locus-tag class description KM401_00005 PF00308 Bacterial dnaA protein KM401_00005 PF08299 Bacterial dnaA protein helix-turn-helix KM401_00005 PF11638 DnaA N-terminal domain KM401_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KM401_00010 PF02767 DNA polymerase III beta subunit, central domain KM401_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KM401_00020 PF02463 RecF/RecN/SMC N terminal domain KM401_00025 PF00204 DNA gyrase B KM401_00025 PF00986 DNA gyrase B subunit, carboxyl terminus KM401_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_00025 PF01751 Toprim domain KM401_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A KM401_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller KM401_00060 PF14175 YaaC-like Protein KM401_00065 PF00478 IMP dehydrogenase / GMP reductase domain KM401_00065 PF00571 CBS domain KM401_00070 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_00070 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_00075 PF01680 SOR/SNZ family KM401_00080 PF01174 SNO glutamine amidotransferase family KM401_00085 PF02403 Seryl-tRNA synthetase N-terminal domain KM401_00085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM401_00100 PF01712 Deoxynucleoside kinase KM401_00105 PF01712 Deoxynucleoside kinase KM401_00110 PF00857 Isochorismatase family KM401_00115 PF14437 MafB19-like deaminase KM401_00125 PF12169 DNA polymerase III subunits gamma and tau domain III KM401_00130 PF02575 YbaB/EbfC DNA-binding family KM401_00135 PF13662 Toprim domain KM401_00135 PF02132 RecR protein KM401_00140 PF10704 Protein of unknown function (DUF2508) KM401_00145 PF07441 SigmaK-factor processing regulatory protein BofA KM401_00180 PF01276 Orn/Lys/Arg decarboxylase, major domain KM401_00180 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KM401_00185 PF02223 Thymidylate kinase KM401_00190 PF09115 DNA polymerase III, delta subunit, C terminal KM401_00195 PF04468 PSP1 C-terminal conserved region KM401_00200 PF06156 Initiation control protein YabA KM401_00205 PF05175 Methyltransferase small domain KM401_00210 PF01541 GIY-YIG catalytic domain KM401_00215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM401_00220 PF18277 AbrB C-terminal domain KM401_00220 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KM401_00225 PF08264 Anticodon-binding domain of tRNA KM401_00225 PF09334 tRNA synthetases class I (M) KM401_00225 PF01588 Putative tRNA binding domain KM401_00230 PF01026 TatD related DNase KM401_00235 PF13331 Domain of unknown function (DUF4093) KM401_00235 PF13662 Toprim domain KM401_00240 PF00398 Ribosomal RNA adenine dimethylase KM401_00245 PF05582 YabG peptidase U57 KM401_00250 PF06257 Biofilm formation stimulator VEG KM401_00255 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM401_00260 PF08544 GHMP kinases C terminal KM401_00260 PF00288 GHMP kinases N terminal domain KM401_00265 PF09182 Bacterial purine repressor, N-terminal KM401_00265 PF00156 Phosphoribosyl transferase domain KM401_00270 PF01042 Endoribonuclease L-PSP KM401_00275 PF04026 SpoVG KM401_00280 PF00483 Nucleotidyl transferase KM401_00280 PF00132 Bacterial transferase hexapeptide (six repeats) KM401_00285 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KM401_00285 PF14572 Phosphoribosyl synthetase-associated domain KM401_00290 PF01195 Peptidyl-tRNA hydrolase KM401_00300 PF00271 Helicase conserved C-terminal domain KM401_00300 PF00270 DEAD/DEAH box helicase KM401_00300 PF02559 CarD-like/TRCF domain KM401_00300 PF17757 UvrB interaction domain KM401_00300 PF03461 TRCF domain KM401_00305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KM401_00305 PF15714 Stage V sporulation protein T C-terminal, transcription factor KM401_00310 PF01943 Polysaccharide biosynthesis protein KM401_00310 PF14667 Polysaccharide biosynthesis C-terminal domain KM401_00315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM401_00315 PF03819 MazG nucleotide pyrophosphohydrolase domain KM401_00320 PF01479 S4 domain KM401_00325 PF07873 YabP family KM401_00330 PF09578 Spore cortex protein YabQ (Spore_YabQ) KM401_00340 PF00575 S1 RNA binding domain KM401_00355 PF07228 Stage II sporulation protein E (SpoIIE) KM401_00360 PF09179 TilS substrate binding domain KM401_00360 PF11734 TilS substrate C-terminal domain KM401_00360 PF01171 PP-loop family KM401_00365 PF00156 Phosphoribosyl transferase domain KM401_00370 PF01434 Peptidase family M41 KM401_00370 PF17862 AAA+ lid domain KM401_00370 PF00004 ATPase family associated with various cellular activities (AAA) KM401_00370 PF06480 FtsH Extracellular KM401_00375 PF03309 Type III pantothenate kinase KM401_00380 PF01430 Hsp33 protein KM401_00385 PF00291 Pyridoxal-phosphate dependent enzyme KM401_00390 PF04715 Anthranilate synthase component I, N terminal region KM401_00390 PF00425 chorismate binding enzyme KM401_00395 PF00117 Glutamine amidotransferase class-I KM401_00400 PF01063 Amino-transferase class IV KM401_00405 PF00809 Pterin binding enzyme KM401_00410 PF02152 Dihydroneopterin aldolase KM401_00415 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KM401_00420 PF01381 Helix-turn-helix KM401_00425 PF01207 Dihydrouridine synthase (Dus) KM401_00430 PF01336 OB-fold nucleic acid binding domain KM401_00430 PF00152 tRNA synthetases class II (D, K and N) KM401_00450 PF05848 CtsR N-terminal HTH domain KM401_00450 PF17727 CtsR C-terminal dimerization domain KM401_00455 PF02151 UvrB/uvrC motif KM401_00460 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain KM401_00465 PF10431 C-terminal, D2-small domain, of ClpB protein KM401_00465 PF02861 Clp amino terminal domain, pathogenicity island component KM401_00465 PF17871 AAA lid domain KM401_00465 PF07724 AAA domain (Cdc48 subfamily) KM401_00465 PF00004 ATPase family associated with various cellular activities (AAA) KM401_00470 PF18073 Rubredoxin metal binding domain KM401_00475 PF10635 DisA bacterial checkpoint controller linker region KM401_00475 PF02457 DisA bacterial checkpoint controller nucleotide-binding KM401_00485 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KM401_00490 PF02542 YgbB family KM401_00495 PF00749 tRNA synthetases class I (E and Q), catalytic domain KM401_00500 PF06426 Serine acetyltransferase, N-terminal KM401_00500 PF00132 Bacterial transferase hexapeptide (six repeats) KM401_00505 PF01406 tRNA synthetases class I (C) catalytic domain KM401_00505 PF09190 DALR domain KM401_00510 PF00636 Ribonuclease III domain KM401_00515 PF00588 SpoU rRNA Methylase family KM401_00515 PF08032 RNA 2'-O ribose methyltransferase substrate binding KM401_00520 PF05991 YacP-like NYN domain KM401_00525 PF08281 Sigma-70, region 4 KM401_00525 PF04542 Sigma-70 region 2 KM401_00530 PF00471 Ribosomal protein L33 KM401_00535 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KM401_00540 PF02357 Transcription termination factor nusG KM401_00540 PF00467 KOW motif KM401_00545 PF03946 Ribosomal protein L11, N-terminal domain KM401_00545 PF00298 Ribosomal protein L11, RNA binding domain KM401_00550 PF00687 Ribosomal protein L1p/L10e family KM401_00555 PF00466 Ribosomal protein L10 KM401_00560 PF16320 Ribosomal protein L7/L12 dimerisation domain KM401_00560 PF00542 Ribosomal protein L7/L12 C-terminal domain KM401_00565 PF05175 Methyltransferase small domain KM401_00570 PF04561 RNA polymerase Rpb2, domain 2 KM401_00570 PF10385 RNA polymerase beta subunit external 1 domain KM401_00570 PF00562 RNA polymerase Rpb2, domain 6 KM401_00570 PF04560 RNA polymerase Rpb2, domain 7 KM401_00570 PF04565 RNA polymerase Rpb2, domain 3 KM401_00570 PF04563 RNA polymerase beta subunit KM401_00575 PF04997 RNA polymerase Rpb1, domain 1 KM401_00575 PF04983 RNA polymerase Rpb1, domain 3 KM401_00575 PF05000 RNA polymerase Rpb1, domain 4 KM401_00575 PF04998 RNA polymerase Rpb1, domain 5 KM401_00575 PF00623 RNA polymerase Rpb1, domain 2 KM401_00580 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KM401_00585 PF00164 Ribosomal protein S12/S23 KM401_00590 PF00177 Ribosomal protein S7p/S5e KM401_00595 PF03144 Elongation factor Tu domain 2 KM401_00595 PF00009 Elongation factor Tu GTP binding domain KM401_00595 PF03764 Elongation factor G, domain IV KM401_00595 PF00679 Elongation factor G C-terminus KM401_00595 PF14492 Elongation Factor G, domain II KM401_00600 PF03143 Elongation factor Tu C-terminal domain KM401_00600 PF03144 Elongation factor Tu domain 2 KM401_00600 PF00009 Elongation factor Tu GTP binding domain KM401_00605 PF00338 Ribosomal protein S10p/S20e KM401_00610 PF00297 Ribosomal protein L3 KM401_00615 PF00573 Ribosomal protein L4/L1 family KM401_00620 PF00276 Ribosomal protein L23 KM401_00625 PF00181 Ribosomal Proteins L2, RNA binding domain KM401_00625 PF03947 Ribosomal Proteins L2, C-terminal domain KM401_00630 PF00203 Ribosomal protein S19 KM401_00635 PF00237 Ribosomal protein L22p/L17e KM401_00640 PF00189 Ribosomal protein S3, C-terminal domain KM401_00640 PF07650 KH domain KM401_00645 PF00252 Ribosomal protein L16p/L10e KM401_00650 PF00831 Ribosomal L29 protein KM401_00655 PF00366 Ribosomal protein S17 KM401_00660 PF00238 Ribosomal protein L14p/L23e KM401_00665 PF00467 KOW motif KM401_00665 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KM401_00670 PF00673 ribosomal L5P family C-terminus KM401_00670 PF00281 Ribosomal protein L5 KM401_00675 PF00253 Ribosomal protein S14p/S29e KM401_00680 PF00410 Ribosomal protein S8 KM401_00685 PF00347 Ribosomal protein L6 KM401_00690 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KM401_00695 PF00333 Ribosomal protein S5, N-terminal domain KM401_00695 PF03719 Ribosomal protein S5, C-terminal domain KM401_00700 PF00327 Ribosomal protein L30p/L7e KM401_00705 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KM401_00710 PF00344 SecY translocase KM401_00715 PF05191 Adenylate kinase, active site lid KM401_00720 PF00557 Metallopeptidase family M24 KM401_00725 PF01176 Translation initiation factor 1A / IF-1 KM401_00730 PF00444 Ribosomal protein L36 KM401_00735 PF00416 Ribosomal protein S13/S18 KM401_00740 PF00411 Ribosomal protein S11 KM401_00745 PF01000 RNA polymerase Rpb3/RpoA insert domain KM401_00745 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KM401_00745 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KM401_00750 PF01196 Ribosomal protein L17 KM401_00755 PF00005 ABC transporter KM401_00760 PF00005 ABC transporter KM401_00765 PF02361 Cobalt transport protein KM401_00770 PF01416 tRNA pseudouridine synthase KM401_00775 PF00572 Ribosomal protein L13 KM401_00780 PF00380 Ribosomal protein S9/S16 KM401_00790 PF01520 N-acetylmuramoyl-L-alanine amidase KM401_00795 PF10609 NUBPL iron-transfer P-loop NTPase KM401_00800 PF17898 Spore germination GerD central core domain KM401_00805 PF14089 KinB-signalling pathway activation in sporulation KM401_00810 PF01522 Polysaccharide deacetylase KM401_00885 PF00491 Arginase family KM401_00890 PF02457 DisA bacterial checkpoint controller nucleotide-binding KM401_00895 PF07949 YbbR-like protein KM401_00900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KM401_00900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KM401_00900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KM401_00900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KM401_00910 PF01380 SIS domain KM401_00915 PF00561 alpha/beta hydrolase fold KM401_00920 PF07729 FCD domain KM401_00920 PF00392 Bacterial regulatory proteins, gntR family KM401_00930 PF02447 GntP family permease KM401_00935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM401_00935 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KM401_00940 PF00326 Prolyl oligopeptidase family KM401_00940 PF07676 WD40-like Beta Propeller Repeat KM401_00975 PF00528 Binding-protein-dependent transport system inner membrane component KM401_00980 PF09383 NIL domain KM401_00980 PF00005 ABC transporter KM401_00985 PF03180 NLPA lipoprotein KM401_00990 PF00107 Zinc-binding dehydrogenase KM401_00990 PF08240 Alcohol dehydrogenase GroES-like domain KM401_01000 PF01565 FAD binding domain KM401_01005 PF07690 Major Facilitator Superfamily KM401_01015 PF07690 Major Facilitator Superfamily KM401_01030 PF00528 Binding-protein-dependent transport system inner membrane component KM401_01035 PF12911 N-terminal TM domain of oligopeptide transport permease C KM401_01035 PF00528 Binding-protein-dependent transport system inner membrane component KM401_01040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_01040 PF00005 ABC transporter KM401_01045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_01045 PF00005 ABC transporter KM401_01050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_01060 PF12833 Helix-turn-helix domain KM401_01075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_01080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_01085 PF00248 Aldo/keto reductase family KM401_01090 PF03807 NADP oxidoreductase coenzyme F420-dependent KM401_01090 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM401_01095 PF04973 Nicotinamide mononucleotide transporter KM401_01100 PF06800 Sugar transport protein KM401_01105 PF00528 Binding-protein-dependent transport system inner membrane component KM401_01115 PF12727 PBP superfamily domain KM401_01115 PF12728 Helix-turn-helix domain KM401_01125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_01125 PF03466 LysR substrate binding domain KM401_01130 PF00892 EamA-like transporter family KM401_01135 PF14142 YrzO-like protein KM401_01145 PF01553 Acyltransferase KM401_01155 PF00356 Bacterial regulatory proteins, lacI family KM401_01155 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM401_01165 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_01165 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_01175 PF01026 TatD related DNase KM401_01180 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) KM401_01205 PF00005 ABC transporter KM401_01205 PF12848 ABC transporter KM401_01205 PF16326 ABC transporter C-terminal domain KM401_01220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_01225 PF00528 Binding-protein-dependent transport system inner membrane component KM401_01230 PF00528 Binding-protein-dependent transport system inner membrane component KM401_01230 PF12911 N-terminal TM domain of oligopeptide transport permease C KM401_01235 PF00005 ABC transporter KM401_01235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_01240 PF00005 ABC transporter KM401_01240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_01275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_01280 PF01557 Fumarylacetoacetate (FAA) hydrolase family KM401_01290 PF07690 Major Facilitator Superfamily KM401_01300 PF08245 Mur ligase middle domain KM401_01300 PF02875 Mur ligase family, glutamate ligase domain KM401_01300 PF01225 Mur ligase family, catalytic domain KM401_01305 PF00271 Helicase conserved C-terminal domain KM401_01305 PF00270 DEAD/DEAH box helicase KM401_01310 PF03851 UV-endonuclease UvdE KM401_01315 PF01694 Rhomboid family KM401_01320 PF01648 4'-phosphopantetheinyl transferase superfamily KM401_01330 PF01168 Alanine racemase, N-terminal domain KM401_01330 PF00842 Alanine racemase, C-terminal domain KM401_01335 PF01402 Ribbon-helix-helix protein, copG family KM401_01340 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system KM401_01345 PF16921 Tex protein YqgF-like domain KM401_01345 PF09371 Tex-like protein N-terminal domain KM401_01345 PF00575 S1 RNA binding domain KM401_01345 PF17674 HHH domain KM401_01355 PF17283 SprT-like zinc ribbon domain KM401_01355 PF10263 SprT-like family KM401_01440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KM401_01445 PF00814 Glycoprotease family KM401_01450 PF00583 Acetyltransferase (GNAT) family KM401_01455 PF00814 Glycoprotease family KM401_01460 PF00005 ABC transporter KM401_01460 PF16326 ABC transporter C-terminal domain KM401_01460 PF12848 ABC transporter KM401_01465 PF02629 CoA binding domain KM401_01465 PF06971 Putative DNA-binding protein N-terminus KM401_01475 PF02517 CPBP intramembrane metalloprotease KM401_01480 PF00166 Chaperonin 10 Kd subunit KM401_01485 PF00118 TCP-1/cpn60 chaperonin family KM401_01490 PF00117 Glutamine amidotransferase class-I KM401_01490 PF00958 GMP synthase C terminal domain KM401_01490 PF02540 NAD synthase KM401_01495 PF00860 Permease family KM401_01500 PF00072 Response regulator receiver domain KM401_01500 PF00486 Transcriptional regulatory protein, C terminal KM401_01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_01505 PF00512 His Kinase A (phospho-acceptor) domain KM401_01505 PF00989 PAS fold KM401_01505 PF16736 Single Cache-like KM401_01535 PF08241 Methyltransferase domain KM401_01575 PF02673 Bacitracin resistance protein BacA KM401_01585 PF00005 ABC transporter KM401_01590 PF00512 His Kinase A (phospho-acceptor) domain KM401_01590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_01595 PF00072 Response regulator receiver domain KM401_01595 PF00486 Transcriptional regulatory protein, C terminal KM401_01615 PF00731 AIR carboxylase KM401_01620 PF02222 ATP-grasp domain KM401_01620 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KM401_01625 PF10397 Adenylosuccinate lyase C-terminus KM401_01625 PF00206 Lyase KM401_01630 PF01259 SAICAR synthetase KM401_01635 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase KM401_01645 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KM401_01645 PF00586 AIR synthase related protein, N-terminal domain KM401_01645 PF02769 AIR synthase related protein, C-terminal domain KM401_01650 PF00156 Phosphoribosyl transferase domain KM401_01655 PF02769 AIR synthase related protein, C-terminal domain KM401_01655 PF00586 AIR synthase related protein, N-terminal domain KM401_01660 PF00551 Formyl transferase KM401_01665 PF01808 AICARFT/IMPCHase bienzyme KM401_01665 PF02142 MGS-like domain KM401_01670 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KM401_01670 PF02843 Phosphoribosylglycinamide synthetase, C domain KM401_01670 PF02844 Phosphoribosylglycinamide synthetase, N domain KM401_01690 PF01884 PcrB family KM401_01695 PF00580 UvrD/REP helicase N-terminal domain KM401_01695 PF13361 UvrD-like helicase C-terminal domain KM401_01700 PF03120 NAD-dependent DNA ligase OB-fold domain KM401_01700 PF01653 NAD-dependent DNA ligase adenylation domain KM401_01700 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KM401_01700 PF00533 BRCA1 C Terminus (BRCT) domain KM401_01700 PF12826 Helix-hairpin-helix motif KM401_01705 PF07537 CamS sex pheromone cAM373 precursor KM401_01710 PF01925 Sulfite exporter TauE/SafE KM401_01715 PF00171 Aldehyde dehydrogenase family KM401_01725 PF00857 Isochorismatase family KM401_01730 PF00005 ABC transporter KM401_01730 PF09383 NIL domain KM401_01735 PF00528 Binding-protein-dependent transport system inner membrane component KM401_01740 PF03180 NLPA lipoprotein KM401_01760 PF01047 MarR family KM401_01770 PF02686 Glu-tRNAGln amidotransferase C subunit KM401_01775 PF01425 Amidase KM401_01780 PF02934 GatB/GatE catalytic domain KM401_01780 PF02637 GatB domain KM401_01785 PF00781 Diacylglycerol kinase catalytic domain KM401_01790 PF13419 Haloacid dehalogenase-like hydrolase KM401_01795 PF00202 Aminotransferase class-III KM401_01800 PF00158 Sigma-54 interaction domain KM401_01805 PF00171 Aldehyde dehydrogenase family KM401_01810 PF00893 Small Multidrug Resistance protein KM401_01815 PF02073 Thermophilic metalloprotease (M29) KM401_01830 PF07662 Na+ dependent nucleoside transporter C-terminus KM401_01830 PF01773 Na+ dependent nucleoside transporter N-terminus KM401_01830 PF07670 Nucleoside recognition KM401_01835 PF02475 Met-10+ like-protein KM401_01835 PF01938 TRAM domain KM401_01835 PF05958 tRNA (Uracil-5-)-methyltransferase KM401_01840 PF01207 Dihydrouridine synthase (Dus) KM401_01850 PF07308 Protein of unknown function (DUF1456) KM401_01865 PF13378 Enolase C-terminal domain-like KM401_01865 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KM401_01875 PF03553 Na+/H+ antiporter family KM401_01880 PF07687 Peptidase dimerisation domain KM401_01880 PF01546 Peptidase family M20/M25/M40 KM401_01890 PF13192 Thioredoxin domain KM401_01890 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_01895 PF00578 AhpC/TSA family KM401_01900 PF01636 Phosphotransferase enzyme family KM401_01905 PF01008 Initiation factor 2 subunit family KM401_01910 PF00596 Class II Aldolase and Adducin N-terminal domain KM401_01915 PF01032 FecCD transport family KM401_01920 PF01032 FecCD transport family KM401_01925 PF01497 Periplasmic binding protein KM401_01930 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_01940 PF12728 Helix-turn-helix domain KM401_01975 PF13426 PAS domain KM401_01975 PF00989 PAS fold KM401_01975 PF00512 His Kinase A (phospho-acceptor) domain KM401_01975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_01975 PF13188 PAS domain KM401_01995 PF10127 RNA repair pathway DNA polymerase beta family KM401_02000 PF07690 Major Facilitator Superfamily KM401_02005 PF00355 Rieske [2Fe-2S] domain KM401_02005 PF01266 FAD dependent oxidoreductase KM401_02015 PF00528 Binding-protein-dependent transport system inner membrane component KM401_02020 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM401_02025 PF00005 ABC transporter KM401_02030 PF12729 Four helix bundle sensory module for signal transduction KM401_02030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_02030 PF00672 HAMP domain KM401_02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_02035 PF00672 HAMP domain KM401_02035 PF12729 Four helix bundle sensory module for signal transduction KM401_02040 PF16657 Maltogenic Amylase, C-terminal domain KM401_02040 PF00128 Alpha amylase, catalytic domain KM401_02045 PF02378 Phosphotransferase system, EIIC KM401_02045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KM401_02045 PF00367 phosphotransferase system, EIIB KM401_02050 PF03372 Endonuclease/Exonuclease/phosphatase family KM401_02055 PF01061 ABC-2 type transporter KM401_02060 PF01131 DNA topoisomerase KM401_02060 PF01751 Toprim domain KM401_02065 PF02110 Hydroxyethylthiazole kinase family KM401_02070 PF02581 Thiamine monophosphate synthase KM401_02075 PF03605 Anaerobic c4-dicarboxylate membrane transporter KM401_02080 PF00672 HAMP domain KM401_02080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_02085 PF01910 Thiamine-binding protein KM401_02090 PF00528 Binding-protein-dependent transport system inner membrane component KM401_02100 PF00005 ABC transporter KM401_02105 PF12848 ABC transporter KM401_02105 PF00005 ABC transporter KM401_02110 PF00041 Fibronectin type III domain KM401_02110 PF00704 Glycosyl hydrolases family 18 KM401_02130 PF08360 QacR-like protein, C-terminal region KM401_02130 PF00440 Bacterial regulatory proteins, tetR family KM401_02150 PF11700 Vacuole effluxer Atg22 like KM401_02165 PF03129 Anticodon binding domain KM401_02165 PF09180 Prolyl-tRNA synthetase, C-terminal KM401_02165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM401_02175 PF00480 ROK family KM401_02180 PF02342 TerD domain KM401_02185 PF02342 TerD domain KM401_02190 PF02342 TerD domain KM401_02195 PF03741 Integral membrane protein TerC family KM401_02200 PF14266 Putative component of 'biosynthetic module' KM401_02205 PF05816 Toxic anion resistance protein (TelA) KM401_02210 PF00689 Cation transporting ATPase, C-terminus KM401_02210 PF00690 Cation transporter/ATPase, N-terminus KM401_02215 PF06569 Protein of unknown function (DUF1128) KM401_02220 PF01451 Low molecular weight phosphotyrosine protein phosphatase KM401_02230 PF03631 Virulence factor BrkB KM401_02240 PF00892 EamA-like transporter family KM401_02260 PF09335 SNARE associated Golgi protein KM401_02275 PF16242 Pyridoxamine 5'-phosphate oxidase like KM401_02280 PF01699 Sodium/calcium exchanger protein KM401_02285 PF14167 YfkD-like protein KM401_02290 PF04055 Radical SAM superfamily KM401_02290 PF08756 YfkB-like domain KM401_02300 PF05681 Fumarate hydratase (Fumerase) KM401_02300 PF05683 Fumarase C-terminus KM401_02305 PF01522 Polysaccharide deacetylase KM401_02315 PF00730 HhH-GPD superfamily base excision DNA repair protein KM401_02320 PF01938 TRAM domain KM401_02320 PF05958 tRNA (Uracil-5-)-methyltransferase KM401_02325 PF00589 Phage integrase family KM401_02325 PF14659 Phage integrase, N-terminal SAM-like domain KM401_02335 PF01381 Helix-turn-helix KM401_02350 PF01381 Helix-turn-helix KM401_02385 PF01695 IstB-like ATP binding protein KM401_02385 PF07319 Primosomal protein DnaI N-terminus KM401_02605 PF01183 Glycosyl hydrolases family 25 KM401_02615 PF01416 tRNA pseudouridine synthase KM401_02625 PF02954 Bacterial regulatory protein, Fis family KM401_02625 PF13426 PAS domain KM401_02625 PF00158 Sigma-54 interaction domain KM401_02635 PF00324 Amino acid permease KM401_02640 PF07687 Peptidase dimerisation domain KM401_02640 PF01546 Peptidase family M20/M25/M40 KM401_02665 PF04960 Glutaminase KM401_02670 PF00367 phosphotransferase system, EIIB KM401_02670 PF02378 Phosphotransferase system, EIIC KM401_02675 PF00144 Beta-lactamase KM401_02690 PF00535 Glycosyl transferase family 2 KM401_02695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM401_02695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM401_02695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM401_02700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM401_02700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM401_02700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM401_02705 PF00551 Formyl transferase KM401_02705 PF02911 Formyl transferase, C-terminal domain KM401_02705 PF01370 NAD dependent epimerase/dehydratase family KM401_02710 PF00535 Glycosyl transferase family 2 KM401_02720 PF01228 Glycine radical KM401_02720 PF02901 Pyruvate formate lyase-like KM401_02725 PF04055 Radical SAM superfamily KM401_02730 PF04101 Glycosyltransferase family 28 C-terminal domain KM401_02730 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase KM401_02745 PF01979 Amidohydrolase family KM401_02750 PF01370 NAD dependent epimerase/dehydratase family KM401_02750 PF08338 Domain of unknown function (DUF1731) KM401_02755 PF02631 RecX family KM401_02770 PF08176 Small acid-soluble spore protein K family KM401_02775 PF14043 WVELL protein KM401_02780 PF04307 LexA-binding, inner membrane-associated putative hydrolase KM401_02785 PF00730 HhH-GPD superfamily base excision DNA repair protein KM401_02785 PF14815 NUDIX domain KM401_02795 PF04259 Small, acid-soluble spore protein, gamma-type KM401_02800 PF14182 YgaB-like protein KM401_02805 PF04167 Protein of unknown function (DUF402) KM401_02810 PF00664 ABC transporter transmembrane region KM401_02810 PF00005 ABC transporter KM401_02815 PF06081 Aromatic acid exporter family member 1 KM401_02820 PF04898 Glutamate synthase central domain KM401_02820 PF01645 Conserved region in glutamate synthase KM401_02820 PF01493 GXGXG motif KM401_02820 PF00310 Glutamine amidotransferases class-II KM401_02825 PF00202 Aminotransferase class-III KM401_02830 PF00005 ABC transporter KM401_02845 PF07885 Ion channel KM401_02850 PF00578 AhpC/TSA family KM401_02855 PF01475 Ferric uptake regulator family KM401_02860 PF11023 Zinc-ribbon containing domain KM401_02960 PF01709 Transcriptional regulator KM401_02965 PF13344 Haloacid dehalogenase-like hydrolase KM401_02965 PF00293 NUDIX domain KM401_02970 PF00905 Penicillin binding protein transpeptidase domain KM401_02970 PF00912 Transglycosylase KM401_02975 PF13462 Thioredoxin KM401_02985 PF08331 Domain of unknown function (DUF1730) KM401_02990 PF12671 Putative amidase domain KM401_02995 PF00588 SpoU rRNA Methylase family KM401_03000 PF03707 Bacterial signalling protein N terminal repeat KM401_03000 PF00990 Diguanylate cyclase, GGDEF domain KM401_03000 PF00563 EAL domain KM401_03005 PF06798 PrkA serine protein kinase C-terminal domain KM401_03005 PF08298 PrkA AAA domain KM401_03010 PF04285 Protein of unknown function (DUF444) KM401_03025 PF02028 BCCT, betaine/carnitine/choline family transporter KM401_03030 PF08453 Peptidase family M9 N-terminal KM401_03030 PF01752 Collagenase KM401_03030 PF18496 Collagenase G catalytic helper subdomain KM401_03040 PF15975 Flotillin KM401_03040 PF01145 SPFH domain / Band 7 family KM401_03045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_03045 PF02743 Cache domain KM401_03045 PF00672 HAMP domain KM401_03050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_03050 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM401_03050 PF00989 PAS fold KM401_03050 PF17203 Single cache domain 3 KM401_03055 PF12431 Transcriptional regulator KM401_03055 PF08279 HTH domain KM401_03055 PF00072 Response regulator receiver domain KM401_03060 PF03600 Citrate transporter KM401_03080 PF04309 Glycerol-3-phosphate responsive antiterminator KM401_03085 PF17912 MalK OB fold domain KM401_03085 PF00005 ABC transporter KM401_03090 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03095 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03100 PF13416 Bacterial extracellular solute-binding protein KM401_03105 PF00149 Calcineurin-like phosphoesterase KM401_03110 PF00486 Transcriptional regulatory protein, C terminal KM401_03110 PF00072 Response regulator receiver domain KM401_03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_03115 PF00512 His Kinase A (phospho-acceptor) domain KM401_03125 PF13529 Peptidase_C39 like family KM401_03130 PF00672 HAMP domain KM401_03130 PF02743 Cache domain KM401_03130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_03135 PF00989 PAS fold KM401_03135 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM401_03135 PF17203 Single cache domain 3 KM401_03140 PF00072 Response regulator receiver domain KM401_03145 PF03390 2-hydroxycarboxylate transporter family KM401_03150 PF00390 Malic enzyme, N-terminal domain KM401_03150 PF03949 Malic enzyme, NAD binding domain KM401_03160 PF00892 EamA-like transporter family KM401_03165 PF00155 Aminotransferase class I and II KM401_03165 PF00392 Bacterial regulatory proteins, gntR family KM401_03175 PF18698 Histidine kinase sensor domain KM401_03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_03175 PF00989 PAS fold KM401_03175 PF00672 HAMP domain KM401_03175 PF00512 His Kinase A (phospho-acceptor) domain KM401_03180 PF00072 Response regulator receiver domain KM401_03180 PF00486 Transcriptional regulatory protein, C terminal KM401_03185 PF13508 Acetyltransferase (GNAT) domain KM401_03185 PF00583 Acetyltransferase (GNAT) family KM401_03190 PF02634 FdhD/NarQ family KM401_03195 PF00037 4Fe-4S binding domain KM401_03195 PF01568 Molydopterin dinucleotide binding domain KM401_03195 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KM401_03195 PF00384 Molybdopterin oxidoreductase KM401_03195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KM401_03200 PF07849 Protein of unknown function (DUF1641) KM401_03210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KM401_03210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KM401_03215 PF13520 Amino acid permease KM401_03220 PF01022 Bacterial regulatory protein, arsR family KM401_03225 PF00403 Heavy-metal-associated domain KM401_03230 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KM401_03230 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KM401_03230 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KM401_03245 PF07504 Fungalysin/Thermolysin Propeptide Motif KM401_03245 PF03413 Peptidase propeptide and YPEB domain KM401_03245 PF01447 Thermolysin metallopeptidase, catalytic domain KM401_03245 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM401_03265 PF04294 VanW like protein KM401_03270 PF03816 Cell envelope-related transcriptional attenuator domain KM401_03275 PF01773 Na+ dependent nucleoside transporter N-terminus KM401_03275 PF07662 Na+ dependent nucleoside transporter C-terminus KM401_03280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_03285 PF00571 CBS domain KM401_03285 PF03471 Transporter associated domain KM401_03285 PF01595 Cyclin M transmembrane N-terminal domain KM401_03290 PF10415 Fumarase C C-terminus KM401_03290 PF00206 Lyase KM401_03295 PF02652 L-lactate permease KM401_03300 PF01022 Bacterial regulatory protein, arsR family KM401_03305 PF08141 Small acid-soluble spore protein H family KM401_03310 PF00854 POT family KM401_03315 PF01497 Periplasmic binding protein KM401_03320 PF01032 FecCD transport family KM401_03325 PF01032 FecCD transport family KM401_03330 PF00005 ABC transporter KM401_03335 PF08241 Methyltransferase domain KM401_03340 PF00155 Aminotransferase class I and II KM401_03345 PF01370 NAD dependent epimerase/dehydratase family KM401_03350 PF00293 NUDIX domain KM401_03350 PF13344 Haloacid dehalogenase-like hydrolase KM401_03360 PF07728 AAA domain (dynein-related subfamily) KM401_03365 PF13396 Phospholipase_D-nuclease N-terminal KM401_03365 PF13091 PLD-like domain KM401_03380 PF00990 Diguanylate cyclase, GGDEF domain KM401_03380 PF00563 EAL domain KM401_03380 PF03707 Bacterial signalling protein N terminal repeat KM401_03385 PF13520 Amino acid permease KM401_03390 PF00392 Bacterial regulatory proteins, gntR family KM401_03390 PF07702 UTRA domain KM401_03395 PF00367 phosphotransferase system, EIIB KM401_03395 PF02378 Phosphotransferase system, EIIC KM401_03400 PF00128 Alpha amylase, catalytic domain KM401_03400 PF16657 Maltogenic Amylase, C-terminal domain KM401_03415 PF03323 Bacillus/Clostridium GerA spore germination protein KM401_03425 PF01636 Phosphotransferase enzyme family KM401_03430 PF01235 Sodium:alanine symporter family KM401_03435 PF00005 ABC transporter KM401_03440 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM401_03445 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03450 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03455 PF00324 Amino acid permease KM401_03480 PF08279 HTH domain KM401_03480 PF13280 WYL domain KM401_03485 PF01872 RibD C-terminal domain KM401_03490 PF00989 PAS fold KM401_03490 PF00512 His Kinase A (phospho-acceptor) domain KM401_03490 PF18698 Histidine kinase sensor domain KM401_03490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_03490 PF00672 HAMP domain KM401_03495 PF00486 Transcriptional regulatory protein, C terminal KM401_03495 PF00072 Response regulator receiver domain KM401_03505 PF00916 Sulfate permease family KM401_03505 PF01740 STAS domain KM401_03510 PF00582 Universal stress protein family KM401_03520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_03525 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03530 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_03535 PF00005 ABC transporter KM401_03540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_03540 PF00005 ABC transporter KM401_03545 PF07690 Major Facilitator Superfamily KM401_03550 PF01047 MarR family KM401_03560 PF00356 Bacterial regulatory proteins, lacI family KM401_03565 PF00294 pfkB family carbohydrate kinase KM401_03570 PF05025 RbsD / FucU transport protein family KM401_03575 PF00005 ABC transporter KM401_03580 PF02653 Branched-chain amino acid transport system / permease component KM401_03585 PF13407 Periplasmic binding protein domain KM401_03590 PF00923 Transaldolase/Fructose-6-phosphate aldolase KM401_03595 PF05547 Immune inhibitor A peptidase M6 KM401_03610 PF08240 Alcohol dehydrogenase GroES-like domain KM401_03610 PF00107 Zinc-binding dehydrogenase KM401_03620 PF00882 Zinc dependent phospholipase C KM401_03625 PF03372 Endonuclease/Exonuclease/phosphatase family KM401_03650 PF02673 Bacitracin resistance protein BacA KM401_03655 PF02743 Cache domain KM401_03655 PF00672 HAMP domain KM401_03655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_03660 PF06725 3D domain KM401_03660 PF01476 LysM domain KM401_03665 PF01381 Helix-turn-helix KM401_03675 PF04203 Sortase domain KM401_03680 PF00854 POT family KM401_03685 PF05525 Branched-chain amino acid transport protein KM401_03700 PF00324 Amino acid permease KM401_03705 PF00860 Permease family KM401_03730 PF00999 Sodium/hydrogen exchanger family KM401_03730 PF02080 TrkA-C domain KM401_03730 PF02254 TrkA-N domain KM401_03740 PF00510 Cytochrome c oxidase subunit III KM401_03745 PF00115 Cytochrome C and Quinol oxidase polypeptide I KM401_03750 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KM401_03755 PF00324 Amino acid permease KM401_03760 PF13529 Peptidase_C39 like family KM401_03765 PF07687 Peptidase dimerisation domain KM401_03765 PF01546 Peptidase family M20/M25/M40 KM401_03770 PF11755 Protein of unknown function (DUF3311) KM401_03775 PF00474 Sodium:solute symporter family KM401_03780 PF03323 Bacillus/Clostridium GerA spore germination protein KM401_03785 PF03845 Spore germination protein KM401_03790 PF05504 Spore germination B3/ GerAC like, C-terminal KM401_03795 PF07670 Nucleoside recognition KM401_03795 PF17910 FeoB cytosolic helical domain KM401_03795 PF07664 Ferrous iron transport protein B C terminus KM401_03795 PF02421 Ferrous iron transport protein B KM401_03800 PF07670 Nucleoside recognition KM401_03800 PF02421 Ferrous iron transport protein B KM401_03800 PF07664 Ferrous iron transport protein B C terminus KM401_03800 PF17910 FeoB cytosolic helical domain KM401_03805 PF04023 FeoA domain KM401_03805 PF07664 Ferrous iron transport protein B C terminus KM401_03805 PF02421 Ferrous iron transport protein B KM401_03805 PF07670 Nucleoside recognition KM401_03805 PF17910 FeoB cytosolic helical domain KM401_03810 PF12849 PBP superfamily domain KM401_03815 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03820 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03950 PF00571 CBS domain KM401_03965 PF08239 Bacterial SH3 domain KM401_03965 PF00246 Zinc carboxypeptidase KM401_03970 PF03070 TENA/THI-4/PQQC family KM401_03975 PF00005 ABC transporter KM401_03980 PF00528 Binding-protein-dependent transport system inner membrane component KM401_03985 PF09084 NMT1/THI5 like KM401_03990 PF02581 Thiamine monophosphate synthase KM401_03995 PF01266 FAD dependent oxidoreductase KM401_04000 PF02597 ThiS family KM401_04005 PF05690 Thiazole biosynthesis protein ThiG KM401_04010 PF00899 ThiF family KM401_04015 PF08543 Phosphomethylpyrimidine kinase KM401_04040 PF03814 Potassium-transporting ATPase A subunit KM401_04050 PF02669 K+-transporting ATPase, c chain KM401_04055 PF02702 Osmosensitive K+ channel His kinase sensor domain KM401_04060 PF07690 Major Facilitator Superfamily KM401_04065 PF01047 MarR family KM401_04080 PF00860 Permease family KM401_04100 PF00294 pfkB family carbohydrate kinase KM401_04105 PF00251 Glycosyl hydrolases family 32 N-terminal domain KM401_04105 PF08244 Glycosyl hydrolases family 32 C terminal KM401_04110 PF02378 Phosphotransferase system, EIIC KM401_04110 PF00367 phosphotransferase system, EIIB KM401_04115 PF13407 Periplasmic binding protein domain KM401_04115 PF00356 Bacterial regulatory proteins, lacI family KM401_04125 PF00085 Thioredoxin KM401_04130 PF02600 Disulfide bond formation protein DsbB KM401_04135 PF14148 YhdB-like protein KM401_04155 PF03323 Bacillus/Clostridium GerA spore germination protein KM401_04165 PF00881 Nitroreductase family KM401_04170 PF04293 SpoVR like protein KM401_04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_04195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM401_04200 PF02583 Metal-sensitive transcriptional repressor KM401_04205 PF00581 Rhodanese-like domain KM401_04205 PF01206 Sulfurtransferase TusA KM401_04210 PF00753 Metallo-beta-lactamase superfamily KM401_04210 PF00581 Rhodanese-like domain KM401_04215 PF01206 Sulfurtransferase TusA KM401_04220 PF00581 Rhodanese-like domain KM401_04230 PF13686 DsrE/DsrF/DrsH-like family KM401_04235 PF01925 Sulfite exporter TauE/SafE KM401_04245 PF03816 Cell envelope-related transcriptional attenuator domain KM401_04250 PF00107 Zinc-binding dehydrogenase KM401_04250 PF08240 Alcohol dehydrogenase GroES-like domain KM401_04255 PF02690 Na+/Pi-cotransporter KM401_04260 PF07690 Major Facilitator Superfamily KM401_04270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KM401_04270 PF05043 Mga helix-turn-helix domain KM401_04270 PF00874 PRD domain KM401_04270 PF08279 HTH domain KM401_04275 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KM401_04280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM401_04285 PF02378 Phosphotransferase system, EIIC KM401_04300 PF06725 3D domain KM401_04300 PF01476 LysM domain KM401_04305 PF12704 MacB-like periplasmic core domain KM401_04305 PF02687 FtsX-like permease family KM401_04310 PF00005 ABC transporter KM401_04320 PF09529 Integral membrane protein (intg_mem_TP0381) KM401_04335 PF05525 Branched-chain amino acid transport protein KM401_04340 PF05067 Manganese containing catalase KM401_04345 PF12652 CotJB protein KM401_04350 PF11007 Spore coat associated protein JA (CotJA) KM401_04365 PF02735 Ku70/Ku80 beta-barrel domain KM401_04375 PF09335 SNARE associated Golgi protein KM401_04410 PF13520 Amino acid permease KM401_04415 PF00999 Sodium/hydrogen exchanger family KM401_04425 PF01418 Helix-turn-helix domain, rpiR family KM401_04425 PF01380 SIS domain KM401_04430 PF01380 SIS domain KM401_04435 PF00367 phosphotransferase system, EIIB KM401_04435 PF02378 Phosphotransferase system, EIIC KM401_04445 PF07681 DoxX KM401_04460 PF00892 EamA-like transporter family KM401_04465 PF01037 Lrp/AsnC ligand binding domain KM401_04475 PF00893 Small Multidrug Resistance protein KM401_04480 PF00893 Small Multidrug Resistance protein KM401_04485 PF17934 Tetracyclin repressor-like, C-terminal domain KM401_04485 PF00440 Bacterial regulatory proteins, tetR family KM401_04490 PF07690 Major Facilitator Superfamily KM401_04495 PF01638 HxlR-like helix-turn-helix KM401_04505 PF02525 Flavodoxin-like fold KM401_04510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_04510 PF12793 Sugar transport-related sRNA regulator N-term KM401_04515 PF07690 Major Facilitator Superfamily KM401_04525 PF01965 DJ-1/PfpI family KM401_04530 PF18011 C-terminal domain found in long catalases KM401_04530 PF06628 Catalase-related immune-responsive KM401_04530 PF00199 Catalase KM401_04540 PF13520 Amino acid permease KM401_04545 PF01177 Asp/Glu/Hydantoin racemase KM401_04555 PF00171 Aldehyde dehydrogenase family KM401_04560 PF00005 ABC transporter KM401_04560 PF00664 ABC transporter transmembrane region KM401_04570 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM401_04575 PF00528 Binding-protein-dependent transport system inner membrane component KM401_04580 PF00005 ABC transporter KM401_04585 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM401_04595 PF14398 YheC/D like ATP-grasp KM401_04605 PF04286 Protein of unknown function (DUF445) KM401_04610 PF06133 Control of competence regulator ComK, YlbF/YmcA KM401_04625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM401_04625 PF00205 Thiamine pyrophosphate enzyme, central domain KM401_04625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM401_04630 PF03306 Alpha-acetolactate decarboxylase KM401_04640 PF02245 Methylpurine-DNA glycosylase (MPG) KM401_04660 PF04055 Radical SAM superfamily KM401_04665 PF13193 AMP-binding enzyme C-terminal domain KM401_04665 PF00501 AMP-binding enzyme KM401_04675 PF00916 Sulfate permease family KM401_04675 PF01740 STAS domain KM401_04695 PF01043 SecA preprotein cross-linking domain KM401_04695 PF07517 SecA DEAD-like domain KM401_04695 PF07516 SecA Wing and Scaffold domain KM401_04700 PF14667 Polysaccharide biosynthesis C-terminal domain KM401_04700 PF01943 Polysaccharide biosynthesis protein KM401_04710 PF02368 Bacterial Ig-like domain (group 2) KM401_04710 PF13205 Bacterial Ig-like domain KM401_04710 PF00395 S-layer homology domain KM401_04715 PF00395 S-layer homology domain KM401_04725 PF03062 MBOAT, membrane-bound O-acyltransferase family KM401_04730 PF03062 MBOAT, membrane-bound O-acyltransferase family KM401_04745 PF00378 Enoyl-CoA hydratase/isomerase KM401_04765 PF05343 M42 glutamyl aminopeptidase KM401_04770 PF01520 N-acetylmuramoyl-L-alanine amidase KM401_04770 PF00395 S-layer homology domain KM401_04785 PF05544 Proline racemase KM401_04790 PF02423 Ornithine cyclodeaminase/mu-crystallin family KM401_04820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_04825 PF00528 Binding-protein-dependent transport system inner membrane component KM401_04830 PF12911 N-terminal TM domain of oligopeptide transport permease C KM401_04830 PF00528 Binding-protein-dependent transport system inner membrane component KM401_04840 PF00005 ABC transporter KM401_04840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_04845 PF01541 GIY-YIG catalytic domain KM401_04875 PF00083 Sugar (and other) transporter KM401_04880 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM401_04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_04885 PF08279 HTH domain KM401_04885 PF00072 Response regulator receiver domain KM401_04885 PF12431 Transcriptional regulator KM401_04890 PF03401 Tripartite tricarboxylate transporter family receptor KM401_04895 PF02342 TerD domain KM401_04920 PF13411 MerR HTH family regulatory protein KM401_04920 PF06445 GyrI-like small molecule binding domain KM401_04935 PF00772 DnaB-like helicase N terminal domain KM401_04935 PF03796 DnaB-like helicase C terminal domain KM401_04960 PF01925 Sulfite exporter TauE/SafE KM401_04975 PF07690 Major Facilitator Superfamily KM401_05020 PF00550 Phosphopantetheine attachment site KM401_05020 PF07993 Male sterility protein KM401_05025 PF18665 Tetracyclin repressor-like, C-terminal domain KM401_05025 PF00440 Bacterial regulatory proteins, tetR family KM401_05045 PF01066 CDP-alcohol phosphatidyltransferase KM401_05065 PF02733 Dak1 domain KM401_05075 PF02733 Dak1 domain KM401_05080 PF02525 Flavodoxin-like fold KM401_05085 PF02082 Transcriptional regulator KM401_05115 PF00672 HAMP domain KM401_05115 PF01966 HD domain KM401_05135 PF00395 S-layer homology domain KM401_05160 PF11181 Heat induced stress protein YflT KM401_05165 PF05532 CsbD-like KM401_05180 PF01740 STAS domain KM401_05185 PF13581 Histidine kinase-like ATPase domain KM401_05190 PF04542 Sigma-70 region 2 KM401_05190 PF04539 Sigma-70 region 3 KM401_05190 PF04545 Sigma-70, region 4 KM401_05200 PF13426 PAS domain KM401_05200 PF07228 Stage II sporulation protein E (SpoIIE) KM401_05205 PF03705 CheR methyltransferase, all-alpha domain KM401_05205 PF01739 CheR methyltransferase, SAM binding domain KM401_05210 PF01627 Hpt domain KM401_05210 PF00072 Response regulator receiver domain KM401_05210 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM401_05210 PF00512 His Kinase A (phospho-acceptor) domain KM401_05210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_05235 PF01906 Putative heavy-metal-binding KM401_05245 PF00107 Zinc-binding dehydrogenase KM401_05245 PF08240 Alcohol dehydrogenase GroES-like domain KM401_05250 PF11121 Protein of unknown function (DUF2639) KM401_05265 PF00149 Calcineurin-like phosphoesterase KM401_05270 PF13514 AAA domain KM401_05275 PF12323 Helix-turn-helix domain KM401_05275 PF01385 Probable transposase KM401_05275 PF07282 Putative transposase DNA-binding domain KM401_05285 PF01966 HD domain KM401_05285 PF01336 OB-fold nucleic acid binding domain KM401_05290 PF00440 Bacterial regulatory proteins, tetR family KM401_05295 PF07690 Major Facilitator Superfamily KM401_05300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_05310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_05315 PF18801 response regulator aspartate phosphatase H, N terminal KM401_05320 PF08386 TAP-like protein KM401_05320 PF00561 alpha/beta hydrolase fold KM401_05340 PF04309 Glycerol-3-phosphate responsive antiterminator KM401_05345 PF00230 Major intrinsic protein KM401_05350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM401_05350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM401_05355 PF01266 FAD dependent oxidoreductase KM401_05355 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KM401_05370 PF04542 Sigma-70 region 2 KM401_05370 PF08281 Sigma-70, region 4 KM401_05395 PF07690 Major Facilitator Superfamily KM401_05400 PF07690 Major Facilitator Superfamily KM401_05410 PF13538 UvrD-like helicase C-terminal domain KM401_05430 PF01047 MarR family KM401_05435 PF12732 YtxH-like protein KM401_05440 PF01230 HIT domain KM401_05445 PF00005 ABC transporter KM401_05450 PF05975 Bacterial ABC transporter protein EcsB KM401_05455 PF12787 EcsC protein family KM401_05465 PF00440 Bacterial regulatory proteins, tetR family KM401_05465 PF17934 Tetracyclin repressor-like, C-terminal domain KM401_05475 PF03703 Bacterial PH domain KM401_05525 PF03703 Bacterial PH domain KM401_05530 PF03703 Bacterial PH domain KM401_05535 PF03992 Antibiotic biosynthesis monooxygenase KM401_05540 PF00905 Penicillin binding protein transpeptidase domain KM401_05540 PF00912 Transglycosylase KM401_05545 PF01208 Uroporphyrinogen decarboxylase (URO-D) KM401_05550 PF00762 Ferrochelatase KM401_05555 PF01593 Flavin containing amine oxidoreductase KM401_05580 PF03965 Penicillinase repressor KM401_05590 PF17932 Tetracyclin repressor-like, C-terminal domain KM401_05590 PF00440 Bacterial regulatory proteins, tetR family KM401_05620 PF00356 Bacterial regulatory proteins, lacI family KM401_05625 PF14149 YhfH-like protein KM401_05630 PF12706 Beta-lactamase superfamily domain KM401_05635 PF03099 Biotin/lipoate A/B protein ligase family KM401_05635 PF10437 Bacterial lipoate protein ligase C-terminus KM401_05645 PF00501 AMP-binding enzyme KM401_05645 PF13193 AMP-binding enzyme C-terminal domain KM401_05655 PF01520 N-acetylmuramoyl-L-alanine amidase KM401_05655 PF00395 S-layer homology domain KM401_05660 PF05593 RHS Repeat KM401_05675 PF05593 RHS Repeat KM401_05715 PF01966 HD domain KM401_05725 PF04542 Sigma-70 region 2 KM401_05725 PF08281 Sigma-70, region 4 KM401_05730 PF06445 GyrI-like small molecule binding domain KM401_05730 PF12833 Helix-turn-helix domain KM401_05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_05745 PF00512 His Kinase A (phospho-acceptor) domain KM401_05750 PF00072 Response regulator receiver domain KM401_05750 PF00486 Transcriptional regulatory protein, C terminal KM401_05775 PF01435 Peptidase family M48 KM401_05775 PF16491 CAAX prenyl protease N-terminal, five membrane helices KM401_05780 PF02743 Cache domain KM401_05780 PF00672 HAMP domain KM401_05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_05785 PF00892 EamA-like transporter family KM401_05790 PF00395 S-layer homology domain KM401_05790 PF03424 Carbohydrate binding domain (family 17/28) KM401_05790 PF00150 Cellulase (glycosyl hydrolase family 5) KM401_05800 PF00395 S-layer homology domain KM401_05805 PF01274 Malate synthase KM401_05810 PF00463 Isocitrate lyase family KM401_05820 PF00313 'Cold-shock' DNA-binding domain KM401_05835 PF06338 ComK protein KM401_05840 PF09335 SNARE associated Golgi protein KM401_05845 PF10502 Signal peptidase, peptidase S26 KM401_05850 PF12705 PD-(D/E)XK nuclease superfamily KM401_05850 PF13361 UvrD-like helicase C-terminal domain KM401_05855 PF12705 PD-(D/E)XK nuclease superfamily KM401_05855 PF00580 UvrD/REP helicase N-terminal domain KM401_05855 PF13361 UvrD-like helicase C-terminal domain KM401_05865 PF10676 Spore germination protein gerPA/gerPF KM401_05870 PF10970 Spore germination protein GerPE KM401_05880 PF10737 Spore germination protein GerPC KM401_05885 PF10803 Spore germination GerPB KM401_05890 PF10676 Spore germination protein gerPA/gerPF KM401_05900 PF01557 Fumarylacetoacetate (FAA) hydrolase family KM401_05910 PF00202 Aminotransferase class-III KM401_05915 PF07457 Protein of unknown function (DUF1516) KM401_05925 PF00733 Asparagine synthase KM401_05925 PF13537 Glutamine amidotransferase domain KM401_05930 PF00762 Ferrochelatase KM401_05935 PF00199 Catalase KM401_05935 PF06628 Catalase-related immune-responsive KM401_05940 PF00909 Ammonium Transporter Family KM401_05945 PF00128 Alpha amylase, catalytic domain KM401_05955 PF04461 Protein of unknown function (DUF520) KM401_05960 PF17783 CvfB-like winged helix domain KM401_05960 PF13509 S1 domain KM401_05970 PF00639 PPIC-type PPIASE domain KM401_05980 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_05980 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_05985 PF12758 Protein of unknown function (DUF3813) KM401_06000 PF14168 YjzC-like protein KM401_06005 PF00004 ATPase family associated with various cellular activities (AAA) KM401_06005 PF07724 AAA domain (Cdc48 subfamily) KM401_06005 PF17871 AAA lid domain KM401_06005 PF02861 Clp amino terminal domain, pathogenicity island component KM401_06005 PF10431 C-terminal, D2-small domain, of ClpB protein KM401_06025 PF10815 ComZ KM401_06030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM401_06030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM401_06035 PF02801 Beta-ketoacyl synthase, C-terminal domain KM401_06035 PF00109 Beta-ketoacyl synthase, N-terminal domain KM401_06040 PF10026 Predicted Zn-dependent protease (DUF2268) KM401_06045 PF12227 Protein of unknown function (DUF3603) KM401_06050 PF00579 tRNA synthetases class I (W and Y) KM401_06060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_06065 PF00528 Binding-protein-dependent transport system inner membrane component KM401_06070 PF00528 Binding-protein-dependent transport system inner membrane component KM401_06070 PF12911 N-terminal TM domain of oligopeptide transport permease C KM401_06075 PF00005 ABC transporter KM401_06075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_06080 PF00005 ABC transporter KM401_06080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_06085 PF01554 MatE KM401_06090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_06100 PF03960 ArsC family KM401_06105 PF03741 Integral membrane protein TerC family KM401_06110 PF05389 Negative regulator of genetic competence (MecA) KM401_06115 PF13091 PLD-like domain KM401_06115 PF13396 Phospholipase_D-nuclease N-terminal KM401_06125 PF08439 Oligopeptidase F KM401_06125 PF01432 Peptidase family M3 KM401_06140 PF01152 Bacterial-like globin KM401_06145 PF01928 CYTH domain KM401_06155 PF04607 Region found in RelA / SpoT proteins KM401_06160 PF01513 ATP-NAD kinase KM401_06165 PF00849 RNA pseudouridylate synthase KM401_06175 PF00149 Calcineurin-like phosphoesterase KM401_06185 PF00535 Glycosyl transferase family 2 KM401_06190 PF08241 Methyltransferase domain KM401_06195 PF05711 Macrocin-O-methyltransferase (TylF) KM401_06205 PF13181 Tetratricopeptide repeat KM401_06205 PF00535 Glycosyl transferase family 2 KM401_06225 PF00483 Nucleotidyl transferase KM401_06230 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KM401_06235 PF16363 GDP-mannose 4,6 dehydratase KM401_06240 PF04321 RmlD substrate binding domain KM401_06260 PF07098 Protein of unknown function (DUF1360) KM401_06280 PF00580 UvrD/REP helicase N-terminal domain KM401_06280 PF13361 UvrD-like helicase C-terminal domain KM401_06285 PF13673 Acetyltransferase (GNAT) domain KM401_06295 PF00756 Putative esterase KM401_06310 PF02368 Bacterial Ig-like domain (group 2) KM401_06315 PF00474 Sodium:solute symporter family KM401_06320 PF04715 Anthranilate synthase component I, N terminal region KM401_06320 PF00425 chorismate binding enzyme KM401_06325 PF00117 Glutamine amidotransferase class-I KM401_06325 PF02885 Glycosyl transferase family, helical bundle domain KM401_06325 PF00591 Glycosyl transferase family, a/b domain KM401_06330 PF02885 Glycosyl transferase family, helical bundle domain KM401_06330 PF00591 Glycosyl transferase family, a/b domain KM401_06335 PF00218 Indole-3-glycerol phosphate synthase KM401_06340 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KM401_06345 PF00291 Pyridoxal-phosphate dependent enzyme KM401_06350 PF00290 Tryptophan synthase alpha chain KM401_06360 PF02652 L-lactate permease KM401_06365 PF10042 Uncharacterized conserved protein (DUF2278) KM401_06390 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_06390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM401_06420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM401_06420 PF00364 Biotin-requiring enzyme KM401_06420 PF02817 e3 binding domain KM401_06425 PF02779 Transketolase, pyrimidine binding domain KM401_06425 PF00676 Dehydrogenase E1 component KM401_06425 PF16870 2-oxoglutarate dehydrogenase C-terminal KM401_06430 PF01381 Helix-turn-helix KM401_06490 PF13649 Methyltransferase domain KM401_06500 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_06500 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_06510 PF12389 Camelysin metallo-endopeptidase KM401_06520 PF12389 Camelysin metallo-endopeptidase KM401_06525 PF08671 Anti-repressor SinI KM401_06525 PF01381 Helix-turn-helix KM401_06535 PF05547 Immune inhibitor A peptidase M6 KM401_06540 PF00171 Aldehyde dehydrogenase family KM401_06545 PF00005 ABC transporter KM401_06545 PF08402 TOBE domain KM401_06550 PF00528 Binding-protein-dependent transport system inner membrane component KM401_06555 PF00528 Binding-protein-dependent transport system inner membrane component KM401_06560 PF13416 Bacterial extracellular solute-binding protein KM401_06570 PF03176 MMPL family KM401_06580 PF00849 RNA pseudouridylate synthase KM401_06580 PF01479 S4 domain KM401_06590 PF00188 Cysteine-rich secretory protein family KM401_06595 PF13183 4Fe-4S dicluster domain KM401_06595 PF02754 Cysteine-rich domain KM401_06600 PF01565 FAD binding domain KM401_06600 PF02913 FAD linked oxidases, C-terminal domain KM401_06605 PF05651 Putative sugar diacid recognition KM401_06605 PF13556 PucR C-terminal helix-turn-helix domain KM401_06605 PF17853 GGDEF-like domain KM401_06615 PF00486 Transcriptional regulatory protein, C terminal KM401_06615 PF00072 Response regulator receiver domain KM401_06620 PF00989 PAS fold KM401_06620 PF00512 His Kinase A (phospho-acceptor) domain KM401_06620 PF00672 HAMP domain KM401_06620 PF18698 Histidine kinase sensor domain KM401_06620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_06625 PF00392 Bacterial regulatory proteins, gntR family KM401_06625 PF07729 FCD domain KM401_06630 PF02754 Cysteine-rich domain KM401_06635 PF13183 4Fe-4S dicluster domain KM401_06635 PF02589 LUD domain KM401_06635 PF11870 Domain of unknown function (DUF3390) KM401_06640 PF02589 LUD domain KM401_06645 PF06750 Bacterial Peptidase A24 N-terminal domain KM401_06645 PF01478 Type IV leader peptidase family KM401_06660 PF01226 Formate/nitrite transporter KM401_06665 PF03741 Integral membrane protein TerC family KM401_06670 PF02386 Cation transport protein KM401_06675 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM401_06680 PF01575 MaoC like domain KM401_06705 PF00561 alpha/beta hydrolase fold KM401_06710 PF01266 FAD dependent oxidoreductase KM401_06715 PF02386 Cation transport protein KM401_06745 PF13419 Haloacid dehalogenase-like hydrolase KM401_06750 PF00266 Aminotransferase class-V KM401_06760 PF00455 DeoR C terminal sensor domain KM401_06760 PF08220 DeoR-like helix-turn-helix domain KM401_06780 PF04748 Divergent polysaccharide deacetylase KM401_06785 PF09388 Spo0E like sporulation regulatory protein KM401_06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_06790 PF02743 Cache domain KM401_06790 PF00512 His Kinase A (phospho-acceptor) domain KM401_06795 PF01047 MarR family KM401_06805 PF12867 DinB superfamily KM401_06810 PF13188 PAS domain KM401_06810 PF00989 PAS fold KM401_06810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_06810 PF13426 PAS domain KM401_06810 PF00512 His Kinase A (phospho-acceptor) domain KM401_06815 PF06508 Queuosine biosynthesis protein QueC KM401_06820 PF01242 6-pyruvoyl tetrahydropterin synthase KM401_06825 PF04055 Radical SAM superfamily KM401_06830 PF14489 QueF-like protein KM401_06835 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) KM401_06865 PF07972 NrdI Flavodoxin like KM401_06885 PF00268 Ribonucleotide reductase, small chain KM401_06890 PF00392 Bacterial regulatory proteins, gntR family KM401_06895 PF00005 ABC transporter KM401_06905 PF00005 ABC transporter KM401_06925 PF01037 Lrp/AsnC ligand binding domain KM401_06935 PF00857 Isochorismatase family KM401_06945 PF17676 LD-carboxypeptidase C-terminal domain KM401_06945 PF02016 LD-carboxypeptidase N-terminal domain KM401_06950 PF03060 Nitronate monooxygenase KM401_06955 PF04914 DltD protein KM401_06960 PF00550 Phosphopantetheine attachment site KM401_06965 PF03062 MBOAT, membrane-bound O-acyltransferase family KM401_06970 PF00501 AMP-binding enzyme KM401_06970 PF13193 AMP-binding enzyme C-terminal domain KM401_06980 PF07687 Peptidase dimerisation domain KM401_06980 PF01546 Peptidase family M20/M25/M40 KM401_06985 PF00258 Flavodoxin KM401_07000 PF01636 Phosphotransferase enzyme family KM401_07020 PF01554 MatE KM401_07025 PF02673 Bacitracin resistance protein BacA KM401_07040 PF01047 MarR family KM401_07050 PF00375 Sodium:dicarboxylate symporter family KM401_07055 PF02386 Cation transport protein KM401_07065 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KM401_07075 PF03698 Uncharacterised protein family (UPF0180) KM401_07090 PF01063 Amino-transferase class IV KM401_07095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM401_07095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM401_07095 PF00205 Thiamine pyrophosphate enzyme, central domain KM401_07100 PF10369 Small subunit of acetolactate synthase KM401_07100 PF01842 ACT domain KM401_07105 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KM401_07105 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KM401_07110 PF00682 HMGL-like KM401_07110 PF08502 LeuA allosteric (dimerisation) domain KM401_07115 PF00180 Isocitrate/isopropylmalate dehydrogenase KM401_07120 PF00330 Aconitase family (aconitate hydratase) KM401_07125 PF00694 Aconitase C-terminal domain KM401_07130 PF13393 Histidyl-tRNA synthetase KM401_07135 PF01634 ATP phosphoribosyltransferase KM401_07140 PF00815 Histidinol dehydrogenase KM401_07145 PF00475 Imidazoleglycerol-phosphate dehydratase KM401_07150 PF00117 Glutamine amidotransferase class-I KM401_07155 PF00977 Histidine biosynthesis protein KM401_07160 PF00977 Histidine biosynthesis protein KM401_07165 PF01502 Phosphoribosyl-AMP cyclohydrolase KM401_07170 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KM401_07175 PF02811 PHP domain KM401_07185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KM401_07185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KM401_07190 PF01066 CDP-alcohol phosphatidyltransferase KM401_07195 PF00884 Sulfatase KM401_07205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KM401_07205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KM401_07215 PF01507 Phosphoadenosine phosphosulfate reductase family KM401_07220 PF01747 ATP-sulfurylase KM401_07220 PF14306 PUA-like domain KM401_07230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KM401_07230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KM401_07240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM401_07245 PF01903 CbiX KM401_07255 PF00209 Sodium:neurotransmitter symporter family KM401_07265 PF00375 Sodium:dicarboxylate symporter family KM401_07275 PF03553 Na+/H+ antiporter family KM401_07290 PF09922 Cell wall-active antibiotics response 4TMS YvqF KM401_07295 PF07730 Histidine kinase KM401_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_07295 PF00672 HAMP domain KM401_07300 PF00196 Bacterial regulatory proteins, luxR family KM401_07300 PF00072 Response regulator receiver domain KM401_07310 PF05525 Branched-chain amino acid transport protein KM401_07320 PF08241 Methyltransferase domain KM401_07345 PF00970 Oxidoreductase FAD-binding domain KM401_07345 PF00042 Globin KM401_07345 PF00175 Oxidoreductase NAD-binding domain KM401_07360 PF01925 Sulfite exporter TauE/SafE KM401_07365 PF01384 Phosphate transporter family KM401_07370 PF01865 Protein of unknown function DUF47 KM401_07375 PF00912 Transglycosylase KM401_07375 PF00905 Penicillin binding protein transpeptidase domain KM401_07390 PF00989 PAS fold KM401_07390 PF00512 His Kinase A (phospho-acceptor) domain KM401_07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_07395 PF01904 Protein of unknown function DUF72 KM401_07405 PF00589 Phage integrase family KM401_07415 PF01048 Phosphorylase superfamily KM401_07430 PF09924 Uncharacterised conserved protein (DUF2156) KM401_07430 PF03706 Lysylphosphatidylglycerol synthase TM region KM401_07445 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KM401_07445 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KM401_07450 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_07450 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_07455 PF07670 Nucleoside recognition KM401_07460 PF07670 Nucleoside recognition KM401_07465 PF00849 RNA pseudouridylate synthase KM401_07465 PF01479 S4 domain KM401_07470 PF00578 AhpC/TSA family KM401_07475 PF05140 ResB-like family KM401_07480 PF01578 Cytochrome C assembly protein KM401_07485 PF00072 Response regulator receiver domain KM401_07485 PF00486 Transcriptional regulatory protein, C terminal KM401_07490 PF00512 His Kinase A (phospho-acceptor) domain KM401_07490 PF18698 Histidine kinase sensor domain KM401_07490 PF00989 PAS fold KM401_07490 PF00672 HAMP domain KM401_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_07495 PF01923 Cobalamin adenosyltransferase KM401_07510 PF12822 ECF transporter, substrate-specific component KM401_07520 PF14493 Helix-turn-helix domain KM401_07525 PF00270 DEAD/DEAH box helicase KM401_07525 PF00271 Helicase conserved C-terminal domain KM401_07530 PF02517 CPBP intramembrane metalloprotease KM401_07545 PF02310 B12 binding domain KM401_07545 PF02607 B12 binding domain KM401_07545 PF13411 MerR HTH family regulatory protein KM401_07550 PF05389 Negative regulator of genetic competence (MecA) KM401_07555 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KM401_07555 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KM401_07580 PF00710 Asparaginase, N-terminal KM401_07580 PF17763 Glutaminase/Asparaginase C-terminal domain KM401_07590 PF02224 Cytidylate kinase KM401_07595 PF00575 S1 RNA binding domain KM401_07600 PF01070 FMN-dependent dehydrogenase KM401_07605 PF14140 YpzI-like protein KM401_07615 PF14045 YIEGIA protein KM401_07625 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KM401_07625 PF01926 50S ribosome-binding GTPase KM401_07630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KM401_07630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KM401_07640 PF10966 Protein of unknown function (DUF2768) KM401_07650 PF09547 Stage IV sporulation protein A (spore_IV_A) KM401_07655 PF00216 Bacterial DNA-binding protein KM401_07660 PF01227 GTP cyclohydrolase I KM401_07665 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 KM401_07670 PF01209 ubiE/COQ5 methyltransferase family KM401_07675 PF00348 Polyprenyl synthetase KM401_07680 PF00334 Nucleoside diphosphate kinase KM401_07685 PF01264 Chorismate synthase KM401_07690 PF01761 3-dehydroquinate synthase KM401_07695 PF00155 Aminotransferase class I and II KM401_07705 PF08858 IDEAL domain KM401_07705 PF08864 UPF0302 domain KM401_07710 PF10673 Protein of unknown function (DUF2487) KM401_07715 PF00355 Rieske [2Fe-2S] domain KM401_07720 PF00033 Cytochrome b/b6/petB KM401_07725 PF00032 Cytochrome b(C-terminal)/b6/petD KM401_07725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KM401_07730 PF07187 Protein of unknown function (DUF1405) KM401_07740 PF09577 Sporulation protein YpjB (SpoYpjB) KM401_07745 PF04298 Putative neutral zinc metallopeptidase KM401_07755 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_07755 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_07760 PF03819 MazG nucleotide pyrophosphohydrolase domain KM401_07765 PF05173 Dihydrodipicolinate reductase, C-terminus KM401_07765 PF01113 Dihydrodipicolinate reductase, N-terminus KM401_07770 PF02142 MGS-like domain KM401_07775 PF02585 GlcNAc-PI de-N-acetylase KM401_07780 PF00534 Glycosyl transferases group 1 KM401_07780 PF13439 Glycosyltransferase Family 4 KM401_07785 PF01743 Poly A polymerase head domain KM401_07785 PF12627 Probable RNA and SrmB- binding site of polymerase A KM401_07785 PF13735 tRNA nucleotidyltransferase domain 2 putative KM401_07790 PF02237 Biotin protein ligase C terminal domain KM401_07790 PF03099 Biotin/lipoate A/B protein ligase family KM401_07790 PF08279 HTH domain KM401_07800 PF02548 Ketopantoate hydroxymethyltransferase KM401_07805 PF02569 Pantoate-beta-alanine ligase KM401_07810 PF02261 Aspartate decarboxylase KM401_07815 PF13307 Helicase C-terminal domain KM401_07815 PF04851 Type III restriction enzyme, res subunit KM401_07815 PF00929 Exonuclease KM401_07820 PF14084 Protein of unknown function (DUF4264) KM401_07830 PF00155 Aminotransferase class I and II KM401_07835 PF07261 Replication initiation and membrane attachment KM401_07840 PF00633 Helix-hairpin-helix motif KM401_07840 PF00730 HhH-GPD superfamily base excision DNA repair protein KM401_07840 PF10576 Iron-sulfur binding domain of endonuclease III KM401_07855 PF03838 Recombination protein U KM401_07860 PF10720 Protein of unknown function (DUF2515) KM401_07895 PF06908 YspA SLOG family KM401_07900 PF05103 DivIVA protein KM401_07910 PF02926 THUMP domain KM401_07910 PF01170 Putative RNA methylase family UPF0020 KM401_07920 PF13307 Helicase C-terminal domain KM401_07925 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KM401_07935 PF01636 Phosphotransferase enzyme family KM401_07940 PF00557 Metallopeptidase family M24 KM401_07945 PF00156 Phosphoribosyl transferase domain KM401_07950 PF00860 Permease family KM401_07955 PF04235 Protein of unknown function (DUF418) KM401_07960 PF00350 Dynamin family KM401_07970 PF00583 Acetyltransferase (GNAT) family KM401_07975 PF10752 Protein of unknown function (DUF2533) KM401_07980 PF00581 Rhodanese-like domain KM401_08015 PF00689 Cation transporting ATPase, C-terminus KM401_08015 PF00690 Cation transporter/ATPase, N-terminus KM401_08020 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KM401_08020 PF01367 5'-3' exonuclease, C-terminal SAM fold KM401_08045 PF02397 Bacterial sugar transferase KM401_08060 PF00535 Glycosyl transferase family 2 KM401_08065 PF13439 Glycosyltransferase Family 4 KM401_08065 PF00534 Glycosyl transferases group 1 KM401_08080 PF18014 Acetyltransferase (GNAT) domain KM401_08080 PF13673 Acetyltransferase (GNAT) domain KM401_08100 PF13456 Reverse transcriptase-like KM401_08105 PF01263 Aldose 1-epimerase KM401_08130 PF00313 'Cold-shock' DNA-binding domain KM401_08140 PF01810 LysE type translocator KM401_08155 PF04341 Protein of unknown function, DUF485 KM401_08160 PF00474 Sodium:solute symporter family KM401_08165 PF00202 Aminotransferase class-III KM401_08175 PF00999 Sodium/hydrogen exchanger family KM401_08180 PF00753 Metallo-beta-lactamase superfamily KM401_08180 PF17770 Ribonuclease J C-terminal domain KM401_08180 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KM401_08185 PF13411 MerR HTH family regulatory protein KM401_08185 PF06445 GyrI-like small molecule binding domain KM401_08195 PF04239 Protein of unknown function (DUF421) KM401_08200 PF02698 DUF218 domain KM401_08210 PF00881 Nitroreductase family KM401_08255 PF17209 Hfq protein KM401_08265 PF01618 MotA/TolQ/ExbB proton channel family KM401_08270 PF13677 Membrane MotB of proton-channel complex MotA/MotB KM401_08270 PF00691 OmpA family KM401_08275 PF00072 Response regulator receiver domain KM401_08280 PF01584 CheW-like domain KM401_08280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_08280 PF01627 Hpt domain KM401_08280 PF07194 P2 response regulator binding domain KM401_08280 PF02895 Signal transducing histidine kinase, homodimeric domain KM401_08285 PF02895 Signal transducing histidine kinase, homodimeric domain KM401_08285 PF01584 CheW-like domain KM401_08285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_08285 PF01627 Hpt domain KM401_08285 PF07194 P2 response regulator binding domain KM401_08290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KM401_08290 PF04509 CheC-like family KM401_08305 PF01739 CheR methyltransferase, SAM binding domain KM401_08305 PF03705 CheR methyltransferase, all-alpha domain KM401_08325 PF00460 Flagella basal body rod protein KM401_08325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM401_08350 PF00460 Flagella basal body rod protein KM401_08355 PF00460 Flagella basal body rod protein KM401_08355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM401_08360 PF02049 Flagellar hook-basal body complex protein FliE KM401_08370 PF14842 FliG N-terminal domain KM401_08370 PF14841 FliG middle domain KM401_08370 PF01706 FliG C-terminal domain KM401_08380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM401_08380 PF02874 ATP synthase alpha/beta family, beta-barrel domain KM401_08380 PF18269 T3SS EscN ATPase C-terminal domain KM401_08405 PF07559 Flagellar basal body protein FlaE KM401_08405 PF00460 Flagella basal body rod protein KM401_08405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM401_08420 PF01584 CheW-like domain KM401_08420 PF00072 Response regulator receiver domain KM401_08430 PF00535 Glycosyl transferase family 2 KM401_08465 PF00669 Bacterial flagellin N-terminal helical region KM401_08465 PF00700 Bacterial flagellin C-terminal helical region KM401_08470 PF01464 Transglycosylase SLT domain KM401_08485 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KM401_08485 PF04509 CheC-like family KM401_08495 PF00813 FliP family KM401_08500 PF01313 Bacterial export proteins, family 3 KM401_08510 PF01312 FlhB HrpN YscU SpaS Family KM401_08515 PF00771 FHIPEP family KM401_08520 PF00448 SRP54-type protein, GTPase domain KM401_08525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM401_08525 PF00460 Flagella basal body rod protein KM401_08530 PF02272 DHHA1 domain KM401_08530 PF01411 tRNA synthetases class II (A) KM401_08530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM401_08555 PF00440 Bacterial regulatory proteins, tetR family KM401_08555 PF17932 Tetracyclin repressor-like, C-terminal domain KM401_08560 PF17329 Family of unknown function (DUF5367) KM401_08575 PF03992 Antibiotic biosynthesis monooxygenase KM401_08580 PF08141 Small acid-soluble spore protein H family KM401_08600 PF03466 LysR substrate binding domain KM401_08600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_08605 PF08402 TOBE domain KM401_08605 PF00005 ABC transporter KM401_08615 PF00528 Binding-protein-dependent transport system inner membrane component KM401_08620 PF00753 Metallo-beta-lactamase superfamily KM401_08620 PF12706 Beta-lactamase superfamily domain KM401_08630 PF10787 Uncharacterised protein from bacillus cereus group KM401_08645 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_08645 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_08655 PF00300 Histidine phosphatase superfamily (branch 1) KM401_08685 PF00733 Asparagine synthase KM401_08685 PF13537 Glutamine amidotransferase domain KM401_08705 PF01545 Cation efflux family KM401_08705 PF16916 Dimerisation domain of Zinc Transporter KM401_08715 PF00392 Bacterial regulatory proteins, gntR family KM401_08715 PF07729 FCD domain KM401_08720 PF00892 EamA-like transporter family KM401_08725 PF02492 CobW/HypB/UreG, nucleotide-binding domain KM401_08725 PF07683 Cobalamin synthesis protein cobW C-terminal domain KM401_08730 PF03773 Predicted permease KM401_08740 PF00535 Glycosyl transferase family 2 KM401_08745 PF03553 Na+/H+ antiporter family KM401_08750 PF00206 Lyase KM401_08750 PF10415 Fumarase C C-terminus KM401_08775 PF03575 Peptidase family S51 KM401_08795 PF02683 Cytochrome C biogenesis protein transmembrane region KM401_08800 PF00578 AhpC/TSA family KM401_08820 PF00291 Pyridoxal-phosphate dependent enzyme KM401_08825 PF04286 Protein of unknown function (DUF445) KM401_08850 PF00196 Bacterial regulatory proteins, luxR family KM401_08850 PF00072 Response regulator receiver domain KM401_08855 PF13185 GAF domain KM401_08855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_08855 PF07730 Histidine kinase KM401_08855 PF13492 GAF domain KM401_08860 PF00005 ABC transporter KM401_08875 PF13091 PLD-like domain KM401_08880 PF00696 Amino acid kinase family KM401_08885 PF00375 Sodium:dicarboxylate symporter family KM401_08890 PF00206 Lyase KM401_08890 PF10415 Fumarase C C-terminus KM401_08895 PF03949 Malic enzyme, NAD binding domain KM401_08895 PF00390 Malic enzyme, N-terminal domain KM401_08900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_08905 PF00072 Response regulator receiver domain KM401_08905 PF08664 YcbB domain KM401_08910 PF00271 Helicase conserved C-terminal domain KM401_08910 PF00176 SNF2 family N-terminal domain KM401_08910 PF04434 SWIM zinc finger KM401_08925 PF03590 Aspartate-ammonia ligase KM401_08945 PF00696 Amino acid kinase family KM401_08945 PF13840 ACT domain KM401_08955 PF13761 Domain of unknown function (DUF4166) KM401_08960 PF14158 YndJ-like protein KM401_08965 PF00293 NUDIX domain KM401_08970 PF00395 S-layer homology domain KM401_08970 PF13205 Bacterial Ig-like domain KM401_08970 PF02368 Bacterial Ig-like domain (group 2) KM401_08980 PF07690 Major Facilitator Superfamily KM401_08995 PF02554 Carbon starvation protein CstA KM401_09000 PF03976 Polyphosphate kinase 2 (PPK2) KM401_09010 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM401_09010 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM401_09020 PF01926 50S ribosome-binding GTPase KM401_09020 PF16360 GTP-binding GTPase Middle Region KM401_09020 PF13167 GTP-binding GTPase N-terminal KM401_09030 PF07690 Major Facilitator Superfamily KM401_09035 PF00291 Pyridoxal-phosphate dependent enzyme KM401_09050 PF01943 Polysaccharide biosynthesis protein KM401_09050 PF14667 Polysaccharide biosynthesis C-terminal domain KM401_09055 PF00209 Sodium:neurotransmitter symporter family KM401_09060 PF00457 Glycosyl hydrolases family 11 KM401_09060 PF01522 Polysaccharide deacetylase KM401_09060 PF03422 Carbohydrate binding module (family 6) KM401_09070 PF04239 Protein of unknown function (DUF421) KM401_09085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KM401_09085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM401_09100 PF01625 Peptide methionine sulfoxide reductase KM401_09110 PF01063 Amino-transferase class IV KM401_09115 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM401_09115 PF00205 Thiamine pyrophosphate enzyme, central domain KM401_09115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM401_09120 PF10369 Small subunit of acetolactate synthase KM401_09125 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KM401_09125 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KM401_09130 PF00920 Dehydratase family KM401_09135 PF00291 Pyridoxal-phosphate dependent enzyme KM401_09135 PF00585 C-terminal regulatory domain of Threonine dehydratase KM401_09145 PF09587 Bacterial capsule synthesis protein PGA_cap KM401_09160 PF07690 Major Facilitator Superfamily KM401_09165 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KM401_09175 PF04397 LytTr DNA-binding domain KM401_09175 PF00072 Response regulator receiver domain KM401_09180 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KM401_09180 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KM401_09195 PF01979 Amidohydrolase family KM401_09200 PF13026 Protein of unknown function (DUF3887) KM401_09200 PF12146 Serine aminopeptidase, S33 KM401_09230 PF04055 Radical SAM superfamily KM401_09230 PF13186 Iron-sulfur cluster-binding domain KM401_09235 PF13302 Acetyltransferase (GNAT) domain KM401_09240 PF00486 Transcriptional regulatory protein, C terminal KM401_09240 PF00072 Response regulator receiver domain KM401_09255 PF01566 Natural resistance-associated macrophage protein KM401_09260 PF17773 UPF0176 acylphosphatase like domain KM401_09260 PF00581 Rhodanese-like domain KM401_09260 PF12368 Rhodanase C-terminal KM401_09270 PF02558 Ketopantoate reductase PanE/ApbA KM401_09270 PF08546 Ketopantoate reductase PanE/ApbA C terminal KM401_09285 PF05791 Bacillus haemolytic enterotoxin (HBL) KM401_09300 PF04198 Putative sugar-binding domain KM401_09305 PF01791 DeoC/LacD family aldolase KM401_09310 PF07662 Na+ dependent nucleoside transporter C-terminus KM401_09310 PF01773 Na+ dependent nucleoside transporter N-terminus KM401_09315 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KM401_09315 PF02885 Glycosyl transferase family, helical bundle domain KM401_09315 PF00591 Glycosyl transferase family, a/b domain KM401_09320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM401_09330 PF05979 Bacterial protein of unknown function (DUF896) KM401_09350 PF00557 Metallopeptidase family M24 KM401_09350 PF05195 Aminopeptidase P, N-terminal domain KM401_09355 PF07732 Multicopper oxidase KM401_09355 PF07731 Multicopper oxidase KM401_09360 PF01551 Peptidase family M23 KM401_09370 PF01751 Toprim domain KM401_09370 PF13342 C-terminal repeat of topoisomerase KM401_09370 PF01396 Topoisomerase DNA binding C4 zinc finger KM401_09370 PF01131 DNA topoisomerase KM401_09385 PF02525 Flavodoxin-like fold KM401_09400 PF05425 Copper resistance protein D KM401_09400 PF13115 YtkA-like KM401_09400 PF04234 CopC domain KM401_09405 PF07987 Domain of unkown function (DUF1775) KM401_09415 PF00892 EamA-like transporter family KM401_09420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_09420 PF03466 LysR substrate binding domain KM401_09425 PF02082 Transcriptional regulator KM401_09430 PF01323 DSBA-like thioredoxin domain KM401_09435 PF00881 Nitroreductase family KM401_09440 PF01425 Amidase KM401_09445 PF01594 AI-2E family transporter KM401_09450 PF00056 lactate/malate dehydrogenase, NAD binding domain KM401_09450 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM401_09455 PF01593 Flavin containing amine oxidoreductase KM401_09460 PF07683 Cobalamin synthesis protein cobW C-terminal domain KM401_09460 PF02492 CobW/HypB/UreG, nucleotide-binding domain KM401_09475 PF13193 AMP-binding enzyme C-terminal domain KM401_09475 PF00501 AMP-binding enzyme KM401_09480 PF01575 MaoC like domain KM401_09485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM401_09485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM401_09495 PF12399 Branched-chain amino acid ATP-binding cassette transporter KM401_09495 PF00005 ABC transporter KM401_09500 PF00005 ABC transporter KM401_09505 PF02653 Branched-chain amino acid transport system / permease component KM401_09515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_09515 PF03466 LysR substrate binding domain KM401_09525 PF14552 Tautomerase enzyme KM401_09535 PF01047 MarR family KM401_09545 PF01654 Cytochrome bd terminal oxidase subunit I KM401_09550 PF02322 Cytochrome bd terminal oxidase subunit II KM401_09555 PF00664 ABC transporter transmembrane region KM401_09555 PF00005 ABC transporter KM401_09560 PF00005 ABC transporter KM401_09560 PF00664 ABC transporter transmembrane region KM401_09575 PF17676 LD-carboxypeptidase C-terminal domain KM401_09575 PF02016 LD-carboxypeptidase N-terminal domain KM401_09580 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_09580 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_09595 PF01476 LysM domain KM401_09595 PF00877 NlpC/P60 family KM401_09610 PF00486 Transcriptional regulatory protein, C terminal KM401_09610 PF00072 Response regulator receiver domain KM401_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_09615 PF00512 His Kinase A (phospho-acceptor) domain KM401_09615 PF16736 Single Cache-like KM401_09615 PF00989 PAS fold KM401_09625 PF00106 short chain dehydrogenase KM401_09635 PF04439 Streptomycin adenylyltransferase KM401_09640 PF01522 Polysaccharide deacetylase KM401_09660 PF03447 Homoserine dehydrogenase, NAD binding domain KM401_09660 PF00742 Homoserine dehydrogenase KM401_09660 PF01842 ACT domain KM401_09665 PF00291 Pyridoxal-phosphate dependent enzyme KM401_09670 PF08544 GHMP kinases C terminal KM401_09670 PF00288 GHMP kinases N terminal domain KM401_09685 PF03816 Cell envelope-related transcriptional attenuator domain KM401_09695 PF00486 Transcriptional regulatory protein, C terminal KM401_09695 PF00072 Response regulator receiver domain KM401_09700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_09700 PF00512 His Kinase A (phospho-acceptor) domain KM401_09700 PF00989 PAS fold KM401_09700 PF16736 Single Cache-like KM401_09705 PF01522 Polysaccharide deacetylase KM401_09715 PF02308 MgtC family KM401_09720 PF00583 Acetyltransferase (GNAT) family KM401_09725 PF04183 IucA / IucC family KM401_09725 PF06276 Ferric iron reductase FhuF-like transporter KM401_09730 PF04183 IucA / IucC family KM401_09730 PF06276 Ferric iron reductase FhuF-like transporter KM401_09735 PF13193 AMP-binding enzyme C-terminal domain KM401_09735 PF00501 AMP-binding enzyme KM401_09750 PF01261 Xylose isomerase-like TIM barrel KM401_09755 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM401_09765 PF01810 LysE type translocator KM401_09775 PF01734 Patatin-like phospholipase KM401_09800 PF13344 Haloacid dehalogenase-like hydrolase KM401_09800 PF00293 NUDIX domain KM401_09805 PF02540 NAD synthase KM401_09815 PF18277 AbrB C-terminal domain KM401_09815 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KM401_09820 PF00082 Subtilase family KM401_09825 PF01022 Bacterial regulatory protein, arsR family KM401_09830 PF00248 Aldo/keto reductase family KM401_09835 PF07690 Major Facilitator Superfamily KM401_09855 PF03193 RsgA GTPase KM401_09860 PF00672 HAMP domain KM401_09860 PF02743 Cache domain KM401_09860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_09880 PF00210 Ferritin-like domain KM401_09895 PF00296 Luciferase-like monooxygenase KM401_09905 PF01593 Flavin containing amine oxidoreductase KM401_09915 PF00248 Aldo/keto reductase family KM401_09920 PF02492 CobW/HypB/UreG, nucleotide-binding domain KM401_09920 PF07683 Cobalamin synthesis protein cobW C-terminal domain KM401_09925 PF00583 Acetyltransferase (GNAT) family KM401_09980 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment KM401_09980 PF01297 Zinc-uptake complex component A periplasmic KM401_09990 PF13460 NAD(P)H-binding KM401_09995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KM401_10000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KM401_10000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KM401_10010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_10015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_10025 PF00300 Histidine phosphatase superfamily (branch 1) KM401_10035 PF08757 CotH kinase protein KM401_10040 PF00293 NUDIX domain KM401_10045 PF09335 SNARE associated Golgi protein KM401_10050 PF01943 Polysaccharide biosynthesis protein KM401_10050 PF14667 Polysaccharide biosynthesis C-terminal domain KM401_10060 PF03773 Predicted permease KM401_10065 PF09323 Domain of unknown function (DUF1980) KM401_10070 PF03061 Thioesterase superfamily KM401_10080 PF13091 PLD-like domain KM401_10080 PF13396 Phospholipase_D-nuclease N-terminal KM401_10095 PF13460 NAD(P)H-binding KM401_10100 PF04306 Protein of unknown function (DUF456) KM401_10105 PF01595 Cyclin M transmembrane N-terminal domain KM401_10105 PF03471 Transporter associated domain KM401_10105 PF00571 CBS domain KM401_10120 PF05525 Branched-chain amino acid transport protein KM401_10125 PF01588 Putative tRNA binding domain KM401_10145 PF07454 Stage II sporulation protein P (SpoIIP) KM401_10155 PF02557 D-alanyl-D-alanine carboxypeptidase KM401_10165 PF01425 Amidase KM401_10170 PF07690 Major Facilitator Superfamily KM401_10180 PF01145 SPFH domain / Band 7 family KM401_10185 PF00300 Histidine phosphatase superfamily (branch 1) KM401_10200 PF00842 Alanine racemase, C-terminal domain KM401_10200 PF01168 Alanine racemase, N-terminal domain KM401_10205 PF13847 Methyltransferase domain KM401_10220 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KM401_10225 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_10225 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_10255 PF00583 Acetyltransferase (GNAT) family KM401_10305 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KM401_10330 PF01209 ubiE/COQ5 methyltransferase family KM401_10335 PF01268 Formate--tetrahydrofolate ligase KM401_10345 PF00271 Helicase conserved C-terminal domain KM401_10345 PF00270 DEAD/DEAH box helicase KM401_10355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_10365 PF00107 Zinc-binding dehydrogenase KM401_10365 PF08240 Alcohol dehydrogenase GroES-like domain KM401_10370 PF08281 Sigma-70, region 4 KM401_10370 PF04542 Sigma-70 region 2 KM401_10395 PF00255 Glutathione peroxidase KM401_10400 PF11992 Domain of unknown function (DUF3488) KM401_10400 PF13559 Domain of unknown function (DUF4129) KM401_10400 PF01841 Transglutaminase-like superfamily KM401_10405 PF01882 Protein of unknown function DUF58 KM401_10410 PF17863 AAA lid domain KM401_10410 PF07726 ATPase family associated with various cellular activities (AAA) KM401_10425 PF00384 Molybdopterin oxidoreductase KM401_10425 PF01568 Molydopterin dinucleotide binding domain KM401_10425 PF14710 Respiratory nitrate reductase alpha N-terminal KM401_10430 PF14711 Respiratory nitrate reductase beta C-terminal KM401_10430 PF13247 4Fe-4S dicluster domain KM401_10435 PF02613 Nitrate reductase delta subunit KM401_10440 PF02665 Nitrate reductase gamma subunit KM401_10445 PF00155 Aminotransferase class I and II KM401_10445 PF00392 Bacterial regulatory proteins, gntR family KM401_10450 PF00005 ABC transporter KM401_10460 PF00325 Bacterial regulatory proteins, crp family KM401_10460 PF00027 Cyclic nucleotide-binding domain KM401_10465 PF06463 Molybdenum Cofactor Synthesis C KM401_10465 PF04055 Radical SAM superfamily KM401_10470 PF00899 ThiF family KM401_10475 PF00994 Probable molybdopterin binding domain KM401_10475 PF03454 MoeA C-terminal region (domain IV) KM401_10475 PF03453 MoeA N-terminal region (domain I and II) KM401_10480 PF02391 MoaE protein KM401_10490 PF07690 Major Facilitator Superfamily KM401_10510 PF01903 CbiX KM401_10515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM401_10520 PF00355 Rieske [2Fe-2S] domain KM401_10525 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_10525 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KM401_10525 PF18267 Rubredoxin NAD+ reductase C-terminal domain KM401_10525 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KM401_10525 PF04324 BFD-like [2Fe-2S] binding domain KM401_10530 PF01814 Hemerythrin HHE cation binding domain KM401_10530 PF04405 Domain of Unknown function (DUF542) KM401_10565 PF04232 Stage V sporulation protein S (SpoVS) KM401_10580 PF01510 N-acetylmuramoyl-L-alanine amidase KM401_10595 PF01966 HD domain KM401_10600 PF16326 ABC transporter C-terminal domain KM401_10600 PF12848 ABC transporter KM401_10600 PF00005 ABC transporter KM401_10615 PF00436 Single-strand binding protein family KM401_10620 PF00440 Bacterial regulatory proteins, tetR family KM401_10630 PF13769 Virulence factor KM401_10630 PF08712 Scaffold protein Nfu/NifU N terminal KM401_10640 PF06491 Disulphide isomerase KM401_10645 PF04445 Putative SAM-dependent methyltransferase KM401_10650 PF05746 DALR anticodon binding domain KM401_10650 PF00750 tRNA synthetases class I (R) KM401_10650 PF03485 Arginyl tRNA synthetase N terminal domain KM401_10675 PF00133 tRNA synthetases class I (I, L, M and V) KM401_10675 PF08264 Anticodon-binding domain of tRNA KM401_10695 PF00152 tRNA synthetases class II (D, K and N) KM401_10695 PF01336 OB-fold nucleic acid binding domain KM401_10715 PF01580 FtsK/SpoIIIE family KM401_10715 PF12538 DNA transporter KM401_10785 PF02595 Glycerate kinase family KM401_10790 PF00939 Sodium:sulfate symporter transmembrane region KM401_10795 PF00072 Response regulator receiver domain KM401_10795 PF00486 Transcriptional regulatory protein, C terminal KM401_10800 PF00672 HAMP domain KM401_10800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_10800 PF00512 His Kinase A (phospho-acceptor) domain KM401_10815 PF00209 Sodium:neurotransmitter symporter family KM401_10830 PF10997 Alternate to MurJ KM401_10835 PF13419 Haloacid dehalogenase-like hydrolase KM401_10845 PF00465 Iron-containing alcohol dehydrogenase KM401_10850 PF01177 Asp/Glu/Hydantoin racemase KM401_10855 PF01980 tRNA-methyltransferase O KM401_10860 PF00583 Acetyltransferase (GNAT) family KM401_10875 PF00005 ABC transporter KM401_10885 PF14005 YpjP-like protein KM401_10890 PF13419 Haloacid dehalogenase-like hydrolase KM401_10910 PF07930 D-aminopeptidase, domain B KM401_10910 PF00144 Beta-lactamase KM401_10915 PF00303 Thymidylate synthase KM401_10920 PF00186 Dihydrofolate reductase KM401_10925 PF03717 Penicillin-binding Protein dimerisation domain KM401_10925 PF05223 NTF2-like N-terminal transpeptidase domain KM401_10925 PF00905 Penicillin binding protein transpeptidase domain KM401_10930 PF02525 Flavodoxin-like fold KM401_10935 PF01553 Acyltransferase KM401_10940 PF03006 Haemolysin-III related KM401_10945 PF02416 mttA/Hcf106 family KM401_10950 PF00902 Sec-independent protein translocase protein (TatC) KM401_10960 PF02645 Uncharacterised protein, DegV family COG1307 KM401_10970 PF02630 SCO1/SenC KM401_10975 PF00011 Hsp20/alpha crystallin family KM401_10980 PF00733 Asparagine synthase KM401_10980 PF13537 Glutamine amidotransferase domain KM401_10995 PF01497 Periplasmic binding protein KM401_11000 PF01063 Amino-transferase class IV KM401_11005 PF00881 Nitroreductase family KM401_11025 PF00293 NUDIX domain KM401_11030 PF00011 Hsp20/alpha crystallin family KM401_11035 PF00924 Mechanosensitive ion channel KM401_11040 PF07730 Histidine kinase KM401_11040 PF13185 GAF domain KM401_11045 PF00072 Response regulator receiver domain KM401_11045 PF00196 Bacterial regulatory proteins, luxR family KM401_11055 PF08240 Alcohol dehydrogenase GroES-like domain KM401_11055 PF00107 Zinc-binding dehydrogenase KM401_11080 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM401_11080 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM401_11085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM401_11085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM401_11100 PF03358 NADPH-dependent FMN reductase KM401_11115 PF00571 CBS domain KM401_11115 PF00005 ABC transporter KM401_11120 PF00528 Binding-protein-dependent transport system inner membrane component KM401_11125 PF13520 Amino acid permease KM401_11155 PF01595 Cyclin M transmembrane N-terminal domain KM401_11155 PF03471 Transporter associated domain KM401_11155 PF00571 CBS domain KM401_11160 PF00171 Aldehyde dehydrogenase family KM401_11165 PF07997 Protein of unknown function (DUF1694) KM401_11170 PF09385 Histidine kinase N terminal KM401_11180 PF00202 Aminotransferase class-III KM401_11185 PF01144 Coenzyme A transferase KM401_11190 PF01144 Coenzyme A transferase KM401_11195 PF01546 Peptidase family M20/M25/M40 KM401_11195 PF07687 Peptidase dimerisation domain KM401_11200 PF00583 Acetyltransferase (GNAT) family KM401_11205 PF02954 Bacterial regulatory protein, Fis family KM401_11205 PF00158 Sigma-54 interaction domain KM401_11205 PF13426 PAS domain KM401_11210 PF12544 Lysine-2,3-aminomutase KM401_11215 PF14122 YokU-like protein, putative antitoxin KM401_11220 PF06855 YozE SAM-like fold KM401_11235 PF14162 YozD-like protein KM401_11250 PF07070 SpoOM protein KM401_11255 PF01569 PAP2 superfamily KM401_11260 PF01545 Cation efflux family KM401_11260 PF16916 Dimerisation domain of Zinc Transporter KM401_11265 PF00085 Thioredoxin KM401_11280 PF14436 Bacterial EndoU nuclease KM401_11280 PF04740 LXG domain of WXG superfamily KM401_11285 PF00150 Cellulase (glycosyl hydrolase family 5) KM401_11285 PF00395 S-layer homology domain KM401_11285 PF03424 Carbohydrate binding domain (family 17/28) KM401_11295 PF04471 Restriction endonuclease KM401_11405 PF10676 Spore germination protein gerPA/gerPF KM401_11425 PF00912 Transglycosylase KM401_11425 PF00905 Penicillin binding protein transpeptidase domain KM401_11430 PF07690 Major Facilitator Superfamily KM401_11435 PF01521 Iron-sulphur cluster biosynthesis KM401_11440 PF00285 Citrate synthase, C-terminal domain KM401_11445 PF03972 MmgE/PrpD family KM401_11455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM401_11455 PF02770 Acyl-CoA dehydrogenase, middle domain KM401_11455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM401_11460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KM401_11460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM401_11465 PF00171 Aldehyde dehydrogenase family KM401_11470 PF01810 LysE type translocator KM401_11475 PF00378 Enoyl-CoA hydratase/isomerase KM401_11485 PF10763 Protein of unknown function (DUF2584) KM401_11490 PF00149 Calcineurin-like phosphoesterase KM401_11490 PF12320 Type 5 capsule protein repressor C-terminal domain KM401_11495 PF13476 AAA domain KM401_11510 PF01022 Bacterial regulatory protein, arsR family KM401_11520 PF07690 Major Facilitator Superfamily KM401_11525 PF00106 short chain dehydrogenase KM401_11530 PF00425 chorismate binding enzyme KM401_11535 PF00501 AMP-binding enzyme KM401_11535 PF13193 AMP-binding enzyme C-terminal domain KM401_11540 PF00857 Isochorismatase family KM401_11540 PF00550 Phosphopantetheine attachment site KM401_11545 PF00668 Condensation domain KM401_11545 PF00550 Phosphopantetheine attachment site KM401_11545 PF00975 Thioesterase domain KM401_11545 PF00501 AMP-binding enzyme KM401_11545 PF13193 AMP-binding enzyme C-terminal domain KM401_11550 PF03621 MbtH-like protein KM401_11555 PF07690 Major Facilitator Superfamily KM401_11570 PF00216 Bacterial DNA-binding protein KM401_11580 PF05163 DinB family KM401_11585 PF00082 Subtilase family KM401_11590 PF01235 Sodium:alanine symporter family KM401_11605 PF16291 Domain of unknown function (DUF4937 KM401_11610 PF00849 RNA pseudouridylate synthase KM401_11610 PF01479 S4 domain KM401_11615 PF03129 Anticodon binding domain KM401_11615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM401_11615 PF02824 TGS domain KM401_11615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM401_11630 PF12146 Serine aminopeptidase, S33 KM401_11635 PF07690 Major Facilitator Superfamily KM401_11655 PF13649 Methyltransferase domain KM401_11700 PF00753 Metallo-beta-lactamase superfamily KM401_11700 PF16123 Hydroxyacylglutathione hydrolase C-terminus KM401_11710 PF03176 MMPL family KM401_11720 PF00302 Chloramphenicol acetyltransferase KM401_11735 PF00583 Acetyltransferase (GNAT) family KM401_11765 PF01593 Flavin containing amine oxidoreductase KM401_11775 PF13302 Acetyltransferase (GNAT) domain KM401_11785 PF00313 'Cold-shock' DNA-binding domain KM401_11850 PF03466 LysR substrate binding domain KM401_11850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_11855 PF02774 Semialdehyde dehydrogenase, dimerisation domain KM401_11855 PF01118 Semialdehyde dehydrogenase, NAD binding domain KM401_11870 PF03466 LysR substrate binding domain KM401_11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_11875 PF03475 3-alpha domain KM401_11875 PF03473 MOSC domain KM401_11890 PF00664 ABC transporter transmembrane region KM401_11890 PF00005 ABC transporter KM401_11895 PF00664 ABC transporter transmembrane region KM401_11895 PF00005 ABC transporter KM401_11910 PF01810 LysE type translocator KM401_11915 PF07883 Cupin domain KM401_11915 PF01381 Helix-turn-helix KM401_11940 PF00890 FAD binding domain KM401_11945 PF08281 Sigma-70, region 4 KM401_11945 PF04542 Sigma-70 region 2 KM401_11945 PF12680 SnoaL-like domain KM401_11970 PF02638 Glycosyl hydrolase-like 10 KM401_11980 PF02378 Phosphotransferase system, EIIC KM401_11990 PF03702 Anhydro-N-acetylmuramic acid kinase KM401_11995 PF01869 BadF/BadG/BcrA/BcrD ATPase family KM401_12000 PF02660 Glycerol-3-phosphate acyltransferase KM401_12005 PF00266 Aminotransferase class-V KM401_12010 PF00291 Pyridoxal-phosphate dependent enzyme KM401_12025 PF16123 Hydroxyacylglutathione hydrolase C-terminus KM401_12025 PF00753 Metallo-beta-lactamase superfamily KM401_12040 PF00270 DEAD/DEAH box helicase KM401_12040 PF00271 Helicase conserved C-terminal domain KM401_12055 PF00440 Bacterial regulatory proteins, tetR family KM401_12055 PF17932 Tetracyclin repressor-like, C-terminal domain KM401_12070 PF12704 MacB-like periplasmic core domain KM401_12070 PF02687 FtsX-like permease family KM401_12070 PF00005 ABC transporter KM401_12075 PF03848 Tellurite resistance protein TehB KM401_12075 PF09313 Domain of unknown function (DUF1971) KM401_12085 PF08241 Methyltransferase domain KM401_12090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM401_12090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM401_12090 PF00205 Thiamine pyrophosphate enzyme, central domain KM401_12095 PF12802 MarR family KM401_12100 PF00300 Histidine phosphatase superfamily (branch 1) KM401_12105 PF14171 Toxin SpoIISA, type II toxin-antitoxin system KM401_12135 PF01546 Peptidase family M20/M25/M40 KM401_12135 PF07687 Peptidase dimerisation domain KM401_12150 PF08281 Sigma-70, region 4 KM401_12150 PF04542 Sigma-70 region 2 KM401_12160 PF03717 Penicillin-binding Protein dimerisation domain KM401_12160 PF00905 Penicillin binding protein transpeptidase domain KM401_12175 PF01569 PAP2 superfamily KM401_12180 PF00356 Bacterial regulatory proteins, lacI family KM401_12185 PF07690 Major Facilitator Superfamily KM401_12190 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KM401_12190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM401_12195 PF00294 pfkB family carbohydrate kinase KM401_12200 PF00171 Aldehyde dehydrogenase family KM401_12205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM401_12205 PF00205 Thiamine pyrophosphate enzyme, central domain KM401_12205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM401_12210 PF01261 Xylose isomerase-like TIM barrel KM401_12215 PF01116 Fructose-bisphosphate aldolase class-II KM401_12220 PF04962 KduI/IolB family KM401_12245 PF18801 response regulator aspartate phosphatase H, N terminal KM401_12250 PF01381 Helix-turn-helix KM401_12265 PF02557 D-alanyl-D-alanine carboxypeptidase KM401_12275 PF00395 S-layer homology domain KM401_12275 PF01520 N-acetylmuramoyl-L-alanine amidase KM401_12285 PF00440 Bacterial regulatory proteins, tetR family KM401_12290 PF16326 ABC transporter C-terminal domain KM401_12290 PF00005 ABC transporter KM401_12300 PF00990 Diguanylate cyclase, GGDEF domain KM401_12300 PF03707 Bacterial signalling protein N terminal repeat KM401_12300 PF00563 EAL domain KM401_12305 PF13302 Acetyltransferase (GNAT) domain KM401_12320 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_12325 PF00581 Rhodanese-like domain KM401_12340 PF00005 ABC transporter KM401_12350 PF08359 YsiA-like protein, C-terminal region KM401_12350 PF00440 Bacterial regulatory proteins, tetR family KM401_12365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM401_12365 PF02770 Acyl-CoA dehydrogenase, middle domain KM401_12365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM401_12370 PF00289 Biotin carboxylase, N-terminal domain KM401_12370 PF02785 Biotin carboxylase C-terminal domain KM401_12370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM401_12375 PF00364 Biotin-requiring enzyme KM401_12380 PF00682 HMGL-like KM401_12385 PF00378 Enoyl-CoA hydratase/isomerase KM401_12390 PF01039 Carboxyl transferase domain KM401_12395 PF13193 AMP-binding enzyme C-terminal domain KM401_12395 PF00501 AMP-binding enzyme KM401_12395 PF16177 Acetyl-coenzyme A synthetase N-terminus KM401_12405 PF00583 Acetyltransferase (GNAT) family KM401_12410 PF00485 Phosphoribulokinase / Uridine kinase family KM401_12420 PF05163 DinB family KM401_12425 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_12425 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_12430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_12430 PF00512 His Kinase A (phospho-acceptor) domain KM401_12435 PF00486 Transcriptional regulatory protein, C terminal KM401_12435 PF00072 Response regulator receiver domain KM401_12440 PF01966 HD domain KM401_12445 PF13021 Domain of unknown function (DUF3885) KM401_12450 PF01048 Phosphorylase superfamily KM401_12490 PF17755 UvrA DNA-binding domain KM401_12490 PF17760 UvrA interaction domain KM401_12490 PF17755 UvrA DNA-binding domain KM401_12490 PF17760 UvrA interaction domain KM401_12505 PF00144 Beta-lactamase KM401_12510 PF00376 MerR family regulatory protein KM401_12510 PF09278 MerR, DNA binding KM401_12515 PF07690 Major Facilitator Superfamily KM401_12535 PF01636 Phosphotransferase enzyme family KM401_12540 PF12833 Helix-turn-helix domain KM401_12555 PF00392 Bacterial regulatory proteins, gntR family KM401_12555 PF00155 Aminotransferase class I and II KM401_12570 PF00107 Zinc-binding dehydrogenase KM401_12570 PF08240 Alcohol dehydrogenase GroES-like domain KM401_12600 PF07486 Cell Wall Hydrolase KM401_12610 PF00072 Response regulator receiver domain KM401_12610 PF00486 Transcriptional regulatory protein, C terminal KM401_12625 PF00005 ABC transporter KM401_12625 PF12848 ABC transporter KM401_12640 PF00005 ABC transporter KM401_12665 PF03447 Homoserine dehydrogenase, NAD binding domain KM401_12665 PF00742 Homoserine dehydrogenase KM401_12665 PF01842 ACT domain KM401_12670 PF00155 Aminotransferase class I and II KM401_12670 PF00392 Bacterial regulatory proteins, gntR family KM401_12675 PF01820 D-ala D-ala ligase N-terminus KM401_12675 PF07478 D-ala D-ala ligase C-terminus KM401_12680 PF03070 TENA/THI-4/PQQC family KM401_12745 PF00067 Cytochrome P450 KM401_12755 PF00132 Bacterial transferase hexapeptide (six repeats) KM401_12760 PF07561 Domain of Unknown Function (DUF1540) KM401_12770 PF00067 Cytochrome P450 KM401_12790 PF13188 PAS domain KM401_12790 PF13426 PAS domain KM401_12790 PF00989 PAS fold KM401_12790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_12790 PF00512 His Kinase A (phospho-acceptor) domain KM401_12795 PF00905 Penicillin binding protein transpeptidase domain KM401_12795 PF03717 Penicillin-binding Protein dimerisation domain KM401_12800 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KM401_12805 PF01177 Asp/Glu/Hydantoin racemase KM401_12810 PF07155 ECF-type riboflavin transporter, S component KM401_12815 PF00005 ABC transporter KM401_12815 PF12558 ATP-binding cassette cobalt transporter KM401_12830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_12830 PF00512 His Kinase A (phospho-acceptor) domain KM401_12840 PF04229 GrpB protein KM401_12845 PF00107 Zinc-binding dehydrogenase KM401_12845 PF08240 Alcohol dehydrogenase GroES-like domain KM401_12850 PF03793 PASTA domain KM401_12850 PF00905 Penicillin binding protein transpeptidase domain KM401_12850 PF03717 Penicillin-binding Protein dimerisation domain KM401_12860 PF00144 Beta-lactamase KM401_12860 PF11954 Domain of unknown function (DUF3471) KM401_12895 PF01965 DJ-1/PfpI family KM401_12910 PF00144 Beta-lactamase KM401_12925 PF07690 Major Facilitator Superfamily KM401_12940 PF03009 Glycerophosphoryl diester phosphodiesterase family KM401_12960 PF00892 EamA-like transporter family KM401_12965 PF01270 Glycosyl hydrolases family 8 KM401_12975 PF00293 NUDIX domain KM401_12985 PF00144 Beta-lactamase KM401_12995 PF07690 Major Facilitator Superfamily KM401_13010 PF00293 NUDIX domain KM401_13010 PF09297 NADH pyrophosphatase zinc ribbon domain KM401_13015 PF02768 DNA polymerase III beta subunit, C-terminal domain KM401_13015 PF00712 DNA polymerase III beta subunit, N-terminal domain KM401_13015 PF02767 DNA polymerase III beta subunit, central domain KM401_13020 PF00293 NUDIX domain KM401_13035 PF12706 Beta-lactamase superfamily domain KM401_13055 PF09234 Domain of unknown function (DUF1963) KM401_13080 PF08000 Bacterial PH domain KM401_13090 PF12867 DinB superfamily KM401_13105 PF02673 Bacitracin resistance protein BacA KM401_13115 PF01541 GIY-YIG catalytic domain KM401_13155 PF01266 FAD dependent oxidoreductase KM401_13180 PF13419 Haloacid dehalogenase-like hydrolase KM401_13200 PF00282 Pyridoxal-dependent decarboxylase conserved domain KM401_13205 PF00668 Condensation domain KM401_13205 PF00501 AMP-binding enzyme KM401_13205 PF13193 AMP-binding enzyme C-terminal domain KM401_13205 PF00550 Phosphopantetheine attachment site KM401_13215 PF03714 Bacterial pullanase-associated domain KM401_13215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KM401_13215 PF00128 Alpha amylase, catalytic domain KM401_13220 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM401_13220 PF07504 Fungalysin/Thermolysin Propeptide Motif KM401_13220 PF03413 Peptidase propeptide and YPEB domain KM401_13220 PF01447 Thermolysin metallopeptidase, catalytic domain KM401_13240 PF00344 SecY translocase KM401_13245 PF11638 DnaA N-terminal domain KM401_13245 PF08299 Bacterial dnaA protein helix-turn-helix KM401_13245 PF00308 Bacterial dnaA protein KM401_13250 PF00892 EamA-like transporter family KM401_13255 PF00392 Bacterial regulatory proteins, gntR family KM401_13255 PF00155 Aminotransferase class I and II KM401_13260 PF00561 alpha/beta hydrolase fold KM401_13285 PF06081 Aromatic acid exporter family member 1 KM401_13300 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KM401_13305 PF03413 Peptidase propeptide and YPEB domain KM401_13305 PF14620 YpeB sporulation KM401_13310 PF01471 Putative peptidoglycan binding domain KM401_13310 PF07486 Cell Wall Hydrolase KM401_13325 PF03301 Tryptophan 2,3-dioxygenase KM401_13330 PF04199 Putative cyclase KM401_13335 PF00266 Aminotransferase class-V KM401_13340 PF00440 Bacterial regulatory proteins, tetR family KM401_13340 PF08359 YsiA-like protein, C-terminal region KM401_13345 PF13344 Haloacid dehalogenase-like hydrolase KM401_13345 PF00293 NUDIX domain KM401_13370 PF00158 Sigma-54 interaction domain KM401_13370 PF02954 Bacterial regulatory protein, Fis family KM401_13370 PF01590 GAF domain KM401_13385 PF13302 Acetyltransferase (GNAT) domain KM401_13390 PF00455 DeoR C terminal sensor domain KM401_13390 PF08220 DeoR-like helix-turn-helix domain KM401_13405 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_13405 PF00403 Heavy-metal-associated domain KM401_13405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM401_13410 PF02082 Transcriptional regulator KM401_13425 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_13425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM401_13430 PF00364 Biotin-requiring enzyme KM401_13430 PF02817 e3 binding domain KM401_13430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM401_13435 PF02779 Transketolase, pyrimidine binding domain KM401_13435 PF02780 Transketolase, C-terminal domain KM401_13440 PF00676 Dehydrogenase E1 component KM401_13450 PF00106 short chain dehydrogenase KM401_13455 PF04229 GrpB protein KM401_13455 PF13673 Acetyltransferase (GNAT) domain KM401_13485 PF00528 Binding-protein-dependent transport system inner membrane component KM401_13490 PF00005 ABC transporter KM401_13490 PF00571 CBS domain KM401_13495 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KM401_13500 PF00574 Clp protease KM401_13515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KM401_13520 PF13673 Acetyltransferase (GNAT) domain KM401_13525 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KM401_13525 PF18416 N-acetylglucosamine binding protein domain 2 KM401_13540 PF10990 Protein of unknown function (DUF2809) KM401_13565 PF03772 Competence protein KM401_13565 PF13567 Domain of unknown function (DUF4131) KM401_13565 PF00753 Metallo-beta-lactamase superfamily KM401_13615 PF13538 UvrD-like helicase C-terminal domain KM401_13630 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KM401_13635 PF00270 DEAD/DEAH box helicase KM401_13635 PF00271 Helicase conserved C-terminal domain KM401_13635 PF00570 HRDC domain KM401_13635 PF16124 RecQ zinc-binding KM401_13635 PF09382 RQC domain KM401_13675 PF02833 DHHA2 domain KM401_13675 PF01368 DHH family KM401_13680 PF18416 N-acetylglucosamine binding protein domain 2 KM401_13680 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KM401_13695 PF02627 Carboxymuconolactone decarboxylase family KM401_13700 PF01235 Sodium:alanine symporter family KM401_13705 PF00171 Aldehyde dehydrogenase family KM401_13710 PF00701 Dihydrodipicolinate synthetase family KM401_13715 PF05544 Proline racemase KM401_13720 PF05544 Proline racemase KM401_13725 PF01266 FAD dependent oxidoreductase KM401_13730 PF02954 Bacterial regulatory protein, Fis family KM401_13730 PF13188 PAS domain KM401_13730 PF00158 Sigma-54 interaction domain KM401_13745 PF04324 BFD-like [2Fe-2S] binding domain KM401_13745 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_13760 PF08876 Domain of unknown function (DUF1836) KM401_13765 PF09335 SNARE associated Golgi protein KM401_13780 PF04914 DltD protein KM401_13785 PF13673 Acetyltransferase (GNAT) domain KM401_13785 PF13302 Acetyltransferase (GNAT) domain KM401_13785 PF00117 Glutamine amidotransferase class-I KM401_13785 PF00958 GMP synthase C terminal domain KM401_13785 PF03352 Methyladenine glycosylase KM401_13790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_13795 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain KM401_13795 PF00877 NlpC/P60 family KM401_13800 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KM401_13800 PF13378 Enolase C-terminal domain-like KM401_13820 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM401_13845 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain KM401_13845 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KM401_13850 PF16736 Single Cache-like KM401_13850 PF00989 PAS fold KM401_13850 PF00512 His Kinase A (phospho-acceptor) domain KM401_13850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_13875 PF01048 Phosphorylase superfamily KM401_13885 PF03808 Glycosyl transferase WecB/TagA/CpsF family KM401_13890 PF08439 Oligopeptidase F KM401_13890 PF01432 Peptidase family M3 KM401_13905 PF02645 Uncharacterised protein, DegV family COG1307 KM401_13925 PF07690 Major Facilitator Superfamily KM401_13935 PF04519 Polymer-forming cytoskeletal KM401_13940 PF13171 Protein of unknown function (DUF4004) KM401_13945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_13945 PF12793 Sugar transport-related sRNA regulator N-term KM401_13950 PF07690 Major Facilitator Superfamily KM401_13970 PF04226 Transglycosylase associated protein KM401_13975 PF01156 Inosine-uridine preferring nucleoside hydrolase KM401_13985 PF08241 Methyltransferase domain KM401_14020 PF00155 Aminotransferase class I and II KM401_14025 PF07977 FabA-like domain KM401_14030 PF03630 Fumble KM401_14050 PF00005 ABC transporter KM401_14095 PF01594 AI-2E family transporter KM401_14105 PF00296 Luciferase-like monooxygenase KM401_14110 PF00528 Binding-protein-dependent transport system inner membrane component KM401_14115 PF09084 NMT1/THI5 like KM401_14120 PF00005 ABC transporter KM401_14140 PF00293 NUDIX domain KM401_14140 PF09297 NADH pyrophosphatase zinc ribbon domain KM401_14160 PF02522 Aminoglycoside 3-N-acetyltransferase KM401_14185 PF13536 Putative multidrug resistance efflux transporter KM401_14190 PF12867 DinB superfamily KM401_14210 PF08713 DNA alkylation repair enzyme KM401_14220 PF01522 Polysaccharide deacetylase KM401_14230 PF03741 Integral membrane protein TerC family KM401_14235 PF00884 Sulfatase KM401_14240 PF00005 ABC transporter KM401_14240 PF12848 ABC transporter KM401_14250 PF03176 MMPL family KM401_14255 PF03176 MMPL family KM401_14260 PF03176 MMPL family KM401_14265 PF00440 Bacterial regulatory proteins, tetR family KM401_14265 PF16295 Tetracyclin repressor-like, C-terminal domain KM401_14275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KM401_14280 PF02153 Prephenate dehydrogenase KM401_14280 PF01842 ACT domain KM401_14285 PF00155 Aminotransferase class I and II KM401_14290 PF01264 Chorismate synthase KM401_14295 PF00793 DAHP synthetase I family KM401_14295 PF01817 Chorismate mutase type II KM401_14315 PF01636 Phosphotransferase enzyme family KM401_14330 PF06725 3D domain KM401_14330 PF01476 LysM domain KM401_14340 PF04542 Sigma-70 region 2 KM401_14340 PF08281 Sigma-70, region 4 KM401_14360 PF06039 Malate:quinone oxidoreductase (Mqo) KM401_14365 PF13407 Periplasmic binding protein domain KM401_14370 PF02653 Branched-chain amino acid transport system / permease component KM401_14375 PF02653 Branched-chain amino acid transport system / permease component KM401_14380 PF00005 ABC transporter KM401_14385 PF00325 Bacterial regulatory proteins, crp family KM401_14385 PF04198 Putative sugar-binding domain KM401_14400 PF01791 DeoC/LacD family aldolase KM401_14420 PF03992 Antibiotic biosynthesis monooxygenase KM401_14440 PF07662 Na+ dependent nucleoside transporter C-terminus KM401_14440 PF01773 Na+ dependent nucleoside transporter N-terminus KM401_14445 PF00171 Aldehyde dehydrogenase family KM401_14450 PF01472 PUA domain KM401_14450 PF00696 Amino acid kinase family KM401_14455 PF03807 NADP oxidoreductase coenzyme F420-dependent KM401_14455 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM401_14460 PF01546 Peptidase family M20/M25/M40 KM401_14465 PF01614 Bacterial transcriptional regulator KM401_14465 PF09339 IclR helix-turn-helix domain KM401_14470 PF00324 Amino acid permease KM401_14475 PF01139 tRNA-splicing ligase RtcB KM401_14480 PF00487 Fatty acid desaturase KM401_14485 PF00245 Alkaline phosphatase KM401_14490 PF11188 Protein of unknown function (DUF2975) KM401_14495 PF13443 Cro/C1-type HTH DNA-binding domain KM401_14510 PF10086 YhfC intramembrane metalloprotease KM401_14520 PF00072 Response regulator receiver domain KM401_14520 PF04397 LytTr DNA-binding domain KM401_14530 PF13302 Acetyltransferase (GNAT) domain KM401_14535 PF12681 Glyoxalase-like domain KM401_14555 PF17863 AAA lid domain KM401_14555 PF07726 ATPase family associated with various cellular activities (AAA) KM401_14570 PF07690 Major Facilitator Superfamily KM401_14580 PF00535 Glycosyl transferase family 2 KM401_14595 PF00535 Glycosyl transferase family 2 KM401_14605 PF00535 Glycosyl transferase family 2 KM401_14615 PF00202 Aminotransferase class-III KM401_14620 PF00199 Catalase KM401_14620 PF06628 Catalase-related immune-responsive KM401_14630 PF13382 Adenine deaminase C-terminal domain KM401_14630 PF01979 Amidohydrolase family KM401_14635 PF00144 Beta-lactamase KM401_14655 PF17863 AAA lid domain KM401_14655 PF07726 ATPase family associated with various cellular activities (AAA) KM401_14665 PF00881 Nitroreductase family KM401_14670 PF01047 MarR family KM401_14675 PF14492 Elongation Factor G, domain II KM401_14675 PF03764 Elongation factor G, domain IV KM401_14675 PF00009 Elongation factor Tu GTP binding domain KM401_14675 PF00679 Elongation factor G C-terminus KM401_14685 PF00293 NUDIX domain KM401_14700 PF00005 ABC transporter KM401_14705 PF00392 Bacterial regulatory proteins, gntR family KM401_14715 PF00005 ABC transporter KM401_14715 PF02687 FtsX-like permease family KM401_14715 PF12704 MacB-like periplasmic core domain KM401_14740 PF12833 Helix-turn-helix domain KM401_14745 PF00583 Acetyltransferase (GNAT) family KM401_14760 PF00892 EamA-like transporter family KM401_14765 PF00392 Bacterial regulatory proteins, gntR family KM401_14765 PF00155 Aminotransferase class I and II KM401_14770 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KM401_14775 PF13031 Protein of unknown function (DUF3892) KM401_14785 PF00672 HAMP domain KM401_14785 PF00512 His Kinase A (phospho-acceptor) domain KM401_14790 PF00072 Response regulator receiver domain KM401_14790 PF00486 Transcriptional regulatory protein, C terminal KM401_14795 PF00561 alpha/beta hydrolase fold KM401_14825 PF01925 Sulfite exporter TauE/SafE KM401_14830 PF13302 Acetyltransferase (GNAT) domain KM401_14835 PF00324 Amino acid permease KM401_14845 PF08713 DNA alkylation repair enzyme KM401_14850 PF10898 Protein of unknown function (DUF2716) KM401_14870 PF00293 NUDIX domain KM401_14880 PF10502 Signal peptidase, peptidase S26 KM401_14885 PF00905 Penicillin binding protein transpeptidase domain KM401_14885 PF03717 Penicillin-binding Protein dimerisation domain KM401_14895 PF02146 Sir2 family KM401_14900 PF01470 Pyroglutamyl peptidase KM401_14920 PF03746 LamB/YcsF family KM401_14925 PF02626 Carboxyltransferase domain, subdomain A and B KM401_14930 PF02682 Carboxyltransferase domain, subdomain C and D KM401_14935 PF01614 Bacterial transcriptional regulator KM401_14935 PF09339 IclR helix-turn-helix domain KM401_14940 PF10502 Signal peptidase, peptidase S26 KM401_14945 PF03932 CutC family KM401_14950 PF07454 Stage II sporulation protein P (SpoIIP) KM401_14965 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KM401_14965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM401_14965 PF02770 Acyl-CoA dehydrogenase, middle domain KM401_14980 PF07670 Nucleoside recognition KM401_14995 PF02915 Rubrerythrin KM401_15005 PF00440 Bacterial regulatory proteins, tetR family KM401_15010 PF00391 PEP-utilising enzyme, mobile domain KM401_15010 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KM401_15015 PF00753 Metallo-beta-lactamase superfamily KM401_15030 PF07875 Coat F domain KM401_15035 PF08892 YqcI/YcgG family KM401_15040 PF01810 LysE type translocator KM401_15055 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM401_15060 PF10710 Protein of unknown function (DUF2512) KM401_15065 PF11553 Protein of unknown function (DUF3231) KM401_15070 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM401_15075 PF00107 Zinc-binding dehydrogenase KM401_15075 PF08240 Alcohol dehydrogenase GroES-like domain KM401_15075 PF13823 Alcohol dehydrogenase GroES-associated KM401_15090 PF00206 Lyase KM401_15090 PF10415 Fumarase C C-terminus KM401_15095 PF00710 Asparaginase, N-terminal KM401_15095 PF17763 Glutaminase/Asparaginase C-terminal domain KM401_15100 PF01381 Helix-turn-helix KM401_15110 PF01541 GIY-YIG catalytic domain KM401_15110 PF12826 Helix-hairpin-helix motif KM401_15110 PF02151 UvrB/uvrC motif KM401_15110 PF08459 UvrC Helix-hairpin-helix N-terminal KM401_15115 PF13520 Amino acid permease KM401_15120 PF05525 Branched-chain amino acid transport protein KM401_15125 PF03807 NADP oxidoreductase coenzyme F420-dependent KM401_15125 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM401_15130 PF13564 DoxX-like family KM401_15135 PF03949 Malic enzyme, NAD binding domain KM401_15135 PF00390 Malic enzyme, N-terminal domain KM401_15150 PF03845 Spore germination protein KM401_15160 PF00072 Response regulator receiver domain KM401_15160 PF08664 YcbB domain KM401_15170 PF04960 Glutaminase KM401_15175 PF01235 Sodium:alanine symporter family KM401_15205 PF02872 5'-nucleotidase, C-terminal domain KM401_15205 PF17936 Bacterial Ig domain KM401_15205 PF00149 Calcineurin-like phosphoesterase KM401_15210 PF00199 Catalase KM401_15210 PF06628 Catalase-related immune-responsive KM401_15215 PF00561 alpha/beta hydrolase fold KM401_15220 PF00857 Isochorismatase family KM401_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_15240 PF03466 LysR substrate binding domain KM401_15245 PF01047 MarR family KM401_15265 PF11181 Heat induced stress protein YflT KM401_15280 PF03073 TspO/MBR family KM401_15285 PF03441 FAD binding domain of DNA photolyase KM401_15285 PF00875 DNA photolyase KM401_15295 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) KM401_15300 PF00361 Proton-conducting membrane transporter KM401_15300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KM401_15305 PF10057 Uncharacterized conserved protein (DUF2294) KM401_15320 PF01040 UbiA prenyltransferase family KM401_15325 PF00561 alpha/beta hydrolase fold KM401_15330 PF01297 Zinc-uptake complex component A periplasmic KM401_15335 PF00950 ABC 3 transport family KM401_15340 PF00005 ABC transporter KM401_15365 PF01451 Low molecular weight phosphotyrosine protein phosphatase KM401_15370 PF01758 Sodium Bile acid symporter family KM401_15375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_15380 PF01022 Bacterial regulatory protein, arsR family KM401_15395 PF00012 Hsp70 protein KM401_15410 PF01037 Lrp/AsnC ligand binding domain KM401_15425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_15450 PF02805 Metal binding domain of Ada KM401_15450 PF12833 Helix-turn-helix domain KM401_15460 PF00144 Beta-lactamase KM401_15485 PF12802 MarR family KM401_15490 PF00258 Flavodoxin KM401_15490 PF00175 Oxidoreductase NAD-binding domain KM401_15490 PF00067 Cytochrome P450 KM401_15490 PF00667 FAD binding domain KM401_15495 PF07690 Major Facilitator Superfamily KM401_15520 PF00072 Response regulator receiver domain KM401_15520 PF00486 Transcriptional regulatory protein, C terminal KM401_15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_15525 PF00672 HAMP domain KM401_15525 PF00512 His Kinase A (phospho-acceptor) domain KM401_15550 PF00291 Pyridoxal-phosphate dependent enzyme KM401_15570 PF01381 Helix-turn-helix KM401_15585 PF00753 Metallo-beta-lactamase superfamily KM401_15590 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family KM401_15600 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM401_15600 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM401_15605 PF04072 Leucine carboxyl methyltransferase KM401_15620 PF00005 ABC transporter KM401_15625 PF02687 FtsX-like permease family KM401_15640 PF00512 His Kinase A (phospho-acceptor) domain KM401_15640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_15640 PF00672 HAMP domain KM401_15645 PF00072 Response regulator receiver domain KM401_15645 PF00486 Transcriptional regulatory protein, C terminal KM401_15655 PF01047 MarR family KM401_15665 PF04299 Putative FMN-binding domain KM401_15670 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_15670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_15675 PF07690 Major Facilitator Superfamily KM401_15680 PF02589 LUD domain KM401_15685 PF02589 LUD domain KM401_15685 PF11870 Domain of unknown function (DUF3390) KM401_15685 PF13183 4Fe-4S dicluster domain KM401_15690 PF02754 Cysteine-rich domain KM401_15695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_15695 PF03466 LysR substrate binding domain KM401_15705 PF17676 LD-carboxypeptidase C-terminal domain KM401_15705 PF02016 LD-carboxypeptidase N-terminal domain KM401_15730 PF07690 Major Facilitator Superfamily KM401_15735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM401_15735 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KM401_15740 PF05116 Sucrose-6F-phosphate phosphohydrolase KM401_15750 PF00356 Bacterial regulatory proteins, lacI family KM401_15755 PF18801 response regulator aspartate phosphatase H, N terminal KM401_15775 PF11798 IMS family HHH motif KM401_15775 PF00817 impB/mucB/samB family KM401_15775 PF11799 impB/mucB/samB family C-terminal domain KM401_15790 PF00672 HAMP domain KM401_15790 PF02743 Cache domain KM401_15790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_15805 PF01554 MatE KM401_15815 PF18496 Collagenase G catalytic helper subdomain KM401_15815 PF08453 Peptidase family M9 N-terminal KM401_15815 PF01752 Collagenase KM401_15825 PF07690 Major Facilitator Superfamily KM401_15830 PF00440 Bacterial regulatory proteins, tetR family KM401_15830 PF16859 Tetracyclin repressor-like, C-terminal domain KM401_15840 PF01022 Bacterial regulatory protein, arsR family KM401_15850 PF03313 Serine dehydratase alpha chain KM401_15855 PF03315 Serine dehydratase beta chain KM401_15855 PF01842 ACT domain KM401_15865 PF00202 Aminotransferase class-III KM401_15870 PF17788 HypF Kae1-like domain KM401_15870 PF01300 Telomere recombination KM401_15870 PF00708 Acylphosphatase KM401_15870 PF07503 HypF finger KM401_15875 PF02769 AIR synthase related protein, C-terminal domain KM401_15875 PF00586 AIR synthase related protein, N-terminal domain KM401_15880 PF00857 Isochorismatase family KM401_15885 PF01037 Lrp/AsnC ligand binding domain KM401_15890 PF13520 Amino acid permease KM401_15905 PF01842 ACT domain KM401_15905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KM401_15905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KM401_15910 PF00266 Aminotransferase class-V KM401_15925 PF04542 Sigma-70 region 2 KM401_15925 PF08281 Sigma-70, region 4 KM401_15940 PF07883 Cupin domain KM401_15945 PF12833 Helix-turn-helix domain KM401_15945 PF01497 Periplasmic binding protein KM401_15950 PF01804 Penicillin amidase KM401_15990 PF14044 NETI protein KM401_15995 PF07690 Major Facilitator Superfamily KM401_16000 PF12697 Alpha/beta hydrolase family KM401_16005 PF01047 MarR family KM401_16010 PF07690 Major Facilitator Superfamily KM401_16020 PF12679 ABC-2 family transporter protein KM401_16025 PF13732 Domain of unknown function (DUF4162) KM401_16025 PF00005 ABC transporter KM401_16030 PF13396 Phospholipase_D-nuclease N-terminal KM401_16040 PF17314 Family of unknown function (DUF5360) KM401_16045 PF00893 Small Multidrug Resistance protein KM401_16050 PF00440 Bacterial regulatory proteins, tetR family KM401_16055 PF01289 Thiol-activated cytolysin KM401_16055 PF17440 Thiol-activated cytolysin beta sandwich domain KM401_16060 PF02667 Short chain fatty acid transporter KM401_16070 PF02525 Flavodoxin-like fold KM401_16090 PF14256 YwiC-like protein KM401_16100 PF00005 ABC transporter KM401_16105 PF02361 Cobalt transport protein KM401_16120 PF03737 Aldolase/RraA KM401_16125 PF03606 C4-dicarboxylate anaerobic carrier KM401_16130 PF04231 Endonuclease I KM401_16145 PF01381 Helix-turn-helix KM401_16150 PF02660 Glycerol-3-phosphate acyltransferase KM401_16155 PF04073 Aminoacyl-tRNA editing domain KM401_16160 PF03129 Anticodon binding domain KM401_16160 PF13393 Histidyl-tRNA synthetase KM401_16175 PF01638 HxlR-like helix-turn-helix KM401_16180 PF00881 Nitroreductase family KM401_16190 PF02887 Pyruvate kinase, alpha/beta domain KM401_16190 PF00224 Pyruvate kinase, barrel domain KM401_16190 PF00391 PEP-utilising enzyme, mobile domain KM401_16210 PF00005 ABC transporter KM401_16235 PF13419 Haloacid dehalogenase-like hydrolase KM401_16245 PF13350 Tyrosine phosphatase family KM401_16270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_16275 PF00480 ROK family KM401_16280 PF07690 Major Facilitator Superfamily KM401_16285 PF12464 Maltose acetyltransferase KM401_16285 PF14602 Hexapeptide repeat of succinyl-transferase KM401_16295 PF12704 MacB-like periplasmic core domain KM401_16295 PF02687 FtsX-like permease family KM401_16295 PF00005 ABC transporter KM401_16305 PF00579 tRNA synthetases class I (W and Y) KM401_16310 PF13288 DXP reductoisomerase C-terminal domain KM401_16310 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KM401_16310 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KM401_16315 PF01594 AI-2E family transporter KM401_16335 PF08241 Methyltransferase domain KM401_16345 PF07690 Major Facilitator Superfamily KM401_16365 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_16375 PF03471 Transporter associated domain KM401_16375 PF00571 CBS domain KM401_16375 PF01595 Cyclin M transmembrane N-terminal domain KM401_16380 PF13411 MerR HTH family regulatory protein KM401_16385 PF00892 EamA-like transporter family KM401_16390 PF00805 Pentapeptide repeats (8 copies) KM401_16395 PF06906 Protein of unknown function (DUF1272) KM401_16400 PF10282 Lactonase, 7-bladed beta-propeller KM401_16405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM401_16405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM401_16410 PF02447 GntP family permease KM401_16415 PF00923 Transaldolase/Fructose-6-phosphate aldolase KM401_16420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM401_16420 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KM401_16425 PF00456 Transketolase, thiamine diphosphate binding domain KM401_16425 PF02780 Transketolase, C-terminal domain KM401_16425 PF02779 Transketolase, pyrimidine binding domain KM401_16430 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KM401_16430 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KM401_16435 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KM401_16435 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KM401_16440 PF08240 Alcohol dehydrogenase GroES-like domain KM401_16440 PF00107 Zinc-binding dehydrogenase KM401_16445 PF00296 Luciferase-like monooxygenase KM401_16455 PF08240 Alcohol dehydrogenase GroES-like domain KM401_16455 PF00698 Acyl transferase domain KM401_16455 PF00109 Beta-ketoacyl synthase, N-terminal domain KM401_16455 PF16197 Ketoacyl-synthetase C-terminal extension KM401_16455 PF00550 Phosphopantetheine attachment site KM401_16455 PF14765 Polyketide synthase dehydratase KM401_16455 PF08659 KR domain KM401_16455 PF02801 Beta-ketoacyl synthase, C-terminal domain KM401_16460 PF00106 short chain dehydrogenase KM401_16465 PF03413 Peptidase propeptide and YPEB domain KM401_16465 PF01447 Thermolysin metallopeptidase, catalytic domain KM401_16465 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM401_16465 PF07504 Fungalysin/Thermolysin Propeptide Motif KM401_16485 PF00248 Aldo/keto reductase family KM401_16490 PF07690 Major Facilitator Superfamily KM401_16500 PF03928 Haem-degrading KM401_16505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_16535 PF03960 ArsC family KM401_16540 PF01638 HxlR-like helix-turn-helix KM401_16545 PF00392 Bacterial regulatory proteins, gntR family KM401_16545 PF07702 UTRA domain KM401_16560 PF01638 HxlR-like helix-turn-helix KM401_16565 PF01638 HxlR-like helix-turn-helix KM401_16570 PF00248 Aldo/keto reductase family KM401_16600 PF02567 Phenazine biosynthesis-like protein KM401_16620 PF13193 AMP-binding enzyme C-terminal domain KM401_16620 PF00501 AMP-binding enzyme KM401_16630 PF01638 HxlR-like helix-turn-helix KM401_16650 PF01022 Bacterial regulatory protein, arsR family KM401_16660 PF12791 Anti-sigma factor N-terminus KM401_16665 PF04542 Sigma-70 region 2 KM401_16680 PF00440 Bacterial regulatory proteins, tetR family KM401_16700 PF05656 Protein of unknown function (DUF805) KM401_16705 PF01061 ABC-2 type transporter KM401_16710 PF00005 ABC transporter KM401_16710 PF13732 Domain of unknown function (DUF4162) KM401_16725 PF03063 Prismane/CO dehydrogenase family KM401_16735 PF00753 Metallo-beta-lactamase superfamily KM401_16740 PF01183 Glycosyl hydrolases family 25 KM401_16740 PF01471 Putative peptidoglycan binding domain KM401_16765 PF00144 Beta-lactamase KM401_16805 PF00753 Metallo-beta-lactamase superfamily KM401_16810 PF08240 Alcohol dehydrogenase GroES-like domain KM401_16810 PF00107 Zinc-binding dehydrogenase KM401_16815 PF00324 Amino acid permease KM401_16820 PF07690 Major Facilitator Superfamily KM401_16845 PF02585 GlcNAc-PI de-N-acetylase KM401_16850 PF08830 Protein of unknown function (DUF1806) KM401_16855 PF03600 Citrate transporter KM401_16875 PF01497 Periplasmic binding protein KM401_16880 PF01032 FecCD transport family KM401_16885 PF01032 FecCD transport family KM401_16890 PF05675 Protein of unknown function (DUF817) KM401_16895 PF02567 Phenazine biosynthesis-like protein KM401_16900 PF13170 Protein of unknown function (DUF4003) KM401_16915 PF10901 Protein of unknown function (DUF2690) KM401_16925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_16925 PF03466 LysR substrate binding domain KM401_16945 PF00488 MutS domain V KM401_16945 PF01713 Smr domain KM401_16955 PF09154 Domain of unknown function (DUF1939) KM401_16955 PF00128 Alpha amylase, catalytic domain KM401_16970 PF00144 Beta-lactamase KM401_16980 PF07690 Major Facilitator Superfamily KM401_16985 PF03466 LysR substrate binding domain KM401_16985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_17000 PF03009 Glycerophosphoryl diester phosphodiesterase family KM401_17020 PF01494 FAD binding domain KM401_17025 PF01022 Bacterial regulatory protein, arsR family KM401_17030 PF08240 Alcohol dehydrogenase GroES-like domain KM401_17030 PF00107 Zinc-binding dehydrogenase KM401_17035 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KM401_17050 PF04299 Putative FMN-binding domain KM401_17055 PF04229 GrpB protein KM401_17065 PF01758 Sodium Bile acid symporter family KM401_17070 PF01565 FAD binding domain KM401_17070 PF02913 FAD linked oxidases, C-terminal domain KM401_17090 PF00132 Bacterial transferase hexapeptide (six repeats) KM401_17095 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KM401_17100 PF00535 Glycosyl transferase family 2 KM401_17105 PF00378 Enoyl-CoA hydratase/isomerase KM401_17110 PF18496 Collagenase G catalytic helper subdomain KM401_17110 PF01752 Collagenase KM401_17110 PF08453 Peptidase family M9 N-terminal KM401_17115 PF02308 MgtC family KM401_17130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_17135 PF04294 VanW like protein KM401_17145 PF13037 Domain of unknown function (DUF3898) KM401_17145 PF13039 Protein of unknown function (DUF3900) KM401_17165 PF00313 'Cold-shock' DNA-binding domain KM401_17175 PF00258 Flavodoxin KM401_17185 PF00293 NUDIX domain KM401_17195 PF00132 Bacterial transferase hexapeptide (six repeats) KM401_17205 PF00106 short chain dehydrogenase KM401_17215 PF00206 Lyase KM401_17215 PF14698 Argininosuccinate lyase C-terminal KM401_17225 PF01156 Inosine-uridine preferring nucleoside hydrolase KM401_17230 PF00474 Sodium:solute symporter family KM401_17240 PF00171 Aldehyde dehydrogenase family KM401_17250 PF14151 YfhD-like protein KM401_17255 PF13243 Squalene-hopene cyclase C-terminal domain KM401_17255 PF13249 Squalene-hopene cyclase N-terminal domain KM401_17260 PF02681 Divergent PAP2 family KM401_17265 PF00892 EamA-like transporter family KM401_17270 PF06961 Protein of unknown function (DUF1294) KM401_17285 PF10609 NUBPL iron-transfer P-loop NTPase KM401_17295 PF02391 MoaE protein KM401_17300 PF03454 MoeA C-terminal region (domain IV) KM401_17300 PF03453 MoeA N-terminal region (domain I and II) KM401_17300 PF00994 Probable molybdopterin binding domain KM401_17305 PF00899 ThiF family KM401_17310 PF01226 Formate/nitrite transporter KM401_17315 PF04055 Radical SAM superfamily KM401_17315 PF06463 Molybdenum Cofactor Synthesis C KM401_17320 PF02634 FdhD/NarQ family KM401_17325 PF10057 Uncharacterized conserved protein (DUF2294) KM401_17330 PF07849 Protein of unknown function (DUF1641) KM401_17335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KM401_17335 PF00037 4Fe-4S binding domain KM401_17335 PF00384 Molybdopterin oxidoreductase KM401_17335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KM401_17335 PF01568 Molydopterin dinucleotide binding domain KM401_17340 PF03323 Bacillus/Clostridium GerA spore germination protein KM401_17380 PF08241 Methyltransferase domain KM401_17385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_17390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_17395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_17400 PF00375 Sodium:dicarboxylate symporter family KM401_17405 PF03816 Cell envelope-related transcriptional attenuator domain KM401_17415 PF08281 Sigma-70, region 4 KM401_17415 PF04542 Sigma-70 region 2 KM401_17435 PF00005 ABC transporter KM401_17435 PF13732 Domain of unknown function (DUF4162) KM401_17445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KM401_17445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM401_17450 PF00521 DNA gyrase/topoisomerase IV, subunit A KM401_17450 PF03989 DNA gyrase C-terminal domain, beta-propeller KM401_17455 PF01751 Toprim domain KM401_17455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_17455 PF00986 DNA gyrase B subunit, carboxyl terminus KM401_17455 PF00204 DNA gyrase B KM401_17460 PF13380 CoA binding domain KM401_17465 PF13180 PDZ domain KM401_17470 PF00486 Transcriptional regulatory protein, C terminal KM401_17470 PF00072 Response regulator receiver domain KM401_17480 PF13597 Anaerobic ribonucleoside-triphosphate reductase KM401_17480 PF03477 ATP cone domain KM401_17485 PF02660 Glycerol-3-phosphate acyltransferase KM401_17490 PF01521 Iron-sulphur cluster biosynthesis KM401_17495 PF03061 Thioesterase superfamily KM401_17500 PF00704 Glycosyl hydrolases family 18 KM401_17500 PF01476 LysM domain KM401_17510 PF08177 Small acid-soluble spore protein N family KM401_17515 PF13040 Fur-regulated basic protein B KM401_17520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KM401_17520 PF11490 DNA polymerase III polC-type N-terminus II KM401_17520 PF01336 OB-fold nucleic acid binding domain KM401_17520 PF07733 Bacterial DNA polymerase III alpha NTPase domain KM401_17520 PF00929 Exonuclease KM401_17520 PF02811 PHP domain KM401_17520 PF14579 Helix-hairpin-helix motif KM401_17525 PF00578 AhpC/TSA family KM401_17535 PF00664 ABC transporter transmembrane region KM401_17535 PF00005 ABC transporter KM401_17535 PF03412 Peptidase C39 family KM401_17540 PF00330 Aconitase family (aconitate hydratase) KM401_17540 PF00694 Aconitase C-terminal domain KM401_17550 PF01522 Polysaccharide deacetylase KM401_17580 PF02272 DHHA1 domain KM401_17580 PF01411 tRNA synthetases class II (A) KM401_17580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM401_17585 PF13344 Haloacid dehalogenase-like hydrolase KM401_17585 PF00293 NUDIX domain KM401_17595 PF02803 Thiolase, C-terminal domain KM401_17595 PF00108 Thiolase, N-terminal domain KM401_17600 PF00501 AMP-binding enzyme KM401_17600 PF13193 AMP-binding enzyme C-terminal domain KM401_17605 PF02632 BioY family KM401_17610 PF00501 AMP-binding enzyme KM401_17610 PF13193 AMP-binding enzyme C-terminal domain KM401_17630 PF05532 CsbD-like KM401_17660 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_17660 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_17670 PF00512 His Kinase A (phospho-acceptor) domain KM401_17670 PF13188 PAS domain KM401_17670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_17670 PF13426 PAS domain KM401_17670 PF00989 PAS fold KM401_17675 PF01738 Dienelactone hydrolase family KM401_17680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_17685 PF00474 Sodium:solute symporter family KM401_17690 PF01645 Conserved region in glutamate synthase KM401_17695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KM401_17700 PF02559 CarD-like/TRCF domain KM401_17705 PF00491 Arginase family KM401_17710 PF01979 Amidohydrolase family KM401_17715 PF01175 Urocanase Rossmann-like domain KM401_17715 PF17392 Urocanase C-terminal domain KM401_17715 PF17391 Urocanase N-terminal domain KM401_17720 PF00221 Aromatic amino acid lyase KM401_17725 PF09021 HutP KM401_17730 PF01209 ubiE/COQ5 methyltransferase family KM401_17750 PF11084 Protein of unknown function (DUF2621) KM401_17785 PF07301 Protein of unknown function (DUF1453) KM401_17790 PF02683 Cytochrome C biogenesis protein transmembrane region KM401_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_17800 PF03466 LysR substrate binding domain KM401_17805 PF03788 LrgA family KM401_17810 PF04172 LrgB-like family KM401_17815 PF00293 NUDIX domain KM401_17815 PF13344 Haloacid dehalogenase-like hydrolase KM401_17835 PF01510 N-acetylmuramoyl-L-alanine amidase KM401_17835 PF01471 Putative peptidoglycan binding domain KM401_17850 PF00664 ABC transporter transmembrane region KM401_17850 PF00005 ABC transporter KM401_17855 PF00005 ABC transporter KM401_17855 PF00664 ABC transporter transmembrane region KM401_17860 PF03672 Uncharacterised protein family (UPF0154) KM401_17865 PF10747 Sporulation inhibitor of replication protein SirA KM401_17870 PF02779 Transketolase, pyrimidine binding domain KM401_17870 PF02780 Transketolase, C-terminal domain KM401_17870 PF00456 Transketolase, thiamine diphosphate binding domain KM401_17875 PF01385 Probable transposase KM401_17875 PF12323 Helix-turn-helix domain KM401_17875 PF07282 Putative transposase DNA-binding domain KM401_17880 PF00528 Binding-protein-dependent transport system inner membrane component KM401_17885 PF00528 Binding-protein-dependent transport system inner membrane component KM401_17890 PF00005 ABC transporter KM401_17905 PF05979 Bacterial protein of unknown function (DUF896) KM401_17910 PF00239 Resolvase, N terminal domain KM401_17915 PF01726 LexA DNA binding domain KM401_17915 PF00717 Peptidase S24-like KM401_17930 PF03551 Transcriptional regulator PadR-like family KM401_17965 PF01510 N-acetylmuramoyl-L-alanine amidase KM401_17965 PF01471 Putative peptidoglycan binding domain KM401_17965 PF01476 LysM domain KM401_17970 PF05105 Bacteriophage holin family KM401_18125 PF08281 Sigma-70, region 4 KM401_18170 PF02511 Thymidylate synthase complementing protein KM401_18175 PF00145 C-5 cytosine-specific DNA methylase KM401_18255 PF01381 Helix-turn-helix KM401_18275 PF02899 Phage integrase, N-terminal SAM-like domain KM401_18275 PF00589 Phage integrase family KM401_18280 PF00120 Glutamine synthetase, catalytic domain KM401_18280 PF03951 Glutamine synthetase, beta-Grasp domain KM401_18285 PF13411 MerR HTH family regulatory protein KM401_18290 PF06838 Methionine gamma-lyase KM401_18300 PF03458 UPF0126 domain KM401_18310 PF17866 AAA lid domain KM401_18310 PF00004 ATPase family associated with various cellular activities (AAA) KM401_18325 PF17209 Hfq protein KM401_18340 PF01476 LysM domain KM401_18340 PF06725 3D domain KM401_18345 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM401_18345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KM401_18350 PF00294 pfkB family carbohydrate kinase KM401_18355 PF08220 DeoR-like helix-turn-helix domain KM401_18355 PF00455 DeoR C terminal sensor domain KM401_18365 PF04238 Protein of unknown function (DUF420) KM401_18375 PF00324 Amino acid permease KM401_18380 PF00041 Fibronectin type III domain KM401_18380 PF00704 Glycosyl hydrolases family 18 KM401_18390 PF00149 Calcineurin-like phosphoesterase KM401_18390 PF10518 TAT (twin-arginine translocation) pathway signal sequence KM401_18395 PF01226 Formate/nitrite transporter KM401_18400 PF00216 Bacterial DNA-binding protein KM401_18405 PF00403 Heavy-metal-associated domain KM401_18410 PF00403 Heavy-metal-associated domain KM401_18415 PF02583 Metal-sensitive transcriptional repressor KM401_18425 PF00756 Putative esterase KM401_18430 PF00005 ABC transporter KM401_18435 PF01032 FecCD transport family KM401_18440 PF01032 FecCD transport family KM401_18450 PF03372 Endonuclease/Exonuclease/phosphatase family KM401_18455 PF12833 Helix-turn-helix domain KM401_18455 PF02805 Metal binding domain of Ada KM401_18460 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KM401_18460 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KM401_18465 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain KM401_18465 PF00730 HhH-GPD superfamily base excision DNA repair protein KM401_18470 PF01546 Peptidase family M20/M25/M40 KM401_18470 PF07687 Peptidase dimerisation domain KM401_18490 PF00561 alpha/beta hydrolase fold KM401_18495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_18500 PF00563 EAL domain KM401_18500 PF03707 Bacterial signalling protein N terminal repeat KM401_18500 PF00990 Diguanylate cyclase, GGDEF domain KM401_18510 PF10787 Uncharacterised protein from bacillus cereus group KM401_18515 PF04172 LrgB-like family KM401_18520 PF03788 LrgA family KM401_18525 PF00392 Bacterial regulatory proteins, gntR family KM401_18525 PF00155 Aminotransferase class I and II KM401_18530 PF00561 alpha/beta hydrolase fold KM401_18530 PF00364 Biotin-requiring enzyme KM401_18535 PF02585 GlcNAc-PI de-N-acetylase KM401_18550 PF00388 Phosphatidylinositol-specific phospholipase C, X domain KM401_18555 PF00082 Subtilase family KM401_18560 PF07486 Cell Wall Hydrolase KM401_18565 PF03275 UDP-galactopyranose mutase KM401_18570 PF00884 Sulfatase KM401_18575 PF00350 Dynamin family KM401_18585 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family KM401_18590 PF00512 His Kinase A (phospho-acceptor) domain KM401_18590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_18595 PF00486 Transcriptional regulatory protein, C terminal KM401_18595 PF00072 Response regulator receiver domain KM401_18610 PF00005 ABC transporter KM401_18615 PF08676 MutL C terminal dimerisation domain KM401_18615 PF01119 DNA mismatch repair protein, C-terminal domain KM401_18620 PF00488 MutS domain V KM401_18620 PF05190 MutS family domain IV KM401_18620 PF05192 MutS domain III KM401_18620 PF05188 MutS domain II KM401_18620 PF01624 MutS domain I KM401_18625 PF10628 Outer spore coat protein E (CotE) KM401_18630 PF06133 Control of competence regulator ComK, YlbF/YmcA KM401_18635 PF04055 Radical SAM superfamily KM401_18635 PF01938 TRAM domain KM401_18635 PF00919 Uncharacterized protein family UPF0004 KM401_18640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM401_18645 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KM401_18645 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KM401_18645 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KM401_18650 PF01244 Membrane dipeptidase (Peptidase family M19) KM401_18655 PF04232 Stage V sporulation protein S (SpoVS) KM401_18660 PF13277 YmdB-like protein KM401_18665 PF00013 KH domain KM401_18665 PF01966 HD domain KM401_18665 PF12072 Domain of unknown function (DUF3552) KM401_18670 PF00154 recA bacterial DNA recombination protein KM401_18680 PF02464 Competence-damaged protein KM401_18680 PF00994 Probable molybdopterin binding domain KM401_18680 PF18146 Damage-inducible protein CinA KH domain KM401_18685 PF01066 CDP-alcohol phosphatidyltransferase KM401_18690 PF13464 Domain of unknown function (DUF4115) KM401_18695 PF11868 Protein of unknown function (DUF3388) KM401_18700 PF11588 Protein of unknown function (DUF3243) KM401_18710 PF00675 Insulinase (Peptidase family M16) KM401_18710 PF05193 Peptidase M16 inactive domain KM401_18715 PF05193 Peptidase M16 inactive domain KM401_18720 PF02653 Branched-chain amino acid transport system / permease component KM401_18730 PF00005 ABC transporter KM401_18735 PF02608 ABC transporter substrate-binding protein PnrA-like KM401_18740 PF00392 Bacterial regulatory proteins, gntR family KM401_18740 PF07702 UTRA domain KM401_18745 PF01580 FtsK/SpoIIIE family KM401_18745 PF17854 FtsK alpha domain KM401_18745 PF09397 Ftsk gamma domain KM401_18750 PF14035 YlzJ-like protein KM401_18755 PF00574 Clp protease KM401_18760 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KM401_18760 PF17770 Ribonuclease J C-terminal domain KM401_18760 PF00753 Metallo-beta-lactamase superfamily KM401_18765 PF00701 Dihydrodipicolinate synthetase family KM401_18770 PF00696 Amino acid kinase family KM401_18770 PF13840 ACT domain KM401_18775 PF02774 Semialdehyde dehydrogenase, dimerisation domain KM401_18775 PF01118 Semialdehyde dehydrogenase, NAD binding domain KM401_18780 PF02441 Flavoprotein KM401_18785 PF16924 Dipicolinate synthase subunit A N-terminal domain KM401_18785 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KM401_18790 PF05239 PRC-barrel domain KM401_18795 PF00675 Insulinase (Peptidase family M16) KM401_18795 PF05193 Peptidase M16 inactive domain KM401_18800 PF01522 Polysaccharide deacetylase KM401_18805 PF00013 KH domain KM401_18805 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KM401_18805 PF01138 3' exoribonuclease family, domain 1 KM401_18805 PF03725 3' exoribonuclease family, domain 2 KM401_18805 PF00575 S1 RNA binding domain KM401_18810 PF00312 Ribosomal protein S15 KM401_18815 PF06574 FAD synthetase KM401_18815 PF01687 Riboflavin kinase KM401_18820 PF01509 TruB family pseudouridylate synthase (N terminal domain) KM401_18820 PF16198 tRNA pseudouridylate synthase B C-terminal domain KM401_18825 PF02033 Ribosome-binding factor A KM401_18830 PF04456 Protein of unknown function (DUF503) KM401_18835 PF11987 Translation-initiation factor 2 KM401_18835 PF00009 Elongation factor Tu GTP binding domain KM401_18835 PF04760 Translation initiation factor IF-2, N-terminal region KM401_18840 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KM401_18845 PF04296 Protein of unknown function (DUF448) KM401_18850 PF00575 S1 RNA binding domain KM401_18850 PF13184 NusA-like KH domain KM401_18850 PF08529 NusA N-terminal domain KM401_18855 PF17384 RimP C-terminal SH3 domain KM401_18855 PF02576 RimP N-terminal domain KM401_18860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KM401_18860 PF14579 Helix-hairpin-helix motif KM401_18860 PF02811 PHP domain KM401_18860 PF00929 Exonuclease KM401_18860 PF14480 DNA polymerase III polC-type N-terminus I KM401_18860 PF11490 DNA polymerase III polC-type N-terminus II KM401_18860 PF07733 Bacterial DNA polymerase III alpha NTPase domain KM401_18865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM401_18865 PF04073 Aminoacyl-tRNA editing domain KM401_18865 PF03129 Anticodon binding domain KM401_18870 PF17820 PDZ domain KM401_18870 PF02163 Peptidase family M50 KM401_18875 PF13288 DXP reductoisomerase C-terminal domain KM401_18875 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KM401_18875 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KM401_18885 PF01255 Putative undecaprenyl diphosphate synthase KM401_18890 PF01765 Ribosome recycling factor KM401_18895 PF00696 Amino acid kinase family KM401_18900 PF00889 Elongation factor TS KM401_18905 PF00318 Ribosomal protein S2 KM401_18910 PF08222 CodY helix-turn-helix domain KM401_18910 PF06018 CodY GAF-like domain KM401_18915 PF00004 ATPase family associated with various cellular activities (AAA) KM401_18915 PF07724 AAA domain (Cdc48 subfamily) KM401_18915 PF10431 C-terminal, D2-small domain, of ClpB protein KM401_18920 PF00227 Proteasome subunit KM401_18925 PF00589 Phage integrase family KM401_18925 PF02899 Phage integrase, N-terminal SAM-like domain KM401_18930 PF01134 Glucose inhibited division protein A KM401_18935 PF01396 Topoisomerase DNA binding C4 zinc finger KM401_18935 PF01751 Toprim domain KM401_18935 PF01131 DNA topoisomerase KM401_18945 PF00549 CoA-ligase KM401_18945 PF02629 CoA binding domain KM401_18950 PF08442 ATP-grasp domain KM401_18950 PF00549 CoA-ligase KM401_18955 PF01351 Ribonuclease HII KM401_18960 PF01926 50S ribosome-binding GTPase KM401_18965 PF10502 Signal peptidase, peptidase S26 KM401_18970 PF01245 Ribosomal protein L19 KM401_18975 PF01746 tRNA (Guanine-1)-methyltransferase KM401_18980 PF01782 RimM N-terminal domain KM401_18980 PF05239 PRC-barrel domain KM401_18990 PF00886 Ribosomal protein S16 KM401_18995 PF00448 SRP54-type protein, GTPase domain KM401_18995 PF02881 SRP54-type protein, helical bundle domain KM401_18995 PF02978 Signal peptide binding domain KM401_19000 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KM401_19005 PF00448 SRP54-type protein, GTPase domain KM401_19005 PF02881 SRP54-type protein, helical bundle domain KM401_19010 PF06470 SMC proteins Flexible Hinge Domain KM401_19010 PF02463 RecF/RecN/SMC N terminal domain KM401_19015 PF00035 Double-stranded RNA binding motif KM401_19015 PF14622 Ribonuclease-III-like KM401_19020 PF00550 Phosphopantetheine attachment site KM401_19030 PF00698 Acyl transferase domain KM401_19035 PF02504 Fatty acid synthesis protein KM401_19040 PF03061 Thioesterase superfamily KM401_19045 PF17191 RecG wedge domain KM401_19045 PF00271 Helicase conserved C-terminal domain KM401_19045 PF00270 DEAD/DEAH box helicase KM401_19050 PF02734 DAK2 domain KM401_19050 PF13684 Dihydroxyacetone kinase family KM401_19055 PF03780 Asp23 family, cell envelope-related function KM401_19060 PF00830 Ribosomal L28 family KM401_19065 PF08183 Stage V sporulation protein family KM401_19070 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain KM401_19070 PF04263 Thiamin pyrophosphokinase, catalytic domain KM401_19075 PF00834 Ribulose-phosphate 3 epimerase family KM401_19080 PF03193 RsgA GTPase KM401_19080 PF16745 RsgA N-terminal domain KM401_19085 PF03793 PASTA domain KM401_19085 PF00069 Protein kinase domain KM401_19095 PF04055 Radical SAM superfamily KM401_19100 PF01189 16S rRNA methyltransferase RsmB/F KM401_19100 PF01029 NusB family KM401_19105 PF02911 Formyl transferase, C-terminal domain KM401_19105 PF00551 Formyl transferase KM401_19110 PF01327 Polypeptide deformylase KM401_19115 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KM401_19115 PF00271 Helicase conserved C-terminal domain KM401_19115 PF17764 3′ DNA-binding domain (3′BD) KM401_19115 PF04851 Type III restriction enzyme, res subunit KM401_19115 PF18074 Primosomal protein N C-terminal domain KM401_19120 PF02441 Flavoprotein KM401_19120 PF04127 DNA / pantothenate metabolism flavoprotein KM401_19125 PF01192 RNA polymerase Rpb6 KM401_19130 PF00625 Guanylate kinase KM401_19135 PF04025 Domain of unknown function (DUF370) KM401_19140 PF03755 YicC-like family, N-terminal region KM401_19140 PF08340 Domain of unknown function (DUF1732) KM401_19145 PF00689 Cation transporting ATPase, C-terminus KM401_19145 PF00690 Cation transporter/ATPase, N-terminus KM401_19150 PF05670 NFACT protein RNA binding domain KM401_19155 PF00557 Metallopeptidase family M24 KM401_19155 PF01321 Creatinase/Prolidase N-terminal domain KM401_19185 PF00156 Phosphoribosyl transferase domain KM401_19190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KM401_19195 PF01180 Dihydroorotate dehydrogenase KM401_19200 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KM401_19200 PF00175 Oxidoreductase NAD-binding domain KM401_19205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM401_19205 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KM401_19205 PF02142 MGS-like domain KM401_19210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KM401_19210 PF00117 Glutamine amidotransferase class-I KM401_19215 PF01979 Amidohydrolase family KM401_19220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KM401_19220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KM401_19225 PF00860 Permease family KM401_19230 PF00156 Phosphoribosyl transferase domain KM401_19235 PF00849 RNA pseudouridylate synthase KM401_19235 PF01479 S4 domain KM401_19240 PF01252 Signal peptidase (SPase) II KM401_19250 PF08264 Anticodon-binding domain of tRNA KM401_19250 PF00133 tRNA synthetases class I (I, L, M and V) KM401_19250 PF06827 Zinc finger found in FPG and IleRS KM401_19255 PF05103 DivIVA protein KM401_19260 PF01479 S4 domain KM401_19260 PF17774 Putative RNA-binding domain in YlmH KM401_19265 PF02325 YGGT family KM401_19270 PF04472 Cell division protein SepF KM401_19275 PF01168 Alanine racemase, N-terminal domain KM401_19280 PF02578 Multi-copper polyphenol oxidoreductase laccase KM401_19285 PF05239 PRC-barrel domain KM401_19290 PF04539 Sigma-70 region 3 KM401_19290 PF04545 Sigma-70, region 4 KM401_19290 PF04542 Sigma-70 region 2 KM401_19295 PF04542 Sigma-70 region 2 KM401_19295 PF04545 Sigma-70, region 4 KM401_19300 PF03419 Sporulation factor SpoIIGA KM401_19305 PF12327 FtsZ family, C-terminal domain KM401_19305 PF00091 Tubulin/FtsZ family, GTPase domain KM401_19310 PF02491 SHS2 domain inserted in FTSA KM401_19315 PF03799 Cell division protein FtsQ KM401_19315 PF08478 POTRA domain, FtsQ-type KM401_19320 PF01565 FAD binding domain KM401_19320 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KM401_19325 PF04101 Glycosyltransferase family 28 C-terminal domain KM401_19325 PF03033 Glycosyltransferase family 28 N-terminal domain KM401_19330 PF01098 Cell cycle protein KM401_19335 PF02875 Mur ligase family, glutamate ligase domain KM401_19335 PF08245 Mur ligase middle domain KM401_19340 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KM401_19340 PF00953 Glycosyl transferase family 4 KM401_19345 PF01225 Mur ligase family, catalytic domain KM401_19345 PF02875 Mur ligase family, glutamate ligase domain KM401_19345 PF08245 Mur ligase middle domain KM401_19350 PF03793 PASTA domain KM401_19350 PF03717 Penicillin-binding Protein dimerisation domain KM401_19350 PF00905 Penicillin binding protein transpeptidase domain KM401_19355 PF03793 PASTA domain KM401_19355 PF00905 Penicillin binding protein transpeptidase domain KM401_19355 PF03717 Penicillin-binding Protein dimerisation domain KM401_19360 PF04977 Septum formation initiator KM401_19365 PF01795 MraW methylase family KM401_19370 PF10079 Bacillithiol biosynthesis BshC KM401_19375 PF02558 Ketopantoate reductase PanE/ApbA KM401_19375 PF08546 Ketopantoate reductase PanE/ApbA C terminal KM401_19380 PF00583 Acetyltransferase (GNAT) family KM401_19390 PF01783 Ribosomal L32p protein family KM401_19395 PF02620 Large ribosomal RNA subunit accumulation protein YceD KM401_19440 PF01510 N-acetylmuramoyl-L-alanine amidase KM401_19440 PF12123 N-acetylmuramoyl-l-alanine amidase KM401_19445 PF05105 Bacteriophage holin family KM401_19520 PF00574 Clp protease KM401_19530 PF03354 Phage Terminase KM401_19550 PF10137 Predicted nucleotide-binding protein containing TIR-like domain KM401_19555 PF00589 Phage integrase family KM401_19605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_19620 PF00692 dUTPase KM401_19635 PF04545 Sigma-70, region 4 KM401_19635 PF04539 Sigma-70 region 3 KM401_19635 PF04542 Sigma-70 region 2 KM401_19660 PF07319 Primosomal protein DnaI N-terminus KM401_19660 PF01695 IstB-like ATP binding protein KM401_19690 PF01381 Helix-turn-helix KM401_19705 PF01381 Helix-turn-helix KM401_19720 PF14659 Phage integrase, N-terminal SAM-like domain KM401_19720 PF00589 Phage integrase family KM401_19725 PF05636 HIGH Nucleotidyl Transferase KM401_19730 PF05362 Lon protease (S16) C-terminal proteolytic domain KM401_19730 PF13180 PDZ domain KM401_19735 PF01734 Patatin-like phospholipase KM401_19740 PF07670 Nucleoside recognition KM401_19745 PF01467 Cytidylyltransferase-like KM401_19760 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) KM401_19765 PF06133 Control of competence regulator ComK, YlbF/YmcA KM401_19770 PF00300 Histidine phosphatase superfamily (branch 1) KM401_19775 PF14003 YlbE-like protein KM401_19780 PF14071 Putative coat protein KM401_19785 PF14504 CAP-associated N-terminal KM401_19785 PF00188 Cysteine-rich secretory protein family KM401_19790 PF08868 YugN-like family KM401_19795 PF00795 Carbon-nitrogen hydrolase KM401_19800 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) KM401_19805 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KM401_19810 PF00510 Cytochrome c oxidase subunit III KM401_19815 PF00115 Cytochrome C and Quinol oxidase polypeptide I KM401_19820 PF00034 Cytochrome c KM401_19820 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KM401_19820 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KM401_19825 PF01040 UbiA prenyltransferase family KM401_19830 PF02628 Cytochrome oxidase assembly protein KM401_19835 PF02436 Conserved carboxylase domain KM401_19835 PF00682 HMGL-like KM401_19835 PF00364 Biotin-requiring enzyme KM401_19835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM401_19835 PF02785 Biotin carboxylase C-terminal domain KM401_19835 PF00289 Biotin carboxylase, N-terminal domain KM401_19840 PF01098 Cell cycle protein KM401_19845 PF07408 Protein of unknown function (DUF1507) KM401_19855 PF02562 PhoH-like protein KM401_19855 PF13638 PIN domain KM401_19865 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) KM401_19875 PF14036 YlaH-like protein KM401_19880 PF00009 Elongation factor Tu GTP binding domain KM401_19880 PF03144 Elongation factor Tu domain 2 KM401_19880 PF14492 Elongation Factor G, domain II KM401_19880 PF00679 Elongation factor G C-terminus KM401_19890 PF00459 Inositol monophosphatase family KM401_19900 PF06335 Protein of unknown function (DUF1054) KM401_19905 PF05256 Uncharacterised protein family (UPF0223) KM401_19910 PF01276 Orn/Lys/Arg decarboxylase, major domain KM401_19910 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KM401_19950 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_19950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM401_19955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM401_19955 PF02817 e3 binding domain KM401_19955 PF00364 Biotin-requiring enzyme KM401_19960 PF02779 Transketolase, pyrimidine binding domain KM401_19960 PF02780 Transketolase, C-terminal domain KM401_19965 PF00676 Dehydrogenase E1 component KM401_19975 PF01327 Polypeptide deformylase KM401_19985 PF07288 Protein of unknown function (DUF1447) KM401_19990 PF00753 Metallo-beta-lactamase superfamily KM401_19990 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KM401_19990 PF17770 Ribonuclease J C-terminal domain KM401_19995 PF02254 TrkA-N domain KM401_19995 PF02080 TrkA-C domain KM401_20005 PF01546 Peptidase family M20/M25/M40 KM401_20005 PF07687 Peptidase dimerisation domain KM401_20010 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KM401_20010 PF14602 Hexapeptide repeat of succinyl-transferase KM401_20010 PF00132 Bacterial transferase hexapeptide (six repeats) KM401_20015 PF03466 LysR substrate binding domain KM401_20015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_20030 PF04308 Ribonuclease H-like KM401_20040 PF08796 Protein of unknown function (DUF1797) KM401_20055 PF10388 EAL-domain associated signalling protein domain KM401_20055 PF00563 EAL domain KM401_20065 PF10518 TAT (twin-arginine translocation) pathway signal sequence KM401_20065 PF00149 Calcineurin-like phosphoesterase KM401_20075 PF02503 Polyphosphate kinase middle domain KM401_20075 PF13090 Polyphosphate kinase C-terminal domain 2 KM401_20075 PF17941 Polyphosphate kinase C-terminal domain 1 KM401_20075 PF13089 Polyphosphate kinase N-terminal domain KM401_20080 PF02541 Ppx/GppA phosphatase family KM401_20085 PF14177 YkyB-like protein KM401_20110 PF07690 Major Facilitator Superfamily KM401_20120 PF08267 Cobalamin-independent synthase, N-terminal domain KM401_20120 PF01717 Cobalamin-independent synthase, Catalytic domain KM401_20130 PF14040 Deoxyribonuclease NucA/NucB KM401_20140 PF00512 His Kinase A (phospho-acceptor) domain KM401_20140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_20150 PF00155 Aminotransferase class I and II KM401_20155 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM401_20155 PF00356 Bacterial regulatory proteins, lacI family KM401_20160 PF00528 Binding-protein-dependent transport system inner membrane component KM401_20165 PF00528 Binding-protein-dependent transport system inner membrane component KM401_20170 PF13416 Bacterial extracellular solute-binding protein KM401_20175 PF00128 Alpha amylase, catalytic domain KM401_20175 PF02903 Alpha amylase, N-terminal ig-like domain KM401_20175 PF16657 Maltogenic Amylase, C-terminal domain KM401_20180 PF00128 Alpha amylase, catalytic domain KM401_20180 PF16657 Maltogenic Amylase, C-terminal domain KM401_20185 PF00005 ABC transporter KM401_20185 PF17912 MalK OB fold domain KM401_20185 PF03459 TOBE domain KM401_20225 PF02803 Thiolase, C-terminal domain KM401_20225 PF00108 Thiolase, N-terminal domain KM401_20230 PF00293 NUDIX domain KM401_20260 PF03551 Transcriptional regulator PadR-like family KM401_20275 PF01008 Initiation factor 2 subunit family KM401_20280 PF01636 Phosphotransferase enzyme family KM401_20285 PF00795 Carbon-nitrogen hydrolase KM401_20290 PF00155 Aminotransferase class I and II KM401_20295 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain KM401_20295 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain KM401_20305 PF00596 Class II Aldolase and Adducin N-terminal domain KM401_20310 PF03079 ARD/ARD' family KM401_20330 PF08448 PAS fold KM401_20330 PF00990 Diguanylate cyclase, GGDEF domain KM401_20335 PF00881 Nitroreductase family KM401_20350 PF05524 PEP-utilising enzyme, N-terminal KM401_20350 PF00391 PEP-utilising enzyme, mobile domain KM401_20350 PF02896 PEP-utilising enzyme, TIM barrel domain KM401_20355 PF00381 PTS HPr component phosphorylation site KM401_20360 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KM401_20360 PF00367 phosphotransferase system, EIIB KM401_20360 PF02378 Phosphotransferase system, EIIC KM401_20365 PF03123 CAT RNA binding domain KM401_20365 PF00874 PRD domain KM401_20375 PF07702 UTRA domain KM401_20375 PF00392 Bacterial regulatory proteins, gntR family KM401_20380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KM401_20385 PF01979 Amidohydrolase family KM401_20395 PF04079 Segregation and condensation complex subunit ScpB KM401_20400 PF02616 Segregation and condensation protein ScpA KM401_20410 PF03745 Domain of unknown function (DUF309) KM401_20415 PF00583 Acetyltransferase (GNAT) family KM401_20420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KM401_20425 PF06207 Protein of unknown function (DUF1002) KM401_20435 PF03323 Bacillus/Clostridium GerA spore germination protein KM401_20440 PF14097 Stage V sporulation protein AE1 KM401_20445 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM401_20450 PF07451 Stage V sporulation protein AD (SpoVAD) KM401_20455 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM401_20460 PF13782 Stage V sporulation protein AB KM401_20465 PF12164 Stage V sporulation protein AA KM401_20475 PF00209 Sodium:neurotransmitter symporter family KM401_20480 PF04542 Sigma-70 region 2 KM401_20480 PF04539 Sigma-70 region 3 KM401_20480 PF04545 Sigma-70, region 4 KM401_20485 PF13581 Histidine kinase-like ATPase domain KM401_20490 PF01740 STAS domain KM401_20495 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_20495 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_20500 PF00392 Bacterial regulatory proteins, gntR family KM401_20505 PF00005 ABC transporter KM401_20520 PF01047 MarR family KM401_20530 PF00860 Permease family KM401_20535 PF01544 CorA-like Mg2+ transporter protein KM401_20540 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KM401_20540 PF00591 Glycosyl transferase family, a/b domain KM401_20540 PF02885 Glycosyl transferase family, helical bundle domain KM401_20545 PF01048 Phosphorylase superfamily KM401_20550 PF01676 Metalloenzyme superfamily KM401_20560 PF00589 Phage integrase family KM401_20560 PF02899 Phage integrase, N-terminal SAM-like domain KM401_20565 PF14004 Protein of unknown function (DUF4227) KM401_20570 PF01475 Ferric uptake regulator family KM401_20575 PF01944 Stage II sporulation protein M KM401_20585 PF00293 NUDIX domain KM401_20590 PF13072 Mother cell inhibitor of FtsZ KM401_20595 PF00248 Aldo/keto reductase family KM401_20600 PF00248 Aldo/keto reductase family KM401_20605 PF13673 Acetyltransferase (GNAT) domain KM401_20605 PF04229 GrpB protein KM401_20615 PF00565 Staphylococcal nuclease homologue KM401_20615 PF00149 Calcineurin-like phosphoesterase KM401_20615 PF02872 5'-nucleotidase, C-terminal domain KM401_20615 PF00746 LPXTG cell wall anchor motif KM401_20625 PF12146 Serine aminopeptidase, S33 KM401_20630 PF13726 Na+-H+ antiporter family KM401_20630 PF03553 Na+/H+ antiporter family KM401_20635 PF00356 Bacterial regulatory proteins, lacI family KM401_20640 PF00583 Acetyltransferase (GNAT) family KM401_20645 PF12146 Serine aminopeptidase, S33 KM401_20650 PF10827 Protein of unknown function (DUF2552) KM401_20660 PF01872 RibD C-terminal domain KM401_20660 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM401_20665 PF00677 Lumazine binding domain KM401_20670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KM401_20670 PF00925 GTP cyclohydrolase II KM401_20675 PF00885 6,7-dimethyl-8-ribityllumazine synthase KM401_20685 PF06968 Biotin and Thiamin Synthesis associated domain KM401_20685 PF04055 Radical SAM superfamily KM401_20690 PF13847 Methyltransferase domain KM401_20695 PF12697 Alpha/beta hydrolase family KM401_20695 PF08241 Methyltransferase domain KM401_20700 PF00155 Aminotransferase class I and II KM401_20710 PF00202 Aminotransferase class-III KM401_20720 PF03553 Na+/H+ antiporter family KM401_20725 PF02872 5'-nucleotidase, C-terminal domain KM401_20725 PF00149 Calcineurin-like phosphoesterase KM401_20735 PF01037 Lrp/AsnC ligand binding domain KM401_20735 PF13404 AsnC-type helix-turn-helix domain KM401_20750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KM401_20750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KM401_20755 PF00202 Aminotransferase class-III KM401_20760 PF00696 Amino acid kinase family KM401_20765 PF01960 ArgJ family KM401_20770 PF02774 Semialdehyde dehydrogenase, dimerisation domain KM401_20770 PF01118 Semialdehyde dehydrogenase, NAD binding domain KM401_20780 PF00106 short chain dehydrogenase KM401_20790 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM401_20790 PF03807 NADP oxidoreductase coenzyme F420-dependent KM401_20795 PF03313 Serine dehydratase alpha chain KM401_20800 PF01842 ACT domain KM401_20800 PF03315 Serine dehydratase beta chain KM401_20810 PF12706 Beta-lactamase superfamily domain KM401_20810 PF00753 Metallo-beta-lactamase superfamily KM401_20820 PF11798 IMS family HHH motif KM401_20820 PF11799 impB/mucB/samB family C-terminal domain KM401_20820 PF00817 impB/mucB/samB family KM401_20830 PF01546 Peptidase family M20/M25/M40 KM401_20830 PF07687 Peptidase dimerisation domain KM401_20835 PF13302 Acetyltransferase (GNAT) domain KM401_20850 PF03734 L,D-transpeptidase catalytic domain KM401_20855 PF11728 Putative aromatic acid exporter C-terminal domain KM401_20855 PF06081 Aromatic acid exporter family member 1 KM401_20860 PF00005 ABC transporter KM401_20865 PF00528 Binding-protein-dependent transport system inner membrane component KM401_20870 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM401_20875 PF06491 Disulphide isomerase KM401_20880 PF11208 Protein of unknown function (DUF2992) KM401_20890 PF01098 Cell cycle protein KM401_20895 PF02817 e3 binding domain KM401_20895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM401_20895 PF00364 Biotin-requiring enzyme KM401_20900 PF02780 Transketolase, C-terminal domain KM401_20900 PF02779 Transketolase, pyrimidine binding domain KM401_20905 PF00676 Dehydrogenase E1 component KM401_20910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM401_20910 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_20915 PF00871 Acetokinase family KM401_20920 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KM401_20920 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KM401_20925 PF01515 Phosphate acetyl/butaryl transferase KM401_20930 PF00158 Sigma-54 interaction domain KM401_20930 PF00989 PAS fold KM401_20930 PF02954 Bacterial regulatory protein, Fis family KM401_20940 PF03009 Glycerophosphoryl diester phosphodiesterase family KM401_20945 PF14174 YycC-like protein KM401_20955 PF08769 Sporulation initiation factor Spo0A C terminal KM401_20955 PF00072 Response regulator receiver domain KM401_20960 PF05580 SpoIVB peptidase S55 KM401_20960 PF17820 PDZ domain KM401_20965 PF13476 AAA domain KM401_20970 PF01316 Arginine repressor, DNA binding domain KM401_20970 PF02863 Arginine repressor, C-terminal domain KM401_20975 PF01728 FtsJ-like methyltransferase KM401_20975 PF01479 S4 domain KM401_20980 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KM401_20980 PF02779 Transketolase, pyrimidine binding domain KM401_20980 PF02780 Transketolase, C-terminal domain KM401_20985 PF00348 Polyprenyl synthetase KM401_20990 PF02609 Exonuclease VII small subunit KM401_20995 PF02601 Exonuclease VII, large subunit KM401_20995 PF13742 OB-fold nucleic acid binding domain KM401_21000 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KM401_21000 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KM401_21005 PF01029 NusB family KM401_21010 PF03780 Asp23 family, cell envelope-related function KM401_21015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM401_21015 PF02785 Biotin carboxylase C-terminal domain KM401_21015 PF00289 Biotin carboxylase, N-terminal domain KM401_21020 PF00364 Biotin-requiring enzyme KM401_21030 PF12685 SpoIIIAH-like protein KM401_21040 PF09581 Stage III sporulation protein AF (Spore_III_AF) KM401_21045 PF09546 Stage III sporulation protein AE (spore_III_AE) KM401_21050 PF06686 Stage III sporulation protein AC/AD protein family KM401_21055 PF06686 Stage III sporulation protein AC/AD protein family KM401_21060 PF09548 Stage III sporulation protein AB (spore_III_AB) KM401_21085 PF09285 Elongation factor P, C-terminal KM401_21085 PF08207 Elongation factor P (EF-P) KOW-like domain KM401_21085 PF01132 Elongation factor P (EF-P) OB domain KM401_21090 PF01321 Creatinase/Prolidase N-terminal domain KM401_21090 PF00557 Metallopeptidase family M24 KM401_21095 PF01220 Dehydroquinase class II KM401_21100 PF11085 Conserved membrane protein YqhR KM401_21105 PF07136 Protein of unknown function (DUF1385) KM401_21115 PF13419 Haloacid dehalogenase-like hydrolase KM401_21120 PF01325 Iron dependent repressor, N-terminal DNA binding domain KM401_21120 PF02742 Iron dependent repressor, metal binding and dimerisation domain KM401_21135 PF03099 Biotin/lipoate A/B protein ligase family KM401_21140 PF00581 Rhodanese-like domain KM401_21145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM401_21145 PF00356 Bacterial regulatory proteins, lacI family KM401_21155 PF00893 Small Multidrug Resistance protein KM401_21160 PF00893 Small Multidrug Resistance protein KM401_21200 PF00392 Bacterial regulatory proteins, gntR family KM401_21215 PF02347 Glycine cleavage system P-protein KM401_21220 PF02347 Glycine cleavage system P-protein KM401_21225 PF01571 Aminomethyltransferase folate-binding domain KM401_21225 PF08669 Glycine cleavage T-protein C-terminal barrel domain KM401_21230 PF00271 Helicase conserved C-terminal domain KM401_21230 PF00176 SNF2 family N-terminal domain KM401_21235 PF11079 Bacterial protein YqhG of unknown function KM401_21255 PF14038 YqzE-like protein KM401_21260 PF01202 Shikimate kinase KM401_21285 PF07963 Prokaryotic N-terminal methylation motif KM401_21295 PF00482 Type II secretion system (T2SS), protein F KM401_21300 PF00437 Type II/IV secretion system protein KM401_21310 PF11117 Protein of unknown function (DUF2626) KM401_21315 PF00375 Sodium:dicarboxylate symporter family KM401_21350 PF03033 Glycosyltransferase family 28 N-terminal domain KM401_21350 PF04101 Glycosyltransferase family 28 C-terminal domain KM401_21355 PF02310 B12 binding domain KM401_21355 PF02607 B12 binding domain KM401_21355 PF02965 Vitamin B12 dependent methionine synthase, activation domain KM401_21355 PF00809 Pterin binding enzyme KM401_21355 PF02574 Homocysteine S-methyltransferase KM401_21360 PF02219 Methylenetetrahydrofolate reductase KM401_21360 PF02574 Homocysteine S-methyltransferase KM401_21365 PF01053 Cys/Met metabolism PLP-dependent enzyme KM401_21370 PF01053 Cys/Met metabolism PLP-dependent enzyme KM401_21380 PF01022 Bacterial regulatory protein, arsR family KM401_21390 PF00753 Metallo-beta-lactamase superfamily KM401_21395 PF10958 Protein of unknown function (DUF2759) KM401_21400 PF00480 ROK family KM401_21405 PF06014 Bacterial protein of unknown function (DUF910) KM401_21410 PF01812 5-formyltetrahydrofolate cyclo-ligase family KM401_21415 PF00471 Ribosomal protein L33 KM401_21420 PF00483 Nucleotidyl transferase KM401_21425 PF01895 PhoU domain KM401_21430 PF00005 ABC transporter KM401_21435 PF00528 Binding-protein-dependent transport system inner membrane component KM401_21440 PF00528 Binding-protein-dependent transport system inner membrane component KM401_21445 PF12849 PBP superfamily domain KM401_21450 PF03717 Penicillin-binding Protein dimerisation domain KM401_21450 PF00905 Penicillin binding protein transpeptidase domain KM401_21455 PF07690 Major Facilitator Superfamily KM401_21460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KM401_21460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KM401_21480 PF04551 GcpE protein KM401_21485 PF01475 Ferric uptake regulator family KM401_21490 PF00950 ABC 3 transport family KM401_21495 PF00005 ABC transporter KM401_21500 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_21500 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_21505 PF11116 Protein of unknown function (DUF2624) KM401_21510 PF01261 Xylose isomerase-like TIM barrel KM401_21515 PF00270 DEAD/DEAH box helicase KM401_21515 PF00271 Helicase conserved C-terminal domain KM401_21525 PF02401 LytB protein KM401_21530 PF01784 NIF3 (NGG1p interacting factor 3) KM401_21535 PF04816 tRNA (adenine(22)-N(1))-methyltransferase KM401_21540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KM401_21545 PF03979 Sigma-70 factor, region 1.1 KM401_21545 PF00140 Sigma-70 factor, region 1.2 KM401_21545 PF04542 Sigma-70 region 2 KM401_21545 PF04539 Sigma-70 region 3 KM401_21545 PF04545 Sigma-70, region 4 KM401_21550 PF08275 DNA primase catalytic core, N-terminal domain KM401_21550 PF01807 CHC2 zinc finger KM401_21550 PF10410 DnaB-helicase binding domain of primase KM401_21560 PF03618 Kinase/pyrophosphorylase KM401_21565 PF00571 CBS domain KM401_21565 PF08279 HTH domain KM401_21570 PF02565 Recombination protein O C terminal KM401_21570 PF11967 Recombination protein O N terminal KM401_21580 PF07650 KH domain KM401_21580 PF01926 50S ribosome-binding GTPase KM401_21585 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM401_21590 PF01219 Prokaryotic diacylglycerol kinase KM401_21595 PF02130 Uncharacterized protein family UPF0054 KM401_21600 PF07698 7TM receptor with intracellular HD hydrolase KM401_21600 PF07697 7TM-HD extracellular KM401_21600 PF01966 HD domain KM401_21605 PF02562 PhoH-like protein KM401_21610 PF06898 Putative stage IV sporulation protein YqfD KM401_21615 PF07873 YabP family KM401_21620 PF09424 Yqey-like protein KM401_21625 PF01165 Ribosomal protein S21 KM401_21630 PF04055 Radical SAM superfamily KM401_21630 PF01938 TRAM domain KM401_21630 PF00919 Uncharacterized protein family UPF0004 KM401_21635 PF04452 RNA methyltransferase KM401_21645 PF00684 DnaJ central domain KM401_21645 PF00226 DnaJ domain KM401_21645 PF01556 DnaJ C terminal domain KM401_21650 PF00012 Hsp70 protein KM401_21655 PF01025 GrpE KM401_21660 PF01628 HrcA protein C terminal domain KM401_21665 PF06969 HemN C-terminal domain KM401_21665 PF04055 Radical SAM superfamily KM401_21670 PF01638 HxlR-like helix-turn-helix KM401_21675 PF00679 Elongation factor G C-terminus KM401_21675 PF00009 Elongation factor Tu GTP binding domain KM401_21675 PF03144 Elongation factor Tu domain 2 KM401_21675 PF06421 GTP-binding protein LepA C-terminus KM401_21685 PF03418 Germination protease KM401_21690 PF01649 Ribosomal protein S20 KM401_21695 PF06144 DNA polymerase III, delta subunit KM401_21700 PF14141 YqzM-like protein KM401_21705 PF00753 Metallo-beta-lactamase superfamily KM401_21705 PF13567 Domain of unknown function (DUF4131) KM401_21705 PF03772 Competence protein KM401_21710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM401_21715 PF10531 SLBB domain KM401_21720 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM401_21720 PF03807 NADP oxidoreductase coenzyme F420-dependent KM401_21725 PF13649 Methyltransferase domain KM401_21735 PF01966 HD domain KM401_21740 PF01467 Cytidylyltransferase-like KM401_21745 PF01985 CRS1 / YhbY (CRM) domain KM401_21750 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KM401_21750 PF01488 Shikimate / quinate 5-dehydrogenase KM401_21750 PF08501 Shikimate dehydrogenase substrate binding domain KM401_21755 PF01926 50S ribosome-binding GTPase KM401_21770 PF02666 Phosphatidylserine decarboxylase KM401_21775 PF04542 Sigma-70 region 2 KM401_21775 PF04545 Sigma-70, region 4 KM401_21785 PF16244 Domain of unknown function (DUF4901) KM401_21790 PF00471 Ribosomal protein L33 KM401_21795 PF00881 Nitroreductase family KM401_21800 PF04607 Region found in RelA / SpoT proteins KM401_21810 PF00245 Alkaline phosphatase KM401_21820 PF00561 alpha/beta hydrolase fold KM401_21820 PF08386 TAP-like protein KM401_21855 PF13860 FlgD Ig-like domain KM401_21855 PF05922 Peptidase inhibitor I9 KM401_21855 PF02225 PA domain KM401_21855 PF00082 Subtilase family KM401_21860 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KM401_21875 PF07681 DoxX KM401_21905 PF00005 ABC transporter KM401_21910 PF01032 FecCD transport family KM401_21915 PF01497 Periplasmic binding protein KM401_21920 PF14143 YrhC-like protein KM401_21925 PF00465 Iron-containing alcohol dehydrogenase KM401_21925 PF00171 Aldehyde dehydrogenase family KM401_21930 PF01053 Cys/Met metabolism PLP-dependent enzyme KM401_21935 PF00291 Pyridoxal-phosphate dependent enzyme KM401_21940 PF01048 Phosphorylase superfamily KM401_21945 PF08241 Methyltransferase domain KM401_21960 PF00905 Penicillin binding protein transpeptidase domain KM401_21960 PF03717 Penicillin-binding Protein dimerisation domain KM401_21965 PF03449 Transcription elongation factor, N-terminal KM401_21965 PF01272 Transcription elongation factor, GreA/GreB, C-term KM401_21970 PF00485 Phosphoribulokinase / Uridine kinase family KM401_21975 PF01136 Peptidase family U32 KM401_21975 PF16325 Peptidase family U32 C-terminal domain KM401_21980 PF01136 Peptidase family U32 KM401_21985 PF01596 O-methyltransferase KM401_21990 PF02618 YceG-like family KM401_21995 PF06949 Protein of unknown function (DUF1292) KM401_22000 PF03652 Holliday junction resolvase KM401_22005 PF06135 IreB regulatory phosphoprotein KM401_22010 PF02272 DHHA1 domain KM401_22010 PF01411 tRNA synthetases class II (A) KM401_22010 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM401_22020 PF01594 AI-2E family transporter KM401_22040 PF13538 UvrD-like helicase C-terminal domain KM401_22040 PF14490 Helix-hairpin-helix containing domain KM401_22040 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KM401_22055 PF00266 Aminotransferase class-V KM401_22060 PF02082 Transcriptional regulator KM401_22065 PF16193 AAA C-terminal domain KM401_22065 PF12002 MgsA AAA+ ATPase C terminal KM401_22065 PF05496 Holliday junction DNA helicase RuvB P-loop domain KM401_22075 PF00899 ThiF family KM401_22080 PF02938 GAD domain KM401_22080 PF00152 tRNA synthetases class II (D, K and N) KM401_22080 PF01336 OB-fold nucleic acid binding domain KM401_22085 PF13393 Histidyl-tRNA synthetase KM401_22085 PF03129 Anticodon binding domain KM401_22095 PF02580 D-Tyr-tRNA(Tyr) deacylase KM401_22100 PF13291 ACT domain KM401_22100 PF04607 Region found in RelA / SpoT proteins KM401_22100 PF02824 TGS domain KM401_22105 PF00156 Phosphoribosyl transferase domain KM401_22110 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KM401_22110 PF17768 RecJ OB domain KM401_22110 PF01368 DHH family KM401_22110 PF02272 DHHA1 domain KM401_22115 PF01545 Cation efflux family KM401_22115 PF16916 Dimerisation domain of Zinc Transporter KM401_22120 PF07549 SecD/SecF GG Motif KM401_22120 PF02355 Protein export membrane protein KM401_22125 PF13797 Post-transcriptional regulator KM401_22130 PF14667 Polysaccharide biosynthesis C-terminal domain KM401_22130 PF01943 Polysaccharide biosynthesis protein KM401_22135 PF04239 Protein of unknown function (DUF421) KM401_22145 PF02699 Preprotein translocase subunit KM401_22150 PF01702 Queuine tRNA-ribosyltransferase KM401_22155 PF02547 Queuosine biosynthesis protein KM401_22160 PF11146 Protein of unknown function (DUF2905) KM401_22165 PF17864 RuvB AAA lid domain KM401_22165 PF05491 RuvB C-terminal winged helix domain KM401_22165 PF05496 Holliday junction DNA helicase RuvB P-loop domain KM401_22170 PF07499 RuvA, C-terminal domain KM401_22170 PF01330 RuvA N terminal domain KM401_22175 PF01497 Periplasmic binding protein KM401_22185 PF00892 EamA-like transporter family KM401_22190 PF00892 EamA-like transporter family KM401_22195 PF01022 Bacterial regulatory protein, arsR family KM401_22210 PF01476 LysM domain KM401_22215 PF02445 Quinolinate synthetase A protein KM401_22220 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KM401_22220 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KM401_22225 PF00890 FAD binding domain KM401_22225 PF02910 Fumarate reductase flavoprotein C-term KM401_22230 PF00266 Aminotransferase class-V KM401_22235 PF02829 3H domain KM401_22235 PF08279 HTH domain KM401_22240 PF03473 MOSC domain KM401_22240 PF03475 3-alpha domain KM401_22245 PF00800 Prephenate dehydratase KM401_22245 PF01842 ACT domain KM401_22250 PF02687 FtsX-like permease family KM401_22255 PF02687 FtsX-like permease family KM401_22260 PF00005 ABC transporter KM401_22270 PF00072 Response regulator receiver domain KM401_22270 PF00486 Transcriptional regulatory protein, C terminal KM401_22275 PF09269 Domain of unknown function (DUF1967) KM401_22275 PF01926 50S ribosome-binding GTPase KM401_22275 PF01018 GTP1/OBG KM401_22280 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM401_22280 PF14682 Sporulation initiation phospho-transferase B, C-terminal KM401_22285 PF01016 Ribosomal L27 protein KM401_22290 PF04327 Cysteine protease Prp KM401_22295 PF00829 Ribosomal prokaryotic L21 protein KM401_22300 PF10150 Ribonuclease E/G family KM401_22300 PF00575 S1 RNA binding domain KM401_22305 PF02163 Peptidase family M50 KM401_22310 PF01551 Peptidase family M23 KM401_22315 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KM401_22320 PF03775 Septum formation inhibitor MinC, C-terminal domain KM401_22330 PF04085 rod shape-determining protein MreC KM401_22340 PF04002 RadC-like JAB domain KM401_22345 PF02545 Maf-like protein KM401_22355 PF02875 Mur ligase family, glutamate ligase domain KM401_22355 PF08245 Mur ligase middle domain KM401_22360 PF10458 Valyl tRNA synthetase tRNA binding arm KM401_22360 PF00133 tRNA synthetases class I (I, L, M and V) KM401_22360 PF08264 Anticodon-binding domain of tRNA KM401_22370 PF01476 LysM domain KM401_22375 PF00202 Aminotransferase class-III KM401_22380 PF00490 Delta-aminolevulinic acid dehydratase KM401_22385 PF02602 Uroporphyrinogen-III synthase HemD KM401_22390 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KM401_22390 PF03900 Porphobilinogen deaminase, C-terminal domain KM401_22395 PF01578 Cytochrome C assembly protein KM401_22400 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KM401_22400 PF01488 Shikimate / quinate 5-dehydrogenase KM401_22400 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KM401_22405 PF01047 MarR family KM401_22410 PF02566 OsmC-like protein KM401_22415 PF01926 50S ribosome-binding GTPase KM401_22420 PF05362 Lon protease (S16) C-terminal proteolytic domain KM401_22420 PF00004 ATPase family associated with various cellular activities (AAA) KM401_22420 PF02190 ATP-dependent protease La (LON) substrate-binding domain KM401_22425 PF00004 ATPase family associated with various cellular activities (AAA) KM401_22425 PF05362 Lon protease (S16) C-terminal proteolytic domain KM401_22430 PF10431 C-terminal, D2-small domain, of ClpB protein KM401_22430 PF06689 ClpX C4-type zinc finger KM401_22430 PF07724 AAA domain (Cdc48 subfamily) KM401_22435 PF05697 Bacterial trigger factor protein (TF) KM401_22435 PF05698 Bacterial trigger factor protein (TF) C-terminus KM401_22435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KM401_22450 PF08000 Bacterial PH domain KM401_22450 PF11724 YvbH-like oligomerisation region KM401_22470 PF12850 Calcineurin-like phosphoesterase superfamily domain KM401_22475 PF01725 Ham1 family KM401_22480 PF01138 3' exoribonuclease family, domain 1 KM401_22480 PF03725 3' exoribonuclease family, domain 2 KM401_22485 PF10646 Sporulation and spore germination KM401_22490 PF01177 Asp/Glu/Hydantoin racemase KM401_22495 PF07690 Major Facilitator Superfamily KM401_22505 PF00440 Bacterial regulatory proteins, tetR family KM401_22520 PF00196 Bacterial regulatory proteins, luxR family KM401_22525 PF00860 Permease family KM401_22535 PF07969 Amidohydrolase family KM401_22540 PF07969 Amidohydrolase family KM401_22545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_22550 PF00528 Binding-protein-dependent transport system inner membrane component KM401_22550 PF12911 N-terminal TM domain of oligopeptide transport permease C KM401_22555 PF00528 Binding-protein-dependent transport system inner membrane component KM401_22560 PF00005 ABC transporter KM401_22560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_22565 PF00005 ABC transporter KM401_22565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM401_22570 PF06580 Histidine kinase KM401_22570 PF07694 5TMR of 5TMR-LYT KM401_22570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_22575 PF04397 LytTr DNA-binding domain KM401_22575 PF00072 Response regulator receiver domain KM401_22590 PF04024 PspC domain KM401_22595 PF01381 Helix-turn-helix KM401_22595 PF07883 Cupin domain KM401_22600 PF13536 Putative multidrug resistance efflux transporter KM401_22605 PF00230 Major intrinsic protein KM401_22610 PF02082 Transcriptional regulator KM401_22620 PF00005 ABC transporter KM401_22620 PF13732 Domain of unknown function (DUF4162) KM401_22625 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) KM401_22635 PF01618 MotA/TolQ/ExbB proton channel family KM401_22640 PF02557 D-alanyl-D-alanine carboxypeptidase KM401_22645 PF03061 Thioesterase superfamily KM401_22650 PF13183 4Fe-4S dicluster domain KM401_22650 PF13085 2Fe-2S iron-sulfur cluster binding domain KM401_22655 PF00890 FAD binding domain KM401_22655 PF02910 Fumarate reductase flavoprotein C-term KM401_22660 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KM401_22665 PF10702 Protein of unknown function (DUF2507) KM401_22670 PF08459 UvrC Helix-hairpin-helix N-terminal KM401_22670 PF02151 UvrB/uvrC motif KM401_22670 PF01541 GIY-YIG catalytic domain KM401_22675 PF00085 Thioredoxin KM401_22680 PF01012 Electron transfer flavoprotein domain KM401_22680 PF00766 Electron transfer flavoprotein FAD-binding domain KM401_22685 PF01012 Electron transfer flavoprotein domain KM401_22690 PF00378 Enoyl-CoA hydratase/isomerase KM401_22695 PF00440 Bacterial regulatory proteins, tetR family KM401_22695 PF08359 YsiA-like protein, C-terminal region KM401_22700 PF13193 AMP-binding enzyme C-terminal domain KM401_22700 PF00501 AMP-binding enzyme KM401_22710 PF01497 Periplasmic binding protein KM401_22715 PF01032 FecCD transport family KM401_22720 PF05163 DinB family KM401_22750 PF00005 ABC transporter KM401_22755 PF00512 His Kinase A (phospho-acceptor) domain KM401_22755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_22760 PF00486 Transcriptional regulatory protein, C terminal KM401_22760 PF00072 Response regulator receiver domain KM401_22770 PF09962 Uncharacterized conserved protein (DUF2196) KM401_22775 PF17785 PUA-like domain KM401_22775 PF10672 S-adenosylmethionine-dependent methyltransferase KM401_22785 PF03992 Antibiotic biosynthesis monooxygenase KM401_22790 PF04203 Sortase domain KM401_22795 PF00005 ABC transporter KM401_22800 PF01032 FecCD transport family KM401_22805 PF01497 Periplasmic binding protein KM401_22810 PF05031 Iron Transport-associated domain KM401_22820 PF05031 Iron Transport-associated domain KM401_22825 PF05525 Branched-chain amino acid transport protein KM401_22830 PF00849 RNA pseudouridylate synthase KM401_22830 PF01479 S4 domain KM401_22835 PF00488 MutS domain V KM401_22835 PF01713 Smr domain KM401_22840 PF02811 PHP domain KM401_22840 PF14791 DNA polymerase beta thumb KM401_22840 PF14716 Helix-hairpin-helix domain KM401_22845 PF02674 Colicin V production protein KM401_22850 PF05164 Cell division protein ZapA KM401_22855 PF01351 Ribonuclease HII KM401_22855 PF11858 Domain of unknown function (DUF3378) KM401_22875 PF01336 OB-fold nucleic acid binding domain KM401_22875 PF00152 tRNA synthetases class II (D, K and N) KM401_22880 PF03484 tRNA synthetase B5 domain KM401_22880 PF03147 Ferredoxin-fold anticodon binding domain KM401_22880 PF01588 Putative tRNA binding domain KM401_22880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KM401_22880 PF03483 B3/4 domain KM401_22885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KM401_22885 PF01409 tRNA synthetases class II core domain (F) KM401_22890 PF00588 SpoU rRNA Methylase family KM401_22890 PF08032 RNA 2'-O ribose methyltransferase substrate binding KM401_22895 PF14098 Small, acid-soluble spore protein I KM401_22900 PF01966 HD domain KM401_22925 PF07690 Major Facilitator Superfamily KM401_22935 PF00440 Bacterial regulatory proteins, tetR family KM401_22935 PF16859 Tetracyclin repressor-like, C-terminal domain KM401_22940 PF05343 M42 glutamyl aminopeptidase KM401_22950 PF00453 Ribosomal protein L20 KM401_22955 PF01632 Ribosomal protein L35 KM401_22960 PF00707 Translation initiation factor IF-3, C-terminal domain KM401_22960 PF05198 Translation initiation factor IF-3, N-terminal domain KM401_22965 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM401_22965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM401_22965 PF03129 Anticodon binding domain KM401_22965 PF02824 TGS domain KM401_22970 PF08812 YtxC-like family KM401_22975 PF07319 Primosomal protein DnaI N-terminus KM401_22975 PF01695 IstB-like ATP binding protein KM401_22980 PF07261 Replication initiation and membrane attachment KM401_22985 PF03477 ATP cone domain KM401_22990 PF02675 S-adenosylmethionine decarboxylase KM401_22995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KM401_22995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KM401_23000 PF01121 Dephospho-CoA kinase KM401_23005 PF02659 Putative manganese efflux pump KM401_23010 PF06827 Zinc finger found in FPG and IleRS KM401_23010 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KM401_23010 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KM401_23015 PF00476 DNA polymerase family A KM401_23015 PF01367 5'-3' exonuclease, C-terminal SAM fold KM401_23015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KM401_23020 PF16736 Single Cache-like KM401_23020 PF00989 PAS fold KM401_23020 PF00512 His Kinase A (phospho-acceptor) domain KM401_23020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_23025 PF00072 Response regulator receiver domain KM401_23025 PF00486 Transcriptional regulatory protein, C terminal KM401_23040 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM401_23040 PF00056 lactate/malate dehydrogenase, NAD binding domain KM401_23045 PF00180 Isocitrate/isopropylmalate dehydrogenase KM401_23050 PF00285 Citrate synthase, C-terminal domain KM401_23055 PF04284 Protein of unknown function (DUF441) KM401_23060 PF01594 AI-2E family transporter KM401_23065 PF04186 FxsA cytoplasmic membrane protein KM401_23070 PF00391 PEP-utilising enzyme, mobile domain KM401_23070 PF02887 Pyruvate kinase, alpha/beta domain KM401_23070 PF00224 Pyruvate kinase, barrel domain KM401_23075 PF00365 Phosphofructokinase KM401_23080 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KM401_23085 PF01039 Carboxyl transferase domain KM401_23085 PF17848 Acetyl-coA carboxylase zinc finger domain KM401_23090 PF00392 Bacterial regulatory proteins, gntR family KM401_23095 PF00390 Malic enzyme, N-terminal domain KM401_23095 PF03949 Malic enzyme, NAD binding domain KM401_23100 PF02811 PHP domain KM401_23100 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KM401_23100 PF07733 Bacterial DNA polymerase III alpha NTPase domain KM401_23100 PF01336 OB-fold nucleic acid binding domain KM401_23100 PF14579 Helix-hairpin-helix motif KM401_23105 PF14034 Sporulation protein YtrH KM401_23115 PF01368 DHH family KM401_23115 PF02272 DHHA1 domain KM401_23120 PF14007 YtpI-like protein KM401_23135 PF03061 Thioesterase superfamily KM401_23135 PF00571 CBS domain KM401_23135 PF07085 DRTGG domain KM401_23135 PF00392 Bacterial regulatory proteins, gntR family KM401_23150 PF01321 Creatinase/Prolidase N-terminal domain KM401_23150 PF00557 Metallopeptidase family M24 KM401_23155 PF11518 Protein of unknown function (DUF3221) KM401_23185 PF12746 GNAT acetyltransferase KM401_23190 PF07883 Cupin domain KM401_23200 PF01381 Helix-turn-helix KM401_23210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KM401_23210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KM401_23220 PF00582 Universal stress protein family KM401_23240 PF00206 Lyase KM401_23240 PF14698 Argininosuccinate lyase C-terminal KM401_23245 PF00764 Arginosuccinate synthase KM401_23260 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_23260 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_23265 PF12787 EcsC protein family KM401_23280 PF00871 Acetokinase family KM401_23285 PF02384 N-6 DNA Methylase KM401_23290 PF08534 Redoxin KM401_23295 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KM401_23305 PF01513 ATP-NAD kinase KM401_23310 PF07969 Amidohydrolase family KM401_23320 PF00501 AMP-binding enzyme KM401_23320 PF13193 AMP-binding enzyme C-terminal domain KM401_23325 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM401_23330 PF02568 Thiamine biosynthesis protein (ThiI) KM401_23330 PF02926 THUMP domain KM401_23335 PF00266 Aminotransferase class-V KM401_23340 PF06160 Septation ring formation regulator, EzrA KM401_23345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_23345 PF03466 LysR substrate binding domain KM401_23350 PF00892 EamA-like transporter family KM401_23360 PF13185 GAF domain KM401_23365 PF01053 Cys/Met metabolism PLP-dependent enzyme KM401_23370 PF00163 Ribosomal protein S4/S9 N-terminal domain KM401_23370 PF01479 S4 domain KM401_23385 PF00579 tRNA synthetases class I (W and Y) KM401_23385 PF01479 S4 domain KM401_23395 PF04542 Sigma-70 region 2 KM401_23395 PF08281 Sigma-70, region 4 KM401_23405 PF00501 AMP-binding enzyme KM401_23405 PF13193 AMP-binding enzyme C-terminal domain KM401_23410 PF00583 Acetyltransferase (GNAT) family KM401_23415 PF00571 CBS domain KM401_23420 PF00850 Histone deacetylase domain KM401_23430 PF00072 Response regulator receiver domain KM401_23430 PF00486 Transcriptional regulatory protein, C terminal KM401_23435 PF00672 HAMP domain KM401_23435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_23435 PF00512 His Kinase A (phospho-acceptor) domain KM401_23435 PF13426 PAS domain KM401_23440 PF12796 Ankyrin repeats (3 copies) KM401_23445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM401_23450 PF01741 Large-conductance mechanosensitive channel, MscL KM401_23475 PF00356 Bacterial regulatory proteins, lacI family KM401_23480 PF07537 CamS sex pheromone cAM373 precursor KM401_23485 PF11009 Protein of unknown function (DUF2847) KM401_23495 PF02073 Thermophilic metalloprotease (M29) KM401_23515 PF13302 Acetyltransferase (GNAT) domain KM401_23520 PF01225 Mur ligase family, catalytic domain KM401_23520 PF02875 Mur ligase family, glutamate ligase domain KM401_23520 PF08245 Mur ligase middle domain KM401_23530 PF17854 FtsK alpha domain KM401_23530 PF01580 FtsK/SpoIIIE family KM401_23530 PF09397 Ftsk gamma domain KM401_23540 PF14794 Domain of unknown function (DUF4479) KM401_23540 PF01588 Putative tRNA binding domain KM401_23545 PF07285 Protein of unknown function (DUF1444) KM401_23550 PF00085 Thioredoxin KM401_23555 PF01931 Protein of unknown function DUF84 KM401_23560 PF05343 M42 glutamyl aminopeptidase KM401_23570 PF00753 Metallo-beta-lactamase superfamily KM401_23575 PF02390 Putative methyltransferase KM401_23580 PF14165 YtzH-like protein KM401_23585 PF01636 Phosphotransferase enzyme family KM401_23590 PF00128 Alpha amylase, catalytic domain KM401_23590 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KM401_23590 PF17999 Pullulanase N1-terminal domain KM401_23595 PF02834 LigT like Phosphoesterase KM401_23605 PF08220 DeoR-like helix-turn-helix domain KM401_23610 PF01479 S4 domain KM401_23610 PF00849 RNA pseudouridylate synthase KM401_23615 PF14667 Polysaccharide biosynthesis C-terminal domain KM401_23615 PF01943 Polysaccharide biosynthesis protein KM401_23625 PF07690 Major Facilitator Superfamily KM401_23630 PF01022 Bacterial regulatory protein, arsR family KM401_23635 PF08327 Activator of Hsp90 ATPase homolog 1-like protein KM401_23645 PF10957 Sporulation protein Cse60 KM401_23655 PF02559 CarD-like/TRCF domain KM401_23665 PF06800 Sugar transport protein KM401_23680 PF02391 MoaE protein KM401_23685 PF03205 Molybdopterin guanine dinucleotide synthesis protein B KM401_23690 PF00994 Probable molybdopterin binding domain KM401_23690 PF03453 MoeA N-terminal region (domain I and II) KM401_23690 PF03454 MoeA C-terminal region (domain IV) KM401_23695 PF01967 MoaC family KM401_23700 PF00899 ThiF family KM401_23725 PF00581 Rhodanese-like domain KM401_23735 PF00561 alpha/beta hydrolase fold KM401_23740 PF03323 Bacillus/Clostridium GerA spore germination protein KM401_23745 PF03845 Spore germination protein KM401_23775 PF13603 Leucyl-tRNA synthetase, Domain 2 KM401_23775 PF09334 tRNA synthetases class I (M) KM401_23775 PF08264 Anticodon-binding domain of tRNA KM401_23775 PF00133 tRNA synthetases class I (I, L, M and V) KM401_23780 PF07690 Major Facilitator Superfamily KM401_23785 PF00999 Sodium/hydrogen exchanger family KM401_23790 PF02080 TrkA-C domain KM401_23795 PF00589 Phage integrase family KM401_23805 PF00005 ABC transporter KM401_23810 PF07786 Protein of unknown function (DUF1624) KM401_23810 PF04235 Protein of unknown function (DUF418) KM401_23820 PF10732 Protein of unknown function (DUF2524) KM401_23825 PF16199 Radical_SAM C-terminal domain KM401_23825 PF04055 Radical SAM superfamily KM401_23830 PF06962 Putative rRNA methylase KM401_23835 PF13732 Domain of unknown function (DUF4162) KM401_23835 PF00005 ABC transporter KM401_23845 PF01177 Asp/Glu/Hydantoin racemase KM401_23860 PF10776 Protein of unknown function (DUF2600) KM401_23865 PF12146 Serine aminopeptidase, S33 KM401_23870 PF00132 Bacterial transferase hexapeptide (six repeats) KM401_23875 PF01569 PAP2 superfamily KM401_23880 PF13439 Glycosyltransferase Family 4 KM401_23880 PF00534 Glycosyl transferases group 1 KM401_23885 PF12804 MobA-like NTP transferase domain KM401_23890 PF00994 Probable molybdopterin binding domain KM401_23905 PF02773 S-adenosylmethionine synthetase, C-terminal domain KM401_23905 PF00438 S-adenosylmethionine synthetase, N-terminal domain KM401_23905 PF02772 S-adenosylmethionine synthetase, central domain KM401_23910 PF01293 Phosphoenolpyruvate carboxykinase KM401_23945 PF01784 NIF3 (NGG1p interacting factor 3) KM401_23950 PF00512 His Kinase A (phospho-acceptor) domain KM401_23950 PF13188 PAS domain KM401_23950 PF13426 PAS domain KM401_23950 PF00989 PAS fold KM401_23950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_23955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_23955 PF00512 His Kinase A (phospho-acceptor) domain KM401_23955 PF00989 PAS fold KM401_23955 PF08447 PAS fold KM401_23960 PF00561 alpha/beta hydrolase fold KM401_23960 PF08386 TAP-like protein KM401_23985 PF00005 ABC transporter KM401_23990 PF00528 Binding-protein-dependent transport system inner membrane component KM401_24015 PF00293 NUDIX domain KM401_24035 PF02664 S-Ribosylhomocysteinase (LuxS) KM401_24040 PF01809 Putative membrane protein insertion efficiency factor KM401_24045 PF00484 Carbonic anhydrase KM401_24050 PF01654 Cytochrome bd terminal oxidase subunit I KM401_24055 PF02322 Cytochrome bd terminal oxidase subunit II KM401_24060 PF10676 Spore germination protein gerPA/gerPF KM401_24075 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_24075 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_24100 PF04012 PspA/IM30 family KM401_24115 PF07664 Ferrous iron transport protein B C terminus KM401_24115 PF17910 FeoB cytosolic helical domain KM401_24115 PF02421 Ferrous iron transport protein B KM401_24115 PF07670 Nucleoside recognition KM401_24125 PF09515 Thiamine transporter protein (Thia_YuaJ) KM401_24130 PF00512 His Kinase A (phospho-acceptor) domain KM401_24130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_24130 PF00672 HAMP domain KM401_24135 PF00072 Response regulator receiver domain KM401_24135 PF00486 Transcriptional regulatory protein, C terminal KM401_24160 PF00156 Phosphoribosyl transferase domain KM401_24165 PF00781 Diacylglycerol kinase catalytic domain KM401_24185 PF00248 Aldo/keto reductase family KM401_24200 PF09335 SNARE associated Golgi protein KM401_24205 PF00398 Ribosomal RNA adenine dimethylase KM401_24210 PF02687 FtsX-like permease family KM401_24215 PF00005 ABC transporter KM401_24220 PF12833 Helix-turn-helix domain KM401_24220 PF06445 GyrI-like small molecule binding domain KM401_24225 PF00486 Transcriptional regulatory protein, C terminal KM401_24225 PF00072 Response regulator receiver domain KM401_24230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_24235 PF02687 FtsX-like permease family KM401_24245 PF02687 FtsX-like permease family KM401_24250 PF00005 ABC transporter KM401_24265 PF02447 GntP family permease KM401_24270 PF07702 UTRA domain KM401_24270 PF00392 Bacterial regulatory proteins, gntR family KM401_24280 PF07071 KDGP aldolase KM401_24285 PF03841 L-seryl-tRNA selenium transferase KM401_24290 PF01979 Amidohydrolase family KM401_24305 PF02557 D-alanyl-D-alanine carboxypeptidase KM401_24310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_24310 PF00512 His Kinase A (phospho-acceptor) domain KM401_24315 PF00072 Response regulator receiver domain KM401_24315 PF00486 Transcriptional regulatory protein, C terminal KM401_24320 PF13378 Enolase C-terminal domain-like KM401_24320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KM401_24325 PF00501 AMP-binding enzyme KM401_24325 PF13193 AMP-binding enzyme C-terminal domain KM401_24330 PF00378 Enoyl-CoA hydratase/isomerase KM401_24335 PF00561 alpha/beta hydrolase fold KM401_24340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM401_24340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM401_24340 PF16582 Middle domain of thiamine pyrophosphate KM401_24345 PF00425 chorismate binding enzyme KM401_24350 PF01040 UbiA prenyltransferase family KM401_24355 PF01258 Prokaryotic dksA/traR C4-type zinc finger KM401_24360 PF00313 'Cold-shock' DNA-binding domain KM401_24375 PF00343 Carbohydrate phosphorylase KM401_24380 PF08323 Starch synthase catalytic domain KM401_24380 PF00534 Glycosyl transferases group 1 KM401_24385 PF00483 Nucleotidyl transferase KM401_24390 PF00483 Nucleotidyl transferase KM401_24395 PF02806 Alpha amylase, C-terminal all-beta domain KM401_24395 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KM401_24395 PF00128 Alpha amylase, catalytic domain KM401_24410 PF00056 lactate/malate dehydrogenase, NAD binding domain KM401_24410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM401_24505 PF05698 Bacterial trigger factor protein (TF) C-terminus KM401_24505 PF05697 Bacterial trigger factor protein (TF) KM401_24540 PF02308 MgtC family KM401_24545 PF07885 Ion channel KM401_24545 PF02254 TrkA-N domain KM401_24550 PF08868 YugN-like family KM401_24555 PF00342 Phosphoglucose isomerase KM401_24560 PF04070 Domain of unknown function (DUF378) KM401_24565 PF00575 S1 RNA binding domain KM401_24570 PF00155 Aminotransferase class I and II KM401_24575 PF01037 Lrp/AsnC ligand binding domain KM401_24580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KM401_24580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KM401_24585 PF00561 alpha/beta hydrolase fold KM401_24585 PF08386 TAP-like protein KM401_24595 PF00155 Aminotransferase class I and II KM401_24610 PF08810 Kinase associated protein B KM401_24615 PF00929 Exonuclease KM401_24620 PF03600 Citrate transporter KM401_24635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM401_24635 PF03129 Anticodon binding domain KM401_24640 PF03061 Thioesterase superfamily KM401_24650 PF02632 BioY family KM401_24660 PF00483 Nucleotidyl transferase KM401_24665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KM401_24665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KM401_24665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KM401_24665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KM401_24670 PF02457 DisA bacterial checkpoint controller nucleotide-binding KM401_24670 PF10372 Bacterial membrane-spanning protein N-terminus KM401_24675 PF00883 Cytosol aminopeptidase family, catalytic domain KM401_24675 PF02789 Cytosol aminopeptidase family, N-terminal domain KM401_24680 PF06725 3D domain KM401_24690 PF00293 NUDIX domain KM401_24690 PF13344 Haloacid dehalogenase-like hydrolase KM401_24695 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_24700 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_24710 PF06445 GyrI-like small molecule binding domain KM401_24725 PF04463 Protein of unknown function (DUF523) KM401_24745 PF01521 Iron-sulphur cluster biosynthesis KM401_24750 PF01678 Diaminopimelate epimerase KM401_24755 PF07293 Protein of unknown function (DUF1450) KM401_24760 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_24770 PF00005 ABC transporter KM401_24770 PF09383 NIL domain KM401_24775 PF03649 Uncharacterised protein family (UPF0014) KM401_24780 PF03831 PhnA domain KM401_24780 PF08274 PhnA Zinc-Ribbon KM401_24815 PF13427 Domain of unknown function (DUF4111) KM401_24815 PF01909 Nucleotidyltransferase domain KM401_24820 PF07315 Protein of unknown function (DUF1462) KM401_24825 PF01106 NifU-like domain KM401_24840 PF04608 Phosphatidylglycerophosphatase A KM401_24850 PF02525 Flavodoxin-like fold KM401_24855 PF13344 Haloacid dehalogenase-like hydrolase KM401_24865 PF01934 Protein of unknown function DUF86 KM401_24870 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KM401_24885 PF06265 Protein of unknown function (DUF1027) KM401_24890 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KM401_24895 PF13411 MerR HTH family regulatory protein KM401_24895 PF07739 TipAS antibiotic-recognition domain KM401_24900 PF10086 YhfC intramembrane metalloprotease KM401_24920 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KM401_24920 PF04055 Radical SAM superfamily KM401_24925 PF01551 Peptidase family M23 KM401_24935 PF08827 Domain of unknown function (DUF1805) KM401_24940 PF02872 5'-nucleotidase, C-terminal domain KM401_24945 PF03551 Transcriptional regulator PadR-like family KM401_24950 PF04892 VanZ like family KM401_24955 PF01458 Uncharacterized protein family (UPF0051) KM401_24960 PF01592 NifU-like N terminal domain KM401_24965 PF00266 Aminotransferase class-V KM401_24970 PF01458 Uncharacterized protein family (UPF0051) KM401_24975 PF00005 ABC transporter KM401_24980 PF03180 NLPA lipoprotein KM401_24985 PF03180 NLPA lipoprotein KM401_24990 PF00528 Binding-protein-dependent transport system inner membrane component KM401_24995 PF09383 NIL domain KM401_24995 PF00005 ABC transporter KM401_25005 PF00085 Thioredoxin KM401_25010 PF01751 Toprim domain KM401_25015 PF01597 Glycine cleavage H-protein KM401_25020 PF03960 ArsC family KM401_25065 PF00056 lactate/malate dehydrogenase, NAD binding domain KM401_25065 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM401_25085 PF00440 Bacterial regulatory proteins, tetR family KM401_25085 PF13305 Tetracyclin repressor-like, C-terminal domain KM401_25090 PF00753 Metallo-beta-lactamase superfamily KM401_25095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM401_25095 PF02770 Acyl-CoA dehydrogenase, middle domain KM401_25095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM401_25100 PF02803 Thiolase, C-terminal domain KM401_25100 PF00108 Thiolase, N-terminal domain KM401_25105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KM401_25105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KM401_25105 PF00378 Enoyl-CoA hydratase/isomerase KM401_25110 PF14115 YuzL-like protein KM401_25115 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_25115 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_25120 PF01619 Proline dehydrogenase KM401_25125 PF10835 Protein of unknown function (DUF2573) KM401_25130 PF01910 Thiamine-binding protein KM401_25135 PF02743 Cache domain KM401_25135 PF00672 HAMP domain KM401_25135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_25155 PF07690 Major Facilitator Superfamily KM401_25160 PF13520 Amino acid permease KM401_25170 PF02096 60Kd inner membrane protein KM401_25180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM401_25180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM401_25215 PF09335 SNARE associated Golgi protein KM401_25225 PF17969 L,D-transpeptidase C-terminal domain KM401_25225 PF03734 L,D-transpeptidase catalytic domain KM401_25230 PF00072 Response regulator receiver domain KM401_25230 PF00486 Transcriptional regulatory protein, C terminal KM401_25235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_25235 PF00512 His Kinase A (phospho-acceptor) domain KM401_25235 PF00989 PAS fold KM401_25235 PF16736 Single Cache-like KM401_25245 PF08264 Anticodon-binding domain of tRNA KM401_25245 PF09334 tRNA synthetases class I (M) KM401_25255 PF02743 Cache domain KM401_25255 PF00672 HAMP domain KM401_25255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_25260 PF01883 Iron-sulfur cluster assembly protein KM401_25265 PF07504 Fungalysin/Thermolysin Propeptide Motif KM401_25265 PF03413 Peptidase propeptide and YPEB domain KM401_25265 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM401_25265 PF01447 Thermolysin metallopeptidase, catalytic domain KM401_25270 PF02678 Pirin KM401_25270 PF17954 Quercetinase C-terminal cupin domain KM401_25275 PF01047 MarR family KM401_25285 PF00999 Sodium/hydrogen exchanger family KM401_25290 PF02080 TrkA-C domain KM401_25295 PF01235 Sodium:alanine symporter family KM401_25300 PF00210 Ferritin-like domain KM401_25315 PF03641 Possible lysine decarboxylase KM401_25325 PF00210 Ferritin-like domain KM401_25335 PF07662 Na+ dependent nucleoside transporter C-terminus KM401_25335 PF01773 Na+ dependent nucleoside transporter N-terminus KM401_25340 PF07662 Na+ dependent nucleoside transporter C-terminus KM401_25340 PF01773 Na+ dependent nucleoside transporter N-terminus KM401_25345 PF01235 Sodium:alanine symporter family KM401_25350 PF01235 Sodium:alanine symporter family KM401_25355 PF13460 NAD(P)H-binding KM401_25370 PF00248 Aldo/keto reductase family KM401_25375 PF07690 Major Facilitator Superfamily KM401_25380 PF01638 HxlR-like helix-turn-helix KM401_25385 PF07849 Protein of unknown function (DUF1641) KM401_25390 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_25395 PF00579 tRNA synthetases class I (W and Y) KM401_25395 PF01479 S4 domain KM401_25400 PF01565 FAD binding domain KM401_25400 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KM401_25410 PF00672 HAMP domain KM401_25410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_25410 PF17202 Single cache domain 3 KM401_25420 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KM401_25425 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KM401_25440 PF13302 Acetyltransferase (GNAT) domain KM401_25445 PF06146 Phosphate-starvation-inducible E KM401_25460 PF00005 ABC transporter KM401_25465 PF01032 FecCD transport family KM401_25470 PF01032 FecCD transport family KM401_25480 PF00072 Response regulator receiver domain KM401_25480 PF00486 Transcriptional regulatory protein, C terminal KM401_25490 PF01668 SmpB protein KM401_25495 PF08206 Ribonuclease B OB domain KM401_25495 PF00773 RNB domain KM401_25495 PF00575 S1 RNA binding domain KM401_25495 PF17876 Cold shock domain KM401_25500 PF12146 Serine aminopeptidase, S33 KM401_25505 PF03840 Preprotein translocase SecG subunit KM401_25510 PF04172 LrgB-like family KM401_25515 PF03788 LrgA family KM401_25520 PF01156 Inosine-uridine preferring nucleoside hydrolase KM401_25615 PF04860 Phage portal protein KM401_25640 PF02899 Phage integrase, N-terminal SAM-like domain KM401_25640 PF00589 Phage integrase family KM401_25645 PF00113 Enolase, C-terminal TIM barrel domain KM401_25645 PF03952 Enolase, N-terminal domain KM401_25650 PF01676 Metalloenzyme superfamily KM401_25650 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KM401_25655 PF00121 Triosephosphate isomerase KM401_25660 PF00162 Phosphoglycerate kinase KM401_25665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KM401_25665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KM401_25670 PF04198 Putative sugar-binding domain KM401_25680 PF00309 Sigma-54 factor, Activator interacting domain (AID) KM401_25680 PF04963 Sigma-54 factor, core binding domain KM401_25680 PF04552 Sigma-54, DNA binding domain KM401_25700 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM401_25705 PF07451 Stage V sporulation protein AD (SpoVAD) KM401_25710 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM401_25720 PF04239 Protein of unknown function (DUF421) KM401_25725 PF00574 Clp protease KM401_25730 PF00381 PTS HPr component phosphorylation site KM401_25735 PF02650 WhiA C-terminal HTH domain KM401_25735 PF14527 WhiA LAGLIDADG-like domain KM401_25735 PF10298 WhiA N-terminal LAGLIDADG-like domain KM401_25740 PF01933 Uncharacterised protein family UPF0052 KM401_25745 PF03668 P-loop ATPase protein family KM401_25750 PF00293 NUDIX domain KM401_25760 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM401_25770 PF14602 Hexapeptide repeat of succinyl-transferase KM401_25775 PF13419 Haloacid dehalogenase-like hydrolase KM401_25780 PF01790 Prolipoprotein diacylglyceryl transferase KM401_25785 PF07475 HPr Serine kinase C-terminal domain KM401_25785 PF02603 HPr Serine kinase N terminus KM401_25790 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV KM401_25800 PF17755 UvrA DNA-binding domain KM401_25800 PF17760 UvrA interaction domain KM401_25800 PF00005 ABC transporter KM401_25805 PF00271 Helicase conserved C-terminal domain KM401_25805 PF02151 UvrB/uvrC motif KM401_25805 PF12344 Ultra-violet resistance protein B KM401_25805 PF17757 UvrB interaction domain KM401_25805 PF04851 Type III restriction enzyme, res subunit KM401_25810 PF07282 Putative transposase DNA-binding domain KM401_25810 PF12323 Helix-turn-helix domain KM401_25810 PF01385 Probable transposase KM401_25825 PF07739 TipAS antibiotic-recognition domain KM401_25825 PF13411 MerR HTH family regulatory protein KM401_25850 PF03601 Conserved hypothetical protein 698 KM401_25855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_25855 PF03466 LysR substrate binding domain KM401_25860 PF13411 MerR HTH family regulatory protein KM401_25865 PF03358 NADPH-dependent FMN reductase KM401_25870 PF00005 ABC transporter KM401_25870 PF12848 ABC transporter KM401_25880 PF00664 ABC transporter transmembrane region KM401_25880 PF00005 ABC transporter KM401_25885 PF17820 PDZ domain KM401_25890 PF17820 PDZ domain KM401_25890 PF03572 Peptidase family S41 KM401_25890 PF01471 Putative peptidoglycan binding domain KM401_25895 PF02687 FtsX-like permease family KM401_25895 PF18075 FtsX extracellular domain KM401_25900 PF00005 ABC transporter KM401_25905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KM401_25915 PF01043 SecA preprotein cross-linking domain KM401_25915 PF07516 SecA Wing and Scaffold domain KM401_25915 PF02810 SEC-C motif KM401_25915 PF07517 SecA DEAD-like domain KM401_25920 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KM401_25920 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KM401_25925 PF00313 'Cold-shock' DNA-binding domain KM401_25935 PF00271 Helicase conserved C-terminal domain KM401_25935 PF04851 Type III restriction enzyme, res subunit KM401_25940 PF00877 NlpC/P60 family KM401_25940 PF01476 LysM domain KM401_25945 PF01638 HxlR-like helix-turn-helix KM401_25950 PF02645 Uncharacterised protein, DegV family COG1307 KM401_25955 PF01205 Uncharacterized protein family UPF0029 KM401_25955 PF09186 Domain of unknown function (DUF1949) KM401_25960 PF03816 Cell envelope-related transcriptional attenuator domain KM401_25965 PF02350 UDP-N-acetylglucosamine 2-epimerase KM401_25970 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM401_25970 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM401_25970 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM401_25975 PF00953 Glycosyl transferase family 4 KM401_25980 PF01522 Polysaccharide deacetylase KM401_25985 PF00158 Sigma-54 interaction domain KM401_25985 PF03610 PTS system fructose IIA component KM401_25985 PF00874 PRD domain KM401_25995 PF02417 Chromate transporter KM401_26000 PF04794 YdjC-like protein KM401_26005 PF02056 Family 4 glycosyl hydrolase KM401_26005 PF11975 Family 4 glycosyl hydrolase C-terminal domain KM401_26010 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KM401_26015 PF02378 Phosphotransferase system, EIIC KM401_26020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM401_26030 PF02675 S-adenosylmethionine decarboxylase KM401_26035 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KM401_26040 PF02378 Phosphotransferase system, EIIC KM401_26045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM401_26050 PF00375 Sodium:dicarboxylate symporter family KM401_26060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM401_26070 PF03466 LysR substrate binding domain KM401_26070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM401_26090 PF01654 Cytochrome bd terminal oxidase subunit I KM401_26095 PF02322 Cytochrome bd terminal oxidase subunit II KM401_26100 PF02040 Arsenical pump membrane protein KM401_26105 PF01964 Radical SAM ThiC family KM401_26105 PF13667 ThiC-associated domain KM401_26120 PF09988 Uncharacterized metal-binding protein (DUF2227) KM401_26130 PF00884 Sulfatase KM401_26135 PF01063 Amino-transferase class IV KM401_26145 PF07662 Na+ dependent nucleoside transporter C-terminus KM401_26145 PF01773 Na+ dependent nucleoside transporter N-terminus KM401_26160 PF02028 BCCT, betaine/carnitine/choline family transporter KM401_26165 PF01476 LysM domain KM401_26165 PF06725 3D domain KM401_26190 PF04434 SWIM zinc finger KM401_26195 PF00271 Helicase conserved C-terminal domain KM401_26195 PF00176 SNF2 family N-terminal domain KM401_26195 PF12419 SNF2 Helicase protein KM401_26230 PF04893 Yip1 domain KM401_26235 PF02687 FtsX-like permease family KM401_26235 PF12704 MacB-like periplasmic core domain KM401_26240 PF00005 ABC transporter KM401_26260 PF07690 Major Facilitator Superfamily KM401_26275 PF16736 Single Cache-like KM401_26275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_26275 PF00512 His Kinase A (phospho-acceptor) domain KM401_26275 PF00989 PAS fold KM401_26280 PF00486 Transcriptional regulatory protein, C terminal KM401_26280 PF00072 Response regulator receiver domain KM401_26285 PF16363 GDP-mannose 4,6 dehydratase KM401_26290 PF03816 Cell envelope-related transcriptional attenuator domain KM401_26295 PF07977 FabA-like domain KM401_26300 PF02350 UDP-N-acetylglucosamine 2-epimerase KM401_26305 PF00005 ABC transporter KM401_26305 PF08239 Bacterial SH3 domain KM401_26310 PF01061 ABC-2 type transporter KM401_26315 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM401_26315 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM401_26315 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM401_26360 PF12116 Stage III sporulation protein D KM401_26375 PF01551 Peptidase family M23 KM401_26385 PF00005 ABC transporter KM401_26395 PF08486 Stage II sporulation protein KM401_26400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KM401_26410 PF06612 Protein of unknown function (DUF1146) KM401_26415 PF00361 Proton-conducting membrane transporter KM401_26420 PF00361 Proton-conducting membrane transporter KM401_26425 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus KM401_26425 PF00361 Proton-conducting membrane transporter KM401_26425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KM401_26430 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KM401_26435 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KM401_26445 PF00146 NADH dehydrogenase KM401_26450 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KM401_26455 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KM401_26460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KM401_26465 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KM401_26470 PF00563 EAL domain KM401_26470 PF00990 Diguanylate cyclase, GGDEF domain KM401_26470 PF03707 Bacterial signalling protein N terminal repeat KM401_26485 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KM401_26485 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KM401_26490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM401_26490 PF02874 ATP synthase alpha/beta family, beta-barrel domain KM401_26495 PF00231 ATP synthase KM401_26500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM401_26500 PF00306 ATP synthase alpha/beta chain, C terminal domain KM401_26500 PF02874 ATP synthase alpha/beta family, beta-barrel domain KM401_26505 PF00213 ATP synthase delta (OSCP) subunit KM401_26510 PF00430 ATP synthase B/B' CF(0) KM401_26515 PF00137 ATP synthase subunit C KM401_26520 PF00119 ATP synthase A chain KM401_26525 PF03899 ATP synthase I chain KM401_26545 PF00464 Serine hydroxymethyltransferase KM401_26550 PF04260 Protein of unknown function (DUF436) KM401_26555 PF02502 Ribose/Galactose Isomerase KM401_26560 PF01451 Low molecular weight phosphotyrosine protein phosphatase KM401_26565 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KM401_26570 PF07681 DoxX KM401_26575 PF01613 Flavin reductase like domain KM401_26585 PF02659 Putative manganese efflux pump KM401_26590 PF01300 Telomere recombination KM401_26590 PF03481 Putative GTP-binding controlling metal-binding KM401_26600 PF09551 Stage II sporulation protein R (spore_II_R) KM401_26605 PF13847 Methyltransferase domain KM401_26605 PF17827 PrmC N-terminal domain KM401_26610 PF03462 PCRF domain KM401_26610 PF00472 RF-1 domain KM401_26615 PF00265 Thymidine kinase KM401_26620 PF01197 Ribosomal protein L31 KM401_26625 PF07498 Rho termination factor, N-terminal domain KM401_26625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM401_26625 PF07497 Rho termination factor, RNA-binding domain KM401_26630 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KM401_26635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KM401_26640 PF01116 Fructose-bisphosphate aldolase class-II KM401_26645 PF00072 Response regulator receiver domain KM401_26650 PF10740 Domain of unknown function (DUF2529) KM401_26655 PF00117 Glutamine amidotransferase class-I KM401_26655 PF06418 CTP synthase N-terminus KM401_26660 PF05066 HB1, ASXL, restriction endonuclease HTH domain KM401_26670 PF02770 Acyl-CoA dehydrogenase, middle domain KM401_26670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM401_26670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM401_26675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM401_26675 PF02770 Acyl-CoA dehydrogenase, middle domain KM401_26675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM401_26680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KM401_26680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KM401_26685 PF02803 Thiolase, C-terminal domain KM401_26685 PF00108 Thiolase, N-terminal domain KM401_26690 PF13183 4Fe-4S dicluster domain KM401_26690 PF02754 Cysteine-rich domain KM401_26695 PF13091 PLD-like domain KM401_26700 PF03851 UV-endonuclease UvdE KM401_26705 PF00563 EAL domain KM401_26705 PF00990 Diguanylate cyclase, GGDEF domain KM401_26705 PF03707 Bacterial signalling protein N terminal repeat KM401_26725 PF00196 Bacterial regulatory proteins, luxR family KM401_26725 PF00072 Response regulator receiver domain KM401_26730 PF07730 Histidine kinase KM401_26730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_26740 PF00005 ABC transporter KM401_26745 PF00557 Metallopeptidase family M24 KM401_26755 PF02225 PA domain KM401_26755 PF04389 Peptidase family M28 KM401_26775 PF04542 Sigma-70 region 2 KM401_26775 PF08281 Sigma-70, region 4 KM401_26780 PF00750 tRNA synthetases class I (R) KM401_26780 PF05746 DALR anticodon binding domain KM401_26780 PF03485 Arginyl tRNA synthetase N terminal domain KM401_26785 PF09148 Domain of unknown function (DUF1934) KM401_26790 PF17676 LD-carboxypeptidase C-terminal domain KM401_26790 PF02016 LD-carboxypeptidase N-terminal domain KM401_26805 PF00491 Arginase family KM401_26810 PF17284 Spermidine synthase tetramerisation domain KM401_26815 PF07690 Major Facilitator Superfamily KM401_26820 PF13411 MerR HTH family regulatory protein KM401_26825 PF03009 Glycerophosphoryl diester phosphodiesterase family KM401_26830 PF00912 Transglycosylase KM401_26830 PF00905 Penicillin binding protein transpeptidase domain KM401_26835 PF08741 YwhD family KM401_26840 PF02163 Peptidase family M50 KM401_26845 PF01361 Tautomerase enzyme KM401_26850 PF01966 HD domain KM401_26855 PF01497 Periplasmic binding protein KM401_26860 PF00005 ABC transporter KM401_26865 PF01032 FecCD transport family KM401_26875 PF07293 Protein of unknown function (DUF1450) KM401_26890 PF03099 Biotin/lipoate A/B protein ligase family KM401_26895 PF01515 Phosphate acetyl/butaryl transferase KM401_26900 PF06778 Chlorite dismutase KM401_26905 PF07943 Penicillin-binding protein 5, C-terminal domain KM401_26905 PF00768 D-alanyl-D-alanine carboxypeptidase KM401_26910 PF07486 Cell Wall Hydrolase KM401_26915 PF09671 Spore coat protein (Spore_GerQ) KM401_26920 PF04241 Protein of unknown function (DUF423) KM401_26930 PF07885 Ion channel KM401_26930 PF02254 TrkA-N domain KM401_26935 PF00860 Permease family KM401_26945 PF12823 Domain of unknown function (DUF3817) KM401_26950 PF03167 Uracil DNA glycosylase superfamily KM401_26955 PF12679 ABC-2 family transporter protein KM401_26960 PF00005 ABC transporter KM401_26965 PF13472 GDSL-like Lipase/Acylhydrolase family KM401_26970 PF00356 Bacterial regulatory proteins, lacI family KM401_26970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM401_26980 PF01842 ACT domain KM401_26980 PF00742 Homoserine dehydrogenase KM401_26980 PF03447 Homoserine dehydrogenase, NAD binding domain KM401_26985 PF04204 Homoserine O-succinyltransferase KM401_26990 PF01053 Cys/Met metabolism PLP-dependent enzyme KM401_27000 PF13419 Haloacid dehalogenase-like hydrolase KM401_27005 PF00027 Cyclic nucleotide-binding domain KM401_27010 PF02525 Flavodoxin-like fold KM401_27015 PF00196 Bacterial regulatory proteins, luxR family KM401_27015 PF00072 Response regulator receiver domain KM401_27025 PF08543 Phosphomethylpyrimidine kinase KM401_27030 PF07694 5TMR of 5TMR-LYT KM401_27030 PF00990 Diguanylate cyclase, GGDEF domain KM401_27035 PF04328 Selenoprotein, putative KM401_27040 PF02554 Carbon starvation protein CstA KM401_27040 PF13722 5TM C-terminal transporter carbon starvation CstA KM401_27045 PF04397 LytTr DNA-binding domain KM401_27045 PF00072 Response regulator receiver domain KM401_27050 PF07690 Major Facilitator Superfamily KM401_27055 PF03808 Glycosyl transferase WecB/TagA/CpsF family KM401_27070 PF03458 UPF0126 domain KM401_27075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM401_27085 PF03061 Thioesterase superfamily KM401_27095 PF00535 Glycosyl transferase family 2 KM401_27100 PF12848 ABC transporter KM401_27100 PF00005 ABC transporter KM401_27120 PF00535 Glycosyl transferase family 2 KM401_27125 PF00440 Bacterial regulatory proteins, tetR family KM401_27130 PF00873 AcrB/AcrD/AcrF family KM401_27135 PF01625 Peptide methionine sulfoxide reductase KM401_27135 PF01641 SelR domain KM401_27140 PF01594 AI-2E family transporter KM401_27145 PF04172 LrgB-like family KM401_27150 PF03788 LrgA family KM401_27155 PF00072 Response regulator receiver domain KM401_27155 PF04397 LytTr DNA-binding domain KM401_27160 PF13492 GAF domain KM401_27160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_27160 PF06580 Histidine kinase KM401_27160 PF07694 5TMR of 5TMR-LYT KM401_27165 PF07690 Major Facilitator Superfamily KM401_27170 PF02028 BCCT, betaine/carnitine/choline family transporter KM401_27175 PF02898 Nitric oxide synthase, oxygenase domain KM401_27180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KM401_27180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KM401_27190 PF02293 AmiS/UreI family transporter KM401_27200 PF16363 GDP-mannose 4,6 dehydratase KM401_27205 PF03006 Haemolysin-III related KM401_27215 PF03880 DbpA RNA binding domain KM401_27215 PF00271 Helicase conserved C-terminal domain KM401_27215 PF00270 DEAD/DEAH box helicase KM401_27225 PF00478 IMP dehydrogenase / GMP reductase domain KM401_27230 PF08439 Oligopeptidase F KM401_27230 PF01432 Peptidase family M3 KM401_27240 PF02590 Predicted SPOUT methyltransferase KM401_27250 PF13180 PDZ domain KM401_27255 PF00753 Metallo-beta-lactamase superfamily KM401_27260 PF09648 YycH protein KM401_27265 PF07435 YycH protein KM401_27270 PF00512 His Kinase A (phospho-acceptor) domain KM401_27270 PF00672 HAMP domain KM401_27270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM401_27270 PF13426 PAS domain KM401_27275 PF00486 Transcriptional regulatory protein, C terminal KM401_27275 PF00072 Response regulator receiver domain KM401_27300 PF00709 Adenylosuccinate synthetase KM401_27305 PF00772 DnaB-like helicase N terminal domain KM401_27305 PF03796 DnaB-like helicase C terminal domain KM401_27310 PF03948 Ribosomal protein L9, C-terminal domain KM401_27310 PF01281 Ribosomal protein L9, N-terminal domain KM401_27315 PF01368 DHH family KM401_27315 PF02272 DHHA1 domain KM401_27320 PF09991 Predicted membrane protein (DUF2232) KM401_27325 PF01084 Ribosomal protein S18 KM401_27330 PF00436 Single-strand binding protein family KM401_27335 PF01250 Ribosomal protein S6 KM401_27340 PF06071 Protein of unknown function (DUF933) KM401_27340 PF01926 50S ribosome-binding GTPase KM401_27345 PF06107 Bacterial protein of unknown function (DUF951) KM401_27350 PF00924 Mechanosensitive ion channel KM401_27355 PF06866 Protein of unknown function (DUF1256) KM401_27360 PF17762 HTH domain found in ParB protein KM401_27360 PF02195 ParB-like nuclease domain KM401_27365 PF13614 AAA domain KM401_27370 PF17762 HTH domain found in ParB protein KM401_27370 PF02195 ParB-like nuclease domain KM401_27375 PF02527 rRNA small subunit methyltransferase G KM401_27380 PF13932 GidA associated domain KM401_27380 PF01134 Glucose inhibited division protein A KM401_27385 PF01926 50S ribosome-binding GTPase KM401_27385 PF12631 MnmE helical domain KM401_27385 PF10396 GTP-binding protein TrmE N-terminus KM401_27390 PF14804 Jag N-terminus KM401_27390 PF01424 R3H domain KM401_27395 PF02096 60Kd inner membrane protein KM401_27400 PF00825 Ribonuclease P KM401_27405 PF00468 Ribosomal protein L34 KM401_27410 PF08708 Primase C terminal 1 (PriCT-1) KM401_27430 PF17362 Family of unknown function KM401_27445 PF17631 Family of unknown function (DUF5512) KM401_27485 PF00437 Type II/IV secretion system protein KM401_27515 PF04956 TrbC/VIRB2 family KM401_27530 PF12696 TraM recognition site of TraD and TraG KM401_27560 PF00877 NlpC/P60 family KM401_27570 PF17632 Family of unknown function (DUF5513) KM401_27595 PF17633 Family of unknown function (DUF5514) KM401_27600 PF17630 Family of unknown function (DUF5511) KM401_27605 PF18840 Large polyvalent protein associated domain 25 KM401_27620 PF13154 Protein of unknown function (DUF3991) KM401_27625 PF01751 Toprim domain KM401_27625 PF01131 DNA topoisomerase KM401_27665 PF17443 Uncharacterized protein pXO2-72 KM401_27685 PF00817 impB/mucB/samB family KM401_27685 PF11799 impB/mucB/samB family C-terminal domain KM401_27685 PF11798 IMS family HHH motif KM401_27690 PF13411 MerR HTH family regulatory protein KM401_27690 PF13152 Protein of unknown function (DUF3967) KM401_27695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM401_27725 PF00874 PRD domain KM401_27725 PF05043 Mga helix-turn-helix domain KM401_27725 PF08280 M protein trans-acting positive regulator (MGA) HTH domain KM401_27730 PF01810 LysE type translocator KM401_27735 PF00874 PRD domain KM401_27735 PF08279 HTH domain KM401_27735 PF05043 Mga helix-turn-helix domain KM401_27740 PF08279 HTH domain KM401_27740 PF00874 PRD domain KM401_27740 PF05043 Mga helix-turn-helix domain KM401_27745 PF09385 Histidine kinase N terminal KM401_27755 PF10502 Signal peptidase, peptidase S26 KM401_27770 PF01022 Bacterial regulatory protein, arsR family KM401_27780 PF08245 Mur ligase middle domain KM401_27785 PF14102 Capsule biosynthesis CapC KM401_27790 PF09587 Bacterial capsule synthesis protein PGA_cap KM401_27810 PF05043 Mga helix-turn-helix domain KM401_27810 PF08280 M protein trans-acting positive regulator (MGA) HTH domain KM401_27820 PF01569 PAP2 superfamily KM401_27830 PF00440 Bacterial regulatory proteins, tetR family KM401_27835 PF04463 Protein of unknown function (DUF523) KM401_27840 PF02517 CPBP intramembrane metalloprotease KM401_27845 PF01906 Putative heavy-metal-binding KM401_27865 PF00395 S-layer homology domain KM401_27865 PF01520 N-acetylmuramoyl-L-alanine amidase KM401_27880 PF13614 AAA domain