BF31_1 SM00448 cheY-homologous receiver domain BF31_1 SM00862 Transcriptional regulatory protein, C terminal BF31_1017 SM01251 BF31_1017 BF31_1020 SM00646 BF31_1020 BF31_1026 SM00382 ATPases associated with a variety of cellular activities BF31_1027 SM00382 ATPases associated with a variety of cellular activities BF31_1029 SM00662 RNA polymerases D BF31_1033 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_104 SM00829 Enoylreductase BF31_1045 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF31_1046 SM01374 BF31_1046 BF31_1050 SM00322 K homology RNA-binding domain BF31_1053 SM01382 BF31_1053 BF31_1053 SM01383 BF31_1053 BF31_1057 SM01403 BF31_1057 BF31_1059 SM00838 Elongation factor G C-terminus BF31_1059 SM00889 Elongation factor G, domain IV BF31_1063 SM00663 RNA polymerase I subunit A N-terminus BF31_1069 SM00649 Ribosomal protein L11/L12 BF31_1070 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF31_1072 SM00421 helix_turn_helix, Lux Regulon BF31_1076 SM00535 Ribonuclease III family BF31_1077 SM00840 BF31_1077 BF31_1082 SM00670 Large family of predicted nucleotide-binding domains BF31_1084 SM00382 ATPases associated with a variety of cellular activities BF31_1085 SM00382 ATPases associated with a variety of cellular activities BF31_1085 SM01086 C-terminal, D2-small domain, of ClpB protein BF31_1095 SM00530 Helix-turn-helix XRE-family like proteins BF31_1097 SM00905 Dihydroneopterin aldolase BF31_1105 SM00382 ATPases associated with a variety of cellular activities BF31_1107 SM00977 TilS substrate C-terminal domain BF31_1108 SM00331 Sigma factor PP2C-like phosphatases BF31_1108 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF31_111 SM00387 Histidine kinase-like ATPases BF31_111 SM00388 His Kinase A (phosphoacceptor) domain BF31_111 SM00448 cheY-homologous receiver domain BF31_1111 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_1115 SM00363 S4 RNA-binding domain BF31_1118 SM00966 SpoVT / AbrB like domain BF31_1119 SM00487 DEAD-like helicases superfamily BF31_1119 SM00490 helicase superfamily c-terminal domain BF31_1119 SM00982 BF31_1119 BF31_1119 SM01058 CarD-like/TRCF domain BF31_112 SM00138 Methyltransferase, chemotaxis proteins BF31_1122 SM01400 BF31_1122 BF31_113 SM00331 Sigma factor PP2C-like phosphatases BF31_113 SM00448 cheY-homologous receiver domain BF31_1131 SM00650 Ribosomal RNA adenine dimethylases BF31_1132 SM00493 BF31_1132 BF31_1135 SM00966 SpoVT / AbrB like domain BF31_1153 SM00493 BF31_1153 BF31_1155 SM00382 ATPases associated with a variety of cellular activities BF31_1165 SM00936 Penicillin-binding protein 5, C-terminal domain BF31_1166 SM00116 Domain in cystathionine beta-synthase and other proteins. BF31_1166 SM01240 BF31_1166 BF31_1175 SM00434 DNA Topoisomerase IV BF31_1176 SM00387 Histidine kinase-like ATPases BF31_1176 SM00433 TopoisomeraseII BF31_1179 SM00480 DNA polymerase III beta subunit BF31_1180 SM00382 ATPases associated with a variety of cellular activities BF31_1180 SM00760 Bacterial dnaA protein helix-turn-helix domain BF31_1184 SM00393 Putative single-stranded nucleic acids-binding domain BF31_1184 SM01245 BF31_1184 BF31_1186 SM01228 BF31_1186 BF31_1188 SM00470 ParB-like nuclease domain BF31_1190 SM00470 ParB-like nuclease domain BF31_1199 SM00267 diguanylate cyclase BF31_1202 SM00788 Adenylosuccinate synthetase BF31_1207 SM00448 cheY-homologous receiver domain BF31_1207 SM00862 Transcriptional regulatory protein, C terminal BF31_1208 SM00091 PAS domain BF31_1208 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_1208 SM00387 Histidine kinase-like ATPases BF31_1208 SM00388 His Kinase A (phosphoacceptor) domain BF31_1211 SM00849 Metallo-beta-lactamase superfamily BF31_1212 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF31_1217 SM01240 BF31_1217 BF31_1219 SM00487 DEAD-like helicases superfamily BF31_1219 SM00490 helicase superfamily c-terminal domain BF31_1230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF31_1230 SM00387 Histidine kinase-like ATPases BF31_1231 SM00448 cheY-homologous receiver domain BF31_1231 SM00850 LytTr DNA-binding domain BF31_1243 SM00382 ATPases associated with a variety of cellular activities BF31_1248 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_125 SM00460 Transglutaminase/protease-like homologues BF31_1254 SM00448 cheY-homologous receiver domain BF31_1254 SM00850 LytTr DNA-binding domain BF31_1257 SM00267 diguanylate cyclase BF31_1259 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF31_1261 SM00421 helix_turn_helix, Lux Regulon BF31_1261 SM00448 cheY-homologous receiver domain BF31_1263 SM00100 Cyclic nucleotide-monophosphate binding domain BF31_1270 SM00354 helix_turn _helix lactose operon repressor BF31_1272 SM00382 ATPases associated with a variety of cellular activities BF31_1274 SM00986 Uracil DNA glycosylase superfamily BF31_1274 SM00987 UreE urease accessory protein, C-terminal domain BF31_1283 SM00936 Penicillin-binding protein 5, C-terminal domain BF31_1293 SM00382 ATPases associated with a variety of cellular activities BF31_1295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_1301 SM00422 helix_turn_helix, mercury resistance BF31_1309 SM00836 DALR anticodon binding domain BF31_1309 SM01016 Arginyl tRNA synthetase N terminal dom BF31_1319 SM00382 ATPases associated with a variety of cellular activities BF31_1321 SM00387 Histidine kinase-like ATPases BF31_1322 SM00421 helix_turn_helix, Lux Regulon BF31_1322 SM00448 cheY-homologous receiver domain BF31_1323 SM00530 Helix-turn-helix XRE-family like proteins BF31_1326 SM00052 Putative diguanylate phosphodiesterase BF31_1326 SM00267 diguanylate cyclase BF31_1328 SM00155 Phospholipase D. Active site motifs. BF31_1338 SM00448 cheY-homologous receiver domain BF31_1342 SM00357 Cold shock protein domain BF31_1342 SM00382 ATPases associated with a variety of cellular activities BF31_1342 SM00959 Rho termination factor, N-terminal domain BF31_1345 SM00937 BF31_1345 BF31_1352 SM00903 Flavin reductase like domain BF31_1355 SM00226 Low molecular weight phosphatase family BF31_1368 SM00382 ATPases associated with a variety of cellular activities BF31_1372 SM00052 Putative diguanylate phosphodiesterase BF31_1372 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF31_1372 SM00091 PAS domain BF31_1372 SM00267 diguanylate cyclase BF31_138 SM01120 BF31_138 BF31_1389 SM00850 LytTr DNA-binding domain BF31_1390 SM00382 ATPases associated with a variety of cellular activities BF31_1402 SM00984 UDP binding domain BF31_1404 SM00287 Bacterial SH3 domain homologues BF31_1404 SM00382 ATPases associated with a variety of cellular activities BF31_1406 SM00984 UDP binding domain BF31_1409 SM00382 ATPases associated with a variety of cellular activities BF31_1410 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF31_1440 SM00287 Bacterial SH3 domain homologues BF31_1441 SM00287 Bacterial SH3 domain homologues BF31_1447 SM00287 Bacterial SH3 domain homologues BF31_145 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_1453 SM00487 DEAD-like helicases superfamily BF31_1453 SM00490 helicase superfamily c-terminal domain BF31_1462 SM00382 ATPases associated with a variety of cellular activities BF31_1464 SM00530 Helix-turn-helix XRE-family like proteins BF31_1469 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_1469 SM00387 Histidine kinase-like ATPases BF31_1469 SM00388 His Kinase A (phosphoacceptor) domain BF31_1470 SM00448 cheY-homologous receiver domain BF31_1470 SM00862 Transcriptional regulatory protein, C terminal BF31_1480 SM00487 DEAD-like helicases superfamily BF31_1480 SM00490 helicase superfamily c-terminal domain BF31_1482 SM00357 Cold shock protein domain BF31_1484 SM00957 SecA DEAD-like domain BF31_1484 SM00958 SecA preprotein cross-linking domain BF31_1485 SM00937 BF31_1485 BF31_1487 SM00382 ATPases associated with a variety of cellular activities BF31_1489 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF31_1489 SM00245 tail specific protease BF31_1491 SM00382 ATPases associated with a variety of cellular activities BF31_1493 SM00382 ATPases associated with a variety of cellular activities BF31_1495 SM00422 helix_turn_helix, mercury resistance BF31_1498 SM00530 Helix-turn-helix XRE-family like proteins BF31_1501 SM00422 helix_turn_helix, mercury resistance BF31_1505 SM00487 DEAD-like helicases superfamily BF31_1505 SM00490 helicase superfamily c-terminal domain BF31_1513 SM00028 Tetratricopeptide repeats BF31_1533 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF31_1537 SM01192 BF31_1537 BF31_1537 SM01193 BF31_1537 BF31_1565 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_1565 SM00357 Cold shock protein domain BF31_1565 SM00955 BF31_1565 BF31_1567 SM00448 cheY-homologous receiver domain BF31_1567 SM00862 Transcriptional regulatory protein, C terminal BF31_1571 SM00382 ATPases associated with a variety of cellular activities BF31_1581 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_1582 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF31_1584 SM00363 S4 RNA-binding domain BF31_1591 SM01276 BF31_1591 BF31_1611 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_1615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_1615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_1619 SM00387 Histidine kinase-like ATPases BF31_1619 SM00388 His Kinase A (phosphoacceptor) domain BF31_1620 SM00448 cheY-homologous receiver domain BF31_1620 SM00862 Transcriptional regulatory protein, C terminal BF31_1625 SM00530 Helix-turn-helix XRE-family like proteins BF31_1639 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_1639 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_1648 SM00849 Metallo-beta-lactamase superfamily BF31_1665 SM00493 BF31_1665 BF31_1668 SM00382 ATPases associated with a variety of cellular activities BF31_1668 SM00930 BF31_1668 BF31_1672 SM00382 ATPases associated with a variety of cellular activities BF31_1683 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_1685 SM00855 Phosphoglycerate mutase family BF31_1688 SM00422 helix_turn_helix, mercury resistance BF31_1695 SM00420 helix_turn_helix, Deoxyribose operon repressor BF31_170 SM00422 helix_turn_helix, mercury resistance BF31_1708 SM00860 SMI1 / KNR4 family BF31_1713 SM00382 ATPases associated with a variety of cellular activities BF31_1723 SM00871 Bacterial transcription activator, effector binding domain BF31_1742 SM00479 BF31_1742 BF31_1743 SM01298 BF31_1743 BF31_1750 SM00344 helix_turn_helix ASNC type BF31_1752 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_176 SM00448 cheY-homologous receiver domain BF31_177 SM00091 PAS domain BF31_177 SM00387 Histidine kinase-like ATPases BF31_1785 SM00642 Alpha-amylase domain BF31_179 SM00860 SMI1 / KNR4 family BF31_1793 SM00357 Cold shock protein domain BF31_180 SM00860 SMI1 / KNR4 family BF31_1801 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF31_1802 SM00448 cheY-homologous receiver domain BF31_1802 SM00862 Transcriptional regulatory protein, C terminal BF31_1803 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_1803 SM00387 Histidine kinase-like ATPases BF31_1803 SM00388 His Kinase A (phosphoacceptor) domain BF31_1811 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_1811 SM00866 BF31_1811 BF31_1816 SM00382 ATPases associated with a variety of cellular activities BF31_1820 SM00387 Histidine kinase-like ATPases BF31_1821 SM00448 cheY-homologous receiver domain BF31_1821 SM00862 Transcriptional regulatory protein, C terminal BF31_1822 SM00342 helix_turn_helix, arabinose operon control protein BF31_1822 SM00871 Bacterial transcription activator, effector binding domain BF31_1823 SM00382 ATPases associated with a variety of cellular activities BF31_1833 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF31_1839 SM00448 cheY-homologous receiver domain BF31_1839 SM00862 Transcriptional regulatory protein, C terminal BF31_184 SM00382 ATPases associated with a variety of cellular activities BF31_1840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_1840 SM00387 Histidine kinase-like ATPases BF31_1840 SM00388 His Kinase A (phosphoacceptor) domain BF31_1842 SM00899 BF31_1842 BF31_1854 SM00894 Excalibur calcium-binding domain BF31_1858 SM01234 BF31_1858 BF31_1859 SM00947 Carbonic anhydrase BF31_1871 SM00382 ATPases associated with a variety of cellular activities BF31_1878 SM00387 Histidine kinase-like ATPases BF31_1878 SM00388 His Kinase A (phosphoacceptor) domain BF31_1879 SM00387 Histidine kinase-like ATPases BF31_1890 SM00852 Probable molybdopterin binding domain BF31_1893 SM00014 Acid phosphatase homologues BF31_1901 SM00382 ATPases associated with a variety of cellular activities BF31_1903 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_1907 SM00382 ATPases associated with a variety of cellular activities BF31_1922 SM00450 Rhodanese Homology Domain BF31_1926 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_1929 SM00852 Probable molybdopterin binding domain BF31_1936 SM01058 CarD-like/TRCF domain BF31_1941 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_1945 SM00363 S4 RNA-binding domain BF31_1946 SM00420 helix_turn_helix, Deoxyribose operon repressor BF31_1950 SM00642 Alpha-amylase domain BF31_1954 SM00849 Metallo-beta-lactamase superfamily BF31_1962 SM00843 BF31_1962 BF31_1973 SM00354 helix_turn _helix lactose operon repressor BF31_198 SM00646 BF31_198 BF31_1980 SM00248 ankyrin repeats BF31_1981 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_1981 SM00387 Histidine kinase-like ATPases BF31_1981 SM00388 His Kinase A (phosphoacceptor) domain BF31_1982 SM00448 cheY-homologous receiver domain BF31_1982 SM00862 Transcriptional regulatory protein, C terminal BF31_1985 SM00116 Domain in cystathionine beta-synthase and other proteins. BF31_1991 SM00363 S4 RNA-binding domain BF31_1994 SM00363 S4 RNA-binding domain BF31_1994 SM01390 BF31_1994 BF31_2 SM00387 Histidine kinase-like ATPases BF31_2 SM00388 His Kinase A (phosphoacceptor) domain BF31_20 SM00725 NEAr Transporter domain BF31_2003 SM00981 BF31_2003 BF31_2028 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF31_2028 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF31_2030 SM00530 Helix-turn-helix XRE-family like proteins BF31_2041 SM00849 Metallo-beta-lactamase superfamily BF31_2043 SM00116 Domain in cystathionine beta-synthase and other proteins. BF31_2050 SM00481 DNA polymerase alpha chain like domain BF31_2051 SM00919 Malic enzyme, NAD binding domain BF31_2051 SM01274 BF31_2051 BF31_2052 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_2061 SM01329 BF31_2061 BF31_2065 SM00448 cheY-homologous receiver domain BF31_2065 SM00862 Transcriptional regulatory protein, C terminal BF31_2066 SM00091 PAS domain BF31_2066 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_2066 SM00387 Histidine kinase-like ATPases BF31_2066 SM00388 His Kinase A (phosphoacceptor) domain BF31_2067 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF31_2067 SM00474 3'-5' exonuclease BF31_2067 SM00475 5'-3' exonuclease BF31_2067 SM00482 DNA polymerase A domain BF31_2068 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF31_2068 SM01232 BF31_2068 BF31_2071 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF31_2075 SM00382 ATPases associated with a variety of cellular activities BF31_2077 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF31_209 SM00635 Bacterial Ig-like domain 2 BF31_2092 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF31_2094 SM00873 B3/4 domain BF31_2094 SM00874 tRNA synthetase B5 domain BF31_2094 SM00896 Ferredoxin-fold anticodon binding domain BF31_2102 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF31_2102 SM00481 DNA polymerase alpha chain like domain BF31_2102 SM00483 DNA polymerase X family BF31_2103 SM00463 Small MutS-related domain BF31_2103 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF31_2103 SM00534 ATPase domain of DNA mismatch repair MUTS family BF31_2105 SM00363 S4 RNA-binding domain BF31_2107 SM00725 NEAr Transporter domain BF31_2108 SM00725 NEAr Transporter domain BF31_2109 SM00725 NEAr Transporter domain BF31_2112 SM00382 ATPases associated with a variety of cellular activities BF31_2116 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF31_2119 SM00448 cheY-homologous receiver domain BF31_2119 SM00862 Transcriptional regulatory protein, C terminal BF31_212 SM00957 SecA DEAD-like domain BF31_212 SM00958 SecA preprotein cross-linking domain BF31_2120 SM00387 Histidine kinase-like ATPases BF31_2120 SM00388 His Kinase A (phosphoacceptor) domain BF31_2121 SM00382 ATPases associated with a variety of cellular activities BF31_2134 SM00893 Electron transfer flavoprotein domain BF31_2135 SM00893 Electron transfer flavoprotein domain BF31_2137 SM00465 GIY-YIG type nucleases (URI domain) BF31_2148 SM00382 ATPases associated with a variety of cellular activities BF31_2153 SM00530 Helix-turn-helix XRE-family like proteins BF31_2157 SM00342 helix_turn_helix, arabinose operon control protein BF31_2157 SM00448 cheY-homologous receiver domain BF31_2159 SM00382 ATPases associated with a variety of cellular activities BF31_2160 SM00382 ATPases associated with a variety of cellular activities BF31_2168 SM00421 helix_turn_helix, Lux Regulon BF31_2175 SM00909 Sporulation and spore germination BF31_2187 SM00382 ATPases associated with a variety of cellular activities BF31_2187 SM00994 ClpX C4-type zinc finger BF31_2187 SM01086 C-terminal, D2-small domain, of ClpB protein BF31_2188 SM00382 ATPases associated with a variety of cellular activities BF31_2189 SM00382 ATPases associated with a variety of cellular activities BF31_2189 SM00464 Found in ATP-dependent protease La (LON) BF31_219 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_2192 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_2197 SM01004 Delta-aminolevulinic acid dehydratase BF31_2199 SM00257 Lysin motif BF31_221 SM00644 BF31_221 BF31_2217 SM01317 BF31_2217 BF31_2219 SM00448 cheY-homologous receiver domain BF31_2219 SM00862 Transcriptional regulatory protein, C terminal BF31_2221 SM00387 Histidine kinase-like ATPases BF31_2222 SM00382 ATPases associated with a variety of cellular activities BF31_2233 SM00257 Lysin motif BF31_2236 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_2241 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF31_2242 SM00382 ATPases associated with a variety of cellular activities BF31_2246 SM01323 BF31_2246 BF31_2255 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_2255 SM00954 Region found in RelA / SpoT proteins BF31_2261 SM00382 ATPases associated with a variety of cellular activities BF31_2265 SM00028 Tetratricopeptide repeats BF31_2272 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF31_2274 SM00732 Likely ribonuclease with RNase H fold. BF31_2293 SM00382 ATPases associated with a variety of cellular activities BF31_2298 SM00530 Helix-turn-helix XRE-family like proteins BF31_2308 SM00855 Phosphoglycerate mutase family BF31_2313 SM00098 Alkaline phosphatase homologues BF31_2315 SM00954 Region found in RelA / SpoT proteins BF31_2327 SM01103 BF31_2327 BF31_2329 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_2333 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF31_2335 SM00849 Metallo-beta-lactamase superfamily BF31_2341 SM00838 Elongation factor G C-terminus BF31_2343 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_2347 SM00271 DnaJ molecular chaperone homology domain BF31_2350 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_2356 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_236 SM00382 ATPases associated with a variety of cellular activities BF31_2363 SM00116 Domain in cystathionine beta-synthase and other proteins. BF31_2365 SM00400 zinc finger BF31_2365 SM00493 BF31_2365 BF31_2365 SM00766 DNA primase DnaG DnaB-binding BF31_2372 SM00487 DEAD-like helicases superfamily BF31_2372 SM00490 helicase superfamily c-terminal domain BF31_2373 SM00518 AP endonuclease family 2 BF31_2376 SM00382 ATPases associated with a variety of cellular activities BF31_238 SM00062 Bacterial periplasmic substrate-binding proteins BF31_238 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF31_2389 SM00382 ATPases associated with a variety of cellular activities BF31_239 SM00382 ATPases associated with a variety of cellular activities BF31_2398 SM00849 Metallo-beta-lactamase superfamily BF31_2400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_2405 SM01018 B12 binding domain BF31_241 SM00382 ATPases associated with a variety of cellular activities BF31_2416 SM00382 ATPases associated with a variety of cellular activities BF31_2423 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF31_2430 SM00487 DEAD-like helicases superfamily BF31_2430 SM00490 helicase superfamily c-terminal domain BF31_2436 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_2437 SM00382 ATPases associated with a variety of cellular activities BF31_2447 SM00354 helix_turn _helix lactose operon repressor BF31_2448 SM00450 Rhodanese Homology Domain BF31_2452 SM00529 Helix-turn-helix diphteria tox regulatory element BF31_2459 SM00841 Elongation factor P, C-terminal BF31_2459 SM01185 BF31_2459 BF31_2463 SM00382 ATPases associated with a variety of cellular activities BF31_247 SM01060 BF31_247 BF31_2473 SM00878 Biotin carboxylase C-terminal domain BF31_2480 SM00861 Transketolase, pyrimidine binding domain BF31_2481 SM00363 S4 RNA-binding domain BF31_2484 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF31_2485 SM00448 cheY-homologous receiver domain BF31_2490 SM00091 PAS domain BF31_2490 SM00382 ATPases associated with a variety of cellular activities BF31_2492 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF31_2496 SM00861 Transketolase, pyrimidine binding domain BF31_25 SM00849 Metallo-beta-lactamase superfamily BF31_2502 SM00062 Bacterial periplasmic substrate-binding proteins BF31_2502 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF31_2504 SM00382 ATPases associated with a variety of cellular activities BF31_2513 SM00849 Metallo-beta-lactamase superfamily BF31_2521 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF31_2528 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_2538 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_2538 SM00876 Biotin and Thiamin Synthesis associated domain BF31_2544 SM00704 CDGSH-type zinc finger. Function unknown. BF31_2548 SM00354 helix_turn _helix lactose operon repressor BF31_2567 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF31_2571 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_2574 SM00382 ATPases associated with a variety of cellular activities BF31_2575 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_2576 SM00936 Penicillin-binding protein 5, C-terminal domain BF31_2578 SM00387 Histidine kinase-like ATPases BF31_2597 SM00849 Metallo-beta-lactamase superfamily BF31_260 SM00344 helix_turn_helix ASNC type BF31_2600 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_2600 SM00866 BF31_2600 BF31_2602 SM01061 CAT RNA binding domain BF31_2609 SM00267 diguanylate cyclase BF31_2615 SM01007 Class II Aldolase and Adducin N-terminal domain BF31_2632 SM00382 ATPases associated with a variety of cellular activities BF31_2639 SM00382 ATPases associated with a variety of cellular activities BF31_2640 SM00642 Alpha-amylase domain BF31_2641 SM00642 Alpha-amylase domain BF31_2645 SM00354 helix_turn _helix lactose operon repressor BF31_2648 SM00387 Histidine kinase-like ATPases BF31_2648 SM00388 His Kinase A (phosphoacceptor) domain BF31_2657 SM00267 diguanylate cyclase BF31_2665 SM00052 Putative diguanylate phosphodiesterase BF31_2678 SM00849 Metallo-beta-lactamase superfamily BF31_2684 SM00861 Transketolase, pyrimidine binding domain BF31_27 SM00354 helix_turn _helix lactose operon repressor BF31_2700 SM00838 Elongation factor G C-terminus BF31_2705 SM00670 Large family of predicted nucleotide-binding domains BF31_2709 SM00878 Biotin carboxylase C-terminal domain BF31_2722 SM00855 Phosphoglycerate mutase family BF31_2731 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF31_2737 SM00530 Helix-turn-helix XRE-family like proteins BF31_2741 SM00530 Helix-turn-helix XRE-family like proteins BF31_2742 SM00530 Helix-turn-helix XRE-family like proteins BF31_2747 SM00382 ATPases associated with a variety of cellular activities BF31_2761 SM00530 Helix-turn-helix XRE-family like proteins BF31_2770 SM00507 HNH nucleases BF31_279 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF31_2792 SM00644 BF31_2792 BF31_2795 SM00530 Helix-turn-helix XRE-family like proteins BF31_2803 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF31_2809 SM00740 BF31_2809 BF31_2810 SM00740 BF31_2810 BF31_2818 SM00842 Cell division protein FtsA BF31_2819 SM00864 Tubulin/FtsZ family, GTPase domain BF31_2819 SM00865 Tubulin/FtsZ family, C-terminal domain BF31_2828 SM00363 S4 RNA-binding domain BF31_2833 SM00363 S4 RNA-binding domain BF31_2838 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF31_2839 SM00851 MGS-like domain BF31_2839 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF31_2839 SM01209 BF31_2839 BF31_2842 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF31_2851 SM00831 Cation transporter/ATPase, N-terminus BF31_2854 SM00072 Guanylate kinase homologues. BF31_2855 SM01409 BF31_2855 BF31_2857 SM00487 DEAD-like helicases superfamily BF31_2857 SM00490 helicase superfamily c-terminal domain BF31_2862 SM00331 Sigma factor PP2C-like phosphatases BF31_2862 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF31_2863 SM00220 Serine/Threonine protein kinases, catalytic domain BF31_2863 SM00740 BF31_2863 BF31_2866 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF31_2869 SM01120 BF31_2869 BF31_2869 SM01121 BF31_2869 BF31_2870 SM00487 DEAD-like helicases superfamily BF31_2870 SM00490 helicase superfamily c-terminal domain BF31_2873 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF31_2874 SM00822 BF31_2874 BF31_2876 SM00358 Double-stranded RNA binding motif BF31_2876 SM00535 Ribonuclease III family BF31_2877 SM00968 SMC proteins Flexible Hinge Domain BF31_2878 SM00382 ATPases associated with a variety of cellular activities BF31_2878 SM00962 SRP54-type protein, GTPase domain BF31_2878 SM00963 SRP54-type protein, helical bundle domain BF31_2880 SM00382 ATPases associated with a variety of cellular activities BF31_2880 SM00962 SRP54-type protein, GTPase domain BF31_2880 SM00963 SRP54-type protein, helical bundle domain BF31_2890 SM00881 CoA binding domain BF31_2892 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF31_2892 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF31_2892 SM00493 BF31_2892 BF31_2896 SM00382 ATPases associated with a variety of cellular activities BF31_2896 SM01086 C-terminal, D2-small domain, of ClpB protein BF31_290 SM00382 ATPases associated with a variety of cellular activities BF31_2905 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF31_2907 SM00479 BF31_2907 BF31_2907 SM00481 DNA polymerase alpha chain like domain BF31_2909 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_2909 SM00322 K homology RNA-binding domain BF31_2916 SM00904 Riboflavin kinase BF31_2917 SM01387 BF31_2917 BF31_2918 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_2918 SM00322 K homology RNA-binding domain BF31_292 SM00287 Bacterial SH3 domain homologues BF31_2924 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF31_2926 SM01130 BF31_2926 BF31_2927 SM00849 Metallo-beta-lactamase superfamily BF31_2930 SM00382 ATPases associated with a variety of cellular activities BF31_2930 SM00843 BF31_2930 BF31_2931 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_2931 SM00866 BF31_2931 BF31_2933 SM00382 ATPases associated with a variety of cellular activities BF31_2944 SM00852 Probable molybdopterin binding domain BF31_2945 SM00382 ATPases associated with a variety of cellular activities BF31_2947 SM00322 K homology RNA-binding domain BF31_2947 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_2953 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_2956 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF31_2956 SM00534 ATPase domain of DNA mismatch repair MUTS family BF31_2957 SM00853 MutL C terminal dimerisation domain BF31_2957 SM01340 BF31_2957 BF31_2958 SM00382 ATPases associated with a variety of cellular activities BF31_2961 SM00448 cheY-homologous receiver domain BF31_2961 SM00862 Transcriptional regulatory protein, C terminal BF31_2962 SM00387 Histidine kinase-like ATPases BF31_2962 SM00388 His Kinase A (phosphoacceptor) domain BF31_2968 SM00257 Lysin motif BF31_2970 SM00148 Phospholipase C, catalytic domain (part); domain X BF31_2974 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_2979 SM00052 Putative diguanylate phosphodiesterase BF31_2979 SM00091 PAS domain BF31_2979 SM00267 diguanylate cyclase BF31_2986 SM00478 endonuclease III BF31_2988 SM00342 helix_turn_helix, arabinose operon control protein BF31_2994 SM00382 ATPases associated with a variety of cellular activities BF31_3000 SM00411 bacterial (prokaryotic) histone like domain BF31_3004 SM00636 BF31_3004 BF31_3011 SM00420 helix_turn_helix, Deoxyribose operon repressor BF31_3011 SM01134 BF31_3011 BF31_3014 SM00287 Bacterial SH3 domain homologues BF31_302 SM00829 Enoylreductase BF31_3021 SM00382 ATPases associated with a variety of cellular activities BF31_3026 SM00422 helix_turn_helix, mercury resistance BF31_3027 SM01230 BF31_3027 BF31_3032 SM00530 Helix-turn-helix XRE-family like proteins BF31_3033 SM00530 Helix-turn-helix XRE-family like proteins BF31_3043 SM00382 ATPases associated with a variety of cellular activities BF31_3058 SM00530 Helix-turn-helix XRE-family like proteins BF31_307 SM00450 Rhodanese Homology Domain BF31_3089 SM00287 Bacterial SH3 domain homologues BF31_3089 SM00644 BF31_3089 BF31_3095 SM00028 Tetratricopeptide repeats BF31_3101 SM00857 Resolvase, N terminal domain BF31_3105 SM00062 Bacterial periplasmic substrate-binding proteins BF31_3106 SM00382 ATPases associated with a variety of cellular activities BF31_311 SM00450 Rhodanese Homology Domain BF31_311 SM00849 Metallo-beta-lactamase superfamily BF31_3110 SM00861 Transketolase, pyrimidine binding domain BF31_3113 SM00382 ATPases associated with a variety of cellular activities BF31_3114 SM00382 ATPases associated with a variety of cellular activities BF31_3117 SM00644 BF31_3117 BF31_312 SM00450 Rhodanese Homology Domain BF31_314 SM00450 Rhodanese Homology Domain BF31_3143 SM01058 CarD-like/TRCF domain BF31_3149 SM00091 PAS domain BF31_3149 SM00387 Histidine kinase-like ATPases BF31_3149 SM00388 His Kinase A (phosphoacceptor) domain BF31_3152 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF31_3153 SM00644 BF31_3153 BF31_3153 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF31_3166 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF31_317 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_3174 SM00382 ATPases associated with a variety of cellular activities BF31_3177 SM00479 BF31_3177 BF31_3181 SM00257 Lysin motif BF31_3181 SM00636 BF31_3181 BF31_3184 SM01207 BF31_3184 BF31_3187 SM00448 cheY-homologous receiver domain BF31_3187 SM00862 Transcriptional regulatory protein, C terminal BF31_3188 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF31_3189 SM00881 CoA binding domain BF31_3190 SM00387 Histidine kinase-like ATPases BF31_3190 SM00433 TopoisomeraseII BF31_3191 SM00434 DNA Topoisomerase IV BF31_3194 SM00382 ATPases associated with a variety of cellular activities BF31_3215 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF31_3215 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF31_3219 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_3222 SM00852 Probable molybdopterin binding domain BF31_3244 SM01022 BF31_3244 BF31_3249 SM00357 Cold shock protein domain BF31_3250 SM00479 BF31_3250 BF31_3259 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF31_3274 SM00028 Tetratricopeptide repeats BF31_3276 SM00829 Enoylreductase BF31_3277 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3290 SM00642 Alpha-amylase domain BF31_3292 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF31_3292 SM00534 ATPase domain of DNA mismatch repair MUTS family BF31_3294 SM00855 Phosphoglycerate mutase family BF31_3295 SM00829 Enoylreductase BF31_331 SM00354 helix_turn _helix lactose operon repressor BF31_3320 SM00829 Enoylreductase BF31_3321 SM00849 Metallo-beta-lactamase superfamily BF31_333 SM00640 Glycosyl hydrolases family 32 BF31_3334 SM00641 Glycosyl hydrolases family 25 BF31_3335 SM00849 Metallo-beta-lactamase superfamily BF31_3341 SM00382 ATPases associated with a variety of cellular activities BF31_3345 SM00871 Bacterial transcription activator, effector binding domain BF31_3353 SM00636 BF31_3353 BF31_3354 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3355 SM00248 ankyrin repeats BF31_3368 SM00849 Metallo-beta-lactamase superfamily BF31_3376 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_3376 SM00866 BF31_3376 BF31_3382 SM00914 BF31_3382 BF31_3391 SM01276 BF31_3391 BF31_3394 SM00829 Enoylreductase BF31_3397 SM00829 Enoylreductase BF31_3400 SM00861 Transketolase, pyrimidine binding domain BF31_3401 SM01350 BF31_3401 BF31_3409 SM00422 helix_turn_helix, mercury resistance BF31_3410 SM01091 Transporter associated domain BF31_3415 SM00028 Tetratricopeptide repeats BF31_342 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_3426 SM00382 ATPases associated with a variety of cellular activities BF31_3428 SM01266 BF31_3428 BF31_3440 SM00530 Helix-turn-helix XRE-family like proteins BF31_3443 SM00382 ATPases associated with a variety of cellular activities BF31_3455 SM01207 BF31_3455 BF31_3456 SM00530 Helix-turn-helix XRE-family like proteins BF31_3465 SM00382 ATPases associated with a variety of cellular activities BF31_3478 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3480 SM00382 ATPases associated with a variety of cellular activities BF31_3485 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_3495 SM00287 Bacterial SH3 domain homologues BF31_3498 SM00342 helix_turn_helix, arabinose operon control protein BF31_3510 SM00344 helix_turn_helix ASNC type BF31_3518 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3524 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF31_3529 SM00319 Homologues of the ligand binding domain of Tar BF31_3530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_3530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_3537 SM00028 Tetratricopeptide repeats BF31_3538 SM00354 helix_turn _helix lactose operon repressor BF31_3557 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_3559 SM00448 cheY-homologous receiver domain BF31_3559 SM00862 Transcriptional regulatory protein, C terminal BF31_3560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_3560 SM00387 Histidine kinase-like ATPases BF31_3560 SM00388 His Kinase A (phosphoacceptor) domain BF31_3562 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3564 SM00382 ATPases associated with a variety of cellular activities BF31_3574 SM00530 Helix-turn-helix XRE-family like proteins BF31_3585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_3585 SM00387 Histidine kinase-like ATPases BF31_3585 SM00388 His Kinase A (phosphoacceptor) domain BF31_3586 SM00448 cheY-homologous receiver domain BF31_3586 SM00862 Transcriptional regulatory protein, C terminal BF31_359 SM00382 ATPases associated with a variety of cellular activities BF31_3593 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_3606 SM00344 helix_turn_helix ASNC type BF31_361 SM00287 Bacterial SH3 domain homologues BF31_3610 SM00028 Tetratricopeptide repeats BF31_3613 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3616 SM00226 Low molecular weight phosphatase family BF31_3621 SM00382 ATPases associated with a variety of cellular activities BF31_364 SM00116 Domain in cystathionine beta-synthase and other proteins. BF31_3648 SM01060 BF31_3648 BF31_3659 SM00387 Histidine kinase-like ATPases BF31_3660 SM00448 cheY-homologous receiver domain BF31_3666 SM00919 Malic enzyme, NAD binding domain BF31_3666 SM01274 BF31_3666 BF31_3673 SM00530 Helix-turn-helix XRE-family like proteins BF31_3674 SM00870 BF31_3674 BF31_3692 SM00849 Metallo-beta-lactamase superfamily BF31_3705 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3709 SM00346 helix_turn_helix isocitrate lyase regulation BF31_3710 SM00796 Allophanate hydrolase subunit 1 BF31_3711 SM00797 Allophanate hydrolase subunit 2 BF31_3738 SM00448 cheY-homologous receiver domain BF31_3738 SM00862 Transcriptional regulatory protein, C terminal BF31_3739 SM00387 Histidine kinase-like ATPases BF31_3739 SM00388 His Kinase A (phosphoacceptor) domain BF31_3743 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_3748 SM00342 helix_turn_helix, arabinose operon control protein BF31_3748 SM00871 Bacterial transcription activator, effector binding domain BF31_3753 SM00382 ATPases associated with a variety of cellular activities BF31_3755 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_3756 SM00382 ATPases associated with a variety of cellular activities BF31_3761 SM00889 Elongation factor G, domain IV BF31_3762 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_3773 SM01060 BF31_3773 BF31_3794 SM00850 LytTr DNA-binding domain BF31_3799 SM00530 Helix-turn-helix XRE-family like proteins BF31_3801 SM00098 Alkaline phosphatase homologues BF31_3805 SM00346 helix_turn_helix isocitrate lyase regulation BF31_3808 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF31_3812 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_3818 SM01133 BF31_3818 BF31_3823 SM00382 ATPases associated with a variety of cellular activities BF31_3834 SM00287 Bacterial SH3 domain homologues BF31_3842 SM00830 Chorismate mutase type II BF31_3852 SM00382 ATPases associated with a variety of cellular activities BF31_3870 SM00028 Tetratricopeptide repeats BF31_3876 SM00382 ATPases associated with a variety of cellular activities BF31_3877 SM00062 Bacterial periplasmic substrate-binding proteins BF31_3888 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_3890 SM00382 ATPases associated with a variety of cellular activities BF31_3929 SM00448 cheY-homologous receiver domain BF31_3929 SM00862 Transcriptional regulatory protein, C terminal BF31_3930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_3930 SM00387 Histidine kinase-like ATPases BF31_3930 SM00388 His Kinase A (phosphoacceptor) domain BF31_3931 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF31_3939 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF31_394 SM00899 BF31_394 BF31_3952 SM00091 PAS domain BF31_3952 SM00382 ATPases associated with a variety of cellular activities BF31_3956 SM01130 BF31_3956 BF31_3962 SM01131 BF31_3962 BF31_3970 SM00341 Helicase and RNase D C-terminal BF31_3970 SM00487 DEAD-like helicases superfamily BF31_3970 SM00490 helicase superfamily c-terminal domain BF31_3970 SM00956 BF31_3970 BF31_3984 SM00849 Metallo-beta-lactamase superfamily BF31_3993 SM00060 Fibronectin type 3 domain BF31_3993 SM00495 Chitin-binding domain type 3 BF31_4000 SM00116 Domain in cystathionine beta-synthase and other proteins. BF31_4000 SM00382 ATPases associated with a variety of cellular activities BF31_4011 SM00861 Transketolase, pyrimidine binding domain BF31_4021 SM00420 helix_turn_helix, Deoxyribose operon repressor BF31_4021 SM01134 BF31_4021 BF31_4025 SM00382 ATPases associated with a variety of cellular activities BF31_4048 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_4052 SM00871 Bacterial transcription activator, effector binding domain BF31_4056 SM00642 Alpha-amylase domain BF31_4077 SM00465 GIY-YIG type nucleases (URI domain) BF31_4100 SM00480 DNA polymerase III beta subunit BF31_4111 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_412 SM00530 Helix-turn-helix XRE-family like proteins BF31_4120 SM00422 helix_turn_helix, mercury resistance BF31_4132 SM00740 BF31_4132 BF31_4133 SM00829 Enoylreductase BF31_4136 SM00387 Histidine kinase-like ATPases BF31_4136 SM00388 His Kinase A (phosphoacceptor) domain BF31_4139 SM00382 ATPases associated with a variety of cellular activities BF31_4144 SM00091 PAS domain BF31_4144 SM00387 Histidine kinase-like ATPases BF31_4144 SM00388 His Kinase A (phosphoacceptor) domain BF31_4170 SM01209 BF31_4170 BF31_4171 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_4178 SM00382 ATPases associated with a variety of cellular activities BF31_4181 SM00382 ATPases associated with a variety of cellular activities BF31_4183 SM00387 Histidine kinase-like ATPases BF31_4185 SM00448 cheY-homologous receiver domain BF31_4185 SM00862 Transcriptional regulatory protein, C terminal BF31_4196 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_4199 SM00342 helix_turn_helix, arabinose operon control protein BF31_4205 SM00422 helix_turn_helix, mercury resistance BF31_4205 SM00871 Bacterial transcription activator, effector binding domain BF31_4209 SM00382 ATPases associated with a variety of cellular activities BF31_421 SM00530 Helix-turn-helix XRE-family like proteins BF31_4221 SM00448 cheY-homologous receiver domain BF31_4221 SM00862 Transcriptional regulatory protein, C terminal BF31_4222 SM00387 Histidine kinase-like ATPases BF31_4222 SM00388 His Kinase A (phosphoacceptor) domain BF31_423 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_4234 SM00878 Biotin carboxylase C-terminal domain BF31_4240 SM00382 ATPases associated with a variety of cellular activities BF31_4243 SM00450 Rhodanese Homology Domain BF31_4243 SM00849 Metallo-beta-lactamase superfamily BF31_4245 SM00860 SMI1 / KNR4 family BF31_4247 SM00052 Putative diguanylate phosphodiesterase BF31_4247 SM00091 PAS domain BF31_4247 SM00267 diguanylate cyclase BF31_4249 SM00382 ATPases associated with a variety of cellular activities BF31_4253 SM00646 BF31_4253 BF31_4258 SM00530 Helix-turn-helix XRE-family like proteins BF31_4274 SM00354 helix_turn _helix lactose operon repressor BF31_4275 SM00014 Acid phosphatase homologues BF31_4292 SM00855 Phosphoglycerate mutase family BF31_4293 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_4298 SM00382 ATPases associated with a variety of cellular activities BF31_430 SM00770 Zinc dependent phospholipase C (alpha toxin) BF31_4303 SM00487 DEAD-like helicases superfamily BF31_4303 SM00490 helicase superfamily c-terminal domain BF31_4306 SM00849 Metallo-beta-lactamase superfamily BF31_4310 SM01207 BF31_4310 BF31_432 SM00829 Enoylreductase BF31_4326 SM00530 Helix-turn-helix XRE-family like proteins BF31_4328 SM00646 BF31_4328 BF31_4330 SM00382 ATPases associated with a variety of cellular activities BF31_4331 SM00382 ATPases associated with a variety of cellular activities BF31_4338 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF31_4351 SM00357 Cold shock protein domain BF31_4359 SM00530 Helix-turn-helix XRE-family like proteins BF31_4364 SM01059 Chloramphenicol acetyltransferase BF31_4368 SM00849 Metallo-beta-lactamase superfamily BF31_4374 SM00849 Metallo-beta-lactamase superfamily BF31_4387 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF31_4388 SM00363 S4 RNA-binding domain BF31_439 SM00382 ATPases associated with a variety of cellular activities BF31_4396 SM00411 bacterial (prokaryotic) histone like domain BF31_4400 SM00923 MbtH-like protein BF31_4401 SM00823 Phosphopantetheine attachment site BF31_4401 SM00824 Thioesterase BF31_4408 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_442 SM00354 helix_turn _helix lactose operon repressor BF31_4436 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF31_4447 SM00530 Helix-turn-helix XRE-family like proteins BF31_445 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_4452 SM00860 SMI1 / KNR4 family BF31_4454 SM00014 Acid phosphatase homologues BF31_4457 SM00219 Tyrosine kinase, catalytic domain BF31_4465 SM00382 ATPases associated with a variety of cellular activities BF31_4468 SM00882 Coenzyme A transferase BF31_4469 SM00882 Coenzyme A transferase BF31_447 SM00382 ATPases associated with a variety of cellular activities BF31_4472 SM00387 Histidine kinase-like ATPases BF31_4472 SM00388 His Kinase A (phosphoacceptor) domain BF31_4475 SM01091 Transporter associated domain BF31_448 SM00382 ATPases associated with a variety of cellular activities BF31_4483 SM00382 ATPases associated with a variety of cellular activities BF31_4497 SM00829 Enoylreductase BF31_4500 SM00421 helix_turn_helix, Lux Regulon BF31_4500 SM00448 cheY-homologous receiver domain BF31_4501 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF31_4523 SM00563 Phosphate acyltransferases BF31_4536 SM00382 ATPases associated with a variety of cellular activities BF31_4552 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_4552 SM00387 Histidine kinase-like ATPases BF31_4552 SM00388 His Kinase A (phosphoacceptor) domain BF31_4553 SM00448 cheY-homologous receiver domain BF31_4553 SM00862 Transcriptional regulatory protein, C terminal BF31_456 SM00448 cheY-homologous receiver domain BF31_456 SM00862 Transcriptional regulatory protein, C terminal BF31_4564 SM00857 Resolvase, N terminal domain BF31_457 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_457 SM00387 Histidine kinase-like ATPases BF31_457 SM00388 His Kinase A (phosphoacceptor) domain BF31_4571 SM00028 Tetratricopeptide repeats BF31_4574 SM00382 ATPases associated with a variety of cellular activities BF31_4577 SM00327 von Willebrand factor (vWF) type A domain BF31_4583 SM00028 Tetratricopeptide repeats BF31_4584 SM00028 Tetratricopeptide repeats BF31_4588 SM00836 DALR anticodon binding domain BF31_4588 SM01016 Arginyl tRNA synthetase N terminal dom BF31_4592 SM00567 E-Z type HEAT repeats BF31_4592 SM00932 Scaffold protein Nfu/NifU N terminal BF31_4599 SM00382 ATPases associated with a variety of cellular activities BF31_4600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_4611 SM00894 Excalibur calcium-binding domain BF31_4624 SM00852 Probable molybdopterin binding domain BF31_4626 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_4627 SM00100 Cyclic nucleotide-monophosphate binding domain BF31_4627 SM00419 helix_turn_helix, cAMP Regulatory protein BF31_4629 SM00382 ATPases associated with a variety of cellular activities BF31_4630 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_4634 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF31_4639 SM00460 Transglutaminase/protease-like homologues BF31_4642 SM00849 Metallo-beta-lactamase superfamily BF31_4646 SM00829 Enoylreductase BF31_4650 SM00487 DEAD-like helicases superfamily BF31_4650 SM00490 helicase superfamily c-terminal domain BF31_467 SM00062 Bacterial periplasmic substrate-binding proteins BF31_467 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF31_4673 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_4679 SM01005 Alanine racemase, C-terminal domain BF31_468 SM00382 ATPases associated with a variety of cellular activities BF31_4682 SM00855 Phosphoglycerate mutase family BF31_4683 SM00244 prohibitin homologues BF31_4698 SM01091 Transporter associated domain BF31_4703 SM00155 Phospholipase D. Active site motifs. BF31_4713 SM00855 Phosphoglycerate mutase family BF31_4734 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF31_4746 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_4746 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_4753 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_4755 SM00966 SpoVT / AbrB like domain BF31_476 SM00642 Alpha-amylase domain BF31_4761 SM00460 Transglutaminase/protease-like homologues BF31_478 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_478 SM00866 BF31_478 BF31_4780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_4780 SM00387 Histidine kinase-like ATPases BF31_4780 SM00388 His Kinase A (phosphoacceptor) domain BF31_4781 SM00448 cheY-homologous receiver domain BF31_4781 SM00862 Transcriptional regulatory protein, C terminal BF31_4796 SM00387 Histidine kinase-like ATPases BF31_4796 SM00388 His Kinase A (phosphoacceptor) domain BF31_4797 SM00448 cheY-homologous receiver domain BF31_4797 SM00862 Transcriptional regulatory protein, C terminal BF31_4798 SM00382 ATPases associated with a variety of cellular activities BF31_48 SM00422 helix_turn_helix, mercury resistance BF31_480 SM00052 Putative diguanylate phosphodiesterase BF31_480 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF31_480 SM00091 PAS domain BF31_480 SM00267 diguanylate cyclase BF31_4801 SM00287 Bacterial SH3 domain homologues BF31_4807 SM00382 ATPases associated with a variety of cellular activities BF31_4808 SM00382 ATPases associated with a variety of cellular activities BF31_4812 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_4819 SM00382 ATPases associated with a variety of cellular activities BF31_4820 SM00382 ATPases associated with a variety of cellular activities BF31_4827 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF31_483 SM00155 Phospholipase D. Active site motifs. BF31_484 SM00382 ATPases associated with a variety of cellular activities BF31_4847 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF31_4847 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF31_4847 SM00493 BF31_4847 BF31_4849 SM00287 Bacterial SH3 domain homologues BF31_485 SM00327 von Willebrand factor (vWF) type A domain BF31_4852 SM01011 Aminopeptidase P, N-terminal domain BF31_4858 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF31_4860 SM01133 BF31_4860 BF31_4871 SM00450 Rhodanese Homology Domain BF31_4874 SM00387 Histidine kinase-like ATPases BF31_4874 SM00388 His Kinase A (phosphoacceptor) domain BF31_4875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_4876 SM00448 cheY-homologous receiver domain BF31_4876 SM00862 Transcriptional regulatory protein, C terminal BF31_4878 SM00729 Elongator protein 3, MiaB family, Radical SAM BF31_4890 SM00850 LytTr DNA-binding domain BF31_4896 SM00854 Bacterial capsule synthesis protein PGA_cap BF31_490 SM00382 ATPases associated with a variety of cellular activities BF31_4933 SM00047 Lysozyme subfamily 2 BF31_4934 SM00646 BF31_4934 BF31_4946 SM00487 DEAD-like helicases superfamily BF31_4946 SM00490 helicase superfamily c-terminal domain BF31_4947 SM00448 cheY-homologous receiver domain BF31_4948 SM00387 Histidine kinase-like ATPases BF31_4949 SM00919 Malic enzyme, NAD binding domain BF31_4949 SM01274 BF31_4949 BF31_4957 SM00382 ATPases associated with a variety of cellular activities BF31_4959 SM00421 helix_turn_helix, Lux Regulon BF31_4959 SM00448 cheY-homologous receiver domain BF31_496 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_4968 SM00530 Helix-turn-helix XRE-family like proteins BF31_4986 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF31_4988 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_4988 SM00895 BF31_4988 BF31_5 SM00342 helix_turn_helix, arabinose operon control protein BF31_5 SM00871 Bacterial transcription activator, effector binding domain BF31_5001 SM00855 Phosphoglycerate mutase family BF31_5004 SM00835 Cupin BF31_5008 SM00849 Metallo-beta-lactamase superfamily BF31_5008 SM01027 Beta-Casp domain BF31_5011 SM00382 ATPases associated with a variety of cellular activities BF31_5015 SM00530 Helix-turn-helix XRE-family like proteins BF31_5026 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF31_5028 SM00382 ATPases associated with a variety of cellular activities BF31_5028 SM00962 SRP54-type protein, GTPase domain BF31_5043 SM00028 Tetratricopeptide repeats BF31_5046 SM00028 Tetratricopeptide repeats BF31_5052 SM00260 Two component signalling adaptor domain BF31_5052 SM00448 cheY-homologous receiver domain BF31_5061 SM00382 ATPases associated with a variety of cellular activities BF31_5079 SM00138 Methyltransferase, chemotaxis proteins BF31_5083 SM00260 Two component signalling adaptor domain BF31_5083 SM00387 Histidine kinase-like ATPases BF31_5083 SM01231 BF31_5083 BF31_5084 SM00073 Histidine Phosphotransfer domain BF31_5085 SM00448 cheY-homologous receiver domain BF31_509 SM00028 Tetratricopeptide repeats BF31_509 SM00530 Helix-turn-helix XRE-family like proteins BF31_5103 SM00422 helix_turn_helix, mercury resistance BF31_5103 SM00871 Bacterial transcription activator, effector binding domain BF31_5104 SM00849 Metallo-beta-lactamase superfamily BF31_5114 SM00357 Cold shock protein domain BF31_512 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_5138 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF31_5138 SM00475 5'-3' exonuclease BF31_514 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF31_514 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF31_5144 SM00450 Rhodanese Homology Domain BF31_5157 SM00491 BF31_5157 BF31_5159 SM00981 BF31_5159 BF31_5170 SM00060 Fibronectin type 3 domain BF31_5172 SM00478 endonuclease III BF31_5172 SM00525 BF31_5172 BF31_5177 SM00479 BF31_5177 BF31_5177 SM00487 DEAD-like helicases superfamily BF31_5177 SM00491 BF31_5177 BF31_518 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF31_518 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF31_5186 SM00851 MGS-like domain BF31_5190 SM00986 Uracil DNA glycosylase superfamily BF31_5190 SM00987 UreE urease accessory protein, C-terminal domain BF31_5199 SM00914 BF31_5199 BF31_5200 SM00028 Tetratricopeptide repeats BF31_5204 SM00562 BF31_5204 BF31_5209 SM00411 bacterial (prokaryotic) histone like domain BF31_522 SM00448 cheY-homologous receiver domain BF31_522 SM00862 Transcriptional regulatory protein, C terminal BF31_5220 SM01240 BF31_5220 BF31_5221 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_5224 SM00870 BF31_5224 BF31_5226 SM00644 BF31_5226 BF31_5229 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF31_5231 SM00422 helix_turn_helix, mercury resistance BF31_5233 SM00257 Lysin motif BF31_5235 SM00487 DEAD-like helicases superfamily BF31_5235 SM00490 helicase superfamily c-terminal domain BF31_5240 SM00257 Lysin motif BF31_5242 SM00091 PAS domain BF31_5242 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_5242 SM00387 Histidine kinase-like ATPases BF31_5242 SM00388 His Kinase A (phosphoacceptor) domain BF31_5243 SM00448 cheY-homologous receiver domain BF31_5243 SM00862 Transcriptional regulatory protein, C terminal BF31_5247 SM00363 S4 RNA-binding domain BF31_5258 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_5258 SM00387 Histidine kinase-like ATPases BF31_5258 SM00388 His Kinase A (phosphoacceptor) domain BF31_526 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_5262 SM00091 PAS domain BF31_5262 SM00388 His Kinase A (phosphoacceptor) domain BF31_5280 SM00421 helix_turn_helix, Lux Regulon BF31_5280 SM00448 cheY-homologous receiver domain BF31_5281 SM00387 Histidine kinase-like ATPases BF31_529 SM00919 Malic enzyme, NAD binding domain BF31_529 SM01274 BF31_529 BF31_531 SM00448 cheY-homologous receiver domain BF31_5317 SM01329 BF31_5317 BF31_5318 SM00917 LeuA allosteric (dimerisation) domain BF31_532 SM00387 Histidine kinase-like ATPases BF31_533 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_533 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_5332 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_5356 SM00344 helix_turn_helix ASNC type BF31_536 SM00387 Histidine kinase-like ATPases BF31_536 SM00388 His Kinase A (phosphoacceptor) domain BF31_5360 SM00382 ATPases associated with a variety of cellular activities BF31_5362 SM00382 ATPases associated with a variety of cellular activities BF31_5363 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_5366 SM00465 GIY-YIG type nucleases (URI domain) BF31_5366 SM00496 Intron-encoded nuclease repeat 2 BF31_537 SM00448 cheY-homologous receiver domain BF31_537 SM00862 Transcriptional regulatory protein, C terminal BF31_5380 SM00387 Histidine kinase-like ATPases BF31_5380 SM00388 His Kinase A (phosphoacceptor) domain BF31_5384 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_5385 SM00387 Histidine kinase-like ATPases BF31_5385 SM00388 His Kinase A (phosphoacceptor) domain BF31_5391 SM00365 Leucine-rich repeat, SDS22-like subfamily BF31_5391 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF31_5395 SM00420 helix_turn_helix, Deoxyribose operon repressor BF31_5395 SM01134 BF31_5395 BF31_5410 SM00822 BF31_5410 BF31_542 SM00382 ATPases associated with a variety of cellular activities BF31_5425 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_5425 SM00895 BF31_5425 BF31_5426 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_5426 SM00387 Histidine kinase-like ATPases BF31_5426 SM00388 His Kinase A (phosphoacceptor) domain BF31_5427 SM00448 cheY-homologous receiver domain BF31_5427 SM00862 Transcriptional regulatory protein, C terminal BF31_5437 SM00014 Acid phosphatase homologues BF31_544 SM00248 ankyrin repeats BF31_5441 SM00382 ATPases associated with a variety of cellular activities BF31_5444 SM00530 Helix-turn-helix XRE-family like proteins BF31_5462 SM00530 Helix-turn-helix XRE-family like proteins BF31_5463 SM00861 Transketolase, pyrimidine binding domain BF31_548 SM00448 cheY-homologous receiver domain BF31_5485 SM00635 Bacterial Ig-like domain 2 BF31_549 SM00091 PAS domain BF31_549 SM00387 Histidine kinase-like ATPases BF31_550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_551 SM00244 prohibitin homologues BF31_5516 SM00954 Region found in RelA / SpoT proteins BF31_5518 SM01118 BF31_5518 BF31_5524 SM00155 Phospholipase D. Active site motifs. BF31_553 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF31_5531 SM00382 ATPases associated with a variety of cellular activities BF31_5532 SM00382 ATPases associated with a variety of cellular activities BF31_5540 SM00825 Beta-ketoacyl synthase BF31_5546 SM00382 ATPases associated with a variety of cellular activities BF31_5546 SM01086 C-terminal, D2-small domain, of ClpB protein BF31_5555 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_5557 SM00530 Helix-turn-helix XRE-family like proteins BF31_5558 SM00642 Alpha-amylase domain BF31_556 SM00364 Leucine-rich repeats, bacterial type BF31_556 SM00365 Leucine-rich repeat, SDS22-like subfamily BF31_556 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF31_556 SM00725 NEAr Transporter domain BF31_5560 SM01060 BF31_5560 BF31_558 SM00763 PrkA AAA domain BF31_5583 SM00357 Cold shock protein domain BF31_5591 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_5591 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_560 SM00052 Putative diguanylate phosphodiesterase BF31_560 SM00091 PAS domain BF31_560 SM00267 diguanylate cyclase BF31_5601 SM00864 Tubulin/FtsZ family, GTPase domain BF31_5604 SM00843 BF31_5604 BF31_5629 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain BF31_563 SM00567 E-Z type HEAT repeats BF31_5649 SM00487 DEAD-like helicases superfamily BF31_5650 SM00507 HNH nucleases BF31_5664 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF31_5664 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF31_5664 SM00493 BF31_5664 BF31_5666 SM00318 Staphylococcal nuclease homologues BF31_5670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_5673 SM00028 Tetratricopeptide repeats BF31_5679 SM00954 Region found in RelA / SpoT proteins BF31_5688 SM00860 SMI1 / KNR4 family BF31_5707 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_5708 SM00758 BF31_5708 BF31_5713 SM00857 Resolvase, N terminal domain BF31_5738 SM00984 UDP binding domain BF31_5743 SM00014 Acid phosphatase homologues BF31_5748 SM00725 NEAr Transporter domain BF31_5809 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF31_5810 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF31_5810 SM00493 BF31_5810 BF31_5861 SM00646 BF31_5861 BF31_5873 SM00014 Acid phosphatase homologues BF31_5880 SM00854 Bacterial capsule synthesis protein PGA_cap BF31_5884 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF31_596 SM00382 ATPases associated with a variety of cellular activities BF31_600 SM00382 ATPases associated with a variety of cellular activities BF31_605 SM00478 endonuclease III BF31_605 SM00525 BF31_605 BF31_621 SM00984 UDP binding domain BF31_632 SM00530 Helix-turn-helix XRE-family like proteins BF31_636 SM00382 ATPases associated with a variety of cellular activities BF31_64 SM00382 ATPases associated with a variety of cellular activities BF31_67 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_685 SM00382 ATPases associated with a variety of cellular activities BF31_692 SM00530 Helix-turn-helix XRE-family like proteins BF31_698 SM00478 endonuclease III BF31_718 SM00226 Low molecular weight phosphatase family BF31_720 SM00831 Cation transporter/ATPase, N-terminus BF31_729 SM00946 Prolyl-tRNA synthetase, C-terminal BF31_734 SM00530 Helix-turn-helix XRE-family like proteins BF31_740 SM00060 Fibronectin type 3 domain BF31_740 SM00636 BF31_740 BF31_740 SM00637 BF31_740 BF31_741 SM00382 ATPases associated with a variety of cellular activities BF31_742 SM00382 ATPases associated with a variety of cellular activities BF31_746 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_746 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_750 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF31_750 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF31_750 SM00493 BF31_750 BF31_754 SM00642 Alpha-amylase domain BF31_755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_756 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF31_756 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_757 SM00382 ATPases associated with a variety of cellular activities BF31_758 SM00062 Bacterial periplasmic substrate-binding proteins BF31_758 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF31_76 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_779 SM01007 Class II Aldolase and Adducin N-terminal domain BF31_788 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF31_8 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_801 SM00382 ATPases associated with a variety of cellular activities BF31_804 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF31_805 SM00845 GatB domain BF31_809 SM00347 helix_turn_helix multiple antibiotic resistance protein BF31_816 SM00382 ATPases associated with a variety of cellular activities BF31_816 SM00930 BF31_816 BF31_822 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF31_822 SM00292 breast cancer carboxy-terminal domain BF31_822 SM00532 Ligase N family BF31_827 SM00244 prohibitin homologues BF31_829 SM01209 BF31_829 BF31_829 SM01210 BF31_829 BF31_830 SM00798 AICARFT/IMPCHase bienzyme BF31_830 SM00851 MGS-like domain BF31_835 SM01211 BF31_835 BF31_838 SM00998 Adenylosuccinate lyase C-terminus BF31_840 SM01001 AIR carboxylase BF31_845 SM00448 cheY-homologous receiver domain BF31_845 SM00862 Transcriptional regulatory protein, C terminal BF31_846 SM00387 Histidine kinase-like ATPases BF31_846 SM00388 His Kinase A (phosphoacceptor) domain BF31_847 SM00382 ATPases associated with a variety of cellular activities BF31_86 SM00530 Helix-turn-helix XRE-family like proteins BF31_869 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF31_869 SM00387 Histidine kinase-like ATPases BF31_869 SM00388 His Kinase A (phosphoacceptor) domain BF31_870 SM00448 cheY-homologous receiver domain BF31_870 SM00862 Transcriptional regulatory protein, C terminal BF31_874 SM00883 Chaperonin 10 Kd subunit BF31_877 SM00881 CoA binding domain BF31_878 SM00382 ATPases associated with a variety of cellular activities BF31_900 SM00731 SprT homologues. BF31_901 SM00316 Ribosomal protein S1-like RNA-binding domain BF31_901 SM00732 Likely ribonuclease with RNase H fold. BF31_904 SM01005 Alanine racemase, C-terminal domain BF31_909 SM00487 DEAD-like helicases superfamily BF31_909 SM00490 helicase superfamily c-terminal domain BF31_91 SM00028 Tetratricopeptide repeats BF31_924 SM00382 ATPases associated with a variety of cellular activities BF31_925 SM00382 ATPases associated with a variety of cellular activities BF31_931 SM00382 ATPases associated with a variety of cellular activities BF31_941 SM00354 helix_turn _helix lactose operon repressor BF31_943 SM00563 Phosphate acyltransferases BF31_96 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF31_962 SM00342 helix_turn_helix, arabinose operon control protein BF31_965 SM00382 ATPases associated with a variety of cellular activities BF31_966 SM00382 ATPases associated with a variety of cellular activities BF31_976 SM00829 Enoylreductase BF31_978 SM00382 ATPases associated with a variety of cellular activities BF31_978 SM00930 BF31_978 BF31_989 SM01350 BF31_989 BF31_993 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF31_993 SM00895 BF31_993