BF90_1001 SM00028 Tetratricopeptide repeats BF90_1005 SM00344 helix_turn_helix ASNC type BF90_1013 SM00342 helix_turn_helix, arabinose operon control protein BF90_1018 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_1025 SM00448 cheY-homologous receiver domain BF90_1025 SM00862 Transcriptional regulatory protein, C terminal BF90_1026 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_1026 SM00387 Histidine kinase-like ATPases BF90_1026 SM00388 His Kinase A (phosphoacceptor) domain BF90_1037 SM00530 Helix-turn-helix XRE-family like proteins BF90_1047 SM00382 ATPases associated with a variety of cellular activities BF90_1049 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_1051 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_1051 SM00387 Histidine kinase-like ATPases BF90_1051 SM00388 His Kinase A (phosphoacceptor) domain BF90_1052 SM00448 cheY-homologous receiver domain BF90_1052 SM00862 Transcriptional regulatory protein, C terminal BF90_1054 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_1073 SM00354 helix_turn _helix lactose operon repressor BF90_1074 SM00028 Tetratricopeptide repeats BF90_1081 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_1081 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_1081 SM00319 Homologues of the ligand binding domain of Tar BF90_1086 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF90_1092 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF90_1102 SM00344 helix_turn_helix ASNC type BF90_111 SM00421 helix_turn_helix, Lux Regulon BF90_111 SM00448 cheY-homologous receiver domain BF90_1114 SM00342 helix_turn_helix, arabinose operon control protein BF90_1117 SM00287 Bacterial SH3 domain homologues BF90_1127 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_1132 SM00382 ATPases associated with a variety of cellular activities BF90_1134 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_114 SM00829 Enoylreductase BF90_1148 SM00382 ATPases associated with a variety of cellular activities BF90_1158 SM00530 Helix-turn-helix XRE-family like proteins BF90_1159 SM01207 BF90_1159 BF90_1171 SM00382 ATPases associated with a variety of cellular activities BF90_1174 SM00530 Helix-turn-helix XRE-family like proteins BF90_1186 SM01266 BF90_1186 BF90_1188 SM00382 ATPases associated with a variety of cellular activities BF90_1199 SM00028 Tetratricopeptide repeats BF90_1204 SM01091 Transporter associated domain BF90_1205 SM00422 helix_turn_helix, mercury resistance BF90_1213 SM01350 BF90_1213 BF90_1214 SM00861 Transketolase, pyrimidine binding domain BF90_1217 SM00829 Enoylreductase BF90_1220 SM00829 Enoylreductase BF90_1223 SM01276 BF90_1223 BF90_1232 SM00914 BF90_1232 BF90_1238 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_1238 SM00866 BF90_1238 BF90_1245 SM00849 Metallo-beta-lactamase superfamily BF90_1258 SM00248 ankyrin repeats BF90_1259 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_1260 SM00636 BF90_1260 BF90_1268 SM00871 Bacterial transcription activator, effector binding domain BF90_127 SM00382 ATPases associated with a variety of cellular activities BF90_1272 SM00382 ATPases associated with a variety of cellular activities BF90_1278 SM00849 Metallo-beta-lactamase superfamily BF90_1279 SM00641 Glycosyl hydrolases family 25 BF90_1293 SM00849 Metallo-beta-lactamase superfamily BF90_1294 SM00829 Enoylreductase BF90_13 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_1319 SM00829 Enoylreductase BF90_1320 SM00855 Phosphoglycerate mutase family BF90_1322 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF90_1322 SM00534 ATPase domain of DNA mismatch repair MUTS family BF90_1324 SM00642 Alpha-amylase domain BF90_1339 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_1340 SM00829 Enoylreductase BF90_1342 SM00028 Tetratricopeptide repeats BF90_135 SM01091 Transporter associated domain BF90_1358 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF90_1367 SM00479 BF90_1367 BF90_1368 SM00357 Cold shock protein domain BF90_1373 SM01022 BF90_1373 BF90_138 SM00387 Histidine kinase-like ATPases BF90_138 SM00388 His Kinase A (phosphoacceptor) domain BF90_1396 SM00852 Probable molybdopterin binding domain BF90_1399 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_14 SM00382 ATPases associated with a variety of cellular activities BF90_1403 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF90_1403 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF90_141 SM00882 Coenzyme A transferase BF90_142 SM00882 Coenzyme A transferase BF90_1424 SM00382 ATPases associated with a variety of cellular activities BF90_1427 SM00434 DNA Topoisomerase IV BF90_1428 SM00387 Histidine kinase-like ATPases BF90_1428 SM00433 TopoisomeraseII BF90_1429 SM00881 CoA binding domain BF90_1430 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF90_1431 SM00448 cheY-homologous receiver domain BF90_1431 SM00862 Transcriptional regulatory protein, C terminal BF90_1434 SM01207 BF90_1434 BF90_1437 SM00257 Lysin motif BF90_1437 SM00636 BF90_1437 BF90_1441 SM00479 BF90_1441 BF90_1444 SM00382 ATPases associated with a variety of cellular activities BF90_145 SM00382 ATPases associated with a variety of cellular activities BF90_1452 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF90_1465 SM00644 BF90_1465 BF90_1465 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF90_1466 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF90_1469 SM00091 PAS domain BF90_1469 SM00387 Histidine kinase-like ATPases BF90_1469 SM00388 His Kinase A (phosphoacceptor) domain BF90_1475 SM01058 CarD-like/TRCF domain BF90_1502 SM00644 BF90_1502 BF90_1505 SM00382 ATPases associated with a variety of cellular activities BF90_1506 SM00382 ATPases associated with a variety of cellular activities BF90_1509 SM00861 Transketolase, pyrimidine binding domain BF90_1513 SM00382 ATPases associated with a variety of cellular activities BF90_1514 SM00062 Bacterial periplasmic substrate-binding proteins BF90_1518 SM00857 Resolvase, N terminal domain BF90_1524 SM00028 Tetratricopeptide repeats BF90_153 SM00219 Tyrosine kinase, catalytic domain BF90_1530 SM00287 Bacterial SH3 domain homologues BF90_1530 SM00644 BF90_1530 BF90_156 SM00014 Acid phosphatase homologues BF90_1560 SM00530 Helix-turn-helix XRE-family like proteins BF90_1576 SM00382 ATPases associated with a variety of cellular activities BF90_158 SM00860 SMI1 / KNR4 family BF90_1586 SM00530 Helix-turn-helix XRE-family like proteins BF90_1587 SM00530 Helix-turn-helix XRE-family like proteins BF90_1592 SM01230 BF90_1592 BF90_1593 SM00422 helix_turn_helix, mercury resistance BF90_1598 SM00382 ATPases associated with a variety of cellular activities BF90_1604 SM00287 Bacterial SH3 domain homologues BF90_1607 SM00420 helix_turn_helix, Deoxyribose operon repressor BF90_1607 SM01134 BF90_1607 BF90_1619 SM00411 bacterial (prokaryotic) histone like domain BF90_1625 SM00382 ATPases associated with a variety of cellular activities BF90_163 SM00530 Helix-turn-helix XRE-family like proteins BF90_1632 SM00342 helix_turn_helix, arabinose operon control protein BF90_1634 SM00478 endonuclease III BF90_1642 SM00091 PAS domain BF90_1643 SM00052 Putative diguanylate phosphodiesterase BF90_1643 SM00267 diguanylate cyclase BF90_1648 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_1652 SM00148 Phospholipase C, catalytic domain (part); domain X BF90_1654 SM00257 Lysin motif BF90_1660 SM00387 Histidine kinase-like ATPases BF90_1660 SM00388 His Kinase A (phosphoacceptor) domain BF90_1661 SM00448 cheY-homologous receiver domain BF90_1661 SM00862 Transcriptional regulatory protein, C terminal BF90_1664 SM00382 ATPases associated with a variety of cellular activities BF90_1665 SM00853 MutL C terminal dimerisation domain BF90_1665 SM01340 BF90_1665 BF90_1666 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF90_1666 SM00534 ATPase domain of DNA mismatch repair MUTS family BF90_1669 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_1675 SM00322 K homology RNA-binding domain BF90_1675 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_1677 SM00382 ATPases associated with a variety of cellular activities BF90_1678 SM00852 Probable molybdopterin binding domain BF90_1689 SM00382 ATPases associated with a variety of cellular activities BF90_1691 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_1691 SM00866 BF90_1691 BF90_1692 SM00382 ATPases associated with a variety of cellular activities BF90_1692 SM00843 BF90_1692 BF90_1695 SM00849 Metallo-beta-lactamase superfamily BF90_1696 SM01130 BF90_1696 BF90_1698 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF90_1704 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_1704 SM00322 K homology RNA-binding domain BF90_1705 SM01387 BF90_1705 BF90_1706 SM00904 Riboflavin kinase BF90_1713 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_1713 SM00322 K homology RNA-binding domain BF90_1715 SM00479 BF90_1715 BF90_1715 SM00481 DNA polymerase alpha chain like domain BF90_1717 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF90_1726 SM00382 ATPases associated with a variety of cellular activities BF90_1726 SM01086 C-terminal, D2-small domain, of ClpB protein BF90_1730 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF90_1730 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF90_1730 SM00493 BF90_1730 BF90_1732 SM00881 CoA binding domain BF90_174 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF90_1742 SM00382 ATPases associated with a variety of cellular activities BF90_1742 SM00962 SRP54-type protein, GTPase domain BF90_1742 SM00963 SRP54-type protein, helical bundle domain BF90_1744 SM00382 ATPases associated with a variety of cellular activities BF90_1744 SM00962 SRP54-type protein, GTPase domain BF90_1744 SM00963 SRP54-type protein, helical bundle domain BF90_1745 SM00968 SMC proteins Flexible Hinge Domain BF90_1746 SM00358 Double-stranded RNA binding motif BF90_1746 SM00535 Ribonuclease III family BF90_1748 SM00822 BF90_1748 BF90_1749 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF90_1752 SM00487 DEAD-like helicases superfamily BF90_1752 SM00490 helicase superfamily c-terminal domain BF90_1753 SM01120 BF90_1753 BF90_1753 SM01121 BF90_1753 BF90_1756 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF90_1759 SM00220 Serine/Threonine protein kinases, catalytic domain BF90_1759 SM00740 BF90_1759 BF90_1760 SM00331 Sigma factor PP2C-like phosphatases BF90_1760 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF90_1765 SM00487 DEAD-like helicases superfamily BF90_1765 SM00490 helicase superfamily c-terminal domain BF90_1767 SM01409 BF90_1767 BF90_1768 SM00072 Guanylate kinase homologues. BF90_1771 SM00831 Cation transporter/ATPase, N-terminus BF90_1780 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF90_1783 SM00851 MGS-like domain BF90_1783 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF90_1783 SM01209 BF90_1783 BF90_1784 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF90_1789 SM00363 S4 RNA-binding domain BF90_1794 SM00363 S4 RNA-binding domain BF90_1803 SM00864 Tubulin/FtsZ family, GTPase domain BF90_1803 SM00865 Tubulin/FtsZ family, C-terminal domain BF90_1804 SM00842 Cell division protein FtsA BF90_1812 SM00740 BF90_1812 BF90_1813 SM00740 BF90_1813 BF90_1819 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF90_1827 SM00530 Helix-turn-helix XRE-family like proteins BF90_1830 SM00644 BF90_1830 BF90_1853 SM00507 HNH nucleases BF90_1862 SM00530 Helix-turn-helix XRE-family like proteins BF90_1876 SM00382 ATPases associated with a variety of cellular activities BF90_1880 SM00530 Helix-turn-helix XRE-family like proteins BF90_1881 SM00530 Helix-turn-helix XRE-family like proteins BF90_1885 SM00530 Helix-turn-helix XRE-family like proteins BF90_1891 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF90_1900 SM00855 Phosphoglycerate mutase family BF90_1913 SM00878 Biotin carboxylase C-terminal domain BF90_1917 SM00670 Large family of predicted nucleotide-binding domains BF90_1922 SM00838 Elongation factor G C-terminus BF90_1938 SM00861 Transketolase, pyrimidine binding domain BF90_1944 SM00849 Metallo-beta-lactamase superfamily BF90_1957 SM00052 Putative diguanylate phosphodiesterase BF90_1966 SM00267 diguanylate cyclase BF90_1975 SM00387 Histidine kinase-like ATPases BF90_1975 SM00388 His Kinase A (phosphoacceptor) domain BF90_1978 SM00354 helix_turn _helix lactose operon repressor BF90_1982 SM00642 Alpha-amylase domain BF90_1983 SM00642 Alpha-amylase domain BF90_1984 SM00382 ATPases associated with a variety of cellular activities BF90_1991 SM00382 ATPases associated with a variety of cellular activities BF90_2008 SM01007 Class II Aldolase and Adducin N-terminal domain BF90_2014 SM00267 diguanylate cyclase BF90_202 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_2021 SM01061 CAT RNA binding domain BF90_2023 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_2023 SM00866 BF90_2023 BF90_2026 SM00849 Metallo-beta-lactamase superfamily BF90_2045 SM00387 Histidine kinase-like ATPases BF90_2047 SM00936 Penicillin-binding protein 5, C-terminal domain BF90_2048 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_2049 SM00382 ATPases associated with a variety of cellular activities BF90_2052 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_2056 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF90_2075 SM00354 helix_turn _helix lactose operon repressor BF90_2079 SM00704 CDGSH-type zinc finger. Function unknown. BF90_2085 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_2085 SM00876 Biotin and Thiamin Synthesis associated domain BF90_2095 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_21 SM00567 E-Z type HEAT repeats BF90_21 SM00932 Scaffold protein Nfu/NifU N terminal BF90_210 SM00823 Phosphopantetheine attachment site BF90_210 SM00824 Thioesterase BF90_2102 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF90_2105 SM00849 Metallo-beta-lactamase superfamily BF90_2109 SM00849 Metallo-beta-lactamase superfamily BF90_211 SM00923 MbtH-like protein BF90_2118 SM00382 ATPases associated with a variety of cellular activities BF90_2120 SM00062 Bacterial periplasmic substrate-binding proteins BF90_2120 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF90_2126 SM00861 Transketolase, pyrimidine binding domain BF90_2130 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF90_2132 SM00091 PAS domain BF90_2132 SM00382 ATPases associated with a variety of cellular activities BF90_2137 SM00448 cheY-homologous receiver domain BF90_2138 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF90_2141 SM00363 S4 RNA-binding domain BF90_2142 SM00861 Transketolase, pyrimidine binding domain BF90_2149 SM00878 Biotin carboxylase C-terminal domain BF90_215 SM00411 bacterial (prokaryotic) histone like domain BF90_2159 SM00382 ATPases associated with a variety of cellular activities BF90_2163 SM00841 Elongation factor P, C-terminal BF90_2163 SM01185 BF90_2163 BF90_2170 SM00529 Helix-turn-helix diphteria tox regulatory element BF90_2174 SM00450 Rhodanese Homology Domain BF90_2175 SM00354 helix_turn _helix lactose operon repressor BF90_2185 SM00382 ATPases associated with a variety of cellular activities BF90_2186 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_2192 SM00487 DEAD-like helicases superfamily BF90_2192 SM00490 helicase superfamily c-terminal domain BF90_2199 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF90_2206 SM00382 ATPases associated with a variety of cellular activities BF90_2217 SM01018 B12 binding domain BF90_2223 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_2225 SM00849 Metallo-beta-lactamase superfamily BF90_2233 SM00382 ATPases associated with a variety of cellular activities BF90_224 SM00363 S4 RNA-binding domain BF90_2246 SM00382 ATPases associated with a variety of cellular activities BF90_2249 SM00518 AP endonuclease family 2 BF90_225 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF90_2250 SM00487 DEAD-like helicases superfamily BF90_2250 SM00490 helicase superfamily c-terminal domain BF90_2257 SM00400 zinc finger BF90_2257 SM00493 BF90_2257 BF90_2257 SM00766 DNA primase DnaG DnaB-binding BF90_2259 SM00116 Domain in cystathionine beta-synthase and other proteins. BF90_2266 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_2272 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_2275 SM00271 DnaJ molecular chaperone homology domain BF90_2279 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_2281 SM00838 Elongation factor G C-terminus BF90_2290 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF90_2294 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_2296 SM01103 BF90_2296 BF90_2307 SM00954 Region found in RelA / SpoT proteins BF90_2309 SM00098 Alkaline phosphatase homologues BF90_2314 SM00855 Phosphoglycerate mutase family BF90_2323 SM00530 Helix-turn-helix XRE-family like proteins BF90_2328 SM00382 ATPases associated with a variety of cellular activities BF90_2347 SM00732 Likely ribonuclease with RNase H fold. BF90_2349 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF90_2356 SM00028 Tetratricopeptide repeats BF90_2360 SM00382 ATPases associated with a variety of cellular activities BF90_2367 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_2367 SM00954 Region found in RelA / SpoT proteins BF90_2376 SM01323 BF90_2376 BF90_238 SM00849 Metallo-beta-lactamase superfamily BF90_2380 SM00382 ATPases associated with a variety of cellular activities BF90_2381 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF90_2386 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_2389 SM00257 Lysin motif BF90_2399 SM00382 ATPases associated with a variety of cellular activities BF90_2400 SM00387 Histidine kinase-like ATPases BF90_2402 SM00448 cheY-homologous receiver domain BF90_2402 SM00862 Transcriptional regulatory protein, C terminal BF90_2404 SM01317 BF90_2404 BF90_2422 SM00257 Lysin motif BF90_2424 SM01004 Delta-aminolevulinic acid dehydratase BF90_2429 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_2432 SM00382 ATPases associated with a variety of cellular activities BF90_2432 SM00464 Found in ATP-dependent protease La (LON) BF90_2433 SM00382 ATPases associated with a variety of cellular activities BF90_2434 SM00382 ATPases associated with a variety of cellular activities BF90_2434 SM00994 ClpX C4-type zinc finger BF90_2434 SM01086 C-terminal, D2-small domain, of ClpB protein BF90_244 SM00849 Metallo-beta-lactamase superfamily BF90_2446 SM00909 Sporulation and spore germination BF90_2453 SM00421 helix_turn_helix, Lux Regulon BF90_2461 SM00382 ATPases associated with a variety of cellular activities BF90_2462 SM00382 ATPases associated with a variety of cellular activities BF90_2464 SM00342 helix_turn_helix, arabinose operon control protein BF90_2464 SM00448 cheY-homologous receiver domain BF90_2468 SM00530 Helix-turn-helix XRE-family like proteins BF90_2473 SM00382 ATPases associated with a variety of cellular activities BF90_248 SM01059 Chloramphenicol acetyltransferase BF90_2484 SM00465 GIY-YIG type nucleases (URI domain) BF90_2486 SM00893 Electron transfer flavoprotein domain BF90_2487 SM00893 Electron transfer flavoprotein domain BF90_25 SM00836 DALR anticodon binding domain BF90_25 SM01016 Arginyl tRNA synthetase N terminal dom BF90_2500 SM00382 ATPases associated with a variety of cellular activities BF90_2501 SM00387 Histidine kinase-like ATPases BF90_2501 SM00388 His Kinase A (phosphoacceptor) domain BF90_2502 SM00448 cheY-homologous receiver domain BF90_2502 SM00862 Transcriptional regulatory protein, C terminal BF90_2505 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF90_2509 SM00382 ATPases associated with a variety of cellular activities BF90_2512 SM00725 NEAr Transporter domain BF90_2513 SM00725 NEAr Transporter domain BF90_2514 SM00725 NEAr Transporter domain BF90_2515 SM00725 NEAr Transporter domain BF90_2517 SM00363 S4 RNA-binding domain BF90_2519 SM00463 Small MutS-related domain BF90_2519 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF90_2519 SM00534 ATPase domain of DNA mismatch repair MUTS family BF90_2520 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF90_2520 SM00481 DNA polymerase alpha chain like domain BF90_2520 SM00483 DNA polymerase X family BF90_2528 SM00873 B3/4 domain BF90_2528 SM00874 tRNA synthetase B5 domain BF90_2528 SM00896 Ferredoxin-fold anticodon binding domain BF90_253 SM00530 Helix-turn-helix XRE-family like proteins BF90_2530 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF90_2545 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF90_2547 SM00382 ATPases associated with a variety of cellular activities BF90_2551 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF90_2554 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF90_2554 SM01232 BF90_2554 BF90_2555 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF90_2555 SM00474 3'-5' exonuclease BF90_2555 SM00475 5'-3' exonuclease BF90_2555 SM00482 DNA polymerase A domain BF90_2556 SM00091 PAS domain BF90_2556 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_2556 SM00387 Histidine kinase-like ATPases BF90_2556 SM00388 His Kinase A (phosphoacceptor) domain BF90_2557 SM00448 cheY-homologous receiver domain BF90_2557 SM00862 Transcriptional regulatory protein, C terminal BF90_2561 SM01329 BF90_2561 BF90_2570 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_2571 SM00919 Malic enzyme, NAD binding domain BF90_2571 SM01274 BF90_2571 BF90_2572 SM00481 DNA polymerase alpha chain like domain BF90_2579 SM00116 Domain in cystathionine beta-synthase and other proteins. BF90_2581 SM00849 Metallo-beta-lactamase superfamily BF90_2592 SM00530 Helix-turn-helix XRE-family like proteins BF90_2594 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF90_2594 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF90_261 SM00357 Cold shock protein domain BF90_2618 SM00981 BF90_2618 BF90_2627 SM00363 S4 RNA-binding domain BF90_2627 SM01390 BF90_2627 BF90_2630 SM00363 S4 RNA-binding domain BF90_2636 SM00116 Domain in cystathionine beta-synthase and other proteins. BF90_2639 SM00448 cheY-homologous receiver domain BF90_2639 SM00862 Transcriptional regulatory protein, C terminal BF90_2640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_2640 SM00387 Histidine kinase-like ATPases BF90_2640 SM00388 His Kinase A (phosphoacceptor) domain BF90_2641 SM00248 ankyrin repeats BF90_2648 SM00354 helix_turn _helix lactose operon repressor BF90_2659 SM00843 BF90_2659 BF90_2667 SM00849 Metallo-beta-lactamase superfamily BF90_2671 SM00642 Alpha-amylase domain BF90_2674 SM00420 helix_turn_helix, Deoxyribose operon repressor BF90_2675 SM00363 S4 RNA-binding domain BF90_2679 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_2684 SM01058 CarD-like/TRCF domain BF90_2691 SM00852 Probable molybdopterin binding domain BF90_2694 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_2698 SM00450 Rhodanese Homology Domain BF90_2713 SM00382 ATPases associated with a variety of cellular activities BF90_2717 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_2719 SM00382 ATPases associated with a variety of cellular activities BF90_2727 SM00014 Acid phosphatase homologues BF90_2730 SM00852 Probable molybdopterin binding domain BF90_274 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF90_2741 SM00387 Histidine kinase-like ATPases BF90_2742 SM00387 Histidine kinase-like ATPases BF90_2742 SM00388 His Kinase A (phosphoacceptor) domain BF90_2748 SM00382 ATPases associated with a variety of cellular activities BF90_2760 SM00947 Carbonic anhydrase BF90_2761 SM01234 BF90_2761 BF90_2765 SM00894 Excalibur calcium-binding domain BF90_2777 SM00899 BF90_2777 BF90_2779 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_2779 SM00387 Histidine kinase-like ATPases BF90_2779 SM00388 His Kinase A (phosphoacceptor) domain BF90_2780 SM00448 cheY-homologous receiver domain BF90_2780 SM00862 Transcriptional regulatory protein, C terminal BF90_2786 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF90_2796 SM00382 ATPases associated with a variety of cellular activities BF90_2797 SM00342 helix_turn_helix, arabinose operon control protein BF90_2797 SM00871 Bacterial transcription activator, effector binding domain BF90_2798 SM00448 cheY-homologous receiver domain BF90_2798 SM00862 Transcriptional regulatory protein, C terminal BF90_2799 SM00387 Histidine kinase-like ATPases BF90_2802 SM00382 ATPases associated with a variety of cellular activities BF90_2807 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_2807 SM00866 BF90_2807 BF90_281 SM00382 ATPases associated with a variety of cellular activities BF90_2815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_2815 SM00387 Histidine kinase-like ATPases BF90_2815 SM00388 His Kinase A (phosphoacceptor) domain BF90_2816 SM00448 cheY-homologous receiver domain BF90_2816 SM00862 Transcriptional regulatory protein, C terminal BF90_2817 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF90_282 SM00382 ATPases associated with a variety of cellular activities BF90_2825 SM00357 Cold shock protein domain BF90_2833 SM00642 Alpha-amylase domain BF90_284 SM00646 BF90_284 BF90_286 SM00530 Helix-turn-helix XRE-family like proteins BF90_2866 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_2868 SM00344 helix_turn_helix ASNC type BF90_2875 SM01298 BF90_2875 BF90_2876 SM00479 BF90_2876 BF90_289 SM00835 Cupin BF90_2895 SM00871 Bacterial transcription activator, effector binding domain BF90_29 SM00028 Tetratricopeptide repeats BF90_2905 SM00382 ATPases associated with a variety of cellular activities BF90_2910 SM00860 SMI1 / KNR4 family BF90_2923 SM00420 helix_turn_helix, Deoxyribose operon repressor BF90_2930 SM00422 helix_turn_helix, mercury resistance BF90_2933 SM00855 Phosphoglycerate mutase family BF90_2935 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_2946 SM00382 ATPases associated with a variety of cellular activities BF90_2950 SM00382 ATPases associated with a variety of cellular activities BF90_2950 SM00930 BF90_2950 BF90_2953 SM00493 BF90_2953 BF90_2971 SM00849 Metallo-beta-lactamase superfamily BF90_2980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_2980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_2994 SM00530 Helix-turn-helix XRE-family like proteins BF90_2999 SM00448 cheY-homologous receiver domain BF90_2999 SM00862 Transcriptional regulatory protein, C terminal BF90_30 SM00028 Tetratricopeptide repeats BF90_3000 SM00387 Histidine kinase-like ATPases BF90_3000 SM00388 His Kinase A (phosphoacceptor) domain BF90_3004 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_3004 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_3008 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_3028 SM01276 BF90_3028 BF90_303 SM01207 BF90_303 BF90_3035 SM00363 S4 RNA-binding domain BF90_3038 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF90_3039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_3049 SM00382 ATPases associated with a variety of cellular activities BF90_3053 SM00448 cheY-homologous receiver domain BF90_3053 SM00862 Transcriptional regulatory protein, C terminal BF90_3055 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_3055 SM00357 Cold shock protein domain BF90_3055 SM00955 BF90_3055 BF90_308 SM00849 Metallo-beta-lactamase superfamily BF90_3084 SM01192 BF90_3084 BF90_3084 SM01193 BF90_3084 BF90_3088 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF90_3108 SM00028 Tetratricopeptide repeats BF90_311 SM00487 DEAD-like helicases superfamily BF90_311 SM00490 helicase superfamily c-terminal domain BF90_3116 SM00487 DEAD-like helicases superfamily BF90_3116 SM00490 helicase superfamily c-terminal domain BF90_3120 SM00422 helix_turn_helix, mercury resistance BF90_3123 SM00530 Helix-turn-helix XRE-family like proteins BF90_3127 SM00422 helix_turn_helix, mercury resistance BF90_3129 SM00382 ATPases associated with a variety of cellular activities BF90_3131 SM00382 ATPases associated with a variety of cellular activities BF90_3133 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF90_3133 SM00245 tail specific protease BF90_3135 SM00382 ATPases associated with a variety of cellular activities BF90_3137 SM00937 BF90_3137 BF90_3138 SM00957 SecA DEAD-like domain BF90_3138 SM00958 SecA preprotein cross-linking domain BF90_3140 SM00357 Cold shock protein domain BF90_3142 SM00487 DEAD-like helicases superfamily BF90_3142 SM00490 helicase superfamily c-terminal domain BF90_3149 SM00984 UDP binding domain BF90_3152 SM00382 ATPases associated with a variety of cellular activities BF90_3153 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF90_316 SM00382 ATPases associated with a variety of cellular activities BF90_3183 SM00287 Bacterial SH3 domain homologues BF90_3184 SM00287 Bacterial SH3 domain homologues BF90_3190 SM00287 Bacterial SH3 domain homologues BF90_3196 SM00487 DEAD-like helicases superfamily BF90_3196 SM00490 helicase superfamily c-terminal domain BF90_3205 SM00382 ATPases associated with a variety of cellular activities BF90_3207 SM00530 Helix-turn-helix XRE-family like proteins BF90_321 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_3212 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_3212 SM00387 Histidine kinase-like ATPases BF90_3212 SM00388 His Kinase A (phosphoacceptor) domain BF90_3213 SM00448 cheY-homologous receiver domain BF90_3213 SM00862 Transcriptional regulatory protein, C terminal BF90_3218 SM00287 Bacterial SH3 domain homologues BF90_3218 SM00382 ATPases associated with a variety of cellular activities BF90_322 SM00855 Phosphoglycerate mutase family BF90_3220 SM00984 UDP binding domain BF90_3232 SM00382 ATPases associated with a variety of cellular activities BF90_3233 SM00850 LytTr DNA-binding domain BF90_3250 SM00052 Putative diguanylate phosphodiesterase BF90_3250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF90_3250 SM00091 PAS domain BF90_3250 SM00267 diguanylate cyclase BF90_3254 SM00382 ATPases associated with a variety of cellular activities BF90_3267 SM00226 Low molecular weight phosphatase family BF90_3270 SM00903 Flavin reductase like domain BF90_3277 SM00937 BF90_3277 BF90_3280 SM00357 Cold shock protein domain BF90_3280 SM00382 ATPases associated with a variety of cellular activities BF90_3280 SM00959 Rho termination factor, N-terminal domain BF90_3284 SM00448 cheY-homologous receiver domain BF90_3294 SM00155 Phospholipase D. Active site motifs. BF90_3296 SM00052 Putative diguanylate phosphodiesterase BF90_3296 SM00267 diguanylate cyclase BF90_3299 SM00530 Helix-turn-helix XRE-family like proteins BF90_3300 SM00421 helix_turn_helix, Lux Regulon BF90_3300 SM00448 cheY-homologous receiver domain BF90_3301 SM00387 Histidine kinase-like ATPases BF90_3303 SM00382 ATPases associated with a variety of cellular activities BF90_3312 SM00836 DALR anticodon binding domain BF90_3312 SM01016 Arginyl tRNA synthetase N terminal dom BF90_3320 SM00422 helix_turn_helix, mercury resistance BF90_3326 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_3328 SM00382 ATPases associated with a variety of cellular activities BF90_3337 SM00936 Penicillin-binding protein 5, C-terminal domain BF90_3346 SM00986 Uracil DNA glycosylase superfamily BF90_3346 SM00987 UreE urease accessory protein, C-terminal domain BF90_3348 SM00382 ATPases associated with a variety of cellular activities BF90_3350 SM00354 helix_turn _helix lactose operon repressor BF90_3357 SM00100 Cyclic nucleotide-monophosphate binding domain BF90_3359 SM00421 helix_turn_helix, Lux Regulon BF90_3359 SM00448 cheY-homologous receiver domain BF90_3361 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF90_3363 SM00267 diguanylate cyclase BF90_3366 SM00448 cheY-homologous receiver domain BF90_3366 SM00850 LytTr DNA-binding domain BF90_3372 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_3377 SM00382 ATPases associated with a variety of cellular activities BF90_338 SM00354 helix_turn _helix lactose operon repressor BF90_3389 SM00448 cheY-homologous receiver domain BF90_3389 SM00850 LytTr DNA-binding domain BF90_3390 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF90_3390 SM00387 Histidine kinase-like ATPases BF90_3402 SM00487 DEAD-like helicases superfamily BF90_3402 SM00490 helicase superfamily c-terminal domain BF90_3404 SM01240 BF90_3404 BF90_3410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF90_3411 SM00849 Metallo-beta-lactamase superfamily BF90_3414 SM00091 PAS domain BF90_3414 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_3414 SM00387 Histidine kinase-like ATPases BF90_3414 SM00388 His Kinase A (phosphoacceptor) domain BF90_3415 SM00448 cheY-homologous receiver domain BF90_3415 SM00862 Transcriptional regulatory protein, C terminal BF90_3420 SM00788 Adenylosuccinate synthetase BF90_3423 SM00267 diguanylate cyclase BF90_3432 SM00470 ParB-like nuclease domain BF90_3434 SM00470 ParB-like nuclease domain BF90_3436 SM01228 BF90_3436 BF90_3438 SM00393 Putative single-stranded nucleic acids-binding domain BF90_3438 SM01245 BF90_3438 BF90_3442 SM00382 ATPases associated with a variety of cellular activities BF90_3442 SM00760 Bacterial dnaA protein helix-turn-helix domain BF90_3443 SM00480 DNA polymerase III beta subunit BF90_3446 SM00387 Histidine kinase-like ATPases BF90_3446 SM00433 TopoisomeraseII BF90_3447 SM00434 DNA Topoisomerase IV BF90_3455 SM00116 Domain in cystathionine beta-synthase and other proteins. BF90_3455 SM01240 BF90_3455 BF90_3456 SM00936 Penicillin-binding protein 5, C-terminal domain BF90_3466 SM00382 ATPases associated with a variety of cellular activities BF90_3468 SM00493 BF90_3468 BF90_3484 SM00966 SpoVT / AbrB like domain BF90_3487 SM00493 BF90_3487 BF90_3488 SM00650 Ribosomal RNA adenine dimethylases BF90_3497 SM01400 BF90_3497 BF90_3500 SM00487 DEAD-like helicases superfamily BF90_3500 SM00490 helicase superfamily c-terminal domain BF90_3500 SM00982 BF90_3500 BF90_3500 SM01058 CarD-like/TRCF domain BF90_3501 SM00966 SpoVT / AbrB like domain BF90_3504 SM00363 S4 RNA-binding domain BF90_3508 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_3511 SM00331 Sigma factor PP2C-like phosphatases BF90_3511 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF90_3512 SM00977 TilS substrate C-terminal domain BF90_3514 SM00382 ATPases associated with a variety of cellular activities BF90_3522 SM00905 Dihydroneopterin aldolase BF90_3524 SM00530 Helix-turn-helix XRE-family like proteins BF90_3534 SM00382 ATPases associated with a variety of cellular activities BF90_3534 SM01086 C-terminal, D2-small domain, of ClpB protein BF90_3535 SM00382 ATPases associated with a variety of cellular activities BF90_3537 SM00670 Large family of predicted nucleotide-binding domains BF90_354 SM00530 Helix-turn-helix XRE-family like proteins BF90_3542 SM00840 BF90_3542 BF90_3543 SM00535 Ribonuclease III family BF90_3544 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF90_3546 SM00421 helix_turn_helix, Lux Regulon BF90_3548 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF90_3549 SM00649 Ribosomal protein L11/L12 BF90_3555 SM00663 RNA polymerase I subunit A N-terminus BF90_3559 SM00838 Elongation factor G C-terminus BF90_3559 SM00889 Elongation factor G, domain IV BF90_3561 SM01403 BF90_3561 BF90_3565 SM01382 BF90_3565 BF90_3565 SM01383 BF90_3565 BF90_3568 SM00322 K homology RNA-binding domain BF90_3572 SM01374 BF90_3572 BF90_3573 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF90_3585 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_3589 SM00662 RNA polymerases D BF90_359 SM00646 BF90_359 BF90_3591 SM00382 ATPases associated with a variety of cellular activities BF90_3592 SM00382 ATPases associated with a variety of cellular activities BF90_3598 SM00646 BF90_3598 BF90_36 SM00327 von Willebrand factor (vWF) type A domain BF90_3601 SM01251 BF90_3601 BF90_3625 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_3625 SM00895 BF90_3625 BF90_3628 SM01350 BF90_3628 BF90_363 SM00382 ATPases associated with a variety of cellular activities BF90_3638 SM00382 ATPases associated with a variety of cellular activities BF90_3638 SM00930 BF90_3638 BF90_3640 SM00829 Enoylreductase BF90_365 SM00052 Putative diguanylate phosphodiesterase BF90_365 SM00091 PAS domain BF90_365 SM00267 diguanylate cyclase BF90_3651 SM00382 ATPases associated with a variety of cellular activities BF90_3652 SM00382 ATPases associated with a variety of cellular activities BF90_3655 SM00342 helix_turn_helix, arabinose operon control protein BF90_367 SM00860 SMI1 / KNR4 family BF90_3673 SM00563 Phosphate acyltransferases BF90_3675 SM00354 helix_turn _helix lactose operon repressor BF90_3685 SM00382 ATPases associated with a variety of cellular activities BF90_3691 SM00382 ATPases associated with a variety of cellular activities BF90_3692 SM00382 ATPases associated with a variety of cellular activities BF90_370 SM00450 Rhodanese Homology Domain BF90_370 SM00849 Metallo-beta-lactamase superfamily BF90_3706 SM00487 DEAD-like helicases superfamily BF90_3706 SM00490 helicase superfamily c-terminal domain BF90_3711 SM01005 Alanine racemase, C-terminal domain BF90_3714 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_3714 SM00732 Likely ribonuclease with RNase H fold. BF90_3715 SM00731 SprT homologues. BF90_373 SM00382 ATPases associated with a variety of cellular activities BF90_3737 SM00382 ATPases associated with a variety of cellular activities BF90_3738 SM00881 CoA binding domain BF90_3741 SM00883 Chaperonin 10 Kd subunit BF90_3745 SM00448 cheY-homologous receiver domain BF90_3745 SM00862 Transcriptional regulatory protein, C terminal BF90_3746 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_3746 SM00387 Histidine kinase-like ATPases BF90_3746 SM00388 His Kinase A (phosphoacceptor) domain BF90_3753 SM00382 ATPases associated with a variety of cellular activities BF90_3754 SM00387 Histidine kinase-like ATPases BF90_3754 SM00388 His Kinase A (phosphoacceptor) domain BF90_3755 SM00448 cheY-homologous receiver domain BF90_3755 SM00862 Transcriptional regulatory protein, C terminal BF90_3760 SM01001 AIR carboxylase BF90_3762 SM00998 Adenylosuccinate lyase C-terminus BF90_3765 SM01211 BF90_3765 BF90_3770 SM00798 AICARFT/IMPCHase bienzyme BF90_3770 SM00851 MGS-like domain BF90_3771 SM01209 BF90_3771 BF90_3771 SM01210 BF90_3771 BF90_3773 SM00244 prohibitin homologues BF90_3777 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF90_3777 SM00292 breast cancer carboxy-terminal domain BF90_3777 SM00532 Ligase N family BF90_3783 SM00382 ATPases associated with a variety of cellular activities BF90_3783 SM00930 BF90_3783 BF90_379 SM00878 Biotin carboxylase C-terminal domain BF90_3790 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_3794 SM00845 GatB domain BF90_3795 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF90_3798 SM00382 ATPases associated with a variety of cellular activities BF90_3811 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF90_3820 SM01007 Class II Aldolase and Adducin N-terminal domain BF90_3841 SM00062 Bacterial periplasmic substrate-binding proteins BF90_3841 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF90_3842 SM00382 ATPases associated with a variety of cellular activities BF90_3843 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_3843 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_3844 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_3844 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_3845 SM00642 Alpha-amylase domain BF90_3849 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF90_3849 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF90_3849 SM00493 BF90_3849 BF90_3853 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_3853 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_3857 SM00382 ATPases associated with a variety of cellular activities BF90_3858 SM00382 ATPases associated with a variety of cellular activities BF90_3859 SM00060 Fibronectin type 3 domain BF90_3859 SM00636 BF90_3859 BF90_3859 SM00637 BF90_3859 BF90_3866 SM00530 Helix-turn-helix XRE-family like proteins BF90_3871 SM00946 Prolyl-tRNA synthetase, C-terminal BF90_3880 SM00831 Cation transporter/ATPase, N-terminus BF90_3882 SM00226 Low molecular weight phosphatase family BF90_39 SM00382 ATPases associated with a variety of cellular activities BF90_3901 SM00478 endonuclease III BF90_3907 SM00530 Helix-turn-helix XRE-family like proteins BF90_391 SM00387 Histidine kinase-like ATPases BF90_391 SM00388 His Kinase A (phosphoacceptor) domain BF90_3914 SM00382 ATPases associated with a variety of cellular activities BF90_392 SM00448 cheY-homologous receiver domain BF90_392 SM00862 Transcriptional regulatory protein, C terminal BF90_3964 SM00382 ATPases associated with a variety of cellular activities BF90_3968 SM00530 Helix-turn-helix XRE-family like proteins BF90_3979 SM00984 UDP binding domain BF90_3995 SM00478 endonuclease III BF90_3995 SM00525 BF90_3995 BF90_4000 SM00382 ATPases associated with a variety of cellular activities BF90_4004 SM00382 ATPases associated with a variety of cellular activities BF90_4037 SM00567 E-Z type HEAT repeats BF90_404 SM00382 ATPases associated with a variety of cellular activities BF90_4040 SM00052 Putative diguanylate phosphodiesterase BF90_4040 SM00091 PAS domain BF90_4040 SM00267 diguanylate cyclase BF90_4042 SM00763 PrkA AAA domain BF90_4044 SM00364 Leucine-rich repeats, bacterial type BF90_4044 SM00365 Leucine-rich repeat, SDS22-like subfamily BF90_4044 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF90_4044 SM00725 NEAr Transporter domain BF90_4047 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF90_4049 SM00244 prohibitin homologues BF90_4050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_4050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4051 SM00091 PAS domain BF90_4051 SM00387 Histidine kinase-like ATPases BF90_4052 SM00448 cheY-homologous receiver domain BF90_4056 SM00248 ankyrin repeats BF90_4058 SM00382 ATPases associated with a variety of cellular activities BF90_4063 SM00448 cheY-homologous receiver domain BF90_4063 SM00862 Transcriptional regulatory protein, C terminal BF90_4064 SM00387 Histidine kinase-like ATPases BF90_4064 SM00388 His Kinase A (phosphoacceptor) domain BF90_4067 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_4067 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4068 SM00387 Histidine kinase-like ATPases BF90_4069 SM00448 cheY-homologous receiver domain BF90_4071 SM00919 Malic enzyme, NAD binding domain BF90_4071 SM01274 BF90_4071 BF90_4074 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_4076 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4076 SM00387 Histidine kinase-like ATPases BF90_4076 SM00388 His Kinase A (phosphoacceptor) domain BF90_4077 SM00448 cheY-homologous receiver domain BF90_4077 SM00862 Transcriptional regulatory protein, C terminal BF90_408 SM00422 helix_turn_helix, mercury resistance BF90_408 SM00871 Bacterial transcription activator, effector binding domain BF90_4081 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF90_4081 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF90_4085 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF90_4085 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF90_4087 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_4090 SM00028 Tetratricopeptide repeats BF90_4090 SM00530 Helix-turn-helix XRE-family like proteins BF90_41 SM00028 Tetratricopeptide repeats BF90_4103 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_4109 SM00382 ATPases associated with a variety of cellular activities BF90_4114 SM00327 von Willebrand factor (vWF) type A domain BF90_4115 SM00382 ATPases associated with a variety of cellular activities BF90_4116 SM00155 Phospholipase D. Active site motifs. BF90_4119 SM00052 Putative diguanylate phosphodiesterase BF90_4119 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF90_4119 SM00091 PAS domain BF90_4119 SM00267 diguanylate cyclase BF90_4121 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_4121 SM00866 BF90_4121 BF90_4123 SM00642 Alpha-amylase domain BF90_4130 SM00382 ATPases associated with a variety of cellular activities BF90_4131 SM00062 Bacterial periplasmic substrate-binding proteins BF90_4131 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF90_414 SM00342 helix_turn_helix, arabinose operon control protein BF90_4141 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4141 SM00387 Histidine kinase-like ATPases BF90_4141 SM00388 His Kinase A (phosphoacceptor) domain BF90_4142 SM00448 cheY-homologous receiver domain BF90_4142 SM00862 Transcriptional regulatory protein, C terminal BF90_4150 SM00382 ATPases associated with a variety of cellular activities BF90_4151 SM00382 ATPases associated with a variety of cellular activities BF90_4153 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_4156 SM00354 helix_turn _helix lactose operon repressor BF90_4159 SM00382 ATPases associated with a variety of cellular activities BF90_4166 SM00829 Enoylreductase BF90_4168 SM00770 Zinc dependent phospholipase C (alpha toxin) BF90_417 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_4175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_4177 SM00530 Helix-turn-helix XRE-family like proteins BF90_4186 SM00530 Helix-turn-helix XRE-family like proteins BF90_4204 SM00899 BF90_4204 BF90_4234 SM00116 Domain in cystathionine beta-synthase and other proteins. BF90_4237 SM00287 Bacterial SH3 domain homologues BF90_4239 SM00382 ATPases associated with a variety of cellular activities BF90_4256 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_4264 SM00640 Glycosyl hydrolases family 32 BF90_4266 SM00354 helix_turn _helix lactose operon repressor BF90_4279 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_428 SM00448 cheY-homologous receiver domain BF90_428 SM00862 Transcriptional regulatory protein, C terminal BF90_4282 SM00450 Rhodanese Homology Domain BF90_4284 SM00450 Rhodanese Homology Domain BF90_4285 SM00450 Rhodanese Homology Domain BF90_4285 SM00849 Metallo-beta-lactamase superfamily BF90_4289 SM00450 Rhodanese Homology Domain BF90_4294 SM00829 Enoylreductase BF90_430 SM00387 Histidine kinase-like ATPases BF90_4304 SM00287 Bacterial SH3 domain homologues BF90_4306 SM00382 ATPases associated with a variety of cellular activities BF90_4317 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF90_432 SM00382 ATPases associated with a variety of cellular activities BF90_4337 SM00344 helix_turn_helix ASNC type BF90_435 SM00382 ATPases associated with a variety of cellular activities BF90_4350 SM01060 BF90_4350 BF90_4356 SM00382 ATPases associated with a variety of cellular activities BF90_4358 SM00382 ATPases associated with a variety of cellular activities BF90_4359 SM00062 Bacterial periplasmic substrate-binding proteins BF90_4359 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF90_4361 SM00382 ATPases associated with a variety of cellular activities BF90_4376 SM00644 BF90_4376 BF90_4378 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_4385 SM00957 SecA DEAD-like domain BF90_4385 SM00958 SecA preprotein cross-linking domain BF90_4388 SM00635 Bacterial Ig-like domain 2 BF90_4399 SM00646 BF90_4399 BF90_4413 SM00382 ATPases associated with a variety of cellular activities BF90_4417 SM00860 SMI1 / KNR4 family BF90_4418 SM00860 SMI1 / KNR4 family BF90_442 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_4420 SM00091 PAS domain BF90_4420 SM00387 Histidine kinase-like ATPases BF90_4421 SM00448 cheY-homologous receiver domain BF90_4427 SM00422 helix_turn_helix, mercury resistance BF90_443 SM01209 BF90_443 BF90_4453 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_4460 SM01120 BF90_4460 BF90_4467 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_4472 SM00460 Transglutaminase/protease-like homologues BF90_4485 SM00331 Sigma factor PP2C-like phosphatases BF90_4485 SM00448 cheY-homologous receiver domain BF90_4486 SM00138 Methyltransferase, chemotaxis proteins BF90_4487 SM00387 Histidine kinase-like ATPases BF90_4487 SM00388 His Kinase A (phosphoacceptor) domain BF90_4487 SM00448 cheY-homologous receiver domain BF90_4494 SM00829 Enoylreductase BF90_4502 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_4507 SM00028 Tetratricopeptide repeats BF90_4512 SM00530 Helix-turn-helix XRE-family like proteins BF90_4523 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_4532 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_4535 SM00382 ATPases associated with a variety of cellular activities BF90_4550 SM00422 helix_turn_helix, mercury resistance BF90_4571 SM00354 helix_turn _helix lactose operon repressor BF90_4573 SM00849 Metallo-beta-lactamase superfamily BF90_4578 SM00725 NEAr Transporter domain BF90_4590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF90_4593 SM00342 helix_turn_helix, arabinose operon control protein BF90_4593 SM00871 Bacterial transcription activator, effector binding domain BF90_4596 SM00387 Histidine kinase-like ATPases BF90_4596 SM00388 His Kinase A (phosphoacceptor) domain BF90_4597 SM00448 cheY-homologous receiver domain BF90_4597 SM00862 Transcriptional regulatory protein, C terminal BF90_4603 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_4603 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4611 SM00357 Cold shock protein domain BF90_4634 SM01060 BF90_4634 BF90_4636 SM00642 Alpha-amylase domain BF90_4640 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_4649 SM00382 ATPases associated with a variety of cellular activities BF90_4649 SM01086 C-terminal, D2-small domain, of ClpB protein BF90_4655 SM00825 Beta-ketoacyl synthase BF90_4663 SM00382 ATPases associated with a variety of cellular activities BF90_4664 SM00382 ATPases associated with a variety of cellular activities BF90_4671 SM00155 Phospholipase D. Active site motifs. BF90_4677 SM01118 BF90_4677 BF90_4679 SM00954 Region found in RelA / SpoT proteins BF90_469 SM00091 PAS domain BF90_469 SM00387 Histidine kinase-like ATPases BF90_469 SM00388 His Kinase A (phosphoacceptor) domain BF90_4712 SM00635 Bacterial Ig-like domain 2 BF90_4734 SM00861 Transketolase, pyrimidine binding domain BF90_4735 SM00530 Helix-turn-helix XRE-family like proteins BF90_474 SM00382 ATPases associated with a variety of cellular activities BF90_4753 SM00530 Helix-turn-helix XRE-family like proteins BF90_4756 SM00382 ATPases associated with a variety of cellular activities BF90_4760 SM00014 Acid phosphatase homologues BF90_477 SM00387 Histidine kinase-like ATPases BF90_477 SM00388 His Kinase A (phosphoacceptor) domain BF90_4770 SM00448 cheY-homologous receiver domain BF90_4770 SM00862 Transcriptional regulatory protein, C terminal BF90_4771 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4771 SM00387 Histidine kinase-like ATPases BF90_4771 SM00388 His Kinase A (phosphoacceptor) domain BF90_4772 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_4772 SM00895 BF90_4772 BF90_4787 SM00822 BF90_4787 BF90_48 SM00857 Resolvase, N terminal domain BF90_480 SM00829 Enoylreductase BF90_4803 SM00420 helix_turn_helix, Deoxyribose operon repressor BF90_4803 SM01134 BF90_4803 BF90_4807 SM00365 Leucine-rich repeat, SDS22-like subfamily BF90_4807 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF90_481 SM00740 BF90_481 BF90_4813 SM00387 Histidine kinase-like ATPases BF90_4813 SM00388 His Kinase A (phosphoacceptor) domain BF90_4814 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_4818 SM00387 Histidine kinase-like ATPases BF90_4818 SM00388 His Kinase A (phosphoacceptor) domain BF90_4831 SM00465 GIY-YIG type nucleases (URI domain) BF90_4831 SM00496 Intron-encoded nuclease repeat 2 BF90_4834 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_4835 SM00382 ATPases associated with a variety of cellular activities BF90_4837 SM00382 ATPases associated with a variety of cellular activities BF90_4841 SM00344 helix_turn_helix ASNC type BF90_4865 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_4879 SM00917 LeuA allosteric (dimerisation) domain BF90_4880 SM01329 BF90_4880 BF90_4916 SM00387 Histidine kinase-like ATPases BF90_4917 SM00421 helix_turn_helix, Lux Regulon BF90_4917 SM00448 cheY-homologous receiver domain BF90_4935 SM00091 PAS domain BF90_4935 SM00388 His Kinase A (phosphoacceptor) domain BF90_4939 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4939 SM00387 Histidine kinase-like ATPases BF90_4939 SM00388 His Kinase A (phosphoacceptor) domain BF90_494 SM00422 helix_turn_helix, mercury resistance BF90_4950 SM00363 S4 RNA-binding domain BF90_4954 SM00448 cheY-homologous receiver domain BF90_4954 SM00862 Transcriptional regulatory protein, C terminal BF90_4955 SM00091 PAS domain BF90_4955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_4955 SM00387 Histidine kinase-like ATPases BF90_4955 SM00388 His Kinase A (phosphoacceptor) domain BF90_4957 SM00257 Lysin motif BF90_4962 SM00487 DEAD-like helicases superfamily BF90_4962 SM00490 helicase superfamily c-terminal domain BF90_4964 SM00257 Lysin motif BF90_4966 SM00422 helix_turn_helix, mercury resistance BF90_4968 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF90_4971 SM00644 BF90_4971 BF90_4973 SM00870 BF90_4973 BF90_4976 SM00316 Ribosomal protein S1-like RNA-binding domain BF90_4977 SM01240 BF90_4977 BF90_4988 SM00411 bacterial (prokaryotic) histone like domain BF90_4993 SM00562 BF90_4993 BF90_4997 SM00028 Tetratricopeptide repeats BF90_4998 SM00914 BF90_4998 BF90_5007 SM00986 Uracil DNA glycosylase superfamily BF90_5007 SM00987 UreE urease accessory protein, C-terminal domain BF90_5011 SM00851 MGS-like domain BF90_5020 SM00479 BF90_5020 BF90_5021 SM00491 BF90_5021 BF90_5026 SM00478 endonuclease III BF90_5026 SM00525 BF90_5026 BF90_5028 SM00060 Fibronectin type 3 domain BF90_503 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_5039 SM00981 BF90_5039 BF90_5041 SM00491 BF90_5041 BF90_5054 SM00450 Rhodanese Homology Domain BF90_5060 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF90_5060 SM00475 5'-3' exonuclease BF90_5084 SM00357 Cold shock protein domain BF90_5094 SM00849 Metallo-beta-lactamase superfamily BF90_5095 SM00422 helix_turn_helix, mercury resistance BF90_5095 SM00871 Bacterial transcription activator, effector binding domain BF90_5113 SM00448 cheY-homologous receiver domain BF90_5114 SM00073 Histidine Phosphotransfer domain BF90_5115 SM00260 Two component signalling adaptor domain BF90_5115 SM00387 Histidine kinase-like ATPases BF90_5115 SM01231 BF90_5115 BF90_5119 SM00138 Methyltransferase, chemotaxis proteins BF90_5137 SM00382 ATPases associated with a variety of cellular activities BF90_5146 SM00260 Two component signalling adaptor domain BF90_5146 SM00448 cheY-homologous receiver domain BF90_515 SM00480 DNA polymerase III beta subunit BF90_5152 SM00028 Tetratricopeptide repeats BF90_5155 SM00028 Tetratricopeptide repeats BF90_5171 SM00382 ATPases associated with a variety of cellular activities BF90_5171 SM00962 SRP54-type protein, GTPase domain BF90_5173 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF90_5184 SM00530 Helix-turn-helix XRE-family like proteins BF90_5189 SM00382 ATPases associated with a variety of cellular activities BF90_5192 SM00849 Metallo-beta-lactamase superfamily BF90_5192 SM01027 Beta-Casp domain BF90_5196 SM00835 Cupin BF90_5199 SM00855 Phosphoglycerate mutase family BF90_5212 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_5212 SM00895 BF90_5212 BF90_5214 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF90_5232 SM00530 Helix-turn-helix XRE-family like proteins BF90_5241 SM00421 helix_turn_helix, Lux Regulon BF90_5241 SM00448 cheY-homologous receiver domain BF90_5243 SM00382 ATPases associated with a variety of cellular activities BF90_5246 SM00155 Phospholipase D. Active site motifs. BF90_5250 SM00919 Malic enzyme, NAD binding domain BF90_5250 SM01274 BF90_5250 BF90_5251 SM00387 Histidine kinase-like ATPases BF90_5252 SM00448 cheY-homologous receiver domain BF90_5254 SM00487 DEAD-like helicases superfamily BF90_5254 SM00490 helicase superfamily c-terminal domain BF90_5267 SM00646 BF90_5267 BF90_5268 SM00047 Lysozyme subfamily 2 BF90_5304 SM00854 Bacterial capsule synthesis protein PGA_cap BF90_5305 SM00854 Bacterial capsule synthesis protein PGA_cap BF90_5312 SM00850 LytTr DNA-binding domain BF90_5323 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_5325 SM00448 cheY-homologous receiver domain BF90_5325 SM00862 Transcriptional regulatory protein, C terminal BF90_5326 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_5326 SM00387 Histidine kinase-like ATPases BF90_5326 SM00388 His Kinase A (phosphoacceptor) domain BF90_5329 SM00450 Rhodanese Homology Domain BF90_5340 SM01133 BF90_5340 BF90_5342 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF90_5348 SM01011 Aminopeptidase P, N-terminal domain BF90_5350 SM00287 Bacterial SH3 domain homologues BF90_5352 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF90_5352 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF90_5352 SM00493 BF90_5352 BF90_537 SM00465 GIY-YIG type nucleases (URI domain) BF90_5372 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF90_5379 SM00382 ATPases associated with a variety of cellular activities BF90_5380 SM00382 ATPases associated with a variety of cellular activities BF90_5387 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_5391 SM00382 ATPases associated with a variety of cellular activities BF90_5392 SM00382 ATPases associated with a variety of cellular activities BF90_5398 SM00287 Bacterial SH3 domain homologues BF90_5401 SM00382 ATPases associated with a variety of cellular activities BF90_5402 SM00448 cheY-homologous receiver domain BF90_5402 SM00862 Transcriptional regulatory protein, C terminal BF90_5404 SM00387 Histidine kinase-like ATPases BF90_5404 SM00388 His Kinase A (phosphoacceptor) domain BF90_5419 SM00448 cheY-homologous receiver domain BF90_5419 SM00862 Transcriptional regulatory protein, C terminal BF90_5420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_5420 SM00387 Histidine kinase-like ATPases BF90_5420 SM00388 His Kinase A (phosphoacceptor) domain BF90_5438 SM00460 Transglutaminase/protease-like homologues BF90_5443 SM00966 SpoVT / AbrB like domain BF90_5445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_5453 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF90_5453 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_5465 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF90_5485 SM00855 Phosphoglycerate mutase family BF90_5495 SM00155 Phospholipase D. Active site motifs. BF90_5500 SM01091 Transporter associated domain BF90_5516 SM00244 prohibitin homologues BF90_5517 SM00855 Phosphoglycerate mutase family BF90_5520 SM01005 Alanine racemase, C-terminal domain BF90_5526 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_5549 SM00487 DEAD-like helicases superfamily BF90_5549 SM00490 helicase superfamily c-terminal domain BF90_5553 SM00829 Enoylreductase BF90_5557 SM00849 Metallo-beta-lactamase superfamily BF90_5560 SM00460 Transglutaminase/protease-like homologues BF90_5565 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF90_5569 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_5570 SM00382 ATPases associated with a variety of cellular activities BF90_5572 SM00100 Cyclic nucleotide-monophosphate binding domain BF90_5572 SM00419 helix_turn_helix, cAMP Regulatory protein BF90_5573 SM00729 Elongator protein 3, MiaB family, Radical SAM BF90_5576 SM00852 Probable molybdopterin binding domain BF90_558 SM00642 Alpha-amylase domain BF90_5594 SM00487 DEAD-like helicases superfamily BF90_5595 SM00507 HNH nucleases BF90_5610 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF90_5610 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF90_5610 SM00493 BF90_5610 BF90_5612 SM00318 Staphylococcal nuclease homologues BF90_5616 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_5619 SM00028 Tetratricopeptide repeats BF90_562 SM00871 Bacterial transcription activator, effector binding domain BF90_5625 SM00954 Region found in RelA / SpoT proteins BF90_5633 SM00860 SMI1 / KNR4 family BF90_5653 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_5654 SM00758 BF90_5654 BF90_5659 SM00857 Resolvase, N terminal domain BF90_566 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_5667 SM01207 BF90_5667 BF90_5688 SM00984 UDP binding domain BF90_5693 SM00014 Acid phosphatase homologues BF90_5698 SM00725 NEAr Transporter domain BF90_5746 SM00864 Tubulin/FtsZ family, GTPase domain BF90_5749 SM00843 BF90_5749 BF90_5752 SM00530 Helix-turn-helix XRE-family like proteins BF90_5775 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain BF90_5810 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF90_5810 SM00493 BF90_5810 BF90_5811 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF90_5841 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_5845 SM00854 Bacterial capsule synthesis protein PGA_cap BF90_5852 SM00014 Acid phosphatase homologues BF90_5863 SM00646 BF90_5863 BF90_589 SM00382 ATPases associated with a variety of cellular activities BF90_59 SM00448 cheY-homologous receiver domain BF90_59 SM00862 Transcriptional regulatory protein, C terminal BF90_593 SM00420 helix_turn_helix, Deoxyribose operon repressor BF90_593 SM01134 BF90_593 BF90_60 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_60 SM00387 Histidine kinase-like ATPases BF90_60 SM00388 His Kinase A (phosphoacceptor) domain BF90_603 SM00861 Transketolase, pyrimidine binding domain BF90_613 SM00116 Domain in cystathionine beta-synthase and other proteins. BF90_613 SM00382 ATPases associated with a variety of cellular activities BF90_620 SM00060 Fibronectin type 3 domain BF90_620 SM00495 Chitin-binding domain type 3 BF90_629 SM00849 Metallo-beta-lactamase superfamily BF90_643 SM00341 Helicase and RNase D C-terminal BF90_643 SM00487 DEAD-like helicases superfamily BF90_643 SM00490 helicase superfamily c-terminal domain BF90_643 SM00956 BF90_643 BF90_651 SM01131 BF90_651 BF90_657 SM01130 BF90_657 BF90_661 SM00091 PAS domain BF90_661 SM00382 ATPases associated with a variety of cellular activities BF90_674 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF90_682 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF90_683 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF90_683 SM00387 Histidine kinase-like ATPases BF90_683 SM00388 His Kinase A (phosphoacceptor) domain BF90_684 SM00448 cheY-homologous receiver domain BF90_684 SM00862 Transcriptional regulatory protein, C terminal BF90_722 SM00382 ATPases associated with a variety of cellular activities BF90_724 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_737 SM00382 ATPases associated with a variety of cellular activities BF90_744 SM00028 Tetratricopeptide repeats BF90_76 SM00382 ATPases associated with a variety of cellular activities BF90_762 SM00382 ATPases associated with a variety of cellular activities BF90_772 SM00830 Chorismate mutase type II BF90_780 SM00287 Bacterial SH3 domain homologues BF90_791 SM00382 ATPases associated with a variety of cellular activities BF90_795 SM01133 BF90_795 BF90_801 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_805 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF90_808 SM00346 helix_turn_helix isocitrate lyase regulation BF90_812 SM00098 Alkaline phosphatase homologues BF90_814 SM00530 Helix-turn-helix XRE-family like proteins BF90_819 SM00850 LytTr DNA-binding domain BF90_839 SM01060 BF90_839 BF90_850 SM00347 helix_turn_helix multiple antibiotic resistance protein BF90_851 SM00889 Elongation factor G, domain IV BF90_856 SM00382 ATPases associated with a variety of cellular activities BF90_857 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_859 SM00382 ATPases associated with a variety of cellular activities BF90_864 SM00342 helix_turn_helix, arabinose operon control protein BF90_864 SM00871 Bacterial transcription activator, effector binding domain BF90_869 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF90_873 SM00387 Histidine kinase-like ATPases BF90_873 SM00388 His Kinase A (phosphoacceptor) domain BF90_874 SM00448 cheY-homologous receiver domain BF90_874 SM00862 Transcriptional regulatory protein, C terminal BF90_88 SM00563 Phosphate acyltransferases BF90_902 SM00797 Allophanate hydrolase subunit 2 BF90_903 SM00797 Allophanate hydrolase subunit 2 BF90_904 SM00796 Allophanate hydrolase subunit 1 BF90_905 SM00346 helix_turn_helix isocitrate lyase regulation BF90_909 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF90_922 SM00849 Metallo-beta-lactamase superfamily BF90_940 SM00870 BF90_940 BF90_941 SM00530 Helix-turn-helix XRE-family like proteins BF90_948 SM00919 Malic enzyme, NAD binding domain BF90_948 SM01274 BF90_948 BF90_954 SM00448 cheY-homologous receiver domain BF90_955 SM00387 Histidine kinase-like ATPases BF90_965 SM01060 BF90_965 BF90_990 SM00382 ATPases associated with a variety of cellular activities BF90_995 SM00226 Low molecular weight phosphatase family BF90_998 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor