BF89_100 SM00530 Helix-turn-helix XRE-family like proteins BF89_1001 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF89_1003 SM00422 helix_turn_helix, mercury resistance BF89_1005 SM00257 Lysin motif BF89_1007 SM00487 DEAD-like helicases superfamily BF89_1007 SM00490 helicase superfamily c-terminal domain BF89_1012 SM00257 Lysin motif BF89_1014 SM00091 PAS domain BF89_1014 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_1014 SM00387 Histidine kinase-like ATPases BF89_1014 SM00388 His Kinase A (phosphoacceptor) domain BF89_1015 SM00448 cheY-homologous receiver domain BF89_1015 SM00862 Transcriptional regulatory protein, C terminal BF89_1019 SM00363 S4 RNA-binding domain BF89_102 SM00646 BF89_102 BF89_1030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_1030 SM00387 Histidine kinase-like ATPases BF89_1030 SM00388 His Kinase A (phosphoacceptor) domain BF89_1034 SM00091 PAS domain BF89_1034 SM00388 His Kinase A (phosphoacceptor) domain BF89_104 SM00382 ATPases associated with a variety of cellular activities BF89_105 SM00382 ATPases associated with a variety of cellular activities BF89_1052 SM00421 helix_turn_helix, Lux Regulon BF89_1052 SM00448 cheY-homologous receiver domain BF89_1053 SM00387 Histidine kinase-like ATPases BF89_1089 SM01329 BF89_1089 BF89_1090 SM00917 LeuA allosteric (dimerisation) domain BF89_11 SM00382 ATPases associated with a variety of cellular activities BF89_1104 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_112 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF89_1128 SM00344 helix_turn_helix ASNC type BF89_1132 SM00382 ATPases associated with a variety of cellular activities BF89_1134 SM00382 ATPases associated with a variety of cellular activities BF89_1135 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_1138 SM00465 GIY-YIG type nucleases (URI domain) BF89_1138 SM00496 Intron-encoded nuclease repeat 2 BF89_1151 SM00387 Histidine kinase-like ATPases BF89_1151 SM00388 His Kinase A (phosphoacceptor) domain BF89_1155 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_1156 SM00387 Histidine kinase-like ATPases BF89_1156 SM00388 His Kinase A (phosphoacceptor) domain BF89_1162 SM00365 Leucine-rich repeat, SDS22-like subfamily BF89_1162 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF89_1166 SM00420 helix_turn_helix, Deoxyribose operon repressor BF89_1166 SM01134 BF89_1166 BF89_1182 SM00822 BF89_1182 BF89_1197 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_1197 SM00895 BF89_1197 BF89_1198 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_1198 SM00387 Histidine kinase-like ATPases BF89_1198 SM00388 His Kinase A (phosphoacceptor) domain BF89_1199 SM00448 cheY-homologous receiver domain BF89_1199 SM00862 Transcriptional regulatory protein, C terminal BF89_1209 SM00014 Acid phosphatase homologues BF89_1213 SM00382 ATPases associated with a variety of cellular activities BF89_1216 SM00530 Helix-turn-helix XRE-family like proteins BF89_1234 SM00530 Helix-turn-helix XRE-family like proteins BF89_1235 SM00861 Transketolase, pyrimidine binding domain BF89_125 SM00357 Cold shock protein domain BF89_1257 SM00635 Bacterial Ig-like domain 2 BF89_1288 SM00954 Region found in RelA / SpoT proteins BF89_1290 SM01118 BF89_1290 BF89_1296 SM00155 Phospholipase D. Active site motifs. BF89_1303 SM00382 ATPases associated with a variety of cellular activities BF89_1304 SM00382 ATPases associated with a variety of cellular activities BF89_1312 SM00825 Beta-ketoacyl synthase BF89_1318 SM00382 ATPases associated with a variety of cellular activities BF89_1318 SM01086 C-terminal, D2-small domain, of ClpB protein BF89_1328 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_133 SM00530 Helix-turn-helix XRE-family like proteins BF89_1332 SM00642 Alpha-amylase domain BF89_1334 SM01060 BF89_1334 BF89_1356 SM00357 Cold shock protein domain BF89_1364 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_1364 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_1370 SM00448 cheY-homologous receiver domain BF89_1370 SM00862 Transcriptional regulatory protein, C terminal BF89_1371 SM00387 Histidine kinase-like ATPases BF89_1371 SM00388 His Kinase A (phosphoacceptor) domain BF89_1374 SM00342 helix_turn_helix, arabinose operon control protein BF89_1374 SM00871 Bacterial transcription activator, effector binding domain BF89_1377 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_138 SM01059 Chloramphenicol acetyltransferase BF89_1389 SM00725 NEAr Transporter domain BF89_1394 SM00849 Metallo-beta-lactamase superfamily BF89_1396 SM00354 helix_turn _helix lactose operon repressor BF89_14 SM00450 Rhodanese Homology Domain BF89_14 SM00849 Metallo-beta-lactamase superfamily BF89_1417 SM00422 helix_turn_helix, mercury resistance BF89_142 SM00849 Metallo-beta-lactamase superfamily BF89_1431 SM00382 ATPases associated with a variety of cellular activities BF89_1434 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_1443 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_1454 SM00530 Helix-turn-helix XRE-family like proteins BF89_1458 SM00028 Tetratricopeptide repeats BF89_1463 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_1471 SM00829 Enoylreductase BF89_1478 SM00387 Histidine kinase-like ATPases BF89_1478 SM00388 His Kinase A (phosphoacceptor) domain BF89_1478 SM00448 cheY-homologous receiver domain BF89_1479 SM00138 Methyltransferase, chemotaxis proteins BF89_148 SM00849 Metallo-beta-lactamase superfamily BF89_1480 SM00331 Sigma factor PP2C-like phosphatases BF89_1480 SM00448 cheY-homologous receiver domain BF89_1493 SM00460 Transglutaminase/protease-like homologues BF89_1498 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_1505 SM01120 BF89_1505 BF89_1512 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_1538 SM00422 helix_turn_helix, mercury resistance BF89_1544 SM00448 cheY-homologous receiver domain BF89_1545 SM00091 PAS domain BF89_1545 SM00387 Histidine kinase-like ATPases BF89_1547 SM00860 SMI1 / KNR4 family BF89_1548 SM00860 SMI1 / KNR4 family BF89_1552 SM00382 ATPases associated with a variety of cellular activities BF89_1566 SM00646 BF89_1566 BF89_1577 SM00635 Bacterial Ig-like domain 2 BF89_1580 SM00957 SecA DEAD-like domain BF89_1580 SM00958 SecA preprotein cross-linking domain BF89_1587 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_1589 SM00644 BF89_1589 BF89_1604 SM00382 ATPases associated with a variety of cellular activities BF89_1606 SM00062 Bacterial periplasmic substrate-binding proteins BF89_1606 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF89_1607 SM00382 ATPases associated with a variety of cellular activities BF89_1609 SM00382 ATPases associated with a variety of cellular activities BF89_161 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF89_1615 SM01060 BF89_1615 BF89_162 SM00363 S4 RNA-binding domain BF89_1628 SM00344 helix_turn_helix ASNC type BF89_1648 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF89_1659 SM00382 ATPases associated with a variety of cellular activities BF89_1661 SM00287 Bacterial SH3 domain homologues BF89_1671 SM00829 Enoylreductase BF89_1676 SM00450 Rhodanese Homology Domain BF89_1680 SM00450 Rhodanese Homology Domain BF89_1680 SM00849 Metallo-beta-lactamase superfamily BF89_1681 SM00450 Rhodanese Homology Domain BF89_1683 SM00450 Rhodanese Homology Domain BF89_1686 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_1699 SM00354 helix_turn _helix lactose operon repressor BF89_17 SM00860 SMI1 / KNR4 family BF89_1701 SM00640 Glycosyl hydrolases family 32 BF89_1709 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_171 SM00411 bacterial (prokaryotic) histone like domain BF89_1726 SM00382 ATPases associated with a variety of cellular activities BF89_1728 SM00287 Bacterial SH3 domain homologues BF89_1731 SM00116 Domain in cystathionine beta-synthase and other proteins. BF89_175 SM00923 MbtH-like protein BF89_176 SM00823 Phosphopantetheine attachment site BF89_176 SM00824 Thioesterase BF89_1761 SM00899 BF89_1761 BF89_1779 SM00530 Helix-turn-helix XRE-family like proteins BF89_1788 SM00530 Helix-turn-helix XRE-family like proteins BF89_1790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_1797 SM00770 Zinc dependent phospholipase C (alpha toxin) BF89_1799 SM00829 Enoylreductase BF89_1806 SM00382 ATPases associated with a variety of cellular activities BF89_1809 SM00354 helix_turn _helix lactose operon repressor BF89_1812 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_1814 SM00382 ATPases associated with a variety of cellular activities BF89_1815 SM00382 ATPases associated with a variety of cellular activities BF89_1823 SM00448 cheY-homologous receiver domain BF89_1823 SM00862 Transcriptional regulatory protein, C terminal BF89_1824 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_1824 SM00387 Histidine kinase-like ATPases BF89_1824 SM00388 His Kinase A (phosphoacceptor) domain BF89_1834 SM00062 Bacterial periplasmic substrate-binding proteins BF89_1834 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF89_1835 SM00382 ATPases associated with a variety of cellular activities BF89_184 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_1842 SM00642 Alpha-amylase domain BF89_1844 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_1844 SM00866 BF89_1844 BF89_1846 SM00052 Putative diguanylate phosphodiesterase BF89_1846 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF89_1846 SM00091 PAS domain BF89_1846 SM00267 diguanylate cyclase BF89_1849 SM00155 Phospholipase D. Active site motifs. BF89_1850 SM00382 ATPases associated with a variety of cellular activities BF89_1851 SM00327 von Willebrand factor (vWF) type A domain BF89_1856 SM00382 ATPases associated with a variety of cellular activities BF89_1862 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_1875 SM00028 Tetratricopeptide repeats BF89_1875 SM00530 Helix-turn-helix XRE-family like proteins BF89_1878 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_1880 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF89_1880 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF89_1884 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF89_1884 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF89_1888 SM00448 cheY-homologous receiver domain BF89_1888 SM00862 Transcriptional regulatory protein, C terminal BF89_1889 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_1889 SM00387 Histidine kinase-like ATPases BF89_1889 SM00388 His Kinase A (phosphoacceptor) domain BF89_1891 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_1894 SM00919 Malic enzyme, NAD binding domain BF89_1894 SM01274 BF89_1894 BF89_1896 SM00448 cheY-homologous receiver domain BF89_1897 SM00387 Histidine kinase-like ATPases BF89_1898 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_1898 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_19 SM00052 Putative diguanylate phosphodiesterase BF89_19 SM00091 PAS domain BF89_19 SM00267 diguanylate cyclase BF89_1901 SM00387 Histidine kinase-like ATPases BF89_1901 SM00388 His Kinase A (phosphoacceptor) domain BF89_1902 SM00448 cheY-homologous receiver domain BF89_1902 SM00862 Transcriptional regulatory protein, C terminal BF89_1908 SM00382 ATPases associated with a variety of cellular activities BF89_1910 SM00248 ankyrin repeats BF89_1914 SM00448 cheY-homologous receiver domain BF89_1915 SM00091 PAS domain BF89_1915 SM00387 Histidine kinase-like ATPases BF89_1916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_1916 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_1917 SM00244 prohibitin homologues BF89_1919 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF89_1922 SM00364 Leucine-rich repeats, bacterial type BF89_1922 SM00365 Leucine-rich repeat, SDS22-like subfamily BF89_1922 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF89_1922 SM00725 NEAr Transporter domain BF89_1924 SM00763 PrkA AAA domain BF89_1926 SM00052 Putative diguanylate phosphodiesterase BF89_1926 SM00091 PAS domain BF89_1926 SM00267 diguanylate cyclase BF89_1929 SM00567 E-Z type HEAT repeats BF89_1962 SM00382 ATPases associated with a variety of cellular activities BF89_1966 SM00382 ATPases associated with a variety of cellular activities BF89_1971 SM00478 endonuclease III BF89_1971 SM00525 BF89_1971 BF89_1987 SM00984 UDP binding domain BF89_1998 SM00530 Helix-turn-helix XRE-family like proteins BF89_2002 SM00382 ATPases associated with a variety of cellular activities BF89_2051 SM00382 ATPases associated with a variety of cellular activities BF89_2058 SM00530 Helix-turn-helix XRE-family like proteins BF89_2064 SM00478 endonuclease III BF89_2084 SM00226 Low molecular weight phosphatase family BF89_2086 SM00831 Cation transporter/ATPase, N-terminus BF89_2095 SM00946 Prolyl-tRNA synthetase, C-terminal BF89_21 SM00382 ATPases associated with a variety of cellular activities BF89_2100 SM00530 Helix-turn-helix XRE-family like proteins BF89_2107 SM00060 Fibronectin type 3 domain BF89_2107 SM00636 BF89_2107 BF89_2108 SM00382 ATPases associated with a variety of cellular activities BF89_2109 SM00382 ATPases associated with a variety of cellular activities BF89_2113 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_2113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2117 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF89_2117 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF89_2117 SM00493 BF89_2117 BF89_212 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF89_2121 SM00642 Alpha-amylase domain BF89_2122 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_2122 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2123 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_2123 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2124 SM00382 ATPases associated with a variety of cellular activities BF89_2125 SM00062 Bacterial periplasmic substrate-binding proteins BF89_2125 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF89_2146 SM01007 Class II Aldolase and Adducin N-terminal domain BF89_2155 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF89_2168 SM00382 ATPases associated with a variety of cellular activities BF89_2171 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF89_2172 SM00845 GatB domain BF89_2176 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_2183 SM00382 ATPases associated with a variety of cellular activities BF89_2183 SM00930 BF89_2183 BF89_2189 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF89_2189 SM00292 breast cancer carboxy-terminal domain BF89_2189 SM00532 Ligase N family BF89_2193 SM00244 prohibitin homologues BF89_2195 SM01209 BF89_2195 BF89_2195 SM01210 BF89_2195 BF89_2196 SM00798 AICARFT/IMPCHase bienzyme BF89_2196 SM00851 MGS-like domain BF89_2201 SM01211 BF89_2201 BF89_2204 SM00998 Adenylosuccinate lyase C-terminus BF89_2206 SM01001 AIR carboxylase BF89_2211 SM00448 cheY-homologous receiver domain BF89_2211 SM00862 Transcriptional regulatory protein, C terminal BF89_2212 SM00387 Histidine kinase-like ATPases BF89_2212 SM00388 His Kinase A (phosphoacceptor) domain BF89_2213 SM00382 ATPases associated with a variety of cellular activities BF89_2221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2221 SM00387 Histidine kinase-like ATPases BF89_2221 SM00388 His Kinase A (phosphoacceptor) domain BF89_2222 SM00448 cheY-homologous receiver domain BF89_2222 SM00862 Transcriptional regulatory protein, C terminal BF89_2226 SM00883 Chaperonin 10 Kd subunit BF89_2229 SM00881 CoA binding domain BF89_223 SM00530 Helix-turn-helix XRE-family like proteins BF89_2230 SM00382 ATPases associated with a variety of cellular activities BF89_2252 SM00731 SprT homologues. BF89_2253 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_2253 SM00732 Likely ribonuclease with RNase H fold. BF89_2256 SM01005 Alanine racemase, C-terminal domain BF89_2261 SM00487 DEAD-like helicases superfamily BF89_2261 SM00490 helicase superfamily c-terminal domain BF89_2274 SM00382 ATPases associated with a variety of cellular activities BF89_2275 SM00382 ATPases associated with a variety of cellular activities BF89_228 SM00860 SMI1 / KNR4 family BF89_2281 SM00382 ATPases associated with a variety of cellular activities BF89_2291 SM00354 helix_turn _helix lactose operon repressor BF89_2293 SM00563 Phosphate acyltransferases BF89_230 SM00014 Acid phosphatase homologues BF89_2311 SM00342 helix_turn_helix, arabinose operon control protein BF89_2314 SM00382 ATPases associated with a variety of cellular activities BF89_2315 SM00382 ATPases associated with a variety of cellular activities BF89_2326 SM00829 Enoylreductase BF89_2328 SM00382 ATPases associated with a variety of cellular activities BF89_2328 SM00930 BF89_2328 BF89_233 SM00219 Tyrosine kinase, catalytic domain BF89_2338 SM01350 BF89_2338 BF89_2341 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_2341 SM00895 BF89_2341 BF89_2365 SM01251 BF89_2365 BF89_2368 SM00646 BF89_2368 BF89_2374 SM00382 ATPases associated with a variety of cellular activities BF89_2375 SM00382 ATPases associated with a variety of cellular activities BF89_2377 SM00662 RNA polymerases D BF89_2381 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_2393 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF89_2394 SM01374 BF89_2394 BF89_2398 SM00322 K homology RNA-binding domain BF89_2401 SM01382 BF89_2401 BF89_2401 SM01383 BF89_2401 BF89_2405 SM01403 BF89_2405 BF89_2407 SM00838 Elongation factor G C-terminus BF89_2407 SM00889 Elongation factor G, domain IV BF89_241 SM00382 ATPases associated with a variety of cellular activities BF89_2411 SM00663 RNA polymerase I subunit A N-terminus BF89_2417 SM00649 Ribosomal protein L11/L12 BF89_2418 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF89_2420 SM00421 helix_turn_helix, Lux Regulon BF89_2422 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF89_2423 SM00535 Ribonuclease III family BF89_2424 SM00840 BF89_2424 BF89_2429 SM00670 Large family of predicted nucleotide-binding domains BF89_2431 SM00382 ATPases associated with a variety of cellular activities BF89_2432 SM00382 ATPases associated with a variety of cellular activities BF89_2432 SM01086 C-terminal, D2-small domain, of ClpB protein BF89_244 SM00882 Coenzyme A transferase BF89_2442 SM00530 Helix-turn-helix XRE-family like proteins BF89_2444 SM00905 Dihydroneopterin aldolase BF89_245 SM00882 Coenzyme A transferase BF89_2452 SM00382 ATPases associated with a variety of cellular activities BF89_2454 SM00977 TilS substrate C-terminal domain BF89_2455 SM00331 Sigma factor PP2C-like phosphatases BF89_2455 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF89_2458 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_2462 SM00363 S4 RNA-binding domain BF89_2465 SM00966 SpoVT / AbrB like domain BF89_2466 SM00487 DEAD-like helicases superfamily BF89_2466 SM00490 helicase superfamily c-terminal domain BF89_2466 SM00982 BF89_2466 BF89_2466 SM01058 CarD-like/TRCF domain BF89_2469 SM01400 BF89_2469 BF89_2478 SM00650 Ribosomal RNA adenine dimethylases BF89_2479 SM00493 BF89_2479 BF89_248 SM00387 Histidine kinase-like ATPases BF89_248 SM00388 His Kinase A (phosphoacceptor) domain BF89_2482 SM00966 SpoVT / AbrB like domain BF89_25 SM00646 BF89_25 BF89_2500 SM00493 BF89_2500 BF89_2502 SM00382 ATPases associated with a variety of cellular activities BF89_251 SM01091 Transporter associated domain BF89_2512 SM00936 Penicillin-binding protein 5, C-terminal domain BF89_2513 SM00116 Domain in cystathionine beta-synthase and other proteins. BF89_2513 SM01240 BF89_2513 BF89_2521 SM00434 DNA Topoisomerase IV BF89_2522 SM00387 Histidine kinase-like ATPases BF89_2522 SM00433 TopoisomeraseII BF89_2525 SM00480 DNA polymerase III beta subunit BF89_2526 SM00382 ATPases associated with a variety of cellular activities BF89_2526 SM00760 Bacterial dnaA protein helix-turn-helix domain BF89_2530 SM00393 Putative single-stranded nucleic acids-binding domain BF89_2530 SM01245 BF89_2530 BF89_2532 SM01228 BF89_2532 BF89_2534 SM00470 ParB-like nuclease domain BF89_2536 SM00470 ParB-like nuclease domain BF89_2545 SM00267 diguanylate cyclase BF89_2548 SM00788 Adenylosuccinate synthetase BF89_2553 SM00448 cheY-homologous receiver domain BF89_2553 SM00862 Transcriptional regulatory protein, C terminal BF89_2554 SM00091 PAS domain BF89_2554 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2554 SM00387 Histidine kinase-like ATPases BF89_2554 SM00388 His Kinase A (phosphoacceptor) domain BF89_2557 SM00849 Metallo-beta-lactamase superfamily BF89_2558 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF89_2563 SM01240 BF89_2563 BF89_2565 SM00487 DEAD-like helicases superfamily BF89_2565 SM00490 helicase superfamily c-terminal domain BF89_2576 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF89_2576 SM00387 Histidine kinase-like ATPases BF89_2577 SM00448 cheY-homologous receiver domain BF89_2577 SM00850 LytTr DNA-binding domain BF89_2589 SM00382 ATPases associated with a variety of cellular activities BF89_259 SM00382 ATPases associated with a variety of cellular activities BF89_2594 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_2601 SM00448 cheY-homologous receiver domain BF89_2601 SM00850 LytTr DNA-binding domain BF89_2604 SM00267 diguanylate cyclase BF89_2606 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF89_2608 SM00421 helix_turn_helix, Lux Regulon BF89_2608 SM00448 cheY-homologous receiver domain BF89_2610 SM00100 Cyclic nucleotide-monophosphate binding domain BF89_2617 SM00354 helix_turn _helix lactose operon repressor BF89_2619 SM00382 ATPases associated with a variety of cellular activities BF89_2621 SM00986 Uracil DNA glycosylase superfamily BF89_2621 SM00987 UreE urease accessory protein, C-terminal domain BF89_2630 SM00936 Penicillin-binding protein 5, C-terminal domain BF89_2639 SM00382 ATPases associated with a variety of cellular activities BF89_2641 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_2647 SM00422 helix_turn_helix, mercury resistance BF89_2655 SM00836 DALR anticodon binding domain BF89_2655 SM01016 Arginyl tRNA synthetase N terminal dom BF89_2664 SM00382 ATPases associated with a variety of cellular activities BF89_2666 SM00387 Histidine kinase-like ATPases BF89_2667 SM00421 helix_turn_helix, Lux Regulon BF89_2667 SM00448 cheY-homologous receiver domain BF89_2668 SM00530 Helix-turn-helix XRE-family like proteins BF89_2671 SM00052 Putative diguanylate phosphodiesterase BF89_2671 SM00267 diguanylate cyclase BF89_2673 SM00155 Phospholipase D. Active site motifs. BF89_2683 SM00448 cheY-homologous receiver domain BF89_2687 SM00357 Cold shock protein domain BF89_2687 SM00382 ATPases associated with a variety of cellular activities BF89_2687 SM00959 Rho termination factor, N-terminal domain BF89_2690 SM00937 BF89_2690 BF89_2697 SM00903 Flavin reductase like domain BF89_2700 SM00226 Low molecular weight phosphatase family BF89_2713 SM00382 ATPases associated with a variety of cellular activities BF89_2717 SM00052 Putative diguanylate phosphodiesterase BF89_2717 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF89_2717 SM00091 PAS domain BF89_2717 SM00267 diguanylate cyclase BF89_272 SM00829 Enoylreductase BF89_2734 SM00850 LytTr DNA-binding domain BF89_2735 SM00382 ATPases associated with a variety of cellular activities BF89_2747 SM00984 UDP binding domain BF89_2749 SM00287 Bacterial SH3 domain homologues BF89_2749 SM00382 ATPases associated with a variety of cellular activities BF89_275 SM00421 helix_turn_helix, Lux Regulon BF89_275 SM00448 cheY-homologous receiver domain BF89_2754 SM00448 cheY-homologous receiver domain BF89_2754 SM00862 Transcriptional regulatory protein, C terminal BF89_2755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2755 SM00387 Histidine kinase-like ATPases BF89_2755 SM00388 His Kinase A (phosphoacceptor) domain BF89_276 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF89_2760 SM00530 Helix-turn-helix XRE-family like proteins BF89_2762 SM00382 ATPases associated with a variety of cellular activities BF89_2771 SM00487 DEAD-like helicases superfamily BF89_2771 SM00490 helicase superfamily c-terminal domain BF89_2777 SM00287 Bacterial SH3 domain homologues BF89_2783 SM00287 Bacterial SH3 domain homologues BF89_2784 SM00287 Bacterial SH3 domain homologues BF89_2815 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF89_2816 SM00382 ATPases associated with a variety of cellular activities BF89_2819 SM00984 UDP binding domain BF89_2826 SM00487 DEAD-like helicases superfamily BF89_2827 SM00490 helicase superfamily c-terminal domain BF89_2829 SM00357 Cold shock protein domain BF89_2831 SM00957 SecA DEAD-like domain BF89_2831 SM00958 SecA preprotein cross-linking domain BF89_2832 SM00937 BF89_2832 BF89_2834 SM00382 ATPases associated with a variety of cellular activities BF89_2836 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF89_2836 SM00245 tail specific protease BF89_2838 SM00382 ATPases associated with a variety of cellular activities BF89_2840 SM00382 ATPases associated with a variety of cellular activities BF89_2842 SM00422 helix_turn_helix, mercury resistance BF89_2845 SM00530 Helix-turn-helix XRE-family like proteins BF89_2848 SM00422 helix_turn_helix, mercury resistance BF89_2852 SM00487 DEAD-like helicases superfamily BF89_2852 SM00490 helicase superfamily c-terminal domain BF89_2860 SM00028 Tetratricopeptide repeats BF89_2880 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF89_2884 SM01192 BF89_2884 BF89_2884 SM01193 BF89_2884 BF89_2911 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_2911 SM00357 Cold shock protein domain BF89_2911 SM00955 BF89_2911 BF89_2913 SM00448 cheY-homologous receiver domain BF89_2913 SM00862 Transcriptional regulatory protein, C terminal BF89_2917 SM00382 ATPases associated with a variety of cellular activities BF89_2927 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_2928 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF89_2930 SM00363 S4 RNA-binding domain BF89_2937 SM01276 BF89_2937 BF89_2957 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_2961 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_2961 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2965 SM00387 Histidine kinase-like ATPases BF89_2965 SM00388 His Kinase A (phosphoacceptor) domain BF89_2966 SM00448 cheY-homologous receiver domain BF89_2966 SM00862 Transcriptional regulatory protein, C terminal BF89_297 SM00563 Phosphate acyltransferases BF89_2971 SM00530 Helix-turn-helix XRE-family like proteins BF89_2985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_2985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_2994 SM00849 Metallo-beta-lactamase superfamily BF89_30 SM00530 Helix-turn-helix XRE-family like proteins BF89_3011 SM00493 BF89_3011 BF89_3014 SM00382 ATPases associated with a variety of cellular activities BF89_3014 SM00930 BF89_3014 BF89_3018 SM00382 ATPases associated with a variety of cellular activities BF89_3029 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_3031 SM00855 Phosphoglycerate mutase family BF89_3034 SM00422 helix_turn_helix, mercury resistance BF89_3041 SM00420 helix_turn_helix, Deoxyribose operon repressor BF89_3054 SM00860 SMI1 / KNR4 family BF89_3059 SM00382 ATPases associated with a variety of cellular activities BF89_3069 SM00871 Bacterial transcription activator, effector binding domain BF89_3088 SM00479 BF89_3088 BF89_3089 SM01298 BF89_3089 BF89_309 SM00382 ATPases associated with a variety of cellular activities BF89_3096 SM00344 helix_turn_helix ASNC type BF89_3098 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_3131 SM00642 Alpha-amylase domain BF89_3139 SM00357 Cold shock protein domain BF89_3147 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF89_3148 SM00448 cheY-homologous receiver domain BF89_3148 SM00862 Transcriptional regulatory protein, C terminal BF89_3149 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_3149 SM00387 Histidine kinase-like ATPases BF89_3149 SM00388 His Kinase A (phosphoacceptor) domain BF89_3157 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_3157 SM00866 BF89_3157 BF89_3162 SM00382 ATPases associated with a variety of cellular activities BF89_3165 SM00387 Histidine kinase-like ATPases BF89_3166 SM00448 cheY-homologous receiver domain BF89_3166 SM00862 Transcriptional regulatory protein, C terminal BF89_3167 SM00342 helix_turn_helix, arabinose operon control protein BF89_3167 SM00871 Bacterial transcription activator, effector binding domain BF89_3168 SM00382 ATPases associated with a variety of cellular activities BF89_3178 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF89_3184 SM00448 cheY-homologous receiver domain BF89_3184 SM00862 Transcriptional regulatory protein, C terminal BF89_3185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_3185 SM00387 Histidine kinase-like ATPases BF89_3185 SM00388 His Kinase A (phosphoacceptor) domain BF89_3187 SM00899 BF89_3187 BF89_3199 SM00894 Excalibur calcium-binding domain BF89_3203 SM01234 BF89_3203 BF89_3204 SM00947 Carbonic anhydrase BF89_3216 SM00382 ATPases associated with a variety of cellular activities BF89_3223 SM00387 Histidine kinase-like ATPases BF89_3223 SM00388 His Kinase A (phosphoacceptor) domain BF89_3224 SM00387 Histidine kinase-like ATPases BF89_3235 SM00852 Probable molybdopterin binding domain BF89_3238 SM00014 Acid phosphatase homologues BF89_3246 SM00382 ATPases associated with a variety of cellular activities BF89_3248 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_325 SM00387 Histidine kinase-like ATPases BF89_325 SM00388 His Kinase A (phosphoacceptor) domain BF89_3252 SM00382 ATPases associated with a variety of cellular activities BF89_326 SM00448 cheY-homologous receiver domain BF89_326 SM00862 Transcriptional regulatory protein, C terminal BF89_3268 SM00450 Rhodanese Homology Domain BF89_3272 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_3275 SM00852 Probable molybdopterin binding domain BF89_3282 SM01058 CarD-like/TRCF domain BF89_3287 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_3291 SM00363 S4 RNA-binding domain BF89_3292 SM00420 helix_turn_helix, Deoxyribose operon repressor BF89_3295 SM00642 Alpha-amylase domain BF89_3299 SM00849 Metallo-beta-lactamase superfamily BF89_3307 SM00843 BF89_3307 BF89_3318 SM00354 helix_turn _helix lactose operon repressor BF89_3325 SM00248 ankyrin repeats BF89_3326 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_3326 SM00387 Histidine kinase-like ATPases BF89_3326 SM00388 His Kinase A (phosphoacceptor) domain BF89_3327 SM00448 cheY-homologous receiver domain BF89_3327 SM00862 Transcriptional regulatory protein, C terminal BF89_3330 SM00116 Domain in cystathionine beta-synthase and other proteins. BF89_3336 SM00363 S4 RNA-binding domain BF89_3339 SM00363 S4 RNA-binding domain BF89_3339 SM01390 BF89_3339 BF89_3348 SM00981 BF89_3348 BF89_337 SM00857 Resolvase, N terminal domain BF89_3372 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF89_3372 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF89_3374 SM00530 Helix-turn-helix XRE-family like proteins BF89_3385 SM00849 Metallo-beta-lactamase superfamily BF89_3387 SM00116 Domain in cystathionine beta-synthase and other proteins. BF89_3394 SM00481 DNA polymerase alpha chain like domain BF89_3395 SM00919 Malic enzyme, NAD binding domain BF89_3395 SM01274 BF89_3395 BF89_3396 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_3405 SM01329 BF89_3405 BF89_3409 SM00448 cheY-homologous receiver domain BF89_3409 SM00862 Transcriptional regulatory protein, C terminal BF89_3410 SM00091 PAS domain BF89_3410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_3410 SM00387 Histidine kinase-like ATPases BF89_3410 SM00388 His Kinase A (phosphoacceptor) domain BF89_3411 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF89_3411 SM00474 3'-5' exonuclease BF89_3411 SM00475 5'-3' exonuclease BF89_3411 SM00482 DNA polymerase A domain BF89_3412 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF89_3412 SM01232 BF89_3412 BF89_3415 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF89_3419 SM00382 ATPases associated with a variety of cellular activities BF89_3421 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF89_3436 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF89_3438 SM00873 B3/4 domain BF89_3438 SM00874 tRNA synthetase B5 domain BF89_3438 SM00896 Ferredoxin-fold anticodon binding domain BF89_344 SM00028 Tetratricopeptide repeats BF89_3446 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF89_3446 SM00481 DNA polymerase alpha chain like domain BF89_3446 SM00483 DNA polymerase X family BF89_3447 SM00463 Small MutS-related domain BF89_3447 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF89_3447 SM00534 ATPase domain of DNA mismatch repair MUTS family BF89_3449 SM00363 S4 RNA-binding domain BF89_3451 SM00725 NEAr Transporter domain BF89_3452 SM00725 NEAr Transporter domain BF89_3453 SM00725 NEAr Transporter domain BF89_3456 SM00382 ATPases associated with a variety of cellular activities BF89_346 SM00382 ATPases associated with a variety of cellular activities BF89_3460 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF89_3463 SM00448 cheY-homologous receiver domain BF89_3463 SM00862 Transcriptional regulatory protein, C terminal BF89_3464 SM00387 Histidine kinase-like ATPases BF89_3464 SM00388 His Kinase A (phosphoacceptor) domain BF89_3465 SM00382 ATPases associated with a variety of cellular activities BF89_3478 SM00893 Electron transfer flavoprotein domain BF89_3479 SM00893 Electron transfer flavoprotein domain BF89_3481 SM00465 GIY-YIG type nucleases (URI domain) BF89_349 SM00327 von Willebrand factor (vWF) type A domain BF89_3492 SM00382 ATPases associated with a variety of cellular activities BF89_3497 SM00530 Helix-turn-helix XRE-family like proteins BF89_3501 SM00342 helix_turn_helix, arabinose operon control protein BF89_3501 SM00448 cheY-homologous receiver domain BF89_3503 SM00382 ATPases associated with a variety of cellular activities BF89_3504 SM00382 ATPases associated with a variety of cellular activities BF89_3512 SM00421 helix_turn_helix, Lux Regulon BF89_3519 SM00909 Sporulation and spore germination BF89_3531 SM00382 ATPases associated with a variety of cellular activities BF89_3531 SM00994 ClpX C4-type zinc finger BF89_3531 SM01086 C-terminal, D2-small domain, of ClpB protein BF89_3532 SM00382 ATPases associated with a variety of cellular activities BF89_3533 SM00382 ATPases associated with a variety of cellular activities BF89_3533 SM00464 Found in ATP-dependent protease La (LON) BF89_3536 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_3541 SM01004 Delta-aminolevulinic acid dehydratase BF89_3543 SM00257 Lysin motif BF89_355 SM00028 Tetratricopeptide repeats BF89_356 SM00028 Tetratricopeptide repeats BF89_3561 SM01317 BF89_3561 BF89_3563 SM00448 cheY-homologous receiver domain BF89_3563 SM00862 Transcriptional regulatory protein, C terminal BF89_3565 SM00387 Histidine kinase-like ATPases BF89_3566 SM00382 ATPases associated with a variety of cellular activities BF89_3576 SM00257 Lysin motif BF89_3579 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_3584 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF89_3585 SM00382 ATPases associated with a variety of cellular activities BF89_3589 SM01323 BF89_3589 BF89_3598 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_3598 SM00954 Region found in RelA / SpoT proteins BF89_360 SM00836 DALR anticodon binding domain BF89_360 SM01016 Arginyl tRNA synthetase N terminal dom BF89_3605 SM00382 ATPases associated with a variety of cellular activities BF89_3609 SM00028 Tetratricopeptide repeats BF89_3616 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF89_3618 SM00732 Likely ribonuclease with RNase H fold. BF89_3637 SM00382 ATPases associated with a variety of cellular activities BF89_364 SM00567 E-Z type HEAT repeats BF89_364 SM00932 Scaffold protein Nfu/NifU N terminal BF89_3642 SM00530 Helix-turn-helix XRE-family like proteins BF89_3651 SM00855 Phosphoglycerate mutase family BF89_3656 SM00098 Alkaline phosphatase homologues BF89_3658 SM00954 Region found in RelA / SpoT proteins BF89_3668 SM01103 BF89_3668 BF89_3670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_3674 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF89_3676 SM00849 Metallo-beta-lactamase superfamily BF89_3682 SM00838 Elongation factor G C-terminus BF89_3684 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_3688 SM00271 DnaJ molecular chaperone homology domain BF89_3691 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_3697 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_370 SM00382 ATPases associated with a variety of cellular activities BF89_3704 SM00116 Domain in cystathionine beta-synthase and other proteins. BF89_3706 SM00400 zinc finger BF89_3706 SM00493 BF89_3706 BF89_3706 SM00766 DNA primase DnaG DnaB-binding BF89_371 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_3713 SM00487 DEAD-like helicases superfamily BF89_3713 SM00490 helicase superfamily c-terminal domain BF89_3714 SM00518 AP endonuclease family 2 BF89_3717 SM00382 ATPases associated with a variety of cellular activities BF89_3730 SM00382 ATPases associated with a variety of cellular activities BF89_3738 SM00849 Metallo-beta-lactamase superfamily BF89_3740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_3746 SM01018 B12 binding domain BF89_3757 SM00382 ATPases associated with a variety of cellular activities BF89_3764 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF89_3771 SM00487 DEAD-like helicases superfamily BF89_3771 SM00490 helicase superfamily c-terminal domain BF89_3777 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_3778 SM00382 ATPases associated with a variety of cellular activities BF89_3788 SM00354 helix_turn _helix lactose operon repressor BF89_3789 SM00450 Rhodanese Homology Domain BF89_3793 SM00529 Helix-turn-helix diphteria tox regulatory element BF89_3800 SM00841 Elongation factor P, C-terminal BF89_3800 SM01185 BF89_3800 BF89_3804 SM00382 ATPases associated with a variety of cellular activities BF89_3814 SM00878 Biotin carboxylase C-terminal domain BF89_3821 SM00861 Transketolase, pyrimidine binding domain BF89_3822 SM00363 S4 RNA-binding domain BF89_3825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF89_3826 SM00448 cheY-homologous receiver domain BF89_383 SM00894 Excalibur calcium-binding domain BF89_3831 SM00091 PAS domain BF89_3831 SM00382 ATPases associated with a variety of cellular activities BF89_3833 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF89_3837 SM00861 Transketolase, pyrimidine binding domain BF89_3843 SM00062 Bacterial periplasmic substrate-binding proteins BF89_3843 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF89_3845 SM00382 ATPases associated with a variety of cellular activities BF89_3854 SM00849 Metallo-beta-lactamase superfamily BF89_3858 SM00849 Metallo-beta-lactamase superfamily BF89_3861 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF89_3868 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_3878 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_3878 SM00876 Biotin and Thiamin Synthesis associated domain BF89_3884 SM00704 CDGSH-type zinc finger. Function unknown. BF89_3888 SM00354 helix_turn _helix lactose operon repressor BF89_3907 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF89_3911 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_3914 SM00382 ATPases associated with a variety of cellular activities BF89_3915 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_3916 SM00936 Penicillin-binding protein 5, C-terminal domain BF89_3918 SM00387 Histidine kinase-like ATPases BF89_3937 SM00849 Metallo-beta-lactamase superfamily BF89_3940 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_3940 SM00866 BF89_3940 BF89_3942 SM01061 CAT RNA binding domain BF89_3949 SM00267 diguanylate cyclase BF89_3955 SM01007 Class II Aldolase and Adducin N-terminal domain BF89_396 SM00852 Probable molybdopterin binding domain BF89_3972 SM00382 ATPases associated with a variety of cellular activities BF89_3979 SM00382 ATPases associated with a variety of cellular activities BF89_398 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_3980 SM00642 Alpha-amylase domain BF89_3981 SM00642 Alpha-amylase domain BF89_3985 SM00354 helix_turn _helix lactose operon repressor BF89_3988 SM00387 Histidine kinase-like ATPases BF89_3988 SM00388 His Kinase A (phosphoacceptor) domain BF89_399 SM00100 Cyclic nucleotide-monophosphate binding domain BF89_399 SM00419 helix_turn_helix, cAMP Regulatory protein BF89_3997 SM00267 diguanylate cyclase BF89_4006 SM00052 Putative diguanylate phosphodiesterase BF89_401 SM00382 ATPases associated with a variety of cellular activities BF89_4019 SM00849 Metallo-beta-lactamase superfamily BF89_402 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_4025 SM00861 Transketolase, pyrimidine binding domain BF89_4041 SM00838 Elongation factor G C-terminus BF89_4046 SM00670 Large family of predicted nucleotide-binding domains BF89_4050 SM00878 Biotin carboxylase C-terminal domain BF89_406 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF89_4063 SM00855 Phosphoglycerate mutase family BF89_4072 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF89_4078 SM00530 Helix-turn-helix XRE-family like proteins BF89_4082 SM00530 Helix-turn-helix XRE-family like proteins BF89_4083 SM00530 Helix-turn-helix XRE-family like proteins BF89_4087 SM00382 ATPases associated with a variety of cellular activities BF89_4102 SM00530 Helix-turn-helix XRE-family like proteins BF89_411 SM00460 Transglutaminase/protease-like homologues BF89_4111 SM00507 HNH nucleases BF89_4133 SM00644 BF89_4133 BF89_4136 SM00530 Helix-turn-helix XRE-family like proteins BF89_414 SM00849 Metallo-beta-lactamase superfamily BF89_4145 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF89_4151 SM00740 BF89_4151 BF89_4152 SM00740 BF89_4152 BF89_4160 SM00842 Cell division protein FtsA BF89_4161 SM00864 Tubulin/FtsZ family, GTPase domain BF89_4161 SM00865 Tubulin/FtsZ family, C-terminal domain BF89_4170 SM00363 S4 RNA-binding domain BF89_4175 SM00363 S4 RNA-binding domain BF89_418 SM00829 Enoylreductase BF89_4180 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF89_4181 SM00851 MGS-like domain BF89_4181 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF89_4181 SM01209 BF89_4181 BF89_4184 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF89_4193 SM00831 Cation transporter/ATPase, N-terminus BF89_4196 SM00072 Guanylate kinase homologues. BF89_4197 SM01409 BF89_4197 BF89_4199 SM00487 DEAD-like helicases superfamily BF89_4199 SM00490 helicase superfamily c-terminal domain BF89_4204 SM00331 Sigma factor PP2C-like phosphatases BF89_4204 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF89_4205 SM00220 Serine/Threonine protein kinases, catalytic domain BF89_4205 SM00740 BF89_4205 BF89_4208 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF89_4211 SM01120 BF89_4211 BF89_4211 SM01121 BF89_4211 BF89_4212 SM00487 DEAD-like helicases superfamily BF89_4212 SM00490 helicase superfamily c-terminal domain BF89_4215 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF89_4216 SM00822 BF89_4216 BF89_4218 SM00358 Double-stranded RNA binding motif BF89_4218 SM00535 Ribonuclease III family BF89_4219 SM00968 SMC proteins Flexible Hinge Domain BF89_422 SM00487 DEAD-like helicases superfamily BF89_422 SM00490 helicase superfamily c-terminal domain BF89_4220 SM00382 ATPases associated with a variety of cellular activities BF89_4220 SM00962 SRP54-type protein, GTPase domain BF89_4220 SM00963 SRP54-type protein, helical bundle domain BF89_4222 SM00382 ATPases associated with a variety of cellular activities BF89_4222 SM00962 SRP54-type protein, GTPase domain BF89_4222 SM00963 SRP54-type protein, helical bundle domain BF89_4232 SM00881 CoA binding domain BF89_4235 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF89_4235 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF89_4235 SM00493 BF89_4235 BF89_4239 SM00382 ATPases associated with a variety of cellular activities BF89_4239 SM01086 C-terminal, D2-small domain, of ClpB protein BF89_4248 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF89_4250 SM00479 BF89_4250 BF89_4250 SM00481 DNA polymerase alpha chain like domain BF89_4252 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_4252 SM00322 K homology RNA-binding domain BF89_4259 SM00904 Riboflavin kinase BF89_4260 SM01387 BF89_4260 BF89_4261 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_4261 SM00322 K homology RNA-binding domain BF89_4267 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF89_4269 SM01130 BF89_4269 BF89_4270 SM00849 Metallo-beta-lactamase superfamily BF89_4273 SM00382 ATPases associated with a variety of cellular activities BF89_4273 SM00843 BF89_4273 BF89_4274 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_4274 SM00866 BF89_4274 BF89_4276 SM00382 ATPases associated with a variety of cellular activities BF89_4287 SM00852 Probable molybdopterin binding domain BF89_4288 SM00382 ATPases associated with a variety of cellular activities BF89_4290 SM00322 K homology RNA-binding domain BF89_4290 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF89_4296 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_4299 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF89_4299 SM00534 ATPase domain of DNA mismatch repair MUTS family BF89_4300 SM00853 MutL C terminal dimerisation domain BF89_4300 SM01340 BF89_4300 BF89_4301 SM00382 ATPases associated with a variety of cellular activities BF89_4304 SM00448 cheY-homologous receiver domain BF89_4304 SM00862 Transcriptional regulatory protein, C terminal BF89_4305 SM00387 Histidine kinase-like ATPases BF89_4305 SM00388 His Kinase A (phosphoacceptor) domain BF89_4311 SM00257 Lysin motif BF89_4313 SM00148 Phospholipase C, catalytic domain (part); domain X BF89_4317 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_4322 SM00052 Putative diguanylate phosphodiesterase BF89_4323 SM00091 PAS domain BF89_4323 SM00267 diguanylate cyclase BF89_4330 SM00478 endonuclease III BF89_4332 SM00342 helix_turn_helix, arabinose operon control protein BF89_4339 SM00382 ATPases associated with a variety of cellular activities BF89_4345 SM00411 bacterial (prokaryotic) histone like domain BF89_4349 SM00636 BF89_4349 BF89_4356 SM00420 helix_turn_helix, Deoxyribose operon repressor BF89_4356 SM01134 BF89_4356 BF89_4359 SM00287 Bacterial SH3 domain homologues BF89_4365 SM00382 ATPases associated with a variety of cellular activities BF89_4370 SM00422 helix_turn_helix, mercury resistance BF89_4371 SM01230 BF89_4371 BF89_4376 SM00530 Helix-turn-helix XRE-family like proteins BF89_4377 SM00530 Helix-turn-helix XRE-family like proteins BF89_4387 SM00382 ATPases associated with a variety of cellular activities BF89_4402 SM00530 Helix-turn-helix XRE-family like proteins BF89_4432 SM00287 Bacterial SH3 domain homologues BF89_4432 SM00644 BF89_4432 BF89_4438 SM00028 Tetratricopeptide repeats BF89_4444 SM00857 Resolvase, N terminal domain BF89_4448 SM00062 Bacterial periplasmic substrate-binding proteins BF89_4449 SM00382 ATPases associated with a variety of cellular activities BF89_4453 SM00861 Transketolase, pyrimidine binding domain BF89_4456 SM00382 ATPases associated with a variety of cellular activities BF89_4457 SM00382 ATPases associated with a variety of cellular activities BF89_446 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_4460 SM00644 BF89_4460 BF89_4487 SM01058 CarD-like/TRCF domain BF89_4493 SM00091 PAS domain BF89_4493 SM00387 Histidine kinase-like ATPases BF89_4493 SM00388 His Kinase A (phosphoacceptor) domain BF89_4496 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF89_4497 SM00644 BF89_4497 BF89_4497 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF89_4510 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF89_4518 SM00382 ATPases associated with a variety of cellular activities BF89_452 SM01005 Alanine racemase, C-terminal domain BF89_4521 SM00479 BF89_4521 BF89_4525 SM00257 Lysin motif BF89_4525 SM00636 BF89_4525 BF89_4528 SM01207 BF89_4528 BF89_4531 SM00448 cheY-homologous receiver domain BF89_4531 SM00862 Transcriptional regulatory protein, C terminal BF89_4532 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF89_4533 SM00881 CoA binding domain BF89_4534 SM00387 Histidine kinase-like ATPases BF89_4534 SM00433 TopoisomeraseII BF89_4535 SM00434 DNA Topoisomerase IV BF89_4538 SM00382 ATPases associated with a variety of cellular activities BF89_455 SM00855 Phosphoglycerate mutase family BF89_4558 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF89_4558 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF89_456 SM00244 prohibitin homologues BF89_4563 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_4566 SM00852 Probable molybdopterin binding domain BF89_4589 SM01022 BF89_4589 BF89_4594 SM00357 Cold shock protein domain BF89_4595 SM00479 BF89_4595 BF89_46 SM00354 helix_turn _helix lactose operon repressor BF89_4604 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF89_4620 SM00028 Tetratricopeptide repeats BF89_4622 SM00829 Enoylreductase BF89_4623 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_4637 SM00642 Alpha-amylase domain BF89_4639 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF89_4639 SM00534 ATPase domain of DNA mismatch repair MUTS family BF89_4641 SM00855 Phosphoglycerate mutase family BF89_4642 SM00829 Enoylreductase BF89_4667 SM00829 Enoylreductase BF89_4668 SM00849 Metallo-beta-lactamase superfamily BF89_4681 SM00641 Glycosyl hydrolases family 25 BF89_4682 SM00849 Metallo-beta-lactamase superfamily BF89_4689 SM00382 ATPases associated with a variety of cellular activities BF89_4693 SM00871 Bacterial transcription activator, effector binding domain BF89_47 SM00014 Acid phosphatase homologues BF89_4701 SM00636 BF89_4701 BF89_4702 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_4703 SM00248 ankyrin repeats BF89_471 SM01091 Transporter associated domain BF89_4716 SM00849 Metallo-beta-lactamase superfamily BF89_4723 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_4723 SM00866 BF89_4723 BF89_4729 SM00914 BF89_4729 BF89_4738 SM01276 BF89_4738 BF89_4741 SM00829 Enoylreductase BF89_4744 SM00829 Enoylreductase BF89_4747 SM00861 Transketolase, pyrimidine binding domain BF89_4748 SM01350 BF89_4748 BF89_4756 SM00422 helix_turn_helix, mercury resistance BF89_4757 SM01091 Transporter associated domain BF89_476 SM00155 Phospholipase D. Active site motifs. BF89_4774 SM00382 ATPases associated with a variety of cellular activities BF89_4776 SM01266 BF89_4776 BF89_4788 SM00530 Helix-turn-helix XRE-family like proteins BF89_4791 SM00382 ATPases associated with a variety of cellular activities BF89_4803 SM01207 BF89_4803 BF89_4804 SM00530 Helix-turn-helix XRE-family like proteins BF89_4813 SM00382 ATPases associated with a variety of cellular activities BF89_4827 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_4829 SM00382 ATPases associated with a variety of cellular activities BF89_4834 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_4844 SM00287 Bacterial SH3 domain homologues BF89_4847 SM00342 helix_turn_helix, arabinose operon control protein BF89_4859 SM00344 helix_turn_helix ASNC type BF89_486 SM00855 Phosphoglycerate mutase family BF89_4868 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_4874 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF89_4879 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_4879 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_4879 SM00319 Homologues of the ligand binding domain of Tar BF89_4886 SM00028 Tetratricopeptide repeats BF89_4887 SM00354 helix_turn _helix lactose operon repressor BF89_4906 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_4908 SM00448 cheY-homologous receiver domain BF89_4908 SM00862 Transcriptional regulatory protein, C terminal BF89_4909 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_4909 SM00387 Histidine kinase-like ATPases BF89_4909 SM00388 His Kinase A (phosphoacceptor) domain BF89_4911 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_4913 SM00382 ATPases associated with a variety of cellular activities BF89_4923 SM00530 Helix-turn-helix XRE-family like proteins BF89_4934 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_4934 SM00387 Histidine kinase-like ATPases BF89_4934 SM00388 His Kinase A (phosphoacceptor) domain BF89_4935 SM00448 cheY-homologous receiver domain BF89_4935 SM00862 Transcriptional regulatory protein, C terminal BF89_4942 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_4947 SM00342 helix_turn_helix, arabinose operon control protein BF89_4954 SM00344 helix_turn_helix ASNC type BF89_4958 SM00028 Tetratricopeptide repeats BF89_4961 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_4964 SM00226 Low molecular weight phosphatase family BF89_4969 SM00382 ATPases associated with a variety of cellular activities BF89_4995 SM01060 BF89_4995 BF89_5 SM00878 Biotin carboxylase C-terminal domain BF89_5005 SM00387 Histidine kinase-like ATPases BF89_5006 SM00448 cheY-homologous receiver domain BF89_5011 SM00919 Malic enzyme, NAD binding domain BF89_5011 SM01274 BF89_5011 BF89_5018 SM00530 Helix-turn-helix XRE-family like proteins BF89_5019 SM00870 BF89_5019 BF89_5037 SM00849 Metallo-beta-lactamase superfamily BF89_5050 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_5054 SM00346 helix_turn_helix isocitrate lyase regulation BF89_5055 SM00796 Allophanate hydrolase subunit 1 BF89_5056 SM00797 Allophanate hydrolase subunit 2 BF89_507 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF89_5084 SM00448 cheY-homologous receiver domain BF89_5084 SM00862 Transcriptional regulatory protein, C terminal BF89_5085 SM00387 Histidine kinase-like ATPases BF89_5085 SM00388 His Kinase A (phosphoacceptor) domain BF89_5089 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_5094 SM00342 helix_turn_helix, arabinose operon control protein BF89_5094 SM00871 Bacterial transcription activator, effector binding domain BF89_5099 SM00382 ATPases associated with a variety of cellular activities BF89_5101 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_5102 SM00382 ATPases associated with a variety of cellular activities BF89_5107 SM00889 Elongation factor G, domain IV BF89_5108 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_5119 SM01060 BF89_5119 BF89_5140 SM00850 LytTr DNA-binding domain BF89_5145 SM00530 Helix-turn-helix XRE-family like proteins BF89_5147 SM00098 Alkaline phosphatase homologues BF89_5151 SM00346 helix_turn_helix isocitrate lyase regulation BF89_5154 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF89_5158 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_5164 SM01133 BF89_5164 BF89_5168 SM00382 ATPases associated with a variety of cellular activities BF89_5179 SM00287 Bacterial SH3 domain homologues BF89_5187 SM00830 Chorismate mutase type II BF89_519 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF89_519 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_5197 SM00382 ATPases associated with a variety of cellular activities BF89_5215 SM00028 Tetratricopeptide repeats BF89_5222 SM00382 ATPases associated with a variety of cellular activities BF89_5223 SM00062 Bacterial periplasmic substrate-binding proteins BF89_5234 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_5236 SM00382 ATPases associated with a variety of cellular activities BF89_526 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_5275 SM00448 cheY-homologous receiver domain BF89_5275 SM00862 Transcriptional regulatory protein, C terminal BF89_5276 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_5276 SM00387 Histidine kinase-like ATPases BF89_5276 SM00388 His Kinase A (phosphoacceptor) domain BF89_5277 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF89_528 SM00966 SpoVT / AbrB like domain BF89_5285 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF89_5298 SM00091 PAS domain BF89_5298 SM00382 ATPases associated with a variety of cellular activities BF89_5302 SM01130 BF89_5302 BF89_5308 SM01131 BF89_5308 BF89_5316 SM00341 Helicase and RNase D C-terminal BF89_5316 SM00487 DEAD-like helicases superfamily BF89_5316 SM00490 helicase superfamily c-terminal domain BF89_5316 SM00956 BF89_5316 BF89_533 SM00460 Transglutaminase/protease-like homologues BF89_5330 SM00849 Metallo-beta-lactamase superfamily BF89_5340 SM00060 Fibronectin type 3 domain BF89_5340 SM00495 Chitin-binding domain type 3 BF89_5347 SM00116 Domain in cystathionine beta-synthase and other proteins. BF89_5347 SM00382 ATPases associated with a variety of cellular activities BF89_5358 SM00861 Transketolase, pyrimidine binding domain BF89_5368 SM00420 helix_turn_helix, Deoxyribose operon repressor BF89_5368 SM01134 BF89_5368 BF89_5372 SM00382 ATPases associated with a variety of cellular activities BF89_5395 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_5399 SM00871 Bacterial transcription activator, effector binding domain BF89_5403 SM00642 Alpha-amylase domain BF89_5424 SM00465 GIY-YIG type nucleases (URI domain) BF89_5446 SM00480 DNA polymerase III beta subunit BF89_5457 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_5466 SM00422 helix_turn_helix, mercury resistance BF89_5480 SM00740 BF89_5480 BF89_5481 SM00829 Enoylreductase BF89_5485 SM00387 Histidine kinase-like ATPases BF89_5485 SM00388 His Kinase A (phosphoacceptor) domain BF89_5488 SM00382 ATPases associated with a variety of cellular activities BF89_5493 SM00091 PAS domain BF89_5493 SM00387 Histidine kinase-like ATPases BF89_5493 SM00388 His Kinase A (phosphoacceptor) domain BF89_551 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_551 SM00387 Histidine kinase-like ATPases BF89_551 SM00388 His Kinase A (phosphoacceptor) domain BF89_5519 SM01209 BF89_5519 BF89_552 SM00448 cheY-homologous receiver domain BF89_552 SM00862 Transcriptional regulatory protein, C terminal BF89_5520 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_5527 SM00382 ATPases associated with a variety of cellular activities BF89_5530 SM00382 ATPases associated with a variety of cellular activities BF89_5532 SM00387 Histidine kinase-like ATPases BF89_5534 SM00448 cheY-homologous receiver domain BF89_5534 SM00862 Transcriptional regulatory protein, C terminal BF89_5545 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_5548 SM00342 helix_turn_helix, arabinose operon control protein BF89_5553 SM00422 helix_turn_helix, mercury resistance BF89_5553 SM00871 Bacterial transcription activator, effector binding domain BF89_5557 SM00382 ATPases associated with a variety of cellular activities BF89_5570 SM00448 cheY-homologous receiver domain BF89_5570 SM00862 Transcriptional regulatory protein, C terminal BF89_5571 SM00387 Histidine kinase-like ATPases BF89_5571 SM00388 His Kinase A (phosphoacceptor) domain BF89_5589 SM00487 DEAD-like helicases superfamily BF89_5590 SM00507 HNH nucleases BF89_5605 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF89_5605 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF89_5605 SM00493 BF89_5605 BF89_5607 SM00318 Staphylococcal nuclease homologues BF89_5611 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_5614 SM00028 Tetratricopeptide repeats BF89_5620 SM00954 Region found in RelA / SpoT proteins BF89_5629 SM00860 SMI1 / KNR4 family BF89_5648 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_5649 SM00758 BF89_5649 BF89_5654 SM00857 Resolvase, N terminal domain BF89_5662 SM01207 BF89_5662 BF89_567 SM00387 Histidine kinase-like ATPases BF89_567 SM00388 His Kinase A (phosphoacceptor) domain BF89_5681 SM00984 UDP binding domain BF89_5685 SM00014 Acid phosphatase homologues BF89_569 SM00448 cheY-homologous receiver domain BF89_569 SM00862 Transcriptional regulatory protein, C terminal BF89_5690 SM00725 NEAr Transporter domain BF89_570 SM00382 ATPases associated with a variety of cellular activities BF89_573 SM00287 Bacterial SH3 domain homologues BF89_5738 SM00864 Tubulin/FtsZ family, GTPase domain BF89_5741 SM00843 BF89_5741 BF89_5744 SM00530 Helix-turn-helix XRE-family like proteins BF89_5768 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain BF89_579 SM00382 ATPases associated with a variety of cellular activities BF89_580 SM00382 ATPases associated with a variety of cellular activities BF89_5816 SM00646 BF89_5816 BF89_5828 SM00014 Acid phosphatase homologues BF89_5835 SM00854 Bacterial capsule synthesis protein PGA_cap BF89_5839 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF89_584 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_5870 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF89_5871 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF89_5871 SM00493 BF89_5871 BF89_591 SM00382 ATPases associated with a variety of cellular activities BF89_592 SM00382 ATPases associated with a variety of cellular activities BF89_599 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF89_619 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF89_619 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF89_619 SM00493 BF89_619 BF89_62 SM00855 Phosphoglycerate mutase family BF89_621 SM00287 Bacterial SH3 domain homologues BF89_623 SM01011 Aminopeptidase P, N-terminal domain BF89_629 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF89_63 SM00347 helix_turn_helix multiple antibiotic resistance protein BF89_631 SM01133 BF89_631 BF89_642 SM00450 Rhodanese Homology Domain BF89_645 SM00387 Histidine kinase-like ATPases BF89_645 SM00388 His Kinase A (phosphoacceptor) domain BF89_646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF89_647 SM00448 cheY-homologous receiver domain BF89_647 SM00862 Transcriptional regulatory protein, C terminal BF89_649 SM00729 Elongator protein 3, MiaB family, Radical SAM BF89_659 SM00850 LytTr DNA-binding domain BF89_666 SM00854 Bacterial capsule synthesis protein PGA_cap BF89_667 SM00854 Bacterial capsule synthesis protein PGA_cap BF89_68 SM00382 ATPases associated with a variety of cellular activities BF89_703 SM00047 Lysozyme subfamily 2 BF89_704 SM00646 BF89_704 BF89_717 SM00487 DEAD-like helicases superfamily BF89_717 SM00490 helicase superfamily c-terminal domain BF89_718 SM00448 cheY-homologous receiver domain BF89_719 SM00387 Histidine kinase-like ATPases BF89_720 SM00919 Malic enzyme, NAD binding domain BF89_720 SM01274 BF89_720 BF89_724 SM00155 Phospholipase D. Active site motifs. BF89_727 SM00382 ATPases associated with a variety of cellular activities BF89_729 SM00421 helix_turn_helix, Lux Regulon BF89_729 SM00448 cheY-homologous receiver domain BF89_738 SM00530 Helix-turn-helix XRE-family like proteins BF89_75 SM00487 DEAD-like helicases superfamily BF89_75 SM00490 helicase superfamily c-terminal domain BF89_756 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF89_758 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF89_758 SM00895 BF89_758 BF89_771 SM00855 Phosphoglycerate mutase family BF89_774 SM00835 Cupin BF89_778 SM00849 Metallo-beta-lactamase superfamily BF89_778 SM01027 Beta-Casp domain BF89_78 SM00849 Metallo-beta-lactamase superfamily BF89_781 SM00382 ATPases associated with a variety of cellular activities BF89_786 SM00530 Helix-turn-helix XRE-family like proteins BF89_797 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF89_799 SM00382 ATPases associated with a variety of cellular activities BF89_799 SM00962 SRP54-type protein, GTPase domain BF89_814 SM00028 Tetratricopeptide repeats BF89_817 SM00028 Tetratricopeptide repeats BF89_823 SM00260 Two component signalling adaptor domain BF89_823 SM00448 cheY-homologous receiver domain BF89_83 SM01207 BF89_83 BF89_832 SM00382 ATPases associated with a variety of cellular activities BF89_850 SM00138 Methyltransferase, chemotaxis proteins BF89_854 SM00260 Two component signalling adaptor domain BF89_854 SM00387 Histidine kinase-like ATPases BF89_854 SM01231 BF89_854 BF89_855 SM00073 Histidine Phosphotransfer domain BF89_856 SM00448 cheY-homologous receiver domain BF89_874 SM00422 helix_turn_helix, mercury resistance BF89_874 SM00871 Bacterial transcription activator, effector binding domain BF89_875 SM00849 Metallo-beta-lactamase superfamily BF89_885 SM00357 Cold shock protein domain BF89_909 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF89_909 SM00475 5'-3' exonuclease BF89_915 SM00450 Rhodanese Homology Domain BF89_928 SM00491 BF89_928 BF89_930 SM00981 BF89_930 BF89_941 SM00060 Fibronectin type 3 domain BF89_943 SM00478 endonuclease III BF89_943 SM00525 BF89_943 BF89_948 SM00491 BF89_948 BF89_949 SM00479 BF89_949 BF89_958 SM00851 MGS-like domain BF89_962 SM00986 Uracil DNA glycosylase superfamily BF89_962 SM00987 UreE urease accessory protein, C-terminal domain BF89_97 SM00835 Cupin BF89_971 SM00914 BF89_971 BF89_972 SM00028 Tetratricopeptide repeats BF89_976 SM00562 BF89_976 BF89_981 SM00411 bacterial (prokaryotic) histone like domain BF89_992 SM01240 BF89_992 BF89_993 SM00316 Ribosomal protein S1-like RNA-binding domain BF89_996 SM00870 BF89_996 BF89_998 SM00644 BF89_998