DNQ11_00005 SM00382 ATPases associated with a variety of cellular activities DNQ11_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain DNQ11_00010 SM00480 DNA polymerase III beta subunit DNQ11_00025 SM00387 Histidine kinase-like ATPases DNQ11_00025 SM00433 TopoisomeraseII DNQ11_00030 SM00434 DNA Topoisomerase IV DNQ11_00065 SM00116 Domain in cystathionine beta-synthase and other proteins. DNQ11_00065 SM01240 DNQ11_00065 DNQ11_00070 SM00936 Penicillin-binding protein 5, C-terminal domain DNQ11_00130 SM00382 ATPases associated with a variety of cellular activities DNQ11_00140 SM00493 DNQ11_00140 DNQ11_00225 SM00966 SpoVT / AbrB like domain DNQ11_00240 SM00493 DNQ11_00240 DNQ11_00245 SM00650 Ribosomal RNA adenine dimethylases DNQ11_00295 SM01400 DNQ11_00295 DNQ11_00310 SM00487 DEAD-like helicases superfamily DNQ11_00310 SM00490 helicase superfamily c-terminal domain DNQ11_00310 SM00982 DNQ11_00310 DNQ11_00310 SM01058 CarD-like/TRCF domain DNQ11_00315 SM00966 SpoVT / AbrB like domain DNQ11_00330 SM00363 S4 RNA-binding domain DNQ11_00350 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_00365 SM00331 Sigma factor PP2C-like phosphatases DNQ11_00365 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DNQ11_00370 SM00977 TilS substrate C-terminal domain DNQ11_00380 SM00382 ATPases associated with a variety of cellular activities DNQ11_00420 SM00905 Dihydroneopterin aldolase DNQ11_00430 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_00475 SM00382 ATPases associated with a variety of cellular activities DNQ11_00475 SM01086 C-terminal, D2-small domain, of ClpB protein DNQ11_00480 SM00382 ATPases associated with a variety of cellular activities DNQ11_00490 SM00670 Large family of predicted nucleotide-binding domains DNQ11_00515 SM00840 DNQ11_00515 DNQ11_00520 SM00535 Ribonuclease III family DNQ11_00525 SM00967 RNA 2'-O ribose methyltransferase substrate binding DNQ11_00535 SM00421 helix_turn_helix, Lux Regulon DNQ11_00550 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DNQ11_00555 SM00649 Ribosomal protein L11/L12 DNQ11_00585 SM00663 RNA polymerase I subunit A N-terminus DNQ11_00605 SM00838 Elongation factor G C-terminus DNQ11_00605 SM00889 Elongation factor G, domain IV DNQ11_00615 SM01403 DNQ11_00615 DNQ11_00635 SM01382 DNQ11_00635 DNQ11_00635 SM01383 DNQ11_00635 DNQ11_00650 SM00322 K homology RNA-binding domain DNQ11_00670 SM01374 DNQ11_00670 DNQ11_00675 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DNQ11_00735 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_00755 SM00662 RNA polymerases D DNQ11_00765 SM00382 ATPases associated with a variety of cellular activities DNQ11_00770 SM00382 ATPases associated with a variety of cellular activities DNQ11_00800 SM00646 DNQ11_00800 DNQ11_00815 SM01251 DNQ11_00815 DNQ11_00935 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_00935 SM00895 DNQ11_00935 DNQ11_00950 SM01350 DNQ11_00950 DNQ11_01000 SM00382 ATPases associated with a variety of cellular activities DNQ11_01000 SM00930 DNQ11_01000 DNQ11_01010 SM00829 Enoylreductase DNQ11_01060 SM00382 ATPases associated with a variety of cellular activities DNQ11_01065 SM00382 ATPases associated with a variety of cellular activities DNQ11_01080 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_01175 SM00563 Phosphate acyltransferases DNQ11_01190 SM00354 helix_turn _helix lactose operon repressor DNQ11_01245 SM00382 ATPases associated with a variety of cellular activities DNQ11_01275 SM00382 ATPases associated with a variety of cellular activities DNQ11_01280 SM00382 ATPases associated with a variety of cellular activities DNQ11_01355 SM00487 DEAD-like helicases superfamily DNQ11_01355 SM00490 helicase superfamily c-terminal domain DNQ11_01380 SM01005 Alanine racemase, C-terminal domain DNQ11_01395 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_01395 SM00732 Likely ribonuclease with RNase H fold. DNQ11_01405 SM00731 SprT homologues. DNQ11_01510 SM00382 ATPases associated with a variety of cellular activities DNQ11_01515 SM00881 CoA binding domain DNQ11_01530 SM00883 Chaperonin 10 Kd subunit DNQ11_01550 SM00448 cheY-homologous receiver domain DNQ11_01550 SM00862 Transcriptional regulatory protein, C terminal DNQ11_01555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_01555 SM00387 Histidine kinase-like ATPases DNQ11_01555 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_01645 SM00382 ATPases associated with a variety of cellular activities DNQ11_01650 SM00387 Histidine kinase-like ATPases DNQ11_01650 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_01655 SM00448 cheY-homologous receiver domain DNQ11_01655 SM00862 Transcriptional regulatory protein, C terminal DNQ11_01680 SM01001 AIR carboxylase DNQ11_01690 SM00998 Adenylosuccinate lyase C-terminus DNQ11_01705 SM01211 DNQ11_01705 DNQ11_01730 SM00798 AICARFT/IMPCHase bienzyme DNQ11_01730 SM00851 MGS-like domain DNQ11_01735 SM01209 DNQ11_01735 DNQ11_01735 SM01210 DNQ11_01735 DNQ11_01745 SM00244 prohibitin homologues DNQ11_01770 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DNQ11_01770 SM00292 breast cancer carboxy-terminal domain DNQ11_01770 SM00532 Ligase N family DNQ11_01805 SM00382 ATPases associated with a variety of cellular activities DNQ11_01805 SM00930 DNQ11_01805 DNQ11_01835 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_01855 SM00845 GatB domain DNQ11_01860 SM00046 Diacylglycerol kinase catalytic domain (presumed) DNQ11_01875 SM00382 ATPases associated with a variety of cellular activities DNQ11_01940 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DNQ11_01985 SM01007 Class II Aldolase and Adducin N-terminal domain DNQ11_02115 SM00062 Bacterial periplasmic substrate-binding proteins DNQ11_02115 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DNQ11_02120 SM00382 ATPases associated with a variety of cellular activities DNQ11_02130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_02130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_02135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_02135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_02140 SM00642 Alpha-amylase domain DNQ11_02160 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DNQ11_02160 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DNQ11_02160 SM00493 DNQ11_02160 DNQ11_02180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_02180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_02200 SM00382 ATPases associated with a variety of cellular activities DNQ11_02205 SM00382 ATPases associated with a variety of cellular activities DNQ11_02210 SM00060 Fibronectin type 3 domain DNQ11_02210 SM00636 DNQ11_02210 DNQ11_02210 SM00637 DNQ11_02210 DNQ11_02240 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_02265 SM00946 Prolyl-tRNA synthetase, C-terminal DNQ11_02310 SM00831 Cation transporter/ATPase, N-terminus DNQ11_02320 SM00226 Low molecular weight phosphatase family DNQ11_02420 SM00478 endonuclease III DNQ11_02435 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_02455 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_02460 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_02490 SM00382 ATPases associated with a variety of cellular activities DNQ11_02755 SM00382 ATPases associated with a variety of cellular activities DNQ11_02775 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_02840 SM00984 UDP binding domain DNQ11_02925 SM00478 endonuclease III DNQ11_02925 SM00525 DNQ11_02925 DNQ11_02950 SM00382 ATPases associated with a variety of cellular activities DNQ11_02970 SM00382 ATPases associated with a variety of cellular activities DNQ11_03130 SM00567 E-Z type HEAT repeats DNQ11_03145 SM00052 Putative diguanylate phosphodiesterase DNQ11_03145 SM00091 PAS domain DNQ11_03145 SM00267 diguanylate cyclase DNQ11_03155 SM00763 PrkA AAA domain DNQ11_03175 SM00364 Leucine-rich repeats, bacterial type DNQ11_03175 SM00365 Leucine-rich repeat, SDS22-like subfamily DNQ11_03175 SM00369 Leucine-rich repeats, typical (most populated) subfamily DNQ11_03175 SM00725 NEAr Transporter domain DNQ11_03190 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DNQ11_03200 SM00244 prohibitin homologues DNQ11_03205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_03205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_03210 SM00091 PAS domain DNQ11_03210 SM00387 Histidine kinase-like ATPases DNQ11_03215 SM00448 cheY-homologous receiver domain DNQ11_03240 SM00248 ankyrin repeats DNQ11_03250 SM00382 ATPases associated with a variety of cellular activities DNQ11_03275 SM00448 cheY-homologous receiver domain DNQ11_03275 SM00862 Transcriptional regulatory protein, C terminal DNQ11_03280 SM00387 Histidine kinase-like ATPases DNQ11_03280 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_03295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_03295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_03300 SM00387 Histidine kinase-like ATPases DNQ11_03305 SM00448 cheY-homologous receiver domain DNQ11_03315 SM00919 Malic enzyme, NAD binding domain DNQ11_03315 SM01274 DNQ11_03315 DNQ11_03330 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_03340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_03340 SM00387 Histidine kinase-like ATPases DNQ11_03340 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_03345 SM00448 cheY-homologous receiver domain DNQ11_03345 SM00862 Transcriptional regulatory protein, C terminal DNQ11_03365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DNQ11_03365 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DNQ11_03380 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DNQ11_03380 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DNQ11_03395 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_03410 SM00028 Tetratricopeptide repeats DNQ11_03410 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_03475 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_03505 SM00382 ATPases associated with a variety of cellular activities DNQ11_03530 SM00327 von Willebrand factor (vWF) type A domain DNQ11_03535 SM00382 ATPases associated with a variety of cellular activities DNQ11_03540 SM00155 Phospholipase D. Active site motifs. DNQ11_03555 SM00052 Putative diguanylate phosphodiesterase DNQ11_03555 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DNQ11_03555 SM00091 PAS domain DNQ11_03555 SM00267 diguanylate cyclase DNQ11_03565 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_03565 SM00866 DNQ11_03565 DNQ11_03575 SM00642 Alpha-amylase domain DNQ11_03610 SM00382 ATPases associated with a variety of cellular activities DNQ11_03615 SM00062 Bacterial periplasmic substrate-binding proteins DNQ11_03615 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DNQ11_03665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_03665 SM00387 Histidine kinase-like ATPases DNQ11_03665 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_03670 SM00448 cheY-homologous receiver domain DNQ11_03670 SM00862 Transcriptional regulatory protein, C terminal DNQ11_03710 SM00382 ATPases associated with a variety of cellular activities DNQ11_03715 SM00382 ATPases associated with a variety of cellular activities DNQ11_03725 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_03735 SM00354 helix_turn _helix lactose operon repressor DNQ11_03750 SM00382 ATPases associated with a variety of cellular activities DNQ11_03785 SM00829 Enoylreductase DNQ11_03795 SM00770 Zinc dependent phospholipase C (alpha toxin) DNQ11_03830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_03840 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_03885 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_03985 SM00899 DNQ11_03985 DNQ11_04130 SM00116 Domain in cystathionine beta-synthase and other proteins. DNQ11_04150 SM00287 Bacterial SH3 domain homologues DNQ11_04160 SM00382 ATPases associated with a variety of cellular activities DNQ11_04255 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_04295 SM00640 Glycosyl hydrolases family 32 DNQ11_04305 SM00354 helix_turn _helix lactose operon repressor DNQ11_04375 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_04395 SM00450 Rhodanese Homology Domain DNQ11_04405 SM00450 Rhodanese Homology Domain DNQ11_04410 SM00450 Rhodanese Homology Domain DNQ11_04410 SM00849 Metallo-beta-lactamase superfamily DNQ11_04420 SM00450 Rhodanese Homology Domain DNQ11_04425 SM00450 Rhodanese Homology Domain DNQ11_04450 SM00829 Enoylreductase DNQ11_04500 SM00287 Bacterial SH3 domain homologues DNQ11_04510 SM00382 ATPases associated with a variety of cellular activities DNQ11_04565 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen DNQ11_04670 SM00344 helix_turn_helix ASNC type DNQ11_04735 SM01060 DNQ11_04735 DNQ11_04780 SM00382 ATPases associated with a variety of cellular activities DNQ11_04795 SM00062 Bacterial periplasmic substrate-binding proteins DNQ11_04795 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DNQ11_04805 SM00382 ATPases associated with a variety of cellular activities DNQ11_04880 SM00644 DNQ11_04880 DNQ11_04890 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_04925 SM00957 SecA DEAD-like domain DNQ11_04925 SM00958 SecA preprotein cross-linking domain DNQ11_04940 SM00635 Bacterial Ig-like domain 2 DNQ11_05005 SM00646 DNQ11_05005 DNQ11_05070 SM00382 ATPases associated with a variety of cellular activities DNQ11_05100 SM00860 SMI1 / KNR4 family DNQ11_05105 SM00860 SMI1 / KNR4 family DNQ11_05120 SM00091 PAS domain DNQ11_05120 SM00387 Histidine kinase-like ATPases DNQ11_05125 SM00448 cheY-homologous receiver domain DNQ11_05160 SM00422 helix_turn_helix, mercury resistance DNQ11_05295 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_05340 SM01120 DNQ11_05340 DNQ11_05385 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_05420 SM00460 Transglutaminase/protease-like homologues DNQ11_05485 SM00331 Sigma factor PP2C-like phosphatases DNQ11_05485 SM00448 cheY-homologous receiver domain DNQ11_05490 SM00138 Methyltransferase, chemotaxis proteins DNQ11_05495 SM00387 Histidine kinase-like ATPases DNQ11_05495 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_05495 SM00448 cheY-homologous receiver domain DNQ11_05535 SM00829 Enoylreductase DNQ11_05575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_05605 SM00028 Tetratricopeptide repeats DNQ11_05630 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_05685 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_05735 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_05755 SM00382 ATPases associated with a variety of cellular activities DNQ11_05825 SM00422 helix_turn_helix, mercury resistance DNQ11_05930 SM00354 helix_turn _helix lactose operon repressor DNQ11_05940 SM00849 Metallo-beta-lactamase superfamily DNQ11_05965 SM00725 NEAr Transporter domain DNQ11_06030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_06045 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_06045 SM00871 Bacterial transcription activator, effector binding domain DNQ11_06060 SM00387 Histidine kinase-like ATPases DNQ11_06060 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_06065 SM00448 cheY-homologous receiver domain DNQ11_06065 SM00862 Transcriptional regulatory protein, C terminal DNQ11_06095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_06095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_06135 SM00357 Cold shock protein domain DNQ11_06250 SM01060 DNQ11_06250 DNQ11_06265 SM00642 Alpha-amylase domain DNQ11_06280 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_06330 SM00382 ATPases associated with a variety of cellular activities DNQ11_06330 SM01086 C-terminal, D2-small domain, of ClpB protein DNQ11_06365 SM00825 Beta-ketoacyl synthase DNQ11_06415 SM00382 ATPases associated with a variety of cellular activities DNQ11_06420 SM00382 ATPases associated with a variety of cellular activities DNQ11_06460 SM00155 Phospholipase D. Active site motifs. DNQ11_06490 SM01118 DNQ11_06490 DNQ11_06500 SM00954 Region found in RelA / SpoT proteins DNQ11_06655 SM00635 Bacterial Ig-like domain 2 DNQ11_06780 SM00861 Transketolase, pyrimidine binding domain DNQ11_06785 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_06885 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_06905 SM00382 ATPases associated with a variety of cellular activities DNQ11_06925 SM00014 Acid phosphatase homologues DNQ11_06975 SM00448 cheY-homologous receiver domain DNQ11_06975 SM00862 Transcriptional regulatory protein, C terminal DNQ11_06980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_06980 SM00387 Histidine kinase-like ATPases DNQ11_06980 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_06985 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_06985 SM00895 DNQ11_06985 DNQ11_07055 SM00822 DNQ11_07055 DNQ11_07120 SM00420 helix_turn_helix, Deoxyribose operon repressor DNQ11_07120 SM01134 DNQ11_07120 DNQ11_07155 SM00387 Histidine kinase-like ATPases DNQ11_07155 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_07160 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_07180 SM00387 Histidine kinase-like ATPases DNQ11_07180 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_07250 SM00465 GIY-YIG type nucleases (URI domain) DNQ11_07250 SM00496 Intron-encoded nuclease repeat 2 DNQ11_07265 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_07270 SM00382 ATPases associated with a variety of cellular activities DNQ11_07280 SM00382 ATPases associated with a variety of cellular activities DNQ11_07300 SM00344 helix_turn_helix ASNC type DNQ11_07425 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_07500 SM00917 LeuA allosteric (dimerisation) domain DNQ11_07505 SM01329 DNQ11_07505 DNQ11_07690 SM00387 Histidine kinase-like ATPases DNQ11_07695 SM00421 helix_turn_helix, Lux Regulon DNQ11_07695 SM00448 cheY-homologous receiver domain DNQ11_07795 SM00091 PAS domain DNQ11_07795 SM00387 Histidine kinase-like ATPases DNQ11_07795 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_07815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_07815 SM00387 Histidine kinase-like ATPases DNQ11_07815 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_07880 SM00363 S4 RNA-binding domain DNQ11_07900 SM00448 cheY-homologous receiver domain DNQ11_07900 SM00862 Transcriptional regulatory protein, C terminal DNQ11_07905 SM00091 PAS domain DNQ11_07905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_07905 SM00387 Histidine kinase-like ATPases DNQ11_07905 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_07915 SM00257 Lysin motif DNQ11_07940 SM00487 DEAD-like helicases superfamily DNQ11_07940 SM00490 helicase superfamily c-terminal domain DNQ11_07950 SM00257 Lysin motif DNQ11_07960 SM00422 helix_turn_helix, mercury resistance DNQ11_07970 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DNQ11_07985 SM00644 DNQ11_07985 DNQ11_07995 SM00870 DNQ11_07995 DNQ11_08010 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_08015 SM01240 DNQ11_08015 DNQ11_08070 SM00411 bacterial (prokaryotic) histone like domain DNQ11_08095 SM00562 DNQ11_08095 DNQ11_08115 SM00028 Tetratricopeptide repeats DNQ11_08120 SM00914 DNQ11_08120 DNQ11_08170 SM00986 Uracil DNA glycosylase superfamily DNQ11_08170 SM00987 UreE urease accessory protein, C-terminal domain DNQ11_08195 SM00851 MGS-like domain DNQ11_08245 SM00479 DNQ11_08245 DNQ11_08245 SM00487 DEAD-like helicases superfamily DNQ11_08245 SM00491 DNQ11_08245 DNQ11_08270 SM00478 endonuclease III DNQ11_08270 SM00525 DNQ11_08270 DNQ11_08280 SM00060 Fibronectin type 3 domain DNQ11_08340 SM00981 DNQ11_08340 DNQ11_08350 SM00491 DNQ11_08350 DNQ11_08415 SM00450 Rhodanese Homology Domain DNQ11_08455 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DNQ11_08455 SM00475 5'-3' exonuclease DNQ11_08570 SM00357 Cold shock protein domain DNQ11_08625 SM00849 Metallo-beta-lactamase superfamily DNQ11_08630 SM00422 helix_turn_helix, mercury resistance DNQ11_08630 SM00871 Bacterial transcription activator, effector binding domain DNQ11_08720 SM00448 cheY-homologous receiver domain DNQ11_08745 SM00138 Methyltransferase, chemotaxis proteins DNQ11_08820 SM00382 ATPases associated with a variety of cellular activities DNQ11_08860 SM00260 Two component signalling adaptor domain DNQ11_08860 SM00448 cheY-homologous receiver domain DNQ11_08895 SM00028 Tetratricopeptide repeats DNQ11_08915 SM00028 Tetratricopeptide repeats DNQ11_08980 SM00382 ATPases associated with a variety of cellular activities DNQ11_08980 SM00962 SRP54-type protein, GTPase domain DNQ11_08990 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DNQ11_09045 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_09065 SM00382 ATPases associated with a variety of cellular activities DNQ11_09080 SM00849 Metallo-beta-lactamase superfamily DNQ11_09080 SM01027 Beta-Casp domain DNQ11_09105 SM00835 Cupin DNQ11_09120 SM00855 Phosphoglycerate mutase family DNQ11_09180 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_09180 SM00895 DNQ11_09180 DNQ11_09190 SM00833 Cobalamin synthesis protein cobW C-terminal domain DNQ11_09285 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_09335 SM00421 helix_turn_helix, Lux Regulon DNQ11_09335 SM00448 cheY-homologous receiver domain DNQ11_09345 SM00382 ATPases associated with a variety of cellular activities DNQ11_09360 SM00155 Phospholipase D. Active site motifs. DNQ11_09380 SM00919 Malic enzyme, NAD binding domain DNQ11_09380 SM01274 DNQ11_09380 DNQ11_09385 SM00387 Histidine kinase-like ATPases DNQ11_09390 SM00448 cheY-homologous receiver domain DNQ11_09395 SM00487 DEAD-like helicases superfamily DNQ11_09395 SM00490 helicase superfamily c-terminal domain DNQ11_09465 SM00646 DNQ11_09465 DNQ11_09470 SM00047 Lysozyme subfamily 2 DNQ11_09655 SM00854 Bacterial capsule synthesis protein PGA_cap DNQ11_09685 SM00850 LytTr DNA-binding domain DNQ11_09755 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_09765 SM00448 cheY-homologous receiver domain DNQ11_09765 SM00862 Transcriptional regulatory protein, C terminal DNQ11_09785 SM00450 Rhodanese Homology Domain DNQ11_09835 SM01133 DNQ11_09835 DNQ11_09845 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DNQ11_09880 SM01011 Aminopeptidase P, N-terminal domain DNQ11_09890 SM00287 Bacterial SH3 domain homologues DNQ11_09900 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DNQ11_09900 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DNQ11_09900 SM00493 DNQ11_09900 DNQ11_09995 SM00833 Cobalamin synthesis protein cobW C-terminal domain DNQ11_10035 SM00382 ATPases associated with a variety of cellular activities DNQ11_10040 SM00382 ATPases associated with a variety of cellular activities DNQ11_10075 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_10095 SM00382 ATPases associated with a variety of cellular activities DNQ11_10100 SM00382 ATPases associated with a variety of cellular activities DNQ11_10135 SM00287 Bacterial SH3 domain homologues DNQ11_10150 SM00448 cheY-homologous receiver domain DNQ11_10150 SM00862 Transcriptional regulatory protein, C terminal DNQ11_10155 SM00387 Histidine kinase-like ATPases DNQ11_10155 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_10240 SM00448 cheY-homologous receiver domain DNQ11_10240 SM00862 Transcriptional regulatory protein, C terminal DNQ11_10245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_10245 SM00387 Histidine kinase-like ATPases DNQ11_10245 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_10340 SM00460 Transglutaminase/protease-like homologues DNQ11_10365 SM00966 SpoVT / AbrB like domain DNQ11_10375 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_10415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_10415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_10480 SM00833 Cobalamin synthesis protein cobW C-terminal domain DNQ11_10610 SM00855 Phosphoglycerate mutase family DNQ11_10665 SM00155 Phospholipase D. Active site motifs. DNQ11_10690 SM01091 Transporter associated domain DNQ11_10765 SM00244 prohibitin homologues DNQ11_10770 SM00855 Phosphoglycerate mutase family DNQ11_10785 SM01005 Alanine racemase, C-terminal domain DNQ11_10815 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_10945 SM00487 DEAD-like helicases superfamily DNQ11_10945 SM00490 helicase superfamily c-terminal domain DNQ11_10965 SM00829 Enoylreductase DNQ11_10985 SM00849 Metallo-beta-lactamase superfamily DNQ11_11000 SM00460 Transglutaminase/protease-like homologues DNQ11_11025 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DNQ11_11045 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_11050 SM00382 ATPases associated with a variety of cellular activities DNQ11_11060 SM00100 Cyclic nucleotide-monophosphate binding domain DNQ11_11060 SM00419 helix_turn_helix, cAMP Regulatory protein DNQ11_11065 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_11075 SM00852 Probable molybdopterin binding domain DNQ11_11145 SM00894 Excalibur calcium-binding domain DNQ11_11205 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_11210 SM00382 ATPases associated with a variety of cellular activities DNQ11_11240 SM00567 E-Z type HEAT repeats DNQ11_11240 SM00932 Scaffold protein Nfu/NifU N terminal DNQ11_11260 SM00836 DALR anticodon binding domain DNQ11_11260 SM01016 Arginyl tRNA synthetase N terminal dom DNQ11_11315 SM00327 von Willebrand factor (vWF) type A domain DNQ11_11330 SM00382 ATPases associated with a variety of cellular activities DNQ11_11385 SM00857 Resolvase, N terminal domain DNQ11_11435 SM00448 cheY-homologous receiver domain DNQ11_11435 SM00862 Transcriptional regulatory protein, C terminal DNQ11_11440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_11440 SM00387 Histidine kinase-like ATPases DNQ11_11440 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_11515 SM00382 ATPases associated with a variety of cellular activities DNQ11_11575 SM00563 Phosphate acyltransferases DNQ11_11690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DNQ11_11695 SM00421 helix_turn_helix, Lux Regulon DNQ11_11695 SM00448 cheY-homologous receiver domain DNQ11_11705 SM00829 Enoylreductase DNQ11_11765 SM00382 ATPases associated with a variety of cellular activities DNQ11_11805 SM01091 Transporter associated domain DNQ11_11820 SM00387 Histidine kinase-like ATPases DNQ11_11820 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_11840 SM00882 Coenzyme A transferase DNQ11_11845 SM00882 Coenzyme A transferase DNQ11_11860 SM00382 ATPases associated with a variety of cellular activities DNQ11_11905 SM00219 Tyrosine kinase, catalytic domain DNQ11_11915 SM00014 Acid phosphatase homologues DNQ11_11935 SM00860 SMI1 / KNR4 family DNQ11_11960 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_12045 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. DNQ11_12195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_12245 SM00823 Phosphopantetheine attachment site DNQ11_12245 SM00824 Thioesterase DNQ11_12250 SM00923 MbtH-like protein DNQ11_12270 SM00411 bacterial (prokaryotic) histone like domain DNQ11_12310 SM00363 S4 RNA-binding domain DNQ11_12315 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DNQ11_12375 SM00849 Metallo-beta-lactamase superfamily DNQ11_12405 SM00849 Metallo-beta-lactamase superfamily DNQ11_12425 SM01059 Chloramphenicol acetyltransferase DNQ11_12450 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_12490 SM00357 Cold shock protein domain DNQ11_12565 SM00859 Semialdehyde dehydrogenase, NAD binding domain DNQ11_12600 SM00382 ATPases associated with a variety of cellular activities DNQ11_12605 SM00382 ATPases associated with a variety of cellular activities DNQ11_12615 SM00646 DNQ11_12615 DNQ11_12625 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_12640 SM00835 Cupin DNQ11_12720 SM01207 DNQ11_12720 DNQ11_12755 SM00849 Metallo-beta-lactamase superfamily DNQ11_12770 SM00487 DEAD-like helicases superfamily DNQ11_12770 SM00490 helicase superfamily c-terminal domain DNQ11_12800 SM00382 ATPases associated with a variety of cellular activities DNQ11_12825 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_12830 SM00855 Phosphoglycerate mutase family DNQ11_12920 SM00014 Acid phosphatase homologues DNQ11_12925 SM00354 helix_turn _helix lactose operon repressor DNQ11_12995 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_13020 SM00646 DNQ11_13020 DNQ11_13035 SM00382 ATPases associated with a variety of cellular activities DNQ11_13045 SM00052 Putative diguanylate phosphodiesterase DNQ11_13045 SM00091 PAS domain DNQ11_13045 SM00267 diguanylate cyclase DNQ11_13060 SM00860 SMI1 / KNR4 family DNQ11_13070 SM00450 Rhodanese Homology Domain DNQ11_13070 SM00849 Metallo-beta-lactamase superfamily DNQ11_13085 SM00382 ATPases associated with a variety of cellular activities DNQ11_13120 SM00878 Biotin carboxylase C-terminal domain DNQ11_13180 SM00387 Histidine kinase-like ATPases DNQ11_13180 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_13185 SM00448 cheY-homologous receiver domain DNQ11_13185 SM00862 Transcriptional regulatory protein, C terminal DNQ11_13240 SM00382 ATPases associated with a variety of cellular activities DNQ11_13260 SM00422 helix_turn_helix, mercury resistance DNQ11_13260 SM00871 Bacterial transcription activator, effector binding domain DNQ11_13290 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_13305 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_13365 SM00448 cheY-homologous receiver domain DNQ11_13365 SM00862 Transcriptional regulatory protein, C terminal DNQ11_13380 SM00382 ATPases associated with a variety of cellular activities DNQ11_13395 SM00382 ATPases associated with a variety of cellular activities DNQ11_13425 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_13430 SM01209 DNQ11_13430 DNQ11_13575 SM00091 PAS domain DNQ11_13575 SM00387 Histidine kinase-like ATPases DNQ11_13575 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_13600 SM00382 ATPases associated with a variety of cellular activities DNQ11_13615 SM00387 Histidine kinase-like ATPases DNQ11_13615 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_13630 SM00829 Enoylreductase DNQ11_13635 SM00740 DNQ11_13635 DNQ11_13710 SM00422 helix_turn_helix, mercury resistance DNQ11_13820 SM00480 DNA polymerase III beta subunit DNQ11_13930 SM00465 GIY-YIG type nucleases (URI domain) DNQ11_14035 SM00642 Alpha-amylase domain DNQ11_14055 SM00871 Bacterial transcription activator, effector binding domain DNQ11_14075 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_14195 SM00382 ATPases associated with a variety of cellular activities DNQ11_14215 SM00420 helix_turn_helix, Deoxyribose operon repressor DNQ11_14215 SM01134 DNQ11_14215 DNQ11_14265 SM00861 Transketolase, pyrimidine binding domain DNQ11_14325 SM00116 Domain in cystathionine beta-synthase and other proteins. DNQ11_14325 SM00382 ATPases associated with a variety of cellular activities DNQ11_14360 SM00060 Fibronectin type 3 domain DNQ11_14360 SM00495 Chitin-binding domain type 3 DNQ11_14405 SM00849 Metallo-beta-lactamase superfamily DNQ11_14475 SM00341 Helicase and RNase D C-terminal DNQ11_14475 SM00487 DEAD-like helicases superfamily DNQ11_14475 SM00490 helicase superfamily c-terminal domain DNQ11_14475 SM00956 DNQ11_14475 DNQ11_14525 SM01131 DNQ11_14525 DNQ11_14560 SM01130 DNQ11_14560 DNQ11_14580 SM00091 PAS domain DNQ11_14580 SM00382 ATPases associated with a variety of cellular activities DNQ11_14650 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DNQ11_14705 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DNQ11_14710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_14710 SM00387 Histidine kinase-like ATPases DNQ11_14710 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_14920 SM00382 ATPases associated with a variety of cellular activities DNQ11_14995 SM00062 Bacterial periplasmic substrate-binding proteins DNQ11_15000 SM00382 ATPases associated with a variety of cellular activities DNQ11_15030 SM00028 Tetratricopeptide repeats DNQ11_15135 SM00382 ATPases associated with a variety of cellular activities DNQ11_15195 SM00830 Chorismate mutase type II DNQ11_15240 SM00287 Bacterial SH3 domain homologues DNQ11_15295 SM00382 ATPases associated with a variety of cellular activities DNQ11_15315 SM01133 DNQ11_15315 DNQ11_15345 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_15365 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DNQ11_15385 SM00346 helix_turn_helix isocitrate lyase regulation DNQ11_15410 SM00098 Alkaline phosphatase homologues DNQ11_15420 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_15445 SM00850 LytTr DNA-binding domain DNQ11_15545 SM01060 DNQ11_15545 DNQ11_15595 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_15605 SM00889 Elongation factor G, domain IV DNQ11_15630 SM00382 ATPases associated with a variety of cellular activities DNQ11_15635 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_15650 SM00382 ATPases associated with a variety of cellular activities DNQ11_15675 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_15675 SM00871 Bacterial transcription activator, effector binding domain DNQ11_15700 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_15720 SM00387 Histidine kinase-like ATPases DNQ11_15720 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_15725 SM00448 cheY-homologous receiver domain DNQ11_15725 SM00862 Transcriptional regulatory protein, C terminal DNQ11_15870 SM00797 Allophanate hydrolase subunit 2 DNQ11_15875 SM00796 Allophanate hydrolase subunit 1 DNQ11_15880 SM00346 helix_turn_helix isocitrate lyase regulation DNQ11_15900 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_15970 SM00849 Metallo-beta-lactamase superfamily DNQ11_16055 SM00870 DNQ11_16055 DNQ11_16060 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_16095 SM00919 Malic enzyme, NAD binding domain DNQ11_16095 SM01274 DNQ11_16095 DNQ11_16125 SM00448 cheY-homologous receiver domain DNQ11_16175 SM01060 DNQ11_16175 DNQ11_16325 SM00382 ATPases associated with a variety of cellular activities DNQ11_16350 SM00226 Low molecular weight phosphatase family DNQ11_16365 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_16375 SM00028 Tetratricopeptide repeats DNQ11_16400 SM00344 helix_turn_helix ASNC type DNQ11_16435 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_16475 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_16520 SM00448 cheY-homologous receiver domain DNQ11_16520 SM00862 Transcriptional regulatory protein, C terminal DNQ11_16525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_16525 SM00387 Histidine kinase-like ATPases DNQ11_16525 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_16590 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_16640 SM00382 ATPases associated with a variety of cellular activities DNQ11_16650 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_16660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_16660 SM00387 Histidine kinase-like ATPases DNQ11_16660 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_16665 SM00448 cheY-homologous receiver domain DNQ11_16665 SM00862 Transcriptional regulatory protein, C terminal DNQ11_16675 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_16775 SM00354 helix_turn _helix lactose operon repressor DNQ11_16780 SM00028 Tetratricopeptide repeats DNQ11_16815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_16815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_16815 SM00319 Homologues of the ligand binding domain of Tar DNQ11_16845 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DNQ11_16870 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_16920 SM00344 helix_turn_helix ASNC type DNQ11_16990 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_17055 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_17090 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_17155 SM00382 ATPases associated with a variety of cellular activities DNQ11_17200 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_17205 SM01207 DNQ11_17205 DNQ11_17270 SM00382 ATPases associated with a variety of cellular activities DNQ11_17285 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_17345 SM01266 DNQ11_17345 DNQ11_17355 SM00382 ATPases associated with a variety of cellular activities DNQ11_17410 SM00028 Tetratricopeptide repeats DNQ11_17435 SM01091 Transporter associated domain DNQ11_17440 SM00422 helix_turn_helix, mercury resistance DNQ11_17485 SM01350 DNQ11_17485 DNQ11_17490 SM00861 Transketolase, pyrimidine binding domain DNQ11_17505 SM00829 Enoylreductase DNQ11_17520 SM00829 Enoylreductase DNQ11_17540 SM01276 DNQ11_17540 DNQ11_17590 SM00914 DNQ11_17590 DNQ11_17625 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_17625 SM00866 DNQ11_17625 DNQ11_17660 SM00849 Metallo-beta-lactamase superfamily DNQ11_17725 SM00248 ankyrin repeats DNQ11_17730 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_17770 SM00871 Bacterial transcription activator, effector binding domain DNQ11_17790 SM00382 ATPases associated with a variety of cellular activities DNQ11_17825 SM00849 Metallo-beta-lactamase superfamily DNQ11_17830 SM00641 Glycosyl hydrolases family 25 DNQ11_17895 SM00849 Metallo-beta-lactamase superfamily DNQ11_17900 SM00829 Enoylreductase DNQ11_18030 SM00829 Enoylreductase DNQ11_18035 SM00855 Phosphoglycerate mutase family DNQ11_18045 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DNQ11_18045 SM00534 ATPase domain of DNA mismatch repair MUTS family DNQ11_18055 SM00642 Alpha-amylase domain DNQ11_18125 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_18130 SM00829 Enoylreductase DNQ11_18220 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DNQ11_18270 SM00479 DNQ11_18270 DNQ11_18275 SM00357 Cold shock protein domain DNQ11_18300 SM01022 DNQ11_18300 DNQ11_18410 SM00852 Probable molybdopterin binding domain DNQ11_18430 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_18450 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DNQ11_18450 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DNQ11_18555 SM00382 ATPases associated with a variety of cellular activities DNQ11_18570 SM00434 DNA Topoisomerase IV DNQ11_18575 SM00387 Histidine kinase-like ATPases DNQ11_18575 SM00433 TopoisomeraseII DNQ11_18585 SM00881 CoA binding domain DNQ11_18590 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DNQ11_18595 SM00448 cheY-homologous receiver domain DNQ11_18595 SM00862 Transcriptional regulatory protein, C terminal DNQ11_18610 SM01207 DNQ11_18610 DNQ11_18625 SM00257 Lysin motif DNQ11_18625 SM00636 DNQ11_18625 DNQ11_18645 SM00479 DNQ11_18645 DNQ11_18665 SM00382 ATPases associated with a variety of cellular activities DNQ11_18710 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DNQ11_18785 SM00644 DNQ11_18785 DNQ11_18785 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. DNQ11_18790 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DNQ11_18810 SM00091 PAS domain DNQ11_18810 SM00387 Histidine kinase-like ATPases DNQ11_18810 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_18840 SM01058 CarD-like/TRCF domain DNQ11_18985 SM00644 DNQ11_18985 DNQ11_19000 SM00382 ATPases associated with a variety of cellular activities DNQ11_19005 SM00382 ATPases associated with a variety of cellular activities DNQ11_19020 SM00861 Transketolase, pyrimidine binding domain DNQ11_19050 SM00382 ATPases associated with a variety of cellular activities DNQ11_19055 SM00062 Bacterial periplasmic substrate-binding proteins DNQ11_19070 SM00857 Resolvase, N terminal domain DNQ11_19100 SM00028 Tetratricopeptide repeats DNQ11_19135 SM00287 Bacterial SH3 domain homologues DNQ11_19135 SM00644 DNQ11_19135 DNQ11_19290 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_19380 SM00382 ATPases associated with a variety of cellular activities DNQ11_19430 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_19435 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_19460 SM01230 DNQ11_19460 DNQ11_19465 SM00422 helix_turn_helix, mercury resistance DNQ11_19490 SM00382 ATPases associated with a variety of cellular activities DNQ11_19520 SM00287 Bacterial SH3 domain homologues DNQ11_19540 SM00420 helix_turn_helix, Deoxyribose operon repressor DNQ11_19540 SM01134 DNQ11_19540 DNQ11_19575 SM00636 DNQ11_19575 DNQ11_19595 SM00411 bacterial (prokaryotic) histone like domain DNQ11_19630 SM00382 ATPases associated with a variety of cellular activities DNQ11_19655 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_19665 SM00478 endonuclease III DNQ11_19700 SM00052 Putative diguanylate phosphodiesterase DNQ11_19700 SM00091 PAS domain DNQ11_19700 SM00267 diguanylate cyclase DNQ11_19730 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_19755 SM00148 Phospholipase C, catalytic domain (part); domain X DNQ11_19765 SM00257 Lysin motif DNQ11_19795 SM00387 Histidine kinase-like ATPases DNQ11_19795 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_19800 SM00448 cheY-homologous receiver domain DNQ11_19800 SM00862 Transcriptional regulatory protein, C terminal DNQ11_19815 SM00382 ATPases associated with a variety of cellular activities DNQ11_19820 SM00853 MutL C terminal dimerisation domain DNQ11_19820 SM01340 DNQ11_19820 DNQ11_19825 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DNQ11_19825 SM00534 ATPase domain of DNA mismatch repair MUTS family DNQ11_19840 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_19870 SM00322 K homology RNA-binding domain DNQ11_19870 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_19885 SM00852 Probable molybdopterin binding domain DNQ11_19935 SM00382 ATPases associated with a variety of cellular activities DNQ11_19945 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_19945 SM00866 DNQ11_19945 DNQ11_19950 SM00382 ATPases associated with a variety of cellular activities DNQ11_19950 SM00843 DNQ11_19950 DNQ11_19965 SM00849 Metallo-beta-lactamase superfamily DNQ11_19975 SM01130 DNQ11_19975 DNQ11_19985 SM00859 Semialdehyde dehydrogenase, NAD binding domain DNQ11_20020 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_20020 SM00322 K homology RNA-binding domain DNQ11_20025 SM01387 DNQ11_20025 DNQ11_20030 SM00904 Riboflavin kinase DNQ11_20065 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_20065 SM00322 K homology RNA-binding domain DNQ11_20075 SM00479 DNQ11_20075 DNQ11_20075 SM00481 DNA polymerase alpha chain like domain DNQ11_20090 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DNQ11_20135 SM00382 ATPases associated with a variety of cellular activities DNQ11_20135 SM01086 C-terminal, D2-small domain, of ClpB protein DNQ11_20155 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DNQ11_20155 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DNQ11_20155 SM00493 DNQ11_20155 DNQ11_20165 SM00881 CoA binding domain DNQ11_20215 SM00382 ATPases associated with a variety of cellular activities DNQ11_20215 SM00962 SRP54-type protein, GTPase domain DNQ11_20215 SM00963 SRP54-type protein, helical bundle domain DNQ11_20225 SM00382 ATPases associated with a variety of cellular activities DNQ11_20225 SM00962 SRP54-type protein, GTPase domain DNQ11_20225 SM00963 SRP54-type protein, helical bundle domain DNQ11_20230 SM00968 SMC proteins Flexible Hinge Domain DNQ11_20235 SM00358 Double-stranded RNA binding motif DNQ11_20235 SM00535 Ribonuclease III family DNQ11_20245 SM00822 DNQ11_20245 DNQ11_20250 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DNQ11_20265 SM00487 DEAD-like helicases superfamily DNQ11_20265 SM00490 helicase superfamily c-terminal domain DNQ11_20270 SM01120 DNQ11_20270 DNQ11_20270 SM01121 DNQ11_20270 DNQ11_20290 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain DNQ11_20305 SM00220 Serine/Threonine protein kinases, catalytic domain DNQ11_20305 SM00740 DNQ11_20305 DNQ11_20310 SM00331 Sigma factor PP2C-like phosphatases DNQ11_20310 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DNQ11_20335 SM00487 DEAD-like helicases superfamily DNQ11_20335 SM00490 helicase superfamily c-terminal domain DNQ11_20345 SM01409 DNQ11_20345 DNQ11_20350 SM00072 Guanylate kinase homologues. DNQ11_20365 SM00831 Cation transporter/ATPase, N-terminus DNQ11_20415 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DNQ11_20430 SM00851 MGS-like domain DNQ11_20430 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DNQ11_20430 SM01209 DNQ11_20430 DNQ11_20435 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DNQ11_20460 SM00363 S4 RNA-binding domain DNQ11_20485 SM00363 S4 RNA-binding domain DNQ11_20530 SM00864 Tubulin/FtsZ family, GTPase domain DNQ11_20530 SM00865 Tubulin/FtsZ family, C-terminal domain DNQ11_20535 SM00842 Cell division protein FtsA DNQ11_20575 SM00740 DNQ11_20575 DNQ11_20580 SM00740 DNQ11_20580 DNQ11_20610 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains DNQ11_20650 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_20665 SM00644 DNQ11_20665 DNQ11_20740 SM00060 Fibronectin type 3 domain DNQ11_20770 SM00507 HNH nucleases DNQ11_20815 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_20900 SM00382 ATPases associated with a variety of cellular activities DNQ11_20925 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_20930 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_20950 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_20980 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DNQ11_21020 SM00855 Phosphoglycerate mutase family DNQ11_21085 SM00878 Biotin carboxylase C-terminal domain DNQ11_21110 SM00670 Large family of predicted nucleotide-binding domains DNQ11_21135 SM00838 Elongation factor G C-terminus DNQ11_21215 SM00861 Transketolase, pyrimidine binding domain DNQ11_21250 SM00849 Metallo-beta-lactamase superfamily DNQ11_21315 SM00052 Putative diguanylate phosphodiesterase DNQ11_21365 SM00267 diguanylate cyclase DNQ11_21415 SM00387 Histidine kinase-like ATPases DNQ11_21415 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_21430 SM00354 helix_turn _helix lactose operon repressor DNQ11_21450 SM00642 Alpha-amylase domain DNQ11_21455 SM00642 Alpha-amylase domain DNQ11_21460 SM00382 ATPases associated with a variety of cellular activities DNQ11_21495 SM00382 ATPases associated with a variety of cellular activities DNQ11_21585 SM01007 Class II Aldolase and Adducin N-terminal domain DNQ11_21615 SM00267 diguanylate cyclase DNQ11_21650 SM01061 CAT RNA binding domain DNQ11_21660 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_21660 SM00866 DNQ11_21660 DNQ11_21675 SM00849 Metallo-beta-lactamase superfamily DNQ11_21780 SM00387 Histidine kinase-like ATPases DNQ11_21790 SM00936 Penicillin-binding protein 5, C-terminal domain DNQ11_21800 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_21805 SM00382 ATPases associated with a variety of cellular activities DNQ11_21825 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_21845 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DNQ11_21940 SM00354 helix_turn _helix lactose operon repressor DNQ11_21960 SM00704 CDGSH-type zinc finger. Function unknown. DNQ11_21990 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_21990 SM00876 Biotin and Thiamin Synthesis associated domain DNQ11_22045 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_22080 SM00859 Semialdehyde dehydrogenase, NAD binding domain DNQ11_22120 SM00849 Metallo-beta-lactamase superfamily DNQ11_22175 SM00382 ATPases associated with a variety of cellular activities DNQ11_22185 SM00062 Bacterial periplasmic substrate-binding proteins DNQ11_22185 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DNQ11_22225 SM00861 Transketolase, pyrimidine binding domain DNQ11_22245 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DNQ11_22260 SM00091 PAS domain DNQ11_22260 SM00382 ATPases associated with a variety of cellular activities DNQ11_22285 SM00448 cheY-homologous receiver domain DNQ11_22295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DNQ11_22310 SM00363 S4 RNA-binding domain DNQ11_22315 SM00861 Transketolase, pyrimidine binding domain DNQ11_22350 SM00878 Biotin carboxylase C-terminal domain DNQ11_22400 SM00382 ATPases associated with a variety of cellular activities DNQ11_22420 SM00841 Elongation factor P, C-terminal DNQ11_22420 SM01185 DNQ11_22420 DNQ11_22455 SM00529 Helix-turn-helix diphteria tox regulatory element DNQ11_22475 SM00450 Rhodanese Homology Domain DNQ11_22480 SM00354 helix_turn _helix lactose operon repressor DNQ11_22535 SM00382 ATPases associated with a variety of cellular activities DNQ11_22540 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_22575 SM00487 DEAD-like helicases superfamily DNQ11_22575 SM00490 helicase superfamily c-terminal domain DNQ11_22615 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. DNQ11_22650 SM00382 ATPases associated with a variety of cellular activities DNQ11_22705 SM01018 B12 binding domain DNQ11_22730 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_22740 SM00849 Metallo-beta-lactamase superfamily DNQ11_22780 SM00382 ATPases associated with a variety of cellular activities DNQ11_22845 SM00382 ATPases associated with a variety of cellular activities DNQ11_22860 SM00518 AP endonuclease family 2 DNQ11_22865 SM00487 DEAD-like helicases superfamily DNQ11_22865 SM00490 helicase superfamily c-terminal domain DNQ11_22900 SM00400 zinc finger DNQ11_22900 SM00493 DNQ11_22900 DNQ11_22900 SM00766 DNA primase DnaG DnaB-binding DNQ11_22920 SM00116 Domain in cystathionine beta-synthase and other proteins. DNQ11_22955 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_22995 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_23010 SM00271 DnaJ molecular chaperone homology domain DNQ11_23030 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_23040 SM00838 Elongation factor G C-terminus DNQ11_23070 SM00849 Metallo-beta-lactamase superfamily DNQ11_23080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DNQ11_23100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_23110 SM01103 DNQ11_23110 DNQ11_23170 SM00954 Region found in RelA / SpoT proteins DNQ11_23180 SM00098 Alkaline phosphatase homologues DNQ11_23205 SM00855 Phosphoglycerate mutase family DNQ11_23250 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_23275 SM00382 ATPases associated with a variety of cellular activities DNQ11_23370 SM00732 Likely ribonuclease with RNase H fold. DNQ11_23380 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DNQ11_23415 SM00028 Tetratricopeptide repeats DNQ11_23435 SM00382 ATPases associated with a variety of cellular activities DNQ11_23475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_23475 SM00954 Region found in RelA / SpoT proteins DNQ11_23520 SM01323 DNQ11_23520 DNQ11_23540 SM00382 ATPases associated with a variety of cellular activities DNQ11_23545 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DNQ11_23570 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_23585 SM00257 Lysin motif DNQ11_23635 SM00382 ATPases associated with a variety of cellular activities DNQ11_23645 SM00448 cheY-homologous receiver domain DNQ11_23645 SM00862 Transcriptional regulatory protein, C terminal DNQ11_23655 SM01317 DNQ11_23655 DNQ11_23750 SM00257 Lysin motif DNQ11_23760 SM01004 Delta-aminolevulinic acid dehydratase DNQ11_23785 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_23800 SM00382 ATPases associated with a variety of cellular activities DNQ11_23800 SM00464 Found in ATP-dependent protease La (LON) DNQ11_23805 SM00382 ATPases associated with a variety of cellular activities DNQ11_23810 SM00382 ATPases associated with a variety of cellular activities DNQ11_23810 SM00994 ClpX C4-type zinc finger DNQ11_23810 SM01086 C-terminal, D2-small domain, of ClpB protein DNQ11_23875 SM00909 Sporulation and spore germination DNQ11_23910 SM00421 helix_turn_helix, Lux Regulon DNQ11_23950 SM00382 ATPases associated with a variety of cellular activities DNQ11_23955 SM00382 ATPases associated with a variety of cellular activities DNQ11_23965 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_23965 SM00448 cheY-homologous receiver domain DNQ11_23985 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_24010 SM00382 ATPases associated with a variety of cellular activities DNQ11_24060 SM00465 GIY-YIG type nucleases (URI domain) DNQ11_24070 SM00893 Electron transfer flavoprotein domain DNQ11_24075 SM00893 Electron transfer flavoprotein domain DNQ11_24145 SM00382 ATPases associated with a variety of cellular activities DNQ11_24150 SM00387 Histidine kinase-like ATPases DNQ11_24150 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_24155 SM00448 cheY-homologous receiver domain DNQ11_24155 SM00862 Transcriptional regulatory protein, C terminal DNQ11_24170 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DNQ11_24190 SM00382 ATPases associated with a variety of cellular activities DNQ11_24205 SM00725 NEAr Transporter domain DNQ11_24210 SM00725 NEAr Transporter domain DNQ11_24215 SM00725 NEAr Transporter domain DNQ11_24225 SM00363 S4 RNA-binding domain DNQ11_24235 SM00463 Small MutS-related domain DNQ11_24235 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DNQ11_24235 SM00534 ATPase domain of DNA mismatch repair MUTS family DNQ11_24240 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DNQ11_24240 SM00481 DNA polymerase alpha chain like domain DNQ11_24240 SM00483 DNA polymerase X family DNQ11_24280 SM00873 B3/4 domain DNQ11_24280 SM00874 tRNA synthetase B5 domain DNQ11_24280 SM00896 Ferredoxin-fold anticodon binding domain DNQ11_24290 SM00967 RNA 2'-O ribose methyltransferase substrate binding DNQ11_24365 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DNQ11_24375 SM00382 ATPases associated with a variety of cellular activities DNQ11_24400 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DNQ11_24415 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain DNQ11_24415 SM01232 DNQ11_24415 DNQ11_24420 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DNQ11_24420 SM00474 3'-5' exonuclease DNQ11_24420 SM00475 5'-3' exonuclease DNQ11_24420 SM00482 DNA polymerase A domain DNQ11_24425 SM00091 PAS domain DNQ11_24425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_24425 SM00387 Histidine kinase-like ATPases DNQ11_24425 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_24430 SM00448 cheY-homologous receiver domain DNQ11_24430 SM00862 Transcriptional regulatory protein, C terminal DNQ11_24455 SM01329 DNQ11_24455 DNQ11_24505 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_24510 SM00919 Malic enzyme, NAD binding domain DNQ11_24510 SM01274 DNQ11_24510 DNQ11_24515 SM00481 DNA polymerase alpha chain like domain DNQ11_24555 SM00116 Domain in cystathionine beta-synthase and other proteins. DNQ11_24565 SM00849 Metallo-beta-lactamase superfamily DNQ11_24625 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_24635 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DNQ11_24635 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DNQ11_24765 SM00981 DNQ11_24765 DNQ11_24810 SM00363 S4 RNA-binding domain DNQ11_24810 SM01390 DNQ11_24810 DNQ11_24825 SM00363 S4 RNA-binding domain DNQ11_24860 SM00116 Domain in cystathionine beta-synthase and other proteins. DNQ11_24875 SM00448 cheY-homologous receiver domain DNQ11_24875 SM00862 Transcriptional regulatory protein, C terminal DNQ11_24880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_24880 SM00387 Histidine kinase-like ATPases DNQ11_24880 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_24885 SM00248 ankyrin repeats DNQ11_24920 SM00354 helix_turn _helix lactose operon repressor DNQ11_24980 SM00843 DNQ11_24980 DNQ11_25020 SM00849 Metallo-beta-lactamase superfamily DNQ11_25040 SM00642 Alpha-amylase domain DNQ11_25060 SM00420 helix_turn_helix, Deoxyribose operon repressor DNQ11_25065 SM00363 S4 RNA-binding domain DNQ11_25085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_25115 SM01058 CarD-like/TRCF domain DNQ11_25150 SM00852 Probable molybdopterin binding domain DNQ11_25185 SM00450 Rhodanese Homology Domain DNQ11_25265 SM00382 ATPases associated with a variety of cellular activities DNQ11_25285 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_25300 SM00382 ATPases associated with a variety of cellular activities DNQ11_25345 SM00014 Acid phosphatase homologues DNQ11_25360 SM00852 Probable molybdopterin binding domain DNQ11_25425 SM00387 Histidine kinase-like ATPases DNQ11_25430 SM00387 Histidine kinase-like ATPases DNQ11_25430 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_25465 SM00382 ATPases associated with a variety of cellular activities DNQ11_25525 SM01234 DNQ11_25525 DNQ11_25530 SM00947 Carbonic anhydrase DNQ11_25555 SM00894 Excalibur calcium-binding domain DNQ11_25615 SM00899 DNQ11_25615 DNQ11_25625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_25625 SM00387 Histidine kinase-like ATPases DNQ11_25625 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_25630 SM00448 cheY-homologous receiver domain DNQ11_25630 SM00862 Transcriptional regulatory protein, C terminal DNQ11_25660 SM00046 Diacylglycerol kinase catalytic domain (presumed) DNQ11_25715 SM00382 ATPases associated with a variety of cellular activities DNQ11_25720 SM00342 helix_turn_helix, arabinose operon control protein DNQ11_25720 SM00871 Bacterial transcription activator, effector binding domain DNQ11_25725 SM00448 cheY-homologous receiver domain DNQ11_25725 SM00862 Transcriptional regulatory protein, C terminal DNQ11_25730 SM00387 Histidine kinase-like ATPases DNQ11_25745 SM00382 ATPases associated with a variety of cellular activities DNQ11_25765 SM00345 helix_turn_helix gluconate operon transcriptional repressor DNQ11_25765 SM00866 DNQ11_25765 DNQ11_25805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_25805 SM00387 Histidine kinase-like ATPases DNQ11_25805 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_25810 SM00448 cheY-homologous receiver domain DNQ11_25810 SM00862 Transcriptional regulatory protein, C terminal DNQ11_25815 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DNQ11_25855 SM00357 Cold shock protein domain DNQ11_25895 SM00642 Alpha-amylase domain DNQ11_26085 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_26095 SM00344 helix_turn_helix ASNC type DNQ11_26125 SM01298 DNQ11_26125 DNQ11_26130 SM00479 DNQ11_26130 DNQ11_26230 SM00871 Bacterial transcription activator, effector binding domain DNQ11_26290 SM00382 ATPases associated with a variety of cellular activities DNQ11_26315 SM00860 SMI1 / KNR4 family DNQ11_26385 SM00420 helix_turn_helix, Deoxyribose operon repressor DNQ11_26425 SM00422 helix_turn_helix, mercury resistance DNQ11_26440 SM00855 Phosphoglycerate mutase family DNQ11_26450 SM00729 Elongator protein 3, MiaB family, Radical SAM DNQ11_26520 SM00382 ATPases associated with a variety of cellular activities DNQ11_26540 SM00382 ATPases associated with a variety of cellular activities DNQ11_26540 SM00930 DNQ11_26540 DNQ11_26555 SM00493 DNQ11_26555 DNQ11_26660 SM00849 Metallo-beta-lactamase superfamily DNQ11_26715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_26715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_26790 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_26815 SM00448 cheY-homologous receiver domain DNQ11_26815 SM00862 Transcriptional regulatory protein, C terminal DNQ11_26820 SM00387 Histidine kinase-like ATPases DNQ11_26820 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_26840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_26840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_26860 SM00347 helix_turn_helix multiple antibiotic resistance protein DNQ11_26960 SM01276 DNQ11_26960 DNQ11_27000 SM00363 S4 RNA-binding domain DNQ11_27010 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain DNQ11_27015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_27070 SM00382 ATPases associated with a variety of cellular activities DNQ11_27090 SM00448 cheY-homologous receiver domain DNQ11_27090 SM00862 Transcriptional regulatory protein, C terminal DNQ11_27110 SM00316 Ribosomal protein S1-like RNA-binding domain DNQ11_27110 SM00357 Cold shock protein domain DNQ11_27110 SM00955 DNQ11_27110 DNQ11_27230 SM00507 HNH nucleases DNQ11_27265 SM01192 DNQ11_27265 DNQ11_27265 SM01193 DNQ11_27265 DNQ11_27285 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DNQ11_27390 SM00028 Tetratricopeptide repeats DNQ11_27430 SM00487 DEAD-like helicases superfamily DNQ11_27430 SM00490 helicase superfamily c-terminal domain DNQ11_27450 SM00422 helix_turn_helix, mercury resistance DNQ11_27470 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_27490 SM00422 helix_turn_helix, mercury resistance DNQ11_27500 SM00382 ATPases associated with a variety of cellular activities DNQ11_27510 SM00382 ATPases associated with a variety of cellular activities DNQ11_27520 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DNQ11_27520 SM00245 tail specific protease DNQ11_27530 SM00382 ATPases associated with a variety of cellular activities DNQ11_27550 SM00957 SecA DEAD-like domain DNQ11_27550 SM00958 SecA preprotein cross-linking domain DNQ11_27560 SM00357 Cold shock protein domain DNQ11_27570 SM00487 DEAD-like helicases superfamily DNQ11_27570 SM00490 helicase superfamily c-terminal domain DNQ11_27610 SM00984 UDP binding domain DNQ11_27625 SM00382 ATPases associated with a variety of cellular activities DNQ11_27630 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. DNQ11_27830 SM00287 Bacterial SH3 domain homologues DNQ11_27860 SM00487 DEAD-like helicases superfamily DNQ11_27860 SM00490 helicase superfamily c-terminal domain DNQ11_27905 SM00382 ATPases associated with a variety of cellular activities DNQ11_27915 SM00530 Helix-turn-helix XRE-family like proteins DNQ11_27940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_27940 SM00387 Histidine kinase-like ATPases DNQ11_27940 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_27945 SM00448 cheY-homologous receiver domain DNQ11_27945 SM00862 Transcriptional regulatory protein, C terminal DNQ11_27975 SM00287 Bacterial SH3 domain homologues DNQ11_27975 SM00382 ATPases associated with a variety of cellular activities DNQ11_27985 SM00984 UDP binding domain DNQ11_28055 SM00382 ATPases associated with a variety of cellular activities DNQ11_28145 SM00052 Putative diguanylate phosphodiesterase DNQ11_28145 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DNQ11_28145 SM00091 PAS domain DNQ11_28145 SM00267 diguanylate cyclase DNQ11_28165 SM00382 ATPases associated with a variety of cellular activities DNQ11_28235 SM00226 Low molecular weight phosphatase family DNQ11_28255 SM00903 Flavin reductase like domain DNQ11_28295 SM00937 DNQ11_28295 DNQ11_28310 SM00357 Cold shock protein domain DNQ11_28310 SM00382 ATPases associated with a variety of cellular activities DNQ11_28310 SM00959 Rho termination factor, N-terminal domain DNQ11_28335 SM00448 cheY-homologous receiver domain DNQ11_28385 SM00155 Phospholipase D. Active site motifs. DNQ11_28395 SM00052 Putative diguanylate phosphodiesterase DNQ11_28395 SM00267 diguanylate cyclase DNQ11_28415 SM00421 helix_turn_helix, Lux Regulon DNQ11_28415 SM00448 cheY-homologous receiver domain DNQ11_28420 SM00387 Histidine kinase-like ATPases DNQ11_28430 SM00382 ATPases associated with a variety of cellular activities DNQ11_28480 SM00836 DALR anticodon binding domain DNQ11_28480 SM01016 Arginyl tRNA synthetase N terminal dom DNQ11_28525 SM00422 helix_turn_helix, mercury resistance DNQ11_28560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DNQ11_28615 SM00936 Penicillin-binding protein 5, C-terminal domain DNQ11_28660 SM00986 Uracil DNA glycosylase superfamily DNQ11_28660 SM00987 UreE urease accessory protein, C-terminal domain DNQ11_28670 SM00382 ATPases associated with a variety of cellular activities DNQ11_28680 SM00354 helix_turn _helix lactose operon repressor DNQ11_28715 SM00100 Cyclic nucleotide-monophosphate binding domain DNQ11_28725 SM00421 helix_turn_helix, Lux Regulon DNQ11_28725 SM00448 cheY-homologous receiver domain DNQ11_28740 SM00267 diguanylate cyclase DNQ11_28755 SM00448 cheY-homologous receiver domain DNQ11_28755 SM00850 LytTr DNA-binding domain DNQ11_28785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DNQ11_28810 SM00382 ATPases associated with a variety of cellular activities DNQ11_28875 SM00448 cheY-homologous receiver domain DNQ11_28875 SM00850 LytTr DNA-binding domain DNQ11_28880 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DNQ11_28880 SM00387 Histidine kinase-like ATPases DNQ11_28940 SM00487 DEAD-like helicases superfamily DNQ11_28940 SM00490 helicase superfamily c-terminal domain DNQ11_28950 SM01240 DNQ11_28950 DNQ11_28975 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DNQ11_28980 SM00849 Metallo-beta-lactamase superfamily DNQ11_28995 SM00091 PAS domain DNQ11_28995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DNQ11_28995 SM00387 Histidine kinase-like ATPases DNQ11_28995 SM00388 His Kinase A (phosphoacceptor) domain DNQ11_29000 SM00448 cheY-homologous receiver domain DNQ11_29000 SM00862 Transcriptional regulatory protein, C terminal DNQ11_29025 SM00788 Adenylosuccinate synthetase DNQ11_29040 SM00267 diguanylate cyclase DNQ11_29085 SM00470 ParB-like nuclease domain DNQ11_29095 SM00470 ParB-like nuclease domain DNQ11_29105 SM01228 DNQ11_29105 DNQ11_29115 SM00393 Putative single-stranded nucleic acids-binding domain DNQ11_29115 SM01245 DNQ11_29115 DNQ11_29185 SM00507 HNH nucleases DNQ11_29190 SM00487 DEAD-like helicases superfamily DNQ11_29275 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain DNQ11_29400 SM00843 DNQ11_29400 DNQ11_29415 SM00864 Tubulin/FtsZ family, GTPase domain DNQ11_29635 SM00725 NEAr Transporter domain DNQ11_29650 SM00014 Acid phosphatase homologues DNQ11_29685 SM00984 UDP binding domain DNQ11_29750 SM01207 DNQ11_29750 DNQ11_29785 SM00857 Resolvase, N terminal domain DNQ11_29815 SM00758 DNQ11_29815 DNQ11_29820 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_29910 SM00860 SMI1 / KNR4 family DNQ11_29970 SM00028 Tetratricopeptide repeats DNQ11_29980 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DNQ11_30000 SM00318 Staphylococcal nuclease homologues DNQ11_30010 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DNQ11_30010 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DNQ11_30010 SM00493 DNQ11_30010 DNQ11_30230 SM00646 DNQ11_30230 DNQ11_30285 SM00014 Acid phosphatase homologues DNQ11_30315 SM00854 Bacterial capsule synthesis protein PGA_cap DNQ11_30340 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor