain BF89_4235 PF01396 Topoisomerase DNA binding C4 zinc finger BF89_4235 PF01131 DNA topoisomerase BF89_4236 PF01134 Glucose inhibited division protein A BF89_4237 PF00589 Phage integrase family BF89_4237 PF02899 Phage integrase, N-terminal SAM-like domain BF89_4238 PF00227 Proteasome subunit BF89_4239 PF00004 ATPase family associated with various cellular activities (AAA) BF89_4239 PF10431 C-terminal, D2-small domain, of ClpB protein BF89_4239 PF07724 AAA domain (Cdc48 subfamily) BF89_424 PF01268 Formate--tetrahydrofolate ligase BF89_4240 PF08222 CodY helix-turn-helix domain BF89_4240 PF06018 CodY GAF-like domain BF89_4241 PF00318 Ribosomal protein S2 BF89_4242 PF00889 Elongation factor TS BF89_4243 PF00696 Amino acid kinase family BF89_4244 PF01765 Ribosome recycling factor BF89_4245 PF01255 Putative undecaprenyl diphosphate synthase BF89_4247 PF13288 DXP reductoisomerase C-terminal domain BF89_4247 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF89_4247 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF89_4248 PF02163 Peptidase family M50 BF89_4248 PF17820 PDZ domain BF89_4249 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF89_4249 PF04073 Aminoacyl-tRNA editing domain BF89_4249 PF03129 Anticodon binding domain BF89_4250 PF00929 Exonuclease BF89_4250 PF02811 PHP domain BF89_4250 PF14579 Helix-hairpin-helix motif BF89_4250 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF89_4250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF89_4250 PF11490 DNA polymerase III polC-type N-terminus II BF89_4250 PF14480 DNA polymerase III polC-type N-terminus I BF89_4251 PF17384 RimP C-terminal SH3 domain BF89_4251 PF02576 RimP N-terminal domain BF89_4252 PF08529 NusA N-terminal domain BF89_4252 PF13184 NusA-like KH domain BF89_4252 PF00575 S1 RNA binding domain BF89_4253 PF04296 Protein of unknown function (DUF448) BF89_4254 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF89_4255 PF00009 Elongation factor Tu GTP binding domain BF89_4255 PF11987 Translation-initiation factor 2 BF89_4255 PF04760 Translation initiation factor IF-2, N-terminal region BF89_4256 PF04456 Protein of unknown function (DUF503) BF89_4257 PF02033 Ribosome-binding factor A BF89_4258 PF16198 tRNA pseudouridylate synthase B C-terminal domain BF89_4258 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF89_4259 PF06574 FAD synthetase BF89_4259 PF01687 Riboflavin kinase BF89_426 PF01209 ubiE/COQ5 methyltransferase family BF89_4260 PF00312 Ribosomal protein S15 BF89_4261 PF00013 KH domain BF89_4261 PF00575 S1 RNA binding domain BF89_4261 PF01138 3' exoribonuclease family, domain 1 BF89_4261 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF89_4261 PF03725 3' exoribonuclease family, domain 2 BF89_4262 PF01522 Polysaccharide deacetylase BF89_4263 PF00675 Insulinase (Peptidase family M16) BF89_4263 PF05193 Peptidase M16 inactive domain BF89_4264 PF05239 PRC-barrel domain BF89_4265 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF89_4265 PF16924 Dipicolinate synthase subunit A N-terminal domain BF89_4266 PF02441 Flavoprotein BF89_4267 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF89_4267 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF89_4268 PF00696 Amino acid kinase family BF89_4268 PF13840 ACT domain BF89_4269 PF00701 Dihydrodipicolinate synthetase family BF89_4270 PF17770 Ribonuclease J C-terminal domain BF89_4270 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF89_4270 PF00753 Metallo-beta-lactamase superfamily BF89_4271 PF00574 Clp protease BF89_4272 PF14035 YlzJ-like protein BF89_4273 PF17854 FtsK alpha domain BF89_4273 PF01580 FtsK/SpoIIIE family BF89_4273 PF09397 Ftsk gamma domain BF89_4274 PF00392 Bacterial regulatory proteins, gntR family BF89_4274 PF07702 UTRA domain BF89_4280 PF05193 Peptidase M16 inactive domain BF89_4281 PF05193 Peptidase M16 inactive domain BF89_4281 PF00675 Insulinase (Peptidase family M16) BF89_4283 PF11588 Protein of unknown function (DUF3243) BF89_4284 PF11868 Protein of unknown function (DUF3388) BF89_4285 PF13464 Domain of unknown function (DUF4115) BF89_4286 PF01066 CDP-alcohol phosphatidyltransferase BF89_4287 PF02464 Competence-damaged protein BF89_4287 PF18146 Damage-inducible protein CinA KH domain BF89_4287 PF00994 Probable molybdopterin binding domain BF89_4288 PF00154 recA bacterial DNA recombination protein BF89_4289 PF00154 recA bacterial DNA recombination protein BF89_4290 PF12072 Domain of unknown function (DUF3552) BF89_4290 PF00013 KH domain BF89_4290 PF01966 HD domain BF89_4291 PF13277 YmdB-like protein BF89_4292 PF04232 Stage V sporulation protein S (SpoVS) BF89_4293 PF01244 Membrane dipeptidase (Peptidase family M19) BF89_4294 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF89_4294 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF89_4294 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BF89_4295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF89_4296 PF00919 Uncharacterized protein family UPF0004 BF89_4296 PF04055 Radical SAM superfamily BF89_4296 PF01938 TRAM domain BF89_4297 PF06133 Control of competence regulator ComK, YlbF/YmcA BF89_4298 PF10628 Outer spore coat protein E (CotE) BF89_4299 PF00488 MutS domain V BF89_4299 PF05190 MutS family domain IV BF89_4299 PF05192 MutS domain III BF89_4299 PF05188 MutS domain II BF89_4299 PF01624 MutS domain I BF89_43 PF00294 pfkB family carbohydrate kinase BF89_4300 PF08676 MutL C terminal dimerisation domain BF89_4300 PF01119 DNA mismatch repair protein, C-terminal domain BF89_4301 PF00005 ABC transporter BF89_4304 PF00486 Transcriptional regulatory protein, C terminal BF89_4304 PF00072 Response regulator receiver domain BF89_4305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_4305 PF00512 His Kinase A (phospho-acceptor) domain BF89_4306 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BF89_4308 PF00350 Dynamin family BF89_4309 PF00884 Sulfatase BF89_431 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF89_4310 PF03275 UDP-galactopyranose mutase BF89_4311 PF07486 Cell Wall Hydrolase BF89_4312 PF00082 Subtilase family BF89_4313 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BF89_4315 PF02585 GlcNAc-PI de-N-acetylase BF89_4316 PF00364 Biotin-requiring enzyme BF89_4316 PF00561 alpha/beta hydrolase fold BF89_4317 PF00392 Bacterial regulatory proteins, gntR family BF89_4317 PF00155 Aminotransferase class I and II BF89_4318 PF03788 LrgA family BF89_4319 PF04172 LrgB-like family BF89_4320 PF10787 Uncharacterised protein from bacillus cereus group BF89_4322 PF00563 EAL domain BF89_4322 PF00990 Diguanylate cyclase, GGDEF domain BF89_4322 PF03707 Bacterial signalling protein N terminal repeat BF89_4323 PF00990 Diguanylate cyclase, GGDEF domain BF89_4323 PF03707 Bacterial signalling protein N terminal repeat BF89_4323 PF00563 EAL domain BF89_4324 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4325 PF00561 alpha/beta hydrolase fold BF89_4329 PF01546 Peptidase family M20/M25/M40 BF89_4329 PF07687 Peptidase dimerisation domain BF89_4330 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BF89_4330 PF00730 HhH-GPD superfamily base excision DNA repair protein BF89_4331 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF89_4331 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF89_4332 PF12833 Helix-turn-helix domain BF89_4332 PF02805 Metal binding domain of Ada BF89_4333 PF03372 Endonuclease/Exonuclease/phosphatase family BF89_4334 PF03372 Endonuclease/Exonuclease/phosphatase family BF89_4336 PF01497 Periplasmic binding protein BF89_4337 PF01032 FecCD transport family BF89_4338 PF01032 FecCD transport family BF89_4339 PF00005 ABC transporter BF89_4340 PF00756 Putative esterase BF89_4342 PF02583 Metal-sensitive transcriptional repressor BF89_4343 PF00403 Heavy-metal-associated domain BF89_4344 PF00403 Heavy-metal-associated domain BF89_4345 PF00216 Bacterial DNA-binding protein BF89_4346 PF01226 Formate/nitrite transporter BF89_4347 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF89_4347 PF00149 Calcineurin-like phosphoesterase BF89_4349 PF00704 Glycosyl hydrolases family 18 BF89_4349 PF00041 Fibronectin type III domain BF89_4350 PF00324 Amino acid permease BF89_4353 PF04238 Protein of unknown function (DUF420) BF89_4354 PF00465 Iron-containing alcohol dehydrogenase BF89_4355 PF00465 Iron-containing alcohol dehydrogenase BF89_4356 PF08220 DeoR-like helix-turn-helix domain BF89_4356 PF00455 DeoR C terminal sensor domain BF89_4357 PF00294 pfkB family carbohydrate kinase BF89_4358 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF89_4358 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF89_4359 PF06725 3D domain BF89_4359 PF01476 LysM domain BF89_4362 PF17209 Hfq protein BF89_4365 PF17866 AAA lid domain BF89_4365 PF00004 ATPase family associated with various cellular activities (AAA) BF89_4367 PF03458 UPF0126 domain BF89_4368 PF16360 GTP-binding GTPase Middle Region BF89_4368 PF01926 50S ribosome-binding GTPase BF89_4368 PF13167 GTP-binding GTPase N-terminal BF89_4369 PF06838 Methionine gamma-lyase BF89_4370 PF13411 MerR HTH family regulatory protein BF89_4371 PF03951 Glutamine synthetase, beta-Grasp domain BF89_4371 PF00120 Glutamine synthetase, catalytic domain BF89_4372 PF00589 Phage integrase family BF89_4372 PF02899 Phage integrase, N-terminal SAM-like domain BF89_4376 PF01381 Helix-turn-helix BF89_4391 PF00145 C-5 cytosine-specific DNA methylase BF89_4392 PF02511 Thymidylate synthase complementing protein BF89_44 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF89_44 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF89_440 PF00583 Acetyltransferase (GNAT) family BF89_4400 PF08281 Sigma-70, region 4 BF89_4431 PF05105 Bacteriophage holin family BF89_4432 PF01476 LysM domain BF89_4432 PF01510 N-acetylmuramoyl-L-alanine amidase BF89_4432 PF01471 Putative peptidoglycan binding domain BF89_4440 PF03551 Transcriptional regulator PadR-like family BF89_4443 PF01726 LexA DNA binding domain BF89_4443 PF00717 Peptidase S24-like BF89_4444 PF00239 Resolvase, N terminal domain BF89_4445 PF05979 Bacterial protein of unknown function (DUF896) BF89_4446 PF00149 Calcineurin-like phosphoesterase BF89_4446 PF02872 5'-nucleotidase, C-terminal domain BF89_4449 PF00005 ABC transporter BF89_4450 PF00528 Binding-protein-dependent transport system inner membrane component BF89_4451 PF00528 Binding-protein-dependent transport system inner membrane component BF89_4452 PF07282 Putative transposase DNA-binding domain BF89_4452 PF01385 Probable transposase BF89_4452 PF12323 Helix-turn-helix domain BF89_4453 PF02780 Transketolase, C-terminal domain BF89_4453 PF00456 Transketolase, thiamine diphosphate binding domain BF89_4453 PF02779 Transketolase, pyrimidine binding domain BF89_4454 PF10747 Sporulation inhibitor of replication protein SirA BF89_4455 PF03672 Uncharacterised protein family (UPF0154) BF89_4456 PF00005 ABC transporter BF89_4456 PF00664 ABC transporter transmembrane region BF89_4457 PF00664 ABC transporter transmembrane region BF89_4457 PF00005 ABC transporter BF89_446 PF00155 Aminotransferase class I and II BF89_446 PF00392 Bacterial regulatory proteins, gntR family BF89_4460 PF01510 N-acetylmuramoyl-L-alanine amidase BF89_4460 PF01471 Putative peptidoglycan binding domain BF89_4462 PF01925 Sulfite exporter TauE/SafE BF89_4464 PF00293 NUDIX domain BF89_4464 PF13344 Haloacid dehalogenase-like hydrolase BF89_4466 PF04172 LrgB-like family BF89_4467 PF03788 LrgA family BF89_4468 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_4468 PF03466 LysR substrate binding domain BF89_447 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_447 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_4470 PF02683 Cytochrome C biogenesis protein transmembrane region BF89_4471 PF07301 Protein of unknown function (DUF1453) BF89_4477 PF11084 Protein of unknown function (DUF2621) BF89_448 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF89_4481 PF01209 ubiE/COQ5 methyltransferase family BF89_4482 PF09021 HutP BF89_4483 PF00221 Aromatic amino acid lyase BF89_4484 PF01175 Urocanase Rossmann-like domain BF89_4484 PF17392 Urocanase C-terminal domain BF89_4484 PF17391 Urocanase N-terminal domain BF89_4485 PF01979 Amidohydrolase family BF89_4486 PF00491 Arginase family BF89_4487 PF02559 CarD-like/TRCF domain BF89_4488 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF89_4489 PF01645 Conserved region in glutamate synthase BF89_4490 PF00474 Sodium:solute symporter family BF89_4491 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4492 PF01738 Dienelactone hydrolase family BF89_4493 PF00989 PAS fold BF89_4493 PF13426 PAS domain BF89_4493 PF13188 PAS domain BF89_4493 PF00512 His Kinase A (phospho-acceptor) domain BF89_4493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_4495 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_4495 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_45 PF07690 Major Facilitator Superfamily BF89_4501 PF05532 CsbD-like BF89_4504 PF13193 AMP-binding enzyme C-terminal domain BF89_4504 PF00501 AMP-binding enzyme BF89_4505 PF02632 BioY family BF89_4506 PF13193 AMP-binding enzyme C-terminal domain BF89_4506 PF00501 AMP-binding enzyme BF89_4507 PF00108 Thiolase, N-terminal domain BF89_4507 PF02803 Thiolase, C-terminal domain BF89_4509 PF00293 NUDIX domain BF89_4509 PF13344 Haloacid dehalogenase-like hydrolase BF89_4510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF89_4510 PF01411 tRNA synthetases class II (A) BF89_4510 PF02272 DHHA1 domain BF89_4512 PF07690 Major Facilitator Superfamily BF89_4515 PF01522 Polysaccharide deacetylase BF89_4517 PF00694 Aconitase C-terminal domain BF89_4517 PF00330 Aconitase family (aconitate hydratase) BF89_4518 PF00664 ABC transporter transmembrane region BF89_4518 PF00005 ABC transporter BF89_4518 PF03412 Peptidase C39 family BF89_452 PF00842 Alanine racemase, C-terminal domain BF89_452 PF01168 Alanine racemase, N-terminal domain BF89_4520 PF00578 AhpC/TSA family BF89_4521 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF89_4521 PF14579 Helix-hairpin-helix motif BF89_4521 PF02811 PHP domain BF89_4521 PF11490 DNA polymerase III polC-type N-terminus II BF89_4521 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF89_4521 PF00929 Exonuclease BF89_4521 PF01336 OB-fold nucleic acid binding domain BF89_4522 PF13040 Fur-regulated basic protein B BF89_4523 PF08177 Small acid-soluble spore protein N family BF89_4525 PF00704 Glycosyl hydrolases family 18 BF89_4525 PF01476 LysM domain BF89_4526 PF03061 Thioesterase superfamily BF89_4527 PF01521 Iron-sulphur cluster biosynthesis BF89_4528 PF02660 Glycerol-3-phosphate acyltransferase BF89_4529 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF89_4529 PF03477 ATP cone domain BF89_4530 PF04055 Radical SAM superfamily BF89_4531 PF00072 Response regulator receiver domain BF89_4531 PF00486 Transcriptional regulatory protein, C terminal BF89_4532 PF13180 PDZ domain BF89_4533 PF13380 CoA binding domain BF89_4534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_4534 PF00204 DNA gyrase B BF89_4534 PF00986 DNA gyrase B subunit, carboxyl terminus BF89_4534 PF01751 Toprim domain BF89_4535 PF03989 DNA gyrase C-terminal domain, beta-propeller BF89_4535 PF00521 DNA gyrase/topoisomerase IV, subunit A BF89_4536 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF89_4536 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF89_4538 PF13732 Domain of unknown function (DUF4162) BF89_4538 PF00005 ABC transporter BF89_4542 PF04542 Sigma-70 region 2 BF89_4542 PF08281 Sigma-70, region 4 BF89_4544 PF03816 Cell envelope-related transcriptional attenuator domain BF89_4545 PF00375 Sodium:dicarboxylate symporter family BF89_4546 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_4547 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_4548 PF08241 Methyltransferase domain BF89_455 PF00300 Histidine phosphatase superfamily (branch 1) BF89_4556 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_4558 PF00037 4Fe-4S binding domain BF89_4558 PF00384 Molybdopterin oxidoreductase BF89_4558 PF01568 Molydopterin dinucleotide binding domain BF89_4558 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF89_4558 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF89_4559 PF01568 Molydopterin dinucleotide binding domain BF89_4559 PF00384 Molybdopterin oxidoreductase BF89_4559 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF89_4559 PF00037 4Fe-4S binding domain BF89_4559 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF89_456 PF01145 SPFH domain / Band 7 family BF89_4560 PF07849 Protein of unknown function (DUF1641) BF89_4561 PF10057 Uncharacterized conserved protein (DUF2294) BF89_4562 PF02634 FdhD/NarQ family BF89_4563 PF06463 Molybdenum Cofactor Synthesis C BF89_4563 PF04055 Radical SAM superfamily BF89_4564 PF01226 Formate/nitrite transporter BF89_4565 PF00899 ThiF family BF89_4566 PF00994 Probable molybdopterin binding domain BF89_4566 PF03453 MoeA N-terminal region (domain I and II) BF89_4566 PF03454 MoeA C-terminal region (domain IV) BF89_4567 PF02391 MoaE protein BF89_4569 PF10609 NUBPL iron-transfer P-loop NTPase BF89_4572 PF06961 Protein of unknown function (DUF1294) BF89_4573 PF00892 EamA-like transporter family BF89_4574 PF02681 Divergent PAP2 family BF89_4575 PF13249 Squalene-hopene cyclase N-terminal domain BF89_4575 PF13243 Squalene-hopene cyclase C-terminal domain BF89_4576 PF14151 YfhD-like protein BF89_4578 PF00171 Aldehyde dehydrogenase family BF89_458 PF07690 Major Facilitator Superfamily BF89_4580 PF00474 Sodium:solute symporter family BF89_4581 PF01156 Inosine-uridine preferring nucleoside hydrolase BF89_4584 PF14698 Argininosuccinate lyase C-terminal BF89_4584 PF00206 Lyase BF89_4586 PF00106 short chain dehydrogenase BF89_4588 PF00132 Bacterial transferase hexapeptide (six repeats) BF89_459 PF01425 Amidase BF89_4590 PF00293 NUDIX domain BF89_4592 PF00258 Flavodoxin BF89_4594 PF00313 'Cold-shock' DNA-binding domain BF89_4598 PF13039 Protein of unknown function (DUF3900) BF89_4598 PF13037 Domain of unknown function (DUF3898) BF89_46 PF00356 Bacterial regulatory proteins, lacI family BF89_4600 PF04294 VanW like protein BF89_4601 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4603 PF02308 MgtC family BF89_4604 PF01752 Collagenase BF89_4604 PF18496 Collagenase G catalytic helper subdomain BF89_4604 PF08453 Peptidase family M9 N-terminal BF89_4605 PF00378 Enoyl-CoA hydratase/isomerase BF89_4606 PF00535 Glycosyl transferase family 2 BF89_4607 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF89_4608 PF00132 Bacterial transferase hexapeptide (six repeats) BF89_461 PF02557 D-alanyl-D-alanine carboxypeptidase BF89_4612 PF02913 FAD linked oxidases, C-terminal domain BF89_4612 PF01565 FAD binding domain BF89_4613 PF01758 Sodium Bile acid symporter family BF89_4615 PF04229 GrpB protein BF89_4617 PF04299 Putative FMN-binding domain BF89_4620 PF18801 response regulator aspartate phosphatase H, N terminal BF89_4621 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BF89_4622 PF00107 Zinc-binding dehydrogenase BF89_4622 PF08240 Alcohol dehydrogenase GroES-like domain BF89_4623 PF01022 Bacterial regulatory protein, arsR family BF89_4624 PF01494 FAD binding domain BF89_4627 PF03009 Glycerophosphoryl diester phosphodiesterase family BF89_463 PF07454 Stage II sporulation protein P (SpoIIP) BF89_4630 PF03466 LysR substrate binding domain BF89_4630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_4631 PF07690 Major Facilitator Superfamily BF89_4633 PF00144 Beta-lactamase BF89_4634 PF01432 Peptidase family M3 BF89_4634 PF08439 Oligopeptidase F BF89_4635 PF00797 N-acetyltransferase BF89_4636 PF09154 Domain of unknown function (DUF1939) BF89_4636 PF00128 Alpha amylase, catalytic domain BF89_4637 PF00128 Alpha amylase, catalytic domain BF89_4637 PF09154 Domain of unknown function (DUF1939) BF89_4639 PF00488 MutS domain V BF89_4639 PF01713 Smr domain BF89_4642 PF08240 Alcohol dehydrogenase GroES-like domain BF89_4642 PF00107 Zinc-binding dehydrogenase BF89_4643 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_4643 PF03466 LysR substrate binding domain BF89_4645 PF10901 Protein of unknown function (DUF2690) BF89_4648 PF13170 Protein of unknown function (DUF4003) BF89_4649 PF02567 Phenazine biosynthesis-like protein BF89_4650 PF05675 Protein of unknown function (DUF817) BF89_4651 PF01032 FecCD transport family BF89_4652 PF01032 FecCD transport family BF89_4654 PF01497 Periplasmic binding protein BF89_4658 PF03600 Citrate transporter BF89_4659 PF08830 Protein of unknown function (DUF1806) BF89_4660 PF02585 GlcNAc-PI de-N-acetylase BF89_4665 PF07690 Major Facilitator Superfamily BF89_4666 PF00324 Amino acid permease BF89_4667 PF08240 Alcohol dehydrogenase GroES-like domain BF89_4667 PF00107 Zinc-binding dehydrogenase BF89_4668 PF00753 Metallo-beta-lactamase superfamily BF89_467 PF01588 Putative tRNA binding domain BF89_4676 PF00144 Beta-lactamase BF89_468 PF05525 Branched-chain amino acid transport protein BF89_4681 PF01471 Putative peptidoglycan binding domain BF89_4681 PF01183 Glycosyl hydrolases family 25 BF89_4682 PF00753 Metallo-beta-lactamase superfamily BF89_4686 PF03063 Prismane/CO dehydrogenase family BF89_4689 PF13732 Domain of unknown function (DUF4162) BF89_4689 PF00005 ABC transporter BF89_4690 PF01061 ABC-2 type transporter BF89_4691 PF05656 Protein of unknown function (DUF805) BF89_4695 PF00440 Bacterial regulatory proteins, tetR family BF89_4697 PF00535 Glycosyl transferase family 2 BF89_4697 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BF89_4698 PF04542 Sigma-70 region 2 BF89_4699 PF12791 Anti-sigma factor N-terminus BF89_47 PF01569 PAP2 superfamily BF89_4701 PF01522 Polysaccharide deacetylase BF89_4701 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF89_4702 PF01022 Bacterial regulatory protein, arsR family BF89_4705 PF01638 HxlR-like helix-turn-helix BF89_4706 PF02525 Flavodoxin-like fold BF89_4708 PF13193 AMP-binding enzyme C-terminal domain BF89_4708 PF00501 AMP-binding enzyme BF89_471 PF03471 Transporter associated domain BF89_471 PF00571 CBS domain BF89_471 PF01595 Cyclin M transmembrane N-terminal domain BF89_4712 PF02567 Phenazine biosynthesis-like protein BF89_4718 PF00248 Aldo/keto reductase family BF89_4719 PF01638 HxlR-like helix-turn-helix BF89_472 PF04306 Protein of unknown function (DUF456) BF89_4720 PF01638 HxlR-like helix-turn-helix BF89_4722 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF89_4722 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF89_4723 PF00392 Bacterial regulatory proteins, gntR family BF89_4723 PF07702 UTRA domain BF89_4724 PF01638 HxlR-like helix-turn-helix BF89_4725 PF03960 ArsC family BF89_473 PF13460 NAD(P)H-binding BF89_4731 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4732 PF03928 Haem-degrading BF89_4734 PF07690 Major Facilitator Superfamily BF89_4735 PF00248 Aldo/keto reductase family BF89_4739 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF89_4739 PF01447 Thermolysin metallopeptidase, catalytic domain BF89_4739 PF03413 Peptidase propeptide and YPEB domain BF89_4739 PF07504 Fungalysin/Thermolysin Propeptide Motif BF89_4740 PF00106 short chain dehydrogenase BF89_4741 PF00698 Acyl transferase domain BF89_4741 PF08240 Alcohol dehydrogenase GroES-like domain BF89_4741 PF00107 Zinc-binding dehydrogenase BF89_4741 PF16197 Ketoacyl-synthetase C-terminal extension BF89_4741 PF14765 Polyketide synthase dehydratase BF89_4741 PF00550 Phosphopantetheine attachment site BF89_4741 PF00109 Beta-ketoacyl synthase, N-terminal domain BF89_4741 PF08659 KR domain BF89_4741 PF02801 Beta-ketoacyl synthase, C-terminal domain BF89_4743 PF00296 Luciferase-like monooxygenase BF89_4744 PF00107 Zinc-binding dehydrogenase BF89_4744 PF08240 Alcohol dehydrogenase GroES-like domain BF89_4745 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF89_4745 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF89_4746 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF89_4746 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF89_4747 PF00456 Transketolase, thiamine diphosphate binding domain BF89_4747 PF02780 Transketolase, C-terminal domain BF89_4747 PF02779 Transketolase, pyrimidine binding domain BF89_4748 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF89_4748 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF89_4749 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF89_4750 PF02447 GntP family permease BF89_4751 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF89_4751 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF89_4752 PF10282 Lactonase, 7-bladed beta-propeller BF89_4753 PF06906 Protein of unknown function (DUF1272) BF89_4754 PF00805 Pentapeptide repeats (8 copies) BF89_4755 PF00892 EamA-like transporter family BF89_4756 PF13411 MerR HTH family regulatory protein BF89_4757 PF01595 Cyclin M transmembrane N-terminal domain BF89_4757 PF03471 Transporter associated domain BF89_4757 PF00571 CBS domain BF89_4759 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_476 PF13396 Phospholipase_D-nuclease N-terminal BF89_476 PF13091 PLD-like domain BF89_4764 PF07690 Major Facilitator Superfamily BF89_4766 PF08241 Methyltransferase domain BF89_477 PF03061 Thioesterase superfamily BF89_4770 PF01594 AI-2E family transporter BF89_4771 PF13288 DXP reductoisomerase C-terminal domain BF89_4771 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF89_4771 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF89_4772 PF00579 tRNA synthetases class I (W and Y) BF89_4774 PF00005 ABC transporter BF89_4776 PF14602 Hexapeptide repeat of succinyl-transferase BF89_4776 PF12464 Maltose acetyltransferase BF89_4777 PF07690 Major Facilitator Superfamily BF89_4778 PF00480 ROK family BF89_4779 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_478 PF09323 Domain of unknown function (DUF1980) BF89_4781 PF00293 NUDIX domain BF89_4781 PF13344 Haloacid dehalogenase-like hydrolase BF89_4786 PF13419 Haloacid dehalogenase-like hydrolase BF89_479 PF03773 Predicted permease BF89_4791 PF00005 ABC transporter BF89_4795 PF00391 PEP-utilising enzyme, mobile domain BF89_4795 PF00224 Pyruvate kinase, barrel domain BF89_4795 PF02887 Pyruvate kinase, alpha/beta domain BF89_4797 PF00881 Nitroreductase family BF89_4798 PF01638 HxlR-like helix-turn-helix BF89_4801 PF13393 Histidyl-tRNA synthetase BF89_4801 PF03129 Anticodon binding domain BF89_4802 PF04073 Aminoacyl-tRNA editing domain BF89_4803 PF02660 Glycerol-3-phosphate acyltransferase BF89_4804 PF01381 Helix-turn-helix BF89_4807 PF04231 Endonuclease I BF89_4808 PF03606 C4-dicarboxylate anaerobic carrier BF89_4809 PF03737 Aldolase/RraA BF89_481 PF14667 Polysaccharide biosynthesis C-terminal domain BF89_481 PF01943 Polysaccharide biosynthesis protein BF89_4812 PF02361 Cobalt transport protein BF89_4813 PF00005 ABC transporter BF89_4815 PF14256 YwiC-like protein BF89_4816 PF14256 YwiC-like protein BF89_482 PF09335 SNARE associated Golgi protein BF89_4820 PF02525 Flavodoxin-like fold BF89_4822 PF02667 Short chain fatty acid transporter BF89_4823 PF01289 Thiol-activated cytolysin BF89_4823 PF17440 Thiol-activated cytolysin beta sandwich domain BF89_4824 PF00440 Bacterial regulatory proteins, tetR family BF89_4825 PF00893 Small Multidrug Resistance protein BF89_4826 PF17314 Family of unknown function (DUF5360) BF89_4828 PF13396 Phospholipase_D-nuclease N-terminal BF89_4829 PF00005 ABC transporter BF89_4829 PF13732 Domain of unknown function (DUF4162) BF89_483 PF00293 NUDIX domain BF89_4830 PF12679 ABC-2 family transporter protein BF89_4833 PF07690 Major Facilitator Superfamily BF89_4834 PF01047 MarR family BF89_4835 PF12697 Alpha/beta hydrolase family BF89_4836 PF07690 Major Facilitator Superfamily BF89_4837 PF14044 NETI protein BF89_484 PF08757 CotH kinase protein BF89_4844 PF00395 S-layer homology domain BF89_4846 PF01804 Penicillin amidase BF89_4847 PF01497 Periplasmic binding protein BF89_4847 PF12833 Helix-turn-helix domain BF89_4848 PF07883 Cupin domain BF89_4851 PF08281 Sigma-70, region 4 BF89_4851 PF04542 Sigma-70 region 2 BF89_4854 PF00266 Aminotransferase class-V BF89_4855 PF01842 ACT domain BF89_4855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF89_4855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF89_4858 PF13520 Amino acid permease BF89_4859 PF01037 Lrp/AsnC ligand binding domain BF89_486 PF00300 Histidine phosphatase superfamily (branch 1) BF89_4862 PF00586 AIR synthase related protein, N-terminal domain BF89_4862 PF02769 AIR synthase related protein, C-terminal domain BF89_4863 PF17788 HypF Kae1-like domain BF89_4863 PF01300 Telomere recombination BF89_4863 PF00708 Acylphosphatase BF89_4863 PF07503 HypF finger BF89_4864 PF00202 Aminotransferase class-III BF89_4865 PF03315 Serine dehydratase beta chain BF89_4865 PF01842 ACT domain BF89_4866 PF03313 Serine dehydratase alpha chain BF89_4868 PF01022 Bacterial regulatory protein, arsR family BF89_4870 PF16859 Tetracyclin repressor-like, C-terminal domain BF89_4870 PF00440 Bacterial regulatory proteins, tetR family BF89_4871 PF07690 Major Facilitator Superfamily BF89_4872 PF02661 Fic/DOC family BF89_4873 PF01609 Transposase DDE domain BF89_4874 PF01752 Collagenase BF89_4874 PF18496 Collagenase G catalytic helper subdomain BF89_4874 PF08453 Peptidase family M9 N-terminal BF89_4875 PF01554 MatE BF89_4879 PF00672 HAMP domain BF89_4879 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_4879 PF02743 Cache domain BF89_488 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4882 PF11798 IMS family HHH motif BF89_4882 PF11799 impB/mucB/samB family C-terminal domain BF89_4882 PF00817 impB/mucB/samB family BF89_4886 PF18801 response regulator aspartate phosphatase H, N terminal BF89_4887 PF00356 Bacterial regulatory proteins, lacI family BF89_4888 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF89_4889 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF89_489 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_4890 PF05116 Sucrose-6F-phosphate phosphohydrolase BF89_4891 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF89_4891 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF89_4892 PF07690 Major Facilitator Superfamily BF89_4896 PF02016 LD-carboxypeptidase N-terminal domain BF89_4896 PF17676 LD-carboxypeptidase C-terminal domain BF89_4898 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_4898 PF03466 LysR substrate binding domain BF89_4899 PF02754 Cysteine-rich domain BF89_4900 PF11870 Domain of unknown function (DUF3390) BF89_4900 PF13183 4Fe-4S dicluster domain BF89_4900 PF02589 LUD domain BF89_4901 PF02589 LUD domain BF89_4902 PF07690 Major Facilitator Superfamily BF89_4903 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_4903 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_4904 PF04299 Putative FMN-binding domain BF89_4905 PF00583 Acetyltransferase (GNAT) family BF89_4906 PF01047 MarR family BF89_4908 PF00486 Transcriptional regulatory protein, C terminal BF89_4908 PF00072 Response regulator receiver domain BF89_4909 PF00512 His Kinase A (phospho-acceptor) domain BF89_4909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_4909 PF00672 HAMP domain BF89_491 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF89_491 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF89_4912 PF02687 FtsX-like permease family BF89_4913 PF00005 ABC transporter BF89_4916 PF04072 Leucine carboxyl methyltransferase BF89_4917 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF89_4917 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF89_4919 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BF89_492 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF89_4920 PF00753 Metallo-beta-lactamase superfamily BF89_4923 PF01381 Helix-turn-helix BF89_4925 PF00144 Beta-lactamase BF89_4929 PF00291 Pyridoxal-phosphate dependent enzyme BF89_493 PF13460 NAD(P)H-binding BF89_4934 PF00672 HAMP domain BF89_4934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_4934 PF00512 His Kinase A (phospho-acceptor) domain BF89_4935 PF00072 Response regulator receiver domain BF89_4935 PF00486 Transcriptional regulatory protein, C terminal BF89_4940 PF07690 Major Facilitator Superfamily BF89_4941 PF00175 Oxidoreductase NAD-binding domain BF89_4941 PF00067 Cytochrome P450 BF89_4941 PF00667 FAD binding domain BF89_4941 PF00258 Flavodoxin BF89_4942 PF12802 MarR family BF89_4945 PF00144 Beta-lactamase BF89_4947 PF12833 Helix-turn-helix domain BF89_4947 PF02805 Metal binding domain of Ada BF89_4949 PF01609 Transposase DDE domain BF89_495 PF01297 Zinc-uptake complex component A periplasmic BF89_495 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF89_4951 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4954 PF01037 Lrp/AsnC ligand binding domain BF89_4957 PF00012 Hsp70 protein BF89_4961 PF01022 Bacterial regulatory protein, arsR family BF89_4962 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF89_4963 PF01758 Sodium Bile acid symporter family BF89_4964 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF89_4969 PF00005 ABC transporter BF89_4970 PF00950 ABC 3 transport family BF89_4971 PF01297 Zinc-uptake complex component A periplasmic BF89_4972 PF00561 alpha/beta hydrolase fold BF89_4973 PF01040 UbiA prenyltransferase family BF89_4975 PF10057 Uncharacterized conserved protein (DUF2294) BF89_4976 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF89_4976 PF00361 Proton-conducting membrane transporter BF89_4977 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BF89_4979 PF00875 DNA photolyase BF89_4979 PF03441 FAD binding domain of DNA photolyase BF89_4980 PF03073 TspO/MBR family BF89_4983 PF11181 Heat induced stress protein YflT BF89_4986 PF01544 CorA-like Mg2+ transporter protein BF89_4987 PF01047 MarR family BF89_4988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_4988 PF03466 LysR substrate binding domain BF89_4993 PF00857 Isochorismatase family BF89_4994 PF00561 alpha/beta hydrolase fold BF89_4995 PF06628 Catalase-related immune-responsive BF89_4995 PF00199 Catalase BF89_4996 PF00149 Calcineurin-like phosphoesterase BF89_4996 PF17936 Bacterial Ig domain BF89_4996 PF02872 5'-nucleotidase, C-terminal domain BF89_5 PF00289 Biotin carboxylase, N-terminal domain BF89_5 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF89_5 PF02785 Biotin carboxylase C-terminal domain BF89_50 PF03717 Penicillin-binding Protein dimerisation domain BF89_50 PF00905 Penicillin binding protein transpeptidase domain BF89_5002 PF01235 Sodium:alanine symporter family BF89_5004 PF04960 Glutaminase BF89_5005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_5006 PF00072 Response regulator receiver domain BF89_5006 PF08664 YcbB domain BF89_5007 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_5008 PF03845 Spore germination protein BF89_5009 PF05504 Spore germination B3/ GerAC like, C-terminal BF89_5011 PF03949 Malic enzyme, NAD binding domain BF89_5011 PF00390 Malic enzyme, N-terminal domain BF89_5012 PF13564 DoxX-like family BF89_5013 PF03807 NADP oxidoreductase coenzyme F420-dependent BF89_5013 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF89_5014 PF05525 Branched-chain amino acid transport protein BF89_5015 PF13520 Amino acid permease BF89_5016 PF02151 UvrB/uvrC motif BF89_5016 PF01541 GIY-YIG catalytic domain BF89_5016 PF08459 UvrC Helix-hairpin-helix N-terminal BF89_5016 PF12826 Helix-hairpin-helix motif BF89_5018 PF01381 Helix-turn-helix BF89_5019 PF17763 Glutaminase/Asparaginase C-terminal domain BF89_5019 PF00710 Asparaginase, N-terminal BF89_5020 PF10415 Fumarase C C-terminus BF89_5020 PF00206 Lyase BF89_5023 PF08240 Alcohol dehydrogenase GroES-like domain BF89_5023 PF00107 Zinc-binding dehydrogenase BF89_5023 PF13823 Alcohol dehydrogenase GroES-associated BF89_5024 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF89_5025 PF11553 Protein of unknown function (DUF3231) BF89_5026 PF10710 Protein of unknown function (DUF2512) BF89_5027 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF89_5029 PF00324 Amino acid permease BF89_5030 PF00324 Amino acid permease BF89_5031 PF01810 LysE type translocator BF89_5032 PF08892 YqcI/YcgG family BF89_5034 PF07875 Coat F domain BF89_5037 PF00753 Metallo-beta-lactamase superfamily BF89_5038 PF00391 PEP-utilising enzyme, mobile domain BF89_5038 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF89_5039 PF00440 Bacterial regulatory proteins, tetR family BF89_5041 PF02915 Rubrerythrin BF89_5048 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BF89_5048 PF02770 Acyl-CoA dehydrogenase, middle domain BF89_5048 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF89_5051 PF07454 Stage II sporulation protein P (SpoIIP) BF89_5052 PF03932 CutC family BF89_5053 PF10502 Signal peptidase, peptidase S26 BF89_5054 PF09339 IclR helix-turn-helix domain BF89_5054 PF01614 Bacterial transcriptional regulator BF89_5055 PF02682 Carboxyltransferase domain, subdomain C and D BF89_5056 PF02626 Carboxyltransferase domain, subdomain A and B BF89_5057 PF03746 LamB/YcsF family BF89_506 PF00583 Acetyltransferase (GNAT) family BF89_5061 PF01470 Pyroglutamyl peptidase BF89_5062 PF01470 Pyroglutamyl peptidase BF89_5063 PF02146 Sir2 family BF89_5066 PF10502 Signal peptidase, peptidase S26 BF89_5068 PF00293 NUDIX domain BF89_507 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF89_507 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF89_5072 PF10898 Protein of unknown function (DUF2716) BF89_5073 PF08713 DNA alkylation repair enzyme BF89_5075 PF00324 Amino acid permease BF89_5076 PF13302 Acetyltransferase (GNAT) domain BF89_5077 PF01925 Sulfite exporter TauE/SafE BF89_508 PF00248 Aldo/keto reductase family BF89_5083 PF00561 alpha/beta hydrolase fold BF89_5084 PF00486 Transcriptional regulatory protein, C terminal BF89_5084 PF00072 Response regulator receiver domain BF89_5085 PF00512 His Kinase A (phospho-acceptor) domain BF89_5085 PF00672 HAMP domain BF89_5087 PF13031 Protein of unknown function (DUF3892) BF89_5088 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BF89_5089 PF00155 Aminotransferase class I and II BF89_5089 PF00392 Bacterial regulatory proteins, gntR family BF89_5090 PF00892 EamA-like transporter family BF89_5093 PF00583 Acetyltransferase (GNAT) family BF89_5094 PF12833 Helix-turn-helix domain BF89_5099 PF00005 ABC transporter BF89_5099 PF02687 FtsX-like permease family BF89_5099 PF12704 MacB-like periplasmic core domain BF89_510 PF01593 Flavin containing amine oxidoreductase BF89_5101 PF00392 Bacterial regulatory proteins, gntR family BF89_5102 PF00005 ABC transporter BF89_5105 PF00293 NUDIX domain BF89_5107 PF00679 Elongation factor G C-terminus BF89_5107 PF00009 Elongation factor Tu GTP binding domain BF89_5107 PF14492 Elongation Factor G, domain II BF89_5107 PF03764 Elongation factor G, domain IV BF89_5108 PF01047 MarR family BF89_5109 PF00881 Nitroreductase family BF89_5111 PF17863 AAA lid domain BF89_5111 PF07726 ATPase family associated with various cellular activities (AAA) BF89_5116 PF00144 Beta-lactamase BF89_5117 PF13382 Adenine deaminase C-terminal domain BF89_5117 PF01979 Amidohydrolase family BF89_5119 PF06628 Catalase-related immune-responsive BF89_5119 PF00199 Catalase BF89_512 PF00296 Luciferase-like monooxygenase BF89_5120 PF00202 Aminotransferase class-III BF89_5122 PF00535 Glycosyl transferase family 2 BF89_5124 PF00535 Glycosyl transferase family 2 BF89_5127 PF00535 Glycosyl transferase family 2 BF89_5130 PF07690 Major Facilitator Superfamily BF89_5133 PF17863 AAA lid domain BF89_5133 PF07726 ATPase family associated with various cellular activities (AAA) BF89_5137 PF12681 Glyoxalase-like domain BF89_5138 PF13302 Acetyltransferase (GNAT) domain BF89_5140 PF04397 LytTr DNA-binding domain BF89_5140 PF00072 Response regulator receiver domain BF89_5142 PF10086 YhfC intramembrane metalloprotease BF89_5145 PF13443 Cro/C1-type HTH DNA-binding domain BF89_5146 PF11188 Protein of unknown function (DUF2975) BF89_5147 PF00245 Alkaline phosphatase BF89_5148 PF00487 Fatty acid desaturase BF89_5149 PF01139 tRNA-splicing ligase RtcB BF89_515 PF00210 Ferritin-like domain BF89_5150 PF00324 Amino acid permease BF89_5151 PF09339 IclR helix-turn-helix domain BF89_5151 PF01614 Bacterial transcriptional regulator BF89_5152 PF01546 Peptidase family M20/M25/M40 BF89_5153 PF03807 NADP oxidoreductase coenzyme F420-dependent BF89_5153 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF89_5154 PF01472 PUA domain BF89_5154 PF00696 Amino acid kinase family BF89_5155 PF00171 Aldehyde dehydrogenase family BF89_5156 PF01773 Na+ dependent nucleoside transporter N-terminus BF89_5156 PF07662 Na+ dependent nucleoside transporter C-terminus BF89_5160 PF03992 Antibiotic biosynthesis monooxygenase BF89_5164 PF01791 DeoC/LacD family aldolase BF89_5166 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF89_5166 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF89_5167 PF00325 Bacterial regulatory proteins, crp family BF89_5167 PF04198 Putative sugar-binding domain BF89_5168 PF00005 ABC transporter BF89_5169 PF02653 Branched-chain amino acid transport system / permease component BF89_5170 PF02653 Branched-chain amino acid transport system / permease component BF89_5171 PF13407 Periplasmic binding protein domain BF89_5172 PF06039 Malate:quinone oxidoreductase (Mqo) BF89_5177 PF04542 Sigma-70 region 2 BF89_5177 PF08281 Sigma-70, region 4 BF89_5179 PF06725 3D domain BF89_5179 PF01476 LysM domain BF89_5182 PF01636 Phosphotransferase enzyme family BF89_5187 PF01817 Chorismate mutase type II BF89_5187 PF00793 DAHP synthetase I family BF89_5188 PF01264 Chorismate synthase BF89_5189 PF00155 Aminotransferase class I and II BF89_519 PF02743 Cache domain BF89_519 PF00672 HAMP domain BF89_519 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF89_5190 PF01842 ACT domain BF89_5190 PF02153 Prephenate dehydrogenase BF89_5191 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF89_5193 PF16295 Tetracyclin repressor-like, C-terminal domain BF89_5193 PF00440 Bacterial regulatory proteins, tetR family BF89_5194 PF03176 MMPL family BF89_5195 PF03176 MMPL family BF89_5197 PF00005 ABC transporter BF89_5197 PF12848 ABC transporter BF89_5198 PF00884 Sulfatase BF89_5199 PF03741 Integral membrane protein TerC family BF89_52 PF08281 Sigma-70, region 4 BF89_52 PF04542 Sigma-70 region 2 BF89_520 PF03193 RsgA GTPase BF89_5201 PF01522 Polysaccharide deacetylase BF89_5207 PF12867 DinB superfamily BF89_5208 PF13536 Putative multidrug resistance efflux transporter BF89_5213 PF02522 Aminoglycoside 3-N-acetyltransferase BF89_5222 PF00005 ABC transporter BF89_5223 PF09084 NMT1/THI5 like BF89_5224 PF00528 Binding-protein-dependent transport system inner membrane component BF89_5225 PF00296 Luciferase-like monooxygenase BF89_5227 PF01594 AI-2E family transporter BF89_5236 PF00005 ABC transporter BF89_524 PF07690 Major Facilitator Superfamily BF89_5240 PF03630 Fumble BF89_5241 PF07977 FabA-like domain BF89_5242 PF00155 Aminotransferase class I and II BF89_5249 PF08241 Methyltransferase domain BF89_525 PF00248 Aldo/keto reductase family BF89_5251 PF01156 Inosine-uridine preferring nucleoside hydrolase BF89_5252 PF04226 Transglycosylase associated protein BF89_5256 PF07690 Major Facilitator Superfamily BF89_5257 PF12793 Sugar transport-related sRNA regulator N-term BF89_5257 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_5258 PF13171 Protein of unknown function (DUF4004) BF89_5259 PF04519 Polymer-forming cytoskeletal BF89_526 PF01022 Bacterial regulatory protein, arsR family BF89_5261 PF07690 Major Facilitator Superfamily BF89_5265 PF02645 Uncharacterised protein, DegV family COG1307 BF89_5268 PF01432 Peptidase family M3 BF89_5268 PF08439 Oligopeptidase F BF89_5269 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF89_527 PF00082 Subtilase family BF89_5271 PF01048 Phosphorylase superfamily BF89_5275 PF00072 Response regulator receiver domain BF89_5275 PF00486 Transcriptional regulatory protein, C terminal BF89_5276 PF00989 PAS fold BF89_5276 PF16736 Single Cache-like BF89_5276 PF00512 His Kinase A (phospho-acceptor) domain BF89_5276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_5277 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF89_5277 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF89_528 PF18277 AbrB C-terminal domain BF89_528 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF89_5282 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF89_5285 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF89_5285 PF13378 Enolase C-terminal domain-like BF89_5286 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BF89_5286 PF00877 NlpC/P60 family BF89_5287 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_5288 PF13302 Acetyltransferase (GNAT) domain BF89_5288 PF00117 Glutamine amidotransferase class-I BF89_5288 PF13673 Acetyltransferase (GNAT) domain BF89_5288 PF00958 GMP synthase C terminal domain BF89_5288 PF03352 Methyladenine glycosylase BF89_5289 PF04914 DltD protein BF89_529 PF02687 FtsX-like permease family BF89_5292 PF09335 SNARE associated Golgi protein BF89_5293 PF08876 Domain of unknown function (DUF1836) BF89_5296 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_5296 PF04324 BFD-like [2Fe-2S] binding domain BF89_5298 PF02954 Bacterial regulatory protein, Fis family BF89_5298 PF13188 PAS domain BF89_5298 PF00158 Sigma-54 interaction domain BF89_5299 PF01266 FAD dependent oxidoreductase BF89_530 PF02540 NAD synthase BF89_5300 PF05544 Proline racemase BF89_5301 PF05544 Proline racemase BF89_5302 PF00701 Dihydrodipicolinate synthetase family BF89_5303 PF00171 Aldehyde dehydrogenase family BF89_5304 PF01235 Sodium:alanine symporter family BF89_5305 PF02627 Carboxymuconolactone decarboxylase family BF89_5307 PF18416 N-acetylglucosamine binding protein domain 2 BF89_5307 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF89_5308 PF02833 DHHA2 domain BF89_5308 PF01368 DHH family BF89_531 PF13344 Haloacid dehalogenase-like hydrolase BF89_531 PF00293 NUDIX domain BF89_5316 PF00570 HRDC domain BF89_5316 PF16124 RecQ zinc-binding BF89_5316 PF00271 Helicase conserved C-terminal domain BF89_5316 PF00270 DEAD/DEAH box helicase BF89_5316 PF09382 RQC domain BF89_5317 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BF89_5320 PF13538 UvrD-like helicase C-terminal domain BF89_5330 PF00753 Metallo-beta-lactamase superfamily BF89_5330 PF03772 Competence protein BF89_5330 PF13567 Domain of unknown function (DUF4131) BF89_5336 PF10990 Protein of unknown function (DUF2809) BF89_5340 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF89_5340 PF18416 N-acetylglucosamine binding protein domain 2 BF89_5341 PF13673 Acetyltransferase (GNAT) domain BF89_5342 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF89_5345 PF00574 Clp protease BF89_5346 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF89_5347 PF00005 ABC transporter BF89_5347 PF00571 CBS domain BF89_5348 PF00528 Binding-protein-dependent transport system inner membrane component BF89_5354 PF13673 Acetyltransferase (GNAT) domain BF89_5354 PF04229 GrpB protein BF89_5355 PF00106 short chain dehydrogenase BF89_5357 PF00676 Dehydrogenase E1 component BF89_5358 PF02779 Transketolase, pyrimidine binding domain BF89_5358 PF02780 Transketolase, C-terminal domain BF89_5359 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF89_5359 PF02817 e3 binding domain BF89_5359 PF00364 Biotin-requiring enzyme BF89_536 PF01734 Patatin-like phospholipase BF89_5360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF89_5360 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_5364 PF02082 Transcriptional regulator BF89_5365 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF89_5365 PF00403 Heavy-metal-associated domain BF89_5365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF89_5368 PF00455 DeoR C terminal sensor domain BF89_5368 PF08220 DeoR-like helix-turn-helix domain BF89_5369 PF13302 Acetyltransferase (GNAT) domain BF89_5372 PF00158 Sigma-54 interaction domain BF89_5372 PF01590 GAF domain BF89_5372 PF02954 Bacterial regulatory protein, Fis family BF89_5377 PF13344 Haloacid dehalogenase-like hydrolase BF89_5377 PF00293 NUDIX domain BF89_5378 PF08359 YsiA-like protein, C-terminal region BF89_5378 PF00440 Bacterial regulatory proteins, tetR family BF89_5379 PF00266 Aminotransferase class-V BF89_538 PF01810 LysE type translocator BF89_5380 PF04199 Putative cyclase BF89_5381 PF03301 Tryptophan 2,3-dioxygenase BF89_5384 PF07486 Cell Wall Hydrolase BF89_5384 PF01471 Putative peptidoglycan binding domain BF89_5385 PF03413 Peptidase propeptide and YPEB domain BF89_5385 PF14620 YpeB sporulation BF89_5386 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF89_5389 PF06081 Aromatic acid exporter family member 1 BF89_539 PF07690 Major Facilitator Superfamily BF89_5394 PF00561 alpha/beta hydrolase fold BF89_5395 PF00392 Bacterial regulatory proteins, gntR family BF89_5395 PF00155 Aminotransferase class I and II BF89_5396 PF00892 EamA-like transporter family BF89_5397 PF00308 Bacterial dnaA protein BF89_5397 PF08299 Bacterial dnaA protein helix-turn-helix BF89_5397 PF11638 DnaA N-terminal domain BF89_5398 PF00344 SecY translocase BF89_540 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF89_5402 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF89_5402 PF07504 Fungalysin/Thermolysin Propeptide Motif BF89_5402 PF03413 Peptidase propeptide and YPEB domain BF89_5402 PF01447 Thermolysin metallopeptidase, catalytic domain BF89_5403 PF00128 Alpha amylase, catalytic domain BF89_5403 PF03714 Bacterial pullanase-associated domain BF89_5403 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF89_5405 PF00668 Condensation domain BF89_5405 PF13193 AMP-binding enzyme C-terminal domain BF89_5405 PF00550 Phosphopantetheine attachment site BF89_5405 PF00501 AMP-binding enzyme BF89_5406 PF00550 Phosphopantetheine attachment site BF89_5406 PF00501 AMP-binding enzyme BF89_5406 PF13193 AMP-binding enzyme C-terminal domain BF89_5406 PF00668 Condensation domain BF89_5407 PF00282 Pyridoxal-dependent decarboxylase conserved domain BF89_5408 PF07859 alpha/beta hydrolase fold BF89_541 PF01261 Xylose isomerase-like TIM barrel BF89_5411 PF13419 Haloacid dehalogenase-like hydrolase BF89_5416 PF01266 FAD dependent oxidoreductase BF89_5424 PF01541 GIY-YIG catalytic domain BF89_5426 PF02673 Bacitracin resistance protein BacA BF89_5429 PF12867 DinB superfamily BF89_5431 PF08000 Bacterial PH domain BF89_5432 PF01734 Patatin-like phospholipase BF89_5438 PF09234 Domain of unknown function (DUF1963) BF89_544 PF00501 AMP-binding enzyme BF89_544 PF13193 AMP-binding enzyme C-terminal domain BF89_5442 PF12706 Beta-lactamase superfamily domain BF89_5445 PF00293 NUDIX domain BF89_5446 PF02767 DNA polymerase III beta subunit, central domain BF89_5446 PF00712 DNA polymerase III beta subunit, N-terminal domain BF89_5446 PF02768 DNA polymerase III beta subunit, C-terminal domain BF89_5447 PF00293 NUDIX domain BF89_5447 PF09297 NADH pyrophosphatase zinc ribbon domain BF89_5449 PF07690 Major Facilitator Superfamily BF89_545 PF06276 Ferric iron reductase FhuF-like transporter BF89_545 PF04183 IucA / IucC family BF89_5453 PF13344 Haloacid dehalogenase-like hydrolase BF89_5453 PF00293 NUDIX domain BF89_5455 PF01270 Glycosyl hydrolases family 8 BF89_5456 PF00892 EamA-like transporter family BF89_5457 PF00392 Bacterial regulatory proteins, gntR family BF89_5457 PF00155 Aminotransferase class I and II BF89_5458 PF00392 Bacterial regulatory proteins, gntR family BF89_5458 PF00155 Aminotransferase class I and II BF89_546 PF06276 Ferric iron reductase FhuF-like transporter BF89_546 PF04183 IucA / IucC family BF89_5461 PF03009 Glycerophosphoryl diester phosphodiesterase family BF89_5465 PF07690 Major Facilitator Superfamily BF89_5467 PF00144 Beta-lactamase BF89_547 PF00583 Acetyltransferase (GNAT) family BF89_5470 PF01965 DJ-1/PfpI family BF89_5478 PF00144 Beta-lactamase BF89_5478 PF11954 Domain of unknown function (DUF3471) BF89_548 PF02308 MgtC family BF89_5481 PF00107 Zinc-binding dehydrogenase BF89_5481 PF08240 Alcohol dehydrogenase GroES-like domain BF89_5485 PF00512 His Kinase A (phospho-acceptor) domain BF89_5485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_5488 PF12558 ATP-binding cassette cobalt transporter BF89_5488 PF00005 ABC transporter BF89_5489 PF07155 ECF-type riboflavin transporter, S component BF89_5490 PF01177 Asp/Glu/Hydantoin racemase BF89_5491 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF89_5493 PF00512 His Kinase A (phospho-acceptor) domain BF89_5493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_5493 PF00989 PAS fold BF89_5493 PF13188 PAS domain BF89_5493 PF13426 PAS domain BF89_5497 PF00067 Cytochrome P450 BF89_5498 PF00067 Cytochrome P450 BF89_550 PF01522 Polysaccharide deacetylase BF89_5500 PF07561 Domain of Unknown Function (DUF1540) BF89_5501 PF00132 Bacterial transferase hexapeptide (six repeats) BF89_5503 PF00067 Cytochrome P450 BF89_551 PF00989 PAS fold BF89_551 PF16736 Single Cache-like BF89_551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_551 PF00512 His Kinase A (phospho-acceptor) domain BF89_5518 PF03070 TENA/THI-4/PQQC family BF89_5519 PF07478 D-ala D-ala ligase C-terminus BF89_5519 PF01820 D-ala D-ala ligase N-terminus BF89_552 PF00072 Response regulator receiver domain BF89_552 PF00486 Transcriptional regulatory protein, C terminal BF89_5520 PF00392 Bacterial regulatory proteins, gntR family BF89_5520 PF00155 Aminotransferase class I and II BF89_5521 PF03447 Homoserine dehydrogenase, NAD binding domain BF89_5521 PF01842 ACT domain BF89_5521 PF00742 Homoserine dehydrogenase BF89_5525 PF02687 FtsX-like permease family BF89_5526 PF02687 FtsX-like permease family BF89_5527 PF00005 ABC transporter BF89_5532 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_5534 PF00072 Response regulator receiver domain BF89_5534 PF00486 Transcriptional regulatory protein, C terminal BF89_5536 PF07486 Cell Wall Hydrolase BF89_5539 PF02875 Mur ligase family, glutamate ligase domain BF89_5539 PF01225 Mur ligase family, catalytic domain BF89_5539 PF08245 Mur ligase middle domain BF89_554 PF03816 Cell envelope-related transcriptional attenuator domain BF89_5540 PF08245 Mur ligase middle domain BF89_5540 PF02875 Mur ligase family, glutamate ligase domain BF89_5540 PF01225 Mur ligase family, catalytic domain BF89_5543 PF00107 Zinc-binding dehydrogenase BF89_5543 PF08240 Alcohol dehydrogenase GroES-like domain BF89_5545 PF00392 Bacterial regulatory proteins, gntR family BF89_5545 PF00155 Aminotransferase class I and II BF89_5548 PF12833 Helix-turn-helix domain BF89_5549 PF01636 Phosphotransferase enzyme family BF89_5552 PF07690 Major Facilitator Superfamily BF89_5553 PF09278 MerR, DNA binding BF89_5553 PF00376 MerR family regulatory protein BF89_5554 PF00144 Beta-lactamase BF89_5557 PF17755 UvrA DNA-binding domain BF89_5557 PF17760 UvrA interaction domain BF89_5557 PF17755 UvrA DNA-binding domain BF89_5557 PF17760 UvrA interaction domain BF89_5561 PF01447 Thermolysin metallopeptidase, catalytic domain BF89_5561 PF03413 Peptidase propeptide and YPEB domain BF89_5561 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF89_5561 PF07504 Fungalysin/Thermolysin Propeptide Motif BF89_5562 PF07504 Fungalysin/Thermolysin Propeptide Motif BF89_5562 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF89_5562 PF01447 Thermolysin metallopeptidase, catalytic domain BF89_5562 PF03413 Peptidase propeptide and YPEB domain BF89_5567 PF01048 Phosphorylase superfamily BF89_5568 PF13021 Domain of unknown function (DUF3885) BF89_5569 PF01966 HD domain BF89_557 PF00288 GHMP kinases N terminal domain BF89_557 PF08544 GHMP kinases C terminal BF89_5570 PF00486 Transcriptional regulatory protein, C terminal BF89_5570 PF00072 Response regulator receiver domain BF89_5571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_5571 PF00512 His Kinase A (phospho-acceptor) domain BF89_5572 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_5572 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_5573 PF05163 DinB family BF89_5575 PF00485 Phosphoribulokinase / Uridine kinase family BF89_5576 PF00583 Acetyltransferase (GNAT) family BF89_5578 PF13193 AMP-binding enzyme C-terminal domain BF89_5578 PF00501 AMP-binding enzyme BF89_5578 PF16177 Acetyl-coenzyme A synthetase N-terminus BF89_558 PF00291 Pyridoxal-phosphate dependent enzyme BF89_559 PF00742 Homoserine dehydrogenase BF89_559 PF03447 Homoserine dehydrogenase, NAD binding domain BF89_559 PF01842 ACT domain BF89_5590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF89_5599 PF08378 Nuclease-related domain BF89_56 PF07687 Peptidase dimerisation domain BF89_56 PF01546 Peptidase family M20/M25/M40 BF89_5605 PF01131 DNA topoisomerase BF89_5605 PF13342 C-terminal repeat of topoisomerase BF89_5605 PF01751 Toprim domain BF89_5607 PF00565 Staphylococcal nuclease homologue BF89_5610 PF02600 Disulfide bond formation protein DsbB BF89_5611 PF01022 Bacterial regulatory protein, arsR family BF89_5612 PF17209 Hfq protein BF89_5614 PF18801 response regulator aspartate phosphatase H, N terminal BF89_5619 PF00589 Phage integrase family BF89_5621 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF89_5622 PF01609 Transposase DDE domain BF89_5623 PF13276 HTH-like domain BF89_5623 PF00665 Integrase core domain BF89_5623 PF13333 Integrase core domain BF89_5625 PF13276 HTH-like domain BF89_5625 PF00665 Integrase core domain BF89_5625 PF13333 Integrase core domain BF89_5628 PF13276 HTH-like domain BF89_5628 PF13333 Integrase core domain BF89_5628 PF00665 Integrase core domain BF89_563 PF01522 Polysaccharide deacetylase BF89_563 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF89_5630 PF14436 Bacterial EndoU nuclease BF89_5630 PF04740 LXG domain of WXG superfamily BF89_5637 PF00589 Phage integrase family BF89_5637 PF02899 Phage integrase, N-terminal SAM-like domain BF89_5639 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF89_5639 PF18277 AbrB C-terminal domain BF89_564 PF04439 Streptomycin adenylyltransferase BF89_5644 PF09156 Anthrax toxin lethal factor, middle domain BF89_5644 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BF89_5648 PF01022 Bacterial regulatory protein, arsR family BF89_5649 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 BF89_5649 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain BF89_5649 PF07691 PA14 domain BF89_5649 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 BF89_565 PF00106 short chain dehydrogenase BF89_5651 PF05504 Spore germination B3/ GerAC like, C-terminal BF89_5652 PF03323 Bacillus/Clostridium GerA spore germination protein BF89_5653 PF03845 Spore germination protein BF89_5654 PF02796 Helix-turn-helix domain of resolvase BF89_5654 PF00239 Resolvase, N terminal domain BF89_5655 PF13700 Domain of unknown function (DUF4158) BF89_5655 PF01526 Tn3 transposase DDE domain BF89_5659 PF09385 Histidine kinase N terminal BF89_5660 PF09385 Histidine kinase N terminal BF89_5661 PF08279 HTH domain BF89_5661 PF05043 Mga helix-turn-helix domain BF89_5661 PF00874 PRD domain BF89_5662 PF02660 Glycerol-3-phosphate acyltransferase BF89_5667 PF00156 Phosphoribosyl transferase domain BF89_5668 PF00156 Phosphoribosyl transferase domain BF89_5669 PF03497 Anthrax toxin LF subunit BF89_5669 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BF89_567 PF16736 Single Cache-like BF89_567 PF00989 PAS fold BF89_567 PF00512 His Kinase A (phospho-acceptor) domain BF89_567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_5677 PF00665 Integrase core domain BF89_5677 PF13333 Integrase core domain BF89_5677 PF13276 HTH-like domain BF89_5681 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF89_5681 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF89_5681 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF89_5682 PF00483 Nucleotidyl transferase BF89_5683 PF00535 Glycosyl transferase family 2 BF89_5685 PF01569 PAP2 superfamily BF89_5686 PF00395 S-layer homology domain BF89_569 PF00072 Response regulator receiver domain BF89_569 PF00486 Transcriptional regulatory protein, C terminal BF89_5692 PF04235 Protein of unknown function (DUF418) BF89_5695 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) BF89_570 PF00005 ABC transporter BF89_570 PF00664 ABC transporter transmembrane region BF89_571 PF00664 ABC transporter transmembrane region BF89_571 PF00005 ABC transporter BF89_5722 PF00437 Type II/IV secretion system protein BF89_573 PF00877 NlpC/P60 family BF89_573 PF01476 LysM domain BF89_5741 PF09397 Ftsk gamma domain BF89_5741 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BF89_5741 PF17854 FtsK alpha domain BF89_5741 PF01580 FtsK/SpoIIIE family BF89_5746 PF01609 Transposase DDE domain BF89_5747 PF01609 Transposase DDE domain BF89_575 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_575 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_5752 PF01609 Transposase DDE domain BF89_5753 PF01609 Transposase DDE domain BF89_576 PF17676 LD-carboxypeptidase C-terminal domain BF89_576 PF02016 LD-carboxypeptidase N-terminal domain BF89_5767 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF89_5778 PF00877 NlpC/P60 family BF89_5787 PF12696 TraM recognition site of TraD and TraG BF89_579 PF00005 ABC transporter BF89_579 PF00664 ABC transporter transmembrane region BF89_5790 PF04956 TrbC/VIRB2 family BF89_5796 PF00437 Type II/IV secretion system protein BF89_580 PF00005 ABC transporter BF89_580 PF00664 ABC transporter transmembrane region BF89_5805 PF17631 Family of unknown function (DUF5512) BF89_5808 PF17362 Family of unknown function BF89_581 PF02322 Cytochrome bd terminal oxidase subunit II BF89_5812 PF08708 Primase C terminal 1 (PriCT-1) BF89_5813 PF13614 AAA domain BF89_5816 PF01520 N-acetylmuramoyl-L-alanine amidase BF89_5816 PF00395 S-layer homology domain BF89_5818 PF13276 HTH-like domain BF89_5818 PF13333 Integrase core domain BF89_5818 PF00665 Integrase core domain BF89_582 PF01654 Cytochrome bd terminal oxidase subunit I BF89_5822 PF01906 Putative heavy-metal-binding BF89_5823 PF02517 CPBP intramembrane metalloprotease BF89_5824 PF04463 Protein of unknown function (DUF523) BF89_5825 PF00440 Bacterial regulatory proteins, tetR family BF89_5826 PF01609 Transposase DDE domain BF89_5827 PF01609 Transposase DDE domain BF89_5828 PF01569 PAP2 superfamily BF89_5829 PF01569 PAP2 superfamily BF89_5831 PF08280 M protein trans-acting positive regulator (MGA) HTH domain BF89_5831 PF05043 Mga helix-turn-helix domain BF89_5835 PF09587 Bacterial capsule synthesis protein PGA_cap BF89_5836 PF14102 Capsule biosynthesis CapC BF89_5837 PF08245 Mur ligase middle domain BF89_5839 PF01022 Bacterial regulatory protein, arsR family BF89_584 PF01047 MarR family BF89_5840 PF01609 Transposase DDE domain BF89_5842 PF10502 Signal peptidase, peptidase S26 BF89_5845 PF09385 Histidine kinase N terminal BF89_5846 PF05043 Mga helix-turn-helix domain BF89_5846 PF00874 PRD domain BF89_5846 PF08279 HTH domain BF89_5847 PF08279 HTH domain BF89_5847 PF00874 PRD domain BF89_5847 PF05043 Mga helix-turn-helix domain BF89_5850 PF01810 LysE type translocator BF89_5851 PF00874 PRD domain BF89_5851 PF05043 Mga helix-turn-helix domain BF89_5851 PF08280 M protein trans-acting positive regulator (MGA) HTH domain BF89_5855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_5858 PF13411 MerR HTH family regulatory protein BF89_5858 PF13152 Protein of unknown function (DUF3967) BF89_5859 PF11798 IMS family HHH motif BF89_5859 PF00817 impB/mucB/samB family BF89_5859 PF11799 impB/mucB/samB family C-terminal domain BF89_5863 PF17443 Uncharacterized protein pXO2-72 BF89_5870 PF01751 Toprim domain BF89_5870 PF01131 DNA topoisomerase BF89_5871 PF01131 DNA topoisomerase BF89_5871 PF01751 Toprim domain BF89_5872 PF13154 Protein of unknown function (DUF3991) BF89_5875 PF18840 Large polyvalent protein associated domain 25 BF89_5876 PF17630 Family of unknown function (DUF5511) BF89_5877 PF17633 Family of unknown function (DUF5514) BF89_588 PF03466 LysR substrate binding domain BF89_588 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_5884 PF17632 Family of unknown function (DUF5513) BF89_590 PF02653 Branched-chain amino acid transport system / permease component BF89_591 PF00005 ABC transporter BF89_592 PF00005 ABC transporter BF89_592 PF12399 Branched-chain amino acid ATP-binding cassette transporter BF89_594 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF89_594 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF89_595 PF01575 MaoC like domain BF89_596 PF00501 AMP-binding enzyme BF89_596 PF13193 AMP-binding enzyme C-terminal domain BF89_599 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF89_599 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF89_6 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF89_6 PF02770 Acyl-CoA dehydrogenase, middle domain BF89_6 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF89_600 PF01593 Flavin containing amine oxidoreductase BF89_601 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF89_601 PF00056 lactate/malate dehydrogenase, NAD binding domain BF89_602 PF01594 AI-2E family transporter BF89_603 PF01425 Amidase BF89_605 PF00881 Nitroreductase family BF89_606 PF01323 DSBA-like thioredoxin domain BF89_607 PF02082 Transcriptional regulator BF89_608 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_608 PF03466 LysR substrate binding domain BF89_609 PF00892 EamA-like transporter family BF89_61 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BF89_611 PF07987 Domain of unkown function (DUF1775) BF89_612 PF13115 YtkA-like BF89_612 PF05425 Copper resistance protein D BF89_612 PF04234 CopC domain BF89_614 PF05525 Branched-chain amino acid transport protein BF89_615 PF05525 Branched-chain amino acid transport protein BF89_616 PF02525 Flavodoxin-like fold BF89_62 PF00300 Histidine phosphatase superfamily (branch 1) BF89_621 PF01551 Peptidase family M23 BF89_622 PF07732 Multicopper oxidase BF89_622 PF07731 Multicopper oxidase BF89_623 PF05195 Aminopeptidase P, N-terminal domain BF89_623 PF00557 Metallopeptidase family M24 BF89_627 PF05979 Bacterial protein of unknown function (DUF896) BF89_628 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF89_629 PF02885 Glycosyl transferase family, helical bundle domain BF89_629 PF00591 Glycosyl transferase family, a/b domain BF89_629 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF89_63 PF12802 MarR family BF89_630 PF01773 Na+ dependent nucleoside transporter N-terminus BF89_630 PF07662 Na+ dependent nucleoside transporter C-terminus BF89_631 PF01791 DeoC/LacD family aldolase BF89_632 PF04198 Putative sugar-binding domain BF89_634 PF05791 Bacillus haemolytic enterotoxin (HBL) BF89_635 PF05791 Bacillus haemolytic enterotoxin (HBL) BF89_637 PF13520 Amino acid permease BF89_638 PF13520 Amino acid permease BF89_64 PF00205 Thiamine pyrophosphate enzyme, central domain BF89_64 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF89_64 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF89_640 PF02558 Ketopantoate reductase PanE/ApbA BF89_640 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF89_643 PF01566 Natural resistance-associated macrophage protein BF89_645 PF00512 His Kinase A (phospho-acceptor) domain BF89_645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_647 PF00072 Response regulator receiver domain BF89_647 PF00486 Transcriptional regulatory protein, C terminal BF89_648 PF13302 Acetyltransferase (GNAT) domain BF89_649 PF04055 Radical SAM superfamily BF89_649 PF13186 Iron-sulfur cluster-binding domain BF89_65 PF08241 Methyltransferase domain BF89_653 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_654 PF13026 Protein of unknown function (DUF3887) BF89_654 PF12146 Serine aminopeptidase, S33 BF89_655 PF01979 Amidohydrolase family BF89_658 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BF89_658 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BF89_659 PF00072 Response regulator receiver domain BF89_659 PF04397 LytTr DNA-binding domain BF89_661 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BF89_662 PF07690 Major Facilitator Superfamily BF89_663 PF07690 Major Facilitator Superfamily BF89_666 PF09587 Bacterial capsule synthesis protein PGA_cap BF89_667 PF09587 Bacterial capsule synthesis protein PGA_cap BF89_669 PF00291 Pyridoxal-phosphate dependent enzyme BF89_669 PF00585 C-terminal regulatory domain of Threonine dehydratase BF89_67 PF03848 Tellurite resistance protein TehB BF89_67 PF09313 Domain of unknown function (DUF1971) BF89_670 PF00920 Dehydratase family BF89_671 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF89_671 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF89_672 PF10369 Small subunit of acetolactate synthase BF89_673 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF89_673 PF00205 Thiamine pyrophosphate enzyme, central domain BF89_673 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF89_674 PF01063 Amino-transferase class IV BF89_676 PF01625 Peptide methionine sulfoxide reductase BF89_68 PF00005 ABC transporter BF89_68 PF02687 FtsX-like permease family BF89_68 PF12704 MacB-like periplasmic core domain BF89_680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF89_680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF89_683 PF04239 Protein of unknown function (DUF421) BF89_685 PF01522 Polysaccharide deacetylase BF89_685 PF00457 Glycosyl hydrolases family 11 BF89_685 PF03422 Carbohydrate binding module (family 6) BF89_686 PF00209 Sodium:neurotransmitter symporter family BF89_687 PF01943 Polysaccharide biosynthesis protein BF89_687 PF14667 Polysaccharide biosynthesis C-terminal domain BF89_690 PF00291 Pyridoxal-phosphate dependent enzyme BF89_691 PF00291 Pyridoxal-phosphate dependent enzyme BF89_692 PF07690 Major Facilitator Superfamily BF89_693 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF89_694 PF01926 50S ribosome-binding GTPase BF89_694 PF16360 GTP-binding GTPase Middle Region BF89_694 PF13167 GTP-binding GTPase N-terminal BF89_696 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF89_696 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF89_697 PF07690 Major Facilitator Superfamily BF89_698 PF03976 Polyphosphate kinase 2 (PPK2) BF89_699 PF02554 Carbon starvation protein CstA BF89_702 PF07690 Major Facilitator Superfamily BF89_704 PF02368 Bacterial Ig-like domain (group 2) BF89_704 PF13205 Bacterial Ig-like domain BF89_704 PF00395 S-layer homology domain BF89_705 PF00293 NUDIX domain BF89_707 PF14158 YndJ-like protein BF89_708 PF13761 Domain of unknown function (DUF4166) BF89_711 PF13840 ACT domain BF89_711 PF00696 Amino acid kinase family BF89_715 PF03590 Aspartate-ammonia ligase BF89_717 PF00271 Helicase conserved C-terminal domain BF89_717 PF00176 SNF2 family N-terminal domain BF89_717 PF04434 SWIM zinc finger BF89_718 PF08664 YcbB domain BF89_718 PF00072 Response regulator receiver domain BF89_719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_720 PF00390 Malic enzyme, N-terminal domain BF89_720 PF03949 Malic enzyme, NAD binding domain BF89_721 PF00206 Lyase BF89_721 PF10415 Fumarase C C-terminus BF89_722 PF00375 Sodium:dicarboxylate symporter family BF89_723 PF00696 Amino acid kinase family BF89_724 PF13091 PLD-like domain BF89_727 PF00005 ABC transporter BF89_728 PF13185 GAF domain BF89_728 PF07730 Histidine kinase BF89_728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_728 PF13492 GAF domain BF89_729 PF00072 Response regulator receiver domain BF89_729 PF00196 Bacterial regulatory proteins, luxR family BF89_73 PF00440 Bacterial regulatory proteins, tetR family BF89_73 PF17932 Tetracyclin repressor-like, C-terminal domain BF89_734 PF04286 Protein of unknown function (DUF445) BF89_735 PF00291 Pyridoxal-phosphate dependent enzyme BF89_740 PF00578 AhpC/TSA family BF89_741 PF02683 Cytochrome C biogenesis protein transmembrane region BF89_745 PF03575 Peptidase family S51 BF89_746 PF01554 MatE BF89_747 PF01554 MatE BF89_75 PF00270 DEAD/DEAH box helicase BF89_75 PF00271 Helicase conserved C-terminal domain BF89_751 PF00206 Lyase BF89_751 PF10415 Fumarase C C-terminus BF89_752 PF03553 Na+/H+ antiporter family BF89_753 PF00535 Glycosyl transferase family 2 BF89_755 PF03773 Predicted permease BF89_756 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF89_756 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF89_757 PF00892 EamA-like transporter family BF89_758 PF00392 Bacterial regulatory proteins, gntR family BF89_758 PF07729 FCD domain BF89_760 PF16916 Dimerisation domain of Zinc Transporter BF89_760 PF01545 Cation efflux family BF89_764 PF00733 Asparagine synthase BF89_764 PF13537 Glutamine amidotransferase domain BF89_771 PF00300 Histidine phosphatase superfamily (branch 1) BF89_773 PF07943 Penicillin-binding protein 5, C-terminal domain BF89_773 PF00768 D-alanyl-D-alanine carboxypeptidase BF89_776 PF10787 Uncharacterised protein from bacillus cereus group BF89_778 PF00753 Metallo-beta-lactamase superfamily BF89_778 PF12706 Beta-lactamase superfamily domain BF89_779 PF00528 Binding-protein-dependent transport system inner membrane component BF89_78 PF00753 Metallo-beta-lactamase superfamily BF89_78 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF89_781 PF08402 TOBE domain BF89_781 PF00005 ABC transporter BF89_782 PF03466 LysR substrate binding domain BF89_782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF89_787 PF08141 Small acid-soluble spore protein H family BF89_788 PF03992 Antibiotic biosynthesis monooxygenase BF89_791 PF17329 Family of unknown function (DUF5367) BF89_792 PF00440 Bacterial regulatory proteins, tetR family BF89_792 PF17932 Tetracyclin repressor-like, C-terminal domain BF89_797 PF01411 tRNA synthetases class II (A) BF89_797 PF02272 DHHA1 domain BF89_797 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF89_798 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF89_798 PF00460 Flagella basal body rod protein BF89_799 PF00448 SRP54-type protein, GTPase domain BF89_800 PF00771 FHIPEP family BF89_801 PF01312 FlhB HrpN YscU SpaS Family BF89_803 PF01313 Bacterial export proteins, family 3 BF89_804 PF00813 FliP family BF89_806 PF04509 CheC-like family BF89_806 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF89_808 PF02154 Flagellar motor switch protein FliM BF89_808 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF89_809 PF01464 Transglycosylase SLT domain BF89_81 PF00291 Pyridoxal-phosphate dependent enzyme BF89_810 PF00669 Bacterial flagellin N-terminal helical region BF89_810 PF00700 Bacterial flagellin C-terminal helical region BF89_815 PF13181 Tetratricopeptide repeat BF89_815 PF00535 Glycosyl transferase family 2 BF89_82 PF00266 Aminotransferase class-V BF89_821 PF00535 Glycosyl transferase family 2 BF89_822 PF12181 DNA binding domain of the motility gene repressor (MogR) BF89_823 PF01584 CheW-like domain BF89_823 PF00072 Response regulator receiver domain BF89_827 PF07559 Flagellar basal body protein FlaE BF89_827 PF00460 Flagella basal body rod protein BF89_827 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF89_83 PF02660 Glycerol-3-phosphate acyltransferase BF89_832 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF89_832 PF18269 T3SS EscN ATPase C-terminal domain BF89_832 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF89_834 PF01706 FliG C-terminal domain BF89_834 PF14841 FliG middle domain BF89_834 PF14842 FliG N-terminal domain BF89_836 PF08345 Flagellar M-ring protein C-terminal BF89_836 PF01514 Secretory protein of YscJ/FliF family BF89_837 PF02049 Flagellar hook-basal body complex protein FliE BF89_838 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF89_838 PF00460 Flagella basal body rod protein BF89_839 PF00460 Flagella basal body rod protein BF89_84 PF01869 BadF/BadG/BcrA/BcrD ATPase family BF89_844 PF00669 Bacterial flagellin N-terminal helical region BF89_844 PF00700 Bacterial flagellin C-terminal helical region BF89_845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF89_845 PF00460 Flagella basal body rod protein BF89_85 PF03702 Anhydro-N-acetylmuramic acid kinase BF89_850 PF01739 CheR methyltransferase, SAM binding domain BF89_850 PF03705 CheR methyltransferase, all-alpha domain BF89_853 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF89_853 PF04509 CheC-like family BF89_854 PF01627 Hpt domain BF89_854 PF07194 P2 response regulator binding domain BF89_854 PF02895 Signal transducing histidine kinase, homodimeric domain BF89_854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_854 PF01584 CheW-like domain BF89_855 PF01584 CheW-like domain BF89_855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF89_855 PF02895 Signal transducing histidine kinase, homodimeric domain BF89_855 PF01627 Hpt domain BF89_855 PF07194 P2 response regulator binding domain BF89_856 PF00072 Response regulator receiver domain BF89_857 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF89_857 PF00691 OmpA family BF89_858 PF01618 MotA/TolQ/ExbB proton channel family BF89_860 PF17209 Hfq protein BF89_869 PF00881 Nitroreductase family BF89_87 PF02378 Phosphotransferase system, EIIC BF89_871 PF02698 DUF218 domain BF89_872 PF04239 Protein of unknown function (DUF421) BF89_874 PF13411 MerR HTH family regulatory protein BF89_874 PF06445 GyrI-like small molecule binding domain BF89_875 PF17770 Ribonuclease J C-terminal domain BF89_875 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF89_875 PF00753 Metallo-beta-lactamase superfamily BF89_876 PF00999 Sodium/hydrogen exchanger family BF89_878 PF00202 Aminotransferase class-III BF89_879 PF00474 Sodium:solute symporter family BF89_880 PF04341 Protein of unknown function, DUF485 BF89_883 PF01810 LysE type translocator BF89_885 PF00313 'Cold-shock' DNA-binding domain BF89_89 PF02638 Glycosyl hydrolase-like 10 BF89_890 PF01263 Aldose 1-epimerase BF89_891 PF13456 Reverse transcriptase-like BF89_895 PF18014 Acetyltransferase (GNAT) domain BF89_895 PF13673 Acetyltransferase (GNAT) domain BF89_898 PF13439 Glycosyltransferase Family 4 BF89_898 PF00534 Glycosyl transferases group 1 BF89_9 PF00440 Bacterial regulatory proteins, tetR family BF89_9 PF08359 YsiA-like protein, C-terminal region BF89_901 PF00535 Glycosyl transferase family 2 BF89_904 PF02397 Bacterial sugar transferase BF89_909 PF01367 5'-3' exonuclease, C-terminal SAM fold BF89_909 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF89_910 PF00690 Cation transporter/ATPase, N-terminus BF89_910 PF00689 Cation transporting ATPase, C-terminus BF89_912 PF03738 Glutathionylspermidine synthase preATP-grasp BF89_915 PF00581 Rhodanese-like domain BF89_916 PF10752 Protein of unknown function (DUF2533) BF89_917 PF00583 Acetyltransferase (GNAT) family BF89_919 PF00350 Dynamin family BF89_921 PF04235 Protein of unknown function (DUF418) BF89_922 PF00860 Permease family BF89_923 PF00156 Phosphoribosyl transferase domain BF89_924 PF00557 Metallopeptidase family M24 BF89_925 PF01636 Phosphotransferase enzyme family BF89_927 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BF89_928 PF13307 Helicase C-terminal domain BF89_930 PF01170 Putative RNA methylase family UPF0020 BF89_930 PF02926 THUMP domain BF89_931 PF05103 DivIVA protein BF89_932 PF06908 YspA SLOG family BF89_939 PF10720 Protein of unknown function (DUF2515) BF89_94 PF08281 Sigma-70, region 4 BF89_94 PF04542 Sigma-70 region 2 BF89_94 PF12680 SnoaL-like domain BF89_940 PF03838 Recombination protein U BF89_941 PF00905 Penicillin binding protein transpeptidase domain BF89_941 PF00912 Transglycosylase BF89_943 PF00730 HhH-GPD superfamily base excision DNA repair protein BF89_943 PF00633 Helix-hairpin-helix motif BF89_943 PF10576 Iron-sulfur binding domain of endonuclease III BF89_944 PF07261 Replication initiation and membrane attachment BF89_945 PF00155 Aminotransferase class I and II BF89_947 PF14084 Protein of unknown function (DUF4264) BF89_948 PF00929 Exonuclease BF89_948 PF04851 Type III restriction enzyme, res subunit BF89_948 PF13307 Helicase C-terminal domain BF89_949 PF13307 Helicase C-terminal domain BF89_949 PF04851 Type III restriction enzyme, res subunit BF89_949 PF00929 Exonuclease BF89_95 PF00890 FAD binding domain BF89_950 PF02261 Aspartate decarboxylase BF89_951 PF02569 Pantoate-beta-alanine ligase BF89_952 PF02548 Ketopantoate hydroxymethyltransferase BF89_954 PF08279 HTH domain BF89_954 PF03099 Biotin/lipoate A/B protein ligase family BF89_954 PF02237 Biotin protein ligase C terminal domain BF89_955 PF13735 tRNA nucleotidyltransferase domain 2 putative BF89_955 PF12627 Probable RNA and SrmB- binding site of polymerase A BF89_955 PF01743 Poly A polymerase head domain BF89_956 PF13439 Glycosyltransferase Family 4 BF89_956 PF00534 Glycosyl transferases group 1 BF89_957 PF02585 GlcNAc-PI de-N-acetylase BF89_958 PF02142 MGS-like domain BF89_959 PF05173 Dihydrodipicolinate reductase, C-terminus BF89_959 PF01113 Dihydrodipicolinate reductase, N-terminus BF89_960 PF03819 MazG nucleotide pyrophosphohydrolase domain BF89_961 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF89_961 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF89_963 PF04298 Putative neutral zinc metallopeptidase BF89_964 PF09577 Sporulation protein YpjB (SpoYpjB) BF89_966 PF07187 Protein of unknown function (DUF1405) BF89_967 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF89_967 PF00032 Cytochrome b(C-terminal)/b6/petD BF89_968 PF00033 Cytochrome b/b6/petB BF89_969 PF00355 Rieske [2Fe-2S] domain BF89_970 PF10673 Protein of unknown function (DUF2487) BF89_971 PF08864 UPF0302 domain BF89_971 PF08858 IDEAL domain BF89_973 PF00155 Aminotransferase class I and II BF89_974 PF01761 3-dehydroquinate synthase BF89_975 PF01264 Chorismate synthase BF89_976 PF00334 Nucleoside diphosphate kinase BF89_977 PF00348 Polyprenyl synthetase BF89_978 PF01209 ubiE/COQ5 methyltransferase family BF89_979 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BF89_980 PF01227 GTP cyclohydrolase I BF89_981 PF00216 Bacterial DNA-binding protein BF89_982 PF09547 Stage IV sporulation protein A (spore_IV_A) BF89_984 PF10966 Protein of unknown function (DUF2768) BF89_986 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF89_986 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF89_987 PF01926 50S ribosome-binding GTPase BF89_987 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF89_989 PF14045 YIEGIA protein BF89_991 PF14140 YpzI-like protein BF89_992 PF01070 FMN-dependent dehydrogenase BF89_993 PF00575 S1 RNA binding domain BF89_994 PF02224 Cytidylate kinase BF89_996 PF00710 Asparaginase, N-terminal BF89_996 PF17763 Glutaminase/Asparaginase C-terminal domain