locus-tag class description KM388_00005 PF00308 Bacterial dnaA protein KM388_00005 PF08299 Bacterial dnaA protein helix-turn-helix KM388_00005 PF11638 DnaA N-terminal domain KM388_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KM388_00010 PF02767 DNA polymerase III beta subunit, central domain KM388_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KM388_00020 PF02463 RecF/RecN/SMC N terminal domain KM388_00025 PF01751 Toprim domain KM388_00025 PF00204 DNA gyrase B KM388_00025 PF00986 DNA gyrase B subunit, carboxyl terminus KM388_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller KM388_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A KM388_00060 PF14175 YaaC-like Protein KM388_00065 PF00478 IMP dehydrogenase / GMP reductase domain KM388_00065 PF00571 CBS domain KM388_00070 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_00070 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_00075 PF01680 SOR/SNZ family KM388_00080 PF01174 SNO glutamine amidotransferase family KM388_00085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM388_00085 PF02403 Seryl-tRNA synthetase N-terminal domain KM388_00100 PF01712 Deoxynucleoside kinase KM388_00105 PF01712 Deoxynucleoside kinase KM388_00110 PF00857 Isochorismatase family KM388_00115 PF14437 MafB19-like deaminase KM388_00125 PF12169 DNA polymerase III subunits gamma and tau domain III KM388_00130 PF02575 YbaB/EbfC DNA-binding family KM388_00135 PF13662 Toprim domain KM388_00135 PF02132 RecR protein KM388_00140 PF10704 Protein of unknown function (DUF2508) KM388_00145 PF07441 SigmaK-factor processing regulatory protein BofA KM388_00180 PF01276 Orn/Lys/Arg decarboxylase, major domain KM388_00180 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KM388_00185 PF02223 Thymidylate kinase KM388_00190 PF09115 DNA polymerase III, delta subunit, C terminal KM388_00195 PF04468 PSP1 C-terminal conserved region KM388_00200 PF06156 Initiation control protein YabA KM388_00205 PF05175 Methyltransferase small domain KM388_00210 PF01541 GIY-YIG catalytic domain KM388_00215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM388_00220 PF18277 AbrB C-terminal domain KM388_00220 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KM388_00225 PF08264 Anticodon-binding domain of tRNA KM388_00225 PF09334 tRNA synthetases class I (M) KM388_00225 PF01588 Putative tRNA binding domain KM388_00230 PF01026 TatD related DNase KM388_00235 PF13662 Toprim domain KM388_00235 PF13331 Domain of unknown function (DUF4093) KM388_00240 PF00398 Ribosomal RNA adenine dimethylase KM388_00245 PF05582 YabG peptidase U57 KM388_00250 PF06257 Biofilm formation stimulator VEG KM388_00255 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM388_00260 PF00288 GHMP kinases N terminal domain KM388_00260 PF08544 GHMP kinases C terminal KM388_00265 PF09182 Bacterial purine repressor, N-terminal KM388_00265 PF00156 Phosphoribosyl transferase domain KM388_00270 PF01042 Endoribonuclease L-PSP KM388_00275 PF04026 SpoVG KM388_00280 PF00132 Bacterial transferase hexapeptide (six repeats) KM388_00280 PF00483 Nucleotidyl transferase KM388_00285 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KM388_00285 PF14572 Phosphoribosyl synthetase-associated domain KM388_00290 PF01195 Peptidyl-tRNA hydrolase KM388_00300 PF02559 CarD-like/TRCF domain KM388_00300 PF00271 Helicase conserved C-terminal domain KM388_00300 PF03461 TRCF domain KM388_00300 PF17757 UvrB interaction domain KM388_00300 PF00270 DEAD/DEAH box helicase KM388_00305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KM388_00305 PF15714 Stage V sporulation protein T C-terminal, transcription factor KM388_00310 PF01943 Polysaccharide biosynthesis protein KM388_00310 PF14667 Polysaccharide biosynthesis C-terminal domain KM388_00315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM388_00315 PF03819 MazG nucleotide pyrophosphohydrolase domain KM388_00320 PF01479 S4 domain KM388_00325 PF07873 YabP family KM388_00330 PF09578 Spore cortex protein YabQ (Spore_YabQ) KM388_00340 PF00575 S1 RNA binding domain KM388_00355 PF07228 Stage II sporulation protein E (SpoIIE) KM388_00360 PF11734 TilS substrate C-terminal domain KM388_00360 PF09179 TilS substrate binding domain KM388_00360 PF01171 PP-loop family KM388_00365 PF00156 Phosphoribosyl transferase domain KM388_00370 PF00004 ATPase family associated with various cellular activities (AAA) KM388_00370 PF06480 FtsH Extracellular KM388_00370 PF01434 Peptidase family M41 KM388_00370 PF17862 AAA+ lid domain KM388_00375 PF03309 Type III pantothenate kinase KM388_00380 PF01430 Hsp33 protein KM388_00385 PF00291 Pyridoxal-phosphate dependent enzyme KM388_00390 PF00425 chorismate binding enzyme KM388_00390 PF04715 Anthranilate synthase component I, N terminal region KM388_00395 PF00117 Glutamine amidotransferase class-I KM388_00400 PF01063 Amino-transferase class IV KM388_00405 PF00809 Pterin binding enzyme KM388_00410 PF02152 Dihydroneopterin aldolase KM388_00415 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KM388_00420 PF01381 Helix-turn-helix KM388_00425 PF01207 Dihydrouridine synthase (Dus) KM388_00430 PF01336 OB-fold nucleic acid binding domain KM388_00430 PF00152 tRNA synthetases class II (D, K and N) KM388_00450 PF17727 CtsR C-terminal dimerization domain KM388_00450 PF05848 CtsR N-terminal HTH domain KM388_00455 PF02151 UvrB/uvrC motif KM388_00460 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain KM388_00465 PF07724 AAA domain (Cdc48 subfamily) KM388_00465 PF17871 AAA lid domain KM388_00465 PF02861 Clp amino terminal domain, pathogenicity island component KM388_00465 PF10431 C-terminal, D2-small domain, of ClpB protein KM388_00465 PF00004 ATPase family associated with various cellular activities (AAA) KM388_00470 PF18073 Rubredoxin metal binding domain KM388_00475 PF10635 DisA bacterial checkpoint controller linker region KM388_00475 PF02457 DisA bacterial checkpoint controller nucleotide-binding KM388_00485 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KM388_00490 PF02542 YgbB family KM388_00495 PF00749 tRNA synthetases class I (E and Q), catalytic domain KM388_00500 PF00132 Bacterial transferase hexapeptide (six repeats) KM388_00500 PF06426 Serine acetyltransferase, N-terminal KM388_00505 PF01406 tRNA synthetases class I (C) catalytic domain KM388_00505 PF09190 DALR domain KM388_00510 PF00636 Ribonuclease III domain KM388_00515 PF08032 RNA 2'-O ribose methyltransferase substrate binding KM388_00515 PF00588 SpoU rRNA Methylase family KM388_00520 PF05991 YacP-like NYN domain KM388_00525 PF04542 Sigma-70 region 2 KM388_00525 PF08281 Sigma-70, region 4 KM388_00530 PF00471 Ribosomal protein L33 KM388_00535 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KM388_00540 PF02357 Transcription termination factor nusG KM388_00540 PF00467 KOW motif KM388_00545 PF00298 Ribosomal protein L11, RNA binding domain KM388_00545 PF03946 Ribosomal protein L11, N-terminal domain KM388_00550 PF00687 Ribosomal protein L1p/L10e family KM388_00555 PF00466 Ribosomal protein L10 KM388_00560 PF16320 Ribosomal protein L7/L12 dimerisation domain KM388_00560 PF00542 Ribosomal protein L7/L12 C-terminal domain KM388_00565 PF05175 Methyltransferase small domain KM388_00570 PF04563 RNA polymerase beta subunit KM388_00570 PF04560 RNA polymerase Rpb2, domain 7 KM388_00570 PF00562 RNA polymerase Rpb2, domain 6 KM388_00570 PF10385 RNA polymerase beta subunit external 1 domain KM388_00570 PF04565 RNA polymerase Rpb2, domain 3 KM388_00570 PF04561 RNA polymerase Rpb2, domain 2 KM388_00575 PF04998 RNA polymerase Rpb1, domain 5 KM388_00575 PF05000 RNA polymerase Rpb1, domain 4 KM388_00575 PF04983 RNA polymerase Rpb1, domain 3 KM388_00575 PF00623 RNA polymerase Rpb1, domain 2 KM388_00575 PF04997 RNA polymerase Rpb1, domain 1 KM388_00580 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KM388_00585 PF00164 Ribosomal protein S12/S23 KM388_00590 PF00177 Ribosomal protein S7p/S5e KM388_00595 PF03144 Elongation factor Tu domain 2 KM388_00595 PF00009 Elongation factor Tu GTP binding domain KM388_00595 PF03764 Elongation factor G, domain IV KM388_00595 PF00679 Elongation factor G C-terminus KM388_00595 PF14492 Elongation Factor G, domain II KM388_00600 PF03143 Elongation factor Tu C-terminal domain KM388_00600 PF03144 Elongation factor Tu domain 2 KM388_00600 PF00009 Elongation factor Tu GTP binding domain KM388_00605 PF00338 Ribosomal protein S10p/S20e KM388_00610 PF00297 Ribosomal protein L3 KM388_00615 PF00573 Ribosomal protein L4/L1 family KM388_00620 PF00276 Ribosomal protein L23 KM388_00625 PF00181 Ribosomal Proteins L2, RNA binding domain KM388_00625 PF03947 Ribosomal Proteins L2, C-terminal domain KM388_00630 PF00203 Ribosomal protein S19 KM388_00635 PF00237 Ribosomal protein L22p/L17e KM388_00640 PF00189 Ribosomal protein S3, C-terminal domain KM388_00640 PF07650 KH domain KM388_00645 PF00252 Ribosomal protein L16p/L10e KM388_00650 PF00831 Ribosomal L29 protein KM388_00655 PF00366 Ribosomal protein S17 KM388_00660 PF00238 Ribosomal protein L14p/L23e KM388_00665 PF00467 KOW motif KM388_00665 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KM388_00670 PF00281 Ribosomal protein L5 KM388_00670 PF00673 ribosomal L5P family C-terminus KM388_00675 PF00253 Ribosomal protein S14p/S29e KM388_00680 PF00410 Ribosomal protein S8 KM388_00685 PF00347 Ribosomal protein L6 KM388_00690 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KM388_00695 PF03719 Ribosomal protein S5, C-terminal domain KM388_00695 PF00333 Ribosomal protein S5, N-terminal domain KM388_00700 PF00327 Ribosomal protein L30p/L7e KM388_00705 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KM388_00710 PF00344 SecY translocase KM388_00715 PF05191 Adenylate kinase, active site lid KM388_00720 PF00557 Metallopeptidase family M24 KM388_00725 PF01176 Translation initiation factor 1A / IF-1 KM388_00730 PF00444 Ribosomal protein L36 KM388_00735 PF00416 Ribosomal protein S13/S18 KM388_00740 PF00411 Ribosomal protein S11 KM388_00745 PF01000 RNA polymerase Rpb3/RpoA insert domain KM388_00745 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KM388_00745 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KM388_00750 PF01196 Ribosomal protein L17 KM388_00755 PF00005 ABC transporter KM388_00760 PF00005 ABC transporter KM388_00765 PF02361 Cobalt transport protein KM388_00770 PF01416 tRNA pseudouridine synthase KM388_00775 PF00572 Ribosomal protein L13 KM388_00780 PF00380 Ribosomal protein S9/S16 KM388_00790 PF01520 N-acetylmuramoyl-L-alanine amidase KM388_00795 PF10609 NUBPL iron-transfer P-loop NTPase KM388_00800 PF17898 Spore germination GerD central core domain KM388_00805 PF14089 KinB-signalling pathway activation in sporulation KM388_00810 PF01522 Polysaccharide deacetylase KM388_00885 PF00491 Arginase family KM388_00890 PF02457 DisA bacterial checkpoint controller nucleotide-binding KM388_00895 PF07949 YbbR-like protein KM388_00900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KM388_00900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KM388_00900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KM388_00900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KM388_00910 PF01380 SIS domain KM388_00915 PF00561 alpha/beta hydrolase fold KM388_00920 PF00392 Bacterial regulatory proteins, gntR family KM388_00920 PF07729 FCD domain KM388_00925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM388_00925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM388_00930 PF02447 GntP family permease KM388_00935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM388_00935 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KM388_00940 PF00326 Prolyl oligopeptidase family KM388_00940 PF07676 WD40-like Beta Propeller Repeat KM388_00975 PF00528 Binding-protein-dependent transport system inner membrane component KM388_00980 PF00005 ABC transporter KM388_00980 PF09383 NIL domain KM388_00985 PF03180 NLPA lipoprotein KM388_00990 PF08240 Alcohol dehydrogenase GroES-like domain KM388_00990 PF00107 Zinc-binding dehydrogenase KM388_01005 PF07690 Major Facilitator Superfamily KM388_01015 PF07690 Major Facilitator Superfamily KM388_01030 PF00528 Binding-protein-dependent transport system inner membrane component KM388_01035 PF12911 N-terminal TM domain of oligopeptide transport permease C KM388_01035 PF00528 Binding-protein-dependent transport system inner membrane component KM388_01040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_01040 PF00005 ABC transporter KM388_01045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_01045 PF00005 ABC transporter KM388_01050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_01060 PF12833 Helix-turn-helix domain KM388_01075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_01080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_01085 PF00248 Aldo/keto reductase family KM388_01090 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM388_01090 PF03807 NADP oxidoreductase coenzyme F420-dependent KM388_01095 PF04973 Nicotinamide mononucleotide transporter KM388_01100 PF06800 Sugar transport protein KM388_01105 PF00528 Binding-protein-dependent transport system inner membrane component KM388_01115 PF12727 PBP superfamily domain KM388_01115 PF12728 Helix-turn-helix domain KM388_01125 PF03466 LysR substrate binding domain KM388_01125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_01130 PF00892 EamA-like transporter family KM388_01135 PF14142 YrzO-like protein KM388_01145 PF01553 Acyltransferase KM388_01155 PF00356 Bacterial regulatory proteins, lacI family KM388_01155 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM388_01165 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_01165 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_01175 PF01026 TatD related DNase KM388_01180 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) KM388_01205 PF00005 ABC transporter KM388_01205 PF16326 ABC transporter C-terminal domain KM388_01205 PF12848 ABC transporter KM388_01220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_01225 PF00528 Binding-protein-dependent transport system inner membrane component KM388_01230 PF00528 Binding-protein-dependent transport system inner membrane component KM388_01230 PF12911 N-terminal TM domain of oligopeptide transport permease C KM388_01235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_01235 PF00005 ABC transporter KM388_01240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_01240 PF00005 ABC transporter KM388_01265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_01270 PF01557 Fumarylacetoacetate (FAA) hydrolase family KM388_01280 PF07690 Major Facilitator Superfamily KM388_01290 PF02875 Mur ligase family, glutamate ligase domain KM388_01290 PF01225 Mur ligase family, catalytic domain KM388_01290 PF08245 Mur ligase middle domain KM388_01295 PF00271 Helicase conserved C-terminal domain KM388_01295 PF00270 DEAD/DEAH box helicase KM388_01300 PF03851 UV-endonuclease UvdE KM388_01305 PF01694 Rhomboid family KM388_01310 PF01648 4'-phosphopantetheinyl transferase superfamily KM388_01320 PF01168 Alanine racemase, N-terminal domain KM388_01320 PF00842 Alanine racemase, C-terminal domain KM388_01325 PF01402 Ribbon-helix-helix protein, copG family KM388_01330 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system KM388_01335 PF17674 HHH domain KM388_01335 PF16921 Tex protein YqgF-like domain KM388_01335 PF09371 Tex-like protein N-terminal domain KM388_01335 PF00575 S1 RNA binding domain KM388_01345 PF17283 SprT-like zinc ribbon domain KM388_01345 PF10263 SprT-like family KM388_01430 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KM388_01435 PF00814 Glycoprotease family KM388_01440 PF00583 Acetyltransferase (GNAT) family KM388_01445 PF00814 Glycoprotease family KM388_01450 PF12848 ABC transporter KM388_01450 PF00005 ABC transporter KM388_01450 PF16326 ABC transporter C-terminal domain KM388_01455 PF02629 CoA binding domain KM388_01455 PF06971 Putative DNA-binding protein N-terminus KM388_01465 PF02517 CPBP intramembrane metalloprotease KM388_01470 PF00166 Chaperonin 10 Kd subunit KM388_01475 PF00118 TCP-1/cpn60 chaperonin family KM388_01480 PF00117 Glutamine amidotransferase class-I KM388_01480 PF02540 NAD synthase KM388_01480 PF00958 GMP synthase C terminal domain KM388_01485 PF00860 Permease family KM388_01490 PF00072 Response regulator receiver domain KM388_01490 PF00486 Transcriptional regulatory protein, C terminal KM388_01495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_01495 PF00512 His Kinase A (phospho-acceptor) domain KM388_01495 PF00989 PAS fold KM388_01495 PF16736 Single Cache-like KM388_01515 PF02673 Bacitracin resistance protein BacA KM388_01525 PF00005 ABC transporter KM388_01530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_01530 PF00512 His Kinase A (phospho-acceptor) domain KM388_01535 PF00072 Response regulator receiver domain KM388_01535 PF00486 Transcriptional regulatory protein, C terminal KM388_01555 PF02673 Bacitracin resistance protein BacA KM388_01565 PF00005 ABC transporter KM388_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_01570 PF00512 His Kinase A (phospho-acceptor) domain KM388_01575 PF00072 Response regulator receiver domain KM388_01575 PF00486 Transcriptional regulatory protein, C terminal KM388_01595 PF00731 AIR carboxylase KM388_01600 PF02222 ATP-grasp domain KM388_01600 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KM388_01605 PF10397 Adenylosuccinate lyase C-terminus KM388_01605 PF00206 Lyase KM388_01610 PF01259 SAICAR synthetase KM388_01615 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase KM388_01625 PF00586 AIR synthase related protein, N-terminal domain KM388_01625 PF02769 AIR synthase related protein, C-terminal domain KM388_01625 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KM388_01630 PF00156 Phosphoribosyl transferase domain KM388_01635 PF00586 AIR synthase related protein, N-terminal domain KM388_01635 PF02769 AIR synthase related protein, C-terminal domain KM388_01640 PF00551 Formyl transferase KM388_01645 PF02142 MGS-like domain KM388_01645 PF01808 AICARFT/IMPCHase bienzyme KM388_01650 PF02843 Phosphoribosylglycinamide synthetase, C domain KM388_01650 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KM388_01650 PF02844 Phosphoribosylglycinamide synthetase, N domain KM388_01670 PF01884 PcrB family KM388_01675 PF00580 UvrD/REP helicase N-terminal domain KM388_01675 PF13361 UvrD-like helicase C-terminal domain KM388_01680 PF00533 BRCA1 C Terminus (BRCT) domain KM388_01680 PF01653 NAD-dependent DNA ligase adenylation domain KM388_01680 PF03120 NAD-dependent DNA ligase OB-fold domain KM388_01680 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KM388_01680 PF12826 Helix-hairpin-helix motif KM388_01685 PF07537 CamS sex pheromone cAM373 precursor KM388_01690 PF01925 Sulfite exporter TauE/SafE KM388_01695 PF00171 Aldehyde dehydrogenase family KM388_01705 PF00857 Isochorismatase family KM388_01710 PF09383 NIL domain KM388_01710 PF00005 ABC transporter KM388_01715 PF00528 Binding-protein-dependent transport system inner membrane component KM388_01720 PF03180 NLPA lipoprotein KM388_01740 PF01047 MarR family KM388_01750 PF02686 Glu-tRNAGln amidotransferase C subunit KM388_01755 PF01425 Amidase KM388_01760 PF02934 GatB/GatE catalytic domain KM388_01760 PF02637 GatB domain KM388_01765 PF00781 Diacylglycerol kinase catalytic domain KM388_01770 PF13419 Haloacid dehalogenase-like hydrolase KM388_01775 PF00202 Aminotransferase class-III KM388_01780 PF00158 Sigma-54 interaction domain KM388_01785 PF00171 Aldehyde dehydrogenase family KM388_01790 PF00893 Small Multidrug Resistance protein KM388_01795 PF02073 Thermophilic metalloprotease (M29) KM388_01810 PF01773 Na+ dependent nucleoside transporter N-terminus KM388_01810 PF07662 Na+ dependent nucleoside transporter C-terminus KM388_01810 PF07670 Nucleoside recognition KM388_01815 PF05958 tRNA (Uracil-5-)-methyltransferase KM388_01815 PF02475 Met-10+ like-protein KM388_01815 PF01938 TRAM domain KM388_01820 PF01207 Dihydrouridine synthase (Dus) KM388_01830 PF07308 Protein of unknown function (DUF1456) KM388_01845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KM388_01845 PF13378 Enolase C-terminal domain-like KM388_01855 PF03553 Na+/H+ antiporter family KM388_01860 PF07687 Peptidase dimerisation domain KM388_01860 PF01546 Peptidase family M20/M25/M40 KM388_01870 PF13192 Thioredoxin domain KM388_01870 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_01875 PF00578 AhpC/TSA family KM388_01880 PF01636 Phosphotransferase enzyme family KM388_01885 PF01008 Initiation factor 2 subunit family KM388_01890 PF00596 Class II Aldolase and Adducin N-terminal domain KM388_01895 PF01032 FecCD transport family KM388_01900 PF01032 FecCD transport family KM388_01905 PF01497 Periplasmic binding protein KM388_01910 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_01920 PF12728 Helix-turn-helix domain KM388_01955 PF13188 PAS domain KM388_01955 PF13426 PAS domain KM388_01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_01955 PF00512 His Kinase A (phospho-acceptor) domain KM388_01955 PF00989 PAS fold KM388_01975 PF10127 RNA repair pathway DNA polymerase beta family KM388_01980 PF07690 Major Facilitator Superfamily KM388_01985 PF01266 FAD dependent oxidoreductase KM388_01985 PF00355 Rieske [2Fe-2S] domain KM388_01995 PF00528 Binding-protein-dependent transport system inner membrane component KM388_02000 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM388_02005 PF00005 ABC transporter KM388_02010 PF00672 HAMP domain KM388_02010 PF12729 Four helix bundle sensory module for signal transduction KM388_02010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_02015 PF12729 Four helix bundle sensory module for signal transduction KM388_02015 PF00672 HAMP domain KM388_02015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_02020 PF00128 Alpha amylase, catalytic domain KM388_02020 PF16657 Maltogenic Amylase, C-terminal domain KM388_02025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KM388_02025 PF00367 phosphotransferase system, EIIB KM388_02025 PF02378 Phosphotransferase system, EIIC KM388_02030 PF03372 Endonuclease/Exonuclease/phosphatase family KM388_02035 PF01061 ABC-2 type transporter KM388_02040 PF01131 DNA topoisomerase KM388_02040 PF01751 Toprim domain KM388_02045 PF02110 Hydroxyethylthiazole kinase family KM388_02050 PF02581 Thiamine monophosphate synthase KM388_02055 PF03605 Anaerobic c4-dicarboxylate membrane transporter KM388_02060 PF00672 HAMP domain KM388_02060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_02065 PF01910 Thiamine-binding protein KM388_02070 PF00528 Binding-protein-dependent transport system inner membrane component KM388_02080 PF00005 ABC transporter KM388_02085 PF12848 ABC transporter KM388_02085 PF00005 ABC transporter KM388_02110 PF00440 Bacterial regulatory proteins, tetR family KM388_02110 PF08360 QacR-like protein, C-terminal region KM388_02130 PF11700 Vacuole effluxer Atg22 like KM388_02145 PF09180 Prolyl-tRNA synthetase, C-terminal KM388_02145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM388_02145 PF03129 Anticodon binding domain KM388_02155 PF00480 ROK family KM388_02160 PF02342 TerD domain KM388_02165 PF02342 TerD domain KM388_02170 PF02342 TerD domain KM388_02175 PF03741 Integral membrane protein TerC family KM388_02180 PF14266 Putative component of 'biosynthetic module' KM388_02185 PF05816 Toxic anion resistance protein (TelA) KM388_02190 PF00690 Cation transporter/ATPase, N-terminus KM388_02190 PF00689 Cation transporting ATPase, C-terminus KM388_02195 PF06569 Protein of unknown function (DUF1128) KM388_02200 PF01451 Low molecular weight phosphotyrosine protein phosphatase KM388_02210 PF03631 Virulence factor BrkB KM388_02220 PF00892 EamA-like transporter family KM388_02240 PF09335 SNARE associated Golgi protein KM388_02255 PF16242 Pyridoxamine 5'-phosphate oxidase like KM388_02260 PF01699 Sodium/calcium exchanger protein KM388_02265 PF14167 YfkD-like protein KM388_02270 PF04055 Radical SAM superfamily KM388_02270 PF08756 YfkB-like domain KM388_02280 PF05681 Fumarate hydratase (Fumerase) KM388_02280 PF05683 Fumarase C-terminus KM388_02285 PF01522 Polysaccharide deacetylase KM388_02295 PF00730 HhH-GPD superfamily base excision DNA repair protein KM388_02300 PF01938 TRAM domain KM388_02300 PF05958 tRNA (Uracil-5-)-methyltransferase KM388_02305 PF14659 Phage integrase, N-terminal SAM-like domain KM388_02305 PF00589 Phage integrase family KM388_02315 PF01381 Helix-turn-helix KM388_02330 PF01381 Helix-turn-helix KM388_02365 PF07319 Primosomal protein DnaI N-terminus KM388_02365 PF01695 IstB-like ATP binding protein KM388_02585 PF01183 Glycosyl hydrolases family 25 KM388_02595 PF01416 tRNA pseudouridine synthase KM388_02605 PF00158 Sigma-54 interaction domain KM388_02605 PF13426 PAS domain KM388_02605 PF02954 Bacterial regulatory protein, Fis family KM388_02615 PF00324 Amino acid permease KM388_02620 PF01546 Peptidase family M20/M25/M40 KM388_02620 PF07687 Peptidase dimerisation domain KM388_02645 PF04960 Glutaminase KM388_02650 PF00367 phosphotransferase system, EIIB KM388_02650 PF02378 Phosphotransferase system, EIIC KM388_02655 PF00144 Beta-lactamase KM388_02670 PF00535 Glycosyl transferase family 2 KM388_02675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM388_02675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM388_02675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM388_02680 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM388_02680 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM388_02680 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM388_02685 PF01370 NAD dependent epimerase/dehydratase family KM388_02685 PF02911 Formyl transferase, C-terminal domain KM388_02685 PF00551 Formyl transferase KM388_02690 PF00535 Glycosyl transferase family 2 KM388_02700 PF01228 Glycine radical KM388_02700 PF02901 Pyruvate formate lyase-like KM388_02705 PF04055 Radical SAM superfamily KM388_02710 PF04101 Glycosyltransferase family 28 C-terminal domain KM388_02710 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase KM388_02725 PF01979 Amidohydrolase family KM388_02730 PF08338 Domain of unknown function (DUF1731) KM388_02730 PF01370 NAD dependent epimerase/dehydratase family KM388_02735 PF02631 RecX family KM388_02750 PF08176 Small acid-soluble spore protein K family KM388_02755 PF14043 WVELL protein KM388_02760 PF04307 LexA-binding, inner membrane-associated putative hydrolase KM388_02765 PF14815 NUDIX domain KM388_02765 PF00730 HhH-GPD superfamily base excision DNA repair protein KM388_02775 PF04259 Small, acid-soluble spore protein, gamma-type KM388_02780 PF14182 YgaB-like protein KM388_02785 PF04167 Protein of unknown function (DUF402) KM388_02790 PF00005 ABC transporter KM388_02790 PF00664 ABC transporter transmembrane region KM388_02795 PF06081 Aromatic acid exporter family member 1 KM388_02800 PF01645 Conserved region in glutamate synthase KM388_02800 PF01493 GXGXG motif KM388_02800 PF00310 Glutamine amidotransferases class-II KM388_02800 PF04898 Glutamate synthase central domain KM388_02805 PF00202 Aminotransferase class-III KM388_02810 PF00005 ABC transporter KM388_02825 PF07885 Ion channel KM388_02830 PF00578 AhpC/TSA family KM388_02835 PF01475 Ferric uptake regulator family KM388_02840 PF11023 Zinc-ribbon containing domain KM388_02940 PF01709 Transcriptional regulator KM388_02945 PF00293 NUDIX domain KM388_02945 PF13344 Haloacid dehalogenase-like hydrolase KM388_02950 PF00905 Penicillin binding protein transpeptidase domain KM388_02950 PF00912 Transglycosylase KM388_02955 PF13462 Thioredoxin KM388_02965 PF08331 Domain of unknown function (DUF1730) KM388_02970 PF12671 Putative amidase domain KM388_02975 PF00588 SpoU rRNA Methylase family KM388_02980 PF03707 Bacterial signalling protein N terminal repeat KM388_02980 PF00563 EAL domain KM388_02980 PF00990 Diguanylate cyclase, GGDEF domain KM388_02985 PF08298 PrkA AAA domain KM388_02985 PF06798 PrkA serine protein kinase C-terminal domain KM388_02990 PF04285 Protein of unknown function (DUF444) KM388_03005 PF02028 BCCT, betaine/carnitine/choline family transporter KM388_03010 PF18496 Collagenase G catalytic helper subdomain KM388_03010 PF08453 Peptidase family M9 N-terminal KM388_03010 PF01752 Collagenase KM388_03020 PF15975 Flotillin KM388_03020 PF01145 SPFH domain / Band 7 family KM388_03025 PF02743 Cache domain KM388_03025 PF00672 HAMP domain KM388_03025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_03030 PF00989 PAS fold KM388_03030 PF17203 Single cache domain 3 KM388_03030 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM388_03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_03035 PF12431 Transcriptional regulator KM388_03035 PF08279 HTH domain KM388_03035 PF00072 Response regulator receiver domain KM388_03040 PF03600 Citrate transporter KM388_03060 PF04309 Glycerol-3-phosphate responsive antiterminator KM388_03065 PF17912 MalK OB fold domain KM388_03065 PF00005 ABC transporter KM388_03070 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03075 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03085 PF00149 Calcineurin-like phosphoesterase KM388_03090 PF00072 Response regulator receiver domain KM388_03090 PF00486 Transcriptional regulatory protein, C terminal KM388_03095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_03095 PF00512 His Kinase A (phospho-acceptor) domain KM388_03105 PF13529 Peptidase_C39 like family KM388_03110 PF02743 Cache domain KM388_03110 PF00672 HAMP domain KM388_03110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_03115 PF17203 Single cache domain 3 KM388_03115 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM388_03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_03115 PF00989 PAS fold KM388_03120 PF00072 Response regulator receiver domain KM388_03125 PF03390 2-hydroxycarboxylate transporter family KM388_03130 PF03949 Malic enzyme, NAD binding domain KM388_03130 PF00390 Malic enzyme, N-terminal domain KM388_03140 PF00892 EamA-like transporter family KM388_03145 PF00155 Aminotransferase class I and II KM388_03145 PF00392 Bacterial regulatory proteins, gntR family KM388_03155 PF00512 His Kinase A (phospho-acceptor) domain KM388_03155 PF00989 PAS fold KM388_03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_03155 PF00672 HAMP domain KM388_03155 PF18698 Histidine kinase sensor domain KM388_03160 PF00486 Transcriptional regulatory protein, C terminal KM388_03160 PF00072 Response regulator receiver domain KM388_03165 PF00583 Acetyltransferase (GNAT) family KM388_03165 PF13508 Acetyltransferase (GNAT) domain KM388_03170 PF02634 FdhD/NarQ family KM388_03175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KM388_03175 PF00037 4Fe-4S binding domain KM388_03175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KM388_03175 PF01568 Molydopterin dinucleotide binding domain KM388_03175 PF00384 Molybdopterin oxidoreductase KM388_03180 PF07849 Protein of unknown function (DUF1641) KM388_03190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KM388_03190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KM388_03195 PF13520 Amino acid permease KM388_03200 PF01022 Bacterial regulatory protein, arsR family KM388_03205 PF00403 Heavy-metal-associated domain KM388_03210 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KM388_03210 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KM388_03210 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KM388_03225 PF07504 Fungalysin/Thermolysin Propeptide Motif KM388_03225 PF01447 Thermolysin metallopeptidase, catalytic domain KM388_03225 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM388_03225 PF03413 Peptidase propeptide and YPEB domain KM388_03245 PF04294 VanW like protein KM388_03250 PF03816 Cell envelope-related transcriptional attenuator domain KM388_03255 PF01773 Na+ dependent nucleoside transporter N-terminus KM388_03255 PF07662 Na+ dependent nucleoside transporter C-terminus KM388_03260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_03265 PF03471 Transporter associated domain KM388_03265 PF00571 CBS domain KM388_03265 PF01595 Cyclin M transmembrane N-terminal domain KM388_03270 PF10415 Fumarase C C-terminus KM388_03270 PF00206 Lyase KM388_03275 PF02652 L-lactate permease KM388_03280 PF01022 Bacterial regulatory protein, arsR family KM388_03285 PF08141 Small acid-soluble spore protein H family KM388_03290 PF00854 POT family KM388_03295 PF01497 Periplasmic binding protein KM388_03300 PF01032 FecCD transport family KM388_03305 PF01032 FecCD transport family KM388_03310 PF00005 ABC transporter KM388_03315 PF08241 Methyltransferase domain KM388_03320 PF00155 Aminotransferase class I and II KM388_03325 PF01370 NAD dependent epimerase/dehydratase family KM388_03330 PF13344 Haloacid dehalogenase-like hydrolase KM388_03330 PF00293 NUDIX domain KM388_03335 PF00092 von Willebrand factor type A domain KM388_03340 PF07728 AAA domain (dynein-related subfamily) KM388_03345 PF13396 Phospholipase_D-nuclease N-terminal KM388_03345 PF13091 PLD-like domain KM388_03360 PF03707 Bacterial signalling protein N terminal repeat KM388_03360 PF00990 Diguanylate cyclase, GGDEF domain KM388_03360 PF00563 EAL domain KM388_03365 PF13520 Amino acid permease KM388_03370 PF07702 UTRA domain KM388_03370 PF00392 Bacterial regulatory proteins, gntR family KM388_03375 PF00367 phosphotransferase system, EIIB KM388_03375 PF02378 Phosphotransferase system, EIIC KM388_03380 PF00128 Alpha amylase, catalytic domain KM388_03380 PF16657 Maltogenic Amylase, C-terminal domain KM388_03395 PF03323 Bacillus/Clostridium GerA spore germination protein KM388_03405 PF01636 Phosphotransferase enzyme family KM388_03410 PF01235 Sodium:alanine symporter family KM388_03415 PF00005 ABC transporter KM388_03420 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM388_03425 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03430 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03435 PF00324 Amino acid permease KM388_03460 PF08279 HTH domain KM388_03460 PF13280 WYL domain KM388_03465 PF01872 RibD C-terminal domain KM388_03470 PF00989 PAS fold KM388_03470 PF00512 His Kinase A (phospho-acceptor) domain KM388_03470 PF18698 Histidine kinase sensor domain KM388_03470 PF00672 HAMP domain KM388_03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_03475 PF00486 Transcriptional regulatory protein, C terminal KM388_03475 PF00072 Response regulator receiver domain KM388_03485 PF01740 STAS domain KM388_03485 PF00916 Sulfate permease family KM388_03490 PF00582 Universal stress protein family KM388_03500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_03505 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03510 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_03515 PF00005 ABC transporter KM388_03520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_03520 PF00005 ABC transporter KM388_03525 PF07690 Major Facilitator Superfamily KM388_03530 PF01047 MarR family KM388_03540 PF00356 Bacterial regulatory proteins, lacI family KM388_03545 PF00294 pfkB family carbohydrate kinase KM388_03550 PF05025 RbsD / FucU transport protein family KM388_03555 PF00005 ABC transporter KM388_03560 PF02653 Branched-chain amino acid transport system / permease component KM388_03565 PF13407 Periplasmic binding protein domain KM388_03570 PF00923 Transaldolase/Fructose-6-phosphate aldolase KM388_03575 PF05547 Immune inhibitor A peptidase M6 KM388_03590 PF08240 Alcohol dehydrogenase GroES-like domain KM388_03590 PF00107 Zinc-binding dehydrogenase KM388_03600 PF00882 Zinc dependent phospholipase C KM388_03605 PF03372 Endonuclease/Exonuclease/phosphatase family KM388_03630 PF02673 Bacitracin resistance protein BacA KM388_03635 PF00672 HAMP domain KM388_03635 PF02743 Cache domain KM388_03635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_03640 PF01476 LysM domain KM388_03640 PF06725 3D domain KM388_03645 PF01381 Helix-turn-helix KM388_03655 PF04203 Sortase domain KM388_03660 PF00854 POT family KM388_03665 PF05525 Branched-chain amino acid transport protein KM388_03680 PF00324 Amino acid permease KM388_03685 PF00860 Permease family KM388_03710 PF02080 TrkA-C domain KM388_03710 PF02254 TrkA-N domain KM388_03710 PF00999 Sodium/hydrogen exchanger family KM388_03720 PF00510 Cytochrome c oxidase subunit III KM388_03725 PF00115 Cytochrome C and Quinol oxidase polypeptide I KM388_03730 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KM388_03735 PF00324 Amino acid permease KM388_03740 PF13529 Peptidase_C39 like family KM388_03745 PF07687 Peptidase dimerisation domain KM388_03745 PF01546 Peptidase family M20/M25/M40 KM388_03750 PF11755 Protein of unknown function (DUF3311) KM388_03755 PF00474 Sodium:solute symporter family KM388_03760 PF03323 Bacillus/Clostridium GerA spore germination protein KM388_03765 PF03845 Spore germination protein KM388_03770 PF05504 Spore germination B3/ GerAC like, C-terminal KM388_03775 PF07670 Nucleoside recognition KM388_03775 PF17910 FeoB cytosolic helical domain KM388_03775 PF07664 Ferrous iron transport protein B C terminus KM388_03775 PF02421 Ferrous iron transport protein B KM388_03780 PF17910 FeoB cytosolic helical domain KM388_03780 PF02421 Ferrous iron transport protein B KM388_03780 PF07670 Nucleoside recognition KM388_03780 PF07664 Ferrous iron transport protein B C terminus KM388_03785 PF07670 Nucleoside recognition KM388_03785 PF07664 Ferrous iron transport protein B C terminus KM388_03785 PF17910 FeoB cytosolic helical domain KM388_03785 PF04023 FeoA domain KM388_03785 PF02421 Ferrous iron transport protein B KM388_03790 PF12849 PBP superfamily domain KM388_03795 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03800 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03810 PF00873 AcrB/AcrD/AcrF family KM388_03930 PF00571 CBS domain KM388_03945 PF08239 Bacterial SH3 domain KM388_03945 PF00246 Zinc carboxypeptidase KM388_03950 PF03070 TENA/THI-4/PQQC family KM388_03955 PF00005 ABC transporter KM388_03960 PF00528 Binding-protein-dependent transport system inner membrane component KM388_03965 PF09084 NMT1/THI5 like KM388_03970 PF02581 Thiamine monophosphate synthase KM388_03975 PF01266 FAD dependent oxidoreductase KM388_03980 PF02597 ThiS family KM388_03985 PF05690 Thiazole biosynthesis protein ThiG KM388_03990 PF00899 ThiF family KM388_03995 PF08543 Phosphomethylpyrimidine kinase KM388_04020 PF03814 Potassium-transporting ATPase A subunit KM388_04030 PF02669 K+-transporting ATPase, c chain KM388_04035 PF02702 Osmosensitive K+ channel His kinase sensor domain KM388_04040 PF07690 Major Facilitator Superfamily KM388_04045 PF01047 MarR family KM388_04060 PF00860 Permease family KM388_04070 PF03734 L,D-transpeptidase catalytic domain KM388_04070 PF17969 L,D-transpeptidase C-terminal domain KM388_04080 PF00294 pfkB family carbohydrate kinase KM388_04085 PF08244 Glycosyl hydrolases family 32 C terminal KM388_04085 PF00251 Glycosyl hydrolases family 32 N-terminal domain KM388_04090 PF02378 Phosphotransferase system, EIIC KM388_04090 PF00367 phosphotransferase system, EIIB KM388_04095 PF13407 Periplasmic binding protein domain KM388_04095 PF00356 Bacterial regulatory proteins, lacI family KM388_04105 PF00085 Thioredoxin KM388_04110 PF02600 Disulfide bond formation protein DsbB KM388_04115 PF14148 YhdB-like protein KM388_04135 PF03323 Bacillus/Clostridium GerA spore germination protein KM388_04145 PF00881 Nitroreductase family KM388_04150 PF04293 SpoVR like protein KM388_04175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM388_04175 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_04180 PF02583 Metal-sensitive transcriptional repressor KM388_04185 PF01206 Sulfurtransferase TusA KM388_04185 PF00581 Rhodanese-like domain KM388_04190 PF00753 Metallo-beta-lactamase superfamily KM388_04190 PF00581 Rhodanese-like domain KM388_04195 PF01206 Sulfurtransferase TusA KM388_04200 PF00581 Rhodanese-like domain KM388_04210 PF13686 DsrE/DsrF/DrsH-like family KM388_04215 PF01925 Sulfite exporter TauE/SafE KM388_04225 PF03816 Cell envelope-related transcriptional attenuator domain KM388_04230 PF00107 Zinc-binding dehydrogenase KM388_04230 PF08240 Alcohol dehydrogenase GroES-like domain KM388_04235 PF02690 Na+/Pi-cotransporter KM388_04240 PF07690 Major Facilitator Superfamily KM388_04250 PF08279 HTH domain KM388_04250 PF05043 Mga helix-turn-helix domain KM388_04250 PF00874 PRD domain KM388_04250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KM388_04255 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KM388_04260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM388_04265 PF02378 Phosphotransferase system, EIIC KM388_04280 PF06725 3D domain KM388_04280 PF01476 LysM domain KM388_04285 PF12704 MacB-like periplasmic core domain KM388_04285 PF02687 FtsX-like permease family KM388_04290 PF00005 ABC transporter KM388_04300 PF09529 Integral membrane protein (intg_mem_TP0381) KM388_04315 PF05525 Branched-chain amino acid transport protein KM388_04320 PF05067 Manganese containing catalase KM388_04325 PF12652 CotJB protein KM388_04330 PF11007 Spore coat associated protein JA (CotJA) KM388_04345 PF02735 Ku70/Ku80 beta-barrel domain KM388_04355 PF09335 SNARE associated Golgi protein KM388_04390 PF13520 Amino acid permease KM388_04395 PF00999 Sodium/hydrogen exchanger family KM388_04405 PF01418 Helix-turn-helix domain, rpiR family KM388_04405 PF01380 SIS domain KM388_04410 PF01380 SIS domain KM388_04415 PF00367 phosphotransferase system, EIIB KM388_04415 PF02378 Phosphotransferase system, EIIC KM388_04425 PF07681 DoxX KM388_04440 PF00892 EamA-like transporter family KM388_04445 PF01037 Lrp/AsnC ligand binding domain KM388_04455 PF00893 Small Multidrug Resistance protein KM388_04460 PF00893 Small Multidrug Resistance protein KM388_04465 PF17934 Tetracyclin repressor-like, C-terminal domain KM388_04465 PF00440 Bacterial regulatory proteins, tetR family KM388_04470 PF07690 Major Facilitator Superfamily KM388_04475 PF01638 HxlR-like helix-turn-helix KM388_04485 PF02525 Flavodoxin-like fold KM388_04490 PF12793 Sugar transport-related sRNA regulator N-term KM388_04490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_04495 PF07690 Major Facilitator Superfamily KM388_04505 PF01965 DJ-1/PfpI family KM388_04510 PF06628 Catalase-related immune-responsive KM388_04510 PF18011 C-terminal domain found in long catalases KM388_04510 PF00199 Catalase KM388_04520 PF13520 Amino acid permease KM388_04525 PF01177 Asp/Glu/Hydantoin racemase KM388_04535 PF00171 Aldehyde dehydrogenase family KM388_04540 PF00005 ABC transporter KM388_04540 PF00664 ABC transporter transmembrane region KM388_04550 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM388_04555 PF00528 Binding-protein-dependent transport system inner membrane component KM388_04560 PF00005 ABC transporter KM388_04565 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM388_04575 PF14398 YheC/D like ATP-grasp KM388_04585 PF04286 Protein of unknown function (DUF445) KM388_04590 PF06133 Control of competence regulator ComK, YlbF/YmcA KM388_04605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM388_04605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM388_04605 PF00205 Thiamine pyrophosphate enzyme, central domain KM388_04610 PF03306 Alpha-acetolactate decarboxylase KM388_04620 PF02245 Methylpurine-DNA glycosylase (MPG) KM388_04640 PF04055 Radical SAM superfamily KM388_04645 PF13193 AMP-binding enzyme C-terminal domain KM388_04645 PF00501 AMP-binding enzyme KM388_04655 PF01740 STAS domain KM388_04655 PF00916 Sulfate permease family KM388_04675 PF07517 SecA DEAD-like domain KM388_04675 PF01043 SecA preprotein cross-linking domain KM388_04675 PF07516 SecA Wing and Scaffold domain KM388_04680 PF14667 Polysaccharide biosynthesis C-terminal domain KM388_04680 PF01943 Polysaccharide biosynthesis protein KM388_04690 PF13205 Bacterial Ig-like domain KM388_04690 PF00395 S-layer homology domain KM388_04690 PF02368 Bacterial Ig-like domain (group 2) KM388_04695 PF00395 S-layer homology domain KM388_04705 PF03062 MBOAT, membrane-bound O-acyltransferase family KM388_04710 PF03062 MBOAT, membrane-bound O-acyltransferase family KM388_04725 PF00378 Enoyl-CoA hydratase/isomerase KM388_04740 PF05343 M42 glutamyl aminopeptidase KM388_04745 PF00395 S-layer homology domain KM388_04745 PF01520 N-acetylmuramoyl-L-alanine amidase KM388_04755 PF11121 Protein of unknown function (DUF2639) KM388_04760 PF05544 Proline racemase KM388_04765 PF02423 Ornithine cyclodeaminase/mu-crystallin family KM388_04800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_04805 PF00528 Binding-protein-dependent transport system inner membrane component KM388_04810 PF00528 Binding-protein-dependent transport system inner membrane component KM388_04810 PF12911 N-terminal TM domain of oligopeptide transport permease C KM388_04820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_04820 PF00005 ABC transporter KM388_04825 PF01541 GIY-YIG catalytic domain KM388_04855 PF00083 Sugar (and other) transporter KM388_04860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_04860 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM388_04865 PF12431 Transcriptional regulator KM388_04865 PF08279 HTH domain KM388_04865 PF00072 Response regulator receiver domain KM388_04870 PF03401 Tripartite tricarboxylate transporter family receptor KM388_04875 PF02342 TerD domain KM388_04900 PF06445 GyrI-like small molecule binding domain KM388_04900 PF13411 MerR HTH family regulatory protein KM388_04915 PF00772 DnaB-like helicase N terminal domain KM388_04915 PF03796 DnaB-like helicase C terminal domain KM388_04940 PF01925 Sulfite exporter TauE/SafE KM388_04955 PF07690 Major Facilitator Superfamily KM388_05005 PF18665 Tetracyclin repressor-like, C-terminal domain KM388_05005 PF00440 Bacterial regulatory proteins, tetR family KM388_05025 PF01066 CDP-alcohol phosphatidyltransferase KM388_05045 PF02733 Dak1 domain KM388_05055 PF02733 Dak1 domain KM388_05060 PF02525 Flavodoxin-like fold KM388_05065 PF02082 Transcriptional regulator KM388_05095 PF01966 HD domain KM388_05095 PF00672 HAMP domain KM388_05115 PF00395 S-layer homology domain KM388_05140 PF11181 Heat induced stress protein YflT KM388_05145 PF05532 CsbD-like KM388_05160 PF01740 STAS domain KM388_05165 PF13581 Histidine kinase-like ATPase domain KM388_05170 PF04539 Sigma-70 region 3 KM388_05170 PF04542 Sigma-70 region 2 KM388_05170 PF04545 Sigma-70, region 4 KM388_05180 PF07228 Stage II sporulation protein E (SpoIIE) KM388_05180 PF13426 PAS domain KM388_05185 PF01739 CheR methyltransferase, SAM binding domain KM388_05185 PF03705 CheR methyltransferase, all-alpha domain KM388_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_05190 PF00512 His Kinase A (phospho-acceptor) domain KM388_05190 PF01627 Hpt domain KM388_05190 PF00072 Response regulator receiver domain KM388_05190 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM388_05215 PF01906 Putative heavy-metal-binding KM388_05225 PF00107 Zinc-binding dehydrogenase KM388_05225 PF08240 Alcohol dehydrogenase GroES-like domain KM388_05230 PF11121 Protein of unknown function (DUF2639) KM388_05245 PF00149 Calcineurin-like phosphoesterase KM388_05250 PF13514 AAA domain KM388_05255 PF12323 Helix-turn-helix domain KM388_05255 PF01385 Probable transposase KM388_05255 PF07282 Putative transposase DNA-binding domain KM388_05265 PF01966 HD domain KM388_05265 PF01336 OB-fold nucleic acid binding domain KM388_05270 PF00440 Bacterial regulatory proteins, tetR family KM388_05275 PF07690 Major Facilitator Superfamily KM388_05280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_05285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_05290 PF18801 response regulator aspartate phosphatase H, N terminal KM388_05295 PF08386 TAP-like protein KM388_05295 PF00561 alpha/beta hydrolase fold KM388_05315 PF04309 Glycerol-3-phosphate responsive antiterminator KM388_05320 PF00230 Major intrinsic protein KM388_05325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM388_05325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM388_05330 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KM388_05330 PF01266 FAD dependent oxidoreductase KM388_05345 PF04542 Sigma-70 region 2 KM388_05345 PF08281 Sigma-70, region 4 KM388_05370 PF07690 Major Facilitator Superfamily KM388_05375 PF07690 Major Facilitator Superfamily KM388_05385 PF13538 UvrD-like helicase C-terminal domain KM388_05405 PF01047 MarR family KM388_05410 PF12732 YtxH-like protein KM388_05415 PF01230 HIT domain KM388_05420 PF00005 ABC transporter KM388_05425 PF05975 Bacterial ABC transporter protein EcsB KM388_05430 PF12787 EcsC protein family KM388_05440 PF00440 Bacterial regulatory proteins, tetR family KM388_05440 PF17934 Tetracyclin repressor-like, C-terminal domain KM388_05450 PF03703 Bacterial PH domain KM388_05495 PF03703 Bacterial PH domain KM388_05500 PF03703 Bacterial PH domain KM388_05505 PF03992 Antibiotic biosynthesis monooxygenase KM388_05510 PF00912 Transglycosylase KM388_05510 PF00905 Penicillin binding protein transpeptidase domain KM388_05515 PF01208 Uroporphyrinogen decarboxylase (URO-D) KM388_05520 PF00762 Ferrochelatase KM388_05525 PF01593 Flavin containing amine oxidoreductase KM388_05550 PF03965 Penicillinase repressor KM388_05560 PF00440 Bacterial regulatory proteins, tetR family KM388_05560 PF17932 Tetracyclin repressor-like, C-terminal domain KM388_05590 PF00356 Bacterial regulatory proteins, lacI family KM388_05595 PF14149 YhfH-like protein KM388_05600 PF12706 Beta-lactamase superfamily domain KM388_05605 PF03099 Biotin/lipoate A/B protein ligase family KM388_05605 PF10437 Bacterial lipoate protein ligase C-terminus KM388_05615 PF00501 AMP-binding enzyme KM388_05615 PF13193 AMP-binding enzyme C-terminal domain KM388_05625 PF00395 S-layer homology domain KM388_05625 PF01520 N-acetylmuramoyl-L-alanine amidase KM388_05630 PF05593 RHS Repeat KM388_05645 PF05593 RHS Repeat KM388_05685 PF01966 HD domain KM388_05695 PF04542 Sigma-70 region 2 KM388_05695 PF08281 Sigma-70, region 4 KM388_05700 PF12833 Helix-turn-helix domain KM388_05700 PF06445 GyrI-like small molecule binding domain KM388_05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_05715 PF00512 His Kinase A (phospho-acceptor) domain KM388_05720 PF00072 Response regulator receiver domain KM388_05720 PF00486 Transcriptional regulatory protein, C terminal KM388_05745 PF01435 Peptidase family M48 KM388_05745 PF16491 CAAX prenyl protease N-terminal, five membrane helices KM388_05750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_05750 PF00672 HAMP domain KM388_05750 PF02743 Cache domain KM388_05755 PF00892 EamA-like transporter family KM388_05760 PF03424 Carbohydrate binding domain (family 17/28) KM388_05760 PF00150 Cellulase (glycosyl hydrolase family 5) KM388_05760 PF00395 S-layer homology domain KM388_05770 PF00395 S-layer homology domain KM388_05775 PF01274 Malate synthase KM388_05780 PF00463 Isocitrate lyase family KM388_05790 PF00313 'Cold-shock' DNA-binding domain KM388_05805 PF06338 ComK protein KM388_05810 PF09335 SNARE associated Golgi protein KM388_05815 PF10502 Signal peptidase, peptidase S26 KM388_05820 PF13361 UvrD-like helicase C-terminal domain KM388_05820 PF12705 PD-(D/E)XK nuclease superfamily KM388_05825 PF13361 UvrD-like helicase C-terminal domain KM388_05825 PF00580 UvrD/REP helicase N-terminal domain KM388_05825 PF12705 PD-(D/E)XK nuclease superfamily KM388_05835 PF10676 Spore germination protein gerPA/gerPF KM388_05840 PF10970 Spore germination protein GerPE KM388_05850 PF10737 Spore germination protein GerPC KM388_05855 PF10803 Spore germination GerPB KM388_05860 PF10676 Spore germination protein gerPA/gerPF KM388_05870 PF01557 Fumarylacetoacetate (FAA) hydrolase family KM388_05880 PF00202 Aminotransferase class-III KM388_05885 PF07457 Protein of unknown function (DUF1516) KM388_05895 PF00733 Asparagine synthase KM388_05895 PF13537 Glutamine amidotransferase domain KM388_05900 PF00762 Ferrochelatase KM388_05905 PF00199 Catalase KM388_05905 PF06628 Catalase-related immune-responsive KM388_05910 PF00909 Ammonium Transporter Family KM388_05915 PF00128 Alpha amylase, catalytic domain KM388_05925 PF04461 Protein of unknown function (DUF520) KM388_05930 PF17783 CvfB-like winged helix domain KM388_05930 PF13509 S1 domain KM388_05940 PF00639 PPIC-type PPIASE domain KM388_05950 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_05950 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_05955 PF12758 Protein of unknown function (DUF3813) KM388_05970 PF14168 YjzC-like protein KM388_05975 PF07724 AAA domain (Cdc48 subfamily) KM388_05975 PF17871 AAA lid domain KM388_05975 PF02861 Clp amino terminal domain, pathogenicity island component KM388_05975 PF10431 C-terminal, D2-small domain, of ClpB protein KM388_05975 PF00004 ATPase family associated with various cellular activities (AAA) KM388_05995 PF10815 ComZ KM388_06000 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM388_06000 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM388_06005 PF02801 Beta-ketoacyl synthase, C-terminal domain KM388_06005 PF00109 Beta-ketoacyl synthase, N-terminal domain KM388_06010 PF10026 Predicted Zn-dependent protease (DUF2268) KM388_06015 PF12227 Protein of unknown function (DUF3603) KM388_06020 PF00579 tRNA synthetases class I (W and Y) KM388_06030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_06035 PF00528 Binding-protein-dependent transport system inner membrane component KM388_06040 PF12911 N-terminal TM domain of oligopeptide transport permease C KM388_06040 PF00528 Binding-protein-dependent transport system inner membrane component KM388_06045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_06045 PF00005 ABC transporter KM388_06050 PF00005 ABC transporter KM388_06050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_06055 PF01554 MatE KM388_06060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_06070 PF03960 ArsC family KM388_06075 PF03741 Integral membrane protein TerC family KM388_06080 PF05389 Negative regulator of genetic competence (MecA) KM388_06085 PF13396 Phospholipase_D-nuclease N-terminal KM388_06085 PF13091 PLD-like domain KM388_06095 PF08439 Oligopeptidase F KM388_06095 PF01432 Peptidase family M3 KM388_06110 PF01152 Bacterial-like globin KM388_06115 PF01928 CYTH domain KM388_06125 PF04607 Region found in RelA / SpoT proteins KM388_06130 PF01513 ATP-NAD kinase KM388_06135 PF00849 RNA pseudouridylate synthase KM388_06145 PF00149 Calcineurin-like phosphoesterase KM388_06155 PF00535 Glycosyl transferase family 2 KM388_06160 PF08241 Methyltransferase domain KM388_06165 PF05711 Macrocin-O-methyltransferase (TylF) KM388_06175 PF13181 Tetratricopeptide repeat KM388_06175 PF00535 Glycosyl transferase family 2 KM388_06195 PF00483 Nucleotidyl transferase KM388_06200 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KM388_06205 PF16363 GDP-mannose 4,6 dehydratase KM388_06210 PF04321 RmlD substrate binding domain KM388_06230 PF07098 Protein of unknown function (DUF1360) KM388_06250 PF00580 UvrD/REP helicase N-terminal domain KM388_06250 PF13361 UvrD-like helicase C-terminal domain KM388_06255 PF13673 Acetyltransferase (GNAT) domain KM388_06265 PF00756 Putative esterase KM388_06280 PF02368 Bacterial Ig-like domain (group 2) KM388_06285 PF00474 Sodium:solute symporter family KM388_06290 PF04715 Anthranilate synthase component I, N terminal region KM388_06290 PF00425 chorismate binding enzyme KM388_06295 PF00117 Glutamine amidotransferase class-I KM388_06295 PF02885 Glycosyl transferase family, helical bundle domain KM388_06295 PF00591 Glycosyl transferase family, a/b domain KM388_06300 PF02885 Glycosyl transferase family, helical bundle domain KM388_06300 PF00591 Glycosyl transferase family, a/b domain KM388_06305 PF00218 Indole-3-glycerol phosphate synthase KM388_06310 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KM388_06315 PF00291 Pyridoxal-phosphate dependent enzyme KM388_06330 PF02652 L-lactate permease KM388_06335 PF10042 Uncharacterized conserved protein (DUF2278) KM388_06360 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_06360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM388_06390 PF02817 e3 binding domain KM388_06390 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM388_06390 PF00364 Biotin-requiring enzyme KM388_06395 PF02779 Transketolase, pyrimidine binding domain KM388_06395 PF16870 2-oxoglutarate dehydrogenase C-terminal KM388_06395 PF00676 Dehydrogenase E1 component KM388_06400 PF01381 Helix-turn-helix KM388_06460 PF13649 Methyltransferase domain KM388_06470 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_06470 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_06480 PF12389 Camelysin metallo-endopeptidase KM388_06490 PF12389 Camelysin metallo-endopeptidase KM388_06495 PF08671 Anti-repressor SinI KM388_06495 PF01381 Helix-turn-helix KM388_06505 PF05547 Immune inhibitor A peptidase M6 KM388_06510 PF00171 Aldehyde dehydrogenase family KM388_06515 PF08402 TOBE domain KM388_06515 PF00005 ABC transporter KM388_06520 PF00528 Binding-protein-dependent transport system inner membrane component KM388_06525 PF00528 Binding-protein-dependent transport system inner membrane component KM388_06530 PF13416 Bacterial extracellular solute-binding protein KM388_06540 PF03176 MMPL family KM388_06550 PF01479 S4 domain KM388_06550 PF00849 RNA pseudouridylate synthase KM388_06560 PF00188 Cysteine-rich secretory protein family KM388_06565 PF02754 Cysteine-rich domain KM388_06565 PF13183 4Fe-4S dicluster domain KM388_06570 PF01565 FAD binding domain KM388_06570 PF02913 FAD linked oxidases, C-terminal domain KM388_06575 PF13556 PucR C-terminal helix-turn-helix domain KM388_06575 PF17853 GGDEF-like domain KM388_06575 PF05651 Putative sugar diacid recognition KM388_06585 PF00072 Response regulator receiver domain KM388_06585 PF00486 Transcriptional regulatory protein, C terminal KM388_06590 PF00672 HAMP domain KM388_06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_06590 PF18698 Histidine kinase sensor domain KM388_06590 PF00989 PAS fold KM388_06590 PF00512 His Kinase A (phospho-acceptor) domain KM388_06595 PF00392 Bacterial regulatory proteins, gntR family KM388_06595 PF07729 FCD domain KM388_06600 PF02754 Cysteine-rich domain KM388_06605 PF02589 LUD domain KM388_06605 PF11870 Domain of unknown function (DUF3390) KM388_06605 PF13183 4Fe-4S dicluster domain KM388_06610 PF02589 LUD domain KM388_06615 PF06750 Bacterial Peptidase A24 N-terminal domain KM388_06615 PF01478 Type IV leader peptidase family KM388_06625 PF01226 Formate/nitrite transporter KM388_06630 PF03741 Integral membrane protein TerC family KM388_06640 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM388_06645 PF01575 MaoC like domain KM388_06670 PF00561 alpha/beta hydrolase fold KM388_06675 PF01266 FAD dependent oxidoreductase KM388_06680 PF02386 Cation transport protein KM388_06710 PF13419 Haloacid dehalogenase-like hydrolase KM388_06715 PF00266 Aminotransferase class-V KM388_06725 PF00455 DeoR C terminal sensor domain KM388_06725 PF08220 DeoR-like helix-turn-helix domain KM388_06745 PF04748 Divergent polysaccharide deacetylase KM388_06750 PF09388 Spo0E like sporulation regulatory protein KM388_06755 PF00512 His Kinase A (phospho-acceptor) domain KM388_06755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_06755 PF02743 Cache domain KM388_06760 PF01047 MarR family KM388_06770 PF12867 DinB superfamily KM388_06775 PF00989 PAS fold KM388_06775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_06775 PF13426 PAS domain KM388_06775 PF13188 PAS domain KM388_06775 PF00512 His Kinase A (phospho-acceptor) domain KM388_06780 PF06508 Queuosine biosynthesis protein QueC KM388_06785 PF01242 6-pyruvoyl tetrahydropterin synthase KM388_06790 PF04055 Radical SAM superfamily KM388_06795 PF14489 QueF-like protein KM388_06800 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) KM388_06830 PF07972 NrdI Flavodoxin like KM388_06850 PF00268 Ribonucleotide reductase, small chain KM388_06855 PF00392 Bacterial regulatory proteins, gntR family KM388_06860 PF00005 ABC transporter KM388_06870 PF00005 ABC transporter KM388_06890 PF01037 Lrp/AsnC ligand binding domain KM388_06900 PF00857 Isochorismatase family KM388_06910 PF17676 LD-carboxypeptidase C-terminal domain KM388_06910 PF02016 LD-carboxypeptidase N-terminal domain KM388_06915 PF03060 Nitronate monooxygenase KM388_06920 PF04914 DltD protein KM388_06925 PF00550 Phosphopantetheine attachment site KM388_06930 PF03062 MBOAT, membrane-bound O-acyltransferase family KM388_06935 PF00501 AMP-binding enzyme KM388_06935 PF13193 AMP-binding enzyme C-terminal domain KM388_06945 PF07687 Peptidase dimerisation domain KM388_06945 PF01546 Peptidase family M20/M25/M40 KM388_06955 PF00258 Flavodoxin KM388_06970 PF01636 Phosphotransferase enzyme family KM388_06990 PF01554 MatE KM388_06995 PF02673 Bacitracin resistance protein BacA KM388_07010 PF01047 MarR family KM388_07020 PF00375 Sodium:dicarboxylate symporter family KM388_07025 PF02386 Cation transport protein KM388_07035 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KM388_07045 PF03698 Uncharacterised protein family (UPF0180) KM388_07060 PF01063 Amino-transferase class IV KM388_07065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM388_07065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM388_07065 PF00205 Thiamine pyrophosphate enzyme, central domain KM388_07070 PF10369 Small subunit of acetolactate synthase KM388_07070 PF01842 ACT domain KM388_07075 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KM388_07075 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KM388_07080 PF08502 LeuA allosteric (dimerisation) domain KM388_07080 PF00682 HMGL-like KM388_07085 PF00180 Isocitrate/isopropylmalate dehydrogenase KM388_07090 PF00330 Aconitase family (aconitate hydratase) KM388_07095 PF00694 Aconitase C-terminal domain KM388_07100 PF13393 Histidyl-tRNA synthetase KM388_07105 PF01634 ATP phosphoribosyltransferase KM388_07110 PF00815 Histidinol dehydrogenase KM388_07115 PF00475 Imidazoleglycerol-phosphate dehydratase KM388_07120 PF00117 Glutamine amidotransferase class-I KM388_07125 PF00977 Histidine biosynthesis protein KM388_07130 PF00977 Histidine biosynthesis protein KM388_07135 PF01502 Phosphoribosyl-AMP cyclohydrolase KM388_07140 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KM388_07145 PF02811 PHP domain KM388_07155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KM388_07155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KM388_07160 PF01066 CDP-alcohol phosphatidyltransferase KM388_07165 PF00884 Sulfatase KM388_07175 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KM388_07175 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KM388_07185 PF01507 Phosphoadenosine phosphosulfate reductase family KM388_07190 PF14306 PUA-like domain KM388_07190 PF01747 ATP-sulfurylase KM388_07200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KM388_07200 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KM388_07210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM388_07215 PF01903 CbiX KM388_07225 PF00209 Sodium:neurotransmitter symporter family KM388_07235 PF00375 Sodium:dicarboxylate symporter family KM388_07245 PF03553 Na+/H+ antiporter family KM388_07260 PF09922 Cell wall-active antibiotics response 4TMS YvqF KM388_07265 PF00672 HAMP domain KM388_07265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_07265 PF07730 Histidine kinase KM388_07270 PF00072 Response regulator receiver domain KM388_07270 PF00196 Bacterial regulatory proteins, luxR family KM388_07280 PF05525 Branched-chain amino acid transport protein KM388_07290 PF08241 Methyltransferase domain KM388_07315 PF00042 Globin KM388_07315 PF00175 Oxidoreductase NAD-binding domain KM388_07315 PF00970 Oxidoreductase FAD-binding domain KM388_07330 PF01925 Sulfite exporter TauE/SafE KM388_07335 PF01384 Phosphate transporter family KM388_07340 PF01865 Protein of unknown function DUF47 KM388_07345 PF00905 Penicillin binding protein transpeptidase domain KM388_07345 PF00912 Transglycosylase KM388_07365 PF01904 Protein of unknown function DUF72 KM388_07375 PF00589 Phage integrase family KM388_07380 PF00989 PAS fold KM388_07380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_07380 PF00512 His Kinase A (phospho-acceptor) domain KM388_07380 PF16736 Single Cache-like KM388_07385 PF01048 Phosphorylase superfamily KM388_07400 PF03706 Lysylphosphatidylglycerol synthase TM region KM388_07400 PF09924 Uncharacterised conserved protein (DUF2156) KM388_07415 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KM388_07415 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KM388_07420 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_07420 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_07425 PF07670 Nucleoside recognition KM388_07430 PF07670 Nucleoside recognition KM388_07435 PF01479 S4 domain KM388_07435 PF00849 RNA pseudouridylate synthase KM388_07440 PF00578 AhpC/TSA family KM388_07445 PF05140 ResB-like family KM388_07450 PF01578 Cytochrome C assembly protein KM388_07455 PF00072 Response regulator receiver domain KM388_07455 PF00486 Transcriptional regulatory protein, C terminal KM388_07460 PF00989 PAS fold KM388_07460 PF00512 His Kinase A (phospho-acceptor) domain KM388_07460 PF00672 HAMP domain KM388_07460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_07460 PF18698 Histidine kinase sensor domain KM388_07465 PF01923 Cobalamin adenosyltransferase KM388_07480 PF12822 ECF transporter, substrate-specific component KM388_07490 PF14493 Helix-turn-helix domain KM388_07495 PF00270 DEAD/DEAH box helicase KM388_07495 PF00271 Helicase conserved C-terminal domain KM388_07500 PF02517 CPBP intramembrane metalloprotease KM388_07515 PF02310 B12 binding domain KM388_07515 PF02607 B12 binding domain KM388_07515 PF13411 MerR HTH family regulatory protein KM388_07520 PF05389 Negative regulator of genetic competence (MecA) KM388_07525 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KM388_07525 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KM388_07550 PF00710 Asparaginase, N-terminal KM388_07550 PF17763 Glutaminase/Asparaginase C-terminal domain KM388_07560 PF02224 Cytidylate kinase KM388_07565 PF00575 S1 RNA binding domain KM388_07570 PF01070 FMN-dependent dehydrogenase KM388_07575 PF14140 YpzI-like protein KM388_07585 PF14045 YIEGIA protein KM388_07595 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KM388_07595 PF01926 50S ribosome-binding GTPase KM388_07600 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KM388_07600 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KM388_07610 PF10966 Protein of unknown function (DUF2768) KM388_07620 PF09547 Stage IV sporulation protein A (spore_IV_A) KM388_07625 PF00216 Bacterial DNA-binding protein KM388_07630 PF01227 GTP cyclohydrolase I KM388_07635 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 KM388_07640 PF01209 ubiE/COQ5 methyltransferase family KM388_07645 PF00348 Polyprenyl synthetase KM388_07650 PF00334 Nucleoside diphosphate kinase KM388_07655 PF01264 Chorismate synthase KM388_07660 PF01761 3-dehydroquinate synthase KM388_07665 PF00155 Aminotransferase class I and II KM388_07675 PF08858 IDEAL domain KM388_07675 PF08864 UPF0302 domain KM388_07680 PF10673 Protein of unknown function (DUF2487) KM388_07685 PF00355 Rieske [2Fe-2S] domain KM388_07690 PF00033 Cytochrome b/b6/petB KM388_07695 PF00032 Cytochrome b(C-terminal)/b6/petD KM388_07695 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KM388_07700 PF07187 Protein of unknown function (DUF1405) KM388_07710 PF09577 Sporulation protein YpjB (SpoYpjB) KM388_07715 PF04298 Putative neutral zinc metallopeptidase KM388_07725 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_07725 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_07730 PF03819 MazG nucleotide pyrophosphohydrolase domain KM388_07735 PF05173 Dihydrodipicolinate reductase, C-terminus KM388_07735 PF01113 Dihydrodipicolinate reductase, N-terminus KM388_07740 PF02142 MGS-like domain KM388_07745 PF02585 GlcNAc-PI de-N-acetylase KM388_07750 PF13439 Glycosyltransferase Family 4 KM388_07750 PF00534 Glycosyl transferases group 1 KM388_07755 PF01743 Poly A polymerase head domain KM388_07755 PF13735 tRNA nucleotidyltransferase domain 2 putative KM388_07755 PF12627 Probable RNA and SrmB- binding site of polymerase A KM388_07760 PF08279 HTH domain KM388_07760 PF02237 Biotin protein ligase C terminal domain KM388_07760 PF03099 Biotin/lipoate A/B protein ligase family KM388_07770 PF02548 Ketopantoate hydroxymethyltransferase KM388_07775 PF02569 Pantoate-beta-alanine ligase KM388_07780 PF02261 Aspartate decarboxylase KM388_07790 PF14084 Protein of unknown function (DUF4264) KM388_07800 PF00155 Aminotransferase class I and II KM388_07805 PF07261 Replication initiation and membrane attachment KM388_07810 PF00730 HhH-GPD superfamily base excision DNA repair protein KM388_07810 PF00633 Helix-hairpin-helix motif KM388_07810 PF10576 Iron-sulfur binding domain of endonuclease III KM388_07820 PF00905 Penicillin binding protein transpeptidase domain KM388_07820 PF00912 Transglycosylase KM388_07825 PF03838 Recombination protein U KM388_07830 PF10720 Protein of unknown function (DUF2515) KM388_07865 PF06908 YspA SLOG family KM388_07870 PF05103 DivIVA protein KM388_07880 PF02926 THUMP domain KM388_07880 PF01170 Putative RNA methylase family UPF0020 KM388_07890 PF13307 Helicase C-terminal domain KM388_07895 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KM388_07905 PF01636 Phosphotransferase enzyme family KM388_07910 PF00557 Metallopeptidase family M24 KM388_07915 PF00156 Phosphoribosyl transferase domain KM388_07920 PF00860 Permease family KM388_07925 PF04235 Protein of unknown function (DUF418) KM388_07930 PF00350 Dynamin family KM388_07940 PF00583 Acetyltransferase (GNAT) family KM388_07945 PF10752 Protein of unknown function (DUF2533) KM388_07950 PF00581 Rhodanese-like domain KM388_07985 PF00689 Cation transporting ATPase, C-terminus KM388_07985 PF00690 Cation transporter/ATPase, N-terminus KM388_07990 PF01367 5'-3' exonuclease, C-terminal SAM fold KM388_07990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KM388_08015 PF02397 Bacterial sugar transferase KM388_08030 PF00535 Glycosyl transferase family 2 KM388_08050 PF18014 Acetyltransferase (GNAT) domain KM388_08050 PF13673 Acetyltransferase (GNAT) domain KM388_08070 PF13456 Reverse transcriptase-like KM388_08075 PF01263 Aldose 1-epimerase KM388_08100 PF00313 'Cold-shock' DNA-binding domain KM388_08110 PF01810 LysE type translocator KM388_08125 PF04341 Protein of unknown function, DUF485 KM388_08130 PF00474 Sodium:solute symporter family KM388_08135 PF00202 Aminotransferase class-III KM388_08145 PF00999 Sodium/hydrogen exchanger family KM388_08150 PF17770 Ribonuclease J C-terminal domain KM388_08150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KM388_08150 PF00753 Metallo-beta-lactamase superfamily KM388_08155 PF06445 GyrI-like small molecule binding domain KM388_08155 PF13411 MerR HTH family regulatory protein KM388_08165 PF04239 Protein of unknown function (DUF421) KM388_08170 PF02698 DUF218 domain KM388_08180 PF00881 Nitroreductase family KM388_08225 PF17209 Hfq protein KM388_08235 PF01618 MotA/TolQ/ExbB proton channel family KM388_08240 PF13677 Membrane MotB of proton-channel complex MotA/MotB KM388_08240 PF00691 OmpA family KM388_08245 PF00072 Response regulator receiver domain KM388_08250 PF07194 P2 response regulator binding domain KM388_08250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_08250 PF01627 Hpt domain KM388_08250 PF01584 CheW-like domain KM388_08250 PF02895 Signal transducing histidine kinase, homodimeric domain KM388_08255 PF01584 CheW-like domain KM388_08255 PF02895 Signal transducing histidine kinase, homodimeric domain KM388_08255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_08255 PF01627 Hpt domain KM388_08255 PF07194 P2 response regulator binding domain KM388_08260 PF04509 CheC-like family KM388_08260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KM388_08275 PF01739 CheR methyltransferase, SAM binding domain KM388_08275 PF03705 CheR methyltransferase, all-alpha domain KM388_08295 PF00460 Flagella basal body rod protein KM388_08295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM388_08320 PF00460 Flagella basal body rod protein KM388_08325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM388_08325 PF00460 Flagella basal body rod protein KM388_08330 PF02049 Flagellar hook-basal body complex protein FliE KM388_08340 PF01706 FliG C-terminal domain KM388_08340 PF14841 FliG middle domain KM388_08340 PF14842 FliG N-terminal domain KM388_08350 PF18269 T3SS EscN ATPase C-terminal domain KM388_08350 PF02874 ATP synthase alpha/beta family, beta-barrel domain KM388_08350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM388_08375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM388_08375 PF00460 Flagella basal body rod protein KM388_08375 PF07559 Flagellar basal body protein FlaE KM388_08390 PF00072 Response regulator receiver domain KM388_08390 PF01584 CheW-like domain KM388_08395 PF12181 DNA binding domain of the motility gene repressor (MogR) KM388_08400 PF00535 Glycosyl transferase family 2 KM388_08435 PF00700 Bacterial flagellin C-terminal helical region KM388_08435 PF00669 Bacterial flagellin N-terminal helical region KM388_08440 PF01464 Transglycosylase SLT domain KM388_08455 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KM388_08455 PF04509 CheC-like family KM388_08465 PF00813 FliP family KM388_08470 PF01313 Bacterial export proteins, family 3 KM388_08480 PF01312 FlhB HrpN YscU SpaS Family KM388_08485 PF00771 FHIPEP family KM388_08490 PF00448 SRP54-type protein, GTPase domain KM388_08495 PF00460 Flagella basal body rod protein KM388_08495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KM388_08500 PF02272 DHHA1 domain KM388_08500 PF01411 tRNA synthetases class II (A) KM388_08500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM388_08525 PF17932 Tetracyclin repressor-like, C-terminal domain KM388_08525 PF00440 Bacterial regulatory proteins, tetR family KM388_08530 PF17329 Family of unknown function (DUF5367) KM388_08545 PF03992 Antibiotic biosynthesis monooxygenase KM388_08550 PF08141 Small acid-soluble spore protein H family KM388_08575 PF00005 ABC transporter KM388_08575 PF08402 TOBE domain KM388_08585 PF00528 Binding-protein-dependent transport system inner membrane component KM388_08590 PF00753 Metallo-beta-lactamase superfamily KM388_08590 PF12706 Beta-lactamase superfamily domain KM388_08600 PF10787 Uncharacterised protein from bacillus cereus group KM388_08615 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_08615 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_08655 PF00733 Asparagine synthase KM388_08655 PF13537 Glutamine amidotransferase domain KM388_08675 PF01545 Cation efflux family KM388_08675 PF16916 Dimerisation domain of Zinc Transporter KM388_08685 PF07729 FCD domain KM388_08685 PF00392 Bacterial regulatory proteins, gntR family KM388_08690 PF00892 EamA-like transporter family KM388_08695 PF07683 Cobalamin synthesis protein cobW C-terminal domain KM388_08695 PF02492 CobW/HypB/UreG, nucleotide-binding domain KM388_08700 PF03773 Predicted permease KM388_08710 PF00535 Glycosyl transferase family 2 KM388_08715 PF03553 Na+/H+ antiporter family KM388_08720 PF00206 Lyase KM388_08720 PF10415 Fumarase C C-terminus KM388_08745 PF03575 Peptidase family S51 KM388_08765 PF02683 Cytochrome C biogenesis protein transmembrane region KM388_08770 PF00578 AhpC/TSA family KM388_08790 PF00291 Pyridoxal-phosphate dependent enzyme KM388_08795 PF04286 Protein of unknown function (DUF445) KM388_08820 PF00196 Bacterial regulatory proteins, luxR family KM388_08820 PF00072 Response regulator receiver domain KM388_08825 PF07730 Histidine kinase KM388_08825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_08825 PF13185 GAF domain KM388_08825 PF13492 GAF domain KM388_08830 PF00005 ABC transporter KM388_08845 PF13091 PLD-like domain KM388_08850 PF00696 Amino acid kinase family KM388_08855 PF00375 Sodium:dicarboxylate symporter family KM388_08860 PF00206 Lyase KM388_08860 PF10415 Fumarase C C-terminus KM388_08865 PF03949 Malic enzyme, NAD binding domain KM388_08865 PF00390 Malic enzyme, N-terminal domain KM388_08870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_08875 PF00072 Response regulator receiver domain KM388_08875 PF08664 YcbB domain KM388_08880 PF00176 SNF2 family N-terminal domain KM388_08880 PF00271 Helicase conserved C-terminal domain KM388_08880 PF04434 SWIM zinc finger KM388_08895 PF03590 Aspartate-ammonia ligase KM388_08915 PF13840 ACT domain KM388_08915 PF00696 Amino acid kinase family KM388_08925 PF13761 Domain of unknown function (DUF4166) KM388_08930 PF14158 YndJ-like protein KM388_08940 PF13205 Bacterial Ig-like domain KM388_08940 PF02368 Bacterial Ig-like domain (group 2) KM388_08940 PF00395 S-layer homology domain KM388_08950 PF07690 Major Facilitator Superfamily KM388_08965 PF02554 Carbon starvation protein CstA KM388_08970 PF03976 Polyphosphate kinase 2 (PPK2) KM388_08975 PF07690 Major Facilitator Superfamily KM388_08980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM388_08980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM388_08990 PF16360 GTP-binding GTPase Middle Region KM388_08990 PF13167 GTP-binding GTPase N-terminal KM388_08990 PF01926 50S ribosome-binding GTPase KM388_09020 PF01943 Polysaccharide biosynthesis protein KM388_09020 PF14667 Polysaccharide biosynthesis C-terminal domain KM388_09025 PF00209 Sodium:neurotransmitter symporter family KM388_09030 PF03422 Carbohydrate binding module (family 6) KM388_09030 PF00457 Glycosyl hydrolases family 11 KM388_09030 PF01522 Polysaccharide deacetylase KM388_09040 PF04239 Protein of unknown function (DUF421) KM388_09055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM388_09055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KM388_09070 PF01625 Peptide methionine sulfoxide reductase KM388_09080 PF01063 Amino-transferase class IV KM388_09085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM388_09085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM388_09085 PF00205 Thiamine pyrophosphate enzyme, central domain KM388_09090 PF10369 Small subunit of acetolactate synthase KM388_09095 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KM388_09095 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KM388_09100 PF00920 Dehydratase family KM388_09105 PF00291 Pyridoxal-phosphate dependent enzyme KM388_09105 PF00585 C-terminal regulatory domain of Threonine dehydratase KM388_09135 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KM388_09145 PF00072 Response regulator receiver domain KM388_09145 PF04397 LytTr DNA-binding domain KM388_09150 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KM388_09150 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KM388_09165 PF01979 Amidohydrolase family KM388_09170 PF13026 Protein of unknown function (DUF3887) KM388_09170 PF12146 Serine aminopeptidase, S33 KM388_09175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_09200 PF04055 Radical SAM superfamily KM388_09200 PF13186 Iron-sulfur cluster-binding domain KM388_09205 PF13302 Acetyltransferase (GNAT) domain KM388_09210 PF00072 Response regulator receiver domain KM388_09210 PF00486 Transcriptional regulatory protein, C terminal KM388_09225 PF01566 Natural resistance-associated macrophage protein KM388_09230 PF12368 Rhodanase C-terminal KM388_09230 PF00581 Rhodanese-like domain KM388_09230 PF17773 UPF0176 acylphosphatase like domain KM388_09240 PF02558 Ketopantoate reductase PanE/ApbA KM388_09240 PF08546 Ketopantoate reductase PanE/ApbA C terminal KM388_09255 PF05791 Bacillus haemolytic enterotoxin (HBL) KM388_09270 PF04198 Putative sugar-binding domain KM388_09275 PF01791 DeoC/LacD family aldolase KM388_09280 PF07662 Na+ dependent nucleoside transporter C-terminus KM388_09280 PF01773 Na+ dependent nucleoside transporter N-terminus KM388_09285 PF00591 Glycosyl transferase family, a/b domain KM388_09285 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KM388_09285 PF02885 Glycosyl transferase family, helical bundle domain KM388_09290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM388_09300 PF05979 Bacterial protein of unknown function (DUF896) KM388_09320 PF05195 Aminopeptidase P, N-terminal domain KM388_09320 PF00557 Metallopeptidase family M24 KM388_09325 PF07731 Multicopper oxidase KM388_09325 PF07732 Multicopper oxidase KM388_09330 PF01551 Peptidase family M23 KM388_09340 PF01131 DNA topoisomerase KM388_09340 PF01751 Toprim domain KM388_09340 PF13342 C-terminal repeat of topoisomerase KM388_09340 PF01396 Topoisomerase DNA binding C4 zinc finger KM388_09355 PF02525 Flavodoxin-like fold KM388_09370 PF05425 Copper resistance protein D KM388_09370 PF04234 CopC domain KM388_09370 PF13115 YtkA-like KM388_09375 PF07987 Domain of unkown function (DUF1775) KM388_09385 PF00892 EamA-like transporter family KM388_09390 PF03466 LysR substrate binding domain KM388_09390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_09395 PF02082 Transcriptional regulator KM388_09400 PF01323 DSBA-like thioredoxin domain KM388_09405 PF00881 Nitroreductase family KM388_09410 PF01425 Amidase KM388_09415 PF01594 AI-2E family transporter KM388_09420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM388_09420 PF00056 lactate/malate dehydrogenase, NAD binding domain KM388_09425 PF01593 Flavin containing amine oxidoreductase KM388_09430 PF02492 CobW/HypB/UreG, nucleotide-binding domain KM388_09430 PF07683 Cobalamin synthesis protein cobW C-terminal domain KM388_09445 PF00501 AMP-binding enzyme KM388_09445 PF13193 AMP-binding enzyme C-terminal domain KM388_09450 PF01575 MaoC like domain KM388_09455 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM388_09455 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM388_09465 PF12399 Branched-chain amino acid ATP-binding cassette transporter KM388_09465 PF00005 ABC transporter KM388_09470 PF00005 ABC transporter KM388_09475 PF02653 Branched-chain amino acid transport system / permease component KM388_09485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_09485 PF03466 LysR substrate binding domain KM388_09495 PF14552 Tautomerase enzyme KM388_09505 PF01047 MarR family KM388_09515 PF01654 Cytochrome bd terminal oxidase subunit I KM388_09520 PF02322 Cytochrome bd terminal oxidase subunit II KM388_09525 PF00664 ABC transporter transmembrane region KM388_09525 PF00005 ABC transporter KM388_09530 PF00664 ABC transporter transmembrane region KM388_09530 PF00005 ABC transporter KM388_09545 PF02016 LD-carboxypeptidase N-terminal domain KM388_09545 PF17676 LD-carboxypeptidase C-terminal domain KM388_09550 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_09550 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_09565 PF01476 LysM domain KM388_09565 PF00877 NlpC/P60 family KM388_09580 PF00486 Transcriptional regulatory protein, C terminal KM388_09580 PF00072 Response regulator receiver domain KM388_09595 PF00106 short chain dehydrogenase KM388_09605 PF04439 Streptomycin adenylyltransferase KM388_09610 PF01522 Polysaccharide deacetylase KM388_09630 PF03447 Homoserine dehydrogenase, NAD binding domain KM388_09630 PF00742 Homoserine dehydrogenase KM388_09630 PF01842 ACT domain KM388_09635 PF00291 Pyridoxal-phosphate dependent enzyme KM388_09640 PF00288 GHMP kinases N terminal domain KM388_09640 PF08544 GHMP kinases C terminal KM388_09655 PF03816 Cell envelope-related transcriptional attenuator domain KM388_09665 PF00486 Transcriptional regulatory protein, C terminal KM388_09665 PF00072 Response regulator receiver domain KM388_09670 PF00989 PAS fold KM388_09670 PF00512 His Kinase A (phospho-acceptor) domain KM388_09670 PF16736 Single Cache-like KM388_09670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_09675 PF01522 Polysaccharide deacetylase KM388_09685 PF02308 MgtC family KM388_09690 PF00583 Acetyltransferase (GNAT) family KM388_09695 PF06276 Ferric iron reductase FhuF-like transporter KM388_09695 PF04183 IucA / IucC family KM388_09700 PF06276 Ferric iron reductase FhuF-like transporter KM388_09700 PF04183 IucA / IucC family KM388_09705 PF13193 AMP-binding enzyme C-terminal domain KM388_09705 PF00501 AMP-binding enzyme KM388_09720 PF01261 Xylose isomerase-like TIM barrel KM388_09725 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM388_09730 PF07690 Major Facilitator Superfamily KM388_09735 PF01810 LysE type translocator KM388_09745 PF01734 Patatin-like phospholipase KM388_09770 PF13344 Haloacid dehalogenase-like hydrolase KM388_09770 PF00293 NUDIX domain KM388_09775 PF02540 NAD synthase KM388_09780 PF02687 FtsX-like permease family KM388_09785 PF18277 AbrB C-terminal domain KM388_09785 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KM388_09790 PF00082 Subtilase family KM388_09795 PF01022 Bacterial regulatory protein, arsR family KM388_09800 PF00248 Aldo/keto reductase family KM388_09805 PF07690 Major Facilitator Superfamily KM388_09825 PF03193 RsgA GTPase KM388_09830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_09830 PF02743 Cache domain KM388_09830 PF00672 HAMP domain KM388_09850 PF00210 Ferritin-like domain KM388_09865 PF00296 Luciferase-like monooxygenase KM388_09875 PF01593 Flavin containing amine oxidoreductase KM388_09885 PF00248 Aldo/keto reductase family KM388_09890 PF02492 CobW/HypB/UreG, nucleotide-binding domain KM388_09890 PF07683 Cobalamin synthesis protein cobW C-terminal domain KM388_09895 PF00583 Acetyltransferase (GNAT) family KM388_09950 PF01297 Zinc-uptake complex component A periplasmic KM388_09950 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment KM388_09960 PF13460 NAD(P)H-binding KM388_09965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KM388_09970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KM388_09970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KM388_09980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_09985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_09995 PF00300 Histidine phosphatase superfamily (branch 1) KM388_10005 PF08757 CotH kinase protein KM388_10010 PF00293 NUDIX domain KM388_10015 PF09335 SNARE associated Golgi protein KM388_10020 PF14667 Polysaccharide biosynthesis C-terminal domain KM388_10020 PF01943 Polysaccharide biosynthesis protein KM388_10030 PF03773 Predicted permease KM388_10035 PF09323 Domain of unknown function (DUF1980) KM388_10040 PF03061 Thioesterase superfamily KM388_10050 PF13396 Phospholipase_D-nuclease N-terminal KM388_10050 PF13091 PLD-like domain KM388_10065 PF13460 NAD(P)H-binding KM388_10070 PF04306 Protein of unknown function (DUF456) KM388_10075 PF00571 CBS domain KM388_10075 PF03471 Transporter associated domain KM388_10075 PF01595 Cyclin M transmembrane N-terminal domain KM388_10090 PF05525 Branched-chain amino acid transport protein KM388_10095 PF01588 Putative tRNA binding domain KM388_10115 PF07454 Stage II sporulation protein P (SpoIIP) KM388_10125 PF02557 D-alanyl-D-alanine carboxypeptidase KM388_10135 PF01425 Amidase KM388_10140 PF07690 Major Facilitator Superfamily KM388_10150 PF01145 SPFH domain / Band 7 family KM388_10155 PF00300 Histidine phosphatase superfamily (branch 1) KM388_10170 PF01168 Alanine racemase, N-terminal domain KM388_10170 PF00842 Alanine racemase, C-terminal domain KM388_10175 PF13847 Methyltransferase domain KM388_10190 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KM388_10195 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_10195 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_10200 PF00392 Bacterial regulatory proteins, gntR family KM388_10200 PF00155 Aminotransferase class I and II KM388_10225 PF00583 Acetyltransferase (GNAT) family KM388_10275 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KM388_10305 PF01268 Formate--tetrahydrofolate ligase KM388_10315 PF00271 Helicase conserved C-terminal domain KM388_10315 PF00270 DEAD/DEAH box helicase KM388_10325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_10335 PF00107 Zinc-binding dehydrogenase KM388_10335 PF08240 Alcohol dehydrogenase GroES-like domain KM388_10340 PF04542 Sigma-70 region 2 KM388_10340 PF08281 Sigma-70, region 4 KM388_10365 PF00255 Glutathione peroxidase KM388_10370 PF11992 Domain of unknown function (DUF3488) KM388_10370 PF13559 Domain of unknown function (DUF4129) KM388_10370 PF01841 Transglutaminase-like superfamily KM388_10375 PF01882 Protein of unknown function DUF58 KM388_10380 PF17863 AAA lid domain KM388_10380 PF07726 ATPase family associated with various cellular activities (AAA) KM388_10395 PF14710 Respiratory nitrate reductase alpha N-terminal KM388_10395 PF01568 Molydopterin dinucleotide binding domain KM388_10395 PF00384 Molybdopterin oxidoreductase KM388_10400 PF13247 4Fe-4S dicluster domain KM388_10400 PF14711 Respiratory nitrate reductase beta C-terminal KM388_10405 PF02613 Nitrate reductase delta subunit KM388_10410 PF02665 Nitrate reductase gamma subunit KM388_10415 PF00155 Aminotransferase class I and II KM388_10415 PF00392 Bacterial regulatory proteins, gntR family KM388_10420 PF00005 ABC transporter KM388_10430 PF00027 Cyclic nucleotide-binding domain KM388_10430 PF00325 Bacterial regulatory proteins, crp family KM388_10435 PF06463 Molybdenum Cofactor Synthesis C KM388_10435 PF04055 Radical SAM superfamily KM388_10440 PF00899 ThiF family KM388_10445 PF00994 Probable molybdopterin binding domain KM388_10445 PF03453 MoeA N-terminal region (domain I and II) KM388_10445 PF03454 MoeA C-terminal region (domain IV) KM388_10450 PF02391 MoaE protein KM388_10460 PF07690 Major Facilitator Superfamily KM388_10480 PF01903 CbiX KM388_10485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KM388_10490 PF00355 Rieske [2Fe-2S] domain KM388_10495 PF04324 BFD-like [2Fe-2S] binding domain KM388_10495 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KM388_10495 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KM388_10495 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_10495 PF18267 Rubredoxin NAD+ reductase C-terminal domain KM388_10500 PF04405 Domain of Unknown function (DUF542) KM388_10500 PF01814 Hemerythrin HHE cation binding domain KM388_10535 PF04232 Stage V sporulation protein S (SpoVS) KM388_10550 PF01510 N-acetylmuramoyl-L-alanine amidase KM388_10565 PF01966 HD domain KM388_10570 PF00005 ABC transporter KM388_10570 PF16326 ABC transporter C-terminal domain KM388_10570 PF12848 ABC transporter KM388_10585 PF00436 Single-strand binding protein family KM388_10590 PF00440 Bacterial regulatory proteins, tetR family KM388_10600 PF01494 FAD binding domain KM388_10610 PF13769 Virulence factor KM388_10610 PF08712 Scaffold protein Nfu/NifU N terminal KM388_10620 PF06491 Disulphide isomerase KM388_10625 PF04445 Putative SAM-dependent methyltransferase KM388_10630 PF05746 DALR anticodon binding domain KM388_10630 PF00750 tRNA synthetases class I (R) KM388_10630 PF03485 Arginyl tRNA synthetase N terminal domain KM388_10655 PF00133 tRNA synthetases class I (I, L, M and V) KM388_10655 PF08264 Anticodon-binding domain of tRNA KM388_10675 PF00152 tRNA synthetases class II (D, K and N) KM388_10675 PF01336 OB-fold nucleic acid binding domain KM388_10695 PF12538 DNA transporter KM388_10695 PF01580 FtsK/SpoIIIE family KM388_10765 PF02595 Glycerate kinase family KM388_10770 PF00939 Sodium:sulfate symporter transmembrane region KM388_10775 PF00072 Response regulator receiver domain KM388_10775 PF00486 Transcriptional regulatory protein, C terminal KM388_10780 PF00512 His Kinase A (phospho-acceptor) domain KM388_10780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_10780 PF00672 HAMP domain KM388_10795 PF00209 Sodium:neurotransmitter symporter family KM388_10810 PF10997 Alternate to MurJ KM388_10815 PF13419 Haloacid dehalogenase-like hydrolase KM388_10825 PF00465 Iron-containing alcohol dehydrogenase KM388_10830 PF01177 Asp/Glu/Hydantoin racemase KM388_10835 PF01980 tRNA-methyltransferase O KM388_10840 PF00583 Acetyltransferase (GNAT) family KM388_10855 PF00005 ABC transporter KM388_10865 PF14005 YpjP-like protein KM388_10870 PF13419 Haloacid dehalogenase-like hydrolase KM388_10890 PF00144 Beta-lactamase KM388_10890 PF07930 D-aminopeptidase, domain B KM388_10895 PF00303 Thymidylate synthase KM388_10900 PF00186 Dihydrofolate reductase KM388_10905 PF05223 NTF2-like N-terminal transpeptidase domain KM388_10905 PF00905 Penicillin binding protein transpeptidase domain KM388_10905 PF03717 Penicillin-binding Protein dimerisation domain KM388_10910 PF02525 Flavodoxin-like fold KM388_10915 PF01553 Acyltransferase KM388_10920 PF03006 Haemolysin-III related KM388_10925 PF02416 mttA/Hcf106 family KM388_10930 PF00902 Sec-independent protein translocase protein (TatC) KM388_10940 PF02645 Uncharacterised protein, DegV family COG1307 KM388_10950 PF02630 SCO1/SenC KM388_10955 PF00011 Hsp20/alpha crystallin family KM388_10960 PF13537 Glutamine amidotransferase domain KM388_10960 PF00733 Asparagine synthase KM388_10975 PF01497 Periplasmic binding protein KM388_10980 PF01063 Amino-transferase class IV KM388_10985 PF00881 Nitroreductase family KM388_11005 PF00293 NUDIX domain KM388_11010 PF00011 Hsp20/alpha crystallin family KM388_11015 PF00924 Mechanosensitive ion channel KM388_11020 PF13185 GAF domain KM388_11020 PF07730 Histidine kinase KM388_11025 PF00072 Response regulator receiver domain KM388_11025 PF00196 Bacterial regulatory proteins, luxR family KM388_11035 PF00107 Zinc-binding dehydrogenase KM388_11035 PF08240 Alcohol dehydrogenase GroES-like domain KM388_11050 PF00144 Beta-lactamase KM388_11060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM388_11060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM388_11065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM388_11065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM388_11080 PF03358 NADPH-dependent FMN reductase KM388_11095 PF00571 CBS domain KM388_11095 PF00005 ABC transporter KM388_11100 PF00528 Binding-protein-dependent transport system inner membrane component KM388_11105 PF13520 Amino acid permease KM388_11135 PF00571 CBS domain KM388_11135 PF01595 Cyclin M transmembrane N-terminal domain KM388_11135 PF03471 Transporter associated domain KM388_11140 PF00171 Aldehyde dehydrogenase family KM388_11145 PF07997 Protein of unknown function (DUF1694) KM388_11150 PF09385 Histidine kinase N terminal KM388_11160 PF00202 Aminotransferase class-III KM388_11165 PF01144 Coenzyme A transferase KM388_11170 PF01144 Coenzyme A transferase KM388_11175 PF07687 Peptidase dimerisation domain KM388_11175 PF01546 Peptidase family M20/M25/M40 KM388_11180 PF00583 Acetyltransferase (GNAT) family KM388_11185 PF02954 Bacterial regulatory protein, Fis family KM388_11185 PF00158 Sigma-54 interaction domain KM388_11185 PF13426 PAS domain KM388_11190 PF12544 Lysine-2,3-aminomutase KM388_11195 PF14122 YokU-like protein, putative antitoxin KM388_11200 PF06855 YozE SAM-like fold KM388_11215 PF14162 YozD-like protein KM388_11230 PF07070 SpoOM protein KM388_11235 PF01569 PAP2 superfamily KM388_11240 PF16916 Dimerisation domain of Zinc Transporter KM388_11240 PF01545 Cation efflux family KM388_11245 PF00085 Thioredoxin KM388_11260 PF04740 LXG domain of WXG superfamily KM388_11260 PF14436 Bacterial EndoU nuclease KM388_11265 PF00150 Cellulase (glycosyl hydrolase family 5) KM388_11265 PF03424 Carbohydrate binding domain (family 17/28) KM388_11265 PF00395 S-layer homology domain KM388_11275 PF04471 Restriction endonuclease KM388_11385 PF10676 Spore germination protein gerPA/gerPF KM388_11405 PF00905 Penicillin binding protein transpeptidase domain KM388_11405 PF00912 Transglycosylase KM388_11410 PF07690 Major Facilitator Superfamily KM388_11415 PF01521 Iron-sulphur cluster biosynthesis KM388_11420 PF00285 Citrate synthase, C-terminal domain KM388_11425 PF03972 MmgE/PrpD family KM388_11435 PF02770 Acyl-CoA dehydrogenase, middle domain KM388_11435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM388_11435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM388_11440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KM388_11440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM388_11445 PF00171 Aldehyde dehydrogenase family KM388_11450 PF01810 LysE type translocator KM388_11455 PF00378 Enoyl-CoA hydratase/isomerase KM388_11465 PF10763 Protein of unknown function (DUF2584) KM388_11470 PF12320 Type 5 capsule protein repressor C-terminal domain KM388_11470 PF00149 Calcineurin-like phosphoesterase KM388_11475 PF13476 AAA domain KM388_11485 PF01022 Bacterial regulatory protein, arsR family KM388_11495 PF07690 Major Facilitator Superfamily KM388_11500 PF00106 short chain dehydrogenase KM388_11505 PF00425 chorismate binding enzyme KM388_11510 PF00501 AMP-binding enzyme KM388_11510 PF13193 AMP-binding enzyme C-terminal domain KM388_11515 PF00857 Isochorismatase family KM388_11515 PF00550 Phosphopantetheine attachment site KM388_11525 PF03621 MbtH-like protein KM388_11530 PF07690 Major Facilitator Superfamily KM388_11545 PF00216 Bacterial DNA-binding protein KM388_11555 PF05163 DinB family KM388_11560 PF00082 Subtilase family KM388_11580 PF16291 Domain of unknown function (DUF4937 KM388_11585 PF00849 RNA pseudouridylate synthase KM388_11585 PF01479 S4 domain KM388_11590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM388_11590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM388_11590 PF02824 TGS domain KM388_11590 PF03129 Anticodon binding domain KM388_11605 PF12146 Serine aminopeptidase, S33 KM388_11610 PF07690 Major Facilitator Superfamily KM388_11635 PF13649 Methyltransferase domain KM388_11680 PF16123 Hydroxyacylglutathione hydrolase C-terminus KM388_11680 PF00753 Metallo-beta-lactamase superfamily KM388_11690 PF03176 MMPL family KM388_11700 PF00302 Chloramphenicol acetyltransferase KM388_11715 PF00583 Acetyltransferase (GNAT) family KM388_11745 PF01593 Flavin containing amine oxidoreductase KM388_11755 PF13302 Acetyltransferase (GNAT) domain KM388_11765 PF00313 'Cold-shock' DNA-binding domain KM388_11825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_11825 PF03466 LysR substrate binding domain KM388_11830 PF02774 Semialdehyde dehydrogenase, dimerisation domain KM388_11830 PF01118 Semialdehyde dehydrogenase, NAD binding domain KM388_11845 PF03466 LysR substrate binding domain KM388_11845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_11850 PF03475 3-alpha domain KM388_11850 PF03473 MOSC domain KM388_11865 PF00664 ABC transporter transmembrane region KM388_11865 PF00005 ABC transporter KM388_11870 PF00664 ABC transporter transmembrane region KM388_11870 PF00005 ABC transporter KM388_11885 PF01810 LysE type translocator KM388_11890 PF07883 Cupin domain KM388_11890 PF01381 Helix-turn-helix KM388_11915 PF00890 FAD binding domain KM388_11920 PF04542 Sigma-70 region 2 KM388_11920 PF08281 Sigma-70, region 4 KM388_11920 PF12680 SnoaL-like domain KM388_11945 PF02638 Glycosyl hydrolase-like 10 KM388_11955 PF02378 Phosphotransferase system, EIIC KM388_11965 PF03702 Anhydro-N-acetylmuramic acid kinase KM388_11970 PF01869 BadF/BadG/BcrA/BcrD ATPase family KM388_11975 PF02660 Glycerol-3-phosphate acyltransferase KM388_11980 PF00266 Aminotransferase class-V KM388_11985 PF00291 Pyridoxal-phosphate dependent enzyme KM388_12000 PF16123 Hydroxyacylglutathione hydrolase C-terminus KM388_12000 PF00753 Metallo-beta-lactamase superfamily KM388_12015 PF00270 DEAD/DEAH box helicase KM388_12015 PF00271 Helicase conserved C-terminal domain KM388_12030 PF00440 Bacterial regulatory proteins, tetR family KM388_12030 PF17932 Tetracyclin repressor-like, C-terminal domain KM388_12050 PF00005 ABC transporter KM388_12050 PF02687 FtsX-like permease family KM388_12050 PF12704 MacB-like periplasmic core domain KM388_12055 PF09313 Domain of unknown function (DUF1971) KM388_12055 PF03848 Tellurite resistance protein TehB KM388_12065 PF08241 Methyltransferase domain KM388_12070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM388_12070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM388_12070 PF00205 Thiamine pyrophosphate enzyme, central domain KM388_12075 PF12802 MarR family KM388_12080 PF00300 Histidine phosphatase superfamily (branch 1) KM388_12085 PF14171 Toxin SpoIISA, type II toxin-antitoxin system KM388_12115 PF07687 Peptidase dimerisation domain KM388_12115 PF01546 Peptidase family M20/M25/M40 KM388_12130 PF08281 Sigma-70, region 4 KM388_12130 PF04542 Sigma-70 region 2 KM388_12140 PF03717 Penicillin-binding Protein dimerisation domain KM388_12140 PF00905 Penicillin binding protein transpeptidase domain KM388_12145 PF00905 Penicillin binding protein transpeptidase domain KM388_12145 PF03717 Penicillin-binding Protein dimerisation domain KM388_12155 PF01569 PAP2 superfamily KM388_12160 PF00356 Bacterial regulatory proteins, lacI family KM388_12165 PF07690 Major Facilitator Superfamily KM388_12170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM388_12170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KM388_12175 PF00294 pfkB family carbohydrate kinase KM388_12180 PF00171 Aldehyde dehydrogenase family KM388_12185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM388_12185 PF00205 Thiamine pyrophosphate enzyme, central domain KM388_12185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM388_12195 PF01116 Fructose-bisphosphate aldolase class-II KM388_12215 PF00149 Calcineurin-like phosphoesterase KM388_12215 PF02872 5'-nucleotidase, C-terminal domain KM388_12230 PF01381 Helix-turn-helix KM388_12245 PF02557 D-alanyl-D-alanine carboxypeptidase KM388_12255 PF00395 S-layer homology domain KM388_12255 PF01520 N-acetylmuramoyl-L-alanine amidase KM388_12265 PF00440 Bacterial regulatory proteins, tetR family KM388_12270 PF16326 ABC transporter C-terminal domain KM388_12270 PF00005 ABC transporter KM388_12280 PF00563 EAL domain KM388_12280 PF03707 Bacterial signalling protein N terminal repeat KM388_12280 PF00990 Diguanylate cyclase, GGDEF domain KM388_12285 PF13302 Acetyltransferase (GNAT) domain KM388_12305 PF00581 Rhodanese-like domain KM388_12320 PF00005 ABC transporter KM388_12330 PF00440 Bacterial regulatory proteins, tetR family KM388_12330 PF08359 YsiA-like protein, C-terminal region KM388_12345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM388_12345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM388_12345 PF02770 Acyl-CoA dehydrogenase, middle domain KM388_12350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM388_12350 PF00289 Biotin carboxylase, N-terminal domain KM388_12350 PF02785 Biotin carboxylase C-terminal domain KM388_12355 PF00364 Biotin-requiring enzyme KM388_12360 PF00682 HMGL-like KM388_12365 PF00378 Enoyl-CoA hydratase/isomerase KM388_12370 PF01039 Carboxyl transferase domain KM388_12375 PF00501 AMP-binding enzyme KM388_12375 PF13193 AMP-binding enzyme C-terminal domain KM388_12375 PF16177 Acetyl-coenzyme A synthetase N-terminus KM388_12385 PF00583 Acetyltransferase (GNAT) family KM388_12390 PF00485 Phosphoribulokinase / Uridine kinase family KM388_12400 PF05163 DinB family KM388_12405 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_12405 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_12410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_12410 PF00512 His Kinase A (phospho-acceptor) domain KM388_12415 PF00486 Transcriptional regulatory protein, C terminal KM388_12415 PF00072 Response regulator receiver domain KM388_12420 PF01966 HD domain KM388_12425 PF13021 Domain of unknown function (DUF3885) KM388_12430 PF01048 Phosphorylase superfamily KM388_12470 PF17755 UvrA DNA-binding domain KM388_12470 PF17760 UvrA interaction domain KM388_12470 PF17755 UvrA DNA-binding domain KM388_12470 PF17760 UvrA interaction domain KM388_12485 PF00144 Beta-lactamase KM388_12490 PF09278 MerR, DNA binding KM388_12490 PF00376 MerR family regulatory protein KM388_12495 PF07690 Major Facilitator Superfamily KM388_12510 PF01636 Phosphotransferase enzyme family KM388_12515 PF12833 Helix-turn-helix domain KM388_12530 PF00155 Aminotransferase class I and II KM388_12530 PF00392 Bacterial regulatory proteins, gntR family KM388_12545 PF08240 Alcohol dehydrogenase GroES-like domain KM388_12545 PF00107 Zinc-binding dehydrogenase KM388_12575 PF07486 Cell Wall Hydrolase KM388_12585 PF00072 Response regulator receiver domain KM388_12585 PF00486 Transcriptional regulatory protein, C terminal KM388_12600 PF00005 ABC transporter KM388_12600 PF12848 ABC transporter KM388_12615 PF00005 ABC transporter KM388_12640 PF01842 ACT domain KM388_12640 PF00742 Homoserine dehydrogenase KM388_12640 PF03447 Homoserine dehydrogenase, NAD binding domain KM388_12645 PF00155 Aminotransferase class I and II KM388_12645 PF00392 Bacterial regulatory proteins, gntR family KM388_12650 PF07478 D-ala D-ala ligase C-terminus KM388_12650 PF01820 D-ala D-ala ligase N-terminus KM388_12655 PF03070 TENA/THI-4/PQQC family KM388_12720 PF00067 Cytochrome P450 KM388_12730 PF00132 Bacterial transferase hexapeptide (six repeats) KM388_12735 PF07561 Domain of Unknown Function (DUF1540) KM388_12765 PF13426 PAS domain KM388_12765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_12765 PF00512 His Kinase A (phospho-acceptor) domain KM388_12765 PF00989 PAS fold KM388_12765 PF13188 PAS domain KM388_12770 PF00905 Penicillin binding protein transpeptidase domain KM388_12770 PF03717 Penicillin-binding Protein dimerisation domain KM388_12775 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KM388_12780 PF01177 Asp/Glu/Hydantoin racemase KM388_12785 PF07155 ECF-type riboflavin transporter, S component KM388_12790 PF00005 ABC transporter KM388_12790 PF12558 ATP-binding cassette cobalt transporter KM388_12805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_12805 PF00512 His Kinase A (phospho-acceptor) domain KM388_12815 PF04229 GrpB protein KM388_12820 PF08240 Alcohol dehydrogenase GroES-like domain KM388_12820 PF00107 Zinc-binding dehydrogenase KM388_12825 PF03717 Penicillin-binding Protein dimerisation domain KM388_12825 PF00905 Penicillin binding protein transpeptidase domain KM388_12825 PF03793 PASTA domain KM388_12835 PF11954 Domain of unknown function (DUF3471) KM388_12835 PF00144 Beta-lactamase KM388_12870 PF01965 DJ-1/PfpI family KM388_12885 PF00144 Beta-lactamase KM388_12900 PF07690 Major Facilitator Superfamily KM388_12915 PF03009 Glycerophosphoryl diester phosphodiesterase family KM388_12935 PF00892 EamA-like transporter family KM388_12940 PF01270 Glycosyl hydrolases family 8 KM388_12950 PF13344 Haloacid dehalogenase-like hydrolase KM388_12950 PF00293 NUDIX domain KM388_12960 PF00144 Beta-lactamase KM388_12970 PF07690 Major Facilitator Superfamily KM388_12985 PF09297 NADH pyrophosphatase zinc ribbon domain KM388_12985 PF00293 NUDIX domain KM388_12990 PF02768 DNA polymerase III beta subunit, C-terminal domain KM388_12990 PF00712 DNA polymerase III beta subunit, N-terminal domain KM388_12990 PF02767 DNA polymerase III beta subunit, central domain KM388_12995 PF00293 NUDIX domain KM388_13010 PF12706 Beta-lactamase superfamily domain KM388_13030 PF09234 Domain of unknown function (DUF1963) KM388_13055 PF08000 Bacterial PH domain KM388_13065 PF12867 DinB superfamily KM388_13080 PF02673 Bacitracin resistance protein BacA KM388_13090 PF01541 GIY-YIG catalytic domain KM388_13130 PF01266 FAD dependent oxidoreductase KM388_13155 PF13419 Haloacid dehalogenase-like hydrolase KM388_13170 PF07859 alpha/beta hydrolase fold KM388_13175 PF00282 Pyridoxal-dependent decarboxylase conserved domain KM388_13190 PF03714 Bacterial pullanase-associated domain KM388_13190 PF00128 Alpha amylase, catalytic domain KM388_13190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KM388_13195 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM388_13195 PF03413 Peptidase propeptide and YPEB domain KM388_13195 PF07504 Fungalysin/Thermolysin Propeptide Motif KM388_13195 PF01447 Thermolysin metallopeptidase, catalytic domain KM388_13215 PF00344 SecY translocase KM388_13220 PF11638 DnaA N-terminal domain KM388_13220 PF08299 Bacterial dnaA protein helix-turn-helix KM388_13220 PF00308 Bacterial dnaA protein KM388_13225 PF00892 EamA-like transporter family KM388_13230 PF00155 Aminotransferase class I and II KM388_13230 PF00392 Bacterial regulatory proteins, gntR family KM388_13235 PF00561 alpha/beta hydrolase fold KM388_13260 PF06081 Aromatic acid exporter family member 1 KM388_13275 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KM388_13280 PF03413 Peptidase propeptide and YPEB domain KM388_13280 PF14620 YpeB sporulation KM388_13285 PF07486 Cell Wall Hydrolase KM388_13285 PF01471 Putative peptidoglycan binding domain KM388_13300 PF03301 Tryptophan 2,3-dioxygenase KM388_13305 PF04199 Putative cyclase KM388_13310 PF00266 Aminotransferase class-V KM388_13315 PF00440 Bacterial regulatory proteins, tetR family KM388_13315 PF08359 YsiA-like protein, C-terminal region KM388_13320 PF13344 Haloacid dehalogenase-like hydrolase KM388_13320 PF00293 NUDIX domain KM388_13345 PF01590 GAF domain KM388_13345 PF02954 Bacterial regulatory protein, Fis family KM388_13345 PF00158 Sigma-54 interaction domain KM388_13360 PF13302 Acetyltransferase (GNAT) domain KM388_13365 PF00455 DeoR C terminal sensor domain KM388_13365 PF08220 DeoR-like helix-turn-helix domain KM388_13380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM388_13380 PF00403 Heavy-metal-associated domain KM388_13380 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_13385 PF02082 Transcriptional regulator KM388_13400 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_13400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM388_13405 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM388_13405 PF00364 Biotin-requiring enzyme KM388_13405 PF02817 e3 binding domain KM388_13410 PF02779 Transketolase, pyrimidine binding domain KM388_13410 PF02780 Transketolase, C-terminal domain KM388_13415 PF00676 Dehydrogenase E1 component KM388_13425 PF00106 short chain dehydrogenase KM388_13430 PF13673 Acetyltransferase (GNAT) domain KM388_13430 PF04229 GrpB protein KM388_13460 PF00528 Binding-protein-dependent transport system inner membrane component KM388_13465 PF00571 CBS domain KM388_13465 PF00005 ABC transporter KM388_13470 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KM388_13475 PF00574 Clp protease KM388_13490 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KM388_13495 PF13673 Acetyltransferase (GNAT) domain KM388_13500 PF18416 N-acetylglucosamine binding protein domain 2 KM388_13500 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KM388_13515 PF10990 Protein of unknown function (DUF2809) KM388_13540 PF13567 Domain of unknown function (DUF4131) KM388_13540 PF00753 Metallo-beta-lactamase superfamily KM388_13540 PF03772 Competence protein KM388_13590 PF13538 UvrD-like helicase C-terminal domain KM388_13605 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KM388_13610 PF00270 DEAD/DEAH box helicase KM388_13610 PF00271 Helicase conserved C-terminal domain KM388_13610 PF00570 HRDC domain KM388_13610 PF16124 RecQ zinc-binding KM388_13610 PF09382 RQC domain KM388_13650 PF01368 DHH family KM388_13650 PF02833 DHHA2 domain KM388_13655 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KM388_13655 PF18416 N-acetylglucosamine binding protein domain 2 KM388_13670 PF02627 Carboxymuconolactone decarboxylase family KM388_13675 PF01235 Sodium:alanine symporter family KM388_13680 PF00171 Aldehyde dehydrogenase family KM388_13685 PF00701 Dihydrodipicolinate synthetase family KM388_13690 PF05544 Proline racemase KM388_13695 PF05544 Proline racemase KM388_13700 PF01266 FAD dependent oxidoreductase KM388_13705 PF13188 PAS domain KM388_13705 PF02954 Bacterial regulatory protein, Fis family KM388_13705 PF00158 Sigma-54 interaction domain KM388_13720 PF04324 BFD-like [2Fe-2S] binding domain KM388_13720 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_13735 PF08876 Domain of unknown function (DUF1836) KM388_13740 PF09335 SNARE associated Golgi protein KM388_13755 PF04914 DltD protein KM388_13760 PF00958 GMP synthase C terminal domain KM388_13760 PF13302 Acetyltransferase (GNAT) domain KM388_13760 PF00117 Glutamine amidotransferase class-I KM388_13760 PF03352 Methyladenine glycosylase KM388_13760 PF13673 Acetyltransferase (GNAT) domain KM388_13765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_13770 PF00877 NlpC/P60 family KM388_13770 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain KM388_13775 PF13378 Enolase C-terminal domain-like KM388_13775 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KM388_13795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM388_13820 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KM388_13820 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain KM388_13825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_13825 PF16736 Single Cache-like KM388_13825 PF00989 PAS fold KM388_13825 PF00512 His Kinase A (phospho-acceptor) domain KM388_13830 PF00486 Transcriptional regulatory protein, C terminal KM388_13830 PF00072 Response regulator receiver domain KM388_13850 PF01048 Phosphorylase superfamily KM388_13860 PF03808 Glycosyl transferase WecB/TagA/CpsF family KM388_13865 PF08439 Oligopeptidase F KM388_13865 PF01432 Peptidase family M3 KM388_13880 PF02645 Uncharacterised protein, DegV family COG1307 KM388_13900 PF07690 Major Facilitator Superfamily KM388_13910 PF04519 Polymer-forming cytoskeletal KM388_13915 PF13171 Protein of unknown function (DUF4004) KM388_13920 PF12793 Sugar transport-related sRNA regulator N-term KM388_13920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_13925 PF07690 Major Facilitator Superfamily KM388_13945 PF04226 Transglycosylase associated protein KM388_13950 PF01156 Inosine-uridine preferring nucleoside hydrolase KM388_13960 PF08241 Methyltransferase domain KM388_13995 PF00155 Aminotransferase class I and II KM388_14000 PF07977 FabA-like domain KM388_14005 PF03630 Fumble KM388_14025 PF00005 ABC transporter KM388_14070 PF01594 AI-2E family transporter KM388_14080 PF00296 Luciferase-like monooxygenase KM388_14085 PF00528 Binding-protein-dependent transport system inner membrane component KM388_14090 PF09084 NMT1/THI5 like KM388_14095 PF00005 ABC transporter KM388_14115 PF09297 NADH pyrophosphatase zinc ribbon domain KM388_14115 PF00293 NUDIX domain KM388_14135 PF02522 Aminoglycoside 3-N-acetyltransferase KM388_14160 PF13536 Putative multidrug resistance efflux transporter KM388_14165 PF12867 DinB superfamily KM388_14195 PF01522 Polysaccharide deacetylase KM388_14205 PF03741 Integral membrane protein TerC family KM388_14210 PF00884 Sulfatase KM388_14215 PF00005 ABC transporter KM388_14215 PF12848 ABC transporter KM388_14230 PF16295 Tetracyclin repressor-like, C-terminal domain KM388_14230 PF00440 Bacterial regulatory proteins, tetR family KM388_14240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KM388_14245 PF01842 ACT domain KM388_14245 PF02153 Prephenate dehydrogenase KM388_14250 PF00155 Aminotransferase class I and II KM388_14255 PF01264 Chorismate synthase KM388_14260 PF01817 Chorismate mutase type II KM388_14260 PF00793 DAHP synthetase I family KM388_14280 PF01636 Phosphotransferase enzyme family KM388_14295 PF06725 3D domain KM388_14295 PF01476 LysM domain KM388_14305 PF08281 Sigma-70, region 4 KM388_14305 PF04542 Sigma-70 region 2 KM388_14325 PF06039 Malate:quinone oxidoreductase (Mqo) KM388_14330 PF13407 Periplasmic binding protein domain KM388_14335 PF02653 Branched-chain amino acid transport system / permease component KM388_14340 PF02653 Branched-chain amino acid transport system / permease component KM388_14345 PF00005 ABC transporter KM388_14350 PF00325 Bacterial regulatory proteins, crp family KM388_14350 PF04198 Putative sugar-binding domain KM388_14355 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM388_14355 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM388_14365 PF01791 DeoC/LacD family aldolase KM388_14385 PF03992 Antibiotic biosynthesis monooxygenase KM388_14405 PF07662 Na+ dependent nucleoside transporter C-terminus KM388_14405 PF01773 Na+ dependent nucleoside transporter N-terminus KM388_14410 PF00171 Aldehyde dehydrogenase family KM388_14415 PF00696 Amino acid kinase family KM388_14415 PF01472 PUA domain KM388_14420 PF03807 NADP oxidoreductase coenzyme F420-dependent KM388_14420 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM388_14425 PF01546 Peptidase family M20/M25/M40 KM388_14430 PF01614 Bacterial transcriptional regulator KM388_14430 PF09339 IclR helix-turn-helix domain KM388_14435 PF00324 Amino acid permease KM388_14440 PF01139 tRNA-splicing ligase RtcB KM388_14445 PF00487 Fatty acid desaturase KM388_14450 PF00245 Alkaline phosphatase KM388_14455 PF11188 Protein of unknown function (DUF2975) KM388_14460 PF13443 Cro/C1-type HTH DNA-binding domain KM388_14475 PF10086 YhfC intramembrane metalloprotease KM388_14485 PF00072 Response regulator receiver domain KM388_14485 PF04397 LytTr DNA-binding domain KM388_14495 PF13302 Acetyltransferase (GNAT) domain KM388_14500 PF12681 Glyoxalase-like domain KM388_14520 PF07726 ATPase family associated with various cellular activities (AAA) KM388_14520 PF17863 AAA lid domain KM388_14535 PF07690 Major Facilitator Superfamily KM388_14560 PF00535 Glycosyl transferase family 2 KM388_14570 PF00535 Glycosyl transferase family 2 KM388_14580 PF00202 Aminotransferase class-III KM388_14585 PF06628 Catalase-related immune-responsive KM388_14585 PF00199 Catalase KM388_14595 PF13382 Adenine deaminase C-terminal domain KM388_14595 PF01979 Amidohydrolase family KM388_14600 PF00144 Beta-lactamase KM388_14620 PF17863 AAA lid domain KM388_14620 PF07726 ATPase family associated with various cellular activities (AAA) KM388_14630 PF00881 Nitroreductase family KM388_14635 PF01047 MarR family KM388_14640 PF00679 Elongation factor G C-terminus KM388_14640 PF00009 Elongation factor Tu GTP binding domain KM388_14640 PF14492 Elongation Factor G, domain II KM388_14640 PF03764 Elongation factor G, domain IV KM388_14650 PF00293 NUDIX domain KM388_14670 PF00392 Bacterial regulatory proteins, gntR family KM388_14680 PF00005 ABC transporter KM388_14680 PF12704 MacB-like periplasmic core domain KM388_14680 PF02687 FtsX-like permease family KM388_14705 PF12833 Helix-turn-helix domain KM388_14710 PF00583 Acetyltransferase (GNAT) family KM388_14725 PF00892 EamA-like transporter family KM388_14730 PF00392 Bacterial regulatory proteins, gntR family KM388_14730 PF00155 Aminotransferase class I and II KM388_14735 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KM388_14740 PF13031 Protein of unknown function (DUF3892) KM388_14750 PF00672 HAMP domain KM388_14750 PF00512 His Kinase A (phospho-acceptor) domain KM388_14755 PF00486 Transcriptional regulatory protein, C terminal KM388_14755 PF00072 Response regulator receiver domain KM388_14760 PF00561 alpha/beta hydrolase fold KM388_14790 PF01925 Sulfite exporter TauE/SafE KM388_14795 PF13302 Acetyltransferase (GNAT) domain KM388_14800 PF00324 Amino acid permease KM388_14810 PF08713 DNA alkylation repair enzyme KM388_14815 PF10898 Protein of unknown function (DUF2716) KM388_14835 PF00293 NUDIX domain KM388_14845 PF10502 Signal peptidase, peptidase S26 KM388_14850 PF00905 Penicillin binding protein transpeptidase domain KM388_14850 PF03717 Penicillin-binding Protein dimerisation domain KM388_14860 PF02146 Sir2 family KM388_14885 PF03746 LamB/YcsF family KM388_14890 PF02626 Carboxyltransferase domain, subdomain A and B KM388_14895 PF02682 Carboxyltransferase domain, subdomain C and D KM388_14900 PF01614 Bacterial transcriptional regulator KM388_14900 PF09339 IclR helix-turn-helix domain KM388_14905 PF10502 Signal peptidase, peptidase S26 KM388_14910 PF03932 CutC family KM388_14915 PF07454 Stage II sporulation protein P (SpoIIP) KM388_14930 PF02770 Acyl-CoA dehydrogenase, middle domain KM388_14930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM388_14930 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KM388_14945 PF07670 Nucleoside recognition KM388_14960 PF02915 Rubrerythrin KM388_14970 PF00440 Bacterial regulatory proteins, tetR family KM388_14975 PF00391 PEP-utilising enzyme, mobile domain KM388_14975 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KM388_14980 PF00753 Metallo-beta-lactamase superfamily KM388_14995 PF07875 Coat F domain KM388_15000 PF08892 YqcI/YcgG family KM388_15005 PF01810 LysE type translocator KM388_15020 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM388_15025 PF10710 Protein of unknown function (DUF2512) KM388_15030 PF11553 Protein of unknown function (DUF3231) KM388_15035 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM388_15040 PF00107 Zinc-binding dehydrogenase KM388_15040 PF13823 Alcohol dehydrogenase GroES-associated KM388_15040 PF08240 Alcohol dehydrogenase GroES-like domain KM388_15055 PF00206 Lyase KM388_15055 PF10415 Fumarase C C-terminus KM388_15060 PF00710 Asparaginase, N-terminal KM388_15060 PF17763 Glutaminase/Asparaginase C-terminal domain KM388_15065 PF01381 Helix-turn-helix KM388_15075 PF01541 GIY-YIG catalytic domain KM388_15075 PF12826 Helix-hairpin-helix motif KM388_15075 PF02151 UvrB/uvrC motif KM388_15075 PF08459 UvrC Helix-hairpin-helix N-terminal KM388_15080 PF13520 Amino acid permease KM388_15085 PF05525 Branched-chain amino acid transport protein KM388_15090 PF03807 NADP oxidoreductase coenzyme F420-dependent KM388_15090 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM388_15095 PF13564 DoxX-like family KM388_15100 PF00390 Malic enzyme, N-terminal domain KM388_15100 PF03949 Malic enzyme, NAD binding domain KM388_15115 PF03845 Spore germination protein KM388_15125 PF00072 Response regulator receiver domain KM388_15125 PF08664 YcbB domain KM388_15135 PF04960 Glutaminase KM388_15140 PF01235 Sodium:alanine symporter family KM388_15170 PF02872 5'-nucleotidase, C-terminal domain KM388_15170 PF00149 Calcineurin-like phosphoesterase KM388_15170 PF17936 Bacterial Ig domain KM388_15175 PF06628 Catalase-related immune-responsive KM388_15175 PF00199 Catalase KM388_15180 PF00561 alpha/beta hydrolase fold KM388_15185 PF00857 Isochorismatase family KM388_15205 PF03466 LysR substrate binding domain KM388_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_15210 PF01047 MarR family KM388_15215 PF01544 CorA-like Mg2+ transporter protein KM388_15230 PF11181 Heat induced stress protein YflT KM388_15245 PF03073 TspO/MBR family KM388_15250 PF00875 DNA photolyase KM388_15250 PF03441 FAD binding domain of DNA photolyase KM388_15260 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) KM388_15265 PF00361 Proton-conducting membrane transporter KM388_15265 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KM388_15270 PF10057 Uncharacterized conserved protein (DUF2294) KM388_15285 PF01040 UbiA prenyltransferase family KM388_15290 PF00561 alpha/beta hydrolase fold KM388_15295 PF01297 Zinc-uptake complex component A periplasmic KM388_15300 PF00950 ABC 3 transport family KM388_15305 PF00005 ABC transporter KM388_15330 PF01451 Low molecular weight phosphotyrosine protein phosphatase KM388_15335 PF01758 Sodium Bile acid symporter family KM388_15340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_15345 PF01022 Bacterial regulatory protein, arsR family KM388_15360 PF00012 Hsp70 protein KM388_15375 PF01037 Lrp/AsnC ligand binding domain KM388_15390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_15410 PF02805 Metal binding domain of Ada KM388_15410 PF12833 Helix-turn-helix domain KM388_15420 PF00144 Beta-lactamase KM388_15445 PF12802 MarR family KM388_15450 PF00667 FAD binding domain KM388_15450 PF00258 Flavodoxin KM388_15450 PF00175 Oxidoreductase NAD-binding domain KM388_15450 PF00067 Cytochrome P450 KM388_15455 PF07690 Major Facilitator Superfamily KM388_15480 PF00486 Transcriptional regulatory protein, C terminal KM388_15480 PF00072 Response regulator receiver domain KM388_15485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_15485 PF00512 His Kinase A (phospho-acceptor) domain KM388_15485 PF00672 HAMP domain KM388_15510 PF00291 Pyridoxal-phosphate dependent enzyme KM388_15530 PF01381 Helix-turn-helix KM388_15545 PF00753 Metallo-beta-lactamase superfamily KM388_15550 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family KM388_15560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KM388_15560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KM388_15565 PF04072 Leucine carboxyl methyltransferase KM388_15580 PF00005 ABC transporter KM388_15585 PF02687 FtsX-like permease family KM388_15600 PF00672 HAMP domain KM388_15600 PF00512 His Kinase A (phospho-acceptor) domain KM388_15600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_15605 PF00072 Response regulator receiver domain KM388_15605 PF00486 Transcriptional regulatory protein, C terminal KM388_15615 PF01047 MarR family KM388_15625 PF04299 Putative FMN-binding domain KM388_15630 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_15630 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_15635 PF07690 Major Facilitator Superfamily KM388_15640 PF02589 LUD domain KM388_15645 PF02589 LUD domain KM388_15645 PF13183 4Fe-4S dicluster domain KM388_15645 PF11870 Domain of unknown function (DUF3390) KM388_15650 PF02754 Cysteine-rich domain KM388_15665 PF17676 LD-carboxypeptidase C-terminal domain KM388_15665 PF02016 LD-carboxypeptidase N-terminal domain KM388_15690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM388_15690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KM388_15695 PF05116 Sucrose-6F-phosphate phosphohydrolase KM388_15705 PF00356 Bacterial regulatory proteins, lacI family KM388_15710 PF18801 response regulator aspartate phosphatase H, N terminal KM388_15745 PF02743 Cache domain KM388_15745 PF00672 HAMP domain KM388_15745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_15760 PF01554 MatE KM388_15770 PF08453 Peptidase family M9 N-terminal KM388_15770 PF18496 Collagenase G catalytic helper subdomain KM388_15770 PF01752 Collagenase KM388_15780 PF07690 Major Facilitator Superfamily KM388_15785 PF00440 Bacterial regulatory proteins, tetR family KM388_15785 PF16859 Tetracyclin repressor-like, C-terminal domain KM388_15795 PF01022 Bacterial regulatory protein, arsR family KM388_15805 PF03313 Serine dehydratase alpha chain KM388_15810 PF01842 ACT domain KM388_15810 PF03315 Serine dehydratase beta chain KM388_15820 PF00202 Aminotransferase class-III KM388_15825 PF00708 Acylphosphatase KM388_15825 PF17788 HypF Kae1-like domain KM388_15825 PF01300 Telomere recombination KM388_15825 PF07503 HypF finger KM388_15830 PF00586 AIR synthase related protein, N-terminal domain KM388_15830 PF02769 AIR synthase related protein, C-terminal domain KM388_15840 PF01037 Lrp/AsnC ligand binding domain KM388_15845 PF13520 Amino acid permease KM388_15860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KM388_15860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KM388_15860 PF01842 ACT domain KM388_15865 PF00266 Aminotransferase class-V KM388_15880 PF04542 Sigma-70 region 2 KM388_15880 PF08281 Sigma-70, region 4 KM388_15895 PF07883 Cupin domain KM388_15900 PF12833 Helix-turn-helix domain KM388_15900 PF01497 Periplasmic binding protein KM388_15905 PF01804 Penicillin amidase KM388_15945 PF14044 NETI protein KM388_15950 PF07690 Major Facilitator Superfamily KM388_15955 PF12697 Alpha/beta hydrolase family KM388_15960 PF01047 MarR family KM388_15965 PF07690 Major Facilitator Superfamily KM388_15975 PF12679 ABC-2 family transporter protein KM388_15980 PF00005 ABC transporter KM388_15980 PF13732 Domain of unknown function (DUF4162) KM388_15985 PF13396 Phospholipase_D-nuclease N-terminal KM388_15995 PF17314 Family of unknown function (DUF5360) KM388_16000 PF00893 Small Multidrug Resistance protein KM388_16005 PF00440 Bacterial regulatory proteins, tetR family KM388_16010 PF17440 Thiol-activated cytolysin beta sandwich domain KM388_16010 PF01289 Thiol-activated cytolysin KM388_16015 PF02667 Short chain fatty acid transporter KM388_16025 PF02525 Flavodoxin-like fold KM388_16055 PF00005 ABC transporter KM388_16060 PF02361 Cobalt transport protein KM388_16075 PF03737 Aldolase/RraA KM388_16080 PF03606 C4-dicarboxylate anaerobic carrier KM388_16085 PF04231 Endonuclease I KM388_16100 PF01381 Helix-turn-helix KM388_16105 PF02660 Glycerol-3-phosphate acyltransferase KM388_16110 PF04073 Aminoacyl-tRNA editing domain KM388_16115 PF13393 Histidyl-tRNA synthetase KM388_16115 PF03129 Anticodon binding domain KM388_16130 PF01638 HxlR-like helix-turn-helix KM388_16135 PF00881 Nitroreductase family KM388_16145 PF02887 Pyruvate kinase, alpha/beta domain KM388_16145 PF00391 PEP-utilising enzyme, mobile domain KM388_16145 PF00224 Pyruvate kinase, barrel domain KM388_16165 PF00005 ABC transporter KM388_16190 PF13419 Haloacid dehalogenase-like hydrolase KM388_16200 PF13350 Tyrosine phosphatase family KM388_16225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_16230 PF00480 ROK family KM388_16235 PF07690 Major Facilitator Superfamily KM388_16240 PF14602 Hexapeptide repeat of succinyl-transferase KM388_16240 PF12464 Maltose acetyltransferase KM388_16250 PF00005 ABC transporter KM388_16250 PF02687 FtsX-like permease family KM388_16250 PF12704 MacB-like periplasmic core domain KM388_16260 PF00579 tRNA synthetases class I (W and Y) KM388_16265 PF13288 DXP reductoisomerase C-terminal domain KM388_16265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KM388_16265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KM388_16270 PF01594 AI-2E family transporter KM388_16290 PF08241 Methyltransferase domain KM388_16300 PF07690 Major Facilitator Superfamily KM388_16320 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_16330 PF03471 Transporter associated domain KM388_16330 PF01595 Cyclin M transmembrane N-terminal domain KM388_16330 PF00571 CBS domain KM388_16335 PF13411 MerR HTH family regulatory protein KM388_16340 PF00892 EamA-like transporter family KM388_16345 PF00805 Pentapeptide repeats (8 copies) KM388_16350 PF06906 Protein of unknown function (DUF1272) KM388_16355 PF10282 Lactonase, 7-bladed beta-propeller KM388_16360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KM388_16360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KM388_16365 PF02447 GntP family permease KM388_16370 PF00923 Transaldolase/Fructose-6-phosphate aldolase KM388_16375 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KM388_16375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KM388_16380 PF02779 Transketolase, pyrimidine binding domain KM388_16380 PF02780 Transketolase, C-terminal domain KM388_16380 PF00456 Transketolase, thiamine diphosphate binding domain KM388_16390 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KM388_16390 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KM388_16395 PF08240 Alcohol dehydrogenase GroES-like domain KM388_16395 PF00107 Zinc-binding dehydrogenase KM388_16400 PF00296 Luciferase-like monooxygenase KM388_16410 PF00698 Acyl transferase domain KM388_16410 PF08240 Alcohol dehydrogenase GroES-like domain KM388_16410 PF16197 Ketoacyl-synthetase C-terminal extension KM388_16410 PF14765 Polyketide synthase dehydratase KM388_16410 PF00109 Beta-ketoacyl synthase, N-terminal domain KM388_16410 PF02801 Beta-ketoacyl synthase, C-terminal domain KM388_16410 PF08659 KR domain KM388_16410 PF00550 Phosphopantetheine attachment site KM388_16415 PF00106 short chain dehydrogenase KM388_16420 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM388_16420 PF07504 Fungalysin/Thermolysin Propeptide Motif KM388_16420 PF03413 Peptidase propeptide and YPEB domain KM388_16420 PF01447 Thermolysin metallopeptidase, catalytic domain KM388_16440 PF00248 Aldo/keto reductase family KM388_16445 PF07690 Major Facilitator Superfamily KM388_16455 PF03928 Haem-degrading KM388_16460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_16490 PF03960 ArsC family KM388_16495 PF01638 HxlR-like helix-turn-helix KM388_16500 PF07702 UTRA domain KM388_16500 PF00392 Bacterial regulatory proteins, gntR family KM388_16505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM388_16505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KM388_16515 PF01638 HxlR-like helix-turn-helix KM388_16520 PF01638 HxlR-like helix-turn-helix KM388_16525 PF00248 Aldo/keto reductase family KM388_16555 PF02567 Phenazine biosynthesis-like protein KM388_16575 PF00501 AMP-binding enzyme KM388_16575 PF13193 AMP-binding enzyme C-terminal domain KM388_16585 PF01638 HxlR-like helix-turn-helix KM388_16605 PF01022 Bacterial regulatory protein, arsR family KM388_16615 PF12791 Anti-sigma factor N-terminus KM388_16620 PF04542 Sigma-70 region 2 KM388_16635 PF00440 Bacterial regulatory proteins, tetR family KM388_16655 PF05656 Protein of unknown function (DUF805) KM388_16660 PF01061 ABC-2 type transporter KM388_16665 PF13732 Domain of unknown function (DUF4162) KM388_16665 PF00005 ABC transporter KM388_16680 PF03063 Prismane/CO dehydrogenase family KM388_16690 PF00753 Metallo-beta-lactamase superfamily KM388_16695 PF01471 Putative peptidoglycan binding domain KM388_16695 PF01183 Glycosyl hydrolases family 25 KM388_16720 PF00144 Beta-lactamase KM388_16760 PF00753 Metallo-beta-lactamase superfamily KM388_16765 PF08240 Alcohol dehydrogenase GroES-like domain KM388_16765 PF00107 Zinc-binding dehydrogenase KM388_16770 PF00324 Amino acid permease KM388_16775 PF07690 Major Facilitator Superfamily KM388_16800 PF02585 GlcNAc-PI de-N-acetylase KM388_16805 PF08830 Protein of unknown function (DUF1806) KM388_16810 PF03600 Citrate transporter KM388_16830 PF01497 Periplasmic binding protein KM388_16835 PF01032 FecCD transport family KM388_16840 PF01032 FecCD transport family KM388_16845 PF05675 Protein of unknown function (DUF817) KM388_16850 PF02567 Phenazine biosynthesis-like protein KM388_16855 PF13170 Protein of unknown function (DUF4003) KM388_16870 PF10901 Protein of unknown function (DUF2690) KM388_16880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_16880 PF03466 LysR substrate binding domain KM388_16885 PF08240 Alcohol dehydrogenase GroES-like domain KM388_16885 PF00107 Zinc-binding dehydrogenase KM388_16900 PF00488 MutS domain V KM388_16900 PF01713 Smr domain KM388_16915 PF00797 N-acetyltransferase KM388_16920 PF08439 Oligopeptidase F KM388_16920 PF01432 Peptidase family M3 KM388_16925 PF00144 Beta-lactamase KM388_16935 PF07690 Major Facilitator Superfamily KM388_16940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_16940 PF03466 LysR substrate binding domain KM388_16955 PF03009 Glycerophosphoryl diester phosphodiesterase family KM388_16975 PF01494 FAD binding domain KM388_16980 PF01022 Bacterial regulatory protein, arsR family KM388_16985 PF08240 Alcohol dehydrogenase GroES-like domain KM388_16985 PF00107 Zinc-binding dehydrogenase KM388_16990 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KM388_17005 PF04299 Putative FMN-binding domain KM388_17020 PF01758 Sodium Bile acid symporter family KM388_17025 PF01565 FAD binding domain KM388_17025 PF02913 FAD linked oxidases, C-terminal domain KM388_17045 PF00132 Bacterial transferase hexapeptide (six repeats) KM388_17050 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KM388_17055 PF00535 Glycosyl transferase family 2 KM388_17060 PF00378 Enoyl-CoA hydratase/isomerase KM388_17065 PF01752 Collagenase KM388_17065 PF08453 Peptidase family M9 N-terminal KM388_17065 PF18496 Collagenase G catalytic helper subdomain KM388_17070 PF02308 MgtC family KM388_17085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_17090 PF04294 VanW like protein KM388_17100 PF13039 Protein of unknown function (DUF3900) KM388_17100 PF13037 Domain of unknown function (DUF3898) KM388_17120 PF00313 'Cold-shock' DNA-binding domain KM388_17130 PF00258 Flavodoxin KM388_17140 PF00293 NUDIX domain KM388_17150 PF00132 Bacterial transferase hexapeptide (six repeats) KM388_17160 PF00106 short chain dehydrogenase KM388_17180 PF01156 Inosine-uridine preferring nucleoside hydrolase KM388_17185 PF00474 Sodium:solute symporter family KM388_17195 PF00171 Aldehyde dehydrogenase family KM388_17205 PF14151 YfhD-like protein KM388_17210 PF13243 Squalene-hopene cyclase C-terminal domain KM388_17210 PF13249 Squalene-hopene cyclase N-terminal domain KM388_17215 PF02681 Divergent PAP2 family KM388_17220 PF00892 EamA-like transporter family KM388_17225 PF06961 Protein of unknown function (DUF1294) KM388_17240 PF10609 NUBPL iron-transfer P-loop NTPase KM388_17250 PF02391 MoaE protein KM388_17255 PF03453 MoeA N-terminal region (domain I and II) KM388_17255 PF03454 MoeA C-terminal region (domain IV) KM388_17255 PF00994 Probable molybdopterin binding domain KM388_17260 PF00899 ThiF family KM388_17265 PF01226 Formate/nitrite transporter KM388_17270 PF06463 Molybdenum Cofactor Synthesis C KM388_17270 PF04055 Radical SAM superfamily KM388_17275 PF02634 FdhD/NarQ family KM388_17280 PF10057 Uncharacterized conserved protein (DUF2294) KM388_17285 PF07849 Protein of unknown function (DUF1641) KM388_17295 PF03323 Bacillus/Clostridium GerA spore germination protein KM388_17335 PF08241 Methyltransferase domain KM388_17340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_17345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_17350 PF00375 Sodium:dicarboxylate symporter family KM388_17355 PF03816 Cell envelope-related transcriptional attenuator domain KM388_17365 PF08281 Sigma-70, region 4 KM388_17365 PF04542 Sigma-70 region 2 KM388_17385 PF00005 ABC transporter KM388_17385 PF13732 Domain of unknown function (DUF4162) KM388_17395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM388_17395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KM388_17400 PF00521 DNA gyrase/topoisomerase IV, subunit A KM388_17400 PF03989 DNA gyrase C-terminal domain, beta-propeller KM388_17405 PF00986 DNA gyrase B subunit, carboxyl terminus KM388_17405 PF00204 DNA gyrase B KM388_17405 PF01751 Toprim domain KM388_17405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_17410 PF13380 CoA binding domain KM388_17415 PF13180 PDZ domain KM388_17420 PF00072 Response regulator receiver domain KM388_17420 PF00486 Transcriptional regulatory protein, C terminal KM388_17430 PF03477 ATP cone domain KM388_17430 PF13597 Anaerobic ribonucleoside-triphosphate reductase KM388_17435 PF02660 Glycerol-3-phosphate acyltransferase KM388_17440 PF01521 Iron-sulphur cluster biosynthesis KM388_17445 PF03061 Thioesterase superfamily KM388_17450 PF00704 Glycosyl hydrolases family 18 KM388_17450 PF01476 LysM domain KM388_17460 PF08177 Small acid-soluble spore protein N family KM388_17465 PF13040 Fur-regulated basic protein B KM388_17470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KM388_17470 PF07733 Bacterial DNA polymerase III alpha NTPase domain KM388_17470 PF11490 DNA polymerase III polC-type N-terminus II KM388_17470 PF00929 Exonuclease KM388_17470 PF01336 OB-fold nucleic acid binding domain KM388_17470 PF14579 Helix-hairpin-helix motif KM388_17470 PF02811 PHP domain KM388_17475 PF00578 AhpC/TSA family KM388_17485 PF00005 ABC transporter KM388_17485 PF00664 ABC transporter transmembrane region KM388_17485 PF03412 Peptidase C39 family KM388_17490 PF00694 Aconitase C-terminal domain KM388_17490 PF00330 Aconitase family (aconitate hydratase) KM388_17500 PF01522 Polysaccharide deacetylase KM388_17530 PF02272 DHHA1 domain KM388_17530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM388_17530 PF01411 tRNA synthetases class II (A) KM388_17535 PF13344 Haloacid dehalogenase-like hydrolase KM388_17535 PF00293 NUDIX domain KM388_17545 PF02803 Thiolase, C-terminal domain KM388_17545 PF00108 Thiolase, N-terminal domain KM388_17550 PF13193 AMP-binding enzyme C-terminal domain KM388_17550 PF00501 AMP-binding enzyme KM388_17555 PF02632 BioY family KM388_17560 PF13193 AMP-binding enzyme C-terminal domain KM388_17560 PF00501 AMP-binding enzyme KM388_17580 PF05532 CsbD-like KM388_17610 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_17610 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_17620 PF13426 PAS domain KM388_17620 PF13188 PAS domain KM388_17620 PF00989 PAS fold KM388_17620 PF00512 His Kinase A (phospho-acceptor) domain KM388_17620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_17625 PF01738 Dienelactone hydrolase family KM388_17630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_17635 PF00474 Sodium:solute symporter family KM388_17640 PF01645 Conserved region in glutamate synthase KM388_17645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KM388_17650 PF02559 CarD-like/TRCF domain KM388_17655 PF00491 Arginase family KM388_17660 PF01979 Amidohydrolase family KM388_17665 PF01175 Urocanase Rossmann-like domain KM388_17665 PF17391 Urocanase N-terminal domain KM388_17665 PF17392 Urocanase C-terminal domain KM388_17670 PF00221 Aromatic amino acid lyase KM388_17675 PF09021 HutP KM388_17680 PF01209 ubiE/COQ5 methyltransferase family KM388_17700 PF11084 Protein of unknown function (DUF2621) KM388_17735 PF07301 Protein of unknown function (DUF1453) KM388_17740 PF02683 Cytochrome C biogenesis protein transmembrane region KM388_17750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_17750 PF03466 LysR substrate binding domain KM388_17755 PF03788 LrgA family KM388_17760 PF04172 LrgB-like family KM388_17785 PF01510 N-acetylmuramoyl-L-alanine amidase KM388_17785 PF01471 Putative peptidoglycan binding domain KM388_17800 PF00664 ABC transporter transmembrane region KM388_17800 PF00005 ABC transporter KM388_17805 PF00664 ABC transporter transmembrane region KM388_17805 PF00005 ABC transporter KM388_17810 PF03672 Uncharacterised protein family (UPF0154) KM388_17815 PF10747 Sporulation inhibitor of replication protein SirA KM388_17820 PF02780 Transketolase, C-terminal domain KM388_17820 PF00456 Transketolase, thiamine diphosphate binding domain KM388_17820 PF02779 Transketolase, pyrimidine binding domain KM388_17825 PF01385 Probable transposase KM388_17825 PF12323 Helix-turn-helix domain KM388_17825 PF07282 Putative transposase DNA-binding domain KM388_17830 PF00528 Binding-protein-dependent transport system inner membrane component KM388_17835 PF00528 Binding-protein-dependent transport system inner membrane component KM388_17840 PF00005 ABC transporter KM388_17855 PF05979 Bacterial protein of unknown function (DUF896) KM388_17860 PF00239 Resolvase, N terminal domain KM388_17865 PF00717 Peptidase S24-like KM388_17865 PF01726 LexA DNA binding domain KM388_17880 PF03551 Transcriptional regulator PadR-like family KM388_17915 PF01476 LysM domain KM388_17915 PF01471 Putative peptidoglycan binding domain KM388_17915 PF01510 N-acetylmuramoyl-L-alanine amidase KM388_17920 PF05105 Bacteriophage holin family KM388_18065 PF08281 Sigma-70, region 4 KM388_18110 PF02511 Thymidylate synthase complementing protein KM388_18115 PF00145 C-5 cytosine-specific DNA methylase KM388_18190 PF01381 Helix-turn-helix KM388_18210 PF02899 Phage integrase, N-terminal SAM-like domain KM388_18210 PF00589 Phage integrase family KM388_18215 PF03951 Glutamine synthetase, beta-Grasp domain KM388_18215 PF00120 Glutamine synthetase, catalytic domain KM388_18220 PF13411 MerR HTH family regulatory protein KM388_18225 PF06838 Methionine gamma-lyase KM388_18230 PF01926 50S ribosome-binding GTPase KM388_18230 PF16360 GTP-binding GTPase Middle Region KM388_18230 PF13167 GTP-binding GTPase N-terminal KM388_18235 PF03458 UPF0126 domain KM388_18240 PF00004 ATPase family associated with various cellular activities (AAA) KM388_18240 PF17866 AAA lid domain KM388_18255 PF17209 Hfq protein KM388_18270 PF06725 3D domain KM388_18270 PF01476 LysM domain KM388_18275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM388_18275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KM388_18280 PF00294 pfkB family carbohydrate kinase KM388_18285 PF08220 DeoR-like helix-turn-helix domain KM388_18285 PF00455 DeoR C terminal sensor domain KM388_18295 PF04238 Protein of unknown function (DUF420) KM388_18305 PF00324 Amino acid permease KM388_18310 PF00041 Fibronectin type III domain KM388_18310 PF00704 Glycosyl hydrolases family 18 KM388_18320 PF10518 TAT (twin-arginine translocation) pathway signal sequence KM388_18320 PF00149 Calcineurin-like phosphoesterase KM388_18325 PF01226 Formate/nitrite transporter KM388_18330 PF00216 Bacterial DNA-binding protein KM388_18335 PF00403 Heavy-metal-associated domain KM388_18340 PF00403 Heavy-metal-associated domain KM388_18345 PF02583 Metal-sensitive transcriptional repressor KM388_18355 PF00756 Putative esterase KM388_18360 PF00005 ABC transporter KM388_18365 PF01032 FecCD transport family KM388_18370 PF01032 FecCD transport family KM388_18385 PF12833 Helix-turn-helix domain KM388_18385 PF02805 Metal binding domain of Ada KM388_18390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KM388_18390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KM388_18395 PF00730 HhH-GPD superfamily base excision DNA repair protein KM388_18395 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain KM388_18400 PF07687 Peptidase dimerisation domain KM388_18400 PF01546 Peptidase family M20/M25/M40 KM388_18420 PF00561 alpha/beta hydrolase fold KM388_18425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_18440 PF10787 Uncharacterised protein from bacillus cereus group KM388_18445 PF04172 LrgB-like family KM388_18450 PF03788 LrgA family KM388_18455 PF00155 Aminotransferase class I and II KM388_18455 PF00392 Bacterial regulatory proteins, gntR family KM388_18460 PF00561 alpha/beta hydrolase fold KM388_18460 PF00364 Biotin-requiring enzyme KM388_18465 PF02585 GlcNAc-PI de-N-acetylase KM388_18480 PF00388 Phosphatidylinositol-specific phospholipase C, X domain KM388_18485 PF00082 Subtilase family KM388_18490 PF07486 Cell Wall Hydrolase KM388_18495 PF03275 UDP-galactopyranose mutase KM388_18500 PF00884 Sulfatase KM388_18505 PF00350 Dynamin family KM388_18515 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family KM388_18520 PF00512 His Kinase A (phospho-acceptor) domain KM388_18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_18525 PF00486 Transcriptional regulatory protein, C terminal KM388_18525 PF00072 Response regulator receiver domain KM388_18540 PF00005 ABC transporter KM388_18545 PF01119 DNA mismatch repair protein, C-terminal domain KM388_18545 PF08676 MutL C terminal dimerisation domain KM388_18550 PF00488 MutS domain V KM388_18550 PF05188 MutS domain II KM388_18550 PF05190 MutS family domain IV KM388_18550 PF01624 MutS domain I KM388_18550 PF05192 MutS domain III KM388_18555 PF10628 Outer spore coat protein E (CotE) KM388_18560 PF06133 Control of competence regulator ComK, YlbF/YmcA KM388_18565 PF00919 Uncharacterized protein family UPF0004 KM388_18565 PF01938 TRAM domain KM388_18565 PF04055 Radical SAM superfamily KM388_18570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM388_18575 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KM388_18575 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KM388_18575 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KM388_18580 PF01244 Membrane dipeptidase (Peptidase family M19) KM388_18585 PF04232 Stage V sporulation protein S (SpoVS) KM388_18590 PF13277 YmdB-like protein KM388_18595 PF12072 Domain of unknown function (DUF3552) KM388_18595 PF00013 KH domain KM388_18595 PF01966 HD domain KM388_18600 PF00154 recA bacterial DNA recombination protein KM388_18610 PF00994 Probable molybdopterin binding domain KM388_18610 PF18146 Damage-inducible protein CinA KH domain KM388_18610 PF02464 Competence-damaged protein KM388_18615 PF01066 CDP-alcohol phosphatidyltransferase KM388_18620 PF13464 Domain of unknown function (DUF4115) KM388_18625 PF11868 Protein of unknown function (DUF3388) KM388_18630 PF11588 Protein of unknown function (DUF3243) KM388_18640 PF05193 Peptidase M16 inactive domain KM388_18640 PF00675 Insulinase (Peptidase family M16) KM388_18645 PF05193 Peptidase M16 inactive domain KM388_18650 PF02653 Branched-chain amino acid transport system / permease component KM388_18660 PF00005 ABC transporter KM388_18665 PF02608 ABC transporter substrate-binding protein PnrA-like KM388_18670 PF07702 UTRA domain KM388_18670 PF00392 Bacterial regulatory proteins, gntR family KM388_18675 PF09397 Ftsk gamma domain KM388_18675 PF01580 FtsK/SpoIIIE family KM388_18675 PF17854 FtsK alpha domain KM388_18680 PF14035 YlzJ-like protein KM388_18685 PF00574 Clp protease KM388_18690 PF17770 Ribonuclease J C-terminal domain KM388_18690 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KM388_18690 PF00753 Metallo-beta-lactamase superfamily KM388_18695 PF00701 Dihydrodipicolinate synthetase family KM388_18700 PF13840 ACT domain KM388_18700 PF00696 Amino acid kinase family KM388_18705 PF02774 Semialdehyde dehydrogenase, dimerisation domain KM388_18705 PF01118 Semialdehyde dehydrogenase, NAD binding domain KM388_18710 PF02441 Flavoprotein KM388_18715 PF16924 Dipicolinate synthase subunit A N-terminal domain KM388_18715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KM388_18720 PF05239 PRC-barrel domain KM388_18725 PF05193 Peptidase M16 inactive domain KM388_18725 PF00675 Insulinase (Peptidase family M16) KM388_18730 PF01522 Polysaccharide deacetylase KM388_18735 PF03725 3' exoribonuclease family, domain 2 KM388_18735 PF00013 KH domain KM388_18735 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KM388_18735 PF01138 3' exoribonuclease family, domain 1 KM388_18735 PF00575 S1 RNA binding domain KM388_18740 PF00312 Ribosomal protein S15 KM388_18745 PF06574 FAD synthetase KM388_18745 PF01687 Riboflavin kinase KM388_18750 PF01509 TruB family pseudouridylate synthase (N terminal domain) KM388_18750 PF16198 tRNA pseudouridylate synthase B C-terminal domain KM388_18755 PF02033 Ribosome-binding factor A KM388_18760 PF04456 Protein of unknown function (DUF503) KM388_18765 PF00009 Elongation factor Tu GTP binding domain KM388_18765 PF04760 Translation initiation factor IF-2, N-terminal region KM388_18765 PF11987 Translation-initiation factor 2 KM388_18770 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KM388_18775 PF04296 Protein of unknown function (DUF448) KM388_18780 PF00575 S1 RNA binding domain KM388_18780 PF08529 NusA N-terminal domain KM388_18780 PF13184 NusA-like KH domain KM388_18785 PF02576 RimP N-terminal domain KM388_18785 PF17384 RimP C-terminal SH3 domain KM388_18790 PF14579 Helix-hairpin-helix motif KM388_18790 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KM388_18790 PF11490 DNA polymerase III polC-type N-terminus II KM388_18790 PF14480 DNA polymerase III polC-type N-terminus I KM388_18790 PF02811 PHP domain KM388_18790 PF00929 Exonuclease KM388_18790 PF07733 Bacterial DNA polymerase III alpha NTPase domain KM388_18795 PF03129 Anticodon binding domain KM388_18795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM388_18795 PF04073 Aminoacyl-tRNA editing domain KM388_18800 PF17820 PDZ domain KM388_18800 PF02163 Peptidase family M50 KM388_18805 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KM388_18805 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KM388_18805 PF13288 DXP reductoisomerase C-terminal domain KM388_18815 PF01255 Putative undecaprenyl diphosphate synthase KM388_18820 PF01765 Ribosome recycling factor KM388_18825 PF00696 Amino acid kinase family KM388_18830 PF00889 Elongation factor TS KM388_18835 PF00318 Ribosomal protein S2 KM388_18840 PF06018 CodY GAF-like domain KM388_18840 PF08222 CodY helix-turn-helix domain KM388_18845 PF00004 ATPase family associated with various cellular activities (AAA) KM388_18845 PF10431 C-terminal, D2-small domain, of ClpB protein KM388_18845 PF07724 AAA domain (Cdc48 subfamily) KM388_18850 PF00227 Proteasome subunit KM388_18855 PF02899 Phage integrase, N-terminal SAM-like domain KM388_18855 PF00589 Phage integrase family KM388_18860 PF01134 Glucose inhibited division protein A KM388_18865 PF01131 DNA topoisomerase KM388_18865 PF01751 Toprim domain KM388_18865 PF01396 Topoisomerase DNA binding C4 zinc finger KM388_18875 PF00549 CoA-ligase KM388_18875 PF02629 CoA binding domain KM388_18880 PF00549 CoA-ligase KM388_18880 PF08442 ATP-grasp domain KM388_18885 PF01351 Ribonuclease HII KM388_18890 PF01926 50S ribosome-binding GTPase KM388_18895 PF10502 Signal peptidase, peptidase S26 KM388_18900 PF01245 Ribosomal protein L19 KM388_18905 PF01746 tRNA (Guanine-1)-methyltransferase KM388_18910 PF05239 PRC-barrel domain KM388_18910 PF01782 RimM N-terminal domain KM388_18920 PF00886 Ribosomal protein S16 KM388_18925 PF02881 SRP54-type protein, helical bundle domain KM388_18925 PF00448 SRP54-type protein, GTPase domain KM388_18925 PF02978 Signal peptide binding domain KM388_18930 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KM388_18935 PF02881 SRP54-type protein, helical bundle domain KM388_18935 PF00448 SRP54-type protein, GTPase domain KM388_18940 PF02463 RecF/RecN/SMC N terminal domain KM388_18940 PF06470 SMC proteins Flexible Hinge Domain KM388_18945 PF14622 Ribonuclease-III-like KM388_18945 PF00035 Double-stranded RNA binding motif KM388_18950 PF00550 Phosphopantetheine attachment site KM388_18960 PF00698 Acyl transferase domain KM388_18965 PF02504 Fatty acid synthesis protein KM388_18970 PF03061 Thioesterase superfamily KM388_18975 PF00271 Helicase conserved C-terminal domain KM388_18975 PF17191 RecG wedge domain KM388_18975 PF00270 DEAD/DEAH box helicase KM388_18980 PF02734 DAK2 domain KM388_18980 PF13684 Dihydroxyacetone kinase family KM388_18985 PF03780 Asp23 family, cell envelope-related function KM388_18990 PF00830 Ribosomal L28 family KM388_18995 PF08183 Stage V sporulation protein family KM388_19000 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain KM388_19000 PF04263 Thiamin pyrophosphokinase, catalytic domain KM388_19005 PF00834 Ribulose-phosphate 3 epimerase family KM388_19010 PF03193 RsgA GTPase KM388_19010 PF16745 RsgA N-terminal domain KM388_19015 PF03793 PASTA domain KM388_19015 PF00069 Protein kinase domain KM388_19025 PF04055 Radical SAM superfamily KM388_19030 PF01029 NusB family KM388_19030 PF01189 16S rRNA methyltransferase RsmB/F KM388_19035 PF02911 Formyl transferase, C-terminal domain KM388_19035 PF00551 Formyl transferase KM388_19040 PF01327 Polypeptide deformylase KM388_19045 PF00271 Helicase conserved C-terminal domain KM388_19045 PF17764 3′ DNA-binding domain (3′BD) KM388_19045 PF18074 Primosomal protein N C-terminal domain KM388_19045 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KM388_19045 PF04851 Type III restriction enzyme, res subunit KM388_19050 PF02441 Flavoprotein KM388_19050 PF04127 DNA / pantothenate metabolism flavoprotein KM388_19055 PF01192 RNA polymerase Rpb6 KM388_19060 PF00625 Guanylate kinase KM388_19065 PF04025 Domain of unknown function (DUF370) KM388_19070 PF08340 Domain of unknown function (DUF1732) KM388_19070 PF03755 YicC-like family, N-terminal region KM388_19075 PF00689 Cation transporting ATPase, C-terminus KM388_19075 PF00690 Cation transporter/ATPase, N-terminus KM388_19080 PF05670 NFACT protein RNA binding domain KM388_19085 PF01321 Creatinase/Prolidase N-terminal domain KM388_19085 PF00557 Metallopeptidase family M24 KM388_19115 PF00156 Phosphoribosyl transferase domain KM388_19120 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KM388_19125 PF01180 Dihydroorotate dehydrogenase KM388_19130 PF00175 Oxidoreductase NAD-binding domain KM388_19130 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KM388_19135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM388_19135 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KM388_19135 PF02142 MGS-like domain KM388_19140 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KM388_19140 PF00117 Glutamine amidotransferase class-I KM388_19145 PF01979 Amidohydrolase family KM388_19150 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KM388_19150 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KM388_19155 PF00860 Permease family KM388_19160 PF00156 Phosphoribosyl transferase domain KM388_19165 PF01479 S4 domain KM388_19165 PF00849 RNA pseudouridylate synthase KM388_19170 PF01252 Signal peptidase (SPase) II KM388_19180 PF08264 Anticodon-binding domain of tRNA KM388_19180 PF00133 tRNA synthetases class I (I, L, M and V) KM388_19180 PF06827 Zinc finger found in FPG and IleRS KM388_19185 PF05103 DivIVA protein KM388_19190 PF01479 S4 domain KM388_19190 PF17774 Putative RNA-binding domain in YlmH KM388_19195 PF02325 YGGT family KM388_19200 PF04472 Cell division protein SepF KM388_19205 PF01168 Alanine racemase, N-terminal domain KM388_19210 PF02578 Multi-copper polyphenol oxidoreductase laccase KM388_19215 PF05239 PRC-barrel domain KM388_19220 PF04539 Sigma-70 region 3 KM388_19220 PF04545 Sigma-70, region 4 KM388_19220 PF04542 Sigma-70 region 2 KM388_19225 PF04542 Sigma-70 region 2 KM388_19225 PF04545 Sigma-70, region 4 KM388_19230 PF03419 Sporulation factor SpoIIGA KM388_19235 PF12327 FtsZ family, C-terminal domain KM388_19235 PF00091 Tubulin/FtsZ family, GTPase domain KM388_19240 PF02491 SHS2 domain inserted in FTSA KM388_19245 PF03799 Cell division protein FtsQ KM388_19245 PF08478 POTRA domain, FtsQ-type KM388_19250 PF01565 FAD binding domain KM388_19250 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KM388_19255 PF04101 Glycosyltransferase family 28 C-terminal domain KM388_19255 PF03033 Glycosyltransferase family 28 N-terminal domain KM388_19260 PF01098 Cell cycle protein KM388_19265 PF02875 Mur ligase family, glutamate ligase domain KM388_19265 PF08245 Mur ligase middle domain KM388_19270 PF00953 Glycosyl transferase family 4 KM388_19270 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KM388_19275 PF01225 Mur ligase family, catalytic domain KM388_19275 PF02875 Mur ligase family, glutamate ligase domain KM388_19275 PF08245 Mur ligase middle domain KM388_19280 PF00905 Penicillin binding protein transpeptidase domain KM388_19280 PF03717 Penicillin-binding Protein dimerisation domain KM388_19280 PF03793 PASTA domain KM388_19285 PF03793 PASTA domain KM388_19285 PF03717 Penicillin-binding Protein dimerisation domain KM388_19285 PF00905 Penicillin binding protein transpeptidase domain KM388_19290 PF04977 Septum formation initiator KM388_19295 PF01795 MraW methylase family KM388_19300 PF10079 Bacillithiol biosynthesis BshC KM388_19305 PF02558 Ketopantoate reductase PanE/ApbA KM388_19305 PF08546 Ketopantoate reductase PanE/ApbA C terminal KM388_19310 PF00583 Acetyltransferase (GNAT) family KM388_19320 PF01783 Ribosomal L32p protein family KM388_19325 PF02620 Large ribosomal RNA subunit accumulation protein YceD KM388_19370 PF12123 N-acetylmuramoyl-l-alanine amidase KM388_19370 PF01510 N-acetylmuramoyl-L-alanine amidase KM388_19375 PF05105 Bacteriophage holin family KM388_19450 PF00574 Clp protease KM388_19460 PF03354 Phage Terminase KM388_19480 PF10137 Predicted nucleotide-binding protein containing TIR-like domain KM388_19485 PF00589 Phage integrase family KM388_19550 PF00692 dUTPase KM388_19590 PF07319 Primosomal protein DnaI N-terminus KM388_19590 PF01695 IstB-like ATP binding protein KM388_19615 PF01381 Helix-turn-helix KM388_19630 PF01381 Helix-turn-helix KM388_19645 PF00589 Phage integrase family KM388_19645 PF14659 Phage integrase, N-terminal SAM-like domain KM388_19650 PF05636 HIGH Nucleotidyl Transferase KM388_19655 PF05362 Lon protease (S16) C-terminal proteolytic domain KM388_19655 PF13180 PDZ domain KM388_19660 PF01734 Patatin-like phospholipase KM388_19665 PF07670 Nucleoside recognition KM388_19670 PF01467 Cytidylyltransferase-like KM388_19685 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) KM388_19690 PF06133 Control of competence regulator ComK, YlbF/YmcA KM388_19695 PF00300 Histidine phosphatase superfamily (branch 1) KM388_19700 PF14003 YlbE-like protein KM388_19705 PF14071 Putative coat protein KM388_19710 PF14504 CAP-associated N-terminal KM388_19710 PF00188 Cysteine-rich secretory protein family KM388_19715 PF08868 YugN-like family KM388_19720 PF00795 Carbon-nitrogen hydrolase KM388_19725 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) KM388_19730 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KM388_19735 PF00510 Cytochrome c oxidase subunit III KM388_19740 PF00115 Cytochrome C and Quinol oxidase polypeptide I KM388_19745 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KM388_19745 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KM388_19745 PF00034 Cytochrome c KM388_19750 PF01040 UbiA prenyltransferase family KM388_19755 PF02628 Cytochrome oxidase assembly protein KM388_19760 PF02436 Conserved carboxylase domain KM388_19760 PF00682 HMGL-like KM388_19760 PF00364 Biotin-requiring enzyme KM388_19760 PF00289 Biotin carboxylase, N-terminal domain KM388_19760 PF02785 Biotin carboxylase C-terminal domain KM388_19760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM388_19765 PF01098 Cell cycle protein KM388_19770 PF07408 Protein of unknown function (DUF1507) KM388_19780 PF02562 PhoH-like protein KM388_19780 PF13638 PIN domain KM388_19790 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) KM388_19800 PF14036 YlaH-like protein KM388_19805 PF00679 Elongation factor G C-terminus KM388_19805 PF14492 Elongation Factor G, domain II KM388_19805 PF03144 Elongation factor Tu domain 2 KM388_19805 PF00009 Elongation factor Tu GTP binding domain KM388_19815 PF00459 Inositol monophosphatase family KM388_19825 PF06335 Protein of unknown function (DUF1054) KM388_19830 PF05256 Uncharacterised protein family (UPF0223) KM388_19835 PF01276 Orn/Lys/Arg decarboxylase, major domain KM388_19835 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KM388_19875 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_19875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM388_19880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM388_19880 PF00364 Biotin-requiring enzyme KM388_19880 PF02817 e3 binding domain KM388_19885 PF02780 Transketolase, C-terminal domain KM388_19885 PF02779 Transketolase, pyrimidine binding domain KM388_19890 PF00676 Dehydrogenase E1 component KM388_19900 PF01327 Polypeptide deformylase KM388_19910 PF07288 Protein of unknown function (DUF1447) KM388_19915 PF17770 Ribonuclease J C-terminal domain KM388_19915 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KM388_19915 PF00753 Metallo-beta-lactamase superfamily KM388_19920 PF02080 TrkA-C domain KM388_19920 PF02254 TrkA-N domain KM388_19930 PF07687 Peptidase dimerisation domain KM388_19930 PF01546 Peptidase family M20/M25/M40 KM388_19935 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KM388_19935 PF00132 Bacterial transferase hexapeptide (six repeats) KM388_19935 PF14602 Hexapeptide repeat of succinyl-transferase KM388_19940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_19940 PF03466 LysR substrate binding domain KM388_19955 PF04308 Ribonuclease H-like KM388_19965 PF08796 Protein of unknown function (DUF1797) KM388_19980 PF10388 EAL-domain associated signalling protein domain KM388_19980 PF00563 EAL domain KM388_19990 PF10518 TAT (twin-arginine translocation) pathway signal sequence KM388_19990 PF00149 Calcineurin-like phosphoesterase KM388_20005 PF02541 Ppx/GppA phosphatase family KM388_20010 PF14177 YkyB-like protein KM388_20035 PF07690 Major Facilitator Superfamily KM388_20045 PF08267 Cobalamin-independent synthase, N-terminal domain KM388_20045 PF01717 Cobalamin-independent synthase, Catalytic domain KM388_20055 PF14040 Deoxyribonuclease NucA/NucB KM388_20065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_20065 PF00512 His Kinase A (phospho-acceptor) domain KM388_20075 PF00155 Aminotransferase class I and II KM388_20080 PF00356 Bacterial regulatory proteins, lacI family KM388_20080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM388_20085 PF00528 Binding-protein-dependent transport system inner membrane component KM388_20090 PF00528 Binding-protein-dependent transport system inner membrane component KM388_20095 PF13416 Bacterial extracellular solute-binding protein KM388_20100 PF16657 Maltogenic Amylase, C-terminal domain KM388_20100 PF02903 Alpha amylase, N-terminal ig-like domain KM388_20100 PF00128 Alpha amylase, catalytic domain KM388_20105 PF16657 Maltogenic Amylase, C-terminal domain KM388_20105 PF00128 Alpha amylase, catalytic domain KM388_20110 PF17912 MalK OB fold domain KM388_20110 PF03459 TOBE domain KM388_20110 PF00005 ABC transporter KM388_20150 PF02803 Thiolase, C-terminal domain KM388_20150 PF00108 Thiolase, N-terminal domain KM388_20155 PF00293 NUDIX domain KM388_20185 PF03551 Transcriptional regulator PadR-like family KM388_20200 PF01008 Initiation factor 2 subunit family KM388_20205 PF01636 Phosphotransferase enzyme family KM388_20210 PF00795 Carbon-nitrogen hydrolase KM388_20215 PF00155 Aminotransferase class I and II KM388_20220 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain KM388_20220 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain KM388_20230 PF00596 Class II Aldolase and Adducin N-terminal domain KM388_20235 PF03079 ARD/ARD' family KM388_20255 PF08448 PAS fold KM388_20255 PF00990 Diguanylate cyclase, GGDEF domain KM388_20260 PF00881 Nitroreductase family KM388_20275 PF05524 PEP-utilising enzyme, N-terminal KM388_20275 PF02896 PEP-utilising enzyme, TIM barrel domain KM388_20275 PF00391 PEP-utilising enzyme, mobile domain KM388_20280 PF00381 PTS HPr component phosphorylation site KM388_20285 PF00367 phosphotransferase system, EIIB KM388_20285 PF02378 Phosphotransferase system, EIIC KM388_20285 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KM388_20290 PF03123 CAT RNA binding domain KM388_20290 PF00874 PRD domain KM388_20300 PF00392 Bacterial regulatory proteins, gntR family KM388_20300 PF07702 UTRA domain KM388_20305 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KM388_20310 PF01979 Amidohydrolase family KM388_20320 PF04079 Segregation and condensation complex subunit ScpB KM388_20325 PF02616 Segregation and condensation protein ScpA KM388_20335 PF03745 Domain of unknown function (DUF309) KM388_20340 PF00583 Acetyltransferase (GNAT) family KM388_20345 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KM388_20350 PF06207 Protein of unknown function (DUF1002) KM388_20360 PF03323 Bacillus/Clostridium GerA spore germination protein KM388_20365 PF14097 Stage V sporulation protein AE1 KM388_20370 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM388_20375 PF07451 Stage V sporulation protein AD (SpoVAD) KM388_20380 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM388_20385 PF13782 Stage V sporulation protein AB KM388_20390 PF12164 Stage V sporulation protein AA KM388_20400 PF00209 Sodium:neurotransmitter symporter family KM388_20405 PF04545 Sigma-70, region 4 KM388_20405 PF04539 Sigma-70 region 3 KM388_20405 PF04542 Sigma-70 region 2 KM388_20410 PF13581 Histidine kinase-like ATPase domain KM388_20415 PF01740 STAS domain KM388_20420 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_20420 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_20425 PF00392 Bacterial regulatory proteins, gntR family KM388_20430 PF00005 ABC transporter KM388_20445 PF01047 MarR family KM388_20455 PF00860 Permease family KM388_20460 PF01544 CorA-like Mg2+ transporter protein KM388_20465 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KM388_20465 PF00591 Glycosyl transferase family, a/b domain KM388_20465 PF02885 Glycosyl transferase family, helical bundle domain KM388_20470 PF01048 Phosphorylase superfamily KM388_20475 PF01676 Metalloenzyme superfamily KM388_20485 PF02899 Phage integrase, N-terminal SAM-like domain KM388_20485 PF00589 Phage integrase family KM388_20490 PF14004 Protein of unknown function (DUF4227) KM388_20495 PF01475 Ferric uptake regulator family KM388_20500 PF01944 Stage II sporulation protein M KM388_20510 PF00293 NUDIX domain KM388_20515 PF13072 Mother cell inhibitor of FtsZ KM388_20520 PF00248 Aldo/keto reductase family KM388_20525 PF00248 Aldo/keto reductase family KM388_20530 PF04229 GrpB protein KM388_20530 PF13673 Acetyltransferase (GNAT) domain KM388_20540 PF02872 5'-nucleotidase, C-terminal domain KM388_20540 PF00565 Staphylococcal nuclease homologue KM388_20540 PF00149 Calcineurin-like phosphoesterase KM388_20540 PF00746 LPXTG cell wall anchor motif KM388_20550 PF12146 Serine aminopeptidase, S33 KM388_20555 PF13726 Na+-H+ antiporter family KM388_20555 PF03553 Na+/H+ antiporter family KM388_20560 PF00356 Bacterial regulatory proteins, lacI family KM388_20565 PF00583 Acetyltransferase (GNAT) family KM388_20570 PF12146 Serine aminopeptidase, S33 KM388_20575 PF10827 Protein of unknown function (DUF2552) KM388_20585 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM388_20585 PF01872 RibD C-terminal domain KM388_20590 PF00677 Lumazine binding domain KM388_20595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KM388_20595 PF00925 GTP cyclohydrolase II KM388_20600 PF00885 6,7-dimethyl-8-ribityllumazine synthase KM388_20610 PF06968 Biotin and Thiamin Synthesis associated domain KM388_20610 PF04055 Radical SAM superfamily KM388_20615 PF13847 Methyltransferase domain KM388_20620 PF12697 Alpha/beta hydrolase family KM388_20620 PF08241 Methyltransferase domain KM388_20625 PF00155 Aminotransferase class I and II KM388_20635 PF00202 Aminotransferase class-III KM388_20645 PF03553 Na+/H+ antiporter family KM388_20650 PF00149 Calcineurin-like phosphoesterase KM388_20650 PF02872 5'-nucleotidase, C-terminal domain KM388_20660 PF13404 AsnC-type helix-turn-helix domain KM388_20660 PF01037 Lrp/AsnC ligand binding domain KM388_20675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KM388_20675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KM388_20680 PF00202 Aminotransferase class-III KM388_20685 PF00696 Amino acid kinase family KM388_20690 PF01960 ArgJ family KM388_20695 PF01118 Semialdehyde dehydrogenase, NAD binding domain KM388_20695 PF02774 Semialdehyde dehydrogenase, dimerisation domain KM388_20705 PF00106 short chain dehydrogenase KM388_20710 PF00753 Metallo-beta-lactamase superfamily KM388_20715 PF03807 NADP oxidoreductase coenzyme F420-dependent KM388_20715 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM388_20720 PF03313 Serine dehydratase alpha chain KM388_20725 PF01842 ACT domain KM388_20725 PF03315 Serine dehydratase beta chain KM388_20735 PF12706 Beta-lactamase superfamily domain KM388_20735 PF00753 Metallo-beta-lactamase superfamily KM388_20745 PF00817 impB/mucB/samB family KM388_20745 PF11798 IMS family HHH motif KM388_20745 PF11799 impB/mucB/samB family C-terminal domain KM388_20755 PF01546 Peptidase family M20/M25/M40 KM388_20755 PF07687 Peptidase dimerisation domain KM388_20760 PF13302 Acetyltransferase (GNAT) domain KM388_20775 PF03734 L,D-transpeptidase catalytic domain KM388_20780 PF11728 Putative aromatic acid exporter C-terminal domain KM388_20780 PF06081 Aromatic acid exporter family member 1 KM388_20785 PF00005 ABC transporter KM388_20790 PF00528 Binding-protein-dependent transport system inner membrane component KM388_20795 PF00497 Bacterial extracellular solute-binding proteins, family 3 KM388_20800 PF06491 Disulphide isomerase KM388_20805 PF11208 Protein of unknown function (DUF2992) KM388_20810 PF00293 NUDIX domain KM388_20810 PF09297 NADH pyrophosphatase zinc ribbon domain KM388_20815 PF01098 Cell cycle protein KM388_20820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KM388_20820 PF00364 Biotin-requiring enzyme KM388_20820 PF02817 e3 binding domain KM388_20825 PF02780 Transketolase, C-terminal domain KM388_20825 PF02779 Transketolase, pyrimidine binding domain KM388_20830 PF00676 Dehydrogenase E1 component KM388_20835 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_20835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KM388_20840 PF00871 Acetokinase family KM388_20845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KM388_20845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KM388_20850 PF01515 Phosphate acetyl/butaryl transferase KM388_20855 PF00158 Sigma-54 interaction domain KM388_20855 PF02954 Bacterial regulatory protein, Fis family KM388_20855 PF00989 PAS fold KM388_20865 PF03009 Glycerophosphoryl diester phosphodiesterase family KM388_20870 PF14174 YycC-like protein KM388_20880 PF00072 Response regulator receiver domain KM388_20880 PF08769 Sporulation initiation factor Spo0A C terminal KM388_20885 PF17820 PDZ domain KM388_20885 PF05580 SpoIVB peptidase S55 KM388_20890 PF13476 AAA domain KM388_20895 PF01316 Arginine repressor, DNA binding domain KM388_20895 PF02863 Arginine repressor, C-terminal domain KM388_20900 PF01728 FtsJ-like methyltransferase KM388_20900 PF01479 S4 domain KM388_20905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KM388_20905 PF02779 Transketolase, pyrimidine binding domain KM388_20905 PF02780 Transketolase, C-terminal domain KM388_20910 PF00348 Polyprenyl synthetase KM388_20915 PF02609 Exonuclease VII small subunit KM388_20920 PF02601 Exonuclease VII, large subunit KM388_20920 PF13742 OB-fold nucleic acid binding domain KM388_20925 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KM388_20925 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KM388_20930 PF01029 NusB family KM388_20935 PF03780 Asp23 family, cell envelope-related function KM388_20940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KM388_20940 PF02785 Biotin carboxylase C-terminal domain KM388_20940 PF00289 Biotin carboxylase, N-terminal domain KM388_20945 PF00364 Biotin-requiring enzyme KM388_20955 PF12685 SpoIIIAH-like protein KM388_20965 PF09581 Stage III sporulation protein AF (Spore_III_AF) KM388_20970 PF09546 Stage III sporulation protein AE (spore_III_AE) KM388_20975 PF06686 Stage III sporulation protein AC/AD protein family KM388_20980 PF06686 Stage III sporulation protein AC/AD protein family KM388_20985 PF09548 Stage III sporulation protein AB (spore_III_AB) KM388_21010 PF09285 Elongation factor P, C-terminal KM388_21010 PF01132 Elongation factor P (EF-P) OB domain KM388_21010 PF08207 Elongation factor P (EF-P) KOW-like domain KM388_21015 PF01321 Creatinase/Prolidase N-terminal domain KM388_21015 PF00557 Metallopeptidase family M24 KM388_21020 PF01220 Dehydroquinase class II KM388_21025 PF11085 Conserved membrane protein YqhR KM388_21030 PF07136 Protein of unknown function (DUF1385) KM388_21040 PF13419 Haloacid dehalogenase-like hydrolase KM388_21045 PF02742 Iron dependent repressor, metal binding and dimerisation domain KM388_21045 PF01325 Iron dependent repressor, N-terminal DNA binding domain KM388_21060 PF03099 Biotin/lipoate A/B protein ligase family KM388_21065 PF00581 Rhodanese-like domain KM388_21070 PF00356 Bacterial regulatory proteins, lacI family KM388_21070 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM388_21080 PF00893 Small Multidrug Resistance protein KM388_21085 PF00893 Small Multidrug Resistance protein KM388_21120 PF00005 ABC transporter KM388_21125 PF00392 Bacterial regulatory proteins, gntR family KM388_21140 PF02347 Glycine cleavage system P-protein KM388_21145 PF02347 Glycine cleavage system P-protein KM388_21150 PF08669 Glycine cleavage T-protein C-terminal barrel domain KM388_21150 PF01571 Aminomethyltransferase folate-binding domain KM388_21155 PF00176 SNF2 family N-terminal domain KM388_21155 PF00271 Helicase conserved C-terminal domain KM388_21160 PF11079 Bacterial protein YqhG of unknown function KM388_21180 PF14038 YqzE-like protein KM388_21185 PF01202 Shikimate kinase KM388_21210 PF07963 Prokaryotic N-terminal methylation motif KM388_21215 PF07963 Prokaryotic N-terminal methylation motif KM388_21220 PF00482 Type II secretion system (T2SS), protein F KM388_21225 PF00437 Type II/IV secretion system protein KM388_21235 PF11117 Protein of unknown function (DUF2626) KM388_21240 PF00375 Sodium:dicarboxylate symporter family KM388_21275 PF04101 Glycosyltransferase family 28 C-terminal domain KM388_21275 PF03033 Glycosyltransferase family 28 N-terminal domain KM388_21285 PF02219 Methylenetetrahydrofolate reductase KM388_21285 PF02574 Homocysteine S-methyltransferase KM388_21290 PF01053 Cys/Met metabolism PLP-dependent enzyme KM388_21295 PF01053 Cys/Met metabolism PLP-dependent enzyme KM388_21305 PF01022 Bacterial regulatory protein, arsR family KM388_21315 PF00753 Metallo-beta-lactamase superfamily KM388_21320 PF10958 Protein of unknown function (DUF2759) KM388_21325 PF00480 ROK family KM388_21330 PF06014 Bacterial protein of unknown function (DUF910) KM388_21335 PF01812 5-formyltetrahydrofolate cyclo-ligase family KM388_21340 PF00471 Ribosomal protein L33 KM388_21345 PF00483 Nucleotidyl transferase KM388_21350 PF01895 PhoU domain KM388_21355 PF00005 ABC transporter KM388_21360 PF00528 Binding-protein-dependent transport system inner membrane component KM388_21365 PF00528 Binding-protein-dependent transport system inner membrane component KM388_21370 PF12849 PBP superfamily domain KM388_21375 PF00905 Penicillin binding protein transpeptidase domain KM388_21375 PF03717 Penicillin-binding Protein dimerisation domain KM388_21380 PF07690 Major Facilitator Superfamily KM388_21385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KM388_21385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KM388_21405 PF04551 GcpE protein KM388_21410 PF01475 Ferric uptake regulator family KM388_21415 PF00950 ABC 3 transport family KM388_21420 PF00005 ABC transporter KM388_21425 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_21425 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_21430 PF11116 Protein of unknown function (DUF2624) KM388_21435 PF01261 Xylose isomerase-like TIM barrel KM388_21440 PF00270 DEAD/DEAH box helicase KM388_21440 PF00271 Helicase conserved C-terminal domain KM388_21450 PF02401 LytB protein KM388_21455 PF01784 NIF3 (NGG1p interacting factor 3) KM388_21460 PF04816 tRNA (adenine(22)-N(1))-methyltransferase KM388_21465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KM388_21470 PF03979 Sigma-70 factor, region 1.1 KM388_21470 PF00140 Sigma-70 factor, region 1.2 KM388_21470 PF04542 Sigma-70 region 2 KM388_21470 PF04539 Sigma-70 region 3 KM388_21470 PF04545 Sigma-70, region 4 KM388_21475 PF10410 DnaB-helicase binding domain of primase KM388_21475 PF08275 DNA primase catalytic core, N-terminal domain KM388_21475 PF01807 CHC2 zinc finger KM388_21480 PF03618 Kinase/pyrophosphorylase KM388_21485 PF00571 CBS domain KM388_21485 PF08279 HTH domain KM388_21490 PF02565 Recombination protein O C terminal KM388_21490 PF11967 Recombination protein O N terminal KM388_21500 PF07650 KH domain KM388_21500 PF01926 50S ribosome-binding GTPase KM388_21505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM388_21510 PF01219 Prokaryotic diacylglycerol kinase KM388_21515 PF02130 Uncharacterized protein family UPF0054 KM388_21520 PF01966 HD domain KM388_21520 PF07698 7TM receptor with intracellular HD hydrolase KM388_21520 PF07697 7TM-HD extracellular KM388_21525 PF02562 PhoH-like protein KM388_21530 PF06898 Putative stage IV sporulation protein YqfD KM388_21535 PF07873 YabP family KM388_21540 PF09424 Yqey-like protein KM388_21545 PF01165 Ribosomal protein S21 KM388_21550 PF04055 Radical SAM superfamily KM388_21550 PF00919 Uncharacterized protein family UPF0004 KM388_21550 PF01938 TRAM domain KM388_21555 PF04452 RNA methyltransferase KM388_21565 PF00684 DnaJ central domain KM388_21565 PF01556 DnaJ C terminal domain KM388_21565 PF00226 DnaJ domain KM388_21570 PF00012 Hsp70 protein KM388_21575 PF01025 GrpE KM388_21580 PF01628 HrcA protein C terminal domain KM388_21585 PF06969 HemN C-terminal domain KM388_21585 PF04055 Radical SAM superfamily KM388_21590 PF01638 HxlR-like helix-turn-helix KM388_21595 PF00679 Elongation factor G C-terminus KM388_21595 PF00009 Elongation factor Tu GTP binding domain KM388_21595 PF03144 Elongation factor Tu domain 2 KM388_21595 PF06421 GTP-binding protein LepA C-terminus KM388_21605 PF03418 Germination protease KM388_21610 PF01649 Ribosomal protein S20 KM388_21615 PF06144 DNA polymerase III, delta subunit KM388_21620 PF14141 YqzM-like protein KM388_21630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KM388_21635 PF10531 SLBB domain KM388_21640 PF03807 NADP oxidoreductase coenzyme F420-dependent KM388_21640 PF14748 Pyrroline-5-carboxylate reductase dimerisation KM388_21645 PF13649 Methyltransferase domain KM388_21655 PF01966 HD domain KM388_21660 PF01467 Cytidylyltransferase-like KM388_21665 PF01985 CRS1 / YhbY (CRM) domain KM388_21670 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KM388_21670 PF01488 Shikimate / quinate 5-dehydrogenase KM388_21670 PF08501 Shikimate dehydrogenase substrate binding domain KM388_21675 PF01926 50S ribosome-binding GTPase KM388_21690 PF02666 Phosphatidylserine decarboxylase KM388_21695 PF04542 Sigma-70 region 2 KM388_21695 PF04545 Sigma-70, region 4 KM388_21705 PF16244 Domain of unknown function (DUF4901) KM388_21710 PF00471 Ribosomal protein L33 KM388_21715 PF00881 Nitroreductase family KM388_21720 PF04607 Region found in RelA / SpoT proteins KM388_21730 PF00245 Alkaline phosphatase KM388_21740 PF00561 alpha/beta hydrolase fold KM388_21740 PF08386 TAP-like protein KM388_21775 PF13860 FlgD Ig-like domain KM388_21775 PF05922 Peptidase inhibitor I9 KM388_21775 PF02225 PA domain KM388_21775 PF00082 Subtilase family KM388_21780 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KM388_21790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_21795 PF07681 DoxX KM388_21825 PF00005 ABC transporter KM388_21830 PF01032 FecCD transport family KM388_21835 PF01497 Periplasmic binding protein KM388_21840 PF14143 YrhC-like protein KM388_21845 PF00465 Iron-containing alcohol dehydrogenase KM388_21845 PF00171 Aldehyde dehydrogenase family KM388_21850 PF01053 Cys/Met metabolism PLP-dependent enzyme KM388_21855 PF00291 Pyridoxal-phosphate dependent enzyme KM388_21860 PF01048 Phosphorylase superfamily KM388_21865 PF08241 Methyltransferase domain KM388_21880 PF03717 Penicillin-binding Protein dimerisation domain KM388_21880 PF00905 Penicillin binding protein transpeptidase domain KM388_21885 PF03449 Transcription elongation factor, N-terminal KM388_21885 PF01272 Transcription elongation factor, GreA/GreB, C-term KM388_21890 PF00485 Phosphoribulokinase / Uridine kinase family KM388_21895 PF01136 Peptidase family U32 KM388_21895 PF16325 Peptidase family U32 C-terminal domain KM388_21900 PF01136 Peptidase family U32 KM388_21905 PF01596 O-methyltransferase KM388_21910 PF02618 YceG-like family KM388_21915 PF06949 Protein of unknown function (DUF1292) KM388_21920 PF03652 Holliday junction resolvase KM388_21925 PF06135 IreB regulatory phosphoprotein KM388_21930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM388_21930 PF02272 DHHA1 domain KM388_21930 PF01411 tRNA synthetases class II (A) KM388_21940 PF01594 AI-2E family transporter KM388_21960 PF14490 Helix-hairpin-helix containing domain KM388_21960 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KM388_21960 PF13538 UvrD-like helicase C-terminal domain KM388_21975 PF00266 Aminotransferase class-V KM388_21980 PF02082 Transcriptional regulator KM388_21985 PF16193 AAA C-terminal domain KM388_21985 PF12002 MgsA AAA+ ATPase C terminal KM388_21985 PF05496 Holliday junction DNA helicase RuvB P-loop domain KM388_21995 PF00899 ThiF family KM388_22000 PF01336 OB-fold nucleic acid binding domain KM388_22000 PF02938 GAD domain KM388_22000 PF00152 tRNA synthetases class II (D, K and N) KM388_22005 PF03129 Anticodon binding domain KM388_22005 PF13393 Histidyl-tRNA synthetase KM388_22015 PF02580 D-Tyr-tRNA(Tyr) deacylase KM388_22020 PF04607 Region found in RelA / SpoT proteins KM388_22020 PF02824 TGS domain KM388_22020 PF13291 ACT domain KM388_22025 PF00156 Phosphoribosyl transferase domain KM388_22030 PF01368 DHH family KM388_22030 PF02272 DHHA1 domain KM388_22030 PF17768 RecJ OB domain KM388_22030 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KM388_22035 PF01545 Cation efflux family KM388_22035 PF16916 Dimerisation domain of Zinc Transporter KM388_22040 PF07549 SecD/SecF GG Motif KM388_22040 PF02355 Protein export membrane protein KM388_22045 PF13797 Post-transcriptional regulator KM388_22050 PF01943 Polysaccharide biosynthesis protein KM388_22050 PF14667 Polysaccharide biosynthesis C-terminal domain KM388_22055 PF04239 Protein of unknown function (DUF421) KM388_22065 PF02699 Preprotein translocase subunit KM388_22070 PF01702 Queuine tRNA-ribosyltransferase KM388_22075 PF02547 Queuosine biosynthesis protein KM388_22080 PF11146 Protein of unknown function (DUF2905) KM388_22085 PF17864 RuvB AAA lid domain KM388_22085 PF05491 RuvB C-terminal winged helix domain KM388_22085 PF05496 Holliday junction DNA helicase RuvB P-loop domain KM388_22090 PF07499 RuvA, C-terminal domain KM388_22090 PF01330 RuvA N terminal domain KM388_22095 PF01497 Periplasmic binding protein KM388_22105 PF00892 EamA-like transporter family KM388_22110 PF00892 EamA-like transporter family KM388_22115 PF01022 Bacterial regulatory protein, arsR family KM388_22130 PF01476 LysM domain KM388_22135 PF02445 Quinolinate synthetase A protein KM388_22140 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KM388_22140 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KM388_22145 PF02910 Fumarate reductase flavoprotein C-term KM388_22145 PF00890 FAD binding domain KM388_22150 PF00266 Aminotransferase class-V KM388_22155 PF08279 HTH domain KM388_22155 PF02829 3H domain KM388_22160 PF03473 MOSC domain KM388_22160 PF03475 3-alpha domain KM388_22165 PF01842 ACT domain KM388_22165 PF00800 Prephenate dehydratase KM388_22170 PF02687 FtsX-like permease family KM388_22175 PF02687 FtsX-like permease family KM388_22180 PF00005 ABC transporter KM388_22195 PF09269 Domain of unknown function (DUF1967) KM388_22195 PF01018 GTP1/OBG KM388_22195 PF01926 50S ribosome-binding GTPase KM388_22200 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KM388_22200 PF14682 Sporulation initiation phospho-transferase B, C-terminal KM388_22205 PF01016 Ribosomal L27 protein KM388_22210 PF04327 Cysteine protease Prp KM388_22215 PF00829 Ribosomal prokaryotic L21 protein KM388_22220 PF10150 Ribonuclease E/G family KM388_22220 PF00575 S1 RNA binding domain KM388_22225 PF02163 Peptidase family M50 KM388_22230 PF01551 Peptidase family M23 KM388_22235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KM388_22240 PF03775 Septum formation inhibitor MinC, C-terminal domain KM388_22250 PF04085 rod shape-determining protein MreC KM388_22260 PF04002 RadC-like JAB domain KM388_22265 PF02545 Maf-like protein KM388_22275 PF02875 Mur ligase family, glutamate ligase domain KM388_22275 PF08245 Mur ligase middle domain KM388_22280 PF08264 Anticodon-binding domain of tRNA KM388_22280 PF00133 tRNA synthetases class I (I, L, M and V) KM388_22280 PF10458 Valyl tRNA synthetase tRNA binding arm KM388_22290 PF01476 LysM domain KM388_22295 PF00202 Aminotransferase class-III KM388_22300 PF00490 Delta-aminolevulinic acid dehydratase KM388_22305 PF02602 Uroporphyrinogen-III synthase HemD KM388_22310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KM388_22310 PF03900 Porphobilinogen deaminase, C-terminal domain KM388_22315 PF01578 Cytochrome C assembly protein KM388_22320 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KM388_22320 PF01488 Shikimate / quinate 5-dehydrogenase KM388_22320 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KM388_22325 PF01047 MarR family KM388_22330 PF02566 OsmC-like protein KM388_22335 PF01926 50S ribosome-binding GTPase KM388_22340 PF02190 ATP-dependent protease La (LON) substrate-binding domain KM388_22340 PF05362 Lon protease (S16) C-terminal proteolytic domain KM388_22340 PF00004 ATPase family associated with various cellular activities (AAA) KM388_22345 PF00004 ATPase family associated with various cellular activities (AAA) KM388_22345 PF05362 Lon protease (S16) C-terminal proteolytic domain KM388_22350 PF07724 AAA domain (Cdc48 subfamily) KM388_22350 PF10431 C-terminal, D2-small domain, of ClpB protein KM388_22350 PF06689 ClpX C4-type zinc finger KM388_22355 PF05698 Bacterial trigger factor protein (TF) C-terminus KM388_22355 PF05697 Bacterial trigger factor protein (TF) KM388_22355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KM388_22370 PF08000 Bacterial PH domain KM388_22370 PF11724 YvbH-like oligomerisation region KM388_22390 PF12850 Calcineurin-like phosphoesterase superfamily domain KM388_22395 PF01725 Ham1 family KM388_22400 PF01138 3' exoribonuclease family, domain 1 KM388_22400 PF03725 3' exoribonuclease family, domain 2 KM388_22405 PF10646 Sporulation and spore germination KM388_22410 PF01177 Asp/Glu/Hydantoin racemase KM388_22415 PF07690 Major Facilitator Superfamily KM388_22425 PF00440 Bacterial regulatory proteins, tetR family KM388_22440 PF00196 Bacterial regulatory proteins, luxR family KM388_22445 PF00860 Permease family KM388_22455 PF07969 Amidohydrolase family KM388_22460 PF07969 Amidohydrolase family KM388_22465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_22470 PF12911 N-terminal TM domain of oligopeptide transport permease C KM388_22470 PF00528 Binding-protein-dependent transport system inner membrane component KM388_22475 PF00528 Binding-protein-dependent transport system inner membrane component KM388_22480 PF00005 ABC transporter KM388_22480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_22485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KM388_22485 PF00005 ABC transporter KM388_22490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_22490 PF06580 Histidine kinase KM388_22490 PF07694 5TMR of 5TMR-LYT KM388_22495 PF04397 LytTr DNA-binding domain KM388_22495 PF00072 Response regulator receiver domain KM388_22510 PF04024 PspC domain KM388_22515 PF07883 Cupin domain KM388_22515 PF01381 Helix-turn-helix KM388_22520 PF13536 Putative multidrug resistance efflux transporter KM388_22525 PF00230 Major intrinsic protein KM388_22530 PF02082 Transcriptional regulator KM388_22545 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) KM388_22555 PF01618 MotA/TolQ/ExbB proton channel family KM388_22560 PF02557 D-alanyl-D-alanine carboxypeptidase KM388_22565 PF03061 Thioesterase superfamily KM388_22570 PF13085 2Fe-2S iron-sulfur cluster binding domain KM388_22570 PF13183 4Fe-4S dicluster domain KM388_22575 PF02910 Fumarate reductase flavoprotein C-term KM388_22575 PF00890 FAD binding domain KM388_22580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KM388_22585 PF10702 Protein of unknown function (DUF2507) KM388_22590 PF08459 UvrC Helix-hairpin-helix N-terminal KM388_22590 PF02151 UvrB/uvrC motif KM388_22590 PF01541 GIY-YIG catalytic domain KM388_22595 PF00085 Thioredoxin KM388_22600 PF00766 Electron transfer flavoprotein FAD-binding domain KM388_22600 PF01012 Electron transfer flavoprotein domain KM388_22605 PF01012 Electron transfer flavoprotein domain KM388_22610 PF00378 Enoyl-CoA hydratase/isomerase KM388_22615 PF00440 Bacterial regulatory proteins, tetR family KM388_22615 PF08359 YsiA-like protein, C-terminal region KM388_22620 PF00501 AMP-binding enzyme KM388_22620 PF13193 AMP-binding enzyme C-terminal domain KM388_22630 PF01497 Periplasmic binding protein KM388_22635 PF01032 FecCD transport family KM388_22640 PF05163 DinB family KM388_22670 PF00005 ABC transporter KM388_22675 PF00512 His Kinase A (phospho-acceptor) domain KM388_22675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_22680 PF00072 Response regulator receiver domain KM388_22680 PF00486 Transcriptional regulatory protein, C terminal KM388_22690 PF09962 Uncharacterized conserved protein (DUF2196) KM388_22695 PF17785 PUA-like domain KM388_22695 PF10672 S-adenosylmethionine-dependent methyltransferase KM388_22705 PF03992 Antibiotic biosynthesis monooxygenase KM388_22710 PF04203 Sortase domain KM388_22715 PF00005 ABC transporter KM388_22720 PF01032 FecCD transport family KM388_22725 PF01497 Periplasmic binding protein KM388_22730 PF05031 Iron Transport-associated domain KM388_22740 PF05031 Iron Transport-associated domain KM388_22745 PF05525 Branched-chain amino acid transport protein KM388_22750 PF01479 S4 domain KM388_22750 PF00849 RNA pseudouridylate synthase KM388_22755 PF01713 Smr domain KM388_22755 PF00488 MutS domain V KM388_22760 PF14716 Helix-hairpin-helix domain KM388_22760 PF14791 DNA polymerase beta thumb KM388_22760 PF02811 PHP domain KM388_22765 PF02674 Colicin V production protein KM388_22770 PF05164 Cell division protein ZapA KM388_22775 PF01351 Ribonuclease HII KM388_22775 PF11858 Domain of unknown function (DUF3378) KM388_22795 PF01336 OB-fold nucleic acid binding domain KM388_22795 PF00152 tRNA synthetases class II (D, K and N) KM388_22800 PF03483 B3/4 domain KM388_22800 PF03484 tRNA synthetase B5 domain KM388_22800 PF03147 Ferredoxin-fold anticodon binding domain KM388_22800 PF01588 Putative tRNA binding domain KM388_22800 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KM388_22805 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KM388_22805 PF01409 tRNA synthetases class II core domain (F) KM388_22810 PF00588 SpoU rRNA Methylase family KM388_22810 PF08032 RNA 2'-O ribose methyltransferase substrate binding KM388_22815 PF14098 Small, acid-soluble spore protein I KM388_22820 PF01966 HD domain KM388_22845 PF07690 Major Facilitator Superfamily KM388_22855 PF00440 Bacterial regulatory proteins, tetR family KM388_22855 PF16859 Tetracyclin repressor-like, C-terminal domain KM388_22860 PF05343 M42 glutamyl aminopeptidase KM388_22870 PF00453 Ribosomal protein L20 KM388_22875 PF01632 Ribosomal protein L35 KM388_22880 PF00707 Translation initiation factor IF-3, C-terminal domain KM388_22880 PF05198 Translation initiation factor IF-3, N-terminal domain KM388_22885 PF03129 Anticodon binding domain KM388_22885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM388_22885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KM388_22885 PF02824 TGS domain KM388_22890 PF08812 YtxC-like family KM388_22895 PF07319 Primosomal protein DnaI N-terminus KM388_22895 PF01695 IstB-like ATP binding protein KM388_22900 PF07261 Replication initiation and membrane attachment KM388_22905 PF03477 ATP cone domain KM388_22910 PF02675 S-adenosylmethionine decarboxylase KM388_22915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KM388_22915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KM388_22920 PF01121 Dephospho-CoA kinase KM388_22925 PF02659 Putative manganese efflux pump KM388_22930 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KM388_22930 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KM388_22930 PF06827 Zinc finger found in FPG and IleRS KM388_22935 PF00476 DNA polymerase family A KM388_22935 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KM388_22935 PF01367 5'-3' exonuclease, C-terminal SAM fold KM388_22940 PF16736 Single Cache-like KM388_22940 PF00989 PAS fold KM388_22940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_22940 PF00512 His Kinase A (phospho-acceptor) domain KM388_22945 PF00486 Transcriptional regulatory protein, C terminal KM388_22945 PF00072 Response regulator receiver domain KM388_22960 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM388_22960 PF00056 lactate/malate dehydrogenase, NAD binding domain KM388_22965 PF00180 Isocitrate/isopropylmalate dehydrogenase KM388_22970 PF00285 Citrate synthase, C-terminal domain KM388_22975 PF04284 Protein of unknown function (DUF441) KM388_22980 PF01594 AI-2E family transporter KM388_22985 PF04186 FxsA cytoplasmic membrane protein KM388_22990 PF02887 Pyruvate kinase, alpha/beta domain KM388_22990 PF00391 PEP-utilising enzyme, mobile domain KM388_22990 PF00224 Pyruvate kinase, barrel domain KM388_22995 PF00365 Phosphofructokinase KM388_23000 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KM388_23005 PF01039 Carboxyl transferase domain KM388_23005 PF17848 Acetyl-coA carboxylase zinc finger domain KM388_23010 PF00392 Bacterial regulatory proteins, gntR family KM388_23015 PF03949 Malic enzyme, NAD binding domain KM388_23015 PF00390 Malic enzyme, N-terminal domain KM388_23020 PF14579 Helix-hairpin-helix motif KM388_23020 PF01336 OB-fold nucleic acid binding domain KM388_23020 PF02811 PHP domain KM388_23020 PF07733 Bacterial DNA polymerase III alpha NTPase domain KM388_23020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KM388_23025 PF14034 Sporulation protein YtrH KM388_23035 PF02272 DHHA1 domain KM388_23035 PF01368 DHH family KM388_23040 PF14007 YtpI-like protein KM388_23055 PF03061 Thioesterase superfamily KM388_23055 PF00571 CBS domain KM388_23055 PF00392 Bacterial regulatory proteins, gntR family KM388_23055 PF07085 DRTGG domain KM388_23070 PF00557 Metallopeptidase family M24 KM388_23070 PF01321 Creatinase/Prolidase N-terminal domain KM388_23075 PF11518 Protein of unknown function (DUF3221) KM388_23105 PF12746 GNAT acetyltransferase KM388_23110 PF07883 Cupin domain KM388_23120 PF01381 Helix-turn-helix KM388_23130 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KM388_23130 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KM388_23140 PF00582 Universal stress protein family KM388_23160 PF14698 Argininosuccinate lyase C-terminal KM388_23160 PF00206 Lyase KM388_23165 PF00764 Arginosuccinate synthase KM388_23180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_23180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_23185 PF12787 EcsC protein family KM388_23200 PF00871 Acetokinase family KM388_23205 PF02384 N-6 DNA Methylase KM388_23210 PF08534 Redoxin KM388_23215 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KM388_23225 PF01513 ATP-NAD kinase KM388_23230 PF07969 Amidohydrolase family KM388_23240 PF00501 AMP-binding enzyme KM388_23240 PF13193 AMP-binding enzyme C-terminal domain KM388_23245 PF00269 Small, acid-soluble spore proteins, alpha/beta type KM388_23250 PF02926 THUMP domain KM388_23250 PF02568 Thiamine biosynthesis protein (ThiI) KM388_23255 PF00266 Aminotransferase class-V KM388_23260 PF06160 Septation ring formation regulator, EzrA KM388_23265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_23265 PF03466 LysR substrate binding domain KM388_23270 PF00892 EamA-like transporter family KM388_23280 PF13185 GAF domain KM388_23285 PF01053 Cys/Met metabolism PLP-dependent enzyme KM388_23290 PF01479 S4 domain KM388_23290 PF00163 Ribosomal protein S4/S9 N-terminal domain KM388_23305 PF00579 tRNA synthetases class I (W and Y) KM388_23305 PF01479 S4 domain KM388_23315 PF08281 Sigma-70, region 4 KM388_23315 PF04542 Sigma-70 region 2 KM388_23325 PF00501 AMP-binding enzyme KM388_23325 PF13193 AMP-binding enzyme C-terminal domain KM388_23330 PF00583 Acetyltransferase (GNAT) family KM388_23335 PF00571 CBS domain KM388_23340 PF00850 Histone deacetylase domain KM388_23350 PF00072 Response regulator receiver domain KM388_23350 PF00486 Transcriptional regulatory protein, C terminal KM388_23355 PF00672 HAMP domain KM388_23355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_23355 PF00512 His Kinase A (phospho-acceptor) domain KM388_23355 PF13426 PAS domain KM388_23360 PF12796 Ankyrin repeats (3 copies) KM388_23365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KM388_23370 PF01741 Large-conductance mechanosensitive channel, MscL KM388_23395 PF00356 Bacterial regulatory proteins, lacI family KM388_23400 PF07537 CamS sex pheromone cAM373 precursor KM388_23405 PF11009 Protein of unknown function (DUF2847) KM388_23415 PF02073 Thermophilic metalloprotease (M29) KM388_23435 PF13302 Acetyltransferase (GNAT) domain KM388_23440 PF01225 Mur ligase family, catalytic domain KM388_23440 PF02875 Mur ligase family, glutamate ligase domain KM388_23440 PF08245 Mur ligase middle domain KM388_23450 PF17854 FtsK alpha domain KM388_23450 PF09397 Ftsk gamma domain KM388_23450 PF01580 FtsK/SpoIIIE family KM388_23460 PF01588 Putative tRNA binding domain KM388_23460 PF14794 Domain of unknown function (DUF4479) KM388_23465 PF07285 Protein of unknown function (DUF1444) KM388_23470 PF00085 Thioredoxin KM388_23475 PF01931 Protein of unknown function DUF84 KM388_23480 PF05343 M42 glutamyl aminopeptidase KM388_23490 PF00753 Metallo-beta-lactamase superfamily KM388_23495 PF02390 Putative methyltransferase KM388_23500 PF14165 YtzH-like protein KM388_23505 PF01636 Phosphotransferase enzyme family KM388_23510 PF17999 Pullulanase N1-terminal domain KM388_23510 PF00128 Alpha amylase, catalytic domain KM388_23510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KM388_23515 PF02834 LigT like Phosphoesterase KM388_23520 PF01546 Peptidase family M20/M25/M40 KM388_23525 PF08220 DeoR-like helix-turn-helix domain KM388_23530 PF00849 RNA pseudouridylate synthase KM388_23530 PF01479 S4 domain KM388_23535 PF01943 Polysaccharide biosynthesis protein KM388_23535 PF14667 Polysaccharide biosynthesis C-terminal domain KM388_23545 PF07690 Major Facilitator Superfamily KM388_23550 PF01022 Bacterial regulatory protein, arsR family KM388_23555 PF08327 Activator of Hsp90 ATPase homolog 1-like protein KM388_23565 PF10957 Sporulation protein Cse60 KM388_23575 PF02559 CarD-like/TRCF domain KM388_23585 PF06800 Sugar transport protein KM388_23600 PF02391 MoaE protein KM388_23605 PF03205 Molybdopterin guanine dinucleotide synthesis protein B KM388_23610 PF03453 MoeA N-terminal region (domain I and II) KM388_23610 PF03454 MoeA C-terminal region (domain IV) KM388_23610 PF00994 Probable molybdopterin binding domain KM388_23615 PF01967 MoaC family KM388_23620 PF00899 ThiF family KM388_23625 PF06463 Molybdenum Cofactor Synthesis C KM388_23625 PF04055 Radical SAM superfamily KM388_23645 PF00581 Rhodanese-like domain KM388_23655 PF00561 alpha/beta hydrolase fold KM388_23660 PF03323 Bacillus/Clostridium GerA spore germination protein KM388_23665 PF03845 Spore germination protein KM388_23690 PF13603 Leucyl-tRNA synthetase, Domain 2 KM388_23690 PF00133 tRNA synthetases class I (I, L, M and V) KM388_23690 PF09334 tRNA synthetases class I (M) KM388_23690 PF08264 Anticodon-binding domain of tRNA KM388_23695 PF07690 Major Facilitator Superfamily KM388_23700 PF00999 Sodium/hydrogen exchanger family KM388_23705 PF02080 TrkA-C domain KM388_23710 PF00589 Phage integrase family KM388_23720 PF00005 ABC transporter KM388_23725 PF07786 Protein of unknown function (DUF1624) KM388_23725 PF04235 Protein of unknown function (DUF418) KM388_23735 PF10732 Protein of unknown function (DUF2524) KM388_23740 PF04055 Radical SAM superfamily KM388_23740 PF16199 Radical_SAM C-terminal domain KM388_23745 PF06962 Putative rRNA methylase KM388_23750 PF00005 ABC transporter KM388_23750 PF13732 Domain of unknown function (DUF4162) KM388_23760 PF01177 Asp/Glu/Hydantoin racemase KM388_23775 PF10776 Protein of unknown function (DUF2600) KM388_23780 PF12146 Serine aminopeptidase, S33 KM388_23785 PF00132 Bacterial transferase hexapeptide (six repeats) KM388_23790 PF01569 PAP2 superfamily KM388_23795 PF00534 Glycosyl transferases group 1 KM388_23795 PF13439 Glycosyltransferase Family 4 KM388_23800 PF12804 MobA-like NTP transferase domain KM388_23805 PF00994 Probable molybdopterin binding domain KM388_23820 PF02773 S-adenosylmethionine synthetase, C-terminal domain KM388_23820 PF02772 S-adenosylmethionine synthetase, central domain KM388_23820 PF00438 S-adenosylmethionine synthetase, N-terminal domain KM388_23825 PF01293 Phosphoenolpyruvate carboxykinase KM388_23860 PF01784 NIF3 (NGG1p interacting factor 3) KM388_23865 PF13188 PAS domain KM388_23865 PF00989 PAS fold KM388_23865 PF00512 His Kinase A (phospho-acceptor) domain KM388_23865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_23865 PF13426 PAS domain KM388_23870 PF00512 His Kinase A (phospho-acceptor) domain KM388_23870 PF00989 PAS fold KM388_23870 PF08447 PAS fold KM388_23870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_23875 PF08386 TAP-like protein KM388_23875 PF00561 alpha/beta hydrolase fold KM388_23900 PF00005 ABC transporter KM388_23905 PF00528 Binding-protein-dependent transport system inner membrane component KM388_23930 PF00293 NUDIX domain KM388_23950 PF02664 S-Ribosylhomocysteinase (LuxS) KM388_23955 PF01809 Putative membrane protein insertion efficiency factor KM388_23960 PF00484 Carbonic anhydrase KM388_23965 PF01654 Cytochrome bd terminal oxidase subunit I KM388_23970 PF02322 Cytochrome bd terminal oxidase subunit II KM388_23975 PF10676 Spore germination protein gerPA/gerPF KM388_23990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_23990 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_24015 PF04012 PspA/IM30 family KM388_24030 PF07670 Nucleoside recognition KM388_24030 PF02421 Ferrous iron transport protein B KM388_24030 PF17910 FeoB cytosolic helical domain KM388_24030 PF07664 Ferrous iron transport protein B C terminus KM388_24040 PF09515 Thiamine transporter protein (Thia_YuaJ) KM388_24045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_24045 PF00672 HAMP domain KM388_24045 PF00512 His Kinase A (phospho-acceptor) domain KM388_24050 PF00486 Transcriptional regulatory protein, C terminal KM388_24050 PF00072 Response regulator receiver domain KM388_24075 PF00156 Phosphoribosyl transferase domain KM388_24080 PF00781 Diacylglycerol kinase catalytic domain KM388_24100 PF00248 Aldo/keto reductase family KM388_24115 PF09335 SNARE associated Golgi protein KM388_24120 PF00398 Ribosomal RNA adenine dimethylase KM388_24125 PF02687 FtsX-like permease family KM388_24130 PF00005 ABC transporter KM388_24140 PF00486 Transcriptional regulatory protein, C terminal KM388_24140 PF00072 Response regulator receiver domain KM388_24145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_24150 PF02687 FtsX-like permease family KM388_24155 PF02687 FtsX-like permease family KM388_24160 PF00005 ABC transporter KM388_24175 PF02447 GntP family permease KM388_24180 PF07702 UTRA domain KM388_24180 PF00392 Bacterial regulatory proteins, gntR family KM388_24190 PF07071 KDGP aldolase KM388_24195 PF03841 L-seryl-tRNA selenium transferase KM388_24200 PF01979 Amidohydrolase family KM388_24220 PF00512 His Kinase A (phospho-acceptor) domain KM388_24220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_24225 PF00072 Response regulator receiver domain KM388_24225 PF00486 Transcriptional regulatory protein, C terminal KM388_24230 PF13378 Enolase C-terminal domain-like KM388_24230 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KM388_24235 PF00501 AMP-binding enzyme KM388_24235 PF13193 AMP-binding enzyme C-terminal domain KM388_24240 PF00378 Enoyl-CoA hydratase/isomerase KM388_24245 PF00561 alpha/beta hydrolase fold KM388_24250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KM388_24250 PF16582 Middle domain of thiamine pyrophosphate KM388_24250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KM388_24255 PF00425 chorismate binding enzyme KM388_24260 PF01040 UbiA prenyltransferase family KM388_24265 PF01258 Prokaryotic dksA/traR C4-type zinc finger KM388_24270 PF00313 'Cold-shock' DNA-binding domain KM388_24285 PF00343 Carbohydrate phosphorylase KM388_24290 PF08323 Starch synthase catalytic domain KM388_24290 PF00534 Glycosyl transferases group 1 KM388_24295 PF00483 Nucleotidyl transferase KM388_24300 PF00483 Nucleotidyl transferase KM388_24305 PF02806 Alpha amylase, C-terminal all-beta domain KM388_24305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KM388_24305 PF00128 Alpha amylase, catalytic domain KM388_24320 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM388_24320 PF00056 lactate/malate dehydrogenase, NAD binding domain KM388_24415 PF05698 Bacterial trigger factor protein (TF) C-terminus KM388_24415 PF05697 Bacterial trigger factor protein (TF) KM388_24450 PF02308 MgtC family KM388_24455 PF02254 TrkA-N domain KM388_24455 PF07885 Ion channel KM388_24460 PF08868 YugN-like family KM388_24465 PF00342 Phosphoglucose isomerase KM388_24470 PF04070 Domain of unknown function (DUF378) KM388_24475 PF00575 S1 RNA binding domain KM388_24480 PF00155 Aminotransferase class I and II KM388_24485 PF01037 Lrp/AsnC ligand binding domain KM388_24490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KM388_24490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KM388_24495 PF00561 alpha/beta hydrolase fold KM388_24495 PF08386 TAP-like protein KM388_24505 PF00155 Aminotransferase class I and II KM388_24520 PF08810 Kinase associated protein B KM388_24525 PF00929 Exonuclease KM388_24530 PF03600 Citrate transporter KM388_24545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KM388_24545 PF03129 Anticodon binding domain KM388_24550 PF03061 Thioesterase superfamily KM388_24560 PF02632 BioY family KM388_24570 PF00483 Nucleotidyl transferase KM388_24575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KM388_24575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KM388_24575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KM388_24575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KM388_24580 PF02457 DisA bacterial checkpoint controller nucleotide-binding KM388_24580 PF10372 Bacterial membrane-spanning protein N-terminus KM388_24585 PF00883 Cytosol aminopeptidase family, catalytic domain KM388_24585 PF02789 Cytosol aminopeptidase family, N-terminal domain KM388_24590 PF06725 3D domain KM388_24600 PF00293 NUDIX domain KM388_24600 PF13344 Haloacid dehalogenase-like hydrolase KM388_24605 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_24610 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_24620 PF06445 GyrI-like small molecule binding domain KM388_24635 PF04463 Protein of unknown function (DUF523) KM388_24655 PF01521 Iron-sulphur cluster biosynthesis KM388_24660 PF01678 Diaminopimelate epimerase KM388_24665 PF07293 Protein of unknown function (DUF1450) KM388_24670 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_24680 PF00664 ABC transporter transmembrane region KM388_24680 PF00005 ABC transporter KM388_24680 PF03412 Peptidase C39 family KM388_24685 PF03649 Uncharacterised protein family (UPF0014) KM388_24690 PF08274 PhnA Zinc-Ribbon KM388_24690 PF03831 PhnA domain KM388_24725 PF13427 Domain of unknown function (DUF4111) KM388_24725 PF01909 Nucleotidyltransferase domain KM388_24730 PF07315 Protein of unknown function (DUF1462) KM388_24735 PF01106 NifU-like domain KM388_24750 PF04608 Phosphatidylglycerophosphatase A KM388_24760 PF02525 Flavodoxin-like fold KM388_24765 PF13344 Haloacid dehalogenase-like hydrolase KM388_24775 PF01934 Protein of unknown function DUF86 KM388_24780 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KM388_24795 PF06265 Protein of unknown function (DUF1027) KM388_24800 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KM388_24805 PF07739 TipAS antibiotic-recognition domain KM388_24805 PF13411 MerR HTH family regulatory protein KM388_24810 PF10086 YhfC intramembrane metalloprotease KM388_24830 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KM388_24830 PF04055 Radical SAM superfamily KM388_24835 PF01551 Peptidase family M23 KM388_24845 PF08827 Domain of unknown function (DUF1805) KM388_24850 PF02872 5'-nucleotidase, C-terminal domain KM388_24855 PF03551 Transcriptional regulator PadR-like family KM388_24860 PF04892 VanZ like family KM388_24865 PF01458 Uncharacterized protein family (UPF0051) KM388_24870 PF01592 NifU-like N terminal domain KM388_24875 PF00266 Aminotransferase class-V KM388_24880 PF01458 Uncharacterized protein family (UPF0051) KM388_24885 PF00005 ABC transporter KM388_24890 PF03180 NLPA lipoprotein KM388_24895 PF03180 NLPA lipoprotein KM388_24900 PF00528 Binding-protein-dependent transport system inner membrane component KM388_24905 PF00005 ABC transporter KM388_24905 PF09383 NIL domain KM388_24915 PF00085 Thioredoxin KM388_24920 PF01751 Toprim domain KM388_24925 PF01597 Glycine cleavage H-protein KM388_24930 PF03960 ArsC family KM388_24975 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KM388_24975 PF00056 lactate/malate dehydrogenase, NAD binding domain KM388_24995 PF13305 Tetracyclin repressor-like, C-terminal domain KM388_24995 PF00440 Bacterial regulatory proteins, tetR family KM388_25000 PF00753 Metallo-beta-lactamase superfamily KM388_25005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM388_25005 PF02770 Acyl-CoA dehydrogenase, middle domain KM388_25005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM388_25010 PF00108 Thiolase, N-terminal domain KM388_25010 PF02803 Thiolase, C-terminal domain KM388_25015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KM388_25015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KM388_25015 PF00378 Enoyl-CoA hydratase/isomerase KM388_25020 PF14115 YuzL-like protein KM388_25025 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_25025 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_25030 PF01619 Proline dehydrogenase KM388_25035 PF10835 Protein of unknown function (DUF2573) KM388_25040 PF01910 Thiamine-binding protein KM388_25045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_25045 PF00672 HAMP domain KM388_25045 PF02743 Cache domain KM388_25065 PF07690 Major Facilitator Superfamily KM388_25070 PF13520 Amino acid permease KM388_25080 PF02096 60Kd inner membrane protein KM388_25090 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KM388_25090 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KM388_25125 PF09335 SNARE associated Golgi protein KM388_25135 PF17969 L,D-transpeptidase C-terminal domain KM388_25135 PF03734 L,D-transpeptidase catalytic domain KM388_25140 PF00072 Response regulator receiver domain KM388_25140 PF00486 Transcriptional regulatory protein, C terminal KM388_25145 PF00512 His Kinase A (phospho-acceptor) domain KM388_25145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_25145 PF00989 PAS fold KM388_25145 PF16736 Single Cache-like KM388_25155 PF09334 tRNA synthetases class I (M) KM388_25155 PF08264 Anticodon-binding domain of tRNA KM388_25165 PF02743 Cache domain KM388_25165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_25165 PF00672 HAMP domain KM388_25170 PF01883 Iron-sulfur cluster assembly protein KM388_25175 PF07504 Fungalysin/Thermolysin Propeptide Motif KM388_25175 PF02868 Thermolysin metallopeptidase, alpha-helical domain KM388_25175 PF01447 Thermolysin metallopeptidase, catalytic domain KM388_25175 PF03413 Peptidase propeptide and YPEB domain KM388_25180 PF02678 Pirin KM388_25180 PF17954 Quercetinase C-terminal cupin domain KM388_25185 PF01047 MarR family KM388_25195 PF00999 Sodium/hydrogen exchanger family KM388_25200 PF02080 TrkA-C domain KM388_25205 PF01235 Sodium:alanine symporter family KM388_25210 PF00210 Ferritin-like domain KM388_25225 PF03641 Possible lysine decarboxylase KM388_25235 PF00210 Ferritin-like domain KM388_25245 PF01773 Na+ dependent nucleoside transporter N-terminus KM388_25245 PF07662 Na+ dependent nucleoside transporter C-terminus KM388_25250 PF01773 Na+ dependent nucleoside transporter N-terminus KM388_25250 PF07662 Na+ dependent nucleoside transporter C-terminus KM388_25255 PF01235 Sodium:alanine symporter family KM388_25260 PF01235 Sodium:alanine symporter family KM388_25265 PF13460 NAD(P)H-binding KM388_25280 PF00248 Aldo/keto reductase family KM388_25285 PF07690 Major Facilitator Superfamily KM388_25290 PF01638 HxlR-like helix-turn-helix KM388_25295 PF07849 Protein of unknown function (DUF1641) KM388_25300 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_25305 PF01479 S4 domain KM388_25305 PF00579 tRNA synthetases class I (W and Y) KM388_25310 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KM388_25310 PF01565 FAD binding domain KM388_25320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KM388_25320 PF00672 HAMP domain KM388_25320 PF17202 Single cache domain 3 KM388_25330 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KM388_25335 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KM388_25350 PF13302 Acetyltransferase (GNAT) domain KM388_25355 PF06146 Phosphate-starvation-inducible E KM388_25370 PF00005 ABC transporter KM388_25375 PF01032 FecCD transport family KM388_25380 PF01032 FecCD transport family KM388_25390 PF00072 Response regulator receiver domain KM388_25390 PF00486 Transcriptional regulatory protein, C terminal KM388_25400 PF01668 SmpB protein KM388_25405 PF00773 RNB domain KM388_25405 PF17876 Cold shock domain KM388_25405 PF00575 S1 RNA binding domain KM388_25405 PF08206 Ribonuclease B OB domain KM388_25410 PF12146 Serine aminopeptidase, S33 KM388_25415 PF03840 Preprotein translocase SecG subunit KM388_25420 PF04172 LrgB-like family KM388_25425 PF03788 LrgA family KM388_25430 PF01156 Inosine-uridine preferring nucleoside hydrolase KM388_25520 PF04860 Phage portal protein KM388_25540 PF02899 Phage integrase, N-terminal SAM-like domain KM388_25540 PF00589 Phage integrase family KM388_25545 PF00113 Enolase, C-terminal TIM barrel domain KM388_25545 PF03952 Enolase, N-terminal domain KM388_25550 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KM388_25550 PF01676 Metalloenzyme superfamily KM388_25555 PF00121 Triosephosphate isomerase KM388_25560 PF00162 Phosphoglycerate kinase KM388_25565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KM388_25565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KM388_25570 PF04198 Putative sugar-binding domain KM388_25580 PF00309 Sigma-54 factor, Activator interacting domain (AID) KM388_25580 PF04963 Sigma-54 factor, core binding domain KM388_25580 PF04552 Sigma-54, DNA binding domain KM388_25600 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM388_25605 PF07451 Stage V sporulation protein AD (SpoVAD) KM388_25610 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KM388_25620 PF04239 Protein of unknown function (DUF421) KM388_25625 PF00574 Clp protease KM388_25630 PF00381 PTS HPr component phosphorylation site KM388_25635 PF14527 WhiA LAGLIDADG-like domain KM388_25635 PF02650 WhiA C-terminal HTH domain KM388_25635 PF10298 WhiA N-terminal LAGLIDADG-like domain KM388_25640 PF01933 Uncharacterised protein family UPF0052 KM388_25645 PF03668 P-loop ATPase protein family KM388_25650 PF00293 NUDIX domain KM388_25660 PF07992 Pyridine nucleotide-disulphide oxidoreductase KM388_25670 PF14602 Hexapeptide repeat of succinyl-transferase KM388_25675 PF13419 Haloacid dehalogenase-like hydrolase KM388_25680 PF01790 Prolipoprotein diacylglyceryl transferase KM388_25685 PF07475 HPr Serine kinase C-terminal domain KM388_25685 PF02603 HPr Serine kinase N terminus KM388_25690 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV KM388_25700 PF17755 UvrA DNA-binding domain KM388_25700 PF17760 UvrA interaction domain KM388_25700 PF00005 ABC transporter KM388_25705 PF17757 UvrB interaction domain KM388_25705 PF00271 Helicase conserved C-terminal domain KM388_25705 PF04851 Type III restriction enzyme, res subunit KM388_25705 PF02151 UvrB/uvrC motif KM388_25705 PF12344 Ultra-violet resistance protein B KM388_25710 PF01385 Probable transposase KM388_25710 PF07282 Putative transposase DNA-binding domain KM388_25710 PF12323 Helix-turn-helix domain KM388_25725 PF07739 TipAS antibiotic-recognition domain KM388_25725 PF13411 MerR HTH family regulatory protein KM388_25750 PF03601 Conserved hypothetical protein 698 KM388_25755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_25755 PF03466 LysR substrate binding domain KM388_25760 PF13411 MerR HTH family regulatory protein KM388_25765 PF03358 NADPH-dependent FMN reductase KM388_25770 PF00005 ABC transporter KM388_25770 PF12848 ABC transporter KM388_25775 PF01906 Putative heavy-metal-binding KM388_25780 PF00664 ABC transporter transmembrane region KM388_25780 PF00005 ABC transporter KM388_25785 PF17820 PDZ domain KM388_25790 PF17820 PDZ domain KM388_25790 PF03572 Peptidase family S41 KM388_25790 PF01471 Putative peptidoglycan binding domain KM388_25795 PF02687 FtsX-like permease family KM388_25795 PF18075 FtsX extracellular domain KM388_25800 PF00005 ABC transporter KM388_25805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KM388_25815 PF07516 SecA Wing and Scaffold domain KM388_25815 PF02810 SEC-C motif KM388_25815 PF07517 SecA DEAD-like domain KM388_25815 PF01043 SecA preprotein cross-linking domain KM388_25820 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KM388_25820 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KM388_25825 PF00313 'Cold-shock' DNA-binding domain KM388_25840 PF00877 NlpC/P60 family KM388_25840 PF01476 LysM domain KM388_25845 PF01638 HxlR-like helix-turn-helix KM388_25850 PF02645 Uncharacterised protein, DegV family COG1307 KM388_25855 PF09186 Domain of unknown function (DUF1949) KM388_25855 PF01205 Uncharacterized protein family UPF0029 KM388_25860 PF03816 Cell envelope-related transcriptional attenuator domain KM388_25865 PF02350 UDP-N-acetylglucosamine 2-epimerase KM388_25870 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM388_25870 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM388_25870 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM388_25875 PF00953 Glycosyl transferase family 4 KM388_25880 PF01522 Polysaccharide deacetylase KM388_25885 PF00158 Sigma-54 interaction domain KM388_25885 PF00874 PRD domain KM388_25885 PF03610 PTS system fructose IIA component KM388_25895 PF02417 Chromate transporter KM388_25900 PF04794 YdjC-like protein KM388_25905 PF02056 Family 4 glycosyl hydrolase KM388_25905 PF11975 Family 4 glycosyl hydrolase C-terminal domain KM388_25910 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KM388_25915 PF02378 Phosphotransferase system, EIIC KM388_25920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM388_25930 PF02675 S-adenosylmethionine decarboxylase KM388_25935 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KM388_25940 PF02378 Phosphotransferase system, EIIC KM388_25945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KM388_25950 PF00375 Sodium:dicarboxylate symporter family KM388_25960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KM388_25970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KM388_25970 PF03466 LysR substrate binding domain KM388_25990 PF01654 Cytochrome bd terminal oxidase subunit I KM388_25995 PF02322 Cytochrome bd terminal oxidase subunit II KM388_26000 PF02040 Arsenical pump membrane protein KM388_26005 PF13667 ThiC-associated domain KM388_26005 PF01964 Radical SAM ThiC family KM388_26010 PF02652 L-lactate permease KM388_26020 PF09988 Uncharacterized metal-binding protein (DUF2227) KM388_26030 PF00884 Sulfatase KM388_26035 PF01063 Amino-transferase class IV KM388_26045 PF07662 Na+ dependent nucleoside transporter C-terminus KM388_26045 PF01773 Na+ dependent nucleoside transporter N-terminus KM388_26060 PF02028 BCCT, betaine/carnitine/choline family transporter KM388_26065 PF01476 LysM domain KM388_26065 PF06725 3D domain KM388_26090 PF04434 SWIM zinc finger KM388_26095 PF12419 SNF2 Helicase protein KM388_26095 PF00271 Helicase conserved C-terminal domain KM388_26095 PF00176 SNF2 family N-terminal domain KM388_26125 PF04545 Sigma-70, region 4 KM388_26125 PF04542 Sigma-70 region 2 KM388_26130 PF04893 Yip1 domain KM388_26135 PF02687 FtsX-like permease family KM388_26135 PF12704 MacB-like periplasmic core domain KM388_26140 PF00005 ABC transporter KM388_26160 PF07690 Major Facilitator Superfamily KM388_26175 PF16736 Single Cache-like KM388_26175 PF00989 PAS fold KM388_26175 PF00512 His Kinase A (phospho-acceptor) domain KM388_26175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_26180 PF00072 Response regulator receiver domain KM388_26180 PF00486 Transcriptional regulatory protein, C terminal KM388_26185 PF16363 GDP-mannose 4,6 dehydratase KM388_26190 PF03816 Cell envelope-related transcriptional attenuator domain KM388_26195 PF07977 FabA-like domain KM388_26200 PF02350 UDP-N-acetylglucosamine 2-epimerase KM388_26205 PF08239 Bacterial SH3 domain KM388_26205 PF00005 ABC transporter KM388_26210 PF01061 ABC-2 type transporter KM388_26215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM388_26215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM388_26215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM388_26260 PF12116 Stage III sporulation protein D KM388_26275 PF01551 Peptidase family M23 KM388_26285 PF00005 ABC transporter KM388_26295 PF08486 Stage II sporulation protein KM388_26300 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KM388_26310 PF06612 Protein of unknown function (DUF1146) KM388_26315 PF00361 Proton-conducting membrane transporter KM388_26320 PF00361 Proton-conducting membrane transporter KM388_26325 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KM388_26325 PF00361 Proton-conducting membrane transporter KM388_26325 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus KM388_26330 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KM388_26335 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KM388_26345 PF00146 NADH dehydrogenase KM388_26350 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KM388_26355 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KM388_26360 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KM388_26365 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KM388_26370 PF00563 EAL domain KM388_26370 PF00990 Diguanylate cyclase, GGDEF domain KM388_26370 PF03707 Bacterial signalling protein N terminal repeat KM388_26385 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KM388_26385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KM388_26390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM388_26390 PF02874 ATP synthase alpha/beta family, beta-barrel domain KM388_26395 PF00231 ATP synthase KM388_26400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM388_26400 PF00306 ATP synthase alpha/beta chain, C terminal domain KM388_26400 PF02874 ATP synthase alpha/beta family, beta-barrel domain KM388_26405 PF00213 ATP synthase delta (OSCP) subunit KM388_26410 PF00430 ATP synthase B/B' CF(0) KM388_26415 PF00137 ATP synthase subunit C KM388_26420 PF00119 ATP synthase A chain KM388_26425 PF03899 ATP synthase I chain KM388_26445 PF00464 Serine hydroxymethyltransferase KM388_26450 PF04260 Protein of unknown function (DUF436) KM388_26455 PF02502 Ribose/Galactose Isomerase KM388_26460 PF01451 Low molecular weight phosphotyrosine protein phosphatase KM388_26465 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KM388_26470 PF07681 DoxX KM388_26475 PF01613 Flavin reductase like domain KM388_26485 PF02659 Putative manganese efflux pump KM388_26490 PF01300 Telomere recombination KM388_26490 PF03481 Putative GTP-binding controlling metal-binding KM388_26500 PF09551 Stage II sporulation protein R (spore_II_R) KM388_26505 PF13847 Methyltransferase domain KM388_26505 PF17827 PrmC N-terminal domain KM388_26510 PF03462 PCRF domain KM388_26510 PF00472 RF-1 domain KM388_26515 PF00265 Thymidine kinase KM388_26520 PF01197 Ribosomal protein L31 KM388_26525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KM388_26525 PF07498 Rho termination factor, N-terminal domain KM388_26525 PF07497 Rho termination factor, RNA-binding domain KM388_26530 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KM388_26535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KM388_26540 PF01116 Fructose-bisphosphate aldolase class-II KM388_26545 PF00072 Response regulator receiver domain KM388_26550 PF10740 Domain of unknown function (DUF2529) KM388_26555 PF06418 CTP synthase N-terminus KM388_26555 PF00117 Glutamine amidotransferase class-I KM388_26560 PF05066 HB1, ASXL, restriction endonuclease HTH domain KM388_26570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM388_26570 PF02770 Acyl-CoA dehydrogenase, middle domain KM388_26570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM388_26575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KM388_26575 PF02770 Acyl-CoA dehydrogenase, middle domain KM388_26575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KM388_26580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KM388_26580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KM388_26585 PF02803 Thiolase, C-terminal domain KM388_26585 PF00108 Thiolase, N-terminal domain KM388_26590 PF02754 Cysteine-rich domain KM388_26590 PF13183 4Fe-4S dicluster domain KM388_26595 PF13091 PLD-like domain KM388_26600 PF03851 UV-endonuclease UvdE KM388_26605 PF00563 EAL domain KM388_26605 PF00990 Diguanylate cyclase, GGDEF domain KM388_26605 PF03707 Bacterial signalling protein N terminal repeat KM388_26625 PF00196 Bacterial regulatory proteins, luxR family KM388_26625 PF00072 Response regulator receiver domain KM388_26630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_26630 PF07730 Histidine kinase KM388_26640 PF00005 ABC transporter KM388_26645 PF00557 Metallopeptidase family M24 KM388_26655 PF02225 PA domain KM388_26655 PF04389 Peptidase family M28 KM388_26675 PF04542 Sigma-70 region 2 KM388_26675 PF08281 Sigma-70, region 4 KM388_26680 PF00750 tRNA synthetases class I (R) KM388_26680 PF05746 DALR anticodon binding domain KM388_26680 PF03485 Arginyl tRNA synthetase N terminal domain KM388_26685 PF09148 Domain of unknown function (DUF1934) KM388_26690 PF02016 LD-carboxypeptidase N-terminal domain KM388_26690 PF17676 LD-carboxypeptidase C-terminal domain KM388_26705 PF00491 Arginase family KM388_26710 PF17284 Spermidine synthase tetramerisation domain KM388_26715 PF07690 Major Facilitator Superfamily KM388_26720 PF13411 MerR HTH family regulatory protein KM388_26725 PF03009 Glycerophosphoryl diester phosphodiesterase family KM388_26730 PF00912 Transglycosylase KM388_26730 PF00905 Penicillin binding protein transpeptidase domain KM388_26735 PF08741 YwhD family KM388_26740 PF02163 Peptidase family M50 KM388_26745 PF01361 Tautomerase enzyme KM388_26750 PF01966 HD domain KM388_26755 PF01497 Periplasmic binding protein KM388_26760 PF00005 ABC transporter KM388_26765 PF01032 FecCD transport family KM388_26770 PF01032 FecCD transport family KM388_26775 PF07293 Protein of unknown function (DUF1450) KM388_26790 PF03099 Biotin/lipoate A/B protein ligase family KM388_26795 PF01515 Phosphate acetyl/butaryl transferase KM388_26800 PF06778 Chlorite dismutase KM388_26805 PF07943 Penicillin-binding protein 5, C-terminal domain KM388_26805 PF00768 D-alanyl-D-alanine carboxypeptidase KM388_26810 PF07486 Cell Wall Hydrolase KM388_26815 PF09671 Spore coat protein (Spore_GerQ) KM388_26820 PF04241 Protein of unknown function (DUF423) KM388_26830 PF02254 TrkA-N domain KM388_26830 PF07885 Ion channel KM388_26835 PF00860 Permease family KM388_26845 PF12823 Domain of unknown function (DUF3817) KM388_26850 PF03167 Uracil DNA glycosylase superfamily KM388_26855 PF12679 ABC-2 family transporter protein KM388_26860 PF00005 ABC transporter KM388_26865 PF13472 GDSL-like Lipase/Acylhydrolase family KM388_26870 PF00356 Bacterial regulatory proteins, lacI family KM388_26870 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KM388_26880 PF00742 Homoserine dehydrogenase KM388_26880 PF03447 Homoserine dehydrogenase, NAD binding domain KM388_26880 PF01842 ACT domain KM388_26885 PF04204 Homoserine O-succinyltransferase KM388_26890 PF01053 Cys/Met metabolism PLP-dependent enzyme KM388_26900 PF13419 Haloacid dehalogenase-like hydrolase KM388_26905 PF00027 Cyclic nucleotide-binding domain KM388_26910 PF02525 Flavodoxin-like fold KM388_26915 PF00196 Bacterial regulatory proteins, luxR family KM388_26915 PF00072 Response regulator receiver domain KM388_26925 PF08543 Phosphomethylpyrimidine kinase KM388_26930 PF07694 5TMR of 5TMR-LYT KM388_26930 PF00990 Diguanylate cyclase, GGDEF domain KM388_26935 PF04328 Selenoprotein, putative KM388_26940 PF02554 Carbon starvation protein CstA KM388_26940 PF13722 5TM C-terminal transporter carbon starvation CstA KM388_26945 PF04397 LytTr DNA-binding domain KM388_26945 PF00072 Response regulator receiver domain KM388_26950 PF07690 Major Facilitator Superfamily KM388_26955 PF03808 Glycosyl transferase WecB/TagA/CpsF family KM388_26970 PF03458 UPF0126 domain KM388_26985 PF03061 Thioesterase superfamily KM388_26995 PF00535 Glycosyl transferase family 2 KM388_27000 PF00005 ABC transporter KM388_27000 PF12848 ABC transporter KM388_27020 PF00535 Glycosyl transferase family 2 KM388_27025 PF00440 Bacterial regulatory proteins, tetR family KM388_27030 PF00873 AcrB/AcrD/AcrF family KM388_27035 PF01625 Peptide methionine sulfoxide reductase KM388_27035 PF01641 SelR domain KM388_27040 PF01594 AI-2E family transporter KM388_27045 PF04172 LrgB-like family KM388_27050 PF03788 LrgA family KM388_27055 PF00072 Response regulator receiver domain KM388_27055 PF04397 LytTr DNA-binding domain KM388_27060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_27060 PF06580 Histidine kinase KM388_27060 PF13492 GAF domain KM388_27060 PF07694 5TMR of 5TMR-LYT KM388_27065 PF07690 Major Facilitator Superfamily KM388_27070 PF02028 BCCT, betaine/carnitine/choline family transporter KM388_27075 PF02898 Nitric oxide synthase, oxygenase domain KM388_27080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KM388_27080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KM388_27090 PF02293 AmiS/UreI family transporter KM388_27100 PF16363 GDP-mannose 4,6 dehydratase KM388_27105 PF03006 Haemolysin-III related KM388_27115 PF00270 DEAD/DEAH box helicase KM388_27115 PF03880 DbpA RNA binding domain KM388_27115 PF00271 Helicase conserved C-terminal domain KM388_27125 PF00478 IMP dehydrogenase / GMP reductase domain KM388_27130 PF08439 Oligopeptidase F KM388_27130 PF01432 Peptidase family M3 KM388_27140 PF02590 Predicted SPOUT methyltransferase KM388_27150 PF13180 PDZ domain KM388_27155 PF00753 Metallo-beta-lactamase superfamily KM388_27160 PF09648 YycH protein KM388_27165 PF07435 YycH protein KM388_27170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KM388_27170 PF00512 His Kinase A (phospho-acceptor) domain KM388_27170 PF13426 PAS domain KM388_27170 PF00672 HAMP domain KM388_27175 PF00486 Transcriptional regulatory protein, C terminal KM388_27175 PF00072 Response regulator receiver domain KM388_27200 PF00709 Adenylosuccinate synthetase KM388_27205 PF03796 DnaB-like helicase C terminal domain KM388_27205 PF00772 DnaB-like helicase N terminal domain KM388_27210 PF01281 Ribosomal protein L9, N-terminal domain KM388_27210 PF03948 Ribosomal protein L9, C-terminal domain KM388_27215 PF01368 DHH family KM388_27215 PF02272 DHHA1 domain KM388_27220 PF09991 Predicted membrane protein (DUF2232) KM388_27225 PF01084 Ribosomal protein S18 KM388_27230 PF00436 Single-strand binding protein family KM388_27235 PF01250 Ribosomal protein S6 KM388_27240 PF06071 Protein of unknown function (DUF933) KM388_27240 PF01926 50S ribosome-binding GTPase KM388_27245 PF06107 Bacterial protein of unknown function (DUF951) KM388_27250 PF00924 Mechanosensitive ion channel KM388_27255 PF06866 Protein of unknown function (DUF1256) KM388_27260 PF02195 ParB-like nuclease domain KM388_27260 PF17762 HTH domain found in ParB protein KM388_27265 PF13614 AAA domain KM388_27270 PF17762 HTH domain found in ParB protein KM388_27270 PF02195 ParB-like nuclease domain KM388_27275 PF02527 rRNA small subunit methyltransferase G KM388_27280 PF01134 Glucose inhibited division protein A KM388_27280 PF13932 GidA associated domain KM388_27285 PF01926 50S ribosome-binding GTPase KM388_27285 PF10396 GTP-binding protein TrmE N-terminus KM388_27285 PF12631 MnmE helical domain KM388_27290 PF01424 R3H domain KM388_27290 PF14804 Jag N-terminus KM388_27295 PF02096 60Kd inner membrane protein KM388_27300 PF00825 Ribonuclease P KM388_27305 PF00468 Ribosomal protein L34 KM388_27315 PF08378 Nuclease-related domain KM388_27355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KM388_27435 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KM388_27480 PF13427 Domain of unknown function (DUF4111) KM388_27480 PF18765 Polymerase beta, Nucleotidyltransferase KM388_27505 PF01609 Transposase DDE domain KM388_27510 PF01609 Transposase DDE domain KM388_27535 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KM388_27535 PF17854 FtsK alpha domain KM388_27535 PF09397 Ftsk gamma domain KM388_27535 PF01580 FtsK/SpoIIIE family KM388_27550 PF00091 Tubulin/FtsZ family, GTPase domain KM388_27750 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) KM388_27765 PF04235 Protein of unknown function (DUF418) KM388_27785 PF00395 S-layer homology domain KM388_27790 PF01569 PAP2 superfamily KM388_27805 PF00535 Glycosyl transferase family 2 KM388_27810 PF00483 Nucleotidyl transferase KM388_27815 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KM388_27815 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KM388_27815 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KM388_27855 PF03497 Anthrax toxin LF subunit KM388_27855 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain KM388_27875 PF00874 PRD domain KM388_27875 PF05043 Mga helix-turn-helix domain KM388_27875 PF08279 HTH domain KM388_27895 PF13700 Domain of unknown function (DUF4158) KM388_27895 PF01526 Tn3 transposase DDE domain KM388_27900 PF00239 Resolvase, N terminal domain KM388_27900 PF02796 Helix-turn-helix domain of resolvase KM388_27905 PF03845 Spore germination protein KM388_27910 PF03323 Bacillus/Clostridium GerA spore germination protein KM388_27915 PF05504 Spore germination B3/ GerAC like, C-terminal KM388_27925 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 KM388_27925 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain KM388_27925 PF07691 PA14 domain KM388_27925 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 KM388_27930 PF01022 Bacterial regulatory protein, arsR family KM388_27955 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain KM388_27955 PF09156 Anthrax toxin lethal factor, middle domain KM388_27970 PF18277 AbrB C-terminal domain KM388_27970 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KM388_27980 PF00589 Phage integrase family KM388_27980 PF02899 Phage integrase, N-terminal SAM-like domain KM388_28010 PF04740 LXG domain of WXG superfamily KM388_28010 PF14436 Bacterial EndoU nuclease KM388_28035 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment KM388_28040 PF00589 Phage integrase family KM388_28065 PF18801 response regulator aspartate phosphatase H, N terminal KM388_28075 PF17209 Hfq protein KM388_28080 PF01022 Bacterial regulatory protein, arsR family KM388_28085 PF02600 Disulfide bond formation protein DsbB KM388_28100 PF00565 Staphylococcal nuclease homologue KM388_28105 PF01751 Toprim domain KM388_28105 PF01131 DNA topoisomerase KM388_28105 PF13342 C-terminal repeat of topoisomerase KM388_28115 PF08708 Primase C terminal 1 (PriCT-1) KM388_28135 PF17362 Family of unknown function KM388_28150 PF17631 Family of unknown function (DUF5512) KM388_28190 PF00437 Type II/IV secretion system protein KM388_28220 PF04956 TrbC/VIRB2 family KM388_28235 PF12696 TraM recognition site of TraD and TraG KM388_28280 PF17632 Family of unknown function (DUF5513) KM388_28305 PF17633 Family of unknown function (DUF5514) KM388_28310 PF17630 Family of unknown function (DUF5511) KM388_28315 PF18840 Large polyvalent protein associated domain 25 KM388_28330 PF13154 Protein of unknown function (DUF3991) KM388_28335 PF01751 Toprim domain KM388_28335 PF01131 DNA topoisomerase KM388_28340 PF01751 Toprim domain KM388_28340 PF01131 DNA topoisomerase KM388_28375 PF17443 Uncharacterized protein pXO2-72 KM388_28395 PF11798 IMS family HHH motif KM388_28395 PF11799 impB/mucB/samB family C-terminal domain KM388_28395 PF00817 impB/mucB/samB family KM388_28400 PF13411 MerR HTH family regulatory protein KM388_28400 PF13152 Protein of unknown function (DUF3967) KM388_28405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KM388_28435 PF05043 Mga helix-turn-helix domain KM388_28435 PF00874 PRD domain KM388_28435 PF08280 M protein trans-acting positive regulator (MGA) HTH domain KM388_28445 PF01810 LysE type translocator KM388_28455 PF00874 PRD domain KM388_28455 PF08279 HTH domain KM388_28455 PF05043 Mga helix-turn-helix domain KM388_28460 PF09385 Histidine kinase N terminal KM388_28470 PF10502 Signal peptidase, peptidase S26 KM388_28485 PF01022 Bacterial regulatory protein, arsR family KM388_28495 PF08245 Mur ligase middle domain KM388_28500 PF14102 Capsule biosynthesis CapC KM388_28505 PF09587 Bacterial capsule synthesis protein PGA_cap KM388_28525 PF08280 M protein trans-acting positive regulator (MGA) HTH domain KM388_28525 PF05043 Mga helix-turn-helix domain KM388_28535 PF01569 PAP2 superfamily KM388_28545 PF00440 Bacterial regulatory proteins, tetR family KM388_28550 PF04463 Protein of unknown function (DUF523) KM388_28555 PF02517 CPBP intramembrane metalloprotease KM388_28560 PF01906 Putative heavy-metal-binding KM388_28575 PF01520 N-acetylmuramoyl-L-alanine amidase KM388_28575 PF00395 S-layer homology domain KM388_28590 PF13614 AAA domain