locus-tag class description BF90_10 PF01510 N-acetylmuramoyl-L-alanine amidase BF90_1002 PF00012 Hsp70 protein BF90_1005 PF01037 Lrp/AsnC ligand binding domain BF90_1009 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_101 PF01497 Periplasmic binding protein BF90_1011 PF01609 Transposase DDE domain BF90_1013 PF02805 Metal binding domain of Ada BF90_1013 PF12833 Helix-turn-helix domain BF90_1015 PF00144 Beta-lactamase BF90_1018 PF12802 MarR family BF90_1019 PF00067 Cytochrome P450 BF90_1019 PF00175 Oxidoreductase NAD-binding domain BF90_1019 PF00258 Flavodoxin BF90_1019 PF00667 FAD binding domain BF90_102 PF01063 Amino-transferase class IV BF90_1020 PF07690 Major Facilitator Superfamily BF90_1025 PF00486 Transcriptional regulatory protein, C terminal BF90_1025 PF00072 Response regulator receiver domain BF90_1026 PF00672 HAMP domain BF90_1026 PF00512 His Kinase A (phospho-acceptor) domain BF90_1026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_103 PF00881 Nitroreductase family BF90_1031 PF00291 Pyridoxal-phosphate dependent enzyme BF90_1035 PF00144 Beta-lactamase BF90_1037 PF01381 Helix-turn-helix BF90_1040 PF00753 Metallo-beta-lactamase superfamily BF90_1041 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BF90_1043 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF90_1043 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF90_1044 PF04072 Leucine carboxyl methyltransferase BF90_1047 PF00005 ABC transporter BF90_1048 PF02687 FtsX-like permease family BF90_1051 PF00672 HAMP domain BF90_1051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_1051 PF00512 His Kinase A (phospho-acceptor) domain BF90_1052 PF00486 Transcriptional regulatory protein, C terminal BF90_1052 PF00072 Response regulator receiver domain BF90_1054 PF01047 MarR family BF90_1055 PF00583 Acetyltransferase (GNAT) family BF90_1056 PF04299 Putative FMN-binding domain BF90_1057 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_1057 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_1058 PF07690 Major Facilitator Superfamily BF90_1059 PF02589 LUD domain BF90_106 PF00857 Isochorismatase family BF90_1060 PF11870 Domain of unknown function (DUF3390) BF90_1060 PF13183 4Fe-4S dicluster domain BF90_1060 PF02589 LUD domain BF90_1061 PF02754 Cysteine-rich domain BF90_1062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_1062 PF03466 LysR substrate binding domain BF90_1064 PF02016 LD-carboxypeptidase N-terminal domain BF90_1064 PF17676 LD-carboxypeptidase C-terminal domain BF90_1068 PF07690 Major Facilitator Superfamily BF90_1069 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF90_1069 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF90_107 PF00293 NUDIX domain BF90_1070 PF05116 Sucrose-6F-phosphate phosphohydrolase BF90_1071 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF90_1072 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF90_1073 PF00356 Bacterial regulatory proteins, lacI family BF90_1074 PF18801 response regulator aspartate phosphatase H, N terminal BF90_1078 PF00817 impB/mucB/samB family BF90_1078 PF11799 impB/mucB/samB family C-terminal domain BF90_1078 PF11798 IMS family HHH motif BF90_108 PF00011 Hsp20/alpha crystallin family BF90_1081 PF02743 Cache domain BF90_1081 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_1081 PF00672 HAMP domain BF90_1085 PF01554 MatE BF90_1086 PF18496 Collagenase G catalytic helper subdomain BF90_1086 PF01752 Collagenase BF90_1086 PF08453 Peptidase family M9 N-terminal BF90_1087 PF01609 Transposase DDE domain BF90_1088 PF02661 Fic/DOC family BF90_1089 PF07690 Major Facilitator Superfamily BF90_109 PF00924 Mechanosensitive ion channel BF90_1090 PF16859 Tetracyclin repressor-like, C-terminal domain BF90_1090 PF00440 Bacterial regulatory proteins, tetR family BF90_1092 PF01022 Bacterial regulatory protein, arsR family BF90_1094 PF03313 Serine dehydratase alpha chain BF90_1095 PF03315 Serine dehydratase beta chain BF90_1095 PF01842 ACT domain BF90_1096 PF03315 Serine dehydratase beta chain BF90_1096 PF01842 ACT domain BF90_1097 PF00202 Aminotransferase class-III BF90_1098 PF17788 HypF Kae1-like domain BF90_1098 PF07503 HypF finger BF90_1098 PF01300 Telomere recombination BF90_1098 PF00708 Acylphosphatase BF90_1099 PF02769 AIR synthase related protein, C-terminal domain BF90_1099 PF00586 AIR synthase related protein, N-terminal domain BF90_110 PF13185 GAF domain BF90_110 PF07730 Histidine kinase BF90_1102 PF01037 Lrp/AsnC ligand binding domain BF90_1103 PF13520 Amino acid permease BF90_1106 PF01842 ACT domain BF90_1106 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF90_1106 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF90_1107 PF00266 Aminotransferase class-V BF90_111 PF00196 Bacterial regulatory proteins, luxR family BF90_111 PF00072 Response regulator receiver domain BF90_1110 PF08281 Sigma-70, region 4 BF90_1110 PF04542 Sigma-70 region 2 BF90_1113 PF07883 Cupin domain BF90_1114 PF01497 Periplasmic binding protein BF90_1114 PF12833 Helix-turn-helix domain BF90_1115 PF01804 Penicillin amidase BF90_1117 PF00395 S-layer homology domain BF90_1124 PF14044 NETI protein BF90_1125 PF07690 Major Facilitator Superfamily BF90_1126 PF12697 Alpha/beta hydrolase family BF90_1127 PF01047 MarR family BF90_1128 PF07690 Major Facilitator Superfamily BF90_113 PF01380 SIS domain BF90_113 PF01418 Helix-turn-helix domain, rpiR family BF90_1131 PF12679 ABC-2 family transporter protein BF90_1132 PF00005 ABC transporter BF90_1132 PF13732 Domain of unknown function (DUF4162) BF90_1133 PF13396 Phospholipase_D-nuclease N-terminal BF90_1135 PF17314 Family of unknown function (DUF5360) BF90_1136 PF00893 Small Multidrug Resistance protein BF90_1137 PF00440 Bacterial regulatory proteins, tetR family BF90_1138 PF01289 Thiol-activated cytolysin BF90_1138 PF17440 Thiol-activated cytolysin beta sandwich domain BF90_1139 PF02667 Short chain fatty acid transporter BF90_114 PF08240 Alcohol dehydrogenase GroES-like domain BF90_114 PF00107 Zinc-binding dehydrogenase BF90_1141 PF02525 Flavodoxin-like fold BF90_1145 PF14256 YwiC-like protein BF90_1146 PF14256 YwiC-like protein BF90_1148 PF00005 ABC transporter BF90_1149 PF02361 Cobalt transport protein BF90_1153 PF03737 Aldolase/RraA BF90_1154 PF03606 C4-dicarboxylate anaerobic carrier BF90_1155 PF04231 Endonuclease I BF90_1158 PF01381 Helix-turn-helix BF90_1159 PF02660 Glycerol-3-phosphate acyltransferase BF90_1160 PF04073 Aminoacyl-tRNA editing domain BF90_1161 PF13393 Histidyl-tRNA synthetase BF90_1161 PF03129 Anticodon binding domain BF90_1164 PF01638 HxlR-like helix-turn-helix BF90_1165 PF00881 Nitroreductase family BF90_1167 PF00391 PEP-utilising enzyme, mobile domain BF90_1167 PF02887 Pyruvate kinase, alpha/beta domain BF90_1167 PF00224 Pyruvate kinase, barrel domain BF90_117 PF00144 Beta-lactamase BF90_1171 PF00005 ABC transporter BF90_1176 PF13419 Haloacid dehalogenase-like hydrolase BF90_1181 PF13344 Haloacid dehalogenase-like hydrolase BF90_1181 PF00293 NUDIX domain BF90_1183 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_1184 PF00480 ROK family BF90_1185 PF07690 Major Facilitator Superfamily BF90_1186 PF12464 Maltose acetyltransferase BF90_1186 PF14602 Hexapeptide repeat of succinyl-transferase BF90_1188 PF00005 ABC transporter BF90_1190 PF00579 tRNA synthetases class I (W and Y) BF90_1191 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF90_1191 PF13288 DXP reductoisomerase C-terminal domain BF90_1191 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF90_1192 PF01594 AI-2E family transporter BF90_1196 PF08241 Methyltransferase domain BF90_1198 PF07690 Major Facilitator Superfamily BF90_120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF90_120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF90_1202 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_1204 PF01595 Cyclin M transmembrane N-terminal domain BF90_1204 PF03471 Transporter associated domain BF90_1204 PF00571 CBS domain BF90_1205 PF13411 MerR HTH family regulatory protein BF90_1206 PF00892 EamA-like transporter family BF90_1207 PF00805 Pentapeptide repeats (8 copies) BF90_1208 PF06906 Protein of unknown function (DUF1272) BF90_1209 PF10282 Lactonase, 7-bladed beta-propeller BF90_121 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF90_121 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF90_1210 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF90_1210 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF90_1211 PF02447 GntP family permease BF90_1212 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF90_1213 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF90_1213 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF90_1214 PF02779 Transketolase, pyrimidine binding domain BF90_1214 PF02780 Transketolase, C-terminal domain BF90_1214 PF00456 Transketolase, thiamine diphosphate binding domain BF90_1215 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF90_1215 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF90_1216 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF90_1216 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF90_1217 PF00107 Zinc-binding dehydrogenase BF90_1217 PF08240 Alcohol dehydrogenase GroES-like domain BF90_1218 PF00296 Luciferase-like monooxygenase BF90_1220 PF08240 Alcohol dehydrogenase GroES-like domain BF90_1220 PF00698 Acyl transferase domain BF90_1220 PF00107 Zinc-binding dehydrogenase BF90_1220 PF02801 Beta-ketoacyl synthase, C-terminal domain BF90_1220 PF08659 KR domain BF90_1220 PF00550 Phosphopantetheine attachment site BF90_1220 PF16197 Ketoacyl-synthetase C-terminal extension BF90_1220 PF14765 Polyketide synthase dehydratase BF90_1220 PF00109 Beta-ketoacyl synthase, N-terminal domain BF90_1221 PF00106 short chain dehydrogenase BF90_1222 PF07504 Fungalysin/Thermolysin Propeptide Motif BF90_1222 PF01447 Thermolysin metallopeptidase, catalytic domain BF90_1222 PF03413 Peptidase propeptide and YPEB domain BF90_1222 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF90_1226 PF00248 Aldo/keto reductase family BF90_1227 PF07690 Major Facilitator Superfamily BF90_1229 PF03928 Haem-degrading BF90_1230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_1236 PF03960 ArsC family BF90_1237 PF01638 HxlR-like helix-turn-helix BF90_1238 PF00392 Bacterial regulatory proteins, gntR family BF90_1238 PF07702 UTRA domain BF90_1239 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF90_1239 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF90_124 PF03358 NADPH-dependent FMN reductase BF90_1241 PF01638 HxlR-like helix-turn-helix BF90_1242 PF01638 HxlR-like helix-turn-helix BF90_1243 PF00248 Aldo/keto reductase family BF90_1249 PF02567 Phenazine biosynthesis-like protein BF90_1253 PF13193 AMP-binding enzyme C-terminal domain BF90_1253 PF00501 AMP-binding enzyme BF90_1255 PF02525 Flavodoxin-like fold BF90_1256 PF01638 HxlR-like helix-turn-helix BF90_1259 PF01022 Bacterial regulatory protein, arsR family BF90_1260 PF01522 Polysaccharide deacetylase BF90_1260 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF90_1262 PF12791 Anti-sigma factor N-terminus BF90_1263 PF04542 Sigma-70 region 2 BF90_1264 PF00535 Glycosyl transferase family 2 BF90_1264 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BF90_1266 PF00440 Bacterial regulatory proteins, tetR family BF90_127 PF00005 ABC transporter BF90_127 PF00571 CBS domain BF90_1270 PF05656 Protein of unknown function (DUF805) BF90_1271 PF01061 ABC-2 type transporter BF90_1272 PF00005 ABC transporter BF90_1272 PF13732 Domain of unknown function (DUF4162) BF90_1275 PF03063 Prismane/CO dehydrogenase family BF90_1278 PF00753 Metallo-beta-lactamase superfamily BF90_1279 PF01183 Glycosyl hydrolases family 25 BF90_1279 PF01471 Putative peptidoglycan binding domain BF90_128 PF00528 Binding-protein-dependent transport system inner membrane component BF90_1284 PF00144 Beta-lactamase BF90_129 PF13520 Amino acid permease BF90_1293 PF00753 Metallo-beta-lactamase superfamily BF90_1294 PF00107 Zinc-binding dehydrogenase BF90_1294 PF08240 Alcohol dehydrogenase GroES-like domain BF90_1295 PF00324 Amino acid permease BF90_1296 PF07690 Major Facilitator Superfamily BF90_13 PF01966 HD domain BF90_1301 PF02585 GlcNAc-PI de-N-acetylase BF90_1302 PF08830 Protein of unknown function (DUF1806) BF90_1303 PF03600 Citrate transporter BF90_1307 PF01497 Periplasmic binding protein BF90_1309 PF01032 FecCD transport family BF90_1310 PF01032 FecCD transport family BF90_1311 PF05675 Protein of unknown function (DUF817) BF90_1312 PF02567 Phenazine biosynthesis-like protein BF90_1313 PF13170 Protein of unknown function (DUF4003) BF90_1316 PF10901 Protein of unknown function (DUF2690) BF90_1318 PF03466 LysR substrate binding domain BF90_1318 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_1319 PF08240 Alcohol dehydrogenase GroES-like domain BF90_1319 PF00107 Zinc-binding dehydrogenase BF90_1322 PF01713 Smr domain BF90_1322 PF00488 MutS domain V BF90_1324 PF09154 Domain of unknown function (DUF1939) BF90_1324 PF00128 Alpha amylase, catalytic domain BF90_1325 PF00128 Alpha amylase, catalytic domain BF90_1325 PF09154 Domain of unknown function (DUF1939) BF90_1326 PF00797 N-acetyltransferase BF90_1327 PF08439 Oligopeptidase F BF90_1327 PF01432 Peptidase family M3 BF90_1328 PF00144 Beta-lactamase BF90_1331 PF07690 Major Facilitator Superfamily BF90_1332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_1332 PF03466 LysR substrate binding domain BF90_1335 PF03009 Glycerophosphoryl diester phosphodiesterase family BF90_1338 PF01494 FAD binding domain BF90_1339 PF01022 Bacterial regulatory protein, arsR family BF90_1340 PF08240 Alcohol dehydrogenase GroES-like domain BF90_1340 PF00107 Zinc-binding dehydrogenase BF90_1341 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BF90_1342 PF18801 response regulator aspartate phosphatase H, N terminal BF90_1345 PF04299 Putative FMN-binding domain BF90_1347 PF04229 GrpB protein BF90_1349 PF01758 Sodium Bile acid symporter family BF90_135 PF01595 Cyclin M transmembrane N-terminal domain BF90_135 PF00571 CBS domain BF90_135 PF03471 Transporter associated domain BF90_1350 PF02913 FAD linked oxidases, C-terminal domain BF90_1350 PF01565 FAD binding domain BF90_1354 PF00132 Bacterial transferase hexapeptide (six repeats) BF90_1355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF90_1356 PF00535 Glycosyl transferase family 2 BF90_1357 PF00378 Enoyl-CoA hydratase/isomerase BF90_1358 PF08453 Peptidase family M9 N-terminal BF90_1358 PF18496 Collagenase G catalytic helper subdomain BF90_1358 PF01752 Collagenase BF90_1359 PF02308 MgtC family BF90_136 PF00171 Aldehyde dehydrogenase family BF90_1361 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_1362 PF04294 VanW like protein BF90_1364 PF13037 Domain of unknown function (DUF3898) BF90_1364 PF13039 Protein of unknown function (DUF3900) BF90_1368 PF00313 'Cold-shock' DNA-binding domain BF90_137 PF07997 Protein of unknown function (DUF1694) BF90_1370 PF00258 Flavodoxin BF90_1372 PF00293 NUDIX domain BF90_1374 PF00132 Bacterial transferase hexapeptide (six repeats) BF90_1376 PF00106 short chain dehydrogenase BF90_1378 PF14698 Argininosuccinate lyase C-terminal BF90_1378 PF00206 Lyase BF90_138 PF09385 Histidine kinase N terminal BF90_1381 PF01156 Inosine-uridine preferring nucleoside hydrolase BF90_1382 PF00474 Sodium:solute symporter family BF90_1384 PF00171 Aldehyde dehydrogenase family BF90_1386 PF14151 YfhD-like protein BF90_1387 PF13249 Squalene-hopene cyclase N-terminal domain BF90_1387 PF13243 Squalene-hopene cyclase C-terminal domain BF90_1388 PF02681 Divergent PAP2 family BF90_1389 PF00892 EamA-like transporter family BF90_1390 PF06961 Protein of unknown function (DUF1294) BF90_1393 PF10609 NUBPL iron-transfer P-loop NTPase BF90_1395 PF02391 MoaE protein BF90_1396 PF03454 MoeA C-terminal region (domain IV) BF90_1396 PF03453 MoeA N-terminal region (domain I and II) BF90_1396 PF00994 Probable molybdopterin binding domain BF90_1397 PF00899 ThiF family BF90_1398 PF01226 Formate/nitrite transporter BF90_1399 PF06463 Molybdenum Cofactor Synthesis C BF90_1399 PF04055 Radical SAM superfamily BF90_14 PF16326 ABC transporter C-terminal domain BF90_14 PF12848 ABC transporter BF90_14 PF00005 ABC transporter BF90_140 PF00202 Aminotransferase class-III BF90_1400 PF02634 FdhD/NarQ family BF90_1401 PF10057 Uncharacterized conserved protein (DUF2294) BF90_1402 PF07849 Protein of unknown function (DUF1641) BF90_1403 PF01568 Molydopterin dinucleotide binding domain BF90_1403 PF00384 Molybdopterin oxidoreductase BF90_1403 PF00037 4Fe-4S binding domain BF90_1403 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF90_1403 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF90_1405 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_141 PF01144 Coenzyme A transferase BF90_1414 PF08241 Methyltransferase domain BF90_1415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_1416 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_1417 PF00375 Sodium:dicarboxylate symporter family BF90_1418 PF03816 Cell envelope-related transcriptional attenuator domain BF90_142 PF01144 Coenzyme A transferase BF90_1420 PF08281 Sigma-70, region 4 BF90_1420 PF04542 Sigma-70 region 2 BF90_1424 PF00005 ABC transporter BF90_1424 PF13732 Domain of unknown function (DUF4162) BF90_1426 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF90_1426 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF90_1427 PF00521 DNA gyrase/topoisomerase IV, subunit A BF90_1427 PF03989 DNA gyrase C-terminal domain, beta-propeller BF90_1428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_1428 PF00204 DNA gyrase B BF90_1428 PF01751 Toprim domain BF90_1428 PF00986 DNA gyrase B subunit, carboxyl terminus BF90_1429 PF13380 CoA binding domain BF90_143 PF07687 Peptidase dimerisation domain BF90_143 PF01546 Peptidase family M20/M25/M40 BF90_1430 PF13180 PDZ domain BF90_1431 PF00486 Transcriptional regulatory protein, C terminal BF90_1431 PF00072 Response regulator receiver domain BF90_1432 PF04055 Radical SAM superfamily BF90_1433 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF90_1433 PF03477 ATP cone domain BF90_1434 PF02660 Glycerol-3-phosphate acyltransferase BF90_1435 PF01521 Iron-sulphur cluster biosynthesis BF90_1436 PF03061 Thioesterase superfamily BF90_1437 PF01476 LysM domain BF90_1437 PF00704 Glycosyl hydrolases family 18 BF90_1439 PF08177 Small acid-soluble spore protein N family BF90_144 PF00583 Acetyltransferase (GNAT) family BF90_1440 PF13040 Fur-regulated basic protein B BF90_1441 PF02811 PHP domain BF90_1441 PF00929 Exonuclease BF90_1441 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF90_1441 PF01336 OB-fold nucleic acid binding domain BF90_1441 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF90_1441 PF11490 DNA polymerase III polC-type N-terminus II BF90_1441 PF14579 Helix-hairpin-helix motif BF90_1442 PF00578 AhpC/TSA family BF90_1444 PF00664 ABC transporter transmembrane region BF90_1444 PF00005 ABC transporter BF90_1444 PF03412 Peptidase C39 family BF90_1445 PF00694 Aconitase C-terminal domain BF90_1445 PF00330 Aconitase family (aconitate hydratase) BF90_1447 PF01522 Polysaccharide deacetylase BF90_145 PF02954 Bacterial regulatory protein, Fis family BF90_145 PF13426 PAS domain BF90_145 PF00158 Sigma-54 interaction domain BF90_1450 PF07690 Major Facilitator Superfamily BF90_1452 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF90_1452 PF01411 tRNA synthetases class II (A) BF90_1452 PF02272 DHHA1 domain BF90_1453 PF00293 NUDIX domain BF90_1453 PF13344 Haloacid dehalogenase-like hydrolase BF90_1455 PF00108 Thiolase, N-terminal domain BF90_1455 PF02803 Thiolase, C-terminal domain BF90_1456 PF13193 AMP-binding enzyme C-terminal domain BF90_1456 PF00501 AMP-binding enzyme BF90_1457 PF02632 BioY family BF90_1458 PF00501 AMP-binding enzyme BF90_1458 PF13193 AMP-binding enzyme C-terminal domain BF90_146 PF12544 Lysine-2,3-aminomutase BF90_1461 PF05532 CsbD-like BF90_1467 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_1467 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_1469 PF00512 His Kinase A (phospho-acceptor) domain BF90_1469 PF13426 PAS domain BF90_1469 PF13188 PAS domain BF90_1469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_1469 PF00989 PAS fold BF90_147 PF14122 YokU-like protein, putative antitoxin BF90_1470 PF01738 Dienelactone hydrolase family BF90_1471 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_1472 PF00474 Sodium:solute symporter family BF90_1473 PF01645 Conserved region in glutamate synthase BF90_1474 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF90_1475 PF02559 CarD-like/TRCF domain BF90_1476 PF00491 Arginase family BF90_1477 PF01979 Amidohydrolase family BF90_1478 PF01175 Urocanase Rossmann-like domain BF90_1478 PF17391 Urocanase N-terminal domain BF90_1478 PF17392 Urocanase C-terminal domain BF90_1479 PF00221 Aromatic amino acid lyase BF90_148 PF06855 YozE SAM-like fold BF90_1480 PF09021 HutP BF90_1481 PF01209 ubiE/COQ5 methyltransferase family BF90_1485 PF11084 Protein of unknown function (DUF2621) BF90_1491 PF07301 Protein of unknown function (DUF1453) BF90_1492 PF02683 Cytochrome C biogenesis protein transmembrane region BF90_1494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_1494 PF03466 LysR substrate binding domain BF90_1495 PF03788 LrgA family BF90_1496 PF04172 LrgB-like family BF90_1498 PF13344 Haloacid dehalogenase-like hydrolase BF90_1498 PF00293 NUDIX domain BF90_1500 PF01925 Sulfite exporter TauE/SafE BF90_1502 PF01510 N-acetylmuramoyl-L-alanine amidase BF90_1502 PF01471 Putative peptidoglycan binding domain BF90_1505 PF00005 ABC transporter BF90_1505 PF00664 ABC transporter transmembrane region BF90_1506 PF00005 ABC transporter BF90_1506 PF00664 ABC transporter transmembrane region BF90_1507 PF03672 Uncharacterised protein family (UPF0154) BF90_1508 PF10747 Sporulation inhibitor of replication protein SirA BF90_1509 PF02779 Transketolase, pyrimidine binding domain BF90_1509 PF00456 Transketolase, thiamine diphosphate binding domain BF90_1509 PF02780 Transketolase, C-terminal domain BF90_151 PF14162 YozD-like protein BF90_1510 PF01385 Probable transposase BF90_1510 PF07282 Putative transposase DNA-binding domain BF90_1510 PF12323 Helix-turn-helix domain BF90_1511 PF00528 Binding-protein-dependent transport system inner membrane component BF90_1512 PF00528 Binding-protein-dependent transport system inner membrane component BF90_1513 PF00005 ABC transporter BF90_1516 PF00149 Calcineurin-like phosphoesterase BF90_1516 PF02872 5'-nucleotidase, C-terminal domain BF90_1517 PF05979 Bacterial protein of unknown function (DUF896) BF90_1518 PF00239 Resolvase, N terminal domain BF90_1519 PF00717 Peptidase S24-like BF90_1519 PF01726 LexA DNA binding domain BF90_1522 PF03551 Transcriptional regulator PadR-like family BF90_1530 PF01510 N-acetylmuramoyl-L-alanine amidase BF90_1530 PF01476 LysM domain BF90_1530 PF01471 Putative peptidoglycan binding domain BF90_1531 PF05105 Bacteriophage holin family BF90_154 PF07070 SpoOM protein BF90_155 PF01545 Cation efflux family BF90_155 PF16916 Dimerisation domain of Zinc Transporter BF90_156 PF01569 PAP2 superfamily BF90_1563 PF08281 Sigma-70, region 4 BF90_157 PF00085 Thioredoxin BF90_1571 PF02511 Thymidylate synthase complementing protein BF90_1572 PF00145 C-5 cytosine-specific DNA methylase BF90_1587 PF01381 Helix-turn-helix BF90_159 PF04740 LXG domain of WXG superfamily BF90_159 PF14436 Bacterial EndoU nuclease BF90_1591 PF02899 Phage integrase, N-terminal SAM-like domain BF90_1591 PF00589 Phage integrase family BF90_1592 PF03951 Glutamine synthetase, beta-Grasp domain BF90_1592 PF00120 Glutamine synthetase, catalytic domain BF90_1593 PF13411 MerR HTH family regulatory protein BF90_1594 PF06838 Methionine gamma-lyase BF90_1595 PF16360 GTP-binding GTPase Middle Region BF90_1595 PF01926 50S ribosome-binding GTPase BF90_1595 PF13167 GTP-binding GTPase N-terminal BF90_1596 PF03458 UPF0126 domain BF90_1598 PF17866 AAA lid domain BF90_1598 PF00004 ATPase family associated with various cellular activities (AAA) BF90_160 PF03424 Carbohydrate binding domain (family 17/28) BF90_160 PF00150 Cellulase (glycosyl hydrolase family 5) BF90_160 PF00395 S-layer homology domain BF90_1601 PF17209 Hfq protein BF90_1604 PF01476 LysM domain BF90_1604 PF06725 3D domain BF90_1605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF90_1605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF90_1606 PF00294 pfkB family carbohydrate kinase BF90_1607 PF08220 DeoR-like helix-turn-helix domain BF90_1607 PF00455 DeoR C terminal sensor domain BF90_1608 PF00465 Iron-containing alcohol dehydrogenase BF90_1609 PF00465 Iron-containing alcohol dehydrogenase BF90_1610 PF04238 Protein of unknown function (DUF420) BF90_1613 PF00324 Amino acid permease BF90_1614 PF00041 Fibronectin type III domain BF90_1614 PF00704 Glycosyl hydrolases family 18 BF90_1615 PF00041 Fibronectin type III domain BF90_1615 PF00704 Glycosyl hydrolases family 18 BF90_1617 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF90_1617 PF00149 Calcineurin-like phosphoesterase BF90_1618 PF01226 Formate/nitrite transporter BF90_1619 PF00216 Bacterial DNA-binding protein BF90_162 PF04471 Restriction endonuclease BF90_1620 PF00403 Heavy-metal-associated domain BF90_1621 PF00403 Heavy-metal-associated domain BF90_1622 PF02583 Metal-sensitive transcriptional repressor BF90_1624 PF00756 Putative esterase BF90_1625 PF00005 ABC transporter BF90_1626 PF01032 FecCD transport family BF90_1627 PF01032 FecCD transport family BF90_1628 PF01497 Periplasmic binding protein BF90_1630 PF03372 Endonuclease/Exonuclease/phosphatase family BF90_1631 PF03372 Endonuclease/Exonuclease/phosphatase family BF90_1632 PF12833 Helix-turn-helix domain BF90_1632 PF02805 Metal binding domain of Ada BF90_1633 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF90_1633 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF90_1634 PF00730 HhH-GPD superfamily base excision DNA repair protein BF90_1634 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BF90_1635 PF07687 Peptidase dimerisation domain BF90_1635 PF01546 Peptidase family M20/M25/M40 BF90_1640 PF00561 alpha/beta hydrolase fold BF90_1641 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_1643 PF03707 Bacterial signalling protein N terminal repeat BF90_1643 PF00990 Diguanylate cyclase, GGDEF domain BF90_1643 PF00563 EAL domain BF90_1645 PF10787 Uncharacterised protein from bacillus cereus group BF90_1646 PF04172 LrgB-like family BF90_1647 PF03788 LrgA family BF90_1648 PF00155 Aminotransferase class I and II BF90_1648 PF00392 Bacterial regulatory proteins, gntR family BF90_1649 PF00364 Biotin-requiring enzyme BF90_1649 PF00561 alpha/beta hydrolase fold BF90_1650 PF02585 GlcNAc-PI de-N-acetylase BF90_1652 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BF90_1653 PF00082 Subtilase family BF90_1654 PF07486 Cell Wall Hydrolase BF90_1655 PF03275 UDP-galactopyranose mutase BF90_1656 PF00884 Sulfatase BF90_1657 PF00350 Dynamin family BF90_1659 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BF90_1660 PF00512 His Kinase A (phospho-acceptor) domain BF90_1660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_1661 PF00072 Response regulator receiver domain BF90_1661 PF00486 Transcriptional regulatory protein, C terminal BF90_1664 PF00005 ABC transporter BF90_1665 PF08676 MutL C terminal dimerisation domain BF90_1665 PF01119 DNA mismatch repair protein, C-terminal domain BF90_1666 PF05190 MutS family domain IV BF90_1666 PF00488 MutS domain V BF90_1666 PF05188 MutS domain II BF90_1666 PF01624 MutS domain I BF90_1666 PF05192 MutS domain III BF90_1667 PF10628 Outer spore coat protein E (CotE) BF90_1668 PF06133 Control of competence regulator ComK, YlbF/YmcA BF90_1669 PF04055 Radical SAM superfamily BF90_1669 PF01938 TRAM domain BF90_1669 PF00919 Uncharacterized protein family UPF0004 BF90_1670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF90_1671 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF90_1671 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF90_1671 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BF90_1672 PF01244 Membrane dipeptidase (Peptidase family M19) BF90_1673 PF04232 Stage V sporulation protein S (SpoVS) BF90_1674 PF13277 YmdB-like protein BF90_1675 PF12072 Domain of unknown function (DUF3552) BF90_1675 PF00013 KH domain BF90_1675 PF01966 HD domain BF90_1676 PF00154 recA bacterial DNA recombination protein BF90_1677 PF00154 recA bacterial DNA recombination protein BF90_1678 PF18146 Damage-inducible protein CinA KH domain BF90_1678 PF00994 Probable molybdopterin binding domain BF90_1678 PF02464 Competence-damaged protein BF90_1679 PF01066 CDP-alcohol phosphatidyltransferase BF90_1680 PF13464 Domain of unknown function (DUF4115) BF90_1681 PF11868 Protein of unknown function (DUF3388) BF90_1682 PF11588 Protein of unknown function (DUF3243) BF90_1684 PF05193 Peptidase M16 inactive domain BF90_1684 PF00675 Insulinase (Peptidase family M16) BF90_1685 PF05193 Peptidase M16 inactive domain BF90_1691 PF07702 UTRA domain BF90_1691 PF00392 Bacterial regulatory proteins, gntR family BF90_1692 PF09397 Ftsk gamma domain BF90_1692 PF01580 FtsK/SpoIIIE family BF90_1692 PF17854 FtsK alpha domain BF90_1693 PF14035 YlzJ-like protein BF90_1694 PF00574 Clp protease BF90_1695 PF17770 Ribonuclease J C-terminal domain BF90_1695 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF90_1695 PF00753 Metallo-beta-lactamase superfamily BF90_1696 PF00701 Dihydrodipicolinate synthetase family BF90_1697 PF13840 ACT domain BF90_1697 PF00696 Amino acid kinase family BF90_1698 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF90_1698 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF90_1699 PF02441 Flavoprotein BF90_17 PF00436 Single-strand binding protein family BF90_1700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF90_1700 PF16924 Dipicolinate synthase subunit A N-terminal domain BF90_1701 PF05239 PRC-barrel domain BF90_1702 PF00675 Insulinase (Peptidase family M16) BF90_1702 PF05193 Peptidase M16 inactive domain BF90_1703 PF01522 Polysaccharide deacetylase BF90_1704 PF00575 S1 RNA binding domain BF90_1704 PF03725 3' exoribonuclease family, domain 2 BF90_1704 PF01138 3' exoribonuclease family, domain 1 BF90_1704 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF90_1704 PF00013 KH domain BF90_1705 PF00312 Ribosomal protein S15 BF90_1706 PF06574 FAD synthetase BF90_1706 PF01687 Riboflavin kinase BF90_1707 PF16198 tRNA pseudouridylate synthase B C-terminal domain BF90_1707 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF90_1708 PF02033 Ribosome-binding factor A BF90_1709 PF04456 Protein of unknown function (DUF503) BF90_1710 PF04760 Translation initiation factor IF-2, N-terminal region BF90_1710 PF00009 Elongation factor Tu GTP binding domain BF90_1710 PF11987 Translation-initiation factor 2 BF90_1711 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF90_1712 PF04296 Protein of unknown function (DUF448) BF90_1713 PF00575 S1 RNA binding domain BF90_1713 PF13184 NusA-like KH domain BF90_1713 PF08529 NusA N-terminal domain BF90_1714 PF02576 RimP N-terminal domain BF90_1714 PF17384 RimP C-terminal SH3 domain BF90_1715 PF14480 DNA polymerase III polC-type N-terminus I BF90_1715 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF90_1715 PF11490 DNA polymerase III polC-type N-terminus II BF90_1715 PF02811 PHP domain BF90_1715 PF00929 Exonuclease BF90_1715 PF14579 Helix-hairpin-helix motif BF90_1715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF90_1716 PF04073 Aminoacyl-tRNA editing domain BF90_1716 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF90_1716 PF03129 Anticodon binding domain BF90_1717 PF02163 Peptidase family M50 BF90_1717 PF17820 PDZ domain BF90_1718 PF13288 DXP reductoisomerase C-terminal domain BF90_1718 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF90_1718 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF90_1720 PF01255 Putative undecaprenyl diphosphate synthase BF90_1721 PF01765 Ribosome recycling factor BF90_1722 PF00696 Amino acid kinase family BF90_1723 PF00889 Elongation factor TS BF90_1724 PF00318 Ribosomal protein S2 BF90_1725 PF08222 CodY helix-turn-helix domain BF90_1725 PF06018 CodY GAF-like domain BF90_1726 PF07724 AAA domain (Cdc48 subfamily) BF90_1726 PF00004 ATPase family associated with various cellular activities (AAA) BF90_1726 PF10431 C-terminal, D2-small domain, of ClpB protein BF90_1727 PF00227 Proteasome subunit BF90_1728 PF02899 Phage integrase, N-terminal SAM-like domain BF90_1728 PF00589 Phage integrase family BF90_1729 PF01134 Glucose inhibited division protein A BF90_1730 PF01751 Toprim domain BF90_1730 PF01131 DNA topoisomerase BF90_1730 PF01396 Topoisomerase DNA binding C4 zinc finger BF90_1732 PF00549 CoA-ligase BF90_1732 PF02629 CoA binding domain BF90_1733 PF00549 CoA-ligase BF90_1733 PF08442 ATP-grasp domain BF90_1734 PF01351 Ribonuclease HII BF90_1735 PF01926 50S ribosome-binding GTPase BF90_1736 PF10502 Signal peptidase, peptidase S26 BF90_1737 PF01245 Ribosomal protein L19 BF90_1738 PF01746 tRNA (Guanine-1)-methyltransferase BF90_1739 PF01782 RimM N-terminal domain BF90_1739 PF05239 PRC-barrel domain BF90_1741 PF00886 Ribosomal protein S16 BF90_1742 PF02978 Signal peptide binding domain BF90_1742 PF00448 SRP54-type protein, GTPase domain BF90_1742 PF02881 SRP54-type protein, helical bundle domain BF90_1743 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BF90_1744 PF00448 SRP54-type protein, GTPase domain BF90_1744 PF02881 SRP54-type protein, helical bundle domain BF90_1745 PF02463 RecF/RecN/SMC N terminal domain BF90_1745 PF06470 SMC proteins Flexible Hinge Domain BF90_1746 PF00035 Double-stranded RNA binding motif BF90_1746 PF14622 Ribonuclease-III-like BF90_1747 PF00550 Phosphopantetheine attachment site BF90_1749 PF00698 Acyl transferase domain BF90_1750 PF02504 Fatty acid synthesis protein BF90_1751 PF03061 Thioesterase superfamily BF90_1752 PF17191 RecG wedge domain BF90_1752 PF00270 DEAD/DEAH box helicase BF90_1752 PF00271 Helicase conserved C-terminal domain BF90_1753 PF13684 Dihydroxyacetone kinase family BF90_1753 PF02734 DAK2 domain BF90_1754 PF03780 Asp23 family, cell envelope-related function BF90_1755 PF00830 Ribosomal L28 family BF90_1756 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BF90_1756 PF04263 Thiamin pyrophosphokinase, catalytic domain BF90_1757 PF00834 Ribulose-phosphate 3 epimerase family BF90_1758 PF16745 RsgA N-terminal domain BF90_1758 PF03193 RsgA GTPase BF90_1759 PF00069 Protein kinase domain BF90_1759 PF03793 PASTA domain BF90_1761 PF04055 Radical SAM superfamily BF90_1762 PF01029 NusB family BF90_1762 PF01189 16S rRNA methyltransferase RsmB/F BF90_1763 PF02911 Formyl transferase, C-terminal domain BF90_1763 PF00551 Formyl transferase BF90_1764 PF01327 Polypeptide deformylase BF90_1765 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BF90_1765 PF04851 Type III restriction enzyme, res subunit BF90_1765 PF00271 Helicase conserved C-terminal domain BF90_1765 PF18074 Primosomal protein N C-terminal domain BF90_1765 PF17764 3′ DNA-binding domain (3′BD) BF90_1766 PF02441 Flavoprotein BF90_1766 PF04127 DNA / pantothenate metabolism flavoprotein BF90_1767 PF01192 RNA polymerase Rpb6 BF90_1768 PF00625 Guanylate kinase BF90_1769 PF04025 Domain of unknown function (DUF370) BF90_1770 PF03755 YicC-like family, N-terminal region BF90_1770 PF08340 Domain of unknown function (DUF1732) BF90_1771 PF00690 Cation transporter/ATPase, N-terminus BF90_1771 PF00689 Cation transporting ATPase, C-terminus BF90_1773 PF01321 Creatinase/Prolidase N-terminal domain BF90_1773 PF00557 Metallopeptidase family M24 BF90_1779 PF00156 Phosphoribosyl transferase domain BF90_1780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF90_1781 PF01180 Dihydroorotate dehydrogenase BF90_1782 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF90_1782 PF00175 Oxidoreductase NAD-binding domain BF90_1783 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF90_1783 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF90_1783 PF02142 MGS-like domain BF90_1784 PF00117 Glutamine amidotransferase class-I BF90_1784 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF90_1785 PF01979 Amidohydrolase family BF90_1786 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF90_1786 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF90_1787 PF00860 Permease family BF90_1788 PF00156 Phosphoribosyl transferase domain BF90_1789 PF01479 S4 domain BF90_1789 PF00849 RNA pseudouridylate synthase BF90_1790 PF01252 Signal peptidase (SPase) II BF90_1792 PF00133 tRNA synthetases class I (I, L, M and V) BF90_1792 PF08264 Anticodon-binding domain of tRNA BF90_1792 PF06827 Zinc finger found in FPG and IleRS BF90_1793 PF05103 DivIVA protein BF90_1794 PF01479 S4 domain BF90_1794 PF17774 Putative RNA-binding domain in YlmH BF90_1795 PF02325 YGGT family BF90_1796 PF04472 Cell division protein SepF BF90_1797 PF01168 Alanine racemase, N-terminal domain BF90_1799 PF05239 PRC-barrel domain BF90_18 PF00440 Bacterial regulatory proteins, tetR family BF90_1800 PF04539 Sigma-70 region 3 BF90_1800 PF04542 Sigma-70 region 2 BF90_1800 PF04545 Sigma-70, region 4 BF90_1801 PF04542 Sigma-70 region 2 BF90_1801 PF04545 Sigma-70, region 4 BF90_1802 PF03419 Sporulation factor SpoIIGA BF90_1803 PF12327 FtsZ family, C-terminal domain BF90_1803 PF00091 Tubulin/FtsZ family, GTPase domain BF90_1804 PF02491 SHS2 domain inserted in FTSA BF90_1805 PF08478 POTRA domain, FtsQ-type BF90_1805 PF03799 Cell division protein FtsQ BF90_1806 PF01565 FAD binding domain BF90_1806 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF90_1807 PF03033 Glycosyltransferase family 28 N-terminal domain BF90_1807 PF04101 Glycosyltransferase family 28 C-terminal domain BF90_1808 PF01098 Cell cycle protein BF90_1809 PF08245 Mur ligase middle domain BF90_1809 PF02875 Mur ligase family, glutamate ligase domain BF90_1810 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BF90_1810 PF00953 Glycosyl transferase family 4 BF90_1811 PF08245 Mur ligase middle domain BF90_1811 PF02875 Mur ligase family, glutamate ligase domain BF90_1811 PF01225 Mur ligase family, catalytic domain BF90_1812 PF03793 PASTA domain BF90_1812 PF03717 Penicillin-binding Protein dimerisation domain BF90_1812 PF00905 Penicillin binding protein transpeptidase domain BF90_1814 PF04977 Septum formation initiator BF90_1815 PF01795 MraW methylase family BF90_1816 PF10079 Bacillithiol biosynthesis BshC BF90_1817 PF02558 Ketopantoate reductase PanE/ApbA BF90_1817 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF90_1818 PF00583 Acetyltransferase (GNAT) family BF90_182 PF10676 Spore germination protein gerPA/gerPF BF90_1820 PF01783 Ribosomal L32p protein family BF90_1821 PF02620 Large ribosomal RNA subunit accumulation protein YceD BF90_1830 PF12123 N-acetylmuramoyl-l-alanine amidase BF90_1830 PF01510 N-acetylmuramoyl-L-alanine amidase BF90_1831 PF05105 Bacteriophage holin family BF90_1849 PF00574 Clp protease BF90_1851 PF03354 Phage Terminase BF90_1855 PF10137 Predicted nucleotide-binding protein containing TIR-like domain BF90_1856 PF00589 Phage integrase family BF90_186 PF00905 Penicillin binding protein transpeptidase domain BF90_186 PF00912 Transglycosylase BF90_1866 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_187 PF07690 Major Facilitator Superfamily BF90_1871 PF04542 Sigma-70 region 2 BF90_1871 PF04539 Sigma-70 region 3 BF90_1871 PF04545 Sigma-70, region 4 BF90_1876 PF01695 IstB-like ATP binding protein BF90_1876 PF07319 Primosomal protein DnaI N-terminus BF90_188 PF01521 Iron-sulphur cluster biosynthesis BF90_1881 PF01381 Helix-turn-helix BF90_1885 PF01381 Helix-turn-helix BF90_1889 PF14659 Phage integrase, N-terminal SAM-like domain BF90_1889 PF00589 Phage integrase family BF90_189 PF00285 Citrate synthase, C-terminal domain BF90_1890 PF05636 HIGH Nucleotidyl Transferase BF90_1891 PF05362 Lon protease (S16) C-terminal proteolytic domain BF90_1891 PF13180 PDZ domain BF90_1892 PF01734 Patatin-like phospholipase BF90_1893 PF01467 Cytidylyltransferase-like BF90_1894 PF07670 Nucleoside recognition BF90_1898 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BF90_1899 PF06133 Control of competence regulator ComK, YlbF/YmcA BF90_19 PF01494 FAD binding domain BF90_190 PF03972 MmgE/PrpD family BF90_1900 PF00300 Histidine phosphatase superfamily (branch 1) BF90_1901 PF14003 YlbE-like protein BF90_1902 PF14071 Putative coat protein BF90_1903 PF14504 CAP-associated N-terminal BF90_1903 PF00188 Cysteine-rich secretory protein family BF90_1904 PF08868 YugN-like family BF90_1905 PF00795 Carbon-nitrogen hydrolase BF90_1906 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BF90_1907 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BF90_1908 PF00510 Cytochrome c oxidase subunit III BF90_1909 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF90_1910 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF90_1910 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BF90_1910 PF00034 Cytochrome c BF90_1911 PF01040 UbiA prenyltransferase family BF90_1912 PF02628 Cytochrome oxidase assembly protein BF90_1913 PF00289 Biotin carboxylase, N-terminal domain BF90_1913 PF00364 Biotin-requiring enzyme BF90_1913 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF90_1913 PF02785 Biotin carboxylase C-terminal domain BF90_1913 PF00682 HMGL-like BF90_1913 PF02436 Conserved carboxylase domain BF90_1914 PF01098 Cell cycle protein BF90_1915 PF07408 Protein of unknown function (DUF1507) BF90_1917 PF02562 PhoH-like protein BF90_1917 PF13638 PIN domain BF90_1919 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BF90_192 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF90_192 PF02770 Acyl-CoA dehydrogenase, middle domain BF90_192 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF90_1921 PF14036 YlaH-like protein BF90_1924 PF00459 Inositol monophosphatase family BF90_1926 PF06335 Protein of unknown function (DUF1054) BF90_1927 PF05256 Uncharacterised protein family (UPF0223) BF90_1928 PF01276 Orn/Lys/Arg decarboxylase, major domain BF90_1928 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF90_193 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF90_193 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF90_1936 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_1936 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF90_1937 PF02817 e3 binding domain BF90_1937 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF90_1937 PF00364 Biotin-requiring enzyme BF90_1938 PF02779 Transketolase, pyrimidine binding domain BF90_1938 PF02780 Transketolase, C-terminal domain BF90_1939 PF00676 Dehydrogenase E1 component BF90_194 PF00171 Aldehyde dehydrogenase family BF90_1941 PF01327 Polypeptide deformylase BF90_1944 PF17770 Ribonuclease J C-terminal domain BF90_1944 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF90_1944 PF00753 Metallo-beta-lactamase superfamily BF90_1945 PF02080 TrkA-C domain BF90_1945 PF02254 TrkA-N domain BF90_1947 PF01546 Peptidase family M20/M25/M40 BF90_1947 PF07687 Peptidase dimerisation domain BF90_1948 PF00132 Bacterial transferase hexapeptide (six repeats) BF90_1948 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BF90_1948 PF14602 Hexapeptide repeat of succinyl-transferase BF90_1949 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_1949 PF03466 LysR substrate binding domain BF90_195 PF01810 LysE type translocator BF90_1952 PF04308 Ribonuclease H-like BF90_1954 PF08796 Protein of unknown function (DUF1797) BF90_1957 PF10388 EAL-domain associated signalling protein domain BF90_1957 PF00563 EAL domain BF90_1959 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF90_1959 PF00149 Calcineurin-like phosphoesterase BF90_196 PF00378 Enoyl-CoA hydratase/isomerase BF90_1961 PF13089 Polyphosphate kinase N-terminal domain BF90_1961 PF17941 Polyphosphate kinase C-terminal domain 1 BF90_1961 PF13090 Polyphosphate kinase C-terminal domain 2 BF90_1961 PF02503 Polyphosphate kinase middle domain BF90_1962 PF17941 Polyphosphate kinase C-terminal domain 1 BF90_1962 PF02503 Polyphosphate kinase middle domain BF90_1962 PF13090 Polyphosphate kinase C-terminal domain 2 BF90_1962 PF13089 Polyphosphate kinase N-terminal domain BF90_1963 PF02541 Ppx/GppA phosphatase family BF90_1964 PF14177 YkyB-like protein BF90_1969 PF07690 Major Facilitator Superfamily BF90_1971 PF01717 Cobalamin-independent synthase, Catalytic domain BF90_1971 PF08267 Cobalamin-independent synthase, N-terminal domain BF90_1973 PF14040 Deoxyribonuclease NucA/NucB BF90_1975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_1975 PF00512 His Kinase A (phospho-acceptor) domain BF90_1977 PF00155 Aminotransferase class I and II BF90_1978 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF90_1978 PF00356 Bacterial regulatory proteins, lacI family BF90_1979 PF00528 Binding-protein-dependent transport system inner membrane component BF90_198 PF10763 Protein of unknown function (DUF2584) BF90_1980 PF00528 Binding-protein-dependent transport system inner membrane component BF90_1981 PF13416 Bacterial extracellular solute-binding protein BF90_1982 PF16657 Maltogenic Amylase, C-terminal domain BF90_1982 PF02903 Alpha amylase, N-terminal ig-like domain BF90_1982 PF00128 Alpha amylase, catalytic domain BF90_1983 PF00128 Alpha amylase, catalytic domain BF90_1983 PF16657 Maltogenic Amylase, C-terminal domain BF90_1984 PF17912 MalK OB fold domain BF90_1984 PF00005 ABC transporter BF90_1984 PF03459 TOBE domain BF90_199 PF12320 Type 5 capsule protein repressor C-terminal domain BF90_199 PF00149 Calcineurin-like phosphoesterase BF90_1992 PF00108 Thiolase, N-terminal domain BF90_1992 PF02803 Thiolase, C-terminal domain BF90_1993 PF00293 NUDIX domain BF90_1999 PF03551 Transcriptional regulator PadR-like family BF90_20 PF01494 FAD binding domain BF90_200 PF13476 AAA domain BF90_2003 PF01636 Phosphotransferase enzyme family BF90_2004 PF00795 Carbon-nitrogen hydrolase BF90_2005 PF00155 Aminotransferase class I and II BF90_2006 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BF90_2006 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BF90_2008 PF00596 Class II Aldolase and Adducin N-terminal domain BF90_2009 PF03079 ARD/ARD' family BF90_2012 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF90_2012 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF90_2013 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF90_2013 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF90_2014 PF00990 Diguanylate cyclase, GGDEF domain BF90_2015 PF00881 Nitroreductase family BF90_2018 PF05524 PEP-utilising enzyme, N-terminal BF90_2018 PF00391 PEP-utilising enzyme, mobile domain BF90_2018 PF02896 PEP-utilising enzyme, TIM barrel domain BF90_2019 PF00381 PTS HPr component phosphorylation site BF90_202 PF01022 Bacterial regulatory protein, arsR family BF90_2020 PF02378 Phosphotransferase system, EIIC BF90_2020 PF00367 phosphotransferase system, EIIB BF90_2020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF90_2021 PF03123 CAT RNA binding domain BF90_2021 PF00874 PRD domain BF90_2024 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF90_2025 PF01979 Amidohydrolase family BF90_2027 PF04079 Segregation and condensation complex subunit ScpB BF90_2028 PF02616 Segregation and condensation protein ScpA BF90_2030 PF03745 Domain of unknown function (DUF309) BF90_2031 PF00583 Acetyltransferase (GNAT) family BF90_2032 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF90_2033 PF06207 Protein of unknown function (DUF1002) BF90_2035 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_2036 PF14097 Stage V sporulation protein AE1 BF90_2037 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF90_2038 PF07451 Stage V sporulation protein AD (SpoVAD) BF90_2039 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF90_204 PF07690 Major Facilitator Superfamily BF90_2040 PF13782 Stage V sporulation protein AB BF90_2041 PF12164 Stage V sporulation protein AA BF90_2043 PF00209 Sodium:neurotransmitter symporter family BF90_2044 PF04542 Sigma-70 region 2 BF90_2044 PF04545 Sigma-70, region 4 BF90_2044 PF04539 Sigma-70 region 3 BF90_2045 PF13581 Histidine kinase-like ATPase domain BF90_2046 PF01740 STAS domain BF90_2047 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_2047 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_2048 PF00392 Bacterial regulatory proteins, gntR family BF90_2049 PF00005 ABC transporter BF90_205 PF00106 short chain dehydrogenase BF90_2052 PF01047 MarR family BF90_2054 PF00860 Permease family BF90_2055 PF01544 CorA-like Mg2+ transporter protein BF90_2056 PF00591 Glycosyl transferase family, a/b domain BF90_2056 PF02885 Glycosyl transferase family, helical bundle domain BF90_2056 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF90_2057 PF01048 Phosphorylase superfamily BF90_2058 PF01676 Metalloenzyme superfamily BF90_206 PF00425 chorismate binding enzyme BF90_2060 PF02899 Phage integrase, N-terminal SAM-like domain BF90_2060 PF00589 Phage integrase family BF90_2061 PF14004 Protein of unknown function (DUF4227) BF90_2062 PF01475 Ferric uptake regulator family BF90_2063 PF01944 Stage II sporulation protein M BF90_2065 PF00293 NUDIX domain BF90_2066 PF13072 Mother cell inhibitor of FtsZ BF90_2067 PF00248 Aldo/keto reductase family BF90_2068 PF00248 Aldo/keto reductase family BF90_2069 PF13673 Acetyltransferase (GNAT) domain BF90_2069 PF04229 GrpB protein BF90_207 PF00501 AMP-binding enzyme BF90_207 PF13193 AMP-binding enzyme C-terminal domain BF90_2071 PF00149 Calcineurin-like phosphoesterase BF90_2071 PF02872 5'-nucleotidase, C-terminal domain BF90_2071 PF00746 LPXTG cell wall anchor motif BF90_2071 PF00565 Staphylococcal nuclease homologue BF90_2073 PF12146 Serine aminopeptidase, S33 BF90_2074 PF03553 Na+/H+ antiporter family BF90_2074 PF13726 Na+-H+ antiporter family BF90_2075 PF00356 Bacterial regulatory proteins, lacI family BF90_2076 PF00583 Acetyltransferase (GNAT) family BF90_2077 PF12146 Serine aminopeptidase, S33 BF90_2078 PF10827 Protein of unknown function (DUF2552) BF90_208 PF00550 Phosphopantetheine attachment site BF90_208 PF00857 Isochorismatase family BF90_2080 PF01872 RibD C-terminal domain BF90_2080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF90_2081 PF00677 Lumazine binding domain BF90_2082 PF00925 GTP cyclohydrolase II BF90_2082 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BF90_2084 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF90_2085 PF04055 Radical SAM superfamily BF90_2085 PF06968 Biotin and Thiamin Synthesis associated domain BF90_2086 PF13847 Methyltransferase domain BF90_2087 PF12697 Alpha/beta hydrolase family BF90_2087 PF08241 Methyltransferase domain BF90_2088 PF00155 Aminotransferase class I and II BF90_209 PF00550 Phosphopantetheine attachment site BF90_209 PF00668 Condensation domain BF90_209 PF00501 AMP-binding enzyme BF90_209 PF00975 Thioesterase domain BF90_209 PF13193 AMP-binding enzyme C-terminal domain BF90_2090 PF00202 Aminotransferase class-III BF90_2093 PF00149 Calcineurin-like phosphoesterase BF90_2093 PF02872 5'-nucleotidase, C-terminal domain BF90_2095 PF01037 Lrp/AsnC ligand binding domain BF90_2095 PF13404 AsnC-type helix-turn-helix domain BF90_2098 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF90_2098 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF90_2099 PF00202 Aminotransferase class-III BF90_21 PF13769 Virulence factor BF90_21 PF08712 Scaffold protein Nfu/NifU N terminal BF90_210 PF00975 Thioesterase domain BF90_210 PF00550 Phosphopantetheine attachment site BF90_210 PF00668 Condensation domain BF90_210 PF13193 AMP-binding enzyme C-terminal domain BF90_210 PF00501 AMP-binding enzyme BF90_2100 PF00696 Amino acid kinase family BF90_2101 PF01960 ArgJ family BF90_2102 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF90_2102 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF90_2104 PF00106 short chain dehydrogenase BF90_2105 PF00753 Metallo-beta-lactamase superfamily BF90_2106 PF03807 NADP oxidoreductase coenzyme F420-dependent BF90_2106 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF90_2107 PF03313 Serine dehydratase alpha chain BF90_2108 PF01842 ACT domain BF90_2108 PF03315 Serine dehydratase beta chain BF90_2109 PF00753 Metallo-beta-lactamase superfamily BF90_2109 PF12706 Beta-lactamase superfamily domain BF90_211 PF03621 MbtH-like protein BF90_2111 PF11799 impB/mucB/samB family C-terminal domain BF90_2111 PF00817 impB/mucB/samB family BF90_2111 PF11798 IMS family HHH motif BF90_2113 PF01546 Peptidase family M20/M25/M40 BF90_2113 PF07687 Peptidase dimerisation domain BF90_2114 PF13302 Acetyltransferase (GNAT) domain BF90_2116 PF03734 L,D-transpeptidase catalytic domain BF90_2117 PF06081 Aromatic acid exporter family member 1 BF90_2117 PF11728 Putative aromatic acid exporter C-terminal domain BF90_2118 PF00005 ABC transporter BF90_2119 PF00528 Binding-protein-dependent transport system inner membrane component BF90_212 PF07690 Major Facilitator Superfamily BF90_2120 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF90_2121 PF06491 Disulphide isomerase BF90_2122 PF11208 Protein of unknown function (DUF2992) BF90_2123 PF00293 NUDIX domain BF90_2123 PF09297 NADH pyrophosphatase zinc ribbon domain BF90_2124 PF01098 Cell cycle protein BF90_2125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF90_2125 PF00364 Biotin-requiring enzyme BF90_2125 PF02817 e3 binding domain BF90_2126 PF02780 Transketolase, C-terminal domain BF90_2126 PF02779 Transketolase, pyrimidine binding domain BF90_2127 PF00676 Dehydrogenase E1 component BF90_2128 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_2128 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF90_2129 PF00871 Acetokinase family BF90_2130 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF90_2130 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF90_2131 PF01515 Phosphate acetyl/butaryl transferase BF90_2132 PF00989 PAS fold BF90_2132 PF02954 Bacterial regulatory protein, Fis family BF90_2132 PF00158 Sigma-54 interaction domain BF90_2134 PF03009 Glycerophosphoryl diester phosphodiesterase family BF90_2135 PF14174 YycC-like protein BF90_2137 PF00072 Response regulator receiver domain BF90_2137 PF08769 Sporulation initiation factor Spo0A C terminal BF90_2138 PF05580 SpoIVB peptidase S55 BF90_2138 PF17820 PDZ domain BF90_2139 PF13476 AAA domain BF90_2140 PF02863 Arginine repressor, C-terminal domain BF90_2140 PF01316 Arginine repressor, DNA binding domain BF90_2141 PF01728 FtsJ-like methyltransferase BF90_2141 PF01479 S4 domain BF90_2142 PF02779 Transketolase, pyrimidine binding domain BF90_2142 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF90_2142 PF02780 Transketolase, C-terminal domain BF90_2143 PF00348 Polyprenyl synthetase BF90_2144 PF02609 Exonuclease VII small subunit BF90_2145 PF02601 Exonuclease VII, large subunit BF90_2145 PF13742 OB-fold nucleic acid binding domain BF90_2146 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF90_2146 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF90_2147 PF01029 NusB family BF90_2148 PF03780 Asp23 family, cell envelope-related function BF90_2149 PF00289 Biotin carboxylase, N-terminal domain BF90_2149 PF02785 Biotin carboxylase C-terminal domain BF90_2149 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF90_215 PF00216 Bacterial DNA-binding protein BF90_2150 PF00364 Biotin-requiring enzyme BF90_2152 PF12685 SpoIIIAH-like protein BF90_2154 PF09581 Stage III sporulation protein AF (Spore_III_AF) BF90_2155 PF09546 Stage III sporulation protein AE (spore_III_AE) BF90_2156 PF06686 Stage III sporulation protein AC/AD protein family BF90_2157 PF06686 Stage III sporulation protein AC/AD protein family BF90_2158 PF09548 Stage III sporulation protein AB (spore_III_AB) BF90_2163 PF08207 Elongation factor P (EF-P) KOW-like domain BF90_2163 PF01132 Elongation factor P (EF-P) OB domain BF90_2163 PF09285 Elongation factor P, C-terminal BF90_2164 PF00557 Metallopeptidase family M24 BF90_2164 PF01321 Creatinase/Prolidase N-terminal domain BF90_2165 PF01220 Dehydroquinase class II BF90_2166 PF11085 Conserved membrane protein YqhR BF90_2167 PF07136 Protein of unknown function (DUF1385) BF90_2168 PF13419 Haloacid dehalogenase-like hydrolase BF90_217 PF05163 DinB family BF90_2170 PF02742 Iron dependent repressor, metal binding and dimerisation domain BF90_2170 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF90_2173 PF03099 Biotin/lipoate A/B protein ligase family BF90_2174 PF00581 Rhodanese-like domain BF90_2175 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF90_2175 PF00356 Bacterial regulatory proteins, lacI family BF90_2177 PF00893 Small Multidrug Resistance protein BF90_2178 PF00893 Small Multidrug Resistance protein BF90_218 PF00082 Subtilase family BF90_2185 PF00005 ABC transporter BF90_2186 PF00392 Bacterial regulatory proteins, gntR family BF90_2189 PF02347 Glycine cleavage system P-protein BF90_219 PF01235 Sodium:alanine symporter family BF90_2190 PF02347 Glycine cleavage system P-protein BF90_2191 PF01571 Aminomethyltransferase folate-binding domain BF90_2191 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF90_2192 PF00176 SNF2 family N-terminal domain BF90_2192 PF00271 Helicase conserved C-terminal domain BF90_2193 PF11079 Bacterial protein YqhG of unknown function BF90_2197 PF14038 YqzE-like protein BF90_2198 PF01202 Shikimate kinase BF90_220 PF01235 Sodium:alanine symporter family BF90_2203 PF07963 Prokaryotic N-terminal methylation motif BF90_2205 PF00482 Type II secretion system (T2SS), protein F BF90_2206 PF00437 Type II/IV secretion system protein BF90_2208 PF11117 Protein of unknown function (DUF2626) BF90_2209 PF00375 Sodium:dicarboxylate symporter family BF90_2216 PF03033 Glycosyltransferase family 28 N-terminal domain BF90_2216 PF04101 Glycosyltransferase family 28 C-terminal domain BF90_2217 PF02607 B12 binding domain BF90_2217 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF90_2217 PF02310 B12 binding domain BF90_2217 PF00809 Pterin binding enzyme BF90_2217 PF02574 Homocysteine S-methyltransferase BF90_2218 PF02310 B12 binding domain BF90_2218 PF00809 Pterin binding enzyme BF90_2218 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF90_2218 PF02607 B12 binding domain BF90_2218 PF02574 Homocysteine S-methyltransferase BF90_2219 PF02574 Homocysteine S-methyltransferase BF90_2219 PF02219 Methylenetetrahydrofolate reductase BF90_2220 PF01053 Cys/Met metabolism PLP-dependent enzyme BF90_2221 PF01053 Cys/Met metabolism PLP-dependent enzyme BF90_2223 PF01022 Bacterial regulatory protein, arsR family BF90_2225 PF00753 Metallo-beta-lactamase superfamily BF90_2226 PF10958 Protein of unknown function (DUF2759) BF90_2227 PF00480 ROK family BF90_2228 PF06014 Bacterial protein of unknown function (DUF910) BF90_2229 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF90_223 PF16291 Domain of unknown function (DUF4937 BF90_2230 PF00471 Ribosomal protein L33 BF90_2231 PF00483 Nucleotidyl transferase BF90_2232 PF01895 PhoU domain BF90_2233 PF00005 ABC transporter BF90_2234 PF00528 Binding-protein-dependent transport system inner membrane component BF90_2235 PF00528 Binding-protein-dependent transport system inner membrane component BF90_2236 PF12849 PBP superfamily domain BF90_2238 PF07690 Major Facilitator Superfamily BF90_2239 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF90_2239 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF90_224 PF00849 RNA pseudouridylate synthase BF90_224 PF01479 S4 domain BF90_2243 PF04551 GcpE protein BF90_2244 PF01475 Ferric uptake regulator family BF90_2245 PF00950 ABC 3 transport family BF90_2246 PF00005 ABC transporter BF90_2247 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_2247 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_2248 PF11116 Protein of unknown function (DUF2624) BF90_2249 PF01261 Xylose isomerase-like TIM barrel BF90_225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF90_225 PF03129 Anticodon binding domain BF90_225 PF02824 TGS domain BF90_225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF90_2250 PF00270 DEAD/DEAH box helicase BF90_2250 PF00271 Helicase conserved C-terminal domain BF90_2252 PF02401 LytB protein BF90_2253 PF01784 NIF3 (NGG1p interacting factor 3) BF90_2254 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BF90_2255 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF90_2256 PF00140 Sigma-70 factor, region 1.2 BF90_2256 PF04539 Sigma-70 region 3 BF90_2256 PF04542 Sigma-70 region 2 BF90_2256 PF03979 Sigma-70 factor, region 1.1 BF90_2256 PF04545 Sigma-70, region 4 BF90_2257 PF08275 DNA primase catalytic core, N-terminal domain BF90_2257 PF01807 CHC2 zinc finger BF90_2257 PF10410 DnaB-helicase binding domain of primase BF90_2258 PF03618 Kinase/pyrophosphorylase BF90_2259 PF00571 CBS domain BF90_2259 PF08279 HTH domain BF90_226 PF00005 ABC transporter BF90_2260 PF02565 Recombination protein O C terminal BF90_2260 PF11967 Recombination protein O N terminal BF90_2262 PF07650 KH domain BF90_2262 PF01926 50S ribosome-binding GTPase BF90_2263 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF90_2264 PF01219 Prokaryotic diacylglycerol kinase BF90_2265 PF02130 Uncharacterized protein family UPF0054 BF90_2266 PF01966 HD domain BF90_2266 PF07697 7TM-HD extracellular BF90_2266 PF07698 7TM receptor with intracellular HD hydrolase BF90_2267 PF02562 PhoH-like protein BF90_2268 PF06898 Putative stage IV sporulation protein YqfD BF90_2269 PF07873 YabP family BF90_2270 PF09424 Yqey-like protein BF90_2271 PF01165 Ribosomal protein S21 BF90_2272 PF01938 TRAM domain BF90_2272 PF00919 Uncharacterized protein family UPF0004 BF90_2272 PF04055 Radical SAM superfamily BF90_2273 PF04452 RNA methyltransferase BF90_2275 PF00684 DnaJ central domain BF90_2275 PF00226 DnaJ domain BF90_2275 PF01556 DnaJ C terminal domain BF90_2276 PF00012 Hsp70 protein BF90_2277 PF01025 GrpE BF90_2278 PF01628 HrcA protein C terminal domain BF90_2279 PF04055 Radical SAM superfamily BF90_2279 PF06969 HemN C-terminal domain BF90_2280 PF01638 HxlR-like helix-turn-helix BF90_2281 PF06421 GTP-binding protein LepA C-terminus BF90_2281 PF03144 Elongation factor Tu domain 2 BF90_2281 PF00679 Elongation factor G C-terminus BF90_2281 PF00009 Elongation factor Tu GTP binding domain BF90_2283 PF03418 Germination protease BF90_2284 PF01649 Ribosomal protein S20 BF90_2285 PF06144 DNA polymerase III, delta subunit BF90_2286 PF14141 YqzM-like protein BF90_2287 PF03772 Competence protein BF90_2287 PF13567 Domain of unknown function (DUF4131) BF90_2287 PF00753 Metallo-beta-lactamase superfamily BF90_2288 PF03772 Competence protein BF90_2288 PF13567 Domain of unknown function (DUF4131) BF90_2288 PF00753 Metallo-beta-lactamase superfamily BF90_2289 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF90_229 PF12146 Serine aminopeptidase, S33 BF90_2290 PF10531 SLBB domain BF90_2291 PF03807 NADP oxidoreductase coenzyme F420-dependent BF90_2291 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF90_2292 PF13649 Methyltransferase domain BF90_2294 PF01966 HD domain BF90_2295 PF01467 Cytidylyltransferase-like BF90_2296 PF01985 CRS1 / YhbY (CRM) domain BF90_2297 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BF90_2297 PF01488 Shikimate / quinate 5-dehydrogenase BF90_2297 PF08501 Shikimate dehydrogenase substrate binding domain BF90_2298 PF01926 50S ribosome-binding GTPase BF90_23 PF06491 Disulphide isomerase BF90_230 PF07690 Major Facilitator Superfamily BF90_2301 PF02666 Phosphatidylserine decarboxylase BF90_2302 PF04542 Sigma-70 region 2 BF90_2302 PF04545 Sigma-70, region 4 BF90_2304 PF16244 Domain of unknown function (DUF4901) BF90_2305 PF00471 Ribosomal protein L33 BF90_2306 PF00881 Nitroreductase family BF90_2307 PF04607 Region found in RelA / SpoT proteins BF90_2309 PF00245 Alkaline phosphatase BF90_2311 PF08386 TAP-like protein BF90_2311 PF00561 alpha/beta hydrolase fold BF90_2318 PF00082 Subtilase family BF90_2318 PF13860 FlgD Ig-like domain BF90_2318 PF02225 PA domain BF90_2318 PF05922 Peptidase inhibitor I9 BF90_2319 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BF90_2321 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_2322 PF07681 DoxX BF90_2328 PF00005 ABC transporter BF90_2329 PF01032 FecCD transport family BF90_2330 PF01497 Periplasmic binding protein BF90_2331 PF14143 YrhC-like protein BF90_2332 PF00465 Iron-containing alcohol dehydrogenase BF90_2332 PF00171 Aldehyde dehydrogenase family BF90_2333 PF01053 Cys/Met metabolism PLP-dependent enzyme BF90_2334 PF00291 Pyridoxal-phosphate dependent enzyme BF90_2335 PF01048 Phosphorylase superfamily BF90_2336 PF08241 Methyltransferase domain BF90_2339 PF03717 Penicillin-binding Protein dimerisation domain BF90_2339 PF00905 Penicillin binding protein transpeptidase domain BF90_2340 PF01272 Transcription elongation factor, GreA/GreB, C-term BF90_2340 PF03449 Transcription elongation factor, N-terminal BF90_2341 PF00485 Phosphoribulokinase / Uridine kinase family BF90_2345 PF02618 YceG-like family BF90_2346 PF06949 Protein of unknown function (DUF1292) BF90_2347 PF03652 Holliday junction resolvase BF90_2348 PF06135 IreB regulatory phosphoprotein BF90_2349 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF90_2349 PF02272 DHHA1 domain BF90_2349 PF01411 tRNA synthetases class II (A) BF90_235 PF13649 Methyltransferase domain BF90_2351 PF01594 AI-2E family transporter BF90_2355 PF13538 UvrD-like helicase C-terminal domain BF90_2355 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BF90_2355 PF14490 Helix-hairpin-helix containing domain BF90_2358 PF00266 Aminotransferase class-V BF90_2359 PF02082 Transcriptional regulator BF90_2360 PF16193 AAA C-terminal domain BF90_2360 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF90_2360 PF12002 MgsA AAA+ ATPase C terminal BF90_2362 PF00899 ThiF family BF90_2363 PF00152 tRNA synthetases class II (D, K and N) BF90_2363 PF01336 OB-fold nucleic acid binding domain BF90_2363 PF02938 GAD domain BF90_2364 PF13393 Histidyl-tRNA synthetase BF90_2364 PF03129 Anticodon binding domain BF90_2366 PF02580 D-Tyr-tRNA(Tyr) deacylase BF90_2367 PF02824 TGS domain BF90_2367 PF04607 Region found in RelA / SpoT proteins BF90_2367 PF13291 ACT domain BF90_2368 PF00156 Phosphoribosyl transferase domain BF90_2369 PF02272 DHHA1 domain BF90_2369 PF17768 RecJ OB domain BF90_2369 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BF90_2369 PF01368 DHH family BF90_2370 PF16916 Dimerisation domain of Zinc Transporter BF90_2370 PF01545 Cation efflux family BF90_2371 PF02355 Protein export membrane protein BF90_2371 PF07549 SecD/SecF GG Motif BF90_2372 PF13797 Post-transcriptional regulator BF90_2373 PF01943 Polysaccharide biosynthesis protein BF90_2373 PF14667 Polysaccharide biosynthesis C-terminal domain BF90_2374 PF04239 Protein of unknown function (DUF421) BF90_2376 PF02699 Preprotein translocase subunit BF90_2377 PF01702 Queuine tRNA-ribosyltransferase BF90_2378 PF02547 Queuosine biosynthesis protein BF90_2379 PF11146 Protein of unknown function (DUF2905) BF90_2380 PF05491 RuvB C-terminal winged helix domain BF90_2380 PF17864 RuvB AAA lid domain BF90_2380 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF90_2381 PF07499 RuvA, C-terminal domain BF90_2381 PF01330 RuvA N terminal domain BF90_2382 PF01497 Periplasmic binding protein BF90_2384 PF00892 EamA-like transporter family BF90_2385 PF00892 EamA-like transporter family BF90_2386 PF01022 Bacterial regulatory protein, arsR family BF90_2389 PF01476 LysM domain BF90_2390 PF02445 Quinolinate synthetase A protein BF90_2391 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF90_2391 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF90_2392 PF02910 Fumarate reductase flavoprotein C-term BF90_2392 PF00890 FAD binding domain BF90_2393 PF00266 Aminotransferase class-V BF90_2394 PF02829 3H domain BF90_2394 PF08279 HTH domain BF90_2395 PF03473 MOSC domain BF90_2395 PF03475 3-alpha domain BF90_2396 PF01842 ACT domain BF90_2396 PF00800 Prephenate dehydratase BF90_2397 PF02687 FtsX-like permease family BF90_2398 PF02687 FtsX-like permease family BF90_2399 PF00005 ABC transporter BF90_24 PF04445 Putative SAM-dependent methyltransferase BF90_2400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2402 PF00072 Response regulator receiver domain BF90_2402 PF00486 Transcriptional regulatory protein, C terminal BF90_2403 PF09269 Domain of unknown function (DUF1967) BF90_2403 PF01926 50S ribosome-binding GTPase BF90_2403 PF01018 GTP1/OBG BF90_2404 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF90_2404 PF14682 Sporulation initiation phospho-transferase B, C-terminal BF90_2405 PF01016 Ribosomal L27 protein BF90_2406 PF04327 Cysteine protease Prp BF90_2407 PF00829 Ribosomal prokaryotic L21 protein BF90_2408 PF00575 S1 RNA binding domain BF90_2408 PF10150 Ribonuclease E/G family BF90_2409 PF02163 Peptidase family M50 BF90_2410 PF01551 Peptidase family M23 BF90_2411 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF90_2412 PF03775 Septum formation inhibitor MinC, C-terminal domain BF90_2414 PF04085 rod shape-determining protein MreC BF90_2416 PF04002 RadC-like JAB domain BF90_2417 PF02545 Maf-like protein BF90_2419 PF08245 Mur ligase middle domain BF90_2419 PF02875 Mur ligase family, glutamate ligase domain BF90_2420 PF08264 Anticodon-binding domain of tRNA BF90_2420 PF10458 Valyl tRNA synthetase tRNA binding arm BF90_2420 PF00133 tRNA synthetases class I (I, L, M and V) BF90_2422 PF01476 LysM domain BF90_2423 PF00202 Aminotransferase class-III BF90_2424 PF00490 Delta-aminolevulinic acid dehydratase BF90_2425 PF02602 Uroporphyrinogen-III synthase HemD BF90_2426 PF03900 Porphobilinogen deaminase, C-terminal domain BF90_2426 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BF90_2427 PF01578 Cytochrome C assembly protein BF90_2428 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BF90_2428 PF01488 Shikimate / quinate 5-dehydrogenase BF90_2428 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BF90_2429 PF01047 MarR family BF90_2430 PF02566 OsmC-like protein BF90_2431 PF01926 50S ribosome-binding GTPase BF90_2432 PF05362 Lon protease (S16) C-terminal proteolytic domain BF90_2432 PF00004 ATPase family associated with various cellular activities (AAA) BF90_2432 PF02190 ATP-dependent protease La (LON) substrate-binding domain BF90_2433 PF05362 Lon protease (S16) C-terminal proteolytic domain BF90_2433 PF00004 ATPase family associated with various cellular activities (AAA) BF90_2434 PF06689 ClpX C4-type zinc finger BF90_2434 PF07724 AAA domain (Cdc48 subfamily) BF90_2434 PF10431 C-terminal, D2-small domain, of ClpB protein BF90_2435 PF05698 Bacterial trigger factor protein (TF) C-terminus BF90_2435 PF05697 Bacterial trigger factor protein (TF) BF90_2435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF90_2439 PF11724 YvbH-like oligomerisation region BF90_2439 PF08000 Bacterial PH domain BF90_244 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF90_244 PF00753 Metallo-beta-lactamase superfamily BF90_2443 PF12850 Calcineurin-like phosphoesterase superfamily domain BF90_2444 PF01725 Ham1 family BF90_2445 PF03725 3' exoribonuclease family, domain 2 BF90_2445 PF01138 3' exoribonuclease family, domain 1 BF90_2446 PF10646 Sporulation and spore germination BF90_2447 PF01177 Asp/Glu/Hydantoin racemase BF90_2448 PF07690 Major Facilitator Superfamily BF90_2450 PF00440 Bacterial regulatory proteins, tetR family BF90_2453 PF00196 Bacterial regulatory proteins, luxR family BF90_2454 PF00860 Permease family BF90_2456 PF07969 Amidohydrolase family BF90_2457 PF07969 Amidohydrolase family BF90_2458 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_246 PF03176 MMPL family BF90_2460 PF00528 Binding-protein-dependent transport system inner membrane component BF90_2461 PF00005 ABC transporter BF90_2461 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_2462 PF00005 ABC transporter BF90_2462 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_2463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2463 PF07694 5TMR of 5TMR-LYT BF90_2463 PF06580 Histidine kinase BF90_2464 PF04397 LytTr DNA-binding domain BF90_2464 PF00072 Response regulator receiver domain BF90_2467 PF04024 PspC domain BF90_2468 PF07883 Cupin domain BF90_2468 PF01381 Helix-turn-helix BF90_2469 PF13536 Putative multidrug resistance efflux transporter BF90_2470 PF00230 Major intrinsic protein BF90_2471 PF02082 Transcriptional regulator BF90_2473 PF00005 ABC transporter BF90_2473 PF13732 Domain of unknown function (DUF4162) BF90_2474 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BF90_2475 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF90_2475 PF00691 OmpA family BF90_2476 PF00691 OmpA family BF90_2476 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF90_2477 PF01618 MotA/TolQ/ExbB proton channel family BF90_2478 PF02557 D-alanyl-D-alanine carboxypeptidase BF90_2479 PF03061 Thioesterase superfamily BF90_248 PF00302 Chloramphenicol acetyltransferase BF90_2480 PF13085 2Fe-2S iron-sulfur cluster binding domain BF90_2480 PF13183 4Fe-4S dicluster domain BF90_2481 PF00890 FAD binding domain BF90_2481 PF02910 Fumarate reductase flavoprotein C-term BF90_2482 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BF90_2483 PF10702 Protein of unknown function (DUF2507) BF90_2484 PF08459 UvrC Helix-hairpin-helix N-terminal BF90_2484 PF02151 UvrB/uvrC motif BF90_2484 PF01541 GIY-YIG catalytic domain BF90_2485 PF00085 Thioredoxin BF90_2486 PF00766 Electron transfer flavoprotein FAD-binding domain BF90_2486 PF01012 Electron transfer flavoprotein domain BF90_2487 PF01012 Electron transfer flavoprotein domain BF90_2488 PF00378 Enoyl-CoA hydratase/isomerase BF90_2489 PF00440 Bacterial regulatory proteins, tetR family BF90_2489 PF08359 YsiA-like protein, C-terminal region BF90_2490 PF00501 AMP-binding enzyme BF90_2490 PF13193 AMP-binding enzyme C-terminal domain BF90_2492 PF01497 Periplasmic binding protein BF90_2493 PF01032 FecCD transport family BF90_2494 PF05163 DinB family BF90_25 PF00750 tRNA synthetases class I (R) BF90_25 PF05746 DALR anticodon binding domain BF90_25 PF03485 Arginyl tRNA synthetase N terminal domain BF90_2500 PF00005 ABC transporter BF90_2501 PF00512 His Kinase A (phospho-acceptor) domain BF90_2501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2502 PF00486 Transcriptional regulatory protein, C terminal BF90_2502 PF00072 Response regulator receiver domain BF90_2504 PF09962 Uncharacterized conserved protein (DUF2196) BF90_2505 PF10672 S-adenosylmethionine-dependent methyltransferase BF90_2505 PF17785 PUA-like domain BF90_2507 PF03992 Antibiotic biosynthesis monooxygenase BF90_2508 PF04203 Sortase domain BF90_2509 PF00005 ABC transporter BF90_251 PF00583 Acetyltransferase (GNAT) family BF90_2510 PF01032 FecCD transport family BF90_2511 PF01497 Periplasmic binding protein BF90_2512 PF05031 Iron Transport-associated domain BF90_2513 PF05031 Iron Transport-associated domain BF90_2515 PF05031 Iron Transport-associated domain BF90_2516 PF05525 Branched-chain amino acid transport protein BF90_2517 PF01479 S4 domain BF90_2517 PF00849 RNA pseudouridylate synthase BF90_2519 PF00488 MutS domain V BF90_2519 PF01713 Smr domain BF90_2520 PF14716 Helix-hairpin-helix domain BF90_2520 PF14791 DNA polymerase beta thumb BF90_2520 PF02811 PHP domain BF90_2521 PF02674 Colicin V production protein BF90_2522 PF05164 Cell division protein ZapA BF90_2523 PF11858 Domain of unknown function (DUF3378) BF90_2523 PF01351 Ribonuclease HII BF90_2527 PF00152 tRNA synthetases class II (D, K and N) BF90_2527 PF01336 OB-fold nucleic acid binding domain BF90_2528 PF03484 tRNA synthetase B5 domain BF90_2528 PF01588 Putative tRNA binding domain BF90_2528 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BF90_2528 PF03483 B3/4 domain BF90_2528 PF03147 Ferredoxin-fold anticodon binding domain BF90_2529 PF01409 tRNA synthetases class II core domain (F) BF90_2529 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF90_2530 PF00588 SpoU rRNA Methylase family BF90_2530 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF90_2531 PF14098 Small, acid-soluble spore protein I BF90_2532 PF01966 HD domain BF90_2537 PF07690 Major Facilitator Superfamily BF90_2539 PF00440 Bacterial regulatory proteins, tetR family BF90_2539 PF16859 Tetracyclin repressor-like, C-terminal domain BF90_2540 PF05343 M42 glutamyl aminopeptidase BF90_2542 PF00453 Ribosomal protein L20 BF90_2543 PF01632 Ribosomal protein L35 BF90_2544 PF00707 Translation initiation factor IF-3, C-terminal domain BF90_2544 PF05198 Translation initiation factor IF-3, N-terminal domain BF90_2545 PF03129 Anticodon binding domain BF90_2545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF90_2545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF90_2545 PF02824 TGS domain BF90_2546 PF08812 YtxC-like family BF90_2547 PF01695 IstB-like ATP binding protein BF90_2547 PF07319 Primosomal protein DnaI N-terminus BF90_2548 PF07261 Replication initiation and membrane attachment BF90_2549 PF03477 ATP cone domain BF90_2550 PF02675 S-adenosylmethionine decarboxylase BF90_2551 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF90_2551 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF90_2552 PF01121 Dephospho-CoA kinase BF90_2553 PF02659 Putative manganese efflux pump BF90_2554 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BF90_2554 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BF90_2554 PF06827 Zinc finger found in FPG and IleRS BF90_2555 PF01367 5'-3' exonuclease, C-terminal SAM fold BF90_2555 PF00476 DNA polymerase family A BF90_2555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF90_2556 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2556 PF16736 Single Cache-like BF90_2556 PF00512 His Kinase A (phospho-acceptor) domain BF90_2556 PF00989 PAS fold BF90_2557 PF00486 Transcriptional regulatory protein, C terminal BF90_2557 PF00072 Response regulator receiver domain BF90_2560 PF00056 lactate/malate dehydrogenase, NAD binding domain BF90_2560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF90_2561 PF00180 Isocitrate/isopropylmalate dehydrogenase BF90_2562 PF00285 Citrate synthase, C-terminal domain BF90_2563 PF04284 Protein of unknown function (DUF441) BF90_2564 PF01594 AI-2E family transporter BF90_2565 PF04186 FxsA cytoplasmic membrane protein BF90_2566 PF00224 Pyruvate kinase, barrel domain BF90_2566 PF00391 PEP-utilising enzyme, mobile domain BF90_2566 PF02887 Pyruvate kinase, alpha/beta domain BF90_2567 PF00365 Phosphofructokinase BF90_2568 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF90_2569 PF17848 Acetyl-coA carboxylase zinc finger domain BF90_2569 PF01039 Carboxyl transferase domain BF90_2570 PF00392 Bacterial regulatory proteins, gntR family BF90_2571 PF00390 Malic enzyme, N-terminal domain BF90_2571 PF03949 Malic enzyme, NAD binding domain BF90_2572 PF02811 PHP domain BF90_2572 PF01336 OB-fold nucleic acid binding domain BF90_2572 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF90_2572 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF90_2572 PF14579 Helix-hairpin-helix motif BF90_2573 PF14034 Sporulation protein YtrH BF90_2575 PF02272 DHHA1 domain BF90_2575 PF01368 DHH family BF90_2576 PF14007 YtpI-like protein BF90_2579 PF07085 DRTGG domain BF90_2579 PF03061 Thioesterase superfamily BF90_2579 PF00392 Bacterial regulatory proteins, gntR family BF90_2579 PF00571 CBS domain BF90_2582 PF01321 Creatinase/Prolidase N-terminal domain BF90_2582 PF00557 Metallopeptidase family M24 BF90_2583 PF11518 Protein of unknown function (DUF3221) BF90_2589 PF12746 GNAT acetyltransferase BF90_259 PF13302 Acetyltransferase (GNAT) domain BF90_2590 PF07883 Cupin domain BF90_2592 PF01381 Helix-turn-helix BF90_2594 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF90_2594 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF90_2596 PF00582 Universal stress protein family BF90_2599 PF14698 Argininosuccinate lyase C-terminal BF90_2599 PF00206 Lyase BF90_2600 PF00764 Arginosuccinate synthase BF90_2604 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_2604 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_2605 PF12787 EcsC protein family BF90_2608 PF00871 Acetokinase family BF90_2609 PF02384 N-6 DNA Methylase BF90_261 PF00313 'Cold-shock' DNA-binding domain BF90_2610 PF08534 Redoxin BF90_2611 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF90_2613 PF01513 ATP-NAD kinase BF90_2614 PF07969 Amidohydrolase family BF90_2616 PF00501 AMP-binding enzyme BF90_2616 PF13193 AMP-binding enzyme C-terminal domain BF90_2617 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF90_2618 PF02926 THUMP domain BF90_2618 PF02568 Thiamine biosynthesis protein (ThiI) BF90_2619 PF00266 Aminotransferase class-V BF90_2620 PF06160 Septation ring formation regulator, EzrA BF90_2621 PF03466 LysR substrate binding domain BF90_2621 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_2622 PF00892 EamA-like transporter family BF90_2623 PF00440 Bacterial regulatory proteins, tetR family BF90_2624 PF00440 Bacterial regulatory proteins, tetR family BF90_2625 PF13185 GAF domain BF90_2626 PF01053 Cys/Met metabolism PLP-dependent enzyme BF90_2627 PF00163 Ribosomal protein S4/S9 N-terminal domain BF90_2627 PF01479 S4 domain BF90_2630 PF01479 S4 domain BF90_2630 PF00579 tRNA synthetases class I (W and Y) BF90_2632 PF08281 Sigma-70, region 4 BF90_2632 PF04542 Sigma-70 region 2 BF90_2634 PF13193 AMP-binding enzyme C-terminal domain BF90_2634 PF00501 AMP-binding enzyme BF90_2635 PF00583 Acetyltransferase (GNAT) family BF90_2636 PF00571 CBS domain BF90_2637 PF00850 Histone deacetylase domain BF90_2639 PF00486 Transcriptional regulatory protein, C terminal BF90_2639 PF00072 Response regulator receiver domain BF90_2640 PF13426 PAS domain BF90_2640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2640 PF00672 HAMP domain BF90_2640 PF00512 His Kinase A (phospho-acceptor) domain BF90_2641 PF12796 Ankyrin repeats (3 copies) BF90_2642 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF90_2643 PF01741 Large-conductance mechanosensitive channel, MscL BF90_2648 PF00356 Bacterial regulatory proteins, lacI family BF90_2649 PF07537 CamS sex pheromone cAM373 precursor BF90_2650 PF11009 Protein of unknown function (DUF2847) BF90_2652 PF02073 Thermophilic metalloprotease (M29) BF90_2656 PF13302 Acetyltransferase (GNAT) domain BF90_2657 PF01225 Mur ligase family, catalytic domain BF90_2657 PF08245 Mur ligase middle domain BF90_2657 PF02875 Mur ligase family, glutamate ligase domain BF90_2659 PF17854 FtsK alpha domain BF90_2659 PF01580 FtsK/SpoIIIE family BF90_2659 PF09397 Ftsk gamma domain BF90_2661 PF01588 Putative tRNA binding domain BF90_2661 PF14794 Domain of unknown function (DUF4479) BF90_2662 PF07285 Protein of unknown function (DUF1444) BF90_2663 PF00085 Thioredoxin BF90_2664 PF01931 Protein of unknown function DUF84 BF90_2665 PF05343 M42 glutamyl aminopeptidase BF90_2667 PF00753 Metallo-beta-lactamase superfamily BF90_2668 PF02390 Putative methyltransferase BF90_2669 PF14165 YtzH-like protein BF90_2670 PF01636 Phosphotransferase enzyme family BF90_2671 PF17999 Pullulanase N1-terminal domain BF90_2671 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF90_2671 PF00128 Alpha amylase, catalytic domain BF90_2672 PF02834 LigT like Phosphoesterase BF90_2673 PF01546 Peptidase family M20/M25/M40 BF90_2674 PF08220 DeoR-like helix-turn-helix domain BF90_2675 PF01479 S4 domain BF90_2675 PF00849 RNA pseudouridylate synthase BF90_2676 PF01943 Polysaccharide biosynthesis protein BF90_2676 PF14667 Polysaccharide biosynthesis C-terminal domain BF90_2678 PF07690 Major Facilitator Superfamily BF90_2679 PF01022 Bacterial regulatory protein, arsR family BF90_2680 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF90_2682 PF10957 Sporulation protein Cse60 BF90_2684 PF02559 CarD-like/TRCF domain BF90_2686 PF06800 Sugar transport protein BF90_2689 PF02391 MoaE protein BF90_2690 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BF90_2691 PF03453 MoeA N-terminal region (domain I and II) BF90_2691 PF00994 Probable molybdopterin binding domain BF90_2691 PF03454 MoeA C-terminal region (domain IV) BF90_2692 PF01967 MoaC family BF90_2693 PF00899 ThiF family BF90_2694 PF04055 Radical SAM superfamily BF90_2694 PF06463 Molybdenum Cofactor Synthesis C BF90_2698 PF00581 Rhodanese-like domain BF90_2700 PF00561 alpha/beta hydrolase fold BF90_2701 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_2702 PF03845 Spore germination protein BF90_2707 PF00133 tRNA synthetases class I (I, L, M and V) BF90_2707 PF08264 Anticodon-binding domain of tRNA BF90_2707 PF09334 tRNA synthetases class I (M) BF90_2707 PF13603 Leucyl-tRNA synthetase, Domain 2 BF90_2708 PF07690 Major Facilitator Superfamily BF90_2709 PF00999 Sodium/hydrogen exchanger family BF90_2710 PF02080 TrkA-C domain BF90_2711 PF00589 Phage integrase family BF90_2713 PF00005 ABC transporter BF90_2714 PF07786 Protein of unknown function (DUF1624) BF90_2714 PF04235 Protein of unknown function (DUF418) BF90_2716 PF10732 Protein of unknown function (DUF2524) BF90_2717 PF16199 Radical_SAM C-terminal domain BF90_2717 PF04055 Radical SAM superfamily BF90_2718 PF06962 Putative rRNA methylase BF90_2719 PF13732 Domain of unknown function (DUF4162) BF90_2719 PF00005 ABC transporter BF90_2721 PF01177 Asp/Glu/Hydantoin racemase BF90_2724 PF10776 Protein of unknown function (DUF2600) BF90_2725 PF12146 Serine aminopeptidase, S33 BF90_2726 PF00132 Bacterial transferase hexapeptide (six repeats) BF90_2727 PF01569 PAP2 superfamily BF90_2728 PF00534 Glycosyl transferases group 1 BF90_2728 PF13439 Glycosyltransferase Family 4 BF90_2729 PF12804 MobA-like NTP transferase domain BF90_273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_273 PF03466 LysR substrate binding domain BF90_2730 PF00994 Probable molybdopterin binding domain BF90_2733 PF02772 S-adenosylmethionine synthetase, central domain BF90_2733 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF90_2733 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF90_2734 PF01293 Phosphoenolpyruvate carboxykinase BF90_274 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF90_274 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF90_2740 PF01784 NIF3 (NGG1p interacting factor 3) BF90_2741 PF13188 PAS domain BF90_2741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2741 PF00989 PAS fold BF90_2741 PF00512 His Kinase A (phospho-acceptor) domain BF90_2741 PF13426 PAS domain BF90_2742 PF08447 PAS fold BF90_2742 PF00989 PAS fold BF90_2742 PF00512 His Kinase A (phospho-acceptor) domain BF90_2742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2743 PF08386 TAP-like protein BF90_2743 PF00561 alpha/beta hydrolase fold BF90_2744 PF00884 Sulfatase BF90_2748 PF00005 ABC transporter BF90_2749 PF00528 Binding-protein-dependent transport system inner membrane component BF90_2755 PF00293 NUDIX domain BF90_2759 PF02664 S-Ribosylhomocysteinase (LuxS) BF90_2760 PF00484 Carbonic anhydrase BF90_2761 PF01809 Putative membrane protein insertion efficiency factor BF90_2762 PF01654 Cytochrome bd terminal oxidase subunit I BF90_2763 PF02322 Cytochrome bd terminal oxidase subunit II BF90_2764 PF10676 Spore germination protein gerPA/gerPF BF90_2767 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_2767 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_277 PF03466 LysR substrate binding domain BF90_2772 PF04012 PspA/IM30 family BF90_2776 PF07664 Ferrous iron transport protein B C terminus BF90_2776 PF17910 FeoB cytosolic helical domain BF90_2776 PF02421 Ferrous iron transport protein B BF90_2776 PF07670 Nucleoside recognition BF90_2778 PF09515 Thiamine transporter protein (Thia_YuaJ) BF90_2779 PF00512 His Kinase A (phospho-acceptor) domain BF90_2779 PF00672 HAMP domain BF90_2779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_278 PF03473 MOSC domain BF90_278 PF03475 3-alpha domain BF90_2780 PF00486 Transcriptional regulatory protein, C terminal BF90_2780 PF00072 Response regulator receiver domain BF90_2786 PF00781 Diacylglycerol kinase catalytic domain BF90_2790 PF00248 Aldo/keto reductase family BF90_2793 PF09335 SNARE associated Golgi protein BF90_2794 PF00398 Ribosomal RNA adenine dimethylase BF90_2795 PF02687 FtsX-like permease family BF90_2796 PF00005 ABC transporter BF90_2797 PF06445 GyrI-like small molecule binding domain BF90_2797 PF12833 Helix-turn-helix domain BF90_2798 PF00072 Response regulator receiver domain BF90_2798 PF00486 Transcriptional regulatory protein, C terminal BF90_2799 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2800 PF02687 FtsX-like permease family BF90_2801 PF02687 FtsX-like permease family BF90_2802 PF00005 ABC transporter BF90_2803 PF02687 FtsX-like permease family BF90_2804 PF02687 FtsX-like permease family BF90_2806 PF02447 GntP family permease BF90_2809 PF07071 KDGP aldolase BF90_281 PF00664 ABC transporter transmembrane region BF90_281 PF00005 ABC transporter BF90_2810 PF03841 L-seryl-tRNA selenium transferase BF90_2811 PF01979 Amidohydrolase family BF90_2814 PF02557 D-alanyl-D-alanine carboxypeptidase BF90_2815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_2815 PF00512 His Kinase A (phospho-acceptor) domain BF90_2816 PF00486 Transcriptional regulatory protein, C terminal BF90_2816 PF00072 Response regulator receiver domain BF90_2817 PF13378 Enolase C-terminal domain-like BF90_2817 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF90_2818 PF13193 AMP-binding enzyme C-terminal domain BF90_2818 PF00501 AMP-binding enzyme BF90_2819 PF00378 Enoyl-CoA hydratase/isomerase BF90_282 PF00005 ABC transporter BF90_282 PF00664 ABC transporter transmembrane region BF90_2820 PF00561 alpha/beta hydrolase fold BF90_2821 PF16582 Middle domain of thiamine pyrophosphate BF90_2821 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF90_2821 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF90_2822 PF00425 chorismate binding enzyme BF90_2823 PF01040 UbiA prenyltransferase family BF90_2824 PF01258 Prokaryotic dksA/traR C4-type zinc finger BF90_2825 PF00313 'Cold-shock' DNA-binding domain BF90_2829 PF00343 Carbohydrate phosphorylase BF90_2830 PF00534 Glycosyl transferases group 1 BF90_2830 PF08323 Starch synthase catalytic domain BF90_2831 PF00483 Nucleotidyl transferase BF90_2832 PF00483 Nucleotidyl transferase BF90_2833 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF90_2833 PF00128 Alpha amylase, catalytic domain BF90_2833 PF02806 Alpha amylase, C-terminal all-beta domain BF90_2834 PF00056 lactate/malate dehydrogenase, NAD binding domain BF90_2834 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF90_285 PF01810 LysE type translocator BF90_2853 PF05698 Bacterial trigger factor protein (TF) C-terminus BF90_2853 PF05697 Bacterial trigger factor protein (TF) BF90_286 PF01381 Helix-turn-helix BF90_286 PF07883 Cupin domain BF90_2861 PF02308 MgtC family BF90_2862 PF08868 YugN-like family BF90_2863 PF02254 TrkA-N domain BF90_2863 PF07885 Ion channel BF90_2864 PF00342 Phosphoglucose isomerase BF90_2865 PF04070 Domain of unknown function (DUF378) BF90_2866 PF00575 S1 RNA binding domain BF90_2867 PF00155 Aminotransferase class I and II BF90_2868 PF01037 Lrp/AsnC ligand binding domain BF90_2869 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF90_2869 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF90_2870 PF00561 alpha/beta hydrolase fold BF90_2870 PF08386 TAP-like protein BF90_2872 PF00155 Aminotransferase class I and II BF90_2875 PF08810 Kinase associated protein B BF90_2876 PF00929 Exonuclease BF90_2877 PF03600 Citrate transporter BF90_2880 PF03129 Anticodon binding domain BF90_2880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF90_2881 PF03061 Thioesterase superfamily BF90_2883 PF02632 BioY family BF90_2885 PF00483 Nucleotidyl transferase BF90_2886 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF90_2886 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF90_2886 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF90_2886 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF90_2887 PF10372 Bacterial membrane-spanning protein N-terminus BF90_2887 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF90_2888 PF02789 Cytosol aminopeptidase family, N-terminal domain BF90_2888 PF00883 Cytosol aminopeptidase family, catalytic domain BF90_2889 PF06725 3D domain BF90_2891 PF00293 NUDIX domain BF90_2891 PF13344 Haloacid dehalogenase-like hydrolase BF90_2892 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_2893 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_2895 PF06445 GyrI-like small molecule binding domain BF90_2898 PF04463 Protein of unknown function (DUF523) BF90_2901 PF01521 Iron-sulphur cluster biosynthesis BF90_2902 PF01678 Diaminopimelate epimerase BF90_2903 PF07293 Protein of unknown function (DUF1450) BF90_2904 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_2905 PF00664 ABC transporter transmembrane region BF90_2905 PF00005 ABC transporter BF90_2905 PF03412 Peptidase C39 family BF90_2906 PF03649 Uncharacterised protein family (UPF0014) BF90_2907 PF03831 PhnA domain BF90_2907 PF08274 PhnA Zinc-Ribbon BF90_291 PF00890 FAD binding domain BF90_2915 PF07315 Protein of unknown function (DUF1462) BF90_2916 PF01106 NifU-like domain BF90_2919 PF04608 Phosphatidylglycerophosphatase A BF90_292 PF12680 SnoaL-like domain BF90_292 PF04542 Sigma-70 region 2 BF90_292 PF08281 Sigma-70, region 4 BF90_2921 PF02525 Flavodoxin-like fold BF90_2922 PF13344 Haloacid dehalogenase-like hydrolase BF90_2924 PF01934 Protein of unknown function DUF86 BF90_2925 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF90_2927 PF06265 Protein of unknown function (DUF1027) BF90_2929 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF90_2930 PF13411 MerR HTH family regulatory protein BF90_2930 PF07739 TipAS antibiotic-recognition domain BF90_2931 PF10086 YhfC intramembrane metalloprotease BF90_2935 PF04055 Radical SAM superfamily BF90_2935 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BF90_2936 PF01551 Peptidase family M23 BF90_2938 PF08827 Domain of unknown function (DUF1805) BF90_2939 PF02872 5'-nucleotidase, C-terminal domain BF90_2940 PF03551 Transcriptional regulator PadR-like family BF90_2941 PF04892 VanZ like family BF90_2942 PF01458 Uncharacterized protein family (UPF0051) BF90_2943 PF01592 NifU-like N terminal domain BF90_2944 PF00266 Aminotransferase class-V BF90_2945 PF01458 Uncharacterized protein family (UPF0051) BF90_2946 PF00005 ABC transporter BF90_2947 PF03180 NLPA lipoprotein BF90_2948 PF03180 NLPA lipoprotein BF90_2949 PF00528 Binding-protein-dependent transport system inner membrane component BF90_2950 PF00005 ABC transporter BF90_2950 PF09383 NIL domain BF90_2952 PF00085 Thioredoxin BF90_2953 PF01751 Toprim domain BF90_2954 PF01597 Glycine cleavage H-protein BF90_2955 PF03960 ArsC family BF90_2956 PF03960 ArsC family BF90_2965 PF00056 lactate/malate dehydrogenase, NAD binding domain BF90_2965 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF90_297 PF02638 Glycosyl hydrolase-like 10 BF90_2970 PF13305 Tetracyclin repressor-like, C-terminal domain BF90_2970 PF00440 Bacterial regulatory proteins, tetR family BF90_2971 PF00753 Metallo-beta-lactamase superfamily BF90_2972 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF90_2972 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF90_2972 PF02770 Acyl-CoA dehydrogenase, middle domain BF90_2973 PF00108 Thiolase, N-terminal domain BF90_2973 PF02803 Thiolase, C-terminal domain BF90_2974 PF00378 Enoyl-CoA hydratase/isomerase BF90_2974 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF90_2974 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF90_2975 PF14115 YuzL-like protein BF90_2976 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_2976 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_2977 PF01619 Proline dehydrogenase BF90_2978 PF10835 Protein of unknown function (DUF2573) BF90_2979 PF01910 Thiamine-binding protein BF90_2980 PF02743 Cache domain BF90_2980 PF00672 HAMP domain BF90_2980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_2984 PF07690 Major Facilitator Superfamily BF90_2985 PF13520 Amino acid permease BF90_2987 PF02096 60Kd inner membrane protein BF90_2989 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_2989 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_299 PF02378 Phosphotransferase system, EIIC BF90_2996 PF09335 SNARE associated Golgi protein BF90_2998 PF17969 L,D-transpeptidase C-terminal domain BF90_2998 PF03734 L,D-transpeptidase catalytic domain BF90_2999 PF00486 Transcriptional regulatory protein, C terminal BF90_2999 PF00072 Response regulator receiver domain BF90_3000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3000 PF00512 His Kinase A (phospho-acceptor) domain BF90_3000 PF00989 PAS fold BF90_3000 PF16736 Single Cache-like BF90_3002 PF08264 Anticodon-binding domain of tRNA BF90_3002 PF09334 tRNA synthetases class I (M) BF90_3004 PF02743 Cache domain BF90_3004 PF00672 HAMP domain BF90_3004 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_3005 PF01883 Iron-sulfur cluster assembly protein BF90_3006 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF90_3006 PF03413 Peptidase propeptide and YPEB domain BF90_3006 PF01447 Thermolysin metallopeptidase, catalytic domain BF90_3006 PF07504 Fungalysin/Thermolysin Propeptide Motif BF90_3007 PF17954 Quercetinase C-terminal cupin domain BF90_3007 PF02678 Pirin BF90_3008 PF01047 MarR family BF90_301 PF03702 Anhydro-N-acetylmuramic acid kinase BF90_3010 PF00999 Sodium/hydrogen exchanger family BF90_3011 PF02080 TrkA-C domain BF90_3012 PF01235 Sodium:alanine symporter family BF90_3013 PF00210 Ferritin-like domain BF90_3016 PF03641 Possible lysine decarboxylase BF90_3018 PF00210 Ferritin-like domain BF90_3019 PF04235 Protein of unknown function (DUF418) BF90_302 PF01869 BadF/BadG/BcrA/BcrD ATPase family BF90_3021 PF01773 Na+ dependent nucleoside transporter N-terminus BF90_3021 PF07662 Na+ dependent nucleoside transporter C-terminus BF90_3022 PF07662 Na+ dependent nucleoside transporter C-terminus BF90_3022 PF01773 Na+ dependent nucleoside transporter N-terminus BF90_3023 PF01235 Sodium:alanine symporter family BF90_3024 PF01235 Sodium:alanine symporter family BF90_3025 PF13460 NAD(P)H-binding BF90_303 PF02660 Glycerol-3-phosphate acyltransferase BF90_3030 PF00248 Aldo/keto reductase family BF90_3031 PF07690 Major Facilitator Superfamily BF90_3032 PF01638 HxlR-like helix-turn-helix BF90_3033 PF07849 Protein of unknown function (DUF1641) BF90_3034 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_3035 PF01479 S4 domain BF90_3035 PF00579 tRNA synthetases class I (W and Y) BF90_3036 PF01479 S4 domain BF90_3036 PF00579 tRNA synthetases class I (W and Y) BF90_3037 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF90_3037 PF01565 FAD binding domain BF90_3039 PF00672 HAMP domain BF90_3039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_3039 PF17202 Single cache domain 3 BF90_304 PF00266 Aminotransferase class-V BF90_3041 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF90_3042 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF90_3045 PF13302 Acetyltransferase (GNAT) domain BF90_3046 PF06146 Phosphate-starvation-inducible E BF90_3049 PF00005 ABC transporter BF90_305 PF00291 Pyridoxal-phosphate dependent enzyme BF90_3050 PF01032 FecCD transport family BF90_3051 PF01032 FecCD transport family BF90_3053 PF00072 Response regulator receiver domain BF90_3053 PF00486 Transcriptional regulatory protein, C terminal BF90_3054 PF01668 SmpB protein BF90_3055 PF00773 RNB domain BF90_3055 PF00575 S1 RNA binding domain BF90_3055 PF17876 Cold shock domain BF90_3055 PF08206 Ribonuclease B OB domain BF90_3056 PF12146 Serine aminopeptidase, S33 BF90_3057 PF03840 Preprotein translocase SecG subunit BF90_3058 PF04172 LrgB-like family BF90_3059 PF03788 LrgA family BF90_3060 PF01156 Inosine-uridine preferring nucleoside hydrolase BF90_3079 PF04860 Phage portal protein BF90_308 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF90_308 PF00753 Metallo-beta-lactamase superfamily BF90_3083 PF00589 Phage integrase family BF90_3083 PF02899 Phage integrase, N-terminal SAM-like domain BF90_3084 PF00113 Enolase, C-terminal TIM barrel domain BF90_3084 PF03952 Enolase, N-terminal domain BF90_3085 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF90_3085 PF01676 Metalloenzyme superfamily BF90_3086 PF00121 Triosephosphate isomerase BF90_3087 PF00162 Phosphoglycerate kinase BF90_3088 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF90_3088 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF90_3089 PF04198 Putative sugar-binding domain BF90_3091 PF04963 Sigma-54 factor, core binding domain BF90_3091 PF04552 Sigma-54, DNA binding domain BF90_3091 PF00309 Sigma-54 factor, Activator interacting domain (AID) BF90_3095 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF90_3096 PF07451 Stage V sporulation protein AD (SpoVAD) BF90_3097 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF90_3099 PF04239 Protein of unknown function (DUF421) BF90_31 PF08264 Anticodon-binding domain of tRNA BF90_31 PF00133 tRNA synthetases class I (I, L, M and V) BF90_3100 PF00574 Clp protease BF90_3101 PF00381 PTS HPr component phosphorylation site BF90_3102 PF02650 WhiA C-terminal HTH domain BF90_3102 PF14527 WhiA LAGLIDADG-like domain BF90_3102 PF10298 WhiA N-terminal LAGLIDADG-like domain BF90_3103 PF01933 Uncharacterised protein family UPF0052 BF90_3104 PF03668 P-loop ATPase protein family BF90_3105 PF00293 NUDIX domain BF90_3107 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_3109 PF14602 Hexapeptide repeat of succinyl-transferase BF90_311 PF00271 Helicase conserved C-terminal domain BF90_311 PF00270 DEAD/DEAH box helicase BF90_3110 PF13419 Haloacid dehalogenase-like hydrolase BF90_3111 PF01790 Prolipoprotein diacylglyceryl transferase BF90_3112 PF02603 HPr Serine kinase N terminus BF90_3112 PF07475 HPr Serine kinase C-terminal domain BF90_3113 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BF90_3115 PF00005 ABC transporter BF90_3115 PF17755 UvrA DNA-binding domain BF90_3115 PF17760 UvrA interaction domain BF90_3116 PF00271 Helicase conserved C-terminal domain BF90_3116 PF17757 UvrB interaction domain BF90_3116 PF04851 Type III restriction enzyme, res subunit BF90_3116 PF12344 Ultra-violet resistance protein B BF90_3116 PF02151 UvrB/uvrC motif BF90_3117 PF01385 Probable transposase BF90_3117 PF07282 Putative transposase DNA-binding domain BF90_3117 PF12323 Helix-turn-helix domain BF90_3120 PF13411 MerR HTH family regulatory protein BF90_3120 PF07739 TipAS antibiotic-recognition domain BF90_3124 PF03601 Conserved hypothetical protein 698 BF90_3125 PF03466 LysR substrate binding domain BF90_3125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_3126 PF03466 LysR substrate binding domain BF90_3126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_3127 PF00376 MerR family regulatory protein BF90_3127 PF09278 MerR, DNA binding BF90_3128 PF03358 NADPH-dependent FMN reductase BF90_313 PF17932 Tetracyclin repressor-like, C-terminal domain BF90_313 PF00440 Bacterial regulatory proteins, tetR family BF90_3130 PF01906 Putative heavy-metal-binding BF90_3131 PF00664 ABC transporter transmembrane region BF90_3131 PF00005 ABC transporter BF90_3132 PF17820 PDZ domain BF90_3133 PF17820 PDZ domain BF90_3133 PF03572 Peptidase family S41 BF90_3133 PF01471 Putative peptidoglycan binding domain BF90_3134 PF18075 FtsX extracellular domain BF90_3134 PF02687 FtsX-like permease family BF90_3135 PF00005 ABC transporter BF90_3136 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF90_3137 PF00472 RF-1 domain BF90_3137 PF03462 PCRF domain BF90_3138 PF07516 SecA Wing and Scaffold domain BF90_3138 PF02810 SEC-C motif BF90_3138 PF01043 SecA preprotein cross-linking domain BF90_3138 PF07517 SecA DEAD-like domain BF90_3139 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BF90_3139 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF90_3140 PF00313 'Cold-shock' DNA-binding domain BF90_3142 PF00271 Helicase conserved C-terminal domain BF90_3142 PF04851 Type III restriction enzyme, res subunit BF90_3143 PF01476 LysM domain BF90_3143 PF00877 NlpC/P60 family BF90_3144 PF01638 HxlR-like helix-turn-helix BF90_3145 PF02645 Uncharacterised protein, DegV family COG1307 BF90_3146 PF01205 Uncharacterized protein family UPF0029 BF90_3146 PF09186 Domain of unknown function (DUF1949) BF90_3147 PF03816 Cell envelope-related transcriptional attenuator domain BF90_3148 PF02350 UDP-N-acetylglucosamine 2-epimerase BF90_3149 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF90_3149 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF90_3149 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF90_3150 PF00953 Glycosyl transferase family 4 BF90_3152 PF00158 Sigma-54 interaction domain BF90_3152 PF00874 PRD domain BF90_3152 PF03610 PTS system fructose IIA component BF90_3154 PF02417 Chromate transporter BF90_3155 PF04794 YdjC-like protein BF90_3156 PF11975 Family 4 glycosyl hydrolase C-terminal domain BF90_3156 PF02056 Family 4 glycosyl hydrolase BF90_3157 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF90_3158 PF02378 Phosphotransferase system, EIIC BF90_3159 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF90_316 PF12704 MacB-like periplasmic core domain BF90_316 PF02687 FtsX-like permease family BF90_316 PF00005 ABC transporter BF90_3161 PF02675 S-adenosylmethionine decarboxylase BF90_3162 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF90_3163 PF02378 Phosphotransferase system, EIIC BF90_3164 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF90_3165 PF00375 Sodium:dicarboxylate symporter family BF90_3167 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_3169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_3169 PF03466 LysR substrate binding domain BF90_317 PF09313 Domain of unknown function (DUF1971) BF90_317 PF03848 Tellurite resistance protein TehB BF90_3173 PF01654 Cytochrome bd terminal oxidase subunit I BF90_3174 PF02322 Cytochrome bd terminal oxidase subunit II BF90_3175 PF02040 Arsenical pump membrane protein BF90_3176 PF13667 ThiC-associated domain BF90_3176 PF01964 Radical SAM ThiC family BF90_3177 PF02652 L-lactate permease BF90_3179 PF09988 Uncharacterized metal-binding protein (DUF2227) BF90_3181 PF00884 Sulfatase BF90_3182 PF01063 Amino-transferase class IV BF90_3184 PF00877 NlpC/P60 family BF90_3184 PF01476 LysM domain BF90_3185 PF01773 Na+ dependent nucleoside transporter N-terminus BF90_3185 PF07662 Na+ dependent nucleoside transporter C-terminus BF90_3189 PF02028 BCCT, betaine/carnitine/choline family transporter BF90_319 PF08241 Methyltransferase domain BF90_3190 PF01476 LysM domain BF90_3190 PF06725 3D domain BF90_3195 PF04434 SWIM zinc finger BF90_3196 PF12419 SNF2 Helicase protein BF90_3196 PF00271 Helicase conserved C-terminal domain BF90_3196 PF00176 SNF2 family N-terminal domain BF90_320 PF00205 Thiamine pyrophosphate enzyme, central domain BF90_320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF90_320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF90_3202 PF04542 Sigma-70 region 2 BF90_3202 PF04545 Sigma-70, region 4 BF90_3203 PF04893 Yip1 domain BF90_3204 PF12704 MacB-like periplasmic core domain BF90_3204 PF02687 FtsX-like permease family BF90_3205 PF00005 ABC transporter BF90_3209 PF07690 Major Facilitator Superfamily BF90_321 PF12802 MarR family BF90_3212 PF00989 PAS fold BF90_3212 PF16736 Single Cache-like BF90_3212 PF00512 His Kinase A (phospho-acceptor) domain BF90_3212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3213 PF00072 Response regulator receiver domain BF90_3213 PF00486 Transcriptional regulatory protein, C terminal BF90_3214 PF16363 GDP-mannose 4,6 dehydratase BF90_3215 PF03816 Cell envelope-related transcriptional attenuator domain BF90_3216 PF07977 FabA-like domain BF90_3217 PF02350 UDP-N-acetylglucosamine 2-epimerase BF90_3218 PF00005 ABC transporter BF90_3218 PF08239 Bacterial SH3 domain BF90_3219 PF01061 ABC-2 type transporter BF90_322 PF00300 Histidine phosphatase superfamily (branch 1) BF90_3220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF90_3220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF90_3220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF90_3228 PF12116 Stage III sporulation protein D BF90_323 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BF90_3230 PF01551 Peptidase family M23 BF90_3232 PF00005 ABC transporter BF90_3233 PF04397 LytTr DNA-binding domain BF90_3233 PF00072 Response regulator receiver domain BF90_3234 PF00005 ABC transporter BF90_3235 PF08486 Stage II sporulation protein BF90_3236 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF90_3238 PF06612 Protein of unknown function (DUF1146) BF90_3239 PF00361 Proton-conducting membrane transporter BF90_3240 PF00361 Proton-conducting membrane transporter BF90_3241 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BF90_3241 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF90_3241 PF00361 Proton-conducting membrane transporter BF90_3242 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BF90_3243 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BF90_3245 PF00146 NADH dehydrogenase BF90_3246 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BF90_3247 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BF90_3248 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BF90_3249 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BF90_3250 PF00990 Diguanylate cyclase, GGDEF domain BF90_3250 PF03707 Bacterial signalling protein N terminal repeat BF90_3250 PF00563 EAL domain BF90_3253 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BF90_3253 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF90_3254 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF90_3254 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF90_3255 PF00231 ATP synthase BF90_3256 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF90_3256 PF00306 ATP synthase alpha/beta chain, C terminal domain BF90_3256 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF90_3257 PF00213 ATP synthase delta (OSCP) subunit BF90_3258 PF00430 ATP synthase B/B' CF(0) BF90_3259 PF00137 ATP synthase subunit C BF90_3260 PF00119 ATP synthase A chain BF90_3261 PF03899 ATP synthase I chain BF90_3264 PF00464 Serine hydroxymethyltransferase BF90_3265 PF04260 Protein of unknown function (DUF436) BF90_3266 PF02502 Ribose/Galactose Isomerase BF90_3267 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF90_3268 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF90_3269 PF07681 DoxX BF90_3270 PF01613 Flavin reductase like domain BF90_3272 PF02659 Putative manganese efflux pump BF90_3273 PF03481 Putative GTP-binding controlling metal-binding BF90_3273 PF01300 Telomere recombination BF90_3275 PF09551 Stage II sporulation protein R (spore_II_R) BF90_3276 PF13847 Methyltransferase domain BF90_3276 PF17827 PrmC N-terminal domain BF90_3277 PF00472 RF-1 domain BF90_3277 PF03462 PCRF domain BF90_3278 PF00265 Thymidine kinase BF90_3279 PF01197 Ribosomal protein L31 BF90_3280 PF07498 Rho termination factor, N-terminal domain BF90_3280 PF07497 Rho termination factor, RNA-binding domain BF90_3280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF90_3281 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF90_3282 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF90_3283 PF01116 Fructose-bisphosphate aldolase class-II BF90_3284 PF00072 Response regulator receiver domain BF90_3285 PF10740 Domain of unknown function (DUF2529) BF90_3286 PF00117 Glutamine amidotransferase class-I BF90_3286 PF06418 CTP synthase N-terminus BF90_3287 PF05066 HB1, ASXL, restriction endonuclease HTH domain BF90_3289 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF90_3289 PF02770 Acyl-CoA dehydrogenase, middle domain BF90_3289 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF90_329 PF07687 Peptidase dimerisation domain BF90_329 PF01546 Peptidase family M20/M25/M40 BF90_3290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF90_3290 PF02770 Acyl-CoA dehydrogenase, middle domain BF90_3290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF90_3291 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF90_3291 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF90_3292 PF02803 Thiolase, C-terminal domain BF90_3292 PF00108 Thiolase, N-terminal domain BF90_3293 PF13183 4Fe-4S dicluster domain BF90_3293 PF02754 Cysteine-rich domain BF90_3294 PF13091 PLD-like domain BF90_3295 PF03851 UV-endonuclease UvdE BF90_3296 PF03707 Bacterial signalling protein N terminal repeat BF90_3296 PF00990 Diguanylate cyclase, GGDEF domain BF90_3296 PF00563 EAL domain BF90_3300 PF00072 Response regulator receiver domain BF90_3300 PF00196 Bacterial regulatory proteins, luxR family BF90_3301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3301 PF07730 Histidine kinase BF90_3303 PF00005 ABC transporter BF90_3304 PF00557 Metallopeptidase family M24 BF90_3306 PF02324 Glycosyl hydrolase family 70 BF90_3306 PF01473 Putative cell wall binding repeat BF90_3307 PF02225 PA domain BF90_3307 PF04389 Peptidase family M28 BF90_3311 PF08281 Sigma-70, region 4 BF90_3311 PF04542 Sigma-70 region 2 BF90_3312 PF03485 Arginyl tRNA synthetase N terminal domain BF90_3312 PF05746 DALR anticodon binding domain BF90_3312 PF00750 tRNA synthetases class I (R) BF90_3313 PF09148 Domain of unknown function (DUF1934) BF90_3314 PF02016 LD-carboxypeptidase N-terminal domain BF90_3314 PF17676 LD-carboxypeptidase C-terminal domain BF90_3317 PF00491 Arginase family BF90_3318 PF17284 Spermidine synthase tetramerisation domain BF90_3319 PF07690 Major Facilitator Superfamily BF90_3320 PF13411 MerR HTH family regulatory protein BF90_3321 PF03009 Glycerophosphoryl diester phosphodiesterase family BF90_3322 PF00912 Transglycosylase BF90_3322 PF00905 Penicillin binding protein transpeptidase domain BF90_3323 PF08741 YwhD family BF90_3324 PF02163 Peptidase family M50 BF90_3325 PF01361 Tautomerase enzyme BF90_3326 PF01966 HD domain BF90_3327 PF01497 Periplasmic binding protein BF90_3328 PF00005 ABC transporter BF90_3329 PF01032 FecCD transport family BF90_333 PF08281 Sigma-70, region 4 BF90_333 PF04542 Sigma-70 region 2 BF90_3330 PF01032 FecCD transport family BF90_3331 PF07293 Protein of unknown function (DUF1450) BF90_3334 PF03099 Biotin/lipoate A/B protein ligase family BF90_3335 PF01515 Phosphate acetyl/butaryl transferase BF90_3337 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_3337 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_3338 PF07486 Cell Wall Hydrolase BF90_3339 PF09671 Spore coat protein (Spore_GerQ) BF90_3340 PF04241 Protein of unknown function (DUF423) BF90_3342 PF07885 Ion channel BF90_3342 PF02254 TrkA-N domain BF90_3343 PF00860 Permease family BF90_3345 PF12823 Domain of unknown function (DUF3817) BF90_3346 PF03167 Uracil DNA glycosylase superfamily BF90_3347 PF12679 ABC-2 family transporter protein BF90_3348 PF00005 ABC transporter BF90_3349 PF13472 GDSL-like Lipase/Acylhydrolase family BF90_335 PF00905 Penicillin binding protein transpeptidase domain BF90_335 PF03717 Penicillin-binding Protein dimerisation domain BF90_3350 PF00356 Bacterial regulatory proteins, lacI family BF90_3350 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF90_3352 PF00742 Homoserine dehydrogenase BF90_3352 PF03447 Homoserine dehydrogenase, NAD binding domain BF90_3352 PF01842 ACT domain BF90_3353 PF04204 Homoserine O-succinyltransferase BF90_3354 PF01053 Cys/Met metabolism PLP-dependent enzyme BF90_3356 PF13419 Haloacid dehalogenase-like hydrolase BF90_3357 PF00027 Cyclic nucleotide-binding domain BF90_3358 PF02525 Flavodoxin-like fold BF90_3359 PF00196 Bacterial regulatory proteins, luxR family BF90_3359 PF00072 Response regulator receiver domain BF90_3360 PF07730 Histidine kinase BF90_3360 PF13185 GAF domain BF90_3361 PF13185 GAF domain BF90_3361 PF07730 Histidine kinase BF90_3362 PF08543 Phosphomethylpyrimidine kinase BF90_3363 PF00990 Diguanylate cyclase, GGDEF domain BF90_3363 PF07694 5TMR of 5TMR-LYT BF90_3364 PF04328 Selenoprotein, putative BF90_3365 PF02554 Carbon starvation protein CstA BF90_3365 PF13722 5TM C-terminal transporter carbon starvation CstA BF90_3366 PF00072 Response regulator receiver domain BF90_3366 PF04397 LytTr DNA-binding domain BF90_3367 PF07690 Major Facilitator Superfamily BF90_3368 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF90_3371 PF03458 UPF0126 domain BF90_3372 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_3374 PF03061 Thioesterase superfamily BF90_3376 PF00535 Glycosyl transferase family 2 BF90_3377 PF12848 ABC transporter BF90_3377 PF00005 ABC transporter BF90_338 PF00356 Bacterial regulatory proteins, lacI family BF90_3382 PF00535 Glycosyl transferase family 2 BF90_3383 PF00440 Bacterial regulatory proteins, tetR family BF90_3384 PF00873 AcrB/AcrD/AcrF family BF90_3385 PF01641 SelR domain BF90_3385 PF01625 Peptide methionine sulfoxide reductase BF90_3386 PF01594 AI-2E family transporter BF90_3387 PF04172 LrgB-like family BF90_3388 PF03788 LrgA family BF90_3389 PF04397 LytTr DNA-binding domain BF90_3389 PF00072 Response regulator receiver domain BF90_339 PF07690 Major Facilitator Superfamily BF90_3390 PF13492 GAF domain BF90_3390 PF07694 5TMR of 5TMR-LYT BF90_3390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3390 PF06580 Histidine kinase BF90_3391 PF07690 Major Facilitator Superfamily BF90_3392 PF02028 BCCT, betaine/carnitine/choline family transporter BF90_3393 PF02028 BCCT, betaine/carnitine/choline family transporter BF90_3394 PF02898 Nitric oxide synthase, oxygenase domain BF90_3395 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF90_3395 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF90_3397 PF02293 AmiS/UreI family transporter BF90_3399 PF16363 GDP-mannose 4,6 dehydratase BF90_34 PF08245 Mur ligase middle domain BF90_34 PF02875 Mur ligase family, glutamate ligase domain BF90_34 PF01225 Mur ligase family, catalytic domain BF90_340 PF07690 Major Facilitator Superfamily BF90_3400 PF03006 Haemolysin-III related BF90_3402 PF03880 DbpA RNA binding domain BF90_3402 PF00270 DEAD/DEAH box helicase BF90_3402 PF00271 Helicase conserved C-terminal domain BF90_3404 PF00478 IMP dehydrogenase / GMP reductase domain BF90_3405 PF01432 Peptidase family M3 BF90_3405 PF08439 Oligopeptidase F BF90_3406 PF01432 Peptidase family M3 BF90_3406 PF08439 Oligopeptidase F BF90_3408 PF02590 Predicted SPOUT methyltransferase BF90_341 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF90_341 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF90_3410 PF13180 PDZ domain BF90_3411 PF00753 Metallo-beta-lactamase superfamily BF90_3412 PF09648 YycH protein BF90_3413 PF07435 YycH protein BF90_3414 PF00672 HAMP domain BF90_3414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3414 PF00512 His Kinase A (phospho-acceptor) domain BF90_3414 PF13426 PAS domain BF90_3415 PF00072 Response regulator receiver domain BF90_3415 PF00486 Transcriptional regulatory protein, C terminal BF90_342 PF00294 pfkB family carbohydrate kinase BF90_3420 PF00709 Adenylosuccinate synthetase BF90_3421 PF00772 DnaB-like helicase N terminal domain BF90_3421 PF03796 DnaB-like helicase C terminal domain BF90_3422 PF01281 Ribosomal protein L9, N-terminal domain BF90_3422 PF03948 Ribosomal protein L9, C-terminal domain BF90_3423 PF02272 DHHA1 domain BF90_3423 PF01368 DHH family BF90_3424 PF09991 Predicted membrane protein (DUF2232) BF90_3425 PF01084 Ribosomal protein S18 BF90_3426 PF00436 Single-strand binding protein family BF90_3427 PF01250 Ribosomal protein S6 BF90_3428 PF06071 Protein of unknown function (DUF933) BF90_3428 PF01926 50S ribosome-binding GTPase BF90_3429 PF06107 Bacterial protein of unknown function (DUF951) BF90_343 PF00171 Aldehyde dehydrogenase family BF90_3430 PF00924 Mechanosensitive ion channel BF90_3431 PF06866 Protein of unknown function (DUF1256) BF90_3432 PF02195 ParB-like nuclease domain BF90_3432 PF17762 HTH domain found in ParB protein BF90_3433 PF13614 AAA domain BF90_3434 PF17762 HTH domain found in ParB protein BF90_3434 PF02195 ParB-like nuclease domain BF90_3435 PF02527 rRNA small subunit methyltransferase G BF90_3436 PF01134 Glucose inhibited division protein A BF90_3436 PF13932 GidA associated domain BF90_3437 PF01926 50S ribosome-binding GTPase BF90_3437 PF10396 GTP-binding protein TrmE N-terminus BF90_3437 PF12631 MnmE helical domain BF90_3438 PF14804 Jag N-terminus BF90_3438 PF01424 R3H domain BF90_3439 PF02096 60Kd inner membrane protein BF90_344 PF00205 Thiamine pyrophosphate enzyme, central domain BF90_344 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF90_344 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF90_3440 PF00825 Ribonuclease P BF90_3441 PF00468 Ribosomal protein L34 BF90_3442 PF00308 Bacterial dnaA protein BF90_3442 PF08299 Bacterial dnaA protein helix-turn-helix BF90_3442 PF11638 DnaA N-terminal domain BF90_3443 PF00712 DNA polymerase III beta subunit, N-terminal domain BF90_3443 PF02767 DNA polymerase III beta subunit, central domain BF90_3443 PF02768 DNA polymerase III beta subunit, C-terminal domain BF90_3445 PF02463 RecF/RecN/SMC N terminal domain BF90_3446 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3446 PF00986 DNA gyrase B subunit, carboxyl terminus BF90_3446 PF00204 DNA gyrase B BF90_3446 PF01751 Toprim domain BF90_3447 PF03989 DNA gyrase C-terminal domain, beta-propeller BF90_3447 PF00521 DNA gyrase/topoisomerase IV, subunit A BF90_345 PF01261 Xylose isomerase-like TIM barrel BF90_3454 PF14175 YaaC-like Protein BF90_3455 PF00571 CBS domain BF90_3455 PF00478 IMP dehydrogenase / GMP reductase domain BF90_3456 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_3456 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_3457 PF01680 SOR/SNZ family BF90_3458 PF01174 SNO glutamine amidotransferase family BF90_3459 PF02403 Seryl-tRNA synthetase N-terminal domain BF90_3459 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF90_346 PF01116 Fructose-bisphosphate aldolase class-II BF90_3462 PF01712 Deoxynucleoside kinase BF90_3463 PF01712 Deoxynucleoside kinase BF90_3464 PF00857 Isochorismatase family BF90_3465 PF14437 MafB19-like deaminase BF90_3466 PF12169 DNA polymerase III subunits gamma and tau domain III BF90_3467 PF02575 YbaB/EbfC DNA-binding family BF90_3468 PF13662 Toprim domain BF90_3468 PF02132 RecR protein BF90_3469 PF10704 Protein of unknown function (DUF2508) BF90_3470 PF07441 SigmaK-factor processing regulatory protein BofA BF90_3476 PF01276 Orn/Lys/Arg decarboxylase, major domain BF90_3476 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF90_3477 PF02223 Thymidylate kinase BF90_3478 PF09115 DNA polymerase III, delta subunit, C terminal BF90_3479 PF04468 PSP1 C-terminal conserved region BF90_3480 PF06156 Initiation control protein YabA BF90_3481 PF05175 Methyltransferase small domain BF90_3482 PF01541 GIY-YIG catalytic domain BF90_3483 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF90_3484 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF90_3484 PF18277 AbrB C-terminal domain BF90_3485 PF09334 tRNA synthetases class I (M) BF90_3485 PF08264 Anticodon-binding domain of tRNA BF90_3485 PF01588 Putative tRNA binding domain BF90_3486 PF01026 TatD related DNase BF90_3487 PF13331 Domain of unknown function (DUF4093) BF90_3487 PF13662 Toprim domain BF90_3488 PF00398 Ribosomal RNA adenine dimethylase BF90_3489 PF05582 YabG peptidase U57 BF90_3490 PF06257 Biofilm formation stimulator VEG BF90_3491 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF90_3492 PF08544 GHMP kinases C terminal BF90_3492 PF00288 GHMP kinases N terminal domain BF90_3493 PF00156 Phosphoribosyl transferase domain BF90_3493 PF09182 Bacterial purine repressor, N-terminal BF90_3494 PF01042 Endoribonuclease L-PSP BF90_3495 PF04026 SpoVG BF90_3496 PF00132 Bacterial transferase hexapeptide (six repeats) BF90_3496 PF00483 Nucleotidyl transferase BF90_3497 PF14572 Phosphoribosyl synthetase-associated domain BF90_3497 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF90_3498 PF01195 Peptidyl-tRNA hydrolase BF90_35 PF01336 OB-fold nucleic acid binding domain BF90_35 PF00152 tRNA synthetases class II (D, K and N) BF90_3500 PF03461 TRCF domain BF90_3500 PF00271 Helicase conserved C-terminal domain BF90_3500 PF17757 UvrB interaction domain BF90_3500 PF00270 DEAD/DEAH box helicase BF90_3500 PF02559 CarD-like/TRCF domain BF90_3501 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF90_3501 PF15714 Stage V sporulation protein T C-terminal, transcription factor BF90_3502 PF14667 Polysaccharide biosynthesis C-terminal domain BF90_3502 PF01943 Polysaccharide biosynthesis protein BF90_3503 PF03819 MazG nucleotide pyrophosphohydrolase domain BF90_3503 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF90_3504 PF01479 S4 domain BF90_3505 PF07873 YabP family BF90_3506 PF09578 Spore cortex protein YabQ (Spore_YabQ) BF90_3508 PF00575 S1 RNA binding domain BF90_351 PF00149 Calcineurin-like phosphoesterase BF90_351 PF02872 5'-nucleotidase, C-terminal domain BF90_3511 PF07228 Stage II sporulation protein E (SpoIIE) BF90_3512 PF09179 TilS substrate binding domain BF90_3512 PF11734 TilS substrate C-terminal domain BF90_3512 PF01171 PP-loop family BF90_3514 PF01434 Peptidase family M41 BF90_3514 PF00004 ATPase family associated with various cellular activities (AAA) BF90_3514 PF17862 AAA+ lid domain BF90_3514 PF06480 FtsH Extracellular BF90_3515 PF03309 Type III pantothenate kinase BF90_3516 PF01430 Hsp33 protein BF90_3517 PF00291 Pyridoxal-phosphate dependent enzyme BF90_3518 PF04715 Anthranilate synthase component I, N terminal region BF90_3518 PF00425 chorismate binding enzyme BF90_3519 PF00117 Glutamine amidotransferase class-I BF90_3520 PF01063 Amino-transferase class IV BF90_3521 PF00809 Pterin binding enzyme BF90_3522 PF02152 Dihydroneopterin aldolase BF90_3523 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF90_3524 PF01381 Helix-turn-helix BF90_3525 PF01207 Dihydrouridine synthase (Dus) BF90_3526 PF01336 OB-fold nucleic acid binding domain BF90_3526 PF00152 tRNA synthetases class II (D, K and N) BF90_353 PF18801 response regulator aspartate phosphatase H, N terminal BF90_3531 PF17727 CtsR C-terminal dimerization domain BF90_3531 PF05848 CtsR N-terminal HTH domain BF90_3532 PF02151 UvrB/uvrC motif BF90_3533 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BF90_3534 PF00004 ATPase family associated with various cellular activities (AAA) BF90_3534 PF07724 AAA domain (Cdc48 subfamily) BF90_3534 PF10431 C-terminal, D2-small domain, of ClpB protein BF90_3534 PF17871 AAA lid domain BF90_3534 PF02861 Clp amino terminal domain, pathogenicity island component BF90_3535 PF18073 Rubredoxin metal binding domain BF90_3536 PF10635 DisA bacterial checkpoint controller linker region BF90_3536 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF90_3538 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF90_3539 PF02542 YgbB family BF90_354 PF01381 Helix-turn-helix BF90_3540 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF90_3541 PF00132 Bacterial transferase hexapeptide (six repeats) BF90_3541 PF06426 Serine acetyltransferase, N-terminal BF90_3542 PF01406 tRNA synthetases class I (C) catalytic domain BF90_3542 PF09190 DALR domain BF90_3543 PF00636 Ribonuclease III domain BF90_3544 PF00588 SpoU rRNA Methylase family BF90_3544 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF90_3545 PF05991 YacP-like NYN domain BF90_3546 PF04542 Sigma-70 region 2 BF90_3546 PF08281 Sigma-70, region 4 BF90_3547 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BF90_3548 PF00467 KOW motif BF90_3548 PF02357 Transcription termination factor nusG BF90_3549 PF03946 Ribosomal protein L11, N-terminal domain BF90_3549 PF00298 Ribosomal protein L11, RNA binding domain BF90_3550 PF00687 Ribosomal protein L1p/L10e family BF90_3551 PF00466 Ribosomal protein L10 BF90_3552 PF00542 Ribosomal protein L7/L12 C-terminal domain BF90_3552 PF16320 Ribosomal protein L7/L12 dimerisation domain BF90_3553 PF05175 Methyltransferase small domain BF90_3554 PF04563 RNA polymerase beta subunit BF90_3554 PF10385 RNA polymerase beta subunit external 1 domain BF90_3554 PF00562 RNA polymerase Rpb2, domain 6 BF90_3554 PF04565 RNA polymerase Rpb2, domain 3 BF90_3554 PF04560 RNA polymerase Rpb2, domain 7 BF90_3554 PF04561 RNA polymerase Rpb2, domain 2 BF90_3555 PF04998 RNA polymerase Rpb1, domain 5 BF90_3555 PF04997 RNA polymerase Rpb1, domain 1 BF90_3555 PF00623 RNA polymerase Rpb1, domain 2 BF90_3555 PF04983 RNA polymerase Rpb1, domain 3 BF90_3555 PF05000 RNA polymerase Rpb1, domain 4 BF90_3556 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF90_3557 PF00164 Ribosomal protein S12/S23 BF90_3558 PF00177 Ribosomal protein S7p/S5e BF90_3559 PF03144 Elongation factor Tu domain 2 BF90_3559 PF00009 Elongation factor Tu GTP binding domain BF90_3559 PF03764 Elongation factor G, domain IV BF90_3559 PF14492 Elongation Factor G, domain II BF90_3559 PF00679 Elongation factor G C-terminus BF90_3560 PF03144 Elongation factor Tu domain 2 BF90_3560 PF00009 Elongation factor Tu GTP binding domain BF90_3560 PF03143 Elongation factor Tu C-terminal domain BF90_3561 PF00338 Ribosomal protein S10p/S20e BF90_3562 PF00297 Ribosomal protein L3 BF90_3563 PF00573 Ribosomal protein L4/L1 family BF90_3564 PF00276 Ribosomal protein L23 BF90_3565 PF03947 Ribosomal Proteins L2, C-terminal domain BF90_3565 PF00181 Ribosomal Proteins L2, RNA binding domain BF90_3566 PF00203 Ribosomal protein S19 BF90_3567 PF00237 Ribosomal protein L22p/L17e BF90_3568 PF00189 Ribosomal protein S3, C-terminal domain BF90_3568 PF07650 KH domain BF90_3569 PF00252 Ribosomal protein L16p/L10e BF90_357 PF02557 D-alanyl-D-alanine carboxypeptidase BF90_3570 PF00831 Ribosomal L29 protein BF90_3571 PF00366 Ribosomal protein S17 BF90_3572 PF00238 Ribosomal protein L14p/L23e BF90_3573 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BF90_3573 PF00467 KOW motif BF90_3574 PF00281 Ribosomal protein L5 BF90_3574 PF00673 ribosomal L5P family C-terminus BF90_3575 PF00253 Ribosomal protein S14p/S29e BF90_3576 PF00410 Ribosomal protein S8 BF90_3577 PF00347 Ribosomal protein L6 BF90_3578 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BF90_3579 PF00333 Ribosomal protein S5, N-terminal domain BF90_3579 PF03719 Ribosomal protein S5, C-terminal domain BF90_3580 PF00327 Ribosomal protein L30p/L7e BF90_3581 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BF90_3582 PF00344 SecY translocase BF90_3583 PF05191 Adenylate kinase, active site lid BF90_3584 PF00557 Metallopeptidase family M24 BF90_3585 PF01176 Translation initiation factor 1A / IF-1 BF90_3586 PF00444 Ribosomal protein L36 BF90_3587 PF00416 Ribosomal protein S13/S18 BF90_3588 PF00411 Ribosomal protein S11 BF90_3589 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF90_3589 PF01000 RNA polymerase Rpb3/RpoA insert domain BF90_3589 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF90_359 PF00395 S-layer homology domain BF90_359 PF01520 N-acetylmuramoyl-L-alanine amidase BF90_3590 PF01196 Ribosomal protein L17 BF90_3591 PF00005 ABC transporter BF90_3592 PF00005 ABC transporter BF90_3593 PF02361 Cobalt transport protein BF90_3594 PF01416 tRNA pseudouridine synthase BF90_3595 PF00572 Ribosomal protein L13 BF90_3596 PF00380 Ribosomal protein S9/S16 BF90_3598 PF01520 N-acetylmuramoyl-L-alanine amidase BF90_3599 PF10609 NUBPL iron-transfer P-loop NTPase BF90_3600 PF17898 Spore germination GerD central core domain BF90_3601 PF14089 KinB-signalling pathway activation in sporulation BF90_3602 PF01522 Polysaccharide deacetylase BF90_3617 PF02595 Glycerate kinase family BF90_3618 PF02595 Glycerate kinase family BF90_3619 PF00491 Arginase family BF90_362 PF00440 Bacterial regulatory proteins, tetR family BF90_3620 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF90_3621 PF07949 YbbR-like protein BF90_3622 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF90_3622 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF90_3622 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF90_3622 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF90_3623 PF01380 SIS domain BF90_3624 PF00561 alpha/beta hydrolase fold BF90_3625 PF00392 Bacterial regulatory proteins, gntR family BF90_3625 PF07729 FCD domain BF90_3626 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF90_3626 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF90_3627 PF02447 GntP family permease BF90_3628 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF90_3628 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF90_3629 PF07676 WD40-like Beta Propeller Repeat BF90_3629 PF00326 Prolyl oligopeptidase family BF90_3637 PF00528 Binding-protein-dependent transport system inner membrane component BF90_3638 PF00005 ABC transporter BF90_3638 PF09383 NIL domain BF90_3639 PF03180 NLPA lipoprotein BF90_3642 PF01565 FAD binding domain BF90_3643 PF01565 FAD binding domain BF90_3644 PF07690 Major Facilitator Superfamily BF90_3646 PF07690 Major Facilitator Superfamily BF90_3649 PF00528 Binding-protein-dependent transport system inner membrane component BF90_365 PF00563 EAL domain BF90_365 PF03707 Bacterial signalling protein N terminal repeat BF90_365 PF00990 Diguanylate cyclase, GGDEF domain BF90_3650 PF12911 N-terminal TM domain of oligopeptide transport permease C BF90_3650 PF00528 Binding-protein-dependent transport system inner membrane component BF90_3651 PF00005 ABC transporter BF90_3651 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_3652 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_3652 PF00005 ABC transporter BF90_3653 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_3655 PF12833 Helix-turn-helix domain BF90_3658 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_3659 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_366 PF13302 Acetyltransferase (GNAT) domain BF90_3660 PF00248 Aldo/keto reductase family BF90_3661 PF03807 NADP oxidoreductase coenzyme F420-dependent BF90_3661 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF90_3662 PF04973 Nicotinamide mononucleotide transporter BF90_3663 PF06800 Sugar transport protein BF90_3664 PF00528 Binding-protein-dependent transport system inner membrane component BF90_3666 PF12727 PBP superfamily domain BF90_3666 PF12728 Helix-turn-helix domain BF90_3669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_3669 PF03466 LysR substrate binding domain BF90_3670 PF00892 EamA-like transporter family BF90_3671 PF14142 YrzO-like protein BF90_3673 PF01553 Acyltransferase BF90_3675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF90_3675 PF00356 Bacterial regulatory proteins, lacI family BF90_3677 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_3677 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_3680 PF01026 TatD related DNase BF90_3681 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BF90_3685 PF12848 ABC transporter BF90_3685 PF00005 ABC transporter BF90_3685 PF16326 ABC transporter C-terminal domain BF90_3688 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_3689 PF00528 Binding-protein-dependent transport system inner membrane component BF90_3691 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_3691 PF00005 ABC transporter BF90_3692 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_3692 PF00005 ABC transporter BF90_3699 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_370 PF00581 Rhodanese-like domain BF90_3700 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF90_3702 PF07690 Major Facilitator Superfamily BF90_3703 PF07478 D-ala D-ala ligase C-terminus BF90_3703 PF01820 D-ala D-ala ligase N-terminus BF90_3704 PF01820 D-ala D-ala ligase N-terminus BF90_3704 PF07478 D-ala D-ala ligase C-terminus BF90_3705 PF08245 Mur ligase middle domain BF90_3705 PF02875 Mur ligase family, glutamate ligase domain BF90_3705 PF01225 Mur ligase family, catalytic domain BF90_3706 PF00270 DEAD/DEAH box helicase BF90_3706 PF00271 Helicase conserved C-terminal domain BF90_3707 PF01694 Rhomboid family BF90_3708 PF03851 UV-endonuclease UvdE BF90_3709 PF01648 4'-phosphopantetheinyl transferase superfamily BF90_3711 PF01168 Alanine racemase, N-terminal domain BF90_3711 PF00842 Alanine racemase, C-terminal domain BF90_3712 PF01402 Ribbon-helix-helix protein, copG family BF90_3713 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BF90_3714 PF17674 HHH domain BF90_3714 PF09371 Tex-like protein N-terminal domain BF90_3714 PF16921 Tex protein YqgF-like domain BF90_3714 PF00575 S1 RNA binding domain BF90_3715 PF17283 SprT-like zinc ribbon domain BF90_3715 PF10263 SprT-like family BF90_373 PF00005 ABC transporter BF90_3733 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BF90_3734 PF00814 Glycoprotease family BF90_3735 PF00583 Acetyltransferase (GNAT) family BF90_3736 PF00814 Glycoprotease family BF90_3737 PF00005 ABC transporter BF90_3737 PF16326 ABC transporter C-terminal domain BF90_3737 PF12848 ABC transporter BF90_3738 PF06971 Putative DNA-binding protein N-terminus BF90_3738 PF02629 CoA binding domain BF90_3740 PF02517 CPBP intramembrane metalloprotease BF90_3741 PF00166 Chaperonin 10 Kd subunit BF90_3742 PF00118 TCP-1/cpn60 chaperonin family BF90_3743 PF02540 NAD synthase BF90_3743 PF00958 GMP synthase C terminal domain BF90_3743 PF00117 Glutamine amidotransferase class-I BF90_3744 PF00860 Permease family BF90_3745 PF00072 Response regulator receiver domain BF90_3745 PF00486 Transcriptional regulatory protein, C terminal BF90_3746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3746 PF00512 His Kinase A (phospho-acceptor) domain BF90_3746 PF16736 Single Cache-like BF90_3746 PF00989 PAS fold BF90_375 PF00440 Bacterial regulatory proteins, tetR family BF90_375 PF08359 YsiA-like protein, C-terminal region BF90_3751 PF02673 Bacitracin resistance protein BacA BF90_3753 PF00005 ABC transporter BF90_3754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3754 PF00512 His Kinase A (phospho-acceptor) domain BF90_3755 PF00072 Response regulator receiver domain BF90_3755 PF00486 Transcriptional regulatory protein, C terminal BF90_3760 PF00731 AIR carboxylase BF90_3761 PF02222 ATP-grasp domain BF90_3761 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BF90_3762 PF00206 Lyase BF90_3762 PF10397 Adenylosuccinate lyase C-terminus BF90_3763 PF01259 SAICAR synthetase BF90_3764 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BF90_3766 PF00586 AIR synthase related protein, N-terminal domain BF90_3766 PF02769 AIR synthase related protein, C-terminal domain BF90_3766 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BF90_3767 PF00156 Phosphoribosyl transferase domain BF90_3768 PF00586 AIR synthase related protein, N-terminal domain BF90_3768 PF02769 AIR synthase related protein, C-terminal domain BF90_3769 PF00551 Formyl transferase BF90_3770 PF01808 AICARFT/IMPCHase bienzyme BF90_3770 PF02142 MGS-like domain BF90_3771 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF90_3771 PF02844 Phosphoribosylglycinamide synthetase, N domain BF90_3771 PF02843 Phosphoribosylglycinamide synthetase, C domain BF90_3775 PF01884 PcrB family BF90_3776 PF00580 UvrD/REP helicase N-terminal domain BF90_3776 PF13361 UvrD-like helicase C-terminal domain BF90_3777 PF03120 NAD-dependent DNA ligase OB-fold domain BF90_3777 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF90_3777 PF12826 Helix-hairpin-helix motif BF90_3777 PF01653 NAD-dependent DNA ligase adenylation domain BF90_3777 PF00533 BRCA1 C Terminus (BRCT) domain BF90_3778 PF07537 CamS sex pheromone cAM373 precursor BF90_3779 PF01925 Sulfite exporter TauE/SafE BF90_378 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF90_378 PF02770 Acyl-CoA dehydrogenase, middle domain BF90_378 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF90_3780 PF00171 Aldehyde dehydrogenase family BF90_3782 PF00857 Isochorismatase family BF90_3783 PF09383 NIL domain BF90_3783 PF00005 ABC transporter BF90_3784 PF00528 Binding-protein-dependent transport system inner membrane component BF90_3785 PF03180 NLPA lipoprotein BF90_3788 PF17886 HSP20-like domain found in ArsA BF90_3788 PF02374 Anion-transporting ATPase BF90_3789 PF02374 Anion-transporting ATPase BF90_3789 PF17886 HSP20-like domain found in ArsA BF90_379 PF02785 Biotin carboxylase C-terminal domain BF90_379 PF00289 Biotin carboxylase, N-terminal domain BF90_379 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF90_3790 PF01047 MarR family BF90_3791 PF05360 yiaA/B two helix domain BF90_3792 PF02686 Glu-tRNAGln amidotransferase C subunit BF90_3793 PF01425 Amidase BF90_3794 PF02934 GatB/GatE catalytic domain BF90_3794 PF02637 GatB domain BF90_3795 PF00781 Diacylglycerol kinase catalytic domain BF90_3796 PF13419 Haloacid dehalogenase-like hydrolase BF90_3797 PF00202 Aminotransferase class-III BF90_3798 PF00158 Sigma-54 interaction domain BF90_3799 PF00171 Aldehyde dehydrogenase family BF90_380 PF00364 Biotin-requiring enzyme BF90_3800 PF00893 Small Multidrug Resistance protein BF90_3801 PF02073 Thermophilic metalloprotease (M29) BF90_3804 PF01773 Na+ dependent nucleoside transporter N-terminus BF90_3804 PF07662 Na+ dependent nucleoside transporter C-terminus BF90_3804 PF07670 Nucleoside recognition BF90_3805 PF05958 tRNA (Uracil-5-)-methyltransferase BF90_3805 PF01938 TRAM domain BF90_3805 PF02475 Met-10+ like-protein BF90_3806 PF01207 Dihydrouridine synthase (Dus) BF90_3808 PF07308 Protein of unknown function (DUF1456) BF90_381 PF00682 HMGL-like BF90_3811 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF90_3811 PF13378 Enolase C-terminal domain-like BF90_3814 PF01546 Peptidase family M20/M25/M40 BF90_3814 PF07687 Peptidase dimerisation domain BF90_3816 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_3816 PF13192 Thioredoxin domain BF90_3817 PF00578 AhpC/TSA family BF90_3818 PF01636 Phosphotransferase enzyme family BF90_382 PF00378 Enoyl-CoA hydratase/isomerase BF90_3820 PF00596 Class II Aldolase and Adducin N-terminal domain BF90_3821 PF01032 FecCD transport family BF90_3822 PF01032 FecCD transport family BF90_3823 PF01497 Periplasmic binding protein BF90_3824 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_3826 PF12728 Helix-turn-helix domain BF90_383 PF01039 Carboxyl transferase domain BF90_3832 PF00512 His Kinase A (phospho-acceptor) domain BF90_3832 PF13188 PAS domain BF90_3832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_3832 PF13426 PAS domain BF90_3832 PF00989 PAS fold BF90_3836 PF10127 RNA repair pathway DNA polymerase beta family BF90_3837 PF07690 Major Facilitator Superfamily BF90_3838 PF01266 FAD dependent oxidoreductase BF90_3838 PF00355 Rieske [2Fe-2S] domain BF90_384 PF00501 AMP-binding enzyme BF90_384 PF16177 Acetyl-coenzyme A synthetase N-terminus BF90_384 PF13193 AMP-binding enzyme C-terminal domain BF90_3840 PF00528 Binding-protein-dependent transport system inner membrane component BF90_3841 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF90_3842 PF00005 ABC transporter BF90_3843 PF00672 HAMP domain BF90_3843 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_3843 PF12729 Four helix bundle sensory module for signal transduction BF90_3844 PF12729 Four helix bundle sensory module for signal transduction BF90_3844 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_3844 PF00672 HAMP domain BF90_3845 PF16657 Maltogenic Amylase, C-terminal domain BF90_3845 PF00128 Alpha amylase, catalytic domain BF90_3846 PF00367 phosphotransferase system, EIIB BF90_3846 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF90_3846 PF02378 Phosphotransferase system, EIIC BF90_3847 PF03372 Endonuclease/Exonuclease/phosphatase family BF90_3848 PF01061 ABC-2 type transporter BF90_3849 PF01131 DNA topoisomerase BF90_3849 PF01751 Toprim domain BF90_3850 PF02110 Hydroxyethylthiazole kinase family BF90_3851 PF02581 Thiamine monophosphate synthase BF90_3852 PF03605 Anaerobic c4-dicarboxylate membrane transporter BF90_3853 PF00672 HAMP domain BF90_3853 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_3854 PF01910 Thiamine-binding protein BF90_3855 PF00528 Binding-protein-dependent transport system inner membrane component BF90_3857 PF00005 ABC transporter BF90_3858 PF00005 ABC transporter BF90_3858 PF12848 ABC transporter BF90_3859 PF00704 Glycosyl hydrolases family 18 BF90_3859 PF00041 Fibronectin type III domain BF90_386 PF00583 Acetyltransferase (GNAT) family BF90_3860 PF00704 Glycosyl hydrolases family 18 BF90_3860 PF00041 Fibronectin type III domain BF90_3864 PF00440 Bacterial regulatory proteins, tetR family BF90_3864 PF08360 QacR-like protein, C-terminal region BF90_3868 PF11700 Vacuole effluxer Atg22 like BF90_387 PF00485 Phosphoribulokinase / Uridine kinase family BF90_3871 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF90_3871 PF03129 Anticodon binding domain BF90_3871 PF09180 Prolyl-tRNA synthetase, C-terminal BF90_3873 PF00480 ROK family BF90_3874 PF02342 TerD domain BF90_3875 PF02342 TerD domain BF90_3876 PF02342 TerD domain BF90_3877 PF03741 Integral membrane protein TerC family BF90_3878 PF14266 Putative component of 'biosynthetic module' BF90_3879 PF05816 Toxic anion resistance protein (TelA) BF90_3880 PF00689 Cation transporting ATPase, C-terminus BF90_3880 PF00690 Cation transporter/ATPase, N-terminus BF90_3881 PF06569 Protein of unknown function (DUF1128) BF90_3882 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF90_3884 PF03631 Virulence factor BrkB BF90_3886 PF00892 EamA-like transporter family BF90_3888 PF10502 Signal peptidase, peptidase S26 BF90_389 PF05163 DinB family BF90_3890 PF09335 SNARE associated Golgi protein BF90_3893 PF16242 Pyridoxamine 5'-phosphate oxidase like BF90_3894 PF01699 Sodium/calcium exchanger protein BF90_3895 PF14167 YfkD-like protein BF90_3896 PF08756 YfkB-like domain BF90_3896 PF04055 Radical SAM superfamily BF90_3898 PF05683 Fumarase C-terminus BF90_3898 PF05681 Fumarate hydratase (Fumerase) BF90_3899 PF01522 Polysaccharide deacetylase BF90_39 PF12538 DNA transporter BF90_39 PF01580 FtsK/SpoIIIE family BF90_390 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_390 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_3901 PF00730 HhH-GPD superfamily base excision DNA repair protein BF90_3902 PF01938 TRAM domain BF90_3902 PF05958 tRNA (Uracil-5-)-methyltransferase BF90_3903 PF14659 Phage integrase, N-terminal SAM-like domain BF90_3903 PF00589 Phage integrase family BF90_3907 PF01381 Helix-turn-helix BF90_391 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_391 PF00512 His Kinase A (phospho-acceptor) domain BF90_3914 PF07319 Primosomal protein DnaI N-terminus BF90_3914 PF01695 IstB-like ATP binding protein BF90_392 PF00072 Response regulator receiver domain BF90_392 PF00486 Transcriptional regulatory protein, C terminal BF90_393 PF01966 HD domain BF90_3935 PF00589 Phage integrase family BF90_3936 PF00589 Phage integrase family BF90_394 PF13021 Domain of unknown function (DUF3885) BF90_395 PF01048 Phosphorylase superfamily BF90_3960 PF01183 Glycosyl hydrolases family 25 BF90_3962 PF01416 tRNA pseudouridine synthase BF90_3964 PF00158 Sigma-54 interaction domain BF90_3964 PF13426 PAS domain BF90_3964 PF02954 Bacterial regulatory protein, Fis family BF90_3966 PF00324 Amino acid permease BF90_3967 PF01546 Peptidase family M20/M25/M40 BF90_3967 PF07687 Peptidase dimerisation domain BF90_3972 PF04960 Glutaminase BF90_3973 PF02378 Phosphotransferase system, EIIC BF90_3973 PF00367 phosphotransferase system, EIIB BF90_3974 PF00144 Beta-lactamase BF90_3977 PF00535 Glycosyl transferase family 2 BF90_3978 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF90_3978 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF90_3978 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF90_3979 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF90_3979 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF90_3979 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF90_3980 PF02911 Formyl transferase, C-terminal domain BF90_3980 PF00551 Formyl transferase BF90_3980 PF01370 NAD dependent epimerase/dehydratase family BF90_3981 PF00535 Glycosyl transferase family 2 BF90_3982 PF01228 Glycine radical BF90_3982 PF02901 Pyruvate formate lyase-like BF90_3983 PF04055 Radical SAM superfamily BF90_3984 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF90_3984 PF04101 Glycosyltransferase family 28 C-terminal domain BF90_3987 PF01979 Amidohydrolase family BF90_3988 PF01370 NAD dependent epimerase/dehydratase family BF90_3988 PF08338 Domain of unknown function (DUF1731) BF90_3989 PF02631 RecX family BF90_399 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF90_399 PF07504 Fungalysin/Thermolysin Propeptide Motif BF90_399 PF01447 Thermolysin metallopeptidase, catalytic domain BF90_399 PF03413 Peptidase propeptide and YPEB domain BF90_3992 PF08176 Small acid-soluble spore protein K family BF90_3993 PF14043 WVELL protein BF90_3994 PF04307 LexA-binding, inner membrane-associated putative hydrolase BF90_3995 PF00730 HhH-GPD superfamily base excision DNA repair protein BF90_3995 PF14815 NUDIX domain BF90_3997 PF04259 Small, acid-soluble spore protein, gamma-type BF90_3998 PF14182 YgaB-like protein BF90_3999 PF04167 Protein of unknown function (DUF402) BF90_400 PF03413 Peptidase propeptide and YPEB domain BF90_400 PF01447 Thermolysin metallopeptidase, catalytic domain BF90_400 PF07504 Fungalysin/Thermolysin Propeptide Motif BF90_400 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF90_4000 PF00664 ABC transporter transmembrane region BF90_4000 PF00005 ABC transporter BF90_4001 PF06081 Aromatic acid exporter family member 1 BF90_4002 PF00310 Glutamine amidotransferases class-II BF90_4002 PF04898 Glutamate synthase central domain BF90_4002 PF01645 Conserved region in glutamate synthase BF90_4002 PF01493 GXGXG motif BF90_4003 PF00202 Aminotransferase class-III BF90_4004 PF00005 ABC transporter BF90_4007 PF07885 Ion channel BF90_4008 PF00578 AhpC/TSA family BF90_4009 PF01475 Ferric uptake regulator family BF90_4010 PF11023 Zinc-ribbon containing domain BF90_4032 PF01709 Transcriptional regulator BF90_4033 PF13344 Haloacid dehalogenase-like hydrolase BF90_4033 PF00293 NUDIX domain BF90_4034 PF00905 Penicillin binding protein transpeptidase domain BF90_4034 PF00912 Transglycosylase BF90_4035 PF13462 Thioredoxin BF90_4037 PF08331 Domain of unknown function (DUF1730) BF90_4038 PF12671 Putative amidase domain BF90_4039 PF00588 SpoU rRNA Methylase family BF90_404 PF17760 UvrA interaction domain BF90_404 PF17755 UvrA DNA-binding domain BF90_404 PF17760 UvrA interaction domain BF90_404 PF17755 UvrA DNA-binding domain BF90_4040 PF00563 EAL domain BF90_4040 PF03707 Bacterial signalling protein N terminal repeat BF90_4040 PF00990 Diguanylate cyclase, GGDEF domain BF90_4042 PF08298 PrkA AAA domain BF90_4042 PF06798 PrkA serine protein kinase C-terminal domain BF90_4043 PF04285 Protein of unknown function (DUF444) BF90_4046 PF02028 BCCT, betaine/carnitine/choline family transporter BF90_4047 PF18496 Collagenase G catalytic helper subdomain BF90_4047 PF01752 Collagenase BF90_4047 PF08453 Peptidase family M9 N-terminal BF90_4049 PF15975 Flotillin BF90_4049 PF01145 SPFH domain / Band 7 family BF90_4050 PF02743 Cache domain BF90_4050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_4050 PF00672 HAMP domain BF90_4051 PF17203 Single cache domain 3 BF90_4051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4051 PF00989 PAS fold BF90_4051 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF90_4052 PF08279 HTH domain BF90_4052 PF00072 Response regulator receiver domain BF90_4052 PF12431 Transcriptional regulator BF90_4053 PF03600 Citrate transporter BF90_4057 PF04309 Glycerol-3-phosphate responsive antiterminator BF90_4058 PF00005 ABC transporter BF90_4058 PF17912 MalK OB fold domain BF90_4059 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4060 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4061 PF13416 Bacterial extracellular solute-binding protein BF90_4063 PF00486 Transcriptional regulatory protein, C terminal BF90_4063 PF00072 Response regulator receiver domain BF90_4064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4064 PF00512 His Kinase A (phospho-acceptor) domain BF90_4066 PF13529 Peptidase_C39 like family BF90_4067 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_4067 PF02743 Cache domain BF90_4067 PF00672 HAMP domain BF90_4068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4068 PF00989 PAS fold BF90_4068 PF17203 Single cache domain 3 BF90_4068 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF90_4069 PF00072 Response regulator receiver domain BF90_407 PF00144 Beta-lactamase BF90_4070 PF03390 2-hydroxycarboxylate transporter family BF90_4071 PF00390 Malic enzyme, N-terminal domain BF90_4071 PF03949 Malic enzyme, NAD binding domain BF90_4073 PF00892 EamA-like transporter family BF90_4074 PF00155 Aminotransferase class I and II BF90_4074 PF00392 Bacterial regulatory proteins, gntR family BF90_4076 PF00512 His Kinase A (phospho-acceptor) domain BF90_4076 PF00989 PAS fold BF90_4076 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4076 PF18698 Histidine kinase sensor domain BF90_4076 PF00672 HAMP domain BF90_4077 PF00072 Response regulator receiver domain BF90_4077 PF00486 Transcriptional regulatory protein, C terminal BF90_4079 PF13508 Acetyltransferase (GNAT) domain BF90_4079 PF00583 Acetyltransferase (GNAT) family BF90_408 PF00376 MerR family regulatory protein BF90_408 PF09278 MerR, DNA binding BF90_4080 PF02634 FdhD/NarQ family BF90_4081 PF01568 Molydopterin dinucleotide binding domain BF90_4081 PF00384 Molybdopterin oxidoreductase BF90_4081 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF90_4081 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF90_4081 PF00037 4Fe-4S binding domain BF90_4083 PF07849 Protein of unknown function (DUF1641) BF90_4085 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF90_4085 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF90_4086 PF13520 Amino acid permease BF90_4087 PF01022 Bacterial regulatory protein, arsR family BF90_4088 PF00403 Heavy-metal-associated domain BF90_4089 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BF90_4089 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BF90_4089 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF90_409 PF07690 Major Facilitator Superfamily BF90_4092 PF03413 Peptidase propeptide and YPEB domain BF90_4092 PF01447 Thermolysin metallopeptidase, catalytic domain BF90_4092 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF90_4092 PF07504 Fungalysin/Thermolysin Propeptide Motif BF90_4096 PF04294 VanW like protein BF90_4097 PF03816 Cell envelope-related transcriptional attenuator domain BF90_4098 PF01773 Na+ dependent nucleoside transporter N-terminus BF90_4098 PF07662 Na+ dependent nucleoside transporter C-terminus BF90_4099 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_4100 PF03471 Transporter associated domain BF90_4100 PF01595 Cyclin M transmembrane N-terminal domain BF90_4100 PF00571 CBS domain BF90_4101 PF00206 Lyase BF90_4101 PF10415 Fumarase C C-terminus BF90_4102 PF02652 L-lactate permease BF90_4103 PF01022 Bacterial regulatory protein, arsR family BF90_4104 PF08141 Small acid-soluble spore protein H family BF90_4105 PF00854 POT family BF90_4106 PF01497 Periplasmic binding protein BF90_4107 PF01032 FecCD transport family BF90_4108 PF01032 FecCD transport family BF90_4109 PF00005 ABC transporter BF90_4110 PF08241 Methyltransferase domain BF90_4111 PF00155 Aminotransferase class I and II BF90_4112 PF01370 NAD dependent epimerase/dehydratase family BF90_4113 PF13344 Haloacid dehalogenase-like hydrolase BF90_4113 PF00293 NUDIX domain BF90_4114 PF00092 von Willebrand factor type A domain BF90_4115 PF07728 AAA domain (dynein-related subfamily) BF90_4116 PF13091 PLD-like domain BF90_4116 PF13396 Phospholipase_D-nuclease N-terminal BF90_4119 PF03707 Bacterial signalling protein N terminal repeat BF90_4119 PF00990 Diguanylate cyclase, GGDEF domain BF90_4119 PF00563 EAL domain BF90_4120 PF13520 Amino acid permease BF90_4121 PF07702 UTRA domain BF90_4121 PF00392 Bacterial regulatory proteins, gntR family BF90_4122 PF00367 phosphotransferase system, EIIB BF90_4122 PF02378 Phosphotransferase system, EIIC BF90_4123 PF00128 Alpha amylase, catalytic domain BF90_4123 PF16657 Maltogenic Amylase, C-terminal domain BF90_4126 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_4128 PF01636 Phosphotransferase enzyme family BF90_4129 PF01235 Sodium:alanine symporter family BF90_413 PF01636 Phosphotransferase enzyme family BF90_4130 PF00005 ABC transporter BF90_4131 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF90_4132 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4133 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4134 PF00324 Amino acid permease BF90_4139 PF08279 HTH domain BF90_4139 PF13280 WYL domain BF90_414 PF12833 Helix-turn-helix domain BF90_4140 PF01872 RibD C-terminal domain BF90_4141 PF00672 HAMP domain BF90_4141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4141 PF18698 Histidine kinase sensor domain BF90_4141 PF00512 His Kinase A (phospho-acceptor) domain BF90_4141 PF00989 PAS fold BF90_4142 PF00072 Response regulator receiver domain BF90_4142 PF00486 Transcriptional regulatory protein, C terminal BF90_4144 PF01740 STAS domain BF90_4144 PF00916 Sulfate permease family BF90_4145 PF00582 Universal stress protein family BF90_4147 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_4148 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4149 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4150 PF00005 ABC transporter BF90_4150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_4151 PF00005 ABC transporter BF90_4151 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_4152 PF07690 Major Facilitator Superfamily BF90_4153 PF01047 MarR family BF90_4154 PF07690 Major Facilitator Superfamily BF90_4155 PF07690 Major Facilitator Superfamily BF90_4156 PF00356 Bacterial regulatory proteins, lacI family BF90_4157 PF00294 pfkB family carbohydrate kinase BF90_4158 PF05025 RbsD / FucU transport protein family BF90_4159 PF00005 ABC transporter BF90_4160 PF02653 Branched-chain amino acid transport system / permease component BF90_4161 PF13407 Periplasmic binding protein domain BF90_4162 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF90_4163 PF05547 Immune inhibitor A peptidase M6 BF90_4166 PF08240 Alcohol dehydrogenase GroES-like domain BF90_4166 PF00107 Zinc-binding dehydrogenase BF90_4168 PF00882 Zinc dependent phospholipase C BF90_4169 PF03372 Endonuclease/Exonuclease/phosphatase family BF90_417 PF00392 Bacterial regulatory proteins, gntR family BF90_417 PF00155 Aminotransferase class I and II BF90_4174 PF02673 Bacitracin resistance protein BacA BF90_4175 PF00672 HAMP domain BF90_4175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_4175 PF02743 Cache domain BF90_4176 PF01476 LysM domain BF90_4176 PF06725 3D domain BF90_4177 PF01381 Helix-turn-helix BF90_4179 PF04203 Sortase domain BF90_4180 PF00854 POT family BF90_4181 PF05525 Branched-chain amino acid transport protein BF90_4184 PF00324 Amino acid permease BF90_4185 PF00860 Permease family BF90_419 PF08240 Alcohol dehydrogenase GroES-like domain BF90_419 PF00107 Zinc-binding dehydrogenase BF90_4190 PF02254 TrkA-N domain BF90_4190 PF02080 TrkA-C domain BF90_4190 PF00999 Sodium/hydrogen exchanger family BF90_4192 PF00510 Cytochrome c oxidase subunit III BF90_4193 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF90_4194 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF90_4195 PF13529 Peptidase_C39 like family BF90_4196 PF01546 Peptidase family M20/M25/M40 BF90_4196 PF07687 Peptidase dimerisation domain BF90_4197 PF11755 Protein of unknown function (DUF3311) BF90_4198 PF00474 Sodium:solute symporter family BF90_4199 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_4200 PF03845 Spore germination protein BF90_4201 PF05504 Spore germination B3/ GerAC like, C-terminal BF90_4202 PF02421 Ferrous iron transport protein B BF90_4202 PF07664 Ferrous iron transport protein B C terminus BF90_4202 PF17910 FeoB cytosolic helical domain BF90_4202 PF07670 Nucleoside recognition BF90_4203 PF02421 Ferrous iron transport protein B BF90_4203 PF07664 Ferrous iron transport protein B C terminus BF90_4203 PF17910 FeoB cytosolic helical domain BF90_4203 PF07670 Nucleoside recognition BF90_4204 PF04023 FeoA domain BF90_4204 PF07664 Ferrous iron transport protein B C terminus BF90_4204 PF17910 FeoB cytosolic helical domain BF90_4204 PF02421 Ferrous iron transport protein B BF90_4204 PF07670 Nucleoside recognition BF90_4205 PF12849 PBP superfamily domain BF90_4206 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4207 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4209 PF00873 AcrB/AcrD/AcrF family BF90_422 PF01225 Mur ligase family, catalytic domain BF90_422 PF08245 Mur ligase middle domain BF90_422 PF02875 Mur ligase family, glutamate ligase domain BF90_423 PF02875 Mur ligase family, glutamate ligase domain BF90_423 PF08245 Mur ligase middle domain BF90_423 PF01225 Mur ligase family, catalytic domain BF90_4234 PF00571 CBS domain BF90_4237 PF00246 Zinc carboxypeptidase BF90_4237 PF08239 Bacterial SH3 domain BF90_4238 PF03070 TENA/THI-4/PQQC family BF90_4239 PF00005 ABC transporter BF90_4240 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4241 PF09084 NMT1/THI5 like BF90_4242 PF02581 Thiamine monophosphate synthase BF90_4243 PF01266 FAD dependent oxidoreductase BF90_4244 PF02597 ThiS family BF90_4245 PF05690 Thiazole biosynthesis protein ThiG BF90_4246 PF00899 ThiF family BF90_4247 PF08543 Phosphomethylpyrimidine kinase BF90_4251 PF03814 Potassium-transporting ATPase A subunit BF90_4253 PF02669 K+-transporting ATPase, c chain BF90_4254 PF02702 Osmosensitive K+ channel His kinase sensor domain BF90_4255 PF07690 Major Facilitator Superfamily BF90_4256 PF01047 MarR family BF90_4259 PF00860 Permease family BF90_426 PF07486 Cell Wall Hydrolase BF90_4261 PF17969 L,D-transpeptidase C-terminal domain BF90_4261 PF03734 L,D-transpeptidase catalytic domain BF90_4263 PF00294 pfkB family carbohydrate kinase BF90_4264 PF00251 Glycosyl hydrolases family 32 N-terminal domain BF90_4264 PF08244 Glycosyl hydrolases family 32 C terminal BF90_4265 PF00367 phosphotransferase system, EIIB BF90_4265 PF02378 Phosphotransferase system, EIIC BF90_4266 PF13407 Periplasmic binding protein domain BF90_4266 PF00356 Bacterial regulatory proteins, lacI family BF90_4268 PF00085 Thioredoxin BF90_4269 PF02600 Disulfide bond formation protein DsbB BF90_4270 PF14148 YhdB-like protein BF90_4272 PF03845 Spore germination protein BF90_4274 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_4276 PF00881 Nitroreductase family BF90_4277 PF04293 SpoVR like protein BF90_428 PF00072 Response regulator receiver domain BF90_428 PF00486 Transcriptional regulatory protein, C terminal BF90_4282 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_4282 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF90_4283 PF02583 Metal-sensitive transcriptional repressor BF90_4284 PF00581 Rhodanese-like domain BF90_4284 PF01206 Sulfurtransferase TusA BF90_4285 PF00753 Metallo-beta-lactamase superfamily BF90_4285 PF00581 Rhodanese-like domain BF90_4286 PF01206 Sulfurtransferase TusA BF90_4288 PF00581 Rhodanese-like domain BF90_4290 PF13686 DsrE/DsrF/DrsH-like family BF90_4291 PF01925 Sulfite exporter TauE/SafE BF90_4293 PF03816 Cell envelope-related transcriptional attenuator domain BF90_4294 PF00107 Zinc-binding dehydrogenase BF90_4294 PF08240 Alcohol dehydrogenase GroES-like domain BF90_4295 PF02690 Na+/Pi-cotransporter BF90_4296 PF07690 Major Facilitator Superfamily BF90_4298 PF00874 PRD domain BF90_4298 PF05043 Mga helix-turn-helix domain BF90_4298 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF90_4298 PF08279 HTH domain BF90_4299 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF90_430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF90_4301 PF02378 Phosphotransferase system, EIIC BF90_4304 PF06725 3D domain BF90_4304 PF01476 LysM domain BF90_4305 PF12704 MacB-like periplasmic core domain BF90_4305 PF02687 FtsX-like permease family BF90_4306 PF00005 ABC transporter BF90_4308 PF09529 Integral membrane protein (intg_mem_TP0381) BF90_4311 PF05525 Branched-chain amino acid transport protein BF90_4312 PF05067 Manganese containing catalase BF90_4313 PF12652 CotJB protein BF90_4314 PF11007 Spore coat associated protein JA (CotJA) BF90_4317 PF02735 Ku70/Ku80 beta-barrel domain BF90_4319 PF09335 SNARE associated Golgi protein BF90_4326 PF13520 Amino acid permease BF90_4327 PF00999 Sodium/hydrogen exchanger family BF90_4329 PF01380 SIS domain BF90_4329 PF01418 Helix-turn-helix domain, rpiR family BF90_4330 PF01380 SIS domain BF90_4331 PF00367 phosphotransferase system, EIIB BF90_4331 PF02378 Phosphotransferase system, EIIC BF90_4333 PF07681 DoxX BF90_4336 PF00892 EamA-like transporter family BF90_4337 PF01037 Lrp/AsnC ligand binding domain BF90_4339 PF00893 Small Multidrug Resistance protein BF90_4340 PF00893 Small Multidrug Resistance protein BF90_4341 PF00440 Bacterial regulatory proteins, tetR family BF90_4341 PF17934 Tetracyclin repressor-like, C-terminal domain BF90_4342 PF07690 Major Facilitator Superfamily BF90_4343 PF01638 HxlR-like helix-turn-helix BF90_4345 PF02525 Flavodoxin-like fold BF90_4346 PF12793 Sugar transport-related sRNA regulator N-term BF90_4346 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_4347 PF07690 Major Facilitator Superfamily BF90_4349 PF01965 DJ-1/PfpI family BF90_435 PF00005 ABC transporter BF90_4350 PF18011 C-terminal domain found in long catalases BF90_4350 PF06628 Catalase-related immune-responsive BF90_4350 PF00199 Catalase BF90_4352 PF13520 Amino acid permease BF90_4353 PF01177 Asp/Glu/Hydantoin racemase BF90_4355 PF00171 Aldehyde dehydrogenase family BF90_4356 PF00005 ABC transporter BF90_4356 PF00664 ABC transporter transmembrane region BF90_4357 PF00005 ABC transporter BF90_4357 PF00664 ABC transporter transmembrane region BF90_4358 PF00664 ABC transporter transmembrane region BF90_4358 PF00005 ABC transporter BF90_4359 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF90_436 PF02687 FtsX-like permease family BF90_4360 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4361 PF00005 ABC transporter BF90_4362 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF90_4364 PF14398 YheC/D like ATP-grasp BF90_4366 PF04286 Protein of unknown function (DUF445) BF90_4367 PF06133 Control of competence regulator ComK, YlbF/YmcA BF90_437 PF02687 FtsX-like permease family BF90_4370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF90_4370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF90_4370 PF00205 Thiamine pyrophosphate enzyme, central domain BF90_4371 PF03306 Alpha-acetolactate decarboxylase BF90_4373 PF02245 Methylpurine-DNA glycosylase (MPG) BF90_4376 PF01476 LysM domain BF90_4376 PF01510 N-acetylmuramoyl-L-alanine amidase BF90_4376 PF01471 Putative peptidoglycan binding domain BF90_4378 PF04055 Radical SAM superfamily BF90_4379 PF00501 AMP-binding enzyme BF90_4379 PF13193 AMP-binding enzyme C-terminal domain BF90_4381 PF01740 STAS domain BF90_4381 PF00916 Sulfate permease family BF90_4385 PF01043 SecA preprotein cross-linking domain BF90_4385 PF07516 SecA Wing and Scaffold domain BF90_4385 PF07517 SecA DEAD-like domain BF90_4386 PF14667 Polysaccharide biosynthesis C-terminal domain BF90_4386 PF01943 Polysaccharide biosynthesis protein BF90_4388 PF00395 S-layer homology domain BF90_4388 PF02368 Bacterial Ig-like domain (group 2) BF90_4388 PF13205 Bacterial Ig-like domain BF90_4389 PF00395 S-layer homology domain BF90_4391 PF03062 MBOAT, membrane-bound O-acyltransferase family BF90_4392 PF03062 MBOAT, membrane-bound O-acyltransferase family BF90_4395 PF00378 Enoyl-CoA hydratase/isomerase BF90_4398 PF05343 M42 glutamyl aminopeptidase BF90_4399 PF01520 N-acetylmuramoyl-L-alanine amidase BF90_4399 PF00395 S-layer homology domain BF90_4401 PF11121 Protein of unknown function (DUF2639) BF90_4402 PF05544 Proline racemase BF90_4403 PF02423 Ornithine cyclodeaminase/mu-crystallin family BF90_4404 PF18593 CdiI immunity protein BF90_4408 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_4409 PF00528 Binding-protein-dependent transport system inner membrane component BF90_441 PF00742 Homoserine dehydrogenase BF90_441 PF03447 Homoserine dehydrogenase, NAD binding domain BF90_441 PF01842 ACT domain BF90_4410 PF12911 N-terminal TM domain of oligopeptide transport permease C BF90_4410 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4411 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_4411 PF00005 ABC transporter BF90_4412 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_4412 PF00005 ABC transporter BF90_4413 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_4413 PF00005 ABC transporter BF90_4419 PF00083 Sugar (and other) transporter BF90_442 PF00392 Bacterial regulatory proteins, gntR family BF90_442 PF00155 Aminotransferase class I and II BF90_4420 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF90_4420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4421 PF00072 Response regulator receiver domain BF90_4421 PF08279 HTH domain BF90_4421 PF12431 Transcriptional regulator BF90_4422 PF03401 Tripartite tricarboxylate transporter family receptor BF90_4423 PF02342 TerD domain BF90_4427 PF13411 MerR HTH family regulatory protein BF90_4427 PF06445 GyrI-like small molecule binding domain BF90_443 PF01820 D-ala D-ala ligase N-terminus BF90_443 PF07478 D-ala D-ala ligase C-terminus BF90_4430 PF03796 DnaB-like helicase C terminal domain BF90_4430 PF00772 DnaB-like helicase N terminal domain BF90_4435 PF01925 Sulfite exporter TauE/SafE BF90_4438 PF07690 Major Facilitator Superfamily BF90_444 PF03070 TENA/THI-4/PQQC family BF90_4449 PF00550 Phosphopantetheine attachment site BF90_4449 PF07993 Male sterility protein BF90_4450 PF00440 Bacterial regulatory proteins, tetR family BF90_4450 PF18665 Tetracyclin repressor-like, C-terminal domain BF90_4454 PF01066 CDP-alcohol phosphatidyltransferase BF90_4458 PF02733 Dak1 domain BF90_4460 PF02733 Dak1 domain BF90_4461 PF02525 Flavodoxin-like fold BF90_4462 PF02082 Transcriptional regulator BF90_4467 PF00672 HAMP domain BF90_4467 PF01966 HD domain BF90_4472 PF00395 S-layer homology domain BF90_4477 PF11181 Heat induced stress protein YflT BF90_4478 PF05532 CsbD-like BF90_4481 PF01740 STAS domain BF90_4482 PF13581 Histidine kinase-like ATPase domain BF90_4483 PF04539 Sigma-70 region 3 BF90_4483 PF04545 Sigma-70, region 4 BF90_4483 PF04542 Sigma-70 region 2 BF90_4485 PF13426 PAS domain BF90_4485 PF07228 Stage II sporulation protein E (SpoIIE) BF90_4486 PF01739 CheR methyltransferase, SAM binding domain BF90_4486 PF03705 CheR methyltransferase, all-alpha domain BF90_4487 PF00072 Response regulator receiver domain BF90_4487 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF90_4487 PF01627 Hpt domain BF90_4487 PF00512 His Kinase A (phospho-acceptor) domain BF90_4487 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4492 PF01906 Putative heavy-metal-binding BF90_4494 PF00107 Zinc-binding dehydrogenase BF90_4494 PF08240 Alcohol dehydrogenase GroES-like domain BF90_4495 PF11121 Protein of unknown function (DUF2639) BF90_4498 PF00149 Calcineurin-like phosphoesterase BF90_4499 PF13514 AAA domain BF90_4500 PF01385 Probable transposase BF90_4500 PF07282 Putative transposase DNA-binding domain BF90_4500 PF12323 Helix-turn-helix domain BF90_4502 PF01336 OB-fold nucleic acid binding domain BF90_4502 PF01966 HD domain BF90_4503 PF00440 Bacterial regulatory proteins, tetR family BF90_4504 PF07690 Major Facilitator Superfamily BF90_4505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_4506 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_4507 PF18801 response regulator aspartate phosphatase H, N terminal BF90_4509 PF00561 alpha/beta hydrolase fold BF90_4509 PF08386 TAP-like protein BF90_4514 PF04309 Glycerol-3-phosphate responsive antiterminator BF90_4515 PF00230 Major intrinsic protein BF90_4516 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF90_4516 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF90_4517 PF01266 FAD dependent oxidoreductase BF90_4517 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BF90_4520 PF08281 Sigma-70, region 4 BF90_4520 PF04542 Sigma-70 region 2 BF90_4525 PF07690 Major Facilitator Superfamily BF90_4526 PF07690 Major Facilitator Superfamily BF90_4528 PF13538 UvrD-like helicase C-terminal domain BF90_4532 PF01047 MarR family BF90_4533 PF12732 YtxH-like protein BF90_4534 PF01230 HIT domain BF90_4535 PF00005 ABC transporter BF90_4536 PF05975 Bacterial ABC transporter protein EcsB BF90_4537 PF12787 EcsC protein family BF90_4539 PF00440 Bacterial regulatory proteins, tetR family BF90_4539 PF17934 Tetracyclin repressor-like, C-terminal domain BF90_4541 PF03703 Bacterial PH domain BF90_4543 PF03703 Bacterial PH domain BF90_4552 PF03703 Bacterial PH domain BF90_4553 PF03703 Bacterial PH domain BF90_4554 PF03992 Antibiotic biosynthesis monooxygenase BF90_4555 PF00905 Penicillin binding protein transpeptidase domain BF90_4555 PF00912 Transglycosylase BF90_4556 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF90_4563 PF03965 Penicillinase repressor BF90_4565 PF00440 Bacterial regulatory proteins, tetR family BF90_4565 PF17932 Tetracyclin repressor-like, C-terminal domain BF90_4571 PF00356 Bacterial regulatory proteins, lacI family BF90_4572 PF14149 YhfH-like protein BF90_4573 PF12706 Beta-lactamase superfamily domain BF90_4574 PF10437 Bacterial lipoate protein ligase C-terminus BF90_4574 PF03099 Biotin/lipoate A/B protein ligase family BF90_4576 PF13193 AMP-binding enzyme C-terminal domain BF90_4576 PF00501 AMP-binding enzyme BF90_4578 PF01520 N-acetylmuramoyl-L-alanine amidase BF90_4578 PF00395 S-layer homology domain BF90_4579 PF05593 RHS Repeat BF90_4582 PF05593 RHS Repeat BF90_4587 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF90_4589 PF00149 Calcineurin-like phosphoesterase BF90_4590 PF01966 HD domain BF90_4592 PF04542 Sigma-70 region 2 BF90_4592 PF08281 Sigma-70, region 4 BF90_4593 PF12833 Helix-turn-helix domain BF90_4593 PF06445 GyrI-like small molecule binding domain BF90_4596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4596 PF00512 His Kinase A (phospho-acceptor) domain BF90_4597 PF00072 Response regulator receiver domain BF90_4597 PF00486 Transcriptional regulatory protein, C terminal BF90_460 PF00067 Cytochrome P450 BF90_4602 PF01435 Peptidase family M48 BF90_4602 PF16491 CAAX prenyl protease N-terminal, five membrane helices BF90_4603 PF00672 HAMP domain BF90_4603 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_4603 PF02743 Cache domain BF90_4604 PF00892 EamA-like transporter family BF90_4605 PF03424 Carbohydrate binding domain (family 17/28) BF90_4605 PF00395 S-layer homology domain BF90_4605 PF00150 Cellulase (glycosyl hydrolase family 5) BF90_4607 PF00395 S-layer homology domain BF90_4608 PF01274 Malate synthase BF90_4609 PF00463 Isocitrate lyase family BF90_4611 PF00313 'Cold-shock' DNA-binding domain BF90_4614 PF06338 ComK protein BF90_4615 PF09335 SNARE associated Golgi protein BF90_4616 PF10502 Signal peptidase, peptidase S26 BF90_4617 PF12705 PD-(D/E)XK nuclease superfamily BF90_4617 PF13361 UvrD-like helicase C-terminal domain BF90_4618 PF13361 UvrD-like helicase C-terminal domain BF90_4618 PF12705 PD-(D/E)XK nuclease superfamily BF90_4618 PF00580 UvrD/REP helicase N-terminal domain BF90_462 PF00132 Bacterial transferase hexapeptide (six repeats) BF90_4620 PF10676 Spore germination protein gerPA/gerPF BF90_4621 PF10970 Spore germination protein GerPE BF90_4623 PF10737 Spore germination protein GerPC BF90_4624 PF10803 Spore germination GerPB BF90_4625 PF10676 Spore germination protein gerPA/gerPF BF90_4627 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF90_4629 PF00202 Aminotransferase class-III BF90_463 PF07561 Domain of Unknown Function (DUF1540) BF90_4630 PF07457 Protein of unknown function (DUF1516) BF90_4632 PF00733 Asparagine synthase BF90_4632 PF13537 Glutamine amidotransferase domain BF90_4634 PF06628 Catalase-related immune-responsive BF90_4634 PF00199 Catalase BF90_4635 PF00909 Ammonium Transporter Family BF90_4636 PF00128 Alpha amylase, catalytic domain BF90_4639 PF04461 Protein of unknown function (DUF520) BF90_4640 PF17783 CvfB-like winged helix domain BF90_4640 PF13509 S1 domain BF90_4642 PF00639 PPIC-type PPIASE domain BF90_4644 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_4644 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_4645 PF12758 Protein of unknown function (DUF3813) BF90_4648 PF14168 YjzC-like protein BF90_4649 PF10431 C-terminal, D2-small domain, of ClpB protein BF90_4649 PF17871 AAA lid domain BF90_4649 PF07724 AAA domain (Cdc48 subfamily) BF90_4649 PF00004 ATPase family associated with various cellular activities (AAA) BF90_4649 PF02861 Clp amino terminal domain, pathogenicity island component BF90_465 PF00067 Cytochrome P450 BF90_4653 PF10815 ComZ BF90_4654 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF90_4654 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF90_4655 PF00109 Beta-ketoacyl synthase, N-terminal domain BF90_4655 PF02801 Beta-ketoacyl synthase, C-terminal domain BF90_4656 PF10026 Predicted Zn-dependent protease (DUF2268) BF90_4657 PF12227 Protein of unknown function (DUF3603) BF90_4658 PF00579 tRNA synthetases class I (W and Y) BF90_4660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_4661 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4662 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4662 PF12911 N-terminal TM domain of oligopeptide transport permease C BF90_4663 PF00005 ABC transporter BF90_4663 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_4664 PF00005 ABC transporter BF90_4664 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF90_4665 PF01554 MatE BF90_4666 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_4668 PF03960 ArsC family BF90_4669 PF03741 Integral membrane protein TerC family BF90_4670 PF05389 Negative regulator of genetic competence (MecA) BF90_4671 PF13396 Phospholipase_D-nuclease N-terminal BF90_4671 PF13091 PLD-like domain BF90_4673 PF08439 Oligopeptidase F BF90_4673 PF01432 Peptidase family M3 BF90_4676 PF01152 Bacterial-like globin BF90_4677 PF01928 CYTH domain BF90_4679 PF04607 Region found in RelA / SpoT proteins BF90_4680 PF01513 ATP-NAD kinase BF90_4681 PF00849 RNA pseudouridylate synthase BF90_4683 PF00149 Calcineurin-like phosphoesterase BF90_4684 PF01098 Cell cycle protein BF90_4685 PF01098 Cell cycle protein BF90_4686 PF00535 Glycosyl transferase family 2 BF90_4687 PF08241 Methyltransferase domain BF90_4688 PF05711 Macrocin-O-methyltransferase (TylF) BF90_469 PF13426 PAS domain BF90_469 PF00512 His Kinase A (phospho-acceptor) domain BF90_469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_469 PF00989 PAS fold BF90_469 PF13188 PAS domain BF90_4690 PF00535 Glycosyl transferase family 2 BF90_4690 PF13181 Tetratricopeptide repeat BF90_4695 PF00483 Nucleotidyl transferase BF90_4696 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF90_4697 PF16363 GDP-mannose 4,6 dehydratase BF90_4698 PF16363 GDP-mannose 4,6 dehydratase BF90_4699 PF04321 RmlD substrate binding domain BF90_4703 PF07098 Protein of unknown function (DUF1360) BF90_4706 PF13361 UvrD-like helicase C-terminal domain BF90_4706 PF00580 UvrD/REP helicase N-terminal domain BF90_4707 PF13673 Acetyltransferase (GNAT) domain BF90_4709 PF00756 Putative esterase BF90_471 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF90_4712 PF02368 Bacterial Ig-like domain (group 2) BF90_4713 PF00474 Sodium:solute symporter family BF90_4715 PF02885 Glycosyl transferase family, helical bundle domain BF90_4715 PF00591 Glycosyl transferase family, a/b domain BF90_4715 PF00117 Glutamine amidotransferase class-I BF90_4716 PF00591 Glycosyl transferase family, a/b domain BF90_4716 PF02885 Glycosyl transferase family, helical bundle domain BF90_4717 PF00218 Indole-3-glycerol phosphate synthase BF90_4718 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BF90_4719 PF00291 Pyridoxal-phosphate dependent enzyme BF90_472 PF01177 Asp/Glu/Hydantoin racemase BF90_4720 PF00290 Tryptophan synthase alpha chain BF90_4722 PF02652 L-lactate permease BF90_4723 PF10042 Uncharacterized conserved protein (DUF2278) BF90_4727 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF90_4727 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_473 PF07155 ECF-type riboflavin transporter, S component BF90_4733 PF02817 e3 binding domain BF90_4733 PF00364 Biotin-requiring enzyme BF90_4733 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF90_4734 PF02779 Transketolase, pyrimidine binding domain BF90_4734 PF00676 Dehydrogenase E1 component BF90_4734 PF16870 2-oxoglutarate dehydrogenase C-terminal BF90_4735 PF01381 Helix-turn-helix BF90_474 PF00005 ABC transporter BF90_474 PF12558 ATP-binding cassette cobalt transporter BF90_4746 PF13649 Methyltransferase domain BF90_4748 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_4748 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_4750 PF12389 Camelysin metallo-endopeptidase BF90_4752 PF12389 Camelysin metallo-endopeptidase BF90_4753 PF08671 Anti-repressor SinI BF90_4753 PF01381 Helix-turn-helix BF90_4754 PF05547 Immune inhibitor A peptidase M6 BF90_4755 PF00171 Aldehyde dehydrogenase family BF90_4756 PF00005 ABC transporter BF90_4756 PF08402 TOBE domain BF90_4757 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4758 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4759 PF13416 Bacterial extracellular solute-binding protein BF90_4761 PF03176 MMPL family BF90_4763 PF01479 S4 domain BF90_4763 PF00849 RNA pseudouridylate synthase BF90_4765 PF00188 Cysteine-rich secretory protein family BF90_4766 PF02754 Cysteine-rich domain BF90_4766 PF13183 4Fe-4S dicluster domain BF90_4767 PF02913 FAD linked oxidases, C-terminal domain BF90_4767 PF01565 FAD binding domain BF90_4768 PF13556 PucR C-terminal helix-turn-helix domain BF90_4768 PF05651 Putative sugar diacid recognition BF90_4768 PF17853 GGDEF-like domain BF90_477 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_477 PF00512 His Kinase A (phospho-acceptor) domain BF90_4770 PF00486 Transcriptional regulatory protein, C terminal BF90_4770 PF00072 Response regulator receiver domain BF90_4771 PF00989 PAS fold BF90_4771 PF18698 Histidine kinase sensor domain BF90_4771 PF00512 His Kinase A (phospho-acceptor) domain BF90_4771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4771 PF00672 HAMP domain BF90_4772 PF07729 FCD domain BF90_4772 PF00392 Bacterial regulatory proteins, gntR family BF90_4773 PF02754 Cysteine-rich domain BF90_4774 PF02589 LUD domain BF90_4774 PF11870 Domain of unknown function (DUF3390) BF90_4774 PF13183 4Fe-4S dicluster domain BF90_4775 PF02589 LUD domain BF90_4776 PF06750 Bacterial Peptidase A24 N-terminal domain BF90_4776 PF01478 Type IV leader peptidase family BF90_4778 PF01226 Formate/nitrite transporter BF90_4779 PF03741 Integral membrane protein TerC family BF90_4780 PF02386 Cation transport protein BF90_4781 PF02386 Cation transport protein BF90_4782 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF90_4783 PF01575 MaoC like domain BF90_4788 PF00561 alpha/beta hydrolase fold BF90_4790 PF02386 Cation transport protein BF90_4795 PF08402 TOBE domain BF90_4795 PF00005 ABC transporter BF90_4796 PF00005 ABC transporter BF90_4798 PF00528 Binding-protein-dependent transport system inner membrane component BF90_4799 PF13419 Haloacid dehalogenase-like hydrolase BF90_480 PF00107 Zinc-binding dehydrogenase BF90_480 PF08240 Alcohol dehydrogenase GroES-like domain BF90_4800 PF00266 Aminotransferase class-V BF90_4803 PF08220 DeoR-like helix-turn-helix domain BF90_4803 PF00455 DeoR C terminal sensor domain BF90_4807 PF01520 N-acetylmuramoyl-L-alanine amidase BF90_4807 PF00395 S-layer homology domain BF90_4808 PF00596 Class II Aldolase and Adducin N-terminal domain BF90_4809 PF00596 Class II Aldolase and Adducin N-terminal domain BF90_4811 PF04748 Divergent polysaccharide deacetylase BF90_4812 PF09388 Spo0E like sporulation regulatory protein BF90_4813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4813 PF00512 His Kinase A (phospho-acceptor) domain BF90_4813 PF02743 Cache domain BF90_4814 PF01047 MarR family BF90_4816 PF12867 DinB superfamily BF90_4818 PF13426 PAS domain BF90_4818 PF00989 PAS fold BF90_4818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4818 PF13188 PAS domain BF90_4818 PF00512 His Kinase A (phospho-acceptor) domain BF90_4819 PF06508 Queuosine biosynthesis protein QueC BF90_4820 PF01242 6-pyruvoyl tetrahydropterin synthase BF90_4821 PF04055 Radical SAM superfamily BF90_4822 PF14489 QueF-like protein BF90_4823 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BF90_4829 PF07972 NrdI Flavodoxin like BF90_483 PF11954 Domain of unknown function (DUF3471) BF90_483 PF00144 Beta-lactamase BF90_4830 PF00317 Ribonucleotide reductase, all-alpha domain BF90_4830 PF08343 Ribonucleotide reductase N-terminal BF90_4830 PF02867 Ribonucleotide reductase, barrel domain BF90_4832 PF02867 Ribonucleotide reductase, barrel domain BF90_4832 PF08343 Ribonucleotide reductase N-terminal BF90_4832 PF00317 Ribonucleotide reductase, all-alpha domain BF90_4833 PF00268 Ribonucleotide reductase, small chain BF90_4834 PF00392 Bacterial regulatory proteins, gntR family BF90_4835 PF00005 ABC transporter BF90_4837 PF00005 ABC transporter BF90_4841 PF01037 Lrp/AsnC ligand binding domain BF90_4843 PF00857 Isochorismatase family BF90_4845 PF02016 LD-carboxypeptidase N-terminal domain BF90_4845 PF17676 LD-carboxypeptidase C-terminal domain BF90_4846 PF03060 Nitronate monooxygenase BF90_4847 PF04914 DltD protein BF90_4848 PF00550 Phosphopantetheine attachment site BF90_4849 PF03062 MBOAT, membrane-bound O-acyltransferase family BF90_4850 PF00501 AMP-binding enzyme BF90_4850 PF13193 AMP-binding enzyme C-terminal domain BF90_4852 PF07687 Peptidase dimerisation domain BF90_4852 PF01546 Peptidase family M20/M25/M40 BF90_4854 PF00258 Flavodoxin BF90_4857 PF01636 Phosphotransferase enzyme family BF90_4861 PF01554 MatE BF90_4862 PF02673 Bacitracin resistance protein BacA BF90_4865 PF01047 MarR family BF90_4867 PF00375 Sodium:dicarboxylate symporter family BF90_4868 PF02386 Cation transport protein BF90_4870 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF90_4872 PF03698 Uncharacterised protein family (UPF0180) BF90_4875 PF01063 Amino-transferase class IV BF90_4876 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF90_4876 PF00205 Thiamine pyrophosphate enzyme, central domain BF90_4876 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF90_4877 PF01842 ACT domain BF90_4877 PF10369 Small subunit of acetolactate synthase BF90_4878 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF90_4878 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF90_4879 PF00682 HMGL-like BF90_4879 PF08502 LeuA allosteric (dimerisation) domain BF90_4880 PF00180 Isocitrate/isopropylmalate dehydrogenase BF90_4881 PF00330 Aconitase family (aconitate hydratase) BF90_4882 PF00694 Aconitase C-terminal domain BF90_4883 PF13393 Histidyl-tRNA synthetase BF90_4884 PF01634 ATP phosphoribosyltransferase BF90_4885 PF00815 Histidinol dehydrogenase BF90_4886 PF00475 Imidazoleglycerol-phosphate dehydratase BF90_4887 PF00117 Glutamine amidotransferase class-I BF90_4888 PF00977 Histidine biosynthesis protein BF90_4889 PF00977 Histidine biosynthesis protein BF90_4890 PF01502 Phosphoribosyl-AMP cyclohydrolase BF90_4891 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF90_4892 PF02811 PHP domain BF90_4894 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF90_4894 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF90_4895 PF01066 CDP-alcohol phosphatidyltransferase BF90_4896 PF00884 Sulfatase BF90_4898 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF90_4898 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF90_490 PF01965 DJ-1/PfpI family BF90_4900 PF01507 Phosphoadenosine phosphosulfate reductase family BF90_4901 PF14306 PUA-like domain BF90_4901 PF01747 ATP-sulfurylase BF90_4903 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF90_4903 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF90_4905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF90_4906 PF01903 CbiX BF90_4908 PF00209 Sodium:neurotransmitter symporter family BF90_4910 PF00375 Sodium:dicarboxylate symporter family BF90_4912 PF03553 Na+/H+ antiporter family BF90_4915 PF09922 Cell wall-active antibiotics response 4TMS YvqF BF90_4916 PF07730 Histidine kinase BF90_4916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4916 PF00672 HAMP domain BF90_4917 PF00072 Response regulator receiver domain BF90_4917 PF00196 Bacterial regulatory proteins, luxR family BF90_4919 PF05525 Branched-chain amino acid transport protein BF90_4921 PF08241 Methyltransferase domain BF90_4926 PF00175 Oxidoreductase NAD-binding domain BF90_4926 PF00970 Oxidoreductase FAD-binding domain BF90_4926 PF00042 Globin BF90_4929 PF01925 Sulfite exporter TauE/SafE BF90_493 PF00144 Beta-lactamase BF90_4930 PF01384 Phosphate transporter family BF90_4931 PF01865 Protein of unknown function DUF47 BF90_4932 PF00912 Transglycosylase BF90_4932 PF00905 Penicillin binding protein transpeptidase domain BF90_4935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4935 PF00989 PAS fold BF90_4935 PF00512 His Kinase A (phospho-acceptor) domain BF90_4936 PF01904 Protein of unknown function DUF72 BF90_4938 PF00589 Phage integrase family BF90_4939 PF00989 PAS fold BF90_4939 PF16736 Single Cache-like BF90_4939 PF00512 His Kinase A (phospho-acceptor) domain BF90_4939 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4940 PF01048 Phosphorylase superfamily BF90_4943 PF03706 Lysylphosphatidylglycerol synthase TM region BF90_4943 PF09924 Uncharacterised conserved protein (DUF2156) BF90_4946 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF90_4946 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF90_4947 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_4947 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_4948 PF07670 Nucleoside recognition BF90_4949 PF07670 Nucleoside recognition BF90_495 PF07690 Major Facilitator Superfamily BF90_4950 PF01479 S4 domain BF90_4950 PF00849 RNA pseudouridylate synthase BF90_4951 PF00578 AhpC/TSA family BF90_4952 PF05140 ResB-like family BF90_4953 PF01578 Cytochrome C assembly protein BF90_4954 PF00072 Response regulator receiver domain BF90_4954 PF00486 Transcriptional regulatory protein, C terminal BF90_4955 PF00672 HAMP domain BF90_4955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_4955 PF18698 Histidine kinase sensor domain BF90_4955 PF00512 His Kinase A (phospho-acceptor) domain BF90_4955 PF00989 PAS fold BF90_4956 PF01923 Cobalamin adenosyltransferase BF90_4959 PF12822 ECF transporter, substrate-specific component BF90_4961 PF14493 Helix-turn-helix domain BF90_4962 PF00271 Helicase conserved C-terminal domain BF90_4962 PF00270 DEAD/DEAH box helicase BF90_4963 PF02517 CPBP intramembrane metalloprotease BF90_4965 PF00149 Calcineurin-like phosphoesterase BF90_4966 PF13411 MerR HTH family regulatory protein BF90_4966 PF02607 B12 binding domain BF90_4966 PF02310 B12 binding domain BF90_4967 PF05389 Negative regulator of genetic competence (MecA) BF90_4968 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF90_4968 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF90_4973 PF17763 Glutaminase/Asparaginase C-terminal domain BF90_4973 PF00710 Asparaginase, N-terminal BF90_4975 PF02224 Cytidylate kinase BF90_4976 PF00575 S1 RNA binding domain BF90_4977 PF01070 FMN-dependent dehydrogenase BF90_4978 PF14140 YpzI-like protein BF90_4980 PF14045 YIEGIA protein BF90_4982 PF01926 50S ribosome-binding GTPase BF90_4982 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF90_4983 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF90_4983 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF90_4985 PF10966 Protein of unknown function (DUF2768) BF90_4987 PF09547 Stage IV sporulation protein A (spore_IV_A) BF90_4988 PF00216 Bacterial DNA-binding protein BF90_4989 PF01227 GTP cyclohydrolase I BF90_499 PF03009 Glycerophosphoryl diester phosphodiesterase family BF90_4990 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BF90_4991 PF01209 ubiE/COQ5 methyltransferase family BF90_4992 PF00348 Polyprenyl synthetase BF90_4993 PF00334 Nucleoside diphosphate kinase BF90_4994 PF01264 Chorismate synthase BF90_4995 PF01761 3-dehydroquinate synthase BF90_4996 PF00155 Aminotransferase class I and II BF90_4998 PF08864 UPF0302 domain BF90_4998 PF08858 IDEAL domain BF90_4999 PF10673 Protein of unknown function (DUF2487) BF90_5000 PF00355 Rieske [2Fe-2S] domain BF90_5001 PF00033 Cytochrome b/b6/petB BF90_5002 PF00032 Cytochrome b(C-terminal)/b6/petD BF90_5002 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF90_5003 PF07187 Protein of unknown function (DUF1405) BF90_5005 PF09577 Sporulation protein YpjB (SpoYpjB) BF90_5006 PF04298 Putative neutral zinc metallopeptidase BF90_5008 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_5008 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_5009 PF03819 MazG nucleotide pyrophosphohydrolase domain BF90_5010 PF05173 Dihydrodipicolinate reductase, C-terminus BF90_5010 PF01113 Dihydrodipicolinate reductase, N-terminus BF90_5011 PF02142 MGS-like domain BF90_5012 PF02585 GlcNAc-PI de-N-acetylase BF90_5013 PF13439 Glycosyltransferase Family 4 BF90_5013 PF00534 Glycosyl transferases group 1 BF90_5014 PF12627 Probable RNA and SrmB- binding site of polymerase A BF90_5014 PF01743 Poly A polymerase head domain BF90_5014 PF13735 tRNA nucleotidyltransferase domain 2 putative BF90_5015 PF08279 HTH domain BF90_5015 PF03099 Biotin/lipoate A/B protein ligase family BF90_5015 PF02237 Biotin protein ligase C terminal domain BF90_5017 PF02548 Ketopantoate hydroxymethyltransferase BF90_5018 PF02569 Pantoate-beta-alanine ligase BF90_5019 PF02261 Aspartate decarboxylase BF90_502 PF00392 Bacterial regulatory proteins, gntR family BF90_502 PF00155 Aminotransferase class I and II BF90_5020 PF04851 Type III restriction enzyme, res subunit BF90_5020 PF13307 Helicase C-terminal domain BF90_5020 PF00929 Exonuclease BF90_5021 PF13307 Helicase C-terminal domain BF90_5021 PF04851 Type III restriction enzyme, res subunit BF90_5021 PF00929 Exonuclease BF90_5022 PF14084 Protein of unknown function (DUF4264) BF90_5024 PF00155 Aminotransferase class I and II BF90_5025 PF07261 Replication initiation and membrane attachment BF90_5026 PF00730 HhH-GPD superfamily base excision DNA repair protein BF90_5026 PF00633 Helix-hairpin-helix motif BF90_5026 PF10576 Iron-sulfur binding domain of endonuclease III BF90_5028 PF00912 Transglycosylase BF90_5028 PF00905 Penicillin binding protein transpeptidase domain BF90_5029 PF03838 Recombination protein U BF90_503 PF00155 Aminotransferase class I and II BF90_503 PF00392 Bacterial regulatory proteins, gntR family BF90_5030 PF10720 Protein of unknown function (DUF2515) BF90_5037 PF06908 YspA SLOG family BF90_5038 PF05103 DivIVA protein BF90_5039 PF02926 THUMP domain BF90_5039 PF01170 Putative RNA methylase family UPF0020 BF90_504 PF00892 EamA-like transporter family BF90_5041 PF13307 Helicase C-terminal domain BF90_5042 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BF90_5044 PF01636 Phosphotransferase enzyme family BF90_5045 PF00557 Metallopeptidase family M24 BF90_5046 PF00156 Phosphoribosyl transferase domain BF90_5047 PF00860 Permease family BF90_5048 PF04235 Protein of unknown function (DUF418) BF90_505 PF00892 EamA-like transporter family BF90_5050 PF00350 Dynamin family BF90_5052 PF00583 Acetyltransferase (GNAT) family BF90_5053 PF10752 Protein of unknown function (DUF2533) BF90_5054 PF00581 Rhodanese-like domain BF90_5057 PF03738 Glutathionylspermidine synthase preATP-grasp BF90_5059 PF00689 Cation transporting ATPase, C-terminus BF90_5059 PF00690 Cation transporter/ATPase, N-terminus BF90_506 PF01270 Glycosyl hydrolases family 8 BF90_5060 PF01367 5'-3' exonuclease, C-terminal SAM fold BF90_5060 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF90_5065 PF02397 Bacterial sugar transferase BF90_5068 PF00535 Glycosyl transferase family 2 BF90_5071 PF00534 Glycosyl transferases group 1 BF90_5071 PF13439 Glycosyltransferase Family 4 BF90_5074 PF18014 Acetyltransferase (GNAT) domain BF90_5074 PF13673 Acetyltransferase (GNAT) domain BF90_5078 PF13456 Reverse transcriptase-like BF90_5079 PF01263 Aldose 1-epimerase BF90_508 PF13344 Haloacid dehalogenase-like hydrolase BF90_508 PF00293 NUDIX domain BF90_5084 PF00313 'Cold-shock' DNA-binding domain BF90_5086 PF01810 LysE type translocator BF90_5089 PF04341 Protein of unknown function, DUF485 BF90_5090 PF00474 Sodium:solute symporter family BF90_5091 PF00202 Aminotransferase class-III BF90_5093 PF00999 Sodium/hydrogen exchanger family BF90_5094 PF00753 Metallo-beta-lactamase superfamily BF90_5094 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF90_5094 PF17770 Ribonuclease J C-terminal domain BF90_5095 PF06445 GyrI-like small molecule binding domain BF90_5095 PF13411 MerR HTH family regulatory protein BF90_5097 PF04239 Protein of unknown function (DUF421) BF90_5098 PF02698 DUF218 domain BF90_5100 PF00881 Nitroreductase family BF90_5109 PF17209 Hfq protein BF90_5111 PF01618 MotA/TolQ/ExbB proton channel family BF90_5112 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF90_5112 PF00691 OmpA family BF90_5113 PF00072 Response regulator receiver domain BF90_5114 PF07194 P2 response regulator binding domain BF90_5114 PF01584 CheW-like domain BF90_5114 PF02895 Signal transducing histidine kinase, homodimeric domain BF90_5114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_5114 PF01627 Hpt domain BF90_5115 PF07194 P2 response regulator binding domain BF90_5115 PF01627 Hpt domain BF90_5115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_5115 PF01584 CheW-like domain BF90_5115 PF02895 Signal transducing histidine kinase, homodimeric domain BF90_5116 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF90_5116 PF04509 CheC-like family BF90_5119 PF03705 CheR methyltransferase, all-alpha domain BF90_5119 PF01739 CheR methyltransferase, SAM binding domain BF90_512 PF07690 Major Facilitator Superfamily BF90_5124 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF90_5124 PF00460 Flagella basal body rod protein BF90_5125 PF00669 Bacterial flagellin N-terminal helical region BF90_5125 PF00700 Bacterial flagellin C-terminal helical region BF90_5130 PF00460 Flagella basal body rod protein BF90_5131 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF90_5131 PF00460 Flagella basal body rod protein BF90_5132 PF02049 Flagellar hook-basal body complex protein FliE BF90_5133 PF08345 Flagellar M-ring protein C-terminal BF90_5133 PF01514 Secretory protein of YscJ/FliF family BF90_5135 PF14842 FliG N-terminal domain BF90_5135 PF14841 FliG middle domain BF90_5135 PF01706 FliG C-terminal domain BF90_5137 PF18269 T3SS EscN ATPase C-terminal domain BF90_5137 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF90_5137 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF90_514 PF09297 NADH pyrophosphatase zinc ribbon domain BF90_514 PF00293 NUDIX domain BF90_5142 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF90_5142 PF00460 Flagella basal body rod protein BF90_5142 PF07559 Flagellar basal body protein FlaE BF90_5146 PF01584 CheW-like domain BF90_5146 PF00072 Response regulator receiver domain BF90_5147 PF12181 DNA binding domain of the motility gene repressor (MogR) BF90_5148 PF00535 Glycosyl transferase family 2 BF90_515 PF00712 DNA polymerase III beta subunit, N-terminal domain BF90_515 PF02767 DNA polymerase III beta subunit, central domain BF90_515 PF02768 DNA polymerase III beta subunit, C-terminal domain BF90_5154 PF13181 Tetratricopeptide repeat BF90_5154 PF00535 Glycosyl transferase family 2 BF90_5159 PF00700 Bacterial flagellin C-terminal helical region BF90_5159 PF00669 Bacterial flagellin N-terminal helical region BF90_516 PF00293 NUDIX domain BF90_5160 PF01464 Transglycosylase SLT domain BF90_5161 PF02154 Flagellar motor switch protein FliM BF90_5161 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF90_5163 PF04509 CheC-like family BF90_5163 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF90_5165 PF00813 FliP family BF90_5166 PF01313 Bacterial export proteins, family 3 BF90_5169 PF01312 FlhB HrpN YscU SpaS Family BF90_5170 PF00771 FHIPEP family BF90_5171 PF00448 SRP54-type protein, GTPase domain BF90_5172 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF90_5172 PF00460 Flagella basal body rod protein BF90_5173 PF02272 DHHA1 domain BF90_5173 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF90_5173 PF01411 tRNA synthetases class II (A) BF90_5178 PF17932 Tetracyclin repressor-like, C-terminal domain BF90_5178 PF00440 Bacterial regulatory proteins, tetR family BF90_5179 PF17329 Family of unknown function (DUF5367) BF90_5182 PF03992 Antibiotic biosynthesis monooxygenase BF90_5183 PF08141 Small acid-soluble spore protein H family BF90_5188 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_5188 PF03466 LysR substrate binding domain BF90_5189 PF00005 ABC transporter BF90_5189 PF08402 TOBE domain BF90_519 PF12706 Beta-lactamase superfamily domain BF90_5191 PF00528 Binding-protein-dependent transport system inner membrane component BF90_5192 PF12706 Beta-lactamase superfamily domain BF90_5192 PF00753 Metallo-beta-lactamase superfamily BF90_5194 PF10787 Uncharacterised protein from bacillus cereus group BF90_5197 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_5197 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_5199 PF00300 Histidine phosphatase superfamily (branch 1) BF90_5206 PF13537 Glutamine amidotransferase domain BF90_5206 PF00733 Asparagine synthase BF90_5210 PF01545 Cation efflux family BF90_5210 PF16916 Dimerisation domain of Zinc Transporter BF90_5212 PF07729 FCD domain BF90_5212 PF00392 Bacterial regulatory proteins, gntR family BF90_5213 PF00892 EamA-like transporter family BF90_5214 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF90_5214 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF90_5215 PF03773 Predicted permease BF90_5217 PF00535 Glycosyl transferase family 2 BF90_5218 PF03553 Na+/H+ antiporter family BF90_5219 PF10415 Fumarase C C-terminus BF90_5219 PF00206 Lyase BF90_5223 PF01554 MatE BF90_5224 PF01554 MatE BF90_5225 PF03575 Peptidase family S51 BF90_5229 PF02683 Cytochrome C biogenesis protein transmembrane region BF90_523 PF09234 Domain of unknown function (DUF1963) BF90_5230 PF00578 AhpC/TSA family BF90_5235 PF00291 Pyridoxal-phosphate dependent enzyme BF90_5236 PF04286 Protein of unknown function (DUF445) BF90_5241 PF00196 Bacterial regulatory proteins, luxR family BF90_5241 PF00072 Response regulator receiver domain BF90_5242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_5242 PF13492 GAF domain BF90_5242 PF13185 GAF domain BF90_5242 PF07730 Histidine kinase BF90_5243 PF00005 ABC transporter BF90_5246 PF13091 PLD-like domain BF90_5247 PF00696 Amino acid kinase family BF90_5248 PF00375 Sodium:dicarboxylate symporter family BF90_5249 PF10415 Fumarase C C-terminus BF90_5249 PF00206 Lyase BF90_5250 PF03949 Malic enzyme, NAD binding domain BF90_5250 PF00390 Malic enzyme, N-terminal domain BF90_5251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_5252 PF08664 YcbB domain BF90_5252 PF00072 Response regulator receiver domain BF90_5254 PF00271 Helicase conserved C-terminal domain BF90_5254 PF00176 SNF2 family N-terminal domain BF90_5254 PF04434 SWIM zinc finger BF90_5256 PF03590 Aspartate-ammonia ligase BF90_5260 PF13840 ACT domain BF90_5260 PF00696 Amino acid kinase family BF90_5263 PF13761 Domain of unknown function (DUF4166) BF90_5264 PF14158 YndJ-like protein BF90_5266 PF00293 NUDIX domain BF90_5267 PF02368 Bacterial Ig-like domain (group 2) BF90_5267 PF13205 Bacterial Ig-like domain BF90_5267 PF00395 S-layer homology domain BF90_5269 PF07690 Major Facilitator Superfamily BF90_5272 PF02554 Carbon starvation protein CstA BF90_5273 PF03976 Polyphosphate kinase 2 (PPK2) BF90_5274 PF07690 Major Facilitator Superfamily BF90_5275 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF90_5275 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF90_5277 PF16360 GTP-binding GTPase Middle Region BF90_5277 PF01926 50S ribosome-binding GTPase BF90_5277 PF13167 GTP-binding GTPase N-terminal BF90_5279 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_5280 PF07690 Major Facilitator Superfamily BF90_5281 PF00291 Pyridoxal-phosphate dependent enzyme BF90_5284 PF01943 Polysaccharide biosynthesis protein BF90_5284 PF14667 Polysaccharide biosynthesis C-terminal domain BF90_5285 PF00209 Sodium:neurotransmitter symporter family BF90_5286 PF03422 Carbohydrate binding module (family 6) BF90_5286 PF01522 Polysaccharide deacetylase BF90_5286 PF00457 Glycosyl hydrolases family 11 BF90_5288 PF04239 Protein of unknown function (DUF421) BF90_529 PF01734 Patatin-like phospholipase BF90_5291 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF90_5291 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF90_5295 PF01625 Peptide methionine sulfoxide reductase BF90_5297 PF01063 Amino-transferase class IV BF90_5298 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF90_5298 PF00205 Thiamine pyrophosphate enzyme, central domain BF90_5298 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF90_5299 PF10369 Small subunit of acetolactate synthase BF90_530 PF08000 Bacterial PH domain BF90_5300 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF90_5300 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF90_5301 PF00920 Dehydratase family BF90_5302 PF00291 Pyridoxal-phosphate dependent enzyme BF90_5302 PF00585 C-terminal regulatory domain of Threonine dehydratase BF90_5304 PF09587 Bacterial capsule synthesis protein PGA_cap BF90_5305 PF09587 Bacterial capsule synthesis protein PGA_cap BF90_5308 PF07690 Major Facilitator Superfamily BF90_5309 PF07690 Major Facilitator Superfamily BF90_5310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BF90_5312 PF04397 LytTr DNA-binding domain BF90_5312 PF00072 Response regulator receiver domain BF90_5313 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BF90_5313 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BF90_5316 PF01979 Amidohydrolase family BF90_5317 PF12146 Serine aminopeptidase, S33 BF90_5317 PF13026 Protein of unknown function (DUF3887) BF90_5319 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_532 PF12867 DinB superfamily BF90_5323 PF13186 Iron-sulfur cluster-binding domain BF90_5323 PF04055 Radical SAM superfamily BF90_5324 PF13302 Acetyltransferase (GNAT) domain BF90_5325 PF00072 Response regulator receiver domain BF90_5325 PF00486 Transcriptional regulatory protein, C terminal BF90_5326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_5326 PF00512 His Kinase A (phospho-acceptor) domain BF90_5328 PF01566 Natural resistance-associated macrophage protein BF90_5331 PF02558 Ketopantoate reductase PanE/ApbA BF90_5331 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF90_5333 PF13520 Amino acid permease BF90_5334 PF13520 Amino acid permease BF90_5336 PF05791 Bacillus haemolytic enterotoxin (HBL) BF90_5337 PF05791 Bacillus haemolytic enterotoxin (HBL) BF90_5339 PF04198 Putative sugar-binding domain BF90_5340 PF01791 DeoC/LacD family aldolase BF90_5341 PF01773 Na+ dependent nucleoside transporter N-terminus BF90_5341 PF07662 Na+ dependent nucleoside transporter C-terminus BF90_5342 PF00591 Glycosyl transferase family, a/b domain BF90_5342 PF02885 Glycosyl transferase family, helical bundle domain BF90_5342 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF90_5343 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF90_5344 PF05979 Bacterial protein of unknown function (DUF896) BF90_5348 PF05195 Aminopeptidase P, N-terminal domain BF90_5348 PF00557 Metallopeptidase family M24 BF90_5349 PF07732 Multicopper oxidase BF90_5349 PF07731 Multicopper oxidase BF90_535 PF02673 Bacitracin resistance protein BacA BF90_5350 PF01551 Peptidase family M23 BF90_5355 PF02525 Flavodoxin-like fold BF90_5356 PF05525 Branched-chain amino acid transport protein BF90_5357 PF05525 Branched-chain amino acid transport protein BF90_5359 PF13115 YtkA-like BF90_5359 PF04234 CopC domain BF90_5359 PF05425 Copper resistance protein D BF90_5360 PF07987 Domain of unkown function (DUF1775) BF90_5362 PF00892 EamA-like transporter family BF90_5363 PF03466 LysR substrate binding domain BF90_5363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_5364 PF02082 Transcriptional regulator BF90_5365 PF01323 DSBA-like thioredoxin domain BF90_5366 PF00881 Nitroreductase family BF90_5368 PF01425 Amidase BF90_5369 PF01594 AI-2E family transporter BF90_537 PF01541 GIY-YIG catalytic domain BF90_5370 PF00056 lactate/malate dehydrogenase, NAD binding domain BF90_5370 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF90_5371 PF01593 Flavin containing amine oxidoreductase BF90_5372 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF90_5372 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF90_5375 PF00501 AMP-binding enzyme BF90_5375 PF13193 AMP-binding enzyme C-terminal domain BF90_5376 PF01575 MaoC like domain BF90_5377 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF90_5377 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF90_5379 PF12399 Branched-chain amino acid ATP-binding cassette transporter BF90_5379 PF00005 ABC transporter BF90_5380 PF00005 ABC transporter BF90_5381 PF02653 Branched-chain amino acid transport system / permease component BF90_5383 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_5383 PF03466 LysR substrate binding domain BF90_5387 PF01047 MarR family BF90_5389 PF01654 Cytochrome bd terminal oxidase subunit I BF90_5390 PF02322 Cytochrome bd terminal oxidase subunit II BF90_5391 PF00664 ABC transporter transmembrane region BF90_5391 PF00005 ABC transporter BF90_5392 PF00005 ABC transporter BF90_5392 PF00664 ABC transporter transmembrane region BF90_5395 PF02016 LD-carboxypeptidase N-terminal domain BF90_5395 PF17676 LD-carboxypeptidase C-terminal domain BF90_5396 PF07943 Penicillin-binding protein 5, C-terminal domain BF90_5396 PF00768 D-alanyl-D-alanine carboxypeptidase BF90_5398 PF00877 NlpC/P60 family BF90_5398 PF01476 LysM domain BF90_5400 PF00664 ABC transporter transmembrane region BF90_5400 PF00005 ABC transporter BF90_5401 PF00664 ABC transporter transmembrane region BF90_5401 PF00005 ABC transporter BF90_5402 PF00072 Response regulator receiver domain BF90_5402 PF00486 Transcriptional regulatory protein, C terminal BF90_5404 PF00989 PAS fold BF90_5404 PF00512 His Kinase A (phospho-acceptor) domain BF90_5404 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_5404 PF16736 Single Cache-like BF90_5406 PF00106 short chain dehydrogenase BF90_5407 PF04439 Streptomycin adenylyltransferase BF90_5408 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF90_5408 PF01522 Polysaccharide deacetylase BF90_5412 PF01842 ACT domain BF90_5412 PF00742 Homoserine dehydrogenase BF90_5412 PF03447 Homoserine dehydrogenase, NAD binding domain BF90_5413 PF00291 Pyridoxal-phosphate dependent enzyme BF90_5414 PF08544 GHMP kinases C terminal BF90_5414 PF00288 GHMP kinases N terminal domain BF90_5417 PF03816 Cell envelope-related transcriptional attenuator domain BF90_5419 PF00072 Response regulator receiver domain BF90_5419 PF00486 Transcriptional regulatory protein, C terminal BF90_5420 PF00512 His Kinase A (phospho-acceptor) domain BF90_5420 PF16736 Single Cache-like BF90_5420 PF00989 PAS fold BF90_5420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_5421 PF01522 Polysaccharide deacetylase BF90_5423 PF02308 MgtC family BF90_5424 PF00583 Acetyltransferase (GNAT) family BF90_5425 PF06276 Ferric iron reductase FhuF-like transporter BF90_5425 PF04183 IucA / IucC family BF90_5426 PF04183 IucA / IucC family BF90_5426 PF06276 Ferric iron reductase FhuF-like transporter BF90_5427 PF13193 AMP-binding enzyme C-terminal domain BF90_5427 PF00501 AMP-binding enzyme BF90_5430 PF01261 Xylose isomerase-like TIM barrel BF90_5431 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF90_5432 PF07690 Major Facilitator Superfamily BF90_5433 PF01810 LysE type translocator BF90_5435 PF01734 Patatin-like phospholipase BF90_5440 PF00293 NUDIX domain BF90_5440 PF13344 Haloacid dehalogenase-like hydrolase BF90_5441 PF02540 NAD synthase BF90_5442 PF02687 FtsX-like permease family BF90_5443 PF18277 AbrB C-terminal domain BF90_5443 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF90_5444 PF00082 Subtilase family BF90_5445 PF01022 Bacterial regulatory protein, arsR family BF90_5446 PF00248 Aldo/keto reductase family BF90_5447 PF07690 Major Facilitator Superfamily BF90_545 PF01266 FAD dependent oxidoreductase BF90_5452 PF03193 RsgA GTPase BF90_5453 PF02743 Cache domain BF90_5453 PF00672 HAMP domain BF90_5453 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF90_5457 PF00210 Ferritin-like domain BF90_5460 PF00296 Luciferase-like monooxygenase BF90_5462 PF01593 Flavin containing amine oxidoreductase BF90_5464 PF00248 Aldo/keto reductase family BF90_5465 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF90_5465 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF90_5466 PF00583 Acetyltransferase (GNAT) family BF90_5476 PF01297 Zinc-uptake complex component A periplasmic BF90_5476 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF90_5478 PF13460 NAD(P)H-binding BF90_5479 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF90_5480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF90_5480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF90_5482 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_5483 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_5485 PF00300 Histidine phosphatase superfamily (branch 1) BF90_5487 PF08757 CotH kinase protein BF90_5488 PF00293 NUDIX domain BF90_5489 PF09335 SNARE associated Golgi protein BF90_5490 PF01943 Polysaccharide biosynthesis protein BF90_5490 PF14667 Polysaccharide biosynthesis C-terminal domain BF90_5492 PF03773 Predicted permease BF90_5493 PF09323 Domain of unknown function (DUF1980) BF90_5494 PF03061 Thioesterase superfamily BF90_5495 PF13091 PLD-like domain BF90_5495 PF13396 Phospholipase_D-nuclease N-terminal BF90_5498 PF13460 NAD(P)H-binding BF90_5499 PF04306 Protein of unknown function (DUF456) BF90_550 PF13419 Haloacid dehalogenase-like hydrolase BF90_5500 PF01595 Cyclin M transmembrane N-terminal domain BF90_5500 PF03471 Transporter associated domain BF90_5500 PF00571 CBS domain BF90_5504 PF05525 Branched-chain amino acid transport protein BF90_5505 PF01588 Putative tRNA binding domain BF90_5509 PF07454 Stage II sporulation protein P (SpoIIP) BF90_5511 PF02557 D-alanyl-D-alanine carboxypeptidase BF90_5513 PF01425 Amidase BF90_5514 PF07690 Major Facilitator Superfamily BF90_5516 PF01145 SPFH domain / Band 7 family BF90_5517 PF00300 Histidine phosphatase superfamily (branch 1) BF90_5520 PF00842 Alanine racemase, C-terminal domain BF90_5520 PF01168 Alanine racemase, N-terminal domain BF90_5524 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF90_5525 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF90_5525 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF90_5526 PF00392 Bacterial regulatory proteins, gntR family BF90_5526 PF00155 Aminotransferase class I and II BF90_553 PF07859 alpha/beta hydrolase fold BF90_5532 PF00583 Acetyltransferase (GNAT) family BF90_554 PF00282 Pyridoxal-dependent decarboxylase conserved domain BF90_5541 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF90_5546 PF01209 ubiE/COQ5 methyltransferase family BF90_5547 PF01268 Formate--tetrahydrofolate ligase BF90_5549 PF00270 DEAD/DEAH box helicase BF90_5549 PF00271 Helicase conserved C-terminal domain BF90_555 PF13193 AMP-binding enzyme C-terminal domain BF90_555 PF00668 Condensation domain BF90_555 PF00501 AMP-binding enzyme BF90_555 PF00550 Phosphopantetheine attachment site BF90_5550 PF01261 Xylose isomerase-like TIM barrel BF90_5551 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_5553 PF08240 Alcohol dehydrogenase GroES-like domain BF90_5553 PF00107 Zinc-binding dehydrogenase BF90_5554 PF08281 Sigma-70, region 4 BF90_5554 PF04542 Sigma-70 region 2 BF90_5559 PF00255 Glutathione peroxidase BF90_5560 PF11992 Domain of unknown function (DUF3488) BF90_5560 PF13559 Domain of unknown function (DUF4129) BF90_5560 PF01841 Transglutaminase-like superfamily BF90_5561 PF01882 Protein of unknown function DUF58 BF90_5562 PF07726 ATPase family associated with various cellular activities (AAA) BF90_5562 PF17863 AAA lid domain BF90_5565 PF14710 Respiratory nitrate reductase alpha N-terminal BF90_5565 PF01568 Molydopterin dinucleotide binding domain BF90_5565 PF00384 Molybdopterin oxidoreductase BF90_5566 PF14711 Respiratory nitrate reductase beta C-terminal BF90_5566 PF13247 4Fe-4S dicluster domain BF90_5567 PF02613 Nitrate reductase delta subunit BF90_5568 PF02665 Nitrate reductase gamma subunit BF90_5569 PF00392 Bacterial regulatory proteins, gntR family BF90_5569 PF00155 Aminotransferase class I and II BF90_5570 PF00005 ABC transporter BF90_5572 PF00027 Cyclic nucleotide-binding domain BF90_5572 PF00325 Bacterial regulatory proteins, crp family BF90_5573 PF04055 Radical SAM superfamily BF90_5573 PF06463 Molybdenum Cofactor Synthesis C BF90_5574 PF00899 ThiF family BF90_5575 PF00899 ThiF family BF90_5576 PF00994 Probable molybdopterin binding domain BF90_5576 PF03453 MoeA N-terminal region (domain I and II) BF90_5576 PF03454 MoeA C-terminal region (domain IV) BF90_5577 PF02391 MoaE protein BF90_5579 PF07690 Major Facilitator Superfamily BF90_558 PF00128 Alpha amylase, catalytic domain BF90_558 PF03714 Bacterial pullanase-associated domain BF90_558 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF90_5583 PF01903 CbiX BF90_5584 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF90_5585 PF00355 Rieske [2Fe-2S] domain BF90_5586 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_5586 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF90_5586 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF90_5586 PF18267 Rubredoxin NAD+ reductase C-terminal domain BF90_5586 PF04324 BFD-like [2Fe-2S] binding domain BF90_5587 PF01814 Hemerythrin HHE cation binding domain BF90_5587 PF04405 Domain of Unknown function (DUF542) BF90_559 PF07504 Fungalysin/Thermolysin Propeptide Motif BF90_559 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF90_559 PF01447 Thermolysin metallopeptidase, catalytic domain BF90_559 PF03413 Peptidase propeptide and YPEB domain BF90_5595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF90_5604 PF08378 Nuclease-related domain BF90_5610 PF13342 C-terminal repeat of topoisomerase BF90_5610 PF01131 DNA topoisomerase BF90_5610 PF01751 Toprim domain BF90_5612 PF00565 Staphylococcal nuclease homologue BF90_5615 PF02600 Disulfide bond formation protein DsbB BF90_5616 PF01022 Bacterial regulatory protein, arsR family BF90_5617 PF17209 Hfq protein BF90_5619 PF18801 response regulator aspartate phosphatase H, N terminal BF90_5624 PF00589 Phage integrase family BF90_5626 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF90_5627 PF01609 Transposase DDE domain BF90_5629 PF00665 Integrase core domain BF90_5629 PF13276 HTH-like domain BF90_5629 PF13333 Integrase core domain BF90_563 PF00344 SecY translocase BF90_5632 PF13333 Integrase core domain BF90_5632 PF13276 HTH-like domain BF90_5632 PF00665 Integrase core domain BF90_5634 PF14436 Bacterial EndoU nuclease BF90_5634 PF04740 LXG domain of WXG superfamily BF90_564 PF00308 Bacterial dnaA protein BF90_564 PF08299 Bacterial dnaA protein helix-turn-helix BF90_564 PF11638 DnaA N-terminal domain BF90_5641 PF02899 Phage integrase, N-terminal SAM-like domain BF90_5641 PF00589 Phage integrase family BF90_5643 PF18277 AbrB C-terminal domain BF90_5643 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF90_5648 PF09156 Anthrax toxin lethal factor, middle domain BF90_5648 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BF90_565 PF00892 EamA-like transporter family BF90_5653 PF01022 Bacterial regulatory protein, arsR family BF90_5654 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 BF90_5654 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain BF90_5654 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 BF90_5654 PF07691 PA14 domain BF90_5656 PF05504 Spore germination B3/ GerAC like, C-terminal BF90_5657 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_5658 PF03845 Spore germination protein BF90_5659 PF00239 Resolvase, N terminal domain BF90_5659 PF02796 Helix-turn-helix domain of resolvase BF90_566 PF00392 Bacterial regulatory proteins, gntR family BF90_566 PF00155 Aminotransferase class I and II BF90_5660 PF01526 Tn3 transposase DDE domain BF90_5660 PF13700 Domain of unknown function (DUF4158) BF90_5664 PF09385 Histidine kinase N terminal BF90_5665 PF09385 Histidine kinase N terminal BF90_5666 PF08279 HTH domain BF90_5666 PF00874 PRD domain BF90_5666 PF05043 Mga helix-turn-helix domain BF90_5667 PF02660 Glycerol-3-phosphate acyltransferase BF90_567 PF00561 alpha/beta hydrolase fold BF90_5672 PF00156 Phosphoribosyl transferase domain BF90_5673 PF00156 Phosphoribosyl transferase domain BF90_5674 PF03497 Anthrax toxin LF subunit BF90_5674 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BF90_5683 PF13333 Integrase core domain BF90_5683 PF13276 HTH-like domain BF90_5683 PF00665 Integrase core domain BF90_5684 PF13333 Integrase core domain BF90_5684 PF00665 Integrase core domain BF90_5684 PF13276 HTH-like domain BF90_5688 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF90_5688 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF90_5688 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF90_5689 PF00483 Nucleotidyl transferase BF90_5690 PF00535 Glycosyl transferase family 2 BF90_5693 PF01569 PAP2 superfamily BF90_5694 PF00395 S-layer homology domain BF90_57 PF02595 Glycerate kinase family BF90_5700 PF04235 Protein of unknown function (DUF418) BF90_5703 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) BF90_572 PF06081 Aromatic acid exporter family member 1 BF90_5730 PF00437 Type II/IV secretion system protein BF90_5749 PF01580 FtsK/SpoIIIE family BF90_5749 PF09397 Ftsk gamma domain BF90_5749 PF17854 FtsK alpha domain BF90_5749 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BF90_575 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF90_5754 PF01609 Transposase DDE domain BF90_5755 PF01609 Transposase DDE domain BF90_5759 PF01609 Transposase DDE domain BF90_576 PF14620 YpeB sporulation BF90_576 PF03413 Peptidase propeptide and YPEB domain BF90_5760 PF01609 Transposase DDE domain BF90_577 PF01471 Putative peptidoglycan binding domain BF90_577 PF07486 Cell Wall Hydrolase BF90_5774 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF90_5795 PF00877 NlpC/P60 family BF90_5797 PF17632 Family of unknown function (DUF5513) BF90_58 PF00939 Sodium:sulfate symporter transmembrane region BF90_580 PF03301 Tryptophan 2,3-dioxygenase BF90_5804 PF17633 Family of unknown function (DUF5514) BF90_5805 PF17630 Family of unknown function (DUF5511) BF90_5806 PF18840 Large polyvalent protein associated domain 25 BF90_5809 PF13154 Protein of unknown function (DUF3991) BF90_581 PF04199 Putative cyclase BF90_5810 PF01751 Toprim domain BF90_5810 PF01131 DNA topoisomerase BF90_5811 PF01751 Toprim domain BF90_5811 PF01131 DNA topoisomerase BF90_5817 PF17443 Uncharacterized protein pXO2-72 BF90_582 PF00266 Aminotransferase class-V BF90_5821 PF11799 impB/mucB/samB family C-terminal domain BF90_5821 PF00817 impB/mucB/samB family BF90_5821 PF11798 IMS family HHH motif BF90_5822 PF13411 MerR HTH family regulatory protein BF90_5822 PF13152 Protein of unknown function (DUF3967) BF90_5825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_5829 PF08280 M protein trans-acting positive regulator (MGA) HTH domain BF90_5829 PF00874 PRD domain BF90_5829 PF05043 Mga helix-turn-helix domain BF90_583 PF08359 YsiA-like protein, C-terminal region BF90_583 PF00440 Bacterial regulatory proteins, tetR family BF90_5830 PF01810 LysE type translocator BF90_5833 PF00874 PRD domain BF90_5833 PF08279 HTH domain BF90_5833 PF05043 Mga helix-turn-helix domain BF90_5834 PF05043 Mga helix-turn-helix domain BF90_5834 PF08279 HTH domain BF90_5834 PF00874 PRD domain BF90_5835 PF09385 Histidine kinase N terminal BF90_5838 PF10502 Signal peptidase, peptidase S26 BF90_584 PF00293 NUDIX domain BF90_584 PF13344 Haloacid dehalogenase-like hydrolase BF90_5840 PF01609 Transposase DDE domain BF90_5841 PF01022 Bacterial regulatory protein, arsR family BF90_5843 PF08245 Mur ligase middle domain BF90_5844 PF14102 Capsule biosynthesis CapC BF90_5845 PF09587 Bacterial capsule synthesis protein PGA_cap BF90_5849 PF05043 Mga helix-turn-helix domain BF90_5849 PF08280 M protein trans-acting positive regulator (MGA) HTH domain BF90_5851 PF01569 PAP2 superfamily BF90_5852 PF01569 PAP2 superfamily BF90_5853 PF01609 Transposase DDE domain BF90_5854 PF01609 Transposase DDE domain BF90_5855 PF00440 Bacterial regulatory proteins, tetR family BF90_5856 PF04463 Protein of unknown function (DUF523) BF90_5857 PF02517 CPBP intramembrane metalloprotease BF90_5858 PF01906 Putative heavy-metal-binding BF90_5862 PF13333 Integrase core domain BF90_5862 PF00665 Integrase core domain BF90_5862 PF13276 HTH-like domain BF90_5863 PF00395 S-layer homology domain BF90_5863 PF01520 N-acetylmuramoyl-L-alanine amidase BF90_5866 PF13614 AAA domain BF90_5867 PF08708 Primase C terminal 1 (PriCT-1) BF90_5871 PF17362 Family of unknown function BF90_5874 PF17631 Family of unknown function (DUF5512) BF90_5883 PF00437 Type II/IV secretion system protein BF90_5889 PF04956 TrbC/VIRB2 family BF90_589 PF00158 Sigma-54 interaction domain BF90_589 PF01590 GAF domain BF90_589 PF02954 Bacterial regulatory protein, Fis family BF90_5892 PF12696 TraM recognition site of TraD and TraG BF90_59 PF00486 Transcriptional regulatory protein, C terminal BF90_59 PF00072 Response regulator receiver domain BF90_592 PF13302 Acetyltransferase (GNAT) domain BF90_593 PF00455 DeoR C terminal sensor domain BF90_593 PF08220 DeoR-like helix-turn-helix domain BF90_596 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF90_596 PF00403 Heavy-metal-associated domain BF90_596 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_597 PF02082 Transcriptional regulator BF90_60 PF00672 HAMP domain BF90_60 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_60 PF00512 His Kinase A (phospho-acceptor) domain BF90_601 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_601 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF90_602 PF00364 Biotin-requiring enzyme BF90_602 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF90_602 PF02817 e3 binding domain BF90_603 PF02780 Transketolase, C-terminal domain BF90_603 PF02779 Transketolase, pyrimidine binding domain BF90_604 PF00676 Dehydrogenase E1 component BF90_606 PF00106 short chain dehydrogenase BF90_607 PF04229 GrpB protein BF90_607 PF13673 Acetyltransferase (GNAT) domain BF90_612 PF00528 Binding-protein-dependent transport system inner membrane component BF90_613 PF00005 ABC transporter BF90_613 PF00571 CBS domain BF90_614 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF90_615 PF00574 Clp protease BF90_618 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF90_619 PF13673 Acetyltransferase (GNAT) domain BF90_620 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF90_620 PF18416 N-acetylglucosamine binding protein domain 2 BF90_624 PF10990 Protein of unknown function (DUF2809) BF90_629 PF00753 Metallo-beta-lactamase superfamily BF90_629 PF03772 Competence protein BF90_629 PF13567 Domain of unknown function (DUF4131) BF90_63 PF00209 Sodium:neurotransmitter symporter family BF90_639 PF13538 UvrD-like helicase C-terminal domain BF90_642 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BF90_643 PF00270 DEAD/DEAH box helicase BF90_643 PF00271 Helicase conserved C-terminal domain BF90_643 PF16124 RecQ zinc-binding BF90_643 PF09382 RQC domain BF90_643 PF00570 HRDC domain BF90_651 PF02833 DHHA2 domain BF90_651 PF01368 DHH family BF90_652 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF90_652 PF18416 N-acetylglucosamine binding protein domain 2 BF90_654 PF02627 Carboxymuconolactone decarboxylase family BF90_655 PF01235 Sodium:alanine symporter family BF90_656 PF00171 Aldehyde dehydrogenase family BF90_657 PF00701 Dihydrodipicolinate synthetase family BF90_658 PF05544 Proline racemase BF90_659 PF05544 Proline racemase BF90_66 PF10997 Alternate to MurJ BF90_660 PF01266 FAD dependent oxidoreductase BF90_661 PF13188 PAS domain BF90_661 PF02954 Bacterial regulatory protein, Fis family BF90_661 PF00158 Sigma-54 interaction domain BF90_663 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF90_663 PF04324 BFD-like [2Fe-2S] binding domain BF90_666 PF08876 Domain of unknown function (DUF1836) BF90_667 PF09335 SNARE associated Golgi protein BF90_67 PF13419 Haloacid dehalogenase-like hydrolase BF90_670 PF04914 DltD protein BF90_671 PF13302 Acetyltransferase (GNAT) domain BF90_671 PF03352 Methyladenine glycosylase BF90_671 PF13673 Acetyltransferase (GNAT) domain BF90_671 PF00958 GMP synthase C terminal domain BF90_671 PF00117 Glutamine amidotransferase class-I BF90_672 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_673 PF00877 NlpC/P60 family BF90_673 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BF90_674 PF13378 Enolase C-terminal domain-like BF90_674 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF90_677 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF90_682 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF90_682 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF90_683 PF00989 PAS fold BF90_683 PF00512 His Kinase A (phospho-acceptor) domain BF90_683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_683 PF16736 Single Cache-like BF90_684 PF00486 Transcriptional regulatory protein, C terminal BF90_684 PF00072 Response regulator receiver domain BF90_688 PF01048 Phosphorylase superfamily BF90_69 PF00465 Iron-containing alcohol dehydrogenase BF90_690 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF90_691 PF01432 Peptidase family M3 BF90_691 PF08439 Oligopeptidase F BF90_694 PF02645 Uncharacterised protein, DegV family COG1307 BF90_698 PF07690 Major Facilitator Superfamily BF90_7 PF04232 Stage V sporulation protein S (SpoVS) BF90_70 PF01177 Asp/Glu/Hydantoin racemase BF90_700 PF04519 Polymer-forming cytoskeletal BF90_701 PF13171 Protein of unknown function (DUF4004) BF90_702 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF90_702 PF12793 Sugar transport-related sRNA regulator N-term BF90_703 PF07690 Major Facilitator Superfamily BF90_707 PF04226 Transglycosylase associated protein BF90_708 PF01156 Inosine-uridine preferring nucleoside hydrolase BF90_71 PF01980 tRNA-methyltransferase O BF90_710 PF08241 Methyltransferase domain BF90_716 PF00155 Aminotransferase class I and II BF90_717 PF07977 FabA-like domain BF90_718 PF03630 Fumble BF90_72 PF00583 Acetyltransferase (GNAT) family BF90_722 PF00005 ABC transporter BF90_731 PF01594 AI-2E family transporter BF90_733 PF00296 Luciferase-like monooxygenase BF90_734 PF00528 Binding-protein-dependent transport system inner membrane component BF90_735 PF09084 NMT1/THI5 like BF90_736 PF09084 NMT1/THI5 like BF90_737 PF00005 ABC transporter BF90_746 PF02522 Aminoglycoside 3-N-acetyltransferase BF90_751 PF13536 Putative multidrug resistance efflux transporter BF90_752 PF12867 DinB superfamily BF90_756 PF08713 DNA alkylation repair enzyme BF90_758 PF01522 Polysaccharide deacetylase BF90_76 PF00005 ABC transporter BF90_760 PF03741 Integral membrane protein TerC family BF90_761 PF00884 Sulfatase BF90_762 PF00005 ABC transporter BF90_762 PF12848 ABC transporter BF90_764 PF03176 MMPL family BF90_765 PF03176 MMPL family BF90_766 PF16295 Tetracyclin repressor-like, C-terminal domain BF90_766 PF00440 Bacterial regulatory proteins, tetR family BF90_768 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF90_769 PF01842 ACT domain BF90_769 PF02153 Prephenate dehydrogenase BF90_77 PF05975 Bacterial ABC transporter protein EcsB BF90_770 PF00155 Aminotransferase class I and II BF90_771 PF01264 Chorismate synthase BF90_772 PF00793 DAHP synthetase I family BF90_772 PF01817 Chorismate mutase type II BF90_777 PF01636 Phosphotransferase enzyme family BF90_78 PF14005 YpjP-like protein BF90_780 PF06725 3D domain BF90_780 PF01476 LysM domain BF90_782 PF08281 Sigma-70, region 4 BF90_782 PF04542 Sigma-70 region 2 BF90_787 PF06039 Malate:quinone oxidoreductase (Mqo) BF90_788 PF13407 Periplasmic binding protein domain BF90_789 PF02653 Branched-chain amino acid transport system / permease component BF90_79 PF13419 Haloacid dehalogenase-like hydrolase BF90_790 PF02653 Branched-chain amino acid transport system / permease component BF90_791 PF00005 ABC transporter BF90_792 PF00325 Bacterial regulatory proteins, crp family BF90_792 PF04198 Putative sugar-binding domain BF90_793 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF90_793 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF90_795 PF01791 DeoC/LacD family aldolase BF90_799 PF03992 Antibiotic biosynthesis monooxygenase BF90_803 PF07662 Na+ dependent nucleoside transporter C-terminus BF90_803 PF01773 Na+ dependent nucleoside transporter N-terminus BF90_804 PF00171 Aldehyde dehydrogenase family BF90_805 PF00696 Amino acid kinase family BF90_805 PF01472 PUA domain BF90_806 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF90_806 PF03807 NADP oxidoreductase coenzyme F420-dependent BF90_807 PF01546 Peptidase family M20/M25/M40 BF90_808 PF09339 IclR helix-turn-helix domain BF90_808 PF01614 Bacterial transcriptional regulator BF90_809 PF00324 Amino acid permease BF90_810 PF01139 tRNA-splicing ligase RtcB BF90_811 PF00487 Fatty acid desaturase BF90_812 PF00245 Alkaline phosphatase BF90_813 PF11188 Protein of unknown function (DUF2975) BF90_814 PF13443 Cro/C1-type HTH DNA-binding domain BF90_817 PF10086 YhfC intramembrane metalloprotease BF90_819 PF00072 Response regulator receiver domain BF90_819 PF04397 LytTr DNA-binding domain BF90_821 PF13302 Acetyltransferase (GNAT) domain BF90_822 PF12681 Glyoxalase-like domain BF90_826 PF07726 ATPase family associated with various cellular activities (AAA) BF90_826 PF17863 AAA lid domain BF90_829 PF07690 Major Facilitator Superfamily BF90_83 PF00144 Beta-lactamase BF90_83 PF07930 D-aminopeptidase, domain B BF90_831 PF00535 Glycosyl transferase family 2 BF90_834 PF00535 Glycosyl transferase family 2 BF90_836 PF00535 Glycosyl transferase family 2 BF90_838 PF00202 Aminotransferase class-III BF90_839 PF00199 Catalase BF90_839 PF06628 Catalase-related immune-responsive BF90_84 PF00303 Thymidylate synthase BF90_841 PF01979 Amidohydrolase family BF90_841 PF13382 Adenine deaminase C-terminal domain BF90_842 PF00144 Beta-lactamase BF90_847 PF17863 AAA lid domain BF90_847 PF07726 ATPase family associated with various cellular activities (AAA) BF90_849 PF00881 Nitroreductase family BF90_85 PF00186 Dihydrofolate reductase BF90_850 PF01047 MarR family BF90_851 PF03764 Elongation factor G, domain IV BF90_851 PF00009 Elongation factor Tu GTP binding domain BF90_851 PF14492 Elongation Factor G, domain II BF90_851 PF00679 Elongation factor G C-terminus BF90_853 PF00293 NUDIX domain BF90_856 PF00005 ABC transporter BF90_857 PF00392 Bacterial regulatory proteins, gntR family BF90_859 PF00005 ABC transporter BF90_859 PF02687 FtsX-like permease family BF90_859 PF12704 MacB-like periplasmic core domain BF90_86 PF00905 Penicillin binding protein transpeptidase domain BF90_86 PF03717 Penicillin-binding Protein dimerisation domain BF90_86 PF05223 NTF2-like N-terminal transpeptidase domain BF90_864 PF12833 Helix-turn-helix domain BF90_865 PF00583 Acetyltransferase (GNAT) family BF90_868 PF00892 EamA-like transporter family BF90_869 PF00392 Bacterial regulatory proteins, gntR family BF90_869 PF00155 Aminotransferase class I and II BF90_87 PF02525 Flavodoxin-like fold BF90_870 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BF90_871 PF13031 Protein of unknown function (DUF3892) BF90_873 PF00672 HAMP domain BF90_873 PF00512 His Kinase A (phospho-acceptor) domain BF90_874 PF00072 Response regulator receiver domain BF90_874 PF00486 Transcriptional regulatory protein, C terminal BF90_875 PF00561 alpha/beta hydrolase fold BF90_88 PF01553 Acyltransferase BF90_881 PF01925 Sulfite exporter TauE/SafE BF90_882 PF13302 Acetyltransferase (GNAT) domain BF90_883 PF00324 Amino acid permease BF90_885 PF08713 DNA alkylation repair enzyme BF90_886 PF10898 Protein of unknown function (DUF2716) BF90_89 PF03006 Haemolysin-III related BF90_890 PF00293 NUDIX domain BF90_892 PF10502 Signal peptidase, peptidase S26 BF90_895 PF02146 Sir2 family BF90_896 PF01470 Pyroglutamyl peptidase BF90_897 PF01470 Pyroglutamyl peptidase BF90_90 PF02416 mttA/Hcf106 family BF90_901 PF03746 LamB/YcsF family BF90_902 PF02626 Carboxyltransferase domain, subdomain A and B BF90_903 PF02626 Carboxyltransferase domain, subdomain A and B BF90_904 PF02682 Carboxyltransferase domain, subdomain C and D BF90_905 PF09339 IclR helix-turn-helix domain BF90_905 PF01614 Bacterial transcriptional regulator BF90_906 PF10502 Signal peptidase, peptidase S26 BF90_907 PF03932 CutC family BF90_908 PF07454 Stage II sporulation protein P (SpoIIP) BF90_91 PF00902 Sec-independent protein translocase protein (TatC) BF90_911 PF02770 Acyl-CoA dehydrogenase, middle domain BF90_911 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BF90_911 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF90_918 PF02915 Rubrerythrin BF90_920 PF00440 Bacterial regulatory proteins, tetR family BF90_921 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF90_921 PF00391 PEP-utilising enzyme, mobile domain BF90_922 PF00753 Metallo-beta-lactamase superfamily BF90_925 PF07875 Coat F domain BF90_927 PF08892 YqcI/YcgG family BF90_928 PF01810 LysE type translocator BF90_929 PF00324 Amino acid permease BF90_93 PF02645 Uncharacterised protein, DegV family COG1307 BF90_930 PF00324 Amino acid permease BF90_932 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF90_933 PF10710 Protein of unknown function (DUF2512) BF90_934 PF11553 Protein of unknown function (DUF3231) BF90_935 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF90_936 PF08240 Alcohol dehydrogenase GroES-like domain BF90_936 PF00107 Zinc-binding dehydrogenase BF90_936 PF13823 Alcohol dehydrogenase GroES-associated BF90_939 PF10415 Fumarase C C-terminus BF90_939 PF00206 Lyase BF90_940 PF17763 Glutaminase/Asparaginase C-terminal domain BF90_940 PF00710 Asparaginase, N-terminal BF90_941 PF01381 Helix-turn-helix BF90_943 PF12826 Helix-hairpin-helix motif BF90_943 PF01541 GIY-YIG catalytic domain BF90_943 PF02151 UvrB/uvrC motif BF90_943 PF08459 UvrC Helix-hairpin-helix N-terminal BF90_944 PF13520 Amino acid permease BF90_945 PF05525 Branched-chain amino acid transport protein BF90_946 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF90_946 PF03807 NADP oxidoreductase coenzyme F420-dependent BF90_947 PF13564 DoxX-like family BF90_948 PF03949 Malic enzyme, NAD binding domain BF90_948 PF00390 Malic enzyme, N-terminal domain BF90_95 PF02630 SCO1/SenC BF90_950 PF05504 Spore germination B3/ GerAC like, C-terminal BF90_951 PF03845 Spore germination protein BF90_952 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_953 PF03323 Bacillus/Clostridium GerA spore germination protein BF90_954 PF00072 Response regulator receiver domain BF90_954 PF08664 YcbB domain BF90_955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF90_956 PF04960 Glutaminase BF90_958 PF01235 Sodium:alanine symporter family BF90_96 PF00011 Hsp20/alpha crystallin family BF90_964 PF00149 Calcineurin-like phosphoesterase BF90_964 PF02872 5'-nucleotidase, C-terminal domain BF90_964 PF17936 Bacterial Ig domain BF90_965 PF06628 Catalase-related immune-responsive BF90_965 PF00199 Catalase BF90_966 PF00561 alpha/beta hydrolase fold BF90_967 PF00857 Isochorismatase family BF90_97 PF13537 Glutamine amidotransferase domain BF90_97 PF00733 Asparagine synthase BF90_970 PF01979 Amidohydrolase family BF90_971 PF03466 LysR substrate binding domain BF90_971 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF90_972 PF01047 MarR family BF90_973 PF01544 CorA-like Mg2+ transporter protein BF90_976 PF11181 Heat induced stress protein YflT BF90_979 PF03073 TspO/MBR family BF90_980 PF03441 FAD binding domain of DNA photolyase BF90_980 PF00875 DNA photolyase BF90_982 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BF90_983 PF00361 Proton-conducting membrane transporter BF90_983 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF90_984 PF10057 Uncharacterized conserved protein (DUF2294) BF90_986 PF01040 UbiA prenyltransferase family BF90_987 PF00561 alpha/beta hydrolase fold BF90_988 PF01297 Zinc-uptake complex component A periplasmic BF90_989 PF00950 ABC 3 transport family BF90_990 PF00005 ABC transporter BF90_995 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF90_996 PF01758 Sodium Bile acid symporter family BF90_997 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF90_998 PF01022 Bacterial regulatory protein, arsR family