locus-tag class description BF39_1 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BF39_10 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF39_10 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_100 PF13188 PAS domain BF39_100 PF00512 His Kinase A (phospho-acceptor) domain BF39_100 PF00989 PAS fold BF39_100 PF13426 PAS domain BF39_1004 PF01595 Cyclin M transmembrane N-terminal domain BF39_1004 PF03471 Transporter associated domain BF39_1004 PF00571 CBS domain BF39_1005 PF00171 Aldehyde dehydrogenase family BF39_1006 PF07997 Protein of unknown function (DUF1694) BF39_1007 PF09385 Histidine kinase N terminal BF39_1009 PF00202 Aminotransferase class-III BF39_101 PF06508 Queuosine biosynthesis protein QueC BF39_1010 PF01144 Coenzyme A transferase BF39_1011 PF01144 Coenzyme A transferase BF39_1012 PF01546 Peptidase family M20/M25/M40 BF39_1012 PF07687 Peptidase dimerisation domain BF39_1013 PF00583 Acetyltransferase (GNAT) family BF39_1014 PF00158 Sigma-54 interaction domain BF39_1014 PF13426 PAS domain BF39_1014 PF02954 Bacterial regulatory protein, Fis family BF39_1015 PF12544 Lysine-2,3-aminomutase BF39_1016 PF14122 YokU-like protein, putative antitoxin BF39_1017 PF06855 YozE SAM-like fold BF39_102 PF01242 6-pyruvoyl tetrahydropterin synthase BF39_1020 PF14162 YozD-like protein BF39_1023 PF07070 SpoOM protein BF39_1024 PF01545 Cation efflux family BF39_1024 PF16916 Dimerisation domain of Zinc Transporter BF39_1025 PF01569 PAP2 superfamily BF39_1026 PF00085 Thioredoxin BF39_1028 PF04740 LXG domain of WXG superfamily BF39_1028 PF14436 Bacterial EndoU nuclease BF39_1029 PF00395 S-layer homology domain BF39_1029 PF03424 Carbohydrate binding domain (family 17/28) BF39_1029 PF00150 Cellulase (glycosyl hydrolase family 5) BF39_103 PF04055 Radical SAM superfamily BF39_1031 PF04471 Restriction endonuclease BF39_104 PF14489 QueF-like protein BF39_105 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BF39_1051 PF10676 Spore germination protein gerPA/gerPF BF39_1057 PF07690 Major Facilitator Superfamily BF39_1058 PF01521 Iron-sulphur cluster biosynthesis BF39_1059 PF00285 Citrate synthase, C-terminal domain BF39_1060 PF03972 MmgE/PrpD family BF39_1062 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF39_1062 PF02770 Acyl-CoA dehydrogenase, middle domain BF39_1062 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF39_1063 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF39_1063 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF39_1064 PF00171 Aldehyde dehydrogenase family BF39_1065 PF01810 LysE type translocator BF39_1066 PF00378 Enoyl-CoA hydratase/isomerase BF39_1068 PF10763 Protein of unknown function (DUF2584) BF39_1069 PF00149 Calcineurin-like phosphoesterase BF39_1069 PF12320 Type 5 capsule protein repressor C-terminal domain BF39_1070 PF13476 AAA domain BF39_1072 PF01022 Bacterial regulatory protein, arsR family BF39_1074 PF07690 Major Facilitator Superfamily BF39_1075 PF00106 short chain dehydrogenase BF39_1076 PF00425 chorismate binding enzyme BF39_1077 PF00501 AMP-binding enzyme BF39_1077 PF13193 AMP-binding enzyme C-terminal domain BF39_1078 PF00857 Isochorismatase family BF39_1078 PF00550 Phosphopantetheine attachment site BF39_1079 PF00975 Thioesterase domain BF39_1079 PF00501 AMP-binding enzyme BF39_1079 PF13193 AMP-binding enzyme C-terminal domain BF39_1079 PF00550 Phosphopantetheine attachment site BF39_1079 PF00668 Condensation domain BF39_1080 PF03621 MbtH-like protein BF39_1081 PF07690 Major Facilitator Superfamily BF39_1084 PF00216 Bacterial DNA-binding protein BF39_1086 PF05163 DinB family BF39_1087 PF00082 Subtilase family BF39_1088 PF01235 Sodium:alanine symporter family BF39_1091 PF16291 Domain of unknown function (DUF4937 BF39_1092 PF00849 RNA pseudouridylate synthase BF39_1092 PF01479 S4 domain BF39_1093 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF39_1093 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF39_1093 PF02824 TGS domain BF39_1093 PF03129 Anticodon binding domain BF39_1098 PF12146 Serine aminopeptidase, S33 BF39_1099 PF07690 Major Facilitator Superfamily BF39_1104 PF13649 Methyltransferase domain BF39_1113 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF39_1113 PF00753 Metallo-beta-lactamase superfamily BF39_1115 PF03176 MMPL family BF39_1117 PF00302 Chloramphenicol acetyltransferase BF39_112 PF07972 NrdI Flavodoxin like BF39_1120 PF00583 Acetyltransferase (GNAT) family BF39_1128 PF13302 Acetyltransferase (GNAT) domain BF39_113 PF02867 Ribonucleotide reductase, barrel domain BF39_113 PF08343 Ribonucleotide reductase N-terminal BF39_113 PF00317 Ribonucleotide reductase, all-alpha domain BF39_1130 PF00313 'Cold-shock' DNA-binding domain BF39_1142 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_1142 PF03466 LysR substrate binding domain BF39_1143 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF39_1143 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF39_1146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_1146 PF03466 LysR substrate binding domain BF39_1147 PF03475 3-alpha domain BF39_1147 PF03473 MOSC domain BF39_115 PF02867 Ribonucleotide reductase, barrel domain BF39_115 PF08343 Ribonucleotide reductase N-terminal BF39_115 PF00317 Ribonucleotide reductase, all-alpha domain BF39_1150 PF00005 ABC transporter BF39_1150 PF00664 ABC transporter transmembrane region BF39_1151 PF00005 ABC transporter BF39_1151 PF00664 ABC transporter transmembrane region BF39_1154 PF01810 LysE type translocator BF39_1155 PF01381 Helix-turn-helix BF39_1155 PF07883 Cupin domain BF39_1159 PF00890 FAD binding domain BF39_116 PF00268 Ribonucleotide reductase, small chain BF39_1160 PF12680 SnoaL-like domain BF39_1160 PF08281 Sigma-70, region 4 BF39_1160 PF04542 Sigma-70 region 2 BF39_1165 PF02638 Glycosyl hydrolase-like 10 BF39_1167 PF02378 Phosphotransferase system, EIIC BF39_1169 PF03702 Anhydro-N-acetylmuramic acid kinase BF39_117 PF00392 Bacterial regulatory proteins, gntR family BF39_1170 PF01869 BadF/BadG/BcrA/BcrD ATPase family BF39_1171 PF02660 Glycerol-3-phosphate acyltransferase BF39_1172 PF00266 Aminotransferase class-V BF39_1173 PF00291 Pyridoxal-phosphate dependent enzyme BF39_1175 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF39_1175 PF00753 Metallo-beta-lactamase superfamily BF39_1178 PF00270 DEAD/DEAH box helicase BF39_1178 PF00271 Helicase conserved C-terminal domain BF39_118 PF00005 ABC transporter BF39_1180 PF00440 Bacterial regulatory proteins, tetR family BF39_1180 PF17932 Tetracyclin repressor-like, C-terminal domain BF39_1183 PF00005 ABC transporter BF39_1183 PF02687 FtsX-like permease family BF39_1183 PF12704 MacB-like periplasmic core domain BF39_1184 PF03848 Tellurite resistance protein TehB BF39_1184 PF09313 Domain of unknown function (DUF1971) BF39_1186 PF08241 Methyltransferase domain BF39_1187 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF39_1187 PF00205 Thiamine pyrophosphate enzyme, central domain BF39_1187 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF39_1188 PF12802 MarR family BF39_1189 PF00300 Histidine phosphatase superfamily (branch 1) BF39_1190 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BF39_1196 PF01546 Peptidase family M20/M25/M40 BF39_1196 PF07687 Peptidase dimerisation domain BF39_120 PF00005 ABC transporter BF39_1200 PF08281 Sigma-70, region 4 BF39_1200 PF04542 Sigma-70 region 2 BF39_1202 PF00905 Penicillin binding protein transpeptidase domain BF39_1202 PF03717 Penicillin-binding Protein dimerisation domain BF39_1206 PF01569 PAP2 superfamily BF39_1207 PF00356 Bacterial regulatory proteins, lacI family BF39_1208 PF07690 Major Facilitator Superfamily BF39_1209 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF39_1209 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF39_1210 PF00294 pfkB family carbohydrate kinase BF39_1211 PF00171 Aldehyde dehydrogenase family BF39_1212 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF39_1212 PF00205 Thiamine pyrophosphate enzyme, central domain BF39_1212 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF39_1213 PF01261 Xylose isomerase-like TIM barrel BF39_1214 PF01116 Fructose-bisphosphate aldolase class-II BF39_1215 PF04962 KduI/IolB family BF39_1219 PF02872 5'-nucleotidase, C-terminal domain BF39_1219 PF00149 Calcineurin-like phosphoesterase BF39_1220 PF00149 Calcineurin-like phosphoesterase BF39_1220 PF02872 5'-nucleotidase, C-terminal domain BF39_1222 PF18801 response regulator aspartate phosphatase H, N terminal BF39_1223 PF01381 Helix-turn-helix BF39_1226 PF02557 D-alanyl-D-alanine carboxypeptidase BF39_1228 PF00395 S-layer homology domain BF39_1228 PF01520 N-acetylmuramoyl-L-alanine amidase BF39_1231 PF00440 Bacterial regulatory proteins, tetR family BF39_1234 PF00563 EAL domain BF39_1234 PF00990 Diguanylate cyclase, GGDEF domain BF39_1234 PF03707 Bacterial signalling protein N terminal repeat BF39_1235 PF13302 Acetyltransferase (GNAT) domain BF39_1237 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_1238 PF00581 Rhodanese-like domain BF39_124 PF01037 Lrp/AsnC ligand binding domain BF39_1241 PF00005 ABC transporter BF39_1246 PF02770 Acyl-CoA dehydrogenase, middle domain BF39_1246 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF39_1246 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF39_1247 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF39_1247 PF00289 Biotin carboxylase, N-terminal domain BF39_1247 PF02785 Biotin carboxylase C-terminal domain BF39_1248 PF00364 Biotin-requiring enzyme BF39_1249 PF00682 HMGL-like BF39_1250 PF00378 Enoyl-CoA hydratase/isomerase BF39_1251 PF01039 Carboxyl transferase domain BF39_1252 PF16177 Acetyl-coenzyme A synthetase N-terminus BF39_1252 PF00501 AMP-binding enzyme BF39_1252 PF13193 AMP-binding enzyme C-terminal domain BF39_1254 PF00583 Acetyltransferase (GNAT) family BF39_1255 PF00485 Phosphoribulokinase / Uridine kinase family BF39_1257 PF05163 DinB family BF39_1258 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_1258 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_1259 PF00512 His Kinase A (phospho-acceptor) domain BF39_1259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_126 PF00857 Isochorismatase family BF39_1260 PF00486 Transcriptional regulatory protein, C terminal BF39_1260 PF00072 Response regulator receiver domain BF39_1261 PF01966 HD domain BF39_1262 PF13021 Domain of unknown function (DUF3885) BF39_1263 PF01048 Phosphorylase superfamily BF39_1267 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF39_1267 PF03413 Peptidase propeptide and YPEB domain BF39_1267 PF01447 Thermolysin metallopeptidase, catalytic domain BF39_1267 PF07504 Fungalysin/Thermolysin Propeptide Motif BF39_1268 PF07504 Fungalysin/Thermolysin Propeptide Motif BF39_1268 PF03413 Peptidase propeptide and YPEB domain BF39_1268 PF01447 Thermolysin metallopeptidase, catalytic domain BF39_1268 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF39_1272 PF17755 UvrA DNA-binding domain BF39_1272 PF17760 UvrA interaction domain BF39_1272 PF17755 UvrA DNA-binding domain BF39_1272 PF17760 UvrA interaction domain BF39_1275 PF00144 Beta-lactamase BF39_1276 PF09278 MerR, DNA binding BF39_1276 PF00376 MerR family regulatory protein BF39_1277 PF07690 Major Facilitator Superfamily BF39_128 PF02016 LD-carboxypeptidase N-terminal domain BF39_128 PF17676 LD-carboxypeptidase C-terminal domain BF39_1281 PF01636 Phosphotransferase enzyme family BF39_1282 PF12833 Helix-turn-helix domain BF39_1285 PF00155 Aminotransferase class I and II BF39_1285 PF00392 Bacterial regulatory proteins, gntR family BF39_1287 PF08240 Alcohol dehydrogenase GroES-like domain BF39_1287 PF00107 Zinc-binding dehydrogenase BF39_129 PF03060 Nitronate monooxygenase BF39_1290 PF01225 Mur ligase family, catalytic domain BF39_1290 PF02875 Mur ligase family, glutamate ligase domain BF39_1290 PF08245 Mur ligase middle domain BF39_1291 PF02875 Mur ligase family, glutamate ligase domain BF39_1291 PF08245 Mur ligase middle domain BF39_1291 PF01225 Mur ligase family, catalytic domain BF39_1294 PF07486 Cell Wall Hydrolase BF39_1296 PF00072 Response regulator receiver domain BF39_1296 PF00486 Transcriptional regulatory protein, C terminal BF39_1298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_130 PF04914 DltD protein BF39_1303 PF00005 ABC transporter BF39_1304 PF02687 FtsX-like permease family BF39_1305 PF02687 FtsX-like permease family BF39_1309 PF03447 Homoserine dehydrogenase, NAD binding domain BF39_1309 PF00742 Homoserine dehydrogenase BF39_1309 PF01842 ACT domain BF39_131 PF00550 Phosphopantetheine attachment site BF39_1310 PF00392 Bacterial regulatory proteins, gntR family BF39_1310 PF00155 Aminotransferase class I and II BF39_1311 PF01820 D-ala D-ala ligase N-terminus BF39_1311 PF07478 D-ala D-ala ligase C-terminus BF39_1312 PF03070 TENA/THI-4/PQQC family BF39_132 PF03062 MBOAT, membrane-bound O-acyltransferase family BF39_1328 PF00067 Cytochrome P450 BF39_133 PF00501 AMP-binding enzyme BF39_133 PF13193 AMP-binding enzyme C-terminal domain BF39_1330 PF00132 Bacterial transferase hexapeptide (six repeats) BF39_1331 PF07561 Domain of Unknown Function (DUF1540) BF39_1333 PF00067 Cytochrome P450 BF39_1337 PF13188 PAS domain BF39_1337 PF00989 PAS fold BF39_1337 PF00512 His Kinase A (phospho-acceptor) domain BF39_1337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_1337 PF13426 PAS domain BF39_1339 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF39_1340 PF01177 Asp/Glu/Hydantoin racemase BF39_1341 PF07155 ECF-type riboflavin transporter, S component BF39_1342 PF00005 ABC transporter BF39_1342 PF12558 ATP-binding cassette cobalt transporter BF39_1345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_1345 PF00512 His Kinase A (phospho-acceptor) domain BF39_1348 PF08240 Alcohol dehydrogenase GroES-like domain BF39_1348 PF00107 Zinc-binding dehydrogenase BF39_135 PF01546 Peptidase family M20/M25/M40 BF39_135 PF07687 Peptidase dimerisation domain BF39_1358 PF01965 DJ-1/PfpI family BF39_1361 PF00144 Beta-lactamase BF39_1363 PF07690 Major Facilitator Superfamily BF39_1367 PF03009 Glycerophosphoryl diester phosphodiesterase family BF39_137 PF00258 Flavodoxin BF39_1370 PF00155 Aminotransferase class I and II BF39_1370 PF00392 Bacterial regulatory proteins, gntR family BF39_1371 PF00155 Aminotransferase class I and II BF39_1371 PF00392 Bacterial regulatory proteins, gntR family BF39_1372 PF00892 EamA-like transporter family BF39_1373 PF01270 Glycosyl hydrolases family 8 BF39_1375 PF00293 NUDIX domain BF39_1379 PF07690 Major Facilitator Superfamily BF39_1381 PF00293 NUDIX domain BF39_1381 PF09297 NADH pyrophosphatase zinc ribbon domain BF39_1382 PF00712 DNA polymerase III beta subunit, N-terminal domain BF39_1382 PF02767 DNA polymerase III beta subunit, central domain BF39_1382 PF02768 DNA polymerase III beta subunit, C-terminal domain BF39_1383 PF00293 NUDIX domain BF39_1386 PF12706 Beta-lactamase superfamily domain BF39_1390 PF09234 Domain of unknown function (DUF1963) BF39_1396 PF01734 Patatin-like phospholipase BF39_1397 PF08000 Bacterial PH domain BF39_1399 PF12867 DinB superfamily BF39_140 PF01636 Phosphotransferase enzyme family BF39_1403 PF02673 Bacitracin resistance protein BacA BF39_1405 PF01541 GIY-YIG catalytic domain BF39_1413 PF01266 FAD dependent oxidoreductase BF39_1418 PF13419 Haloacid dehalogenase-like hydrolase BF39_1421 PF07859 alpha/beta hydrolase fold BF39_1423 PF00282 Pyridoxal-dependent decarboxylase conserved domain BF39_1424 PF00501 AMP-binding enzyme BF39_1424 PF13193 AMP-binding enzyme C-terminal domain BF39_1424 PF00668 Condensation domain BF39_1424 PF00550 Phosphopantetheine attachment site BF39_1426 PF00128 Alpha amylase, catalytic domain BF39_1426 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF39_1426 PF03714 Bacterial pullanase-associated domain BF39_1427 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF39_1427 PF01447 Thermolysin metallopeptidase, catalytic domain BF39_1427 PF03413 Peptidase propeptide and YPEB domain BF39_1427 PF07504 Fungalysin/Thermolysin Propeptide Motif BF39_1431 PF00344 SecY translocase BF39_1432 PF00308 Bacterial dnaA protein BF39_1432 PF11638 DnaA N-terminal domain BF39_1432 PF08299 Bacterial dnaA protein helix-turn-helix BF39_1433 PF00892 EamA-like transporter family BF39_1434 PF00392 Bacterial regulatory proteins, gntR family BF39_1434 PF00155 Aminotransferase class I and II BF39_1435 PF00561 alpha/beta hydrolase fold BF39_144 PF01554 MatE BF39_1440 PF06081 Aromatic acid exporter family member 1 BF39_1443 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF39_1444 PF14620 YpeB sporulation BF39_1444 PF03413 Peptidase propeptide and YPEB domain BF39_1445 PF01471 Putative peptidoglycan binding domain BF39_1445 PF07486 Cell Wall Hydrolase BF39_1448 PF03301 Tryptophan 2,3-dioxygenase BF39_1449 PF04199 Putative cyclase BF39_145 PF02673 Bacitracin resistance protein BacA BF39_1450 PF00266 Aminotransferase class-V BF39_1451 PF00440 Bacterial regulatory proteins, tetR family BF39_1451 PF08359 YsiA-like protein, C-terminal region BF39_1452 PF13344 Haloacid dehalogenase-like hydrolase BF39_1452 PF00293 NUDIX domain BF39_1457 PF02954 Bacterial regulatory protein, Fis family BF39_1457 PF01590 GAF domain BF39_1457 PF00158 Sigma-54 interaction domain BF39_1460 PF13302 Acetyltransferase (GNAT) domain BF39_1461 PF08220 DeoR-like helix-turn-helix domain BF39_1461 PF00455 DeoR C terminal sensor domain BF39_1464 PF00403 Heavy-metal-associated domain BF39_1464 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_1464 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF39_1465 PF02082 Transcriptional regulator BF39_1469 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF39_1469 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_1470 PF02817 e3 binding domain BF39_1470 PF00364 Biotin-requiring enzyme BF39_1470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF39_1471 PF02779 Transketolase, pyrimidine binding domain BF39_1471 PF02780 Transketolase, C-terminal domain BF39_1472 PF00676 Dehydrogenase E1 component BF39_1474 PF00106 short chain dehydrogenase BF39_1475 PF04229 GrpB protein BF39_1475 PF13673 Acetyltransferase (GNAT) domain BF39_148 PF01047 MarR family BF39_1481 PF00528 Binding-protein-dependent transport system inner membrane component BF39_1482 PF00005 ABC transporter BF39_1482 PF00571 CBS domain BF39_1483 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF39_1484 PF00574 Clp protease BF39_1487 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF39_1488 PF13673 Acetyltransferase (GNAT) domain BF39_1489 PF18416 N-acetylglucosamine binding protein domain 2 BF39_1489 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF39_1493 PF10990 Protein of unknown function (DUF2809) BF39_1498 PF00753 Metallo-beta-lactamase superfamily BF39_1498 PF13567 Domain of unknown function (DUF4131) BF39_1498 PF03772 Competence protein BF39_150 PF00375 Sodium:dicarboxylate symporter family BF39_1508 PF13538 UvrD-like helicase C-terminal domain BF39_151 PF02386 Cation transport protein BF39_1511 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BF39_1512 PF00271 Helicase conserved C-terminal domain BF39_1512 PF09382 RQC domain BF39_1512 PF16124 RecQ zinc-binding BF39_1512 PF00570 HRDC domain BF39_1512 PF00270 DEAD/DEAH box helicase BF39_1520 PF02833 DHHA2 domain BF39_1520 PF01368 DHH family BF39_1521 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF39_1521 PF18416 N-acetylglucosamine binding protein domain 2 BF39_1523 PF02627 Carboxymuconolactone decarboxylase family BF39_1524 PF01235 Sodium:alanine symporter family BF39_1525 PF00171 Aldehyde dehydrogenase family BF39_1526 PF00701 Dihydrodipicolinate synthetase family BF39_1527 PF05544 Proline racemase BF39_1528 PF05544 Proline racemase BF39_1529 PF01266 FAD dependent oxidoreductase BF39_153 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF39_1530 PF02954 Bacterial regulatory protein, Fis family BF39_1530 PF00158 Sigma-54 interaction domain BF39_1530 PF13188 PAS domain BF39_1532 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_1532 PF04324 BFD-like [2Fe-2S] binding domain BF39_1535 PF08876 Domain of unknown function (DUF1836) BF39_1536 PF09335 SNARE associated Golgi protein BF39_1539 PF04914 DltD protein BF39_1540 PF00958 GMP synthase C terminal domain BF39_1540 PF13302 Acetyltransferase (GNAT) domain BF39_1540 PF13673 Acetyltransferase (GNAT) domain BF39_1540 PF00117 Glutamine amidotransferase class-I BF39_1540 PF03352 Methyladenine glycosylase BF39_1541 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_1542 PF00877 NlpC/P60 family BF39_1542 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BF39_1543 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF39_1543 PF13378 Enolase C-terminal domain-like BF39_1546 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF39_155 PF03698 Uncharacterised protein family (UPF0180) BF39_1551 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF39_1551 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF39_1552 PF00512 His Kinase A (phospho-acceptor) domain BF39_1552 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_1552 PF16736 Single Cache-like BF39_1552 PF00989 PAS fold BF39_1553 PF00486 Transcriptional regulatory protein, C terminal BF39_1553 PF00072 Response regulator receiver domain BF39_1557 PF01048 Phosphorylase superfamily BF39_1559 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF39_1560 PF01432 Peptidase family M3 BF39_1560 PF08439 Oligopeptidase F BF39_1563 PF02645 Uncharacterised protein, DegV family COG1307 BF39_1567 PF07690 Major Facilitator Superfamily BF39_1569 PF04519 Polymer-forming cytoskeletal BF39_1570 PF13171 Protein of unknown function (DUF4004) BF39_1571 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_1571 PF12793 Sugar transport-related sRNA regulator N-term BF39_1572 PF07690 Major Facilitator Superfamily BF39_1576 PF04226 Transglycosylase associated protein BF39_1577 PF01156 Inosine-uridine preferring nucleoside hydrolase BF39_1579 PF08241 Methyltransferase domain BF39_158 PF01063 Amino-transferase class IV BF39_1586 PF00155 Aminotransferase class I and II BF39_1587 PF07977 FabA-like domain BF39_1588 PF03630 Fumble BF39_159 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF39_159 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF39_159 PF00205 Thiamine pyrophosphate enzyme, central domain BF39_1592 PF00005 ABC transporter BF39_16 PF02817 e3 binding domain BF39_16 PF00364 Biotin-requiring enzyme BF39_16 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF39_160 PF01842 ACT domain BF39_160 PF10369 Small subunit of acetolactate synthase BF39_1601 PF01594 AI-2E family transporter BF39_1603 PF00296 Luciferase-like monooxygenase BF39_1604 PF00528 Binding-protein-dependent transport system inner membrane component BF39_1605 PF09084 NMT1/THI5 like BF39_1606 PF00005 ABC transporter BF39_161 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF39_161 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF39_1614 PF02522 Aminoglycoside 3-N-acetyltransferase BF39_1619 PF13536 Putative multidrug resistance efflux transporter BF39_162 PF08502 LeuA allosteric (dimerisation) domain BF39_162 PF00682 HMGL-like BF39_1620 PF12867 DinB superfamily BF39_1624 PF08713 DNA alkylation repair enzyme BF39_1626 PF01522 Polysaccharide deacetylase BF39_1628 PF03741 Integral membrane protein TerC family BF39_1629 PF00884 Sulfatase BF39_163 PF00180 Isocitrate/isopropylmalate dehydrogenase BF39_1630 PF12848 ABC transporter BF39_1630 PF00005 ABC transporter BF39_1632 PF03176 MMPL family BF39_1633 PF03176 MMPL family BF39_1634 PF00440 Bacterial regulatory proteins, tetR family BF39_1634 PF16295 Tetracyclin repressor-like, C-terminal domain BF39_1636 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF39_1637 PF01842 ACT domain BF39_1637 PF02153 Prephenate dehydrogenase BF39_1638 PF00155 Aminotransferase class I and II BF39_1639 PF01264 Chorismate synthase BF39_164 PF00330 Aconitase family (aconitate hydratase) BF39_1640 PF00793 DAHP synthetase I family BF39_1640 PF01817 Chorismate mutase type II BF39_1645 PF01636 Phosphotransferase enzyme family BF39_1648 PF01476 LysM domain BF39_1648 PF06725 3D domain BF39_165 PF00694 Aconitase C-terminal domain BF39_1650 PF04542 Sigma-70 region 2 BF39_1650 PF08281 Sigma-70, region 4 BF39_1655 PF06039 Malate:quinone oxidoreductase (Mqo) BF39_1656 PF13407 Periplasmic binding protein domain BF39_1657 PF02653 Branched-chain amino acid transport system / permease component BF39_1658 PF02653 Branched-chain amino acid transport system / permease component BF39_1659 PF00005 ABC transporter BF39_166 PF13393 Histidyl-tRNA synthetase BF39_1660 PF04198 Putative sugar-binding domain BF39_1660 PF00325 Bacterial regulatory proteins, crp family BF39_1661 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_1661 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_1662 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_1662 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_1664 PF01791 DeoC/LacD family aldolase BF39_1668 PF03992 Antibiotic biosynthesis monooxygenase BF39_167 PF01634 ATP phosphoribosyltransferase BF39_1672 PF01773 Na+ dependent nucleoside transporter N-terminus BF39_1672 PF07662 Na+ dependent nucleoside transporter C-terminus BF39_1673 PF00171 Aldehyde dehydrogenase family BF39_1674 PF00696 Amino acid kinase family BF39_1674 PF01472 PUA domain BF39_1675 PF03807 NADP oxidoreductase coenzyme F420-dependent BF39_1675 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF39_1676 PF01546 Peptidase family M20/M25/M40 BF39_1677 PF09339 IclR helix-turn-helix domain BF39_1677 PF01614 Bacterial transcriptional regulator BF39_1678 PF00324 Amino acid permease BF39_1679 PF01139 tRNA-splicing ligase RtcB BF39_168 PF00815 Histidinol dehydrogenase BF39_1680 PF00487 Fatty acid desaturase BF39_1681 PF00245 Alkaline phosphatase BF39_1682 PF11188 Protein of unknown function (DUF2975) BF39_1683 PF13443 Cro/C1-type HTH DNA-binding domain BF39_1686 PF10086 YhfC intramembrane metalloprotease BF39_1688 PF00072 Response regulator receiver domain BF39_1688 PF04397 LytTr DNA-binding domain BF39_169 PF00475 Imidazoleglycerol-phosphate dehydratase BF39_1690 PF13302 Acetyltransferase (GNAT) domain BF39_1691 PF12681 Glyoxalase-like domain BF39_1695 PF17863 AAA lid domain BF39_1695 PF07726 ATPase family associated with various cellular activities (AAA) BF39_1698 PF07690 Major Facilitator Superfamily BF39_17 PF00676 Dehydrogenase E1 component BF39_17 PF02779 Transketolase, pyrimidine binding domain BF39_17 PF16870 2-oxoglutarate dehydrogenase C-terminal BF39_170 PF00117 Glutamine amidotransferase class-I BF39_1700 PF00535 Glycosyl transferase family 2 BF39_1703 PF00535 Glycosyl transferase family 2 BF39_1705 PF00535 Glycosyl transferase family 2 BF39_1707 PF00202 Aminotransferase class-III BF39_1708 PF00199 Catalase BF39_1708 PF06628 Catalase-related immune-responsive BF39_171 PF00977 Histidine biosynthesis protein BF39_1710 PF13382 Adenine deaminase C-terminal domain BF39_1710 PF01979 Amidohydrolase family BF39_1711 PF00144 Beta-lactamase BF39_1716 PF07726 ATPase family associated with various cellular activities (AAA) BF39_1716 PF17863 AAA lid domain BF39_1718 PF00881 Nitroreductase family BF39_1719 PF01047 MarR family BF39_172 PF00977 Histidine biosynthesis protein BF39_1720 PF00009 Elongation factor Tu GTP binding domain BF39_1720 PF14492 Elongation Factor G, domain II BF39_1720 PF00679 Elongation factor G C-terminus BF39_1720 PF03764 Elongation factor G, domain IV BF39_1722 PF00293 NUDIX domain BF39_1725 PF00005 ABC transporter BF39_1726 PF00392 Bacterial regulatory proteins, gntR family BF39_1728 PF00005 ABC transporter BF39_1728 PF02687 FtsX-like permease family BF39_1728 PF12704 MacB-like periplasmic core domain BF39_173 PF01502 Phosphoribosyl-AMP cyclohydrolase BF39_1733 PF12833 Helix-turn-helix domain BF39_1734 PF00583 Acetyltransferase (GNAT) family BF39_1737 PF00892 EamA-like transporter family BF39_1738 PF00392 Bacterial regulatory proteins, gntR family BF39_1738 PF00155 Aminotransferase class I and II BF39_1739 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BF39_174 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF39_1740 PF13031 Protein of unknown function (DUF3892) BF39_1743 PF00512 His Kinase A (phospho-acceptor) domain BF39_1743 PF00672 HAMP domain BF39_1744 PF00072 Response regulator receiver domain BF39_1744 PF00486 Transcriptional regulatory protein, C terminal BF39_1745 PF00561 alpha/beta hydrolase fold BF39_175 PF02811 PHP domain BF39_1751 PF01925 Sulfite exporter TauE/SafE BF39_1752 PF13302 Acetyltransferase (GNAT) domain BF39_1753 PF00324 Amino acid permease BF39_1755 PF08713 DNA alkylation repair enzyme BF39_1756 PF10898 Protein of unknown function (DUF2716) BF39_1760 PF00293 NUDIX domain BF39_1762 PF10502 Signal peptidase, peptidase S26 BF39_1765 PF02146 Sir2 family BF39_1766 PF01470 Pyroglutamyl peptidase BF39_177 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF39_177 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF39_1770 PF03746 LamB/YcsF family BF39_1771 PF02626 Carboxyltransferase domain, subdomain A and B BF39_1772 PF02682 Carboxyltransferase domain, subdomain C and D BF39_1773 PF09339 IclR helix-turn-helix domain BF39_1773 PF01614 Bacterial transcriptional regulator BF39_1774 PF10502 Signal peptidase, peptidase S26 BF39_1775 PF03932 CutC family BF39_1776 PF07454 Stage II sporulation protein P (SpoIIP) BF39_1779 PF02770 Acyl-CoA dehydrogenase, middle domain BF39_1779 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF39_1779 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BF39_178 PF01066 CDP-alcohol phosphatidyltransferase BF39_1786 PF02915 Rubrerythrin BF39_1788 PF00440 Bacterial regulatory proteins, tetR family BF39_1789 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF39_1789 PF00391 PEP-utilising enzyme, mobile domain BF39_179 PF00884 Sulfatase BF39_1790 PF00753 Metallo-beta-lactamase superfamily BF39_1793 PF07875 Coat F domain BF39_1795 PF08892 YqcI/YcgG family BF39_1796 PF01810 LysE type translocator BF39_1797 PF00324 Amino acid permease BF39_1798 PF00324 Amino acid permease BF39_18 PF01381 Helix-turn-helix BF39_1800 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF39_1801 PF10710 Protein of unknown function (DUF2512) BF39_1802 PF11553 Protein of unknown function (DUF3231) BF39_1803 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF39_1804 PF00107 Zinc-binding dehydrogenase BF39_1804 PF08240 Alcohol dehydrogenase GroES-like domain BF39_1804 PF13823 Alcohol dehydrogenase GroES-associated BF39_1807 PF00206 Lyase BF39_1807 PF10415 Fumarase C C-terminus BF39_1808 PF00710 Asparaginase, N-terminal BF39_1808 PF17763 Glutaminase/Asparaginase C-terminal domain BF39_1809 PF01381 Helix-turn-helix BF39_181 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF39_181 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF39_1811 PF01541 GIY-YIG catalytic domain BF39_1811 PF12826 Helix-hairpin-helix motif BF39_1811 PF02151 UvrB/uvrC motif BF39_1811 PF08459 UvrC Helix-hairpin-helix N-terminal BF39_1812 PF13520 Amino acid permease BF39_1813 PF05525 Branched-chain amino acid transport protein BF39_1814 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF39_1814 PF03807 NADP oxidoreductase coenzyme F420-dependent BF39_1815 PF13564 DoxX-like family BF39_1816 PF00390 Malic enzyme, N-terminal domain BF39_1816 PF03949 Malic enzyme, NAD binding domain BF39_1818 PF05504 Spore germination B3/ GerAC like, C-terminal BF39_1819 PF05504 Spore germination B3/ GerAC like, C-terminal BF39_1820 PF03845 Spore germination protein BF39_1821 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_1822 PF08664 YcbB domain BF39_1822 PF00072 Response regulator receiver domain BF39_1823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_1824 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_1825 PF04960 Glutaminase BF39_1827 PF01235 Sodium:alanine symporter family BF39_183 PF01507 Phosphoadenosine phosphosulfate reductase family BF39_1833 PF00149 Calcineurin-like phosphoesterase BF39_1833 PF02872 5'-nucleotidase, C-terminal domain BF39_1833 PF17936 Bacterial Ig domain BF39_1834 PF06628 Catalase-related immune-responsive BF39_1834 PF00199 Catalase BF39_1835 PF00561 alpha/beta hydrolase fold BF39_1836 PF00857 Isochorismatase family BF39_1839 PF01979 Amidohydrolase family BF39_184 PF01747 ATP-sulfurylase BF39_184 PF14306 PUA-like domain BF39_1841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_1841 PF03466 LysR substrate binding domain BF39_1842 PF01047 MarR family BF39_1843 PF01544 CorA-like Mg2+ transporter protein BF39_1844 PF01544 CorA-like Mg2+ transporter protein BF39_1847 PF11181 Heat induced stress protein YflT BF39_1850 PF03073 TspO/MBR family BF39_1851 PF00875 DNA photolyase BF39_1851 PF03441 FAD binding domain of DNA photolyase BF39_1853 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BF39_1854 PF00361 Proton-conducting membrane transporter BF39_1854 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF39_1855 PF10057 Uncharacterized conserved protein (DUF2294) BF39_1857 PF01040 UbiA prenyltransferase family BF39_1858 PF00561 alpha/beta hydrolase fold BF39_1859 PF01297 Zinc-uptake complex component A periplasmic BF39_186 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF39_186 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF39_1860 PF00950 ABC 3 transport family BF39_1861 PF00005 ABC transporter BF39_1866 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF39_1867 PF01758 Sodium Bile acid symporter family BF39_1868 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_1869 PF01022 Bacterial regulatory protein, arsR family BF39_1873 PF00012 Hsp70 protein BF39_1876 PF01037 Lrp/AsnC ligand binding domain BF39_1879 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_188 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF39_1881 PF01609 Transposase DDE domain BF39_1886 PF00144 Beta-lactamase BF39_1889 PF12802 MarR family BF39_189 PF01903 CbiX BF39_1890 PF00067 Cytochrome P450 BF39_1890 PF00667 FAD binding domain BF39_1890 PF00258 Flavodoxin BF39_1890 PF00175 Oxidoreductase NAD-binding domain BF39_1891 PF07690 Major Facilitator Superfamily BF39_1896 PF00072 Response regulator receiver domain BF39_1896 PF00486 Transcriptional regulatory protein, C terminal BF39_1897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_1897 PF00672 HAMP domain BF39_1897 PF00512 His Kinase A (phospho-acceptor) domain BF39_1902 PF00291 Pyridoxal-phosphate dependent enzyme BF39_1906 PF00144 Beta-lactamase BF39_1908 PF01381 Helix-turn-helix BF39_191 PF00209 Sodium:neurotransmitter symporter family BF39_1911 PF00753 Metallo-beta-lactamase superfamily BF39_1912 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BF39_1914 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF39_1914 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF39_1915 PF04072 Leucine carboxyl methyltransferase BF39_1918 PF00005 ABC transporter BF39_1919 PF02687 FtsX-like permease family BF39_1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_1922 PF00512 His Kinase A (phospho-acceptor) domain BF39_1922 PF00672 HAMP domain BF39_1923 PF00486 Transcriptional regulatory protein, C terminal BF39_1923 PF00072 Response regulator receiver domain BF39_1925 PF01047 MarR family BF39_1926 PF00583 Acetyltransferase (GNAT) family BF39_1927 PF04299 Putative FMN-binding domain BF39_1928 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_1928 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_1929 PF07690 Major Facilitator Superfamily BF39_193 PF00375 Sodium:dicarboxylate symporter family BF39_1930 PF02589 LUD domain BF39_1931 PF11870 Domain of unknown function (DUF3390) BF39_1931 PF02589 LUD domain BF39_1931 PF13183 4Fe-4S dicluster domain BF39_1932 PF02754 Cysteine-rich domain BF39_1933 PF03466 LysR substrate binding domain BF39_1933 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_1935 PF02016 LD-carboxypeptidase N-terminal domain BF39_1935 PF17676 LD-carboxypeptidase C-terminal domain BF39_1939 PF07690 Major Facilitator Superfamily BF39_1940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF39_1940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF39_1941 PF05116 Sucrose-6F-phosphate phosphohydrolase BF39_1942 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF39_1943 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF39_1944 PF00356 Bacterial regulatory proteins, lacI family BF39_1945 PF18801 response regulator aspartate phosphatase H, N terminal BF39_1949 PF00817 impB/mucB/samB family BF39_1949 PF11799 impB/mucB/samB family C-terminal domain BF39_1949 PF11798 IMS family HHH motif BF39_195 PF03553 Na+/H+ antiporter family BF39_1952 PF00672 HAMP domain BF39_1952 PF02743 Cache domain BF39_1952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_1953 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_1953 PF00672 HAMP domain BF39_1953 PF02743 Cache domain BF39_1957 PF01554 MatE BF39_1958 PF01752 Collagenase BF39_1958 PF08453 Peptidase family M9 N-terminal BF39_1958 PF18496 Collagenase G catalytic helper subdomain BF39_1959 PF01609 Transposase DDE domain BF39_1960 PF02661 Fic/DOC family BF39_1961 PF07690 Major Facilitator Superfamily BF39_1962 PF00440 Bacterial regulatory proteins, tetR family BF39_1962 PF16859 Tetracyclin repressor-like, C-terminal domain BF39_1964 PF01022 Bacterial regulatory protein, arsR family BF39_1966 PF03313 Serine dehydratase alpha chain BF39_1967 PF01842 ACT domain BF39_1967 PF03315 Serine dehydratase beta chain BF39_1968 PF00202 Aminotransferase class-III BF39_1969 PF07503 HypF finger BF39_1969 PF01300 Telomere recombination BF39_1969 PF17788 HypF Kae1-like domain BF39_1969 PF00708 Acylphosphatase BF39_1970 PF02769 AIR synthase related protein, C-terminal domain BF39_1970 PF00586 AIR synthase related protein, N-terminal domain BF39_1971 PF00857 Isochorismatase family BF39_1972 PF01037 Lrp/AsnC ligand binding domain BF39_1973 PF13520 Amino acid permease BF39_1976 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF39_1976 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF39_1976 PF01842 ACT domain BF39_1977 PF00266 Aminotransferase class-V BF39_198 PF09922 Cell wall-active antibiotics response 4TMS YvqF BF39_1980 PF08281 Sigma-70, region 4 BF39_1980 PF04542 Sigma-70 region 2 BF39_1983 PF07883 Cupin domain BF39_1984 PF01497 Periplasmic binding protein BF39_1984 PF12833 Helix-turn-helix domain BF39_1985 PF01804 Penicillin amidase BF39_1987 PF00395 S-layer homology domain BF39_199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_199 PF07730 Histidine kinase BF39_199 PF00672 HAMP domain BF39_1994 PF14044 NETI protein BF39_1995 PF07690 Major Facilitator Superfamily BF39_1996 PF12697 Alpha/beta hydrolase family BF39_1997 PF01047 MarR family BF39_1998 PF07690 Major Facilitator Superfamily BF39_2 PF00291 Pyridoxal-phosphate dependent enzyme BF39_200 PF00196 Bacterial regulatory proteins, luxR family BF39_200 PF00072 Response regulator receiver domain BF39_2001 PF12679 ABC-2 family transporter protein BF39_2002 PF13732 Domain of unknown function (DUF4162) BF39_2002 PF00005 ABC transporter BF39_2003 PF13396 Phospholipase_D-nuclease N-terminal BF39_2005 PF17314 Family of unknown function (DUF5360) BF39_2006 PF00893 Small Multidrug Resistance protein BF39_2007 PF00440 Bacterial regulatory proteins, tetR family BF39_2008 PF17440 Thiol-activated cytolysin beta sandwich domain BF39_2008 PF01289 Thiol-activated cytolysin BF39_2009 PF02667 Short chain fatty acid transporter BF39_2011 PF02525 Flavodoxin-like fold BF39_2015 PF14256 YwiC-like protein BF39_2017 PF00005 ABC transporter BF39_2018 PF02361 Cobalt transport protein BF39_202 PF05525 Branched-chain amino acid transport protein BF39_2021 PF03737 Aldolase/RraA BF39_2022 PF03606 C4-dicarboxylate anaerobic carrier BF39_2023 PF04231 Endonuclease I BF39_2026 PF01381 Helix-turn-helix BF39_2027 PF02660 Glycerol-3-phosphate acyltransferase BF39_2028 PF04073 Aminoacyl-tRNA editing domain BF39_2029 PF03129 Anticodon binding domain BF39_2029 PF13393 Histidyl-tRNA synthetase BF39_2032 PF01638 HxlR-like helix-turn-helix BF39_2033 PF00881 Nitroreductase family BF39_2035 PF00391 PEP-utilising enzyme, mobile domain BF39_2035 PF02887 Pyruvate kinase, alpha/beta domain BF39_2035 PF00224 Pyruvate kinase, barrel domain BF39_2039 PF00005 ABC transporter BF39_204 PF08241 Methyltransferase domain BF39_2044 PF13419 Haloacid dehalogenase-like hydrolase BF39_2049 PF00293 NUDIX domain BF39_2049 PF13344 Haloacid dehalogenase-like hydrolase BF39_2051 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_2052 PF00480 ROK family BF39_2053 PF07690 Major Facilitator Superfamily BF39_2054 PF14602 Hexapeptide repeat of succinyl-transferase BF39_2054 PF12464 Maltose acetyltransferase BF39_2056 PF00005 ABC transporter BF39_2058 PF00579 tRNA synthetases class I (W and Y) BF39_2059 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF39_2059 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF39_2059 PF13288 DXP reductoisomerase C-terminal domain BF39_2060 PF01594 AI-2E family transporter BF39_2064 PF08241 Methyltransferase domain BF39_2066 PF07690 Major Facilitator Superfamily BF39_2070 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_2072 PF01595 Cyclin M transmembrane N-terminal domain BF39_2072 PF03471 Transporter associated domain BF39_2072 PF00571 CBS domain BF39_2073 PF13411 MerR HTH family regulatory protein BF39_2074 PF00892 EamA-like transporter family BF39_2075 PF00805 Pentapeptide repeats (8 copies) BF39_2076 PF06906 Protein of unknown function (DUF1272) BF39_2077 PF10282 Lactonase, 7-bladed beta-propeller BF39_2078 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_2078 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_2079 PF02447 GntP family permease BF39_2080 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF39_2081 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF39_2081 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF39_2082 PF02779 Transketolase, pyrimidine binding domain BF39_2082 PF00456 Transketolase, thiamine diphosphate binding domain BF39_2082 PF02780 Transketolase, C-terminal domain BF39_2083 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF39_2083 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF39_2084 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF39_2084 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF39_2085 PF00107 Zinc-binding dehydrogenase BF39_2085 PF08240 Alcohol dehydrogenase GroES-like domain BF39_2086 PF00296 Luciferase-like monooxygenase BF39_2088 PF00550 Phosphopantetheine attachment site BF39_2088 PF00698 Acyl transferase domain BF39_2088 PF08659 KR domain BF39_2088 PF14765 Polyketide synthase dehydratase BF39_2088 PF02801 Beta-ketoacyl synthase, C-terminal domain BF39_2088 PF00109 Beta-ketoacyl synthase, N-terminal domain BF39_2088 PF16197 Ketoacyl-synthetase C-terminal extension BF39_2088 PF00107 Zinc-binding dehydrogenase BF39_2088 PF08240 Alcohol dehydrogenase GroES-like domain BF39_2089 PF00106 short chain dehydrogenase BF39_209 PF00970 Oxidoreductase FAD-binding domain BF39_209 PF00175 Oxidoreductase NAD-binding domain BF39_209 PF00042 Globin BF39_2090 PF01447 Thermolysin metallopeptidase, catalytic domain BF39_2090 PF03413 Peptidase propeptide and YPEB domain BF39_2090 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF39_2090 PF07504 Fungalysin/Thermolysin Propeptide Motif BF39_2094 PF00248 Aldo/keto reductase family BF39_2095 PF07690 Major Facilitator Superfamily BF39_2097 PF03928 Haem-degrading BF39_2098 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_2104 PF03960 ArsC family BF39_2105 PF01638 HxlR-like helix-turn-helix BF39_2106 PF07702 UTRA domain BF39_2106 PF00392 Bacterial regulatory proteins, gntR family BF39_2107 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF39_2107 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF39_2110 PF01638 HxlR-like helix-turn-helix BF39_2111 PF01638 HxlR-like helix-turn-helix BF39_2112 PF00248 Aldo/keto reductase family BF39_2118 PF02567 Phenazine biosynthesis-like protein BF39_212 PF01925 Sulfite exporter TauE/SafE BF39_2122 PF13193 AMP-binding enzyme C-terminal domain BF39_2122 PF00501 AMP-binding enzyme BF39_2124 PF02525 Flavodoxin-like fold BF39_2125 PF01638 HxlR-like helix-turn-helix BF39_2128 PF01022 Bacterial regulatory protein, arsR family BF39_2129 PF01522 Polysaccharide deacetylase BF39_2129 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF39_213 PF01384 Phosphate transporter family BF39_2131 PF12791 Anti-sigma factor N-terminus BF39_2132 PF04542 Sigma-70 region 2 BF39_2133 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BF39_2133 PF00535 Glycosyl transferase family 2 BF39_2135 PF00440 Bacterial regulatory proteins, tetR family BF39_2139 PF05656 Protein of unknown function (DUF805) BF39_214 PF01865 Protein of unknown function DUF47 BF39_2140 PF01061 ABC-2 type transporter BF39_2141 PF13732 Domain of unknown function (DUF4162) BF39_2141 PF00005 ABC transporter BF39_2144 PF03063 Prismane/CO dehydrogenase family BF39_2147 PF00753 Metallo-beta-lactamase superfamily BF39_2148 PF01471 Putative peptidoglycan binding domain BF39_2148 PF01183 Glycosyl hydrolases family 25 BF39_215 PF00905 Penicillin binding protein transpeptidase domain BF39_215 PF00912 Transglycosylase BF39_2153 PF00144 Beta-lactamase BF39_2161 PF00753 Metallo-beta-lactamase superfamily BF39_2162 PF00107 Zinc-binding dehydrogenase BF39_2162 PF08240 Alcohol dehydrogenase GroES-like domain BF39_2163 PF00324 Amino acid permease BF39_2164 PF07690 Major Facilitator Superfamily BF39_2169 PF02585 GlcNAc-PI de-N-acetylase BF39_217 PF00989 PAS fold BF39_217 PF00512 His Kinase A (phospho-acceptor) domain BF39_217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_2170 PF08830 Protein of unknown function (DUF1806) BF39_2171 PF03600 Citrate transporter BF39_2175 PF01497 Periplasmic binding protein BF39_2177 PF01032 FecCD transport family BF39_2178 PF01032 FecCD transport family BF39_2179 PF05675 Protein of unknown function (DUF817) BF39_218 PF01904 Protein of unknown function DUF72 BF39_2180 PF02567 Phenazine biosynthesis-like protein BF39_2181 PF13170 Protein of unknown function (DUF4003) BF39_2184 PF10901 Protein of unknown function (DUF2690) BF39_2186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_2186 PF03466 LysR substrate binding domain BF39_2187 PF00107 Zinc-binding dehydrogenase BF39_2187 PF08240 Alcohol dehydrogenase GroES-like domain BF39_2190 PF00488 MutS domain V BF39_2190 PF01713 Smr domain BF39_2192 PF00128 Alpha amylase, catalytic domain BF39_2192 PF09154 Domain of unknown function (DUF1939) BF39_2193 PF00797 N-acetyltransferase BF39_2194 PF01432 Peptidase family M3 BF39_2194 PF08439 Oligopeptidase F BF39_2195 PF00144 Beta-lactamase BF39_2197 PF07690 Major Facilitator Superfamily BF39_2198 PF03466 LysR substrate binding domain BF39_2198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_220 PF00589 Phage integrase family BF39_2201 PF03009 Glycerophosphoryl diester phosphodiesterase family BF39_2204 PF01494 FAD binding domain BF39_2205 PF01022 Bacterial regulatory protein, arsR family BF39_2206 PF08240 Alcohol dehydrogenase GroES-like domain BF39_2206 PF00107 Zinc-binding dehydrogenase BF39_2207 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BF39_2208 PF18801 response regulator aspartate phosphatase H, N terminal BF39_221 PF00512 His Kinase A (phospho-acceptor) domain BF39_221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_221 PF16736 Single Cache-like BF39_221 PF00989 PAS fold BF39_2211 PF04299 Putative FMN-binding domain BF39_2212 PF04229 GrpB protein BF39_2214 PF01758 Sodium Bile acid symporter family BF39_2215 PF02913 FAD linked oxidases, C-terminal domain BF39_2215 PF01565 FAD binding domain BF39_2219 PF00132 Bacterial transferase hexapeptide (six repeats) BF39_222 PF01048 Phosphorylase superfamily BF39_2220 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF39_2221 PF00535 Glycosyl transferase family 2 BF39_2222 PF00378 Enoyl-CoA hydratase/isomerase BF39_2223 PF18496 Collagenase G catalytic helper subdomain BF39_2223 PF08453 Peptidase family M9 N-terminal BF39_2223 PF01752 Collagenase BF39_2224 PF02308 MgtC family BF39_2226 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_2227 PF04294 VanW like protein BF39_2229 PF13037 Domain of unknown function (DUF3898) BF39_2229 PF13039 Protein of unknown function (DUF3900) BF39_2233 PF00313 'Cold-shock' DNA-binding domain BF39_2235 PF00258 Flavodoxin BF39_2237 PF00293 NUDIX domain BF39_2239 PF00132 Bacterial transferase hexapeptide (six repeats) BF39_2241 PF00106 short chain dehydrogenase BF39_2243 PF00206 Lyase BF39_2243 PF14698 Argininosuccinate lyase C-terminal BF39_2245 PF01156 Inosine-uridine preferring nucleoside hydrolase BF39_2246 PF00474 Sodium:solute symporter family BF39_2248 PF00171 Aldehyde dehydrogenase family BF39_225 PF09924 Uncharacterised conserved protein (DUF2156) BF39_225 PF03706 Lysylphosphatidylglycerol synthase TM region BF39_2250 PF14151 YfhD-like protein BF39_2251 PF13249 Squalene-hopene cyclase N-terminal domain BF39_2251 PF13243 Squalene-hopene cyclase C-terminal domain BF39_2252 PF02681 Divergent PAP2 family BF39_2253 PF00892 EamA-like transporter family BF39_2254 PF06961 Protein of unknown function (DUF1294) BF39_2257 PF10609 NUBPL iron-transfer P-loop NTPase BF39_2259 PF02391 MoaE protein BF39_2260 PF03454 MoeA C-terminal region (domain IV) BF39_2260 PF03453 MoeA N-terminal region (domain I and II) BF39_2260 PF00994 Probable molybdopterin binding domain BF39_2261 PF00899 ThiF family BF39_2262 PF01226 Formate/nitrite transporter BF39_2263 PF06463 Molybdenum Cofactor Synthesis C BF39_2263 PF04055 Radical SAM superfamily BF39_2264 PF02634 FdhD/NarQ family BF39_2265 PF10057 Uncharacterized conserved protein (DUF2294) BF39_2266 PF07849 Protein of unknown function (DUF1641) BF39_2267 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF39_2267 PF01568 Molydopterin dinucleotide binding domain BF39_2267 PF00384 Molybdopterin oxidoreductase BF39_2267 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF39_2267 PF00037 4Fe-4S binding domain BF39_2269 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_2277 PF08241 Methyltransferase domain BF39_2278 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_2279 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_228 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF39_228 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF39_2280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_2281 PF00375 Sodium:dicarboxylate symporter family BF39_2282 PF03816 Cell envelope-related transcriptional attenuator domain BF39_2284 PF04542 Sigma-70 region 2 BF39_2284 PF08281 Sigma-70, region 4 BF39_2288 PF00005 ABC transporter BF39_2288 PF13732 Domain of unknown function (DUF4162) BF39_229 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_229 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_2290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF39_2290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF39_2291 PF03989 DNA gyrase C-terminal domain, beta-propeller BF39_2291 PF00521 DNA gyrase/topoisomerase IV, subunit A BF39_2292 PF00204 DNA gyrase B BF39_2292 PF00986 DNA gyrase B subunit, carboxyl terminus BF39_2292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_2292 PF01751 Toprim domain BF39_2293 PF13380 CoA binding domain BF39_2294 PF13180 PDZ domain BF39_2295 PF00072 Response regulator receiver domain BF39_2295 PF00486 Transcriptional regulatory protein, C terminal BF39_2296 PF04055 Radical SAM superfamily BF39_2297 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF39_2297 PF03477 ATP cone domain BF39_2298 PF02660 Glycerol-3-phosphate acyltransferase BF39_2299 PF01521 Iron-sulphur cluster biosynthesis BF39_230 PF07670 Nucleoside recognition BF39_2300 PF03061 Thioesterase superfamily BF39_2301 PF00704 Glycosyl hydrolases family 18 BF39_2301 PF01476 LysM domain BF39_2303 PF08177 Small acid-soluble spore protein N family BF39_2304 PF13040 Fur-regulated basic protein B BF39_2305 PF01336 OB-fold nucleic acid binding domain BF39_2305 PF14579 Helix-hairpin-helix motif BF39_2305 PF00929 Exonuclease BF39_2305 PF02811 PHP domain BF39_2305 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF39_2305 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF39_2305 PF11490 DNA polymerase III polC-type N-terminus II BF39_2306 PF00578 AhpC/TSA family BF39_2308 PF03412 Peptidase C39 family BF39_2308 PF00005 ABC transporter BF39_2308 PF00664 ABC transporter transmembrane region BF39_2309 PF00694 Aconitase C-terminal domain BF39_2309 PF00330 Aconitase family (aconitate hydratase) BF39_231 PF07670 Nucleoside recognition BF39_2311 PF01522 Polysaccharide deacetylase BF39_2313 PF08179 Small acid-soluble spore protein P family BF39_2315 PF07690 Major Facilitator Superfamily BF39_2317 PF01411 tRNA synthetases class II (A) BF39_2317 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF39_2317 PF02272 DHHA1 domain BF39_2318 PF00293 NUDIX domain BF39_2318 PF13344 Haloacid dehalogenase-like hydrolase BF39_232 PF01479 S4 domain BF39_232 PF00849 RNA pseudouridylate synthase BF39_2320 PF02803 Thiolase, C-terminal domain BF39_2320 PF00108 Thiolase, N-terminal domain BF39_2321 PF00501 AMP-binding enzyme BF39_2321 PF13193 AMP-binding enzyme C-terminal domain BF39_2322 PF02632 BioY family BF39_2323 PF13193 AMP-binding enzyme C-terminal domain BF39_2323 PF00501 AMP-binding enzyme BF39_2326 PF05532 CsbD-like BF39_233 PF00578 AhpC/TSA family BF39_2332 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_2332 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_2334 PF00989 PAS fold BF39_2334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_2334 PF13426 PAS domain BF39_2334 PF13188 PAS domain BF39_2334 PF00512 His Kinase A (phospho-acceptor) domain BF39_2335 PF01738 Dienelactone hydrolase family BF39_2336 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_2337 PF00474 Sodium:solute symporter family BF39_2338 PF01645 Conserved region in glutamate synthase BF39_2339 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF39_234 PF05140 ResB-like family BF39_2340 PF02559 CarD-like/TRCF domain BF39_2341 PF00491 Arginase family BF39_2342 PF01979 Amidohydrolase family BF39_2343 PF17392 Urocanase C-terminal domain BF39_2343 PF01175 Urocanase Rossmann-like domain BF39_2343 PF17391 Urocanase N-terminal domain BF39_2344 PF00221 Aromatic amino acid lyase BF39_2345 PF09021 HutP BF39_2346 PF01209 ubiE/COQ5 methyltransferase family BF39_235 PF01578 Cytochrome C assembly protein BF39_2350 PF11084 Protein of unknown function (DUF2621) BF39_2356 PF07301 Protein of unknown function (DUF1453) BF39_2357 PF02683 Cytochrome C biogenesis protein transmembrane region BF39_2359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_2359 PF03466 LysR substrate binding domain BF39_236 PF00486 Transcriptional regulatory protein, C terminal BF39_236 PF00072 Response regulator receiver domain BF39_2360 PF03788 LrgA family BF39_2361 PF04172 LrgB-like family BF39_2362 PF13344 Haloacid dehalogenase-like hydrolase BF39_2362 PF00293 NUDIX domain BF39_2364 PF01925 Sulfite exporter TauE/SafE BF39_2366 PF01510 N-acetylmuramoyl-L-alanine amidase BF39_2366 PF01471 Putative peptidoglycan binding domain BF39_2369 PF00664 ABC transporter transmembrane region BF39_2369 PF00005 ABC transporter BF39_237 PF00989 PAS fold BF39_237 PF00512 His Kinase A (phospho-acceptor) domain BF39_237 PF18698 Histidine kinase sensor domain BF39_237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_237 PF00672 HAMP domain BF39_2370 PF00005 ABC transporter BF39_2370 PF00664 ABC transporter transmembrane region BF39_2371 PF03672 Uncharacterised protein family (UPF0154) BF39_2372 PF10747 Sporulation inhibitor of replication protein SirA BF39_2373 PF00456 Transketolase, thiamine diphosphate binding domain BF39_2373 PF02780 Transketolase, C-terminal domain BF39_2373 PF02779 Transketolase, pyrimidine binding domain BF39_2374 PF01385 Probable transposase BF39_2374 PF07282 Putative transposase DNA-binding domain BF39_2374 PF12323 Helix-turn-helix domain BF39_2375 PF00528 Binding-protein-dependent transport system inner membrane component BF39_2376 PF00528 Binding-protein-dependent transport system inner membrane component BF39_2377 PF00005 ABC transporter BF39_238 PF01923 Cobalamin adenosyltransferase BF39_2380 PF00149 Calcineurin-like phosphoesterase BF39_2380 PF02872 5'-nucleotidase, C-terminal domain BF39_2381 PF05979 Bacterial protein of unknown function (DUF896) BF39_2382 PF00239 Resolvase, N terminal domain BF39_2383 PF01726 LexA DNA binding domain BF39_2383 PF00717 Peptidase S24-like BF39_2386 PF03551 Transcriptional regulator PadR-like family BF39_2394 PF01476 LysM domain BF39_2394 PF01510 N-acetylmuramoyl-L-alanine amidase BF39_2394 PF01471 Putative peptidoglycan binding domain BF39_2395 PF05105 Bacteriophage holin family BF39_241 PF12822 ECF transporter, substrate-specific component BF39_2427 PF08281 Sigma-70, region 4 BF39_243 PF14493 Helix-turn-helix domain BF39_2435 PF02511 Thymidylate synthase complementing protein BF39_2436 PF00145 C-5 cytosine-specific DNA methylase BF39_244 PF00270 DEAD/DEAH box helicase BF39_244 PF00271 Helicase conserved C-terminal domain BF39_245 PF02517 CPBP intramembrane metalloprotease BF39_2451 PF01381 Helix-turn-helix BF39_2455 PF00589 Phage integrase family BF39_2455 PF02899 Phage integrase, N-terminal SAM-like domain BF39_2456 PF00120 Glutamine synthetase, catalytic domain BF39_2456 PF03951 Glutamine synthetase, beta-Grasp domain BF39_2457 PF13411 MerR HTH family regulatory protein BF39_2458 PF06838 Methionine gamma-lyase BF39_2459 PF16360 GTP-binding GTPase Middle Region BF39_2459 PF01926 50S ribosome-binding GTPase BF39_2459 PF13167 GTP-binding GTPase N-terminal BF39_2460 PF13167 GTP-binding GTPase N-terminal BF39_2460 PF16360 GTP-binding GTPase Middle Region BF39_2460 PF01926 50S ribosome-binding GTPase BF39_2461 PF03458 UPF0126 domain BF39_2462 PF17866 AAA lid domain BF39_2462 PF00004 ATPase family associated with various cellular activities (AAA) BF39_2466 PF17209 Hfq protein BF39_2469 PF01476 LysM domain BF39_2469 PF06725 3D domain BF39_247 PF00149 Calcineurin-like phosphoesterase BF39_2470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF39_2470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF39_2471 PF00294 pfkB family carbohydrate kinase BF39_2472 PF08220 DeoR-like helix-turn-helix domain BF39_2472 PF00455 DeoR C terminal sensor domain BF39_2473 PF00465 Iron-containing alcohol dehydrogenase BF39_2474 PF00465 Iron-containing alcohol dehydrogenase BF39_2475 PF04238 Protein of unknown function (DUF420) BF39_2478 PF00324 Amino acid permease BF39_2479 PF00041 Fibronectin type III domain BF39_2479 PF00704 Glycosyl hydrolases family 18 BF39_248 PF02310 B12 binding domain BF39_248 PF13411 MerR HTH family regulatory protein BF39_248 PF02607 B12 binding domain BF39_2481 PF00149 Calcineurin-like phosphoesterase BF39_2481 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF39_2482 PF01226 Formate/nitrite transporter BF39_2483 PF00216 Bacterial DNA-binding protein BF39_2484 PF00403 Heavy-metal-associated domain BF39_2485 PF00403 Heavy-metal-associated domain BF39_2486 PF02583 Metal-sensitive transcriptional repressor BF39_2488 PF00756 Putative esterase BF39_2489 PF00005 ABC transporter BF39_249 PF05389 Negative regulator of genetic competence (MecA) BF39_2490 PF01032 FecCD transport family BF39_2491 PF01032 FecCD transport family BF39_2492 PF01497 Periplasmic binding protein BF39_2494 PF03372 Endonuclease/Exonuclease/phosphatase family BF39_2495 PF12833 Helix-turn-helix domain BF39_2495 PF02805 Metal binding domain of Ada BF39_2496 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF39_2496 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF39_2497 PF00730 HhH-GPD superfamily base excision DNA repair protein BF39_2497 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BF39_2498 PF07687 Peptidase dimerisation domain BF39_2498 PF01546 Peptidase family M20/M25/M40 BF39_250 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF39_250 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF39_2502 PF00561 alpha/beta hydrolase fold BF39_2503 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_2504 PF00990 Diguanylate cyclase, GGDEF domain BF39_2504 PF03707 Bacterial signalling protein N terminal repeat BF39_2504 PF00563 EAL domain BF39_2506 PF10787 Uncharacterised protein from bacillus cereus group BF39_2507 PF04172 LrgB-like family BF39_2508 PF03788 LrgA family BF39_2509 PF00392 Bacterial regulatory proteins, gntR family BF39_2509 PF00155 Aminotransferase class I and II BF39_2510 PF00561 alpha/beta hydrolase fold BF39_2510 PF00364 Biotin-requiring enzyme BF39_2511 PF02585 GlcNAc-PI de-N-acetylase BF39_2513 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BF39_2514 PF00082 Subtilase family BF39_2515 PF07486 Cell Wall Hydrolase BF39_2516 PF03275 UDP-galactopyranose mutase BF39_2517 PF00884 Sulfatase BF39_2518 PF00350 Dynamin family BF39_2520 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BF39_2521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_2521 PF00512 His Kinase A (phospho-acceptor) domain BF39_2522 PF00486 Transcriptional regulatory protein, C terminal BF39_2522 PF00072 Response regulator receiver domain BF39_2525 PF00005 ABC transporter BF39_2526 PF08676 MutL C terminal dimerisation domain BF39_2526 PF01119 DNA mismatch repair protein, C-terminal domain BF39_2527 PF01624 MutS domain I BF39_2527 PF05188 MutS domain II BF39_2527 PF05192 MutS domain III BF39_2527 PF05190 MutS family domain IV BF39_2527 PF00488 MutS domain V BF39_2528 PF10628 Outer spore coat protein E (CotE) BF39_2529 PF06133 Control of competence regulator ComK, YlbF/YmcA BF39_2530 PF04055 Radical SAM superfamily BF39_2530 PF00919 Uncharacterized protein family UPF0004 BF39_2530 PF01938 TRAM domain BF39_2531 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF39_2532 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BF39_2532 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF39_2532 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF39_2533 PF01244 Membrane dipeptidase (Peptidase family M19) BF39_2534 PF04232 Stage V sporulation protein S (SpoVS) BF39_2535 PF13277 YmdB-like protein BF39_2536 PF01966 HD domain BF39_2536 PF12072 Domain of unknown function (DUF3552) BF39_2536 PF00013 KH domain BF39_2537 PF00154 recA bacterial DNA recombination protein BF39_2538 PF00154 recA bacterial DNA recombination protein BF39_2539 PF02464 Competence-damaged protein BF39_2539 PF00994 Probable molybdopterin binding domain BF39_2539 PF18146 Damage-inducible protein CinA KH domain BF39_2540 PF01066 CDP-alcohol phosphatidyltransferase BF39_2541 PF13464 Domain of unknown function (DUF4115) BF39_2542 PF11868 Protein of unknown function (DUF3388) BF39_2543 PF11588 Protein of unknown function (DUF3243) BF39_2545 PF05193 Peptidase M16 inactive domain BF39_2545 PF00675 Insulinase (Peptidase family M16) BF39_2546 PF05193 Peptidase M16 inactive domain BF39_255 PF17763 Glutaminase/Asparaginase C-terminal domain BF39_255 PF00710 Asparaginase, N-terminal BF39_2552 PF07702 UTRA domain BF39_2552 PF00392 Bacterial regulatory proteins, gntR family BF39_2553 PF01580 FtsK/SpoIIIE family BF39_2553 PF09397 Ftsk gamma domain BF39_2553 PF17854 FtsK alpha domain BF39_2554 PF14035 YlzJ-like protein BF39_2555 PF00574 Clp protease BF39_2556 PF00753 Metallo-beta-lactamase superfamily BF39_2556 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF39_2556 PF17770 Ribonuclease J C-terminal domain BF39_2557 PF00701 Dihydrodipicolinate synthetase family BF39_2558 PF00696 Amino acid kinase family BF39_2558 PF13840 ACT domain BF39_2559 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF39_2559 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF39_2560 PF02441 Flavoprotein BF39_2561 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF39_2561 PF16924 Dipicolinate synthase subunit A N-terminal domain BF39_2562 PF05239 PRC-barrel domain BF39_2563 PF05193 Peptidase M16 inactive domain BF39_2563 PF00675 Insulinase (Peptidase family M16) BF39_2564 PF01522 Polysaccharide deacetylase BF39_2565 PF00575 S1 RNA binding domain BF39_2565 PF00013 KH domain BF39_2565 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF39_2565 PF01138 3' exoribonuclease family, domain 1 BF39_2565 PF03725 3' exoribonuclease family, domain 2 BF39_2566 PF00312 Ribosomal protein S15 BF39_2567 PF06574 FAD synthetase BF39_2567 PF01687 Riboflavin kinase BF39_2568 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF39_2568 PF16198 tRNA pseudouridylate synthase B C-terminal domain BF39_2569 PF02033 Ribosome-binding factor A BF39_257 PF02224 Cytidylate kinase BF39_2570 PF04456 Protein of unknown function (DUF503) BF39_2571 PF00009 Elongation factor Tu GTP binding domain BF39_2571 PF11987 Translation-initiation factor 2 BF39_2571 PF04760 Translation initiation factor IF-2, N-terminal region BF39_2572 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF39_2573 PF04296 Protein of unknown function (DUF448) BF39_2574 PF08529 NusA N-terminal domain BF39_2574 PF00575 S1 RNA binding domain BF39_2574 PF13184 NusA-like KH domain BF39_2575 PF02576 RimP N-terminal domain BF39_2575 PF17384 RimP C-terminal SH3 domain BF39_2576 PF00929 Exonuclease BF39_2576 PF14480 DNA polymerase III polC-type N-terminus I BF39_2576 PF02811 PHP domain BF39_2576 PF11490 DNA polymerase III polC-type N-terminus II BF39_2576 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF39_2576 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF39_2576 PF14579 Helix-hairpin-helix motif BF39_2577 PF03129 Anticodon binding domain BF39_2577 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF39_2577 PF04073 Aminoacyl-tRNA editing domain BF39_2578 PF02163 Peptidase family M50 BF39_2578 PF17820 PDZ domain BF39_2579 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF39_2579 PF13288 DXP reductoisomerase C-terminal domain BF39_2579 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF39_258 PF00575 S1 RNA binding domain BF39_2581 PF01255 Putative undecaprenyl diphosphate synthase BF39_2582 PF01765 Ribosome recycling factor BF39_2583 PF00696 Amino acid kinase family BF39_2584 PF00889 Elongation factor TS BF39_2585 PF00318 Ribosomal protein S2 BF39_2586 PF08222 CodY helix-turn-helix domain BF39_2586 PF06018 CodY GAF-like domain BF39_2587 PF00004 ATPase family associated with various cellular activities (AAA) BF39_2587 PF10431 C-terminal, D2-small domain, of ClpB protein BF39_2587 PF07724 AAA domain (Cdc48 subfamily) BF39_2588 PF00227 Proteasome subunit BF39_2589 PF02899 Phage integrase, N-terminal SAM-like domain BF39_2589 PF00589 Phage integrase family BF39_259 PF01070 FMN-dependent dehydrogenase BF39_2590 PF01134 Glucose inhibited division protein A BF39_2591 PF01131 DNA topoisomerase BF39_2591 PF01751 Toprim domain BF39_2591 PF01396 Topoisomerase DNA binding C4 zinc finger BF39_2593 PF02629 CoA binding domain BF39_2593 PF00549 CoA-ligase BF39_2594 PF08442 ATP-grasp domain BF39_2594 PF00549 CoA-ligase BF39_2595 PF01351 Ribonuclease HII BF39_2596 PF01926 50S ribosome-binding GTPase BF39_2597 PF10502 Signal peptidase, peptidase S26 BF39_2598 PF01245 Ribosomal protein L19 BF39_2599 PF01746 tRNA (Guanine-1)-methyltransferase BF39_260 PF14140 YpzI-like protein BF39_2600 PF05239 PRC-barrel domain BF39_2600 PF01782 RimM N-terminal domain BF39_2602 PF00886 Ribosomal protein S16 BF39_2603 PF02978 Signal peptide binding domain BF39_2603 PF02881 SRP54-type protein, helical bundle domain BF39_2603 PF00448 SRP54-type protein, GTPase domain BF39_2604 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BF39_2605 PF02881 SRP54-type protein, helical bundle domain BF39_2605 PF00448 SRP54-type protein, GTPase domain BF39_2606 PF02463 RecF/RecN/SMC N terminal domain BF39_2606 PF06470 SMC proteins Flexible Hinge Domain BF39_2607 PF00035 Double-stranded RNA binding motif BF39_2607 PF14622 Ribonuclease-III-like BF39_2608 PF00550 Phosphopantetheine attachment site BF39_2610 PF00698 Acyl transferase domain BF39_2611 PF02504 Fatty acid synthesis protein BF39_2612 PF03061 Thioesterase superfamily BF39_2613 PF00271 Helicase conserved C-terminal domain BF39_2613 PF17191 RecG wedge domain BF39_2613 PF00270 DEAD/DEAH box helicase BF39_2614 PF13684 Dihydroxyacetone kinase family BF39_2614 PF02734 DAK2 domain BF39_2615 PF03780 Asp23 family, cell envelope-related function BF39_2616 PF00830 Ribosomal L28 family BF39_2617 PF04263 Thiamin pyrophosphokinase, catalytic domain BF39_2617 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BF39_2618 PF00834 Ribulose-phosphate 3 epimerase family BF39_2619 PF03193 RsgA GTPase BF39_2619 PF16745 RsgA N-terminal domain BF39_262 PF14045 YIEGIA protein BF39_2620 PF03793 PASTA domain BF39_2620 PF00069 Protein kinase domain BF39_2622 PF04055 Radical SAM superfamily BF39_2623 PF01029 NusB family BF39_2623 PF01189 16S rRNA methyltransferase RsmB/F BF39_2624 PF02911 Formyl transferase, C-terminal domain BF39_2624 PF00551 Formyl transferase BF39_2625 PF01327 Polypeptide deformylase BF39_2626 PF04851 Type III restriction enzyme, res subunit BF39_2626 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BF39_2626 PF18074 Primosomal protein N C-terminal domain BF39_2626 PF17764 3′ DNA-binding domain (3′BD) BF39_2626 PF00271 Helicase conserved C-terminal domain BF39_2627 PF04127 DNA / pantothenate metabolism flavoprotein BF39_2627 PF02441 Flavoprotein BF39_2628 PF01192 RNA polymerase Rpb6 BF39_2629 PF00625 Guanylate kinase BF39_2630 PF04025 Domain of unknown function (DUF370) BF39_2631 PF08340 Domain of unknown function (DUF1732) BF39_2631 PF03755 YicC-like family, N-terminal region BF39_2632 PF00689 Cation transporting ATPase, C-terminus BF39_2632 PF00690 Cation transporter/ATPase, N-terminus BF39_2634 PF00557 Metallopeptidase family M24 BF39_2634 PF01321 Creatinase/Prolidase N-terminal domain BF39_264 PF01926 50S ribosome-binding GTPase BF39_264 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF39_2640 PF00156 Phosphoribosyl transferase domain BF39_2641 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF39_2642 PF01180 Dihydroorotate dehydrogenase BF39_2643 PF00175 Oxidoreductase NAD-binding domain BF39_2643 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF39_2644 PF02142 MGS-like domain BF39_2644 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF39_2644 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF39_2645 PF00117 Glutamine amidotransferase class-I BF39_2645 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF39_2646 PF01979 Amidohydrolase family BF39_2647 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF39_2647 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF39_2648 PF00860 Permease family BF39_2649 PF00156 Phosphoribosyl transferase domain BF39_265 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF39_265 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF39_2650 PF00849 RNA pseudouridylate synthase BF39_2650 PF01479 S4 domain BF39_2651 PF01252 Signal peptidase (SPase) II BF39_2653 PF00133 tRNA synthetases class I (I, L, M and V) BF39_2653 PF08264 Anticodon-binding domain of tRNA BF39_2653 PF06827 Zinc finger found in FPG and IleRS BF39_2654 PF05103 DivIVA protein BF39_2655 PF17774 Putative RNA-binding domain in YlmH BF39_2655 PF01479 S4 domain BF39_2656 PF02325 YGGT family BF39_2657 PF04472 Cell division protein SepF BF39_2658 PF01168 Alanine racemase, N-terminal domain BF39_2660 PF05239 PRC-barrel domain BF39_2661 PF04542 Sigma-70 region 2 BF39_2661 PF04539 Sigma-70 region 3 BF39_2661 PF04545 Sigma-70, region 4 BF39_2662 PF04545 Sigma-70, region 4 BF39_2662 PF04542 Sigma-70 region 2 BF39_2663 PF03419 Sporulation factor SpoIIGA BF39_2664 PF12327 FtsZ family, C-terminal domain BF39_2664 PF00091 Tubulin/FtsZ family, GTPase domain BF39_2665 PF02491 SHS2 domain inserted in FTSA BF39_2666 PF08478 POTRA domain, FtsQ-type BF39_2666 PF03799 Cell division protein FtsQ BF39_2667 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF39_2667 PF01565 FAD binding domain BF39_2668 PF04101 Glycosyltransferase family 28 C-terminal domain BF39_2668 PF03033 Glycosyltransferase family 28 N-terminal domain BF39_2669 PF01098 Cell cycle protein BF39_267 PF10966 Protein of unknown function (DUF2768) BF39_2670 PF02875 Mur ligase family, glutamate ligase domain BF39_2670 PF08245 Mur ligase middle domain BF39_2671 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BF39_2671 PF00953 Glycosyl transferase family 4 BF39_2672 PF08245 Mur ligase middle domain BF39_2672 PF01225 Mur ligase family, catalytic domain BF39_2672 PF02875 Mur ligase family, glutamate ligase domain BF39_2673 PF00905 Penicillin binding protein transpeptidase domain BF39_2673 PF03717 Penicillin-binding Protein dimerisation domain BF39_2673 PF03793 PASTA domain BF39_2675 PF04977 Septum formation initiator BF39_2676 PF01795 MraW methylase family BF39_2677 PF10079 Bacillithiol biosynthesis BshC BF39_2678 PF02558 Ketopantoate reductase PanE/ApbA BF39_2678 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF39_2679 PF00583 Acetyltransferase (GNAT) family BF39_2681 PF01783 Ribosomal L32p protein family BF39_2682 PF02620 Large ribosomal RNA subunit accumulation protein YceD BF39_269 PF09547 Stage IV sporulation protein A (spore_IV_A) BF39_2691 PF01510 N-acetylmuramoyl-L-alanine amidase BF39_2691 PF12123 N-acetylmuramoyl-l-alanine amidase BF39_2692 PF05105 Bacteriophage holin family BF39_270 PF00216 Bacterial DNA-binding protein BF39_2709 PF00574 Clp protease BF39_271 PF01227 GTP cyclohydrolase I BF39_2711 PF03354 Phage Terminase BF39_2715 PF10137 Predicted nucleotide-binding protein containing TIR-like domain BF39_2716 PF00589 Phage integrase family BF39_272 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BF39_2726 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_273 PF01209 ubiE/COQ5 methyltransferase family BF39_2731 PF04545 Sigma-70, region 4 BF39_2731 PF04539 Sigma-70 region 3 BF39_2731 PF04542 Sigma-70 region 2 BF39_2736 PF07319 Primosomal protein DnaI N-terminus BF39_2736 PF01695 IstB-like ATP binding protein BF39_274 PF00348 Polyprenyl synthetase BF39_2742 PF01381 Helix-turn-helix BF39_2746 PF01381 Helix-turn-helix BF39_275 PF00334 Nucleoside diphosphate kinase BF39_2750 PF00589 Phage integrase family BF39_2750 PF14659 Phage integrase, N-terminal SAM-like domain BF39_2751 PF05636 HIGH Nucleotidyl Transferase BF39_2752 PF13180 PDZ domain BF39_2752 PF05362 Lon protease (S16) C-terminal proteolytic domain BF39_2753 PF01734 Patatin-like phospholipase BF39_2754 PF01467 Cytidylyltransferase-like BF39_2755 PF07670 Nucleoside recognition BF39_2759 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BF39_276 PF01264 Chorismate synthase BF39_2760 PF06133 Control of competence regulator ComK, YlbF/YmcA BF39_2761 PF00300 Histidine phosphatase superfamily (branch 1) BF39_2762 PF14003 YlbE-like protein BF39_2763 PF14071 Putative coat protein BF39_2764 PF14504 CAP-associated N-terminal BF39_2764 PF00188 Cysteine-rich secretory protein family BF39_2765 PF08868 YugN-like family BF39_2766 PF00795 Carbon-nitrogen hydrolase BF39_2767 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BF39_2768 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BF39_2769 PF00510 Cytochrome c oxidase subunit III BF39_277 PF01761 3-dehydroquinate synthase BF39_2770 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF39_2771 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BF39_2771 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF39_2771 PF00034 Cytochrome c BF39_2772 PF01040 UbiA prenyltransferase family BF39_2773 PF02628 Cytochrome oxidase assembly protein BF39_2774 PF02436 Conserved carboxylase domain BF39_2774 PF02785 Biotin carboxylase C-terminal domain BF39_2774 PF00682 HMGL-like BF39_2774 PF00289 Biotin carboxylase, N-terminal domain BF39_2774 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF39_2774 PF00364 Biotin-requiring enzyme BF39_2775 PF01098 Cell cycle protein BF39_2776 PF07408 Protein of unknown function (DUF1507) BF39_2778 PF13638 PIN domain BF39_2778 PF02562 PhoH-like protein BF39_278 PF00155 Aminotransferase class I and II BF39_2780 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BF39_2782 PF14036 YlaH-like protein BF39_2785 PF00459 Inositol monophosphatase family BF39_2787 PF06335 Protein of unknown function (DUF1054) BF39_2788 PF05256 Uncharacterised protein family (UPF0223) BF39_2789 PF01276 Orn/Lys/Arg decarboxylase, major domain BF39_2789 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF39_2797 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_2797 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF39_2798 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF39_2798 PF00364 Biotin-requiring enzyme BF39_2798 PF02817 e3 binding domain BF39_2799 PF02779 Transketolase, pyrimidine binding domain BF39_2799 PF02780 Transketolase, C-terminal domain BF39_280 PF08864 UPF0302 domain BF39_280 PF08858 IDEAL domain BF39_2800 PF00676 Dehydrogenase E1 component BF39_2802 PF01327 Polypeptide deformylase BF39_2805 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF39_2805 PF17770 Ribonuclease J C-terminal domain BF39_2805 PF00753 Metallo-beta-lactamase superfamily BF39_2806 PF02080 TrkA-C domain BF39_2806 PF02254 TrkA-N domain BF39_2808 PF07687 Peptidase dimerisation domain BF39_2808 PF01546 Peptidase family M20/M25/M40 BF39_2809 PF00132 Bacterial transferase hexapeptide (six repeats) BF39_2809 PF14602 Hexapeptide repeat of succinyl-transferase BF39_2809 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BF39_281 PF10673 Protein of unknown function (DUF2487) BF39_2810 PF03466 LysR substrate binding domain BF39_2810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_2813 PF04308 Ribonuclease H-like BF39_2815 PF08796 Protein of unknown function (DUF1797) BF39_2818 PF00563 EAL domain BF39_2818 PF10388 EAL-domain associated signalling protein domain BF39_282 PF00355 Rieske [2Fe-2S] domain BF39_2820 PF00149 Calcineurin-like phosphoesterase BF39_2820 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF39_2822 PF02503 Polyphosphate kinase middle domain BF39_2822 PF13089 Polyphosphate kinase N-terminal domain BF39_2822 PF13090 Polyphosphate kinase C-terminal domain 2 BF39_2822 PF17941 Polyphosphate kinase C-terminal domain 1 BF39_2823 PF02541 Ppx/GppA phosphatase family BF39_2824 PF14177 YkyB-like protein BF39_2829 PF07690 Major Facilitator Superfamily BF39_283 PF00033 Cytochrome b/b6/petB BF39_2831 PF01717 Cobalamin-independent synthase, Catalytic domain BF39_2831 PF08267 Cobalamin-independent synthase, N-terminal domain BF39_2833 PF14040 Deoxyribonuclease NucA/NucB BF39_2835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_2835 PF00512 His Kinase A (phospho-acceptor) domain BF39_2837 PF00155 Aminotransferase class I and II BF39_2838 PF00356 Bacterial regulatory proteins, lacI family BF39_2838 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF39_2839 PF00528 Binding-protein-dependent transport system inner membrane component BF39_284 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF39_284 PF00032 Cytochrome b(C-terminal)/b6/petD BF39_2840 PF00528 Binding-protein-dependent transport system inner membrane component BF39_2841 PF13416 Bacterial extracellular solute-binding protein BF39_2842 PF00128 Alpha amylase, catalytic domain BF39_2842 PF02903 Alpha amylase, N-terminal ig-like domain BF39_2842 PF16657 Maltogenic Amylase, C-terminal domain BF39_2843 PF00128 Alpha amylase, catalytic domain BF39_2843 PF16657 Maltogenic Amylase, C-terminal domain BF39_2844 PF03459 TOBE domain BF39_2844 PF17912 MalK OB fold domain BF39_2844 PF00005 ABC transporter BF39_285 PF07187 Protein of unknown function (DUF1405) BF39_2852 PF00108 Thiolase, N-terminal domain BF39_2852 PF02803 Thiolase, C-terminal domain BF39_2853 PF00293 NUDIX domain BF39_2859 PF03551 Transcriptional regulator PadR-like family BF39_2863 PF01636 Phosphotransferase enzyme family BF39_2864 PF00795 Carbon-nitrogen hydrolase BF39_2865 PF00155 Aminotransferase class I and II BF39_2866 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BF39_2866 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BF39_2868 PF00596 Class II Aldolase and Adducin N-terminal domain BF39_2869 PF03079 ARD/ARD' family BF39_287 PF09577 Sporulation protein YpjB (SpoYpjB) BF39_2872 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF39_2872 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF39_2873 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF39_2873 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF39_2874 PF00990 Diguanylate cyclase, GGDEF domain BF39_2875 PF00881 Nitroreductase family BF39_2878 PF02896 PEP-utilising enzyme, TIM barrel domain BF39_2878 PF00391 PEP-utilising enzyme, mobile domain BF39_2878 PF05524 PEP-utilising enzyme, N-terminal BF39_2879 PF00381 PTS HPr component phosphorylation site BF39_288 PF04298 Putative neutral zinc metallopeptidase BF39_2880 PF02378 Phosphotransferase system, EIIC BF39_2880 PF00367 phosphotransferase system, EIIB BF39_2880 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF39_2881 PF03123 CAT RNA binding domain BF39_2881 PF00874 PRD domain BF39_2884 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF39_2885 PF01979 Amidohydrolase family BF39_2887 PF04079 Segregation and condensation complex subunit ScpB BF39_2888 PF02616 Segregation and condensation protein ScpA BF39_2890 PF03745 Domain of unknown function (DUF309) BF39_2891 PF00583 Acetyltransferase (GNAT) family BF39_2892 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF39_2893 PF06207 Protein of unknown function (DUF1002) BF39_2895 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_2896 PF14097 Stage V sporulation protein AE1 BF39_2897 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF39_2898 PF07451 Stage V sporulation protein AD (SpoVAD) BF39_2899 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF39_29 PF13649 Methyltransferase domain BF39_290 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_290 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_2900 PF13782 Stage V sporulation protein AB BF39_2901 PF12164 Stage V sporulation protein AA BF39_2903 PF00209 Sodium:neurotransmitter symporter family BF39_2904 PF04539 Sigma-70 region 3 BF39_2904 PF04542 Sigma-70 region 2 BF39_2904 PF04545 Sigma-70, region 4 BF39_2905 PF13581 Histidine kinase-like ATPase domain BF39_2906 PF01740 STAS domain BF39_2907 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_2907 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_2908 PF00392 Bacterial regulatory proteins, gntR family BF39_2909 PF00005 ABC transporter BF39_291 PF03819 MazG nucleotide pyrophosphohydrolase domain BF39_2912 PF01047 MarR family BF39_2914 PF00860 Permease family BF39_2915 PF01544 CorA-like Mg2+ transporter protein BF39_2916 PF02885 Glycosyl transferase family, helical bundle domain BF39_2916 PF00591 Glycosyl transferase family, a/b domain BF39_2916 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF39_2917 PF01048 Phosphorylase superfamily BF39_2918 PF01676 Metalloenzyme superfamily BF39_292 PF05173 Dihydrodipicolinate reductase, C-terminus BF39_292 PF01113 Dihydrodipicolinate reductase, N-terminus BF39_2920 PF00589 Phage integrase family BF39_2920 PF02899 Phage integrase, N-terminal SAM-like domain BF39_2921 PF14004 Protein of unknown function (DUF4227) BF39_2922 PF01475 Ferric uptake regulator family BF39_2923 PF01944 Stage II sporulation protein M BF39_2925 PF00293 NUDIX domain BF39_2926 PF13072 Mother cell inhibitor of FtsZ BF39_2927 PF00248 Aldo/keto reductase family BF39_2928 PF00248 Aldo/keto reductase family BF39_2929 PF13673 Acetyltransferase (GNAT) domain BF39_2929 PF04229 GrpB protein BF39_293 PF02142 MGS-like domain BF39_2931 PF00746 LPXTG cell wall anchor motif BF39_2931 PF02872 5'-nucleotidase, C-terminal domain BF39_2931 PF00149 Calcineurin-like phosphoesterase BF39_2931 PF00565 Staphylococcal nuclease homologue BF39_2933 PF12146 Serine aminopeptidase, S33 BF39_2934 PF03553 Na+/H+ antiporter family BF39_2934 PF13726 Na+-H+ antiporter family BF39_2935 PF00356 Bacterial regulatory proteins, lacI family BF39_2936 PF00583 Acetyltransferase (GNAT) family BF39_2937 PF12146 Serine aminopeptidase, S33 BF39_2938 PF10827 Protein of unknown function (DUF2552) BF39_294 PF02585 GlcNAc-PI de-N-acetylase BF39_2940 PF01872 RibD C-terminal domain BF39_2940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF39_2941 PF00677 Lumazine binding domain BF39_2942 PF00925 GTP cyclohydrolase II BF39_2942 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BF39_2944 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF39_2945 PF06968 Biotin and Thiamin Synthesis associated domain BF39_2945 PF04055 Radical SAM superfamily BF39_2946 PF13847 Methyltransferase domain BF39_2947 PF08241 Methyltransferase domain BF39_2947 PF12697 Alpha/beta hydrolase family BF39_2948 PF00155 Aminotransferase class I and II BF39_295 PF00534 Glycosyl transferases group 1 BF39_295 PF13439 Glycosyltransferase Family 4 BF39_2950 PF00202 Aminotransferase class-III BF39_2953 PF02872 5'-nucleotidase, C-terminal domain BF39_2953 PF00149 Calcineurin-like phosphoesterase BF39_2955 PF01037 Lrp/AsnC ligand binding domain BF39_2955 PF13404 AsnC-type helix-turn-helix domain BF39_2958 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF39_2958 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF39_2959 PF00202 Aminotransferase class-III BF39_296 PF13735 tRNA nucleotidyltransferase domain 2 putative BF39_296 PF12627 Probable RNA and SrmB- binding site of polymerase A BF39_296 PF01743 Poly A polymerase head domain BF39_2960 PF00696 Amino acid kinase family BF39_2961 PF01960 ArgJ family BF39_2962 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF39_2962 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF39_2964 PF00106 short chain dehydrogenase BF39_2965 PF00753 Metallo-beta-lactamase superfamily BF39_2967 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF39_2967 PF03807 NADP oxidoreductase coenzyme F420-dependent BF39_2968 PF03313 Serine dehydratase alpha chain BF39_2969 PF01842 ACT domain BF39_2969 PF03315 Serine dehydratase beta chain BF39_297 PF03099 Biotin/lipoate A/B protein ligase family BF39_297 PF02237 Biotin protein ligase C terminal domain BF39_297 PF08279 HTH domain BF39_2970 PF00753 Metallo-beta-lactamase superfamily BF39_2970 PF12706 Beta-lactamase superfamily domain BF39_2972 PF00817 impB/mucB/samB family BF39_2972 PF11798 IMS family HHH motif BF39_2972 PF11799 impB/mucB/samB family C-terminal domain BF39_2974 PF01546 Peptidase family M20/M25/M40 BF39_2974 PF07687 Peptidase dimerisation domain BF39_2975 PF13302 Acetyltransferase (GNAT) domain BF39_2977 PF03734 L,D-transpeptidase catalytic domain BF39_2978 PF06081 Aromatic acid exporter family member 1 BF39_2978 PF11728 Putative aromatic acid exporter C-terminal domain BF39_2979 PF00005 ABC transporter BF39_2980 PF00528 Binding-protein-dependent transport system inner membrane component BF39_2981 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF39_2982 PF06491 Disulphide isomerase BF39_2983 PF11208 Protein of unknown function (DUF2992) BF39_2984 PF00293 NUDIX domain BF39_2984 PF09297 NADH pyrophosphatase zinc ribbon domain BF39_2985 PF01098 Cell cycle protein BF39_2986 PF02817 e3 binding domain BF39_2986 PF00364 Biotin-requiring enzyme BF39_2986 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF39_2987 PF02780 Transketolase, C-terminal domain BF39_2987 PF02779 Transketolase, pyrimidine binding domain BF39_2988 PF00676 Dehydrogenase E1 component BF39_2989 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_2989 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF39_299 PF02548 Ketopantoate hydroxymethyltransferase BF39_2990 PF00871 Acetokinase family BF39_2991 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF39_2991 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF39_2992 PF01515 Phosphate acetyl/butaryl transferase BF39_2993 PF02954 Bacterial regulatory protein, Fis family BF39_2993 PF00989 PAS fold BF39_2993 PF00158 Sigma-54 interaction domain BF39_2995 PF03009 Glycerophosphoryl diester phosphodiesterase family BF39_2996 PF14174 YycC-like protein BF39_2998 PF08769 Sporulation initiation factor Spo0A C terminal BF39_2998 PF00072 Response regulator receiver domain BF39_2999 PF17820 PDZ domain BF39_2999 PF05580 SpoIVB peptidase S55 BF39_3 PF00290 Tryptophan synthase alpha chain BF39_300 PF02569 Pantoate-beta-alanine ligase BF39_3000 PF13476 AAA domain BF39_3001 PF02863 Arginine repressor, C-terminal domain BF39_3001 PF01316 Arginine repressor, DNA binding domain BF39_3002 PF01728 FtsJ-like methyltransferase BF39_3002 PF01479 S4 domain BF39_3003 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF39_3003 PF02780 Transketolase, C-terminal domain BF39_3003 PF02779 Transketolase, pyrimidine binding domain BF39_3004 PF00348 Polyprenyl synthetase BF39_3005 PF02609 Exonuclease VII small subunit BF39_3006 PF13742 OB-fold nucleic acid binding domain BF39_3006 PF02601 Exonuclease VII, large subunit BF39_3007 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF39_3007 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF39_3008 PF01029 NusB family BF39_3009 PF03780 Asp23 family, cell envelope-related function BF39_301 PF02261 Aspartate decarboxylase BF39_3010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF39_3010 PF00289 Biotin carboxylase, N-terminal domain BF39_3010 PF02785 Biotin carboxylase C-terminal domain BF39_3011 PF00364 Biotin-requiring enzyme BF39_3013 PF12685 SpoIIIAH-like protein BF39_3015 PF09581 Stage III sporulation protein AF (Spore_III_AF) BF39_3016 PF09546 Stage III sporulation protein AE (spore_III_AE) BF39_3017 PF06686 Stage III sporulation protein AC/AD protein family BF39_3018 PF06686 Stage III sporulation protein AC/AD protein family BF39_3019 PF09548 Stage III sporulation protein AB (spore_III_AB) BF39_302 PF00929 Exonuclease BF39_302 PF13307 Helicase C-terminal domain BF39_302 PF04851 Type III restriction enzyme, res subunit BF39_3024 PF09285 Elongation factor P, C-terminal BF39_3024 PF01132 Elongation factor P (EF-P) OB domain BF39_3024 PF08207 Elongation factor P (EF-P) KOW-like domain BF39_3025 PF00557 Metallopeptidase family M24 BF39_3025 PF01321 Creatinase/Prolidase N-terminal domain BF39_3026 PF01220 Dehydroquinase class II BF39_3027 PF11085 Conserved membrane protein YqhR BF39_3028 PF07136 Protein of unknown function (DUF1385) BF39_3029 PF13419 Haloacid dehalogenase-like hydrolase BF39_303 PF14084 Protein of unknown function (DUF4264) BF39_3031 PF02742 Iron dependent repressor, metal binding and dimerisation domain BF39_3031 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF39_3034 PF03099 Biotin/lipoate A/B protein ligase family BF39_3035 PF00581 Rhodanese-like domain BF39_3036 PF00356 Bacterial regulatory proteins, lacI family BF39_3036 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF39_3038 PF00893 Small Multidrug Resistance protein BF39_3039 PF00893 Small Multidrug Resistance protein BF39_3046 PF00005 ABC transporter BF39_3047 PF00392 Bacterial regulatory proteins, gntR family BF39_305 PF00155 Aminotransferase class I and II BF39_3050 PF02347 Glycine cleavage system P-protein BF39_3051 PF02347 Glycine cleavage system P-protein BF39_3052 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF39_3052 PF01571 Aminomethyltransferase folate-binding domain BF39_3053 PF00176 SNF2 family N-terminal domain BF39_3053 PF00271 Helicase conserved C-terminal domain BF39_3054 PF11079 Bacterial protein YqhG of unknown function BF39_3058 PF14038 YqzE-like protein BF39_3059 PF01202 Shikimate kinase BF39_306 PF07261 Replication initiation and membrane attachment BF39_3064 PF07963 Prokaryotic N-terminal methylation motif BF39_3066 PF00482 Type II secretion system (T2SS), protein F BF39_3067 PF00437 Type II/IV secretion system protein BF39_3069 PF11117 Protein of unknown function (DUF2626) BF39_307 PF00730 HhH-GPD superfamily base excision DNA repair protein BF39_307 PF10576 Iron-sulfur binding domain of endonuclease III BF39_307 PF00633 Helix-hairpin-helix motif BF39_3070 PF00375 Sodium:dicarboxylate symporter family BF39_3077 PF04101 Glycosyltransferase family 28 C-terminal domain BF39_3077 PF03033 Glycosyltransferase family 28 N-terminal domain BF39_3078 PF02574 Homocysteine S-methyltransferase BF39_3078 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF39_3078 PF02607 B12 binding domain BF39_3078 PF00809 Pterin binding enzyme BF39_3078 PF02310 B12 binding domain BF39_3079 PF02574 Homocysteine S-methyltransferase BF39_3079 PF02219 Methylenetetrahydrofolate reductase BF39_3080 PF01053 Cys/Met metabolism PLP-dependent enzyme BF39_3081 PF01053 Cys/Met metabolism PLP-dependent enzyme BF39_3083 PF01022 Bacterial regulatory protein, arsR family BF39_3085 PF00753 Metallo-beta-lactamase superfamily BF39_3086 PF10958 Protein of unknown function (DUF2759) BF39_3087 PF00480 ROK family BF39_3088 PF06014 Bacterial protein of unknown function (DUF910) BF39_3089 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF39_309 PF00905 Penicillin binding protein transpeptidase domain BF39_309 PF00912 Transglycosylase BF39_3090 PF00471 Ribosomal protein L33 BF39_3092 PF00483 Nucleotidyl transferase BF39_3093 PF01895 PhoU domain BF39_3094 PF00005 ABC transporter BF39_3095 PF00528 Binding-protein-dependent transport system inner membrane component BF39_3096 PF00528 Binding-protein-dependent transport system inner membrane component BF39_3097 PF12849 PBP superfamily domain BF39_3099 PF07690 Major Facilitator Superfamily BF39_31 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_31 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_310 PF03838 Recombination protein U BF39_3100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF39_3100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF39_3104 PF04551 GcpE protein BF39_3105 PF01475 Ferric uptake regulator family BF39_3106 PF00950 ABC 3 transport family BF39_3107 PF00005 ABC transporter BF39_3108 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_3108 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_3109 PF11116 Protein of unknown function (DUF2624) BF39_311 PF10720 Protein of unknown function (DUF2515) BF39_3110 PF01261 Xylose isomerase-like TIM barrel BF39_3111 PF00270 DEAD/DEAH box helicase BF39_3111 PF00271 Helicase conserved C-terminal domain BF39_3113 PF02401 LytB protein BF39_3114 PF01784 NIF3 (NGG1p interacting factor 3) BF39_3115 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BF39_3116 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF39_3117 PF00140 Sigma-70 factor, region 1.2 BF39_3117 PF04545 Sigma-70, region 4 BF39_3117 PF04539 Sigma-70 region 3 BF39_3117 PF04542 Sigma-70 region 2 BF39_3117 PF03979 Sigma-70 factor, region 1.1 BF39_3118 PF08275 DNA primase catalytic core, N-terminal domain BF39_3118 PF10410 DnaB-helicase binding domain of primase BF39_3118 PF01807 CHC2 zinc finger BF39_3119 PF03618 Kinase/pyrophosphorylase BF39_3120 PF08279 HTH domain BF39_3120 PF00571 CBS domain BF39_3121 PF11967 Recombination protein O N terminal BF39_3121 PF02565 Recombination protein O C terminal BF39_3123 PF07650 KH domain BF39_3123 PF01926 50S ribosome-binding GTPase BF39_3124 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF39_3125 PF01219 Prokaryotic diacylglycerol kinase BF39_3126 PF02130 Uncharacterized protein family UPF0054 BF39_3127 PF07698 7TM receptor with intracellular HD hydrolase BF39_3127 PF07697 7TM-HD extracellular BF39_3127 PF01966 HD domain BF39_3128 PF02562 PhoH-like protein BF39_3129 PF06898 Putative stage IV sporulation protein YqfD BF39_3130 PF07873 YabP family BF39_3131 PF09424 Yqey-like protein BF39_3132 PF01165 Ribosomal protein S21 BF39_3133 PF01938 TRAM domain BF39_3133 PF00919 Uncharacterized protein family UPF0004 BF39_3133 PF04055 Radical SAM superfamily BF39_3134 PF04452 RNA methyltransferase BF39_3136 PF00684 DnaJ central domain BF39_3136 PF00226 DnaJ domain BF39_3136 PF01556 DnaJ C terminal domain BF39_3137 PF00012 Hsp70 protein BF39_3138 PF01025 GrpE BF39_3139 PF01628 HrcA protein C terminal domain BF39_3140 PF04055 Radical SAM superfamily BF39_3140 PF06969 HemN C-terminal domain BF39_3141 PF01638 HxlR-like helix-turn-helix BF39_3142 PF06421 GTP-binding protein LepA C-terminus BF39_3142 PF00009 Elongation factor Tu GTP binding domain BF39_3142 PF00679 Elongation factor G C-terminus BF39_3142 PF03144 Elongation factor Tu domain 2 BF39_3144 PF03418 Germination protease BF39_3145 PF01649 Ribosomal protein S20 BF39_3146 PF06144 DNA polymerase III, delta subunit BF39_3147 PF14141 YqzM-like protein BF39_3148 PF03772 Competence protein BF39_3148 PF13567 Domain of unknown function (DUF4131) BF39_3148 PF00753 Metallo-beta-lactamase superfamily BF39_3149 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF39_3150 PF10531 SLBB domain BF39_3151 PF03807 NADP oxidoreductase coenzyme F420-dependent BF39_3151 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF39_3152 PF13649 Methyltransferase domain BF39_3154 PF01966 HD domain BF39_3155 PF01467 Cytidylyltransferase-like BF39_3156 PF01985 CRS1 / YhbY (CRM) domain BF39_3157 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BF39_3157 PF08501 Shikimate dehydrogenase substrate binding domain BF39_3157 PF01488 Shikimate / quinate 5-dehydrogenase BF39_3158 PF01926 50S ribosome-binding GTPase BF39_3161 PF02666 Phosphatidylserine decarboxylase BF39_3162 PF04545 Sigma-70, region 4 BF39_3162 PF04542 Sigma-70 region 2 BF39_3165 PF16244 Domain of unknown function (DUF4901) BF39_3166 PF00471 Ribosomal protein L33 BF39_3167 PF00881 Nitroreductase family BF39_3168 PF04607 Region found in RelA / SpoT proteins BF39_3170 PF00245 Alkaline phosphatase BF39_3172 PF08386 TAP-like protein BF39_3172 PF00561 alpha/beta hydrolase fold BF39_3179 PF00082 Subtilase family BF39_3179 PF02225 PA domain BF39_3179 PF05922 Peptidase inhibitor I9 BF39_3179 PF13860 FlgD Ig-like domain BF39_318 PF06908 YspA SLOG family BF39_3180 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BF39_3182 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_3183 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_3184 PF07681 DoxX BF39_319 PF05103 DivIVA protein BF39_3190 PF00005 ABC transporter BF39_3191 PF01032 FecCD transport family BF39_3192 PF01497 Periplasmic binding protein BF39_3193 PF14143 YrhC-like protein BF39_3194 PF00465 Iron-containing alcohol dehydrogenase BF39_3194 PF00171 Aldehyde dehydrogenase family BF39_3195 PF01053 Cys/Met metabolism PLP-dependent enzyme BF39_3196 PF00291 Pyridoxal-phosphate dependent enzyme BF39_3197 PF01048 Phosphorylase superfamily BF39_3198 PF08241 Methyltransferase domain BF39_320 PF01170 Putative RNA methylase family UPF0020 BF39_320 PF02926 THUMP domain BF39_3201 PF03717 Penicillin-binding Protein dimerisation domain BF39_3201 PF00905 Penicillin binding protein transpeptidase domain BF39_3202 PF03449 Transcription elongation factor, N-terminal BF39_3202 PF01272 Transcription elongation factor, GreA/GreB, C-term BF39_3203 PF00485 Phosphoribulokinase / Uridine kinase family BF39_3207 PF02618 YceG-like family BF39_3208 PF06949 Protein of unknown function (DUF1292) BF39_3209 PF03652 Holliday junction resolvase BF39_3210 PF06135 IreB regulatory phosphoprotein BF39_3211 PF02272 DHHA1 domain BF39_3211 PF01411 tRNA synthetases class II (A) BF39_3211 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF39_3213 PF01594 AI-2E family transporter BF39_3217 PF13538 UvrD-like helicase C-terminal domain BF39_3217 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BF39_3217 PF14490 Helix-hairpin-helix containing domain BF39_322 PF13307 Helicase C-terminal domain BF39_3220 PF00266 Aminotransferase class-V BF39_3221 PF02082 Transcriptional regulator BF39_3222 PF16193 AAA C-terminal domain BF39_3222 PF12002 MgsA AAA+ ATPase C terminal BF39_3222 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF39_3224 PF00899 ThiF family BF39_3225 PF00152 tRNA synthetases class II (D, K and N) BF39_3225 PF01336 OB-fold nucleic acid binding domain BF39_3225 PF02938 GAD domain BF39_3226 PF03129 Anticodon binding domain BF39_3226 PF13393 Histidyl-tRNA synthetase BF39_3228 PF02580 D-Tyr-tRNA(Tyr) deacylase BF39_3229 PF04607 Region found in RelA / SpoT proteins BF39_3229 PF02824 TGS domain BF39_3229 PF13291 ACT domain BF39_323 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BF39_3230 PF00156 Phosphoribosyl transferase domain BF39_3231 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BF39_3231 PF01368 DHH family BF39_3231 PF02272 DHHA1 domain BF39_3231 PF17768 RecJ OB domain BF39_3232 PF16916 Dimerisation domain of Zinc Transporter BF39_3232 PF01545 Cation efflux family BF39_3233 PF07549 SecD/SecF GG Motif BF39_3233 PF02355 Protein export membrane protein BF39_3234 PF13797 Post-transcriptional regulator BF39_3235 PF14667 Polysaccharide biosynthesis C-terminal domain BF39_3235 PF01943 Polysaccharide biosynthesis protein BF39_3236 PF04239 Protein of unknown function (DUF421) BF39_3238 PF02699 Preprotein translocase subunit BF39_3239 PF01702 Queuine tRNA-ribosyltransferase BF39_3240 PF02547 Queuosine biosynthesis protein BF39_3241 PF11146 Protein of unknown function (DUF2905) BF39_3242 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF39_3242 PF17864 RuvB AAA lid domain BF39_3242 PF05491 RuvB C-terminal winged helix domain BF39_3243 PF07499 RuvA, C-terminal domain BF39_3243 PF01330 RuvA N terminal domain BF39_3244 PF01497 Periplasmic binding protein BF39_3246 PF00892 EamA-like transporter family BF39_3247 PF00892 EamA-like transporter family BF39_3248 PF01022 Bacterial regulatory protein, arsR family BF39_325 PF01636 Phosphotransferase enzyme family BF39_3251 PF01476 LysM domain BF39_3252 PF02445 Quinolinate synthetase A protein BF39_3253 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF39_3253 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF39_3254 PF00890 FAD binding domain BF39_3254 PF02910 Fumarate reductase flavoprotein C-term BF39_3255 PF00266 Aminotransferase class-V BF39_3256 PF08279 HTH domain BF39_3256 PF02829 3H domain BF39_3257 PF03475 3-alpha domain BF39_3257 PF03473 MOSC domain BF39_3258 PF01842 ACT domain BF39_3258 PF00800 Prephenate dehydratase BF39_3259 PF02687 FtsX-like permease family BF39_326 PF00557 Metallopeptidase family M24 BF39_3260 PF02687 FtsX-like permease family BF39_3261 PF00005 ABC transporter BF39_3262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3264 PF00072 Response regulator receiver domain BF39_3264 PF00486 Transcriptional regulatory protein, C terminal BF39_3265 PF01018 GTP1/OBG BF39_3265 PF01926 50S ribosome-binding GTPase BF39_3265 PF09269 Domain of unknown function (DUF1967) BF39_3266 PF14682 Sporulation initiation phospho-transferase B, C-terminal BF39_3266 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF39_3267 PF01016 Ribosomal L27 protein BF39_3268 PF04327 Cysteine protease Prp BF39_3269 PF00829 Ribosomal prokaryotic L21 protein BF39_327 PF00156 Phosphoribosyl transferase domain BF39_3270 PF10150 Ribonuclease E/G family BF39_3270 PF00575 S1 RNA binding domain BF39_3271 PF02163 Peptidase family M50 BF39_3272 PF01551 Peptidase family M23 BF39_3273 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF39_3274 PF03775 Septum formation inhibitor MinC, C-terminal domain BF39_3276 PF04085 rod shape-determining protein MreC BF39_3278 PF04002 RadC-like JAB domain BF39_3279 PF02545 Maf-like protein BF39_328 PF00860 Permease family BF39_3281 PF02875 Mur ligase family, glutamate ligase domain BF39_3281 PF08245 Mur ligase middle domain BF39_3282 PF08264 Anticodon-binding domain of tRNA BF39_3282 PF10458 Valyl tRNA synthetase tRNA binding arm BF39_3282 PF00133 tRNA synthetases class I (I, L, M and V) BF39_3284 PF01476 LysM domain BF39_3285 PF00202 Aminotransferase class-III BF39_3286 PF00490 Delta-aminolevulinic acid dehydratase BF39_3287 PF02602 Uroporphyrinogen-III synthase HemD BF39_3288 PF03900 Porphobilinogen deaminase, C-terminal domain BF39_3288 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BF39_3289 PF01578 Cytochrome C assembly protein BF39_329 PF04235 Protein of unknown function (DUF418) BF39_3290 PF01488 Shikimate / quinate 5-dehydrogenase BF39_3290 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BF39_3290 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BF39_3291 PF01047 MarR family BF39_3292 PF02566 OsmC-like protein BF39_3293 PF01926 50S ribosome-binding GTPase BF39_3294 PF05362 Lon protease (S16) C-terminal proteolytic domain BF39_3294 PF02190 ATP-dependent protease La (LON) substrate-binding domain BF39_3294 PF00004 ATPase family associated with various cellular activities (AAA) BF39_3295 PF05362 Lon protease (S16) C-terminal proteolytic domain BF39_3295 PF00004 ATPase family associated with various cellular activities (AAA) BF39_3296 PF06689 ClpX C4-type zinc finger BF39_3296 PF10431 C-terminal, D2-small domain, of ClpB protein BF39_3296 PF07724 AAA domain (Cdc48 subfamily) BF39_3297 PF05697 Bacterial trigger factor protein (TF) BF39_3297 PF05698 Bacterial trigger factor protein (TF) C-terminus BF39_3297 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF39_33 PF12389 Camelysin metallo-endopeptidase BF39_3301 PF08000 Bacterial PH domain BF39_3301 PF11724 YvbH-like oligomerisation region BF39_3305 PF12850 Calcineurin-like phosphoesterase superfamily domain BF39_3306 PF01725 Ham1 family BF39_3307 PF01138 3' exoribonuclease family, domain 1 BF39_3307 PF03725 3' exoribonuclease family, domain 2 BF39_3308 PF10646 Sporulation and spore germination BF39_3309 PF01177 Asp/Glu/Hydantoin racemase BF39_331 PF00350 Dynamin family BF39_3310 PF07690 Major Facilitator Superfamily BF39_3312 PF00440 Bacterial regulatory proteins, tetR family BF39_3315 PF00196 Bacterial regulatory proteins, luxR family BF39_3316 PF00860 Permease family BF39_3318 PF07969 Amidohydrolase family BF39_3319 PF07969 Amidohydrolase family BF39_3320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_3322 PF00528 Binding-protein-dependent transport system inner membrane component BF39_3323 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_3323 PF00005 ABC transporter BF39_3324 PF00005 ABC transporter BF39_3324 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_3325 PF07694 5TMR of 5TMR-LYT BF39_3325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3325 PF06580 Histidine kinase BF39_3326 PF04397 LytTr DNA-binding domain BF39_3326 PF00072 Response regulator receiver domain BF39_3329 PF04024 PspC domain BF39_333 PF00583 Acetyltransferase (GNAT) family BF39_3330 PF07883 Cupin domain BF39_3330 PF01381 Helix-turn-helix BF39_3331 PF13536 Putative multidrug resistance efflux transporter BF39_3332 PF00230 Major intrinsic protein BF39_3333 PF02082 Transcriptional regulator BF39_3335 PF00005 ABC transporter BF39_3335 PF13732 Domain of unknown function (DUF4162) BF39_3336 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BF39_3337 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF39_3337 PF00691 OmpA family BF39_3338 PF00691 OmpA family BF39_3338 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF39_3339 PF01618 MotA/TolQ/ExbB proton channel family BF39_334 PF10752 Protein of unknown function (DUF2533) BF39_3340 PF02557 D-alanyl-D-alanine carboxypeptidase BF39_3341 PF03061 Thioesterase superfamily BF39_3342 PF13183 4Fe-4S dicluster domain BF39_3342 PF13085 2Fe-2S iron-sulfur cluster binding domain BF39_3343 PF00890 FAD binding domain BF39_3343 PF02910 Fumarate reductase flavoprotein C-term BF39_3344 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BF39_3345 PF10702 Protein of unknown function (DUF2507) BF39_3346 PF02151 UvrB/uvrC motif BF39_3346 PF01541 GIY-YIG catalytic domain BF39_3346 PF08459 UvrC Helix-hairpin-helix N-terminal BF39_3347 PF00085 Thioredoxin BF39_3348 PF00766 Electron transfer flavoprotein FAD-binding domain BF39_3348 PF01012 Electron transfer flavoprotein domain BF39_3349 PF01012 Electron transfer flavoprotein domain BF39_335 PF00581 Rhodanese-like domain BF39_3350 PF00378 Enoyl-CoA hydratase/isomerase BF39_3351 PF00440 Bacterial regulatory proteins, tetR family BF39_3351 PF08359 YsiA-like protein, C-terminal region BF39_3352 PF13193 AMP-binding enzyme C-terminal domain BF39_3352 PF00501 AMP-binding enzyme BF39_3354 PF01497 Periplasmic binding protein BF39_3355 PF01032 FecCD transport family BF39_3356 PF05163 DinB family BF39_3362 PF00005 ABC transporter BF39_3363 PF00512 His Kinase A (phospho-acceptor) domain BF39_3363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3364 PF00072 Response regulator receiver domain BF39_3364 PF00486 Transcriptional regulatory protein, C terminal BF39_3366 PF09962 Uncharacterized conserved protein (DUF2196) BF39_3367 PF17785 PUA-like domain BF39_3367 PF10672 S-adenosylmethionine-dependent methyltransferase BF39_3369 PF03992 Antibiotic biosynthesis monooxygenase BF39_3370 PF04203 Sortase domain BF39_3371 PF00005 ABC transporter BF39_3372 PF01032 FecCD transport family BF39_3373 PF01497 Periplasmic binding protein BF39_3374 PF05031 Iron Transport-associated domain BF39_3376 PF05031 Iron Transport-associated domain BF39_3377 PF05525 Branched-chain amino acid transport protein BF39_3378 PF00849 RNA pseudouridylate synthase BF39_3378 PF01479 S4 domain BF39_338 PF03738 Glutathionylspermidine synthase preATP-grasp BF39_3380 PF00488 MutS domain V BF39_3380 PF01713 Smr domain BF39_3381 PF14791 DNA polymerase beta thumb BF39_3381 PF14716 Helix-hairpin-helix domain BF39_3381 PF02811 PHP domain BF39_3382 PF02674 Colicin V production protein BF39_3383 PF05164 Cell division protein ZapA BF39_3384 PF01351 Ribonuclease HII BF39_3384 PF11858 Domain of unknown function (DUF3378) BF39_3388 PF00152 tRNA synthetases class II (D, K and N) BF39_3388 PF01336 OB-fold nucleic acid binding domain BF39_3389 PF03483 B3/4 domain BF39_3389 PF03484 tRNA synthetase B5 domain BF39_3389 PF03147 Ferredoxin-fold anticodon binding domain BF39_3389 PF01588 Putative tRNA binding domain BF39_3389 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BF39_3390 PF01409 tRNA synthetases class II core domain (F) BF39_3390 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF39_3391 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF39_3391 PF00588 SpoU rRNA Methylase family BF39_3392 PF14098 Small, acid-soluble spore protein I BF39_3393 PF01966 HD domain BF39_3398 PF07690 Major Facilitator Superfamily BF39_340 PF00690 Cation transporter/ATPase, N-terminus BF39_340 PF00689 Cation transporting ATPase, C-terminus BF39_3400 PF00440 Bacterial regulatory proteins, tetR family BF39_3400 PF16859 Tetracyclin repressor-like, C-terminal domain BF39_3401 PF05343 M42 glutamyl aminopeptidase BF39_3403 PF00453 Ribosomal protein L20 BF39_3404 PF01632 Ribosomal protein L35 BF39_3405 PF05198 Translation initiation factor IF-3, N-terminal domain BF39_3405 PF00707 Translation initiation factor IF-3, C-terminal domain BF39_3406 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF39_3406 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF39_3406 PF02824 TGS domain BF39_3406 PF03129 Anticodon binding domain BF39_3407 PF08812 YtxC-like family BF39_3408 PF01695 IstB-like ATP binding protein BF39_3408 PF07319 Primosomal protein DnaI N-terminus BF39_3409 PF07261 Replication initiation and membrane attachment BF39_341 PF01367 5'-3' exonuclease, C-terminal SAM fold BF39_341 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF39_3410 PF03477 ATP cone domain BF39_3411 PF02675 S-adenosylmethionine decarboxylase BF39_3412 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF39_3412 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF39_3413 PF01121 Dephospho-CoA kinase BF39_3414 PF02659 Putative manganese efflux pump BF39_3415 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BF39_3415 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BF39_3415 PF06827 Zinc finger found in FPG and IleRS BF39_3416 PF01367 5'-3' exonuclease, C-terminal SAM fold BF39_3416 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF39_3416 PF00476 DNA polymerase family A BF39_3417 PF16736 Single Cache-like BF39_3417 PF00512 His Kinase A (phospho-acceptor) domain BF39_3417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3417 PF00989 PAS fold BF39_3418 PF00072 Response regulator receiver domain BF39_3418 PF00486 Transcriptional regulatory protein, C terminal BF39_3421 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF39_3421 PF00056 lactate/malate dehydrogenase, NAD binding domain BF39_3422 PF00180 Isocitrate/isopropylmalate dehydrogenase BF39_3423 PF00285 Citrate synthase, C-terminal domain BF39_3424 PF04284 Protein of unknown function (DUF441) BF39_3425 PF01594 AI-2E family transporter BF39_3426 PF04186 FxsA cytoplasmic membrane protein BF39_3427 PF00224 Pyruvate kinase, barrel domain BF39_3427 PF02887 Pyruvate kinase, alpha/beta domain BF39_3427 PF00391 PEP-utilising enzyme, mobile domain BF39_3428 PF00365 Phosphofructokinase BF39_3429 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF39_3430 PF01039 Carboxyl transferase domain BF39_3430 PF17848 Acetyl-coA carboxylase zinc finger domain BF39_3431 PF00392 Bacterial regulatory proteins, gntR family BF39_3432 PF03949 Malic enzyme, NAD binding domain BF39_3432 PF00390 Malic enzyme, N-terminal domain BF39_3433 PF02811 PHP domain BF39_3433 PF01336 OB-fold nucleic acid binding domain BF39_3433 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF39_3433 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF39_3433 PF14579 Helix-hairpin-helix motif BF39_3434 PF14034 Sporulation protein YtrH BF39_3436 PF02272 DHHA1 domain BF39_3436 PF01368 DHH family BF39_3437 PF14007 YtpI-like protein BF39_3440 PF03061 Thioesterase superfamily BF39_3440 PF00392 Bacterial regulatory proteins, gntR family BF39_3440 PF07085 DRTGG domain BF39_3440 PF00571 CBS domain BF39_3443 PF00557 Metallopeptidase family M24 BF39_3443 PF01321 Creatinase/Prolidase N-terminal domain BF39_3444 PF11518 Protein of unknown function (DUF3221) BF39_3450 PF12746 GNAT acetyltransferase BF39_3451 PF07883 Cupin domain BF39_3453 PF01381 Helix-turn-helix BF39_3455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF39_3455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF39_3457 PF00582 Universal stress protein family BF39_3461 PF14698 Argininosuccinate lyase C-terminal BF39_3461 PF00206 Lyase BF39_3462 PF00764 Arginosuccinate synthase BF39_3466 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_3466 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_3467 PF12787 EcsC protein family BF39_3470 PF00871 Acetokinase family BF39_3471 PF02384 N-6 DNA Methylase BF39_3472 PF08534 Redoxin BF39_3473 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF39_3475 PF01513 ATP-NAD kinase BF39_3476 PF07969 Amidohydrolase family BF39_3478 PF13193 AMP-binding enzyme C-terminal domain BF39_3478 PF00501 AMP-binding enzyme BF39_3479 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF39_348 PF02397 Bacterial sugar transferase BF39_3480 PF02568 Thiamine biosynthesis protein (ThiI) BF39_3480 PF02926 THUMP domain BF39_3481 PF00266 Aminotransferase class-V BF39_3482 PF06160 Septation ring formation regulator, EzrA BF39_3483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_3483 PF03466 LysR substrate binding domain BF39_3484 PF00892 EamA-like transporter family BF39_3485 PF00440 Bacterial regulatory proteins, tetR family BF39_3486 PF00440 Bacterial regulatory proteins, tetR family BF39_3487 PF13185 GAF domain BF39_3488 PF01053 Cys/Met metabolism PLP-dependent enzyme BF39_3489 PF01479 S4 domain BF39_3489 PF00163 Ribosomal protein S4/S9 N-terminal domain BF39_3492 PF01479 S4 domain BF39_3492 PF00579 tRNA synthetases class I (W and Y) BF39_3494 PF08281 Sigma-70, region 4 BF39_3494 PF04542 Sigma-70 region 2 BF39_3496 PF13193 AMP-binding enzyme C-terminal domain BF39_3496 PF00501 AMP-binding enzyme BF39_3497 PF00583 Acetyltransferase (GNAT) family BF39_3498 PF00571 CBS domain BF39_3499 PF00850 Histone deacetylase domain BF39_35 PF12389 Camelysin metallo-endopeptidase BF39_3501 PF00072 Response regulator receiver domain BF39_3501 PF00486 Transcriptional regulatory protein, C terminal BF39_3502 PF00672 HAMP domain BF39_3502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3502 PF00512 His Kinase A (phospho-acceptor) domain BF39_3502 PF13426 PAS domain BF39_3503 PF12796 Ankyrin repeats (3 copies) BF39_3504 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF39_3505 PF01741 Large-conductance mechanosensitive channel, MscL BF39_351 PF00535 Glycosyl transferase family 2 BF39_3510 PF00356 Bacterial regulatory proteins, lacI family BF39_3511 PF07537 CamS sex pheromone cAM373 precursor BF39_3512 PF11009 Protein of unknown function (DUF2847) BF39_3514 PF02073 Thermophilic metalloprotease (M29) BF39_3518 PF13302 Acetyltransferase (GNAT) domain BF39_3519 PF08245 Mur ligase middle domain BF39_3519 PF02875 Mur ligase family, glutamate ligase domain BF39_3519 PF01225 Mur ligase family, catalytic domain BF39_352 PF00534 Glycosyl transferases group 1 BF39_352 PF13439 Glycosyltransferase Family 4 BF39_3521 PF17854 FtsK alpha domain BF39_3521 PF09397 Ftsk gamma domain BF39_3521 PF01580 FtsK/SpoIIIE family BF39_3524 PF01588 Putative tRNA binding domain BF39_3524 PF14794 Domain of unknown function (DUF4479) BF39_3525 PF07285 Protein of unknown function (DUF1444) BF39_3526 PF00085 Thioredoxin BF39_3527 PF01931 Protein of unknown function DUF84 BF39_3528 PF05343 M42 glutamyl aminopeptidase BF39_3530 PF00753 Metallo-beta-lactamase superfamily BF39_3531 PF02390 Putative methyltransferase BF39_3532 PF14165 YtzH-like protein BF39_3533 PF01636 Phosphotransferase enzyme family BF39_3534 PF00128 Alpha amylase, catalytic domain BF39_3534 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF39_3534 PF17999 Pullulanase N1-terminal domain BF39_3535 PF02834 LigT like Phosphoesterase BF39_3536 PF01546 Peptidase family M20/M25/M40 BF39_3537 PF01546 Peptidase family M20/M25/M40 BF39_3538 PF08220 DeoR-like helix-turn-helix domain BF39_3539 PF00849 RNA pseudouridylate synthase BF39_3539 PF01479 S4 domain BF39_3540 PF01943 Polysaccharide biosynthesis protein BF39_3540 PF14667 Polysaccharide biosynthesis C-terminal domain BF39_3542 PF07690 Major Facilitator Superfamily BF39_3543 PF01022 Bacterial regulatory protein, arsR family BF39_3544 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF39_3546 PF10957 Sporulation protein Cse60 BF39_3548 PF02559 CarD-like/TRCF domain BF39_355 PF13673 Acetyltransferase (GNAT) domain BF39_355 PF18014 Acetyltransferase (GNAT) domain BF39_3550 PF06800 Sugar transport protein BF39_3553 PF02391 MoaE protein BF39_3554 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BF39_3555 PF00994 Probable molybdopterin binding domain BF39_3555 PF03453 MoeA N-terminal region (domain I and II) BF39_3555 PF03454 MoeA C-terminal region (domain IV) BF39_3556 PF01967 MoaC family BF39_3557 PF00899 ThiF family BF39_3558 PF04055 Radical SAM superfamily BF39_3558 PF06463 Molybdenum Cofactor Synthesis C BF39_3562 PF00581 Rhodanese-like domain BF39_3564 PF00561 alpha/beta hydrolase fold BF39_3565 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_3566 PF03845 Spore germination protein BF39_3571 PF13603 Leucyl-tRNA synthetase, Domain 2 BF39_3571 PF09334 tRNA synthetases class I (M) BF39_3571 PF08264 Anticodon-binding domain of tRNA BF39_3571 PF00133 tRNA synthetases class I (I, L, M and V) BF39_3572 PF07690 Major Facilitator Superfamily BF39_3573 PF00999 Sodium/hydrogen exchanger family BF39_3574 PF02080 TrkA-C domain BF39_3575 PF00589 Phage integrase family BF39_3577 PF00005 ABC transporter BF39_3578 PF07786 Protein of unknown function (DUF1624) BF39_3578 PF04235 Protein of unknown function (DUF418) BF39_3580 PF10732 Protein of unknown function (DUF2524) BF39_3581 PF16199 Radical_SAM C-terminal domain BF39_3581 PF04055 Radical SAM superfamily BF39_3582 PF06962 Putative rRNA methylase BF39_3583 PF00005 ABC transporter BF39_3583 PF13732 Domain of unknown function (DUF4162) BF39_3585 PF01177 Asp/Glu/Hydantoin racemase BF39_3588 PF10776 Protein of unknown function (DUF2600) BF39_3589 PF12146 Serine aminopeptidase, S33 BF39_359 PF13456 Reverse transcriptase-like BF39_3590 PF00132 Bacterial transferase hexapeptide (six repeats) BF39_3591 PF01569 PAP2 superfamily BF39_3592 PF13439 Glycosyltransferase Family 4 BF39_3592 PF00534 Glycosyl transferases group 1 BF39_3593 PF12804 MobA-like NTP transferase domain BF39_3594 PF00994 Probable molybdopterin binding domain BF39_3597 PF02772 S-adenosylmethionine synthetase, central domain BF39_3597 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF39_3597 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF39_3598 PF01293 Phosphoenolpyruvate carboxykinase BF39_36 PF01381 Helix-turn-helix BF39_36 PF08671 Anti-repressor SinI BF39_360 PF01263 Aldose 1-epimerase BF39_3604 PF01784 NIF3 (NGG1p interacting factor 3) BF39_3605 PF13188 PAS domain BF39_3605 PF00989 PAS fold BF39_3605 PF00512 His Kinase A (phospho-acceptor) domain BF39_3605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3605 PF13426 PAS domain BF39_3606 PF08447 PAS fold BF39_3606 PF00512 His Kinase A (phospho-acceptor) domain BF39_3606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3606 PF00989 PAS fold BF39_3607 PF08386 TAP-like protein BF39_3607 PF00561 alpha/beta hydrolase fold BF39_3608 PF00884 Sulfatase BF39_3613 PF00005 ABC transporter BF39_3614 PF00528 Binding-protein-dependent transport system inner membrane component BF39_3620 PF00293 NUDIX domain BF39_3624 PF02664 S-Ribosylhomocysteinase (LuxS) BF39_3625 PF00484 Carbonic anhydrase BF39_3626 PF01809 Putative membrane protein insertion efficiency factor BF39_3627 PF01654 Cytochrome bd terminal oxidase subunit I BF39_3628 PF02322 Cytochrome bd terminal oxidase subunit II BF39_3629 PF10676 Spore germination protein gerPA/gerPF BF39_3632 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_3632 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_3637 PF04012 PspA/IM30 family BF39_3641 PF07664 Ferrous iron transport protein B C terminus BF39_3641 PF07670 Nucleoside recognition BF39_3641 PF17910 FeoB cytosolic helical domain BF39_3641 PF02421 Ferrous iron transport protein B BF39_3643 PF09515 Thiamine transporter protein (Thia_YuaJ) BF39_3644 PF00512 His Kinase A (phospho-acceptor) domain BF39_3644 PF00672 HAMP domain BF39_3644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3645 PF00072 Response regulator receiver domain BF39_3645 PF00486 Transcriptional regulatory protein, C terminal BF39_365 PF00313 'Cold-shock' DNA-binding domain BF39_3650 PF00156 Phosphoribosyl transferase domain BF39_3651 PF00781 Diacylglycerol kinase catalytic domain BF39_3655 PF00248 Aldo/keto reductase family BF39_3658 PF09335 SNARE associated Golgi protein BF39_3659 PF00398 Ribosomal RNA adenine dimethylase BF39_3660 PF02687 FtsX-like permease family BF39_3661 PF00005 ABC transporter BF39_3662 PF06445 GyrI-like small molecule binding domain BF39_3662 PF12833 Helix-turn-helix domain BF39_3663 PF00486 Transcriptional regulatory protein, C terminal BF39_3663 PF00072 Response regulator receiver domain BF39_3664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3665 PF02687 FtsX-like permease family BF39_3666 PF02687 FtsX-like permease family BF39_3667 PF02687 FtsX-like permease family BF39_3668 PF00005 ABC transporter BF39_3669 PF02687 FtsX-like permease family BF39_367 PF01810 LysE type translocator BF39_3670 PF02687 FtsX-like permease family BF39_3672 PF02447 GntP family permease BF39_3675 PF07071 KDGP aldolase BF39_3676 PF03841 L-seryl-tRNA selenium transferase BF39_3677 PF01979 Amidohydrolase family BF39_3680 PF02557 D-alanyl-D-alanine carboxypeptidase BF39_3681 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3681 PF00512 His Kinase A (phospho-acceptor) domain BF39_3682 PF00072 Response regulator receiver domain BF39_3682 PF00486 Transcriptional regulatory protein, C terminal BF39_3683 PF13378 Enolase C-terminal domain-like BF39_3683 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF39_3684 PF13193 AMP-binding enzyme C-terminal domain BF39_3684 PF00501 AMP-binding enzyme BF39_3685 PF00378 Enoyl-CoA hydratase/isomerase BF39_3686 PF00561 alpha/beta hydrolase fold BF39_3687 PF16582 Middle domain of thiamine pyrophosphate BF39_3687 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF39_3687 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF39_3688 PF00425 chorismate binding enzyme BF39_3689 PF01040 UbiA prenyltransferase family BF39_3690 PF01258 Prokaryotic dksA/traR C4-type zinc finger BF39_3691 PF00313 'Cold-shock' DNA-binding domain BF39_3695 PF00343 Carbohydrate phosphorylase BF39_3696 PF00534 Glycosyl transferases group 1 BF39_3696 PF08323 Starch synthase catalytic domain BF39_3697 PF00483 Nucleotidyl transferase BF39_3698 PF00483 Nucleotidyl transferase BF39_37 PF05547 Immune inhibitor A peptidase M6 BF39_370 PF04341 Protein of unknown function, DUF485 BF39_3701 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF39_3701 PF00056 lactate/malate dehydrogenase, NAD binding domain BF39_371 PF00474 Sodium:solute symporter family BF39_372 PF00202 Aminotransferase class-III BF39_3720 PF05698 Bacterial trigger factor protein (TF) C-terminus BF39_3720 PF05697 Bacterial trigger factor protein (TF) BF39_3728 PF02308 MgtC family BF39_3729 PF08868 YugN-like family BF39_3730 PF02254 TrkA-N domain BF39_3730 PF07885 Ion channel BF39_3731 PF00342 Phosphoglucose isomerase BF39_3732 PF04070 Domain of unknown function (DUF378) BF39_3733 PF00575 S1 RNA binding domain BF39_3734 PF00155 Aminotransferase class I and II BF39_3735 PF01037 Lrp/AsnC ligand binding domain BF39_3736 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF39_3736 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF39_3737 PF08386 TAP-like protein BF39_3737 PF00561 alpha/beta hydrolase fold BF39_3739 PF00155 Aminotransferase class I and II BF39_374 PF00999 Sodium/hydrogen exchanger family BF39_3742 PF08810 Kinase associated protein B BF39_3743 PF00929 Exonuclease BF39_3744 PF03600 Citrate transporter BF39_3747 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF39_3747 PF03129 Anticodon binding domain BF39_3748 PF03061 Thioesterase superfamily BF39_375 PF00753 Metallo-beta-lactamase superfamily BF39_375 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF39_375 PF17770 Ribonuclease J C-terminal domain BF39_3750 PF02632 BioY family BF39_3752 PF00483 Nucleotidyl transferase BF39_3753 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF39_3753 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF39_3753 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF39_3753 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF39_3754 PF10372 Bacterial membrane-spanning protein N-terminus BF39_3754 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF39_3755 PF00883 Cytosol aminopeptidase family, catalytic domain BF39_3755 PF02789 Cytosol aminopeptidase family, N-terminal domain BF39_3756 PF06725 3D domain BF39_3758 PF13344 Haloacid dehalogenase-like hydrolase BF39_3758 PF00293 NUDIX domain BF39_3759 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_376 PF13411 MerR HTH family regulatory protein BF39_376 PF06445 GyrI-like small molecule binding domain BF39_3760 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_3762 PF06445 GyrI-like small molecule binding domain BF39_3765 PF04463 Protein of unknown function (DUF523) BF39_3768 PF01521 Iron-sulphur cluster biosynthesis BF39_3769 PF01678 Diaminopimelate epimerase BF39_3770 PF07293 Protein of unknown function (DUF1450) BF39_3771 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_3772 PF09383 NIL domain BF39_3772 PF00005 ABC transporter BF39_3773 PF03649 Uncharacterised protein family (UPF0014) BF39_3774 PF03831 PhnA domain BF39_3774 PF08274 PhnA Zinc-Ribbon BF39_378 PF04239 Protein of unknown function (DUF421) BF39_3782 PF07315 Protein of unknown function (DUF1462) BF39_3783 PF01106 NifU-like domain BF39_3786 PF04608 Phosphatidylglycerophosphatase A BF39_3788 PF02525 Flavodoxin-like fold BF39_3789 PF13344 Haloacid dehalogenase-like hydrolase BF39_379 PF02698 DUF218 domain BF39_3791 PF01934 Protein of unknown function DUF86 BF39_3792 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF39_3795 PF06265 Protein of unknown function (DUF1027) BF39_3796 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF39_3797 PF07739 TipAS antibiotic-recognition domain BF39_3797 PF13411 MerR HTH family regulatory protein BF39_3798 PF10086 YhfC intramembrane metalloprotease BF39_38 PF00171 Aldehyde dehydrogenase family BF39_3802 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BF39_3802 PF04055 Radical SAM superfamily BF39_3803 PF01551 Peptidase family M23 BF39_3805 PF08827 Domain of unknown function (DUF1805) BF39_3806 PF02872 5'-nucleotidase, C-terminal domain BF39_3807 PF03551 Transcriptional regulator PadR-like family BF39_3808 PF04892 VanZ like family BF39_3809 PF01458 Uncharacterized protein family (UPF0051) BF39_381 PF00881 Nitroreductase family BF39_3810 PF01592 NifU-like N terminal domain BF39_3811 PF00266 Aminotransferase class-V BF39_3812 PF01458 Uncharacterized protein family (UPF0051) BF39_3813 PF00005 ABC transporter BF39_3814 PF03180 NLPA lipoprotein BF39_3815 PF03180 NLPA lipoprotein BF39_3816 PF00528 Binding-protein-dependent transport system inner membrane component BF39_3817 PF09383 NIL domain BF39_3817 PF00005 ABC transporter BF39_3819 PF00085 Thioredoxin BF39_3820 PF01751 Toprim domain BF39_3821 PF01597 Glycine cleavage H-protein BF39_3822 PF03960 ArsC family BF39_3831 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF39_3831 PF00056 lactate/malate dehydrogenase, NAD binding domain BF39_3836 PF00440 Bacterial regulatory proteins, tetR family BF39_3836 PF13305 Tetracyclin repressor-like, C-terminal domain BF39_3837 PF00753 Metallo-beta-lactamase superfamily BF39_3838 PF02770 Acyl-CoA dehydrogenase, middle domain BF39_3838 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF39_3838 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF39_3839 PF00108 Thiolase, N-terminal domain BF39_3839 PF02803 Thiolase, C-terminal domain BF39_3840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF39_3840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF39_3840 PF00378 Enoyl-CoA hydratase/isomerase BF39_3841 PF14115 YuzL-like protein BF39_3842 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_3842 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_3843 PF01619 Proline dehydrogenase BF39_3844 PF10835 Protein of unknown function (DUF2573) BF39_3845 PF01910 Thiamine-binding protein BF39_3846 PF02743 Cache domain BF39_3846 PF00672 HAMP domain BF39_3846 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_3850 PF07690 Major Facilitator Superfamily BF39_3851 PF13520 Amino acid permease BF39_3853 PF02096 60Kd inner membrane protein BF39_3855 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_3855 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_3862 PF09335 SNARE associated Golgi protein BF39_3864 PF17969 L,D-transpeptidase C-terminal domain BF39_3864 PF03734 L,D-transpeptidase catalytic domain BF39_3865 PF00072 Response regulator receiver domain BF39_3865 PF00486 Transcriptional regulatory protein, C terminal BF39_3866 PF16736 Single Cache-like BF39_3866 PF00512 His Kinase A (phospho-acceptor) domain BF39_3866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3866 PF00989 PAS fold BF39_3868 PF09334 tRNA synthetases class I (M) BF39_3868 PF08264 Anticodon-binding domain of tRNA BF39_3870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_3870 PF00672 HAMP domain BF39_3870 PF02743 Cache domain BF39_3871 PF01883 Iron-sulfur cluster assembly protein BF39_3872 PF07504 Fungalysin/Thermolysin Propeptide Motif BF39_3872 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF39_3872 PF01447 Thermolysin metallopeptidase, catalytic domain BF39_3872 PF03413 Peptidase propeptide and YPEB domain BF39_3873 PF02678 Pirin BF39_3873 PF17954 Quercetinase C-terminal cupin domain BF39_3874 PF01047 MarR family BF39_3876 PF00999 Sodium/hydrogen exchanger family BF39_3877 PF02080 TrkA-C domain BF39_3878 PF01235 Sodium:alanine symporter family BF39_3879 PF00210 Ferritin-like domain BF39_3882 PF03641 Possible lysine decarboxylase BF39_3884 PF00210 Ferritin-like domain BF39_3885 PF04235 Protein of unknown function (DUF418) BF39_3887 PF01773 Na+ dependent nucleoside transporter N-terminus BF39_3887 PF07662 Na+ dependent nucleoside transporter C-terminus BF39_3888 PF07662 Na+ dependent nucleoside transporter C-terminus BF39_3888 PF01773 Na+ dependent nucleoside transporter N-terminus BF39_3889 PF01235 Sodium:alanine symporter family BF39_3890 PF01235 Sodium:alanine symporter family BF39_3891 PF13460 NAD(P)H-binding BF39_3896 PF00248 Aldo/keto reductase family BF39_3897 PF07690 Major Facilitator Superfamily BF39_3898 PF01638 HxlR-like helix-turn-helix BF39_3899 PF07849 Protein of unknown function (DUF1641) BF39_39 PF08402 TOBE domain BF39_39 PF00005 ABC transporter BF39_390 PF17209 Hfq protein BF39_3900 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_3901 PF01479 S4 domain BF39_3901 PF00579 tRNA synthetases class I (W and Y) BF39_3902 PF01565 FAD binding domain BF39_3902 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF39_3904 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_3904 PF17202 Single cache domain 3 BF39_3904 PF00672 HAMP domain BF39_3906 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF39_3907 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF39_3910 PF13302 Acetyltransferase (GNAT) domain BF39_3911 PF06146 Phosphate-starvation-inducible E BF39_3914 PF00005 ABC transporter BF39_3915 PF01032 FecCD transport family BF39_3916 PF01032 FecCD transport family BF39_3918 PF00072 Response regulator receiver domain BF39_3918 PF00486 Transcriptional regulatory protein, C terminal BF39_3919 PF01668 SmpB protein BF39_392 PF01618 MotA/TolQ/ExbB proton channel family BF39_3920 PF00773 RNB domain BF39_3920 PF17876 Cold shock domain BF39_3920 PF00575 S1 RNA binding domain BF39_3920 PF08206 Ribonuclease B OB domain BF39_3921 PF12146 Serine aminopeptidase, S33 BF39_3922 PF03840 Preprotein translocase SecG subunit BF39_3923 PF04172 LrgB-like family BF39_3924 PF03788 LrgA family BF39_3925 PF01156 Inosine-uridine preferring nucleoside hydrolase BF39_393 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF39_393 PF00691 OmpA family BF39_394 PF00072 Response regulator receiver domain BF39_3942 PF04860 Phage portal protein BF39_3947 PF02899 Phage integrase, N-terminal SAM-like domain BF39_3947 PF00589 Phage integrase family BF39_3948 PF03952 Enolase, N-terminal domain BF39_3948 PF00113 Enolase, C-terminal TIM barrel domain BF39_3949 PF01676 Metalloenzyme superfamily BF39_3949 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF39_395 PF01584 CheW-like domain BF39_395 PF01627 Hpt domain BF39_395 PF02895 Signal transducing histidine kinase, homodimeric domain BF39_395 PF07194 P2 response regulator binding domain BF39_395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_3950 PF00121 Triosephosphate isomerase BF39_3951 PF00162 Phosphoglycerate kinase BF39_3952 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF39_3952 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF39_3953 PF04198 Putative sugar-binding domain BF39_3955 PF04963 Sigma-54 factor, core binding domain BF39_3955 PF00309 Sigma-54 factor, Activator interacting domain (AID) BF39_3955 PF04552 Sigma-54, DNA binding domain BF39_3959 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF39_396 PF01584 CheW-like domain BF39_396 PF02895 Signal transducing histidine kinase, homodimeric domain BF39_396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_396 PF07194 P2 response regulator binding domain BF39_396 PF01627 Hpt domain BF39_3960 PF07451 Stage V sporulation protein AD (SpoVAD) BF39_3961 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF39_3963 PF04239 Protein of unknown function (DUF421) BF39_3964 PF00574 Clp protease BF39_3965 PF00381 PTS HPr component phosphorylation site BF39_3966 PF02650 WhiA C-terminal HTH domain BF39_3966 PF14527 WhiA LAGLIDADG-like domain BF39_3966 PF10298 WhiA N-terminal LAGLIDADG-like domain BF39_3967 PF01933 Uncharacterised protein family UPF0052 BF39_3968 PF03668 P-loop ATPase protein family BF39_3969 PF00293 NUDIX domain BF39_397 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF39_397 PF04509 CheC-like family BF39_3971 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_3973 PF14602 Hexapeptide repeat of succinyl-transferase BF39_3974 PF13419 Haloacid dehalogenase-like hydrolase BF39_3975 PF01790 Prolipoprotein diacylglyceryl transferase BF39_3976 PF02603 HPr Serine kinase N terminus BF39_3976 PF07475 HPr Serine kinase C-terminal domain BF39_3977 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BF39_3979 PF17755 UvrA DNA-binding domain BF39_3979 PF00005 ABC transporter BF39_3979 PF17760 UvrA interaction domain BF39_3980 PF17757 UvrB interaction domain BF39_3980 PF02151 UvrB/uvrC motif BF39_3980 PF12344 Ultra-violet resistance protein B BF39_3980 PF04851 Type III restriction enzyme, res subunit BF39_3980 PF00271 Helicase conserved C-terminal domain BF39_3981 PF01385 Probable transposase BF39_3981 PF07282 Putative transposase DNA-binding domain BF39_3981 PF12323 Helix-turn-helix domain BF39_3984 PF07739 TipAS antibiotic-recognition domain BF39_3984 PF13411 MerR HTH family regulatory protein BF39_3988 PF03601 Conserved hypothetical protein 698 BF39_3989 PF03466 LysR substrate binding domain BF39_3989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_3990 PF09278 MerR, DNA binding BF39_3990 PF00376 MerR family regulatory protein BF39_3991 PF03358 NADPH-dependent FMN reductase BF39_3993 PF01906 Putative heavy-metal-binding BF39_3994 PF00005 ABC transporter BF39_3994 PF00664 ABC transporter transmembrane region BF39_3995 PF17820 PDZ domain BF39_3996 PF03572 Peptidase family S41 BF39_3996 PF01471 Putative peptidoglycan binding domain BF39_3996 PF17820 PDZ domain BF39_3997 PF02687 FtsX-like permease family BF39_3997 PF18075 FtsX extracellular domain BF39_3998 PF00005 ABC transporter BF39_3999 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF39_40 PF00528 Binding-protein-dependent transport system inner membrane component BF39_400 PF01739 CheR methyltransferase, SAM binding domain BF39_400 PF03705 CheR methyltransferase, all-alpha domain BF39_4000 PF00472 RF-1 domain BF39_4000 PF03462 PCRF domain BF39_4001 PF07516 SecA Wing and Scaffold domain BF39_4001 PF02810 SEC-C motif BF39_4001 PF07517 SecA DEAD-like domain BF39_4001 PF01043 SecA preprotein cross-linking domain BF39_4002 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BF39_4002 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF39_4003 PF00313 'Cold-shock' DNA-binding domain BF39_4005 PF00271 Helicase conserved C-terminal domain BF39_4005 PF04851 Type III restriction enzyme, res subunit BF39_4006 PF00877 NlpC/P60 family BF39_4006 PF01476 LysM domain BF39_4007 PF01638 HxlR-like helix-turn-helix BF39_4008 PF02645 Uncharacterised protein, DegV family COG1307 BF39_4009 PF01205 Uncharacterized protein family UPF0029 BF39_4009 PF09186 Domain of unknown function (DUF1949) BF39_4010 PF03816 Cell envelope-related transcriptional attenuator domain BF39_4011 PF02350 UDP-N-acetylglucosamine 2-epimerase BF39_4012 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF39_4012 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF39_4012 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF39_4013 PF00953 Glycosyl transferase family 4 BF39_4015 PF03610 PTS system fructose IIA component BF39_4015 PF00158 Sigma-54 interaction domain BF39_4015 PF00874 PRD domain BF39_4017 PF02417 Chromate transporter BF39_4018 PF04794 YdjC-like protein BF39_4019 PF11975 Family 4 glycosyl hydrolase C-terminal domain BF39_4019 PF02056 Family 4 glycosyl hydrolase BF39_4020 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF39_4021 PF02378 Phosphotransferase system, EIIC BF39_4022 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF39_4024 PF02675 S-adenosylmethionine decarboxylase BF39_4025 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF39_4026 PF02378 Phosphotransferase system, EIIC BF39_4027 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF39_4028 PF00375 Sodium:dicarboxylate symporter family BF39_4030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_4032 PF03466 LysR substrate binding domain BF39_4032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_4036 PF01654 Cytochrome bd terminal oxidase subunit I BF39_4037 PF02322 Cytochrome bd terminal oxidase subunit II BF39_4038 PF02040 Arsenical pump membrane protein BF39_4039 PF01964 Radical SAM ThiC family BF39_4039 PF13667 ThiC-associated domain BF39_4040 PF02652 L-lactate permease BF39_4042 PF09988 Uncharacterized metal-binding protein (DUF2227) BF39_4044 PF00884 Sulfatase BF39_4045 PF01063 Amino-transferase class IV BF39_4047 PF00877 NlpC/P60 family BF39_4047 PF01476 LysM domain BF39_4048 PF01773 Na+ dependent nucleoside transporter N-terminus BF39_4048 PF07662 Na+ dependent nucleoside transporter C-terminus BF39_4052 PF02028 BCCT, betaine/carnitine/choline family transporter BF39_4053 PF06725 3D domain BF39_4053 PF01476 LysM domain BF39_4058 PF04434 SWIM zinc finger BF39_4059 PF00176 SNF2 family N-terminal domain BF39_4059 PF00271 Helicase conserved C-terminal domain BF39_4059 PF12419 SNF2 Helicase protein BF39_406 PF00700 Bacterial flagellin C-terminal helical region BF39_406 PF00669 Bacterial flagellin N-terminal helical region BF39_4065 PF04545 Sigma-70, region 4 BF39_4065 PF04542 Sigma-70 region 2 BF39_4066 PF04893 Yip1 domain BF39_4067 PF02687 FtsX-like permease family BF39_4067 PF12704 MacB-like periplasmic core domain BF39_4068 PF00005 ABC transporter BF39_4072 PF07690 Major Facilitator Superfamily BF39_4075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4075 PF16736 Single Cache-like BF39_4075 PF00512 His Kinase A (phospho-acceptor) domain BF39_4075 PF00989 PAS fold BF39_4076 PF00486 Transcriptional regulatory protein, C terminal BF39_4076 PF00072 Response regulator receiver domain BF39_4077 PF16363 GDP-mannose 4,6 dehydratase BF39_4078 PF03816 Cell envelope-related transcriptional attenuator domain BF39_4079 PF07977 FabA-like domain BF39_4080 PF02350 UDP-N-acetylglucosamine 2-epimerase BF39_4081 PF08239 Bacterial SH3 domain BF39_4081 PF00005 ABC transporter BF39_4082 PF01061 ABC-2 type transporter BF39_4083 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF39_4083 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF39_4083 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF39_4091 PF12116 Stage III sporulation protein D BF39_4093 PF01551 Peptidase family M23 BF39_4095 PF00005 ABC transporter BF39_4096 PF04397 LytTr DNA-binding domain BF39_4096 PF00072 Response regulator receiver domain BF39_4097 PF00005 ABC transporter BF39_4098 PF08486 Stage II sporulation protein BF39_4099 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF39_41 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4101 PF06612 Protein of unknown function (DUF1146) BF39_4102 PF00361 Proton-conducting membrane transporter BF39_4103 PF00361 Proton-conducting membrane transporter BF39_4104 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF39_4104 PF00361 Proton-conducting membrane transporter BF39_4104 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BF39_4105 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BF39_4106 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BF39_4108 PF00146 NADH dehydrogenase BF39_4109 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BF39_411 PF00460 Flagella basal body rod protein BF39_4110 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BF39_4111 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BF39_4112 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BF39_4113 PF00990 Diguanylate cyclase, GGDEF domain BF39_4113 PF00563 EAL domain BF39_4113 PF03707 Bacterial signalling protein N terminal repeat BF39_4116 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF39_4116 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BF39_4117 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF39_4117 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF39_4118 PF00231 ATP synthase BF39_4119 PF00306 ATP synthase alpha/beta chain, C terminal domain BF39_4119 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF39_4119 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF39_412 PF00460 Flagella basal body rod protein BF39_412 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF39_4120 PF00213 ATP synthase delta (OSCP) subunit BF39_4121 PF00430 ATP synthase B/B' CF(0) BF39_4122 PF00137 ATP synthase subunit C BF39_4123 PF00119 ATP synthase A chain BF39_4124 PF03899 ATP synthase I chain BF39_4127 PF00464 Serine hydroxymethyltransferase BF39_4128 PF04260 Protein of unknown function (DUF436) BF39_4129 PF02502 Ribose/Galactose Isomerase BF39_413 PF02049 Flagellar hook-basal body complex protein FliE BF39_4130 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF39_4131 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF39_4132 PF07681 DoxX BF39_4133 PF01613 Flavin reductase like domain BF39_4135 PF02659 Putative manganese efflux pump BF39_4136 PF01300 Telomere recombination BF39_4136 PF03481 Putative GTP-binding controlling metal-binding BF39_4138 PF09551 Stage II sporulation protein R (spore_II_R) BF39_4139 PF17827 PrmC N-terminal domain BF39_4139 PF13847 Methyltransferase domain BF39_414 PF08345 Flagellar M-ring protein C-terminal BF39_414 PF01514 Secretory protein of YscJ/FliF family BF39_4140 PF00472 RF-1 domain BF39_4140 PF03462 PCRF domain BF39_4141 PF00265 Thymidine kinase BF39_4142 PF01197 Ribosomal protein L31 BF39_4143 PF07498 Rho termination factor, N-terminal domain BF39_4143 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF39_4143 PF07497 Rho termination factor, RNA-binding domain BF39_4144 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF39_4145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF39_4146 PF01116 Fructose-bisphosphate aldolase class-II BF39_4147 PF00072 Response regulator receiver domain BF39_4148 PF10740 Domain of unknown function (DUF2529) BF39_4149 PF00117 Glutamine amidotransferase class-I BF39_4149 PF06418 CTP synthase N-terminus BF39_4150 PF05066 HB1, ASXL, restriction endonuclease HTH domain BF39_4152 PF02770 Acyl-CoA dehydrogenase, middle domain BF39_4152 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF39_4152 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF39_4153 PF02770 Acyl-CoA dehydrogenase, middle domain BF39_4153 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF39_4153 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF39_4154 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF39_4154 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF39_4155 PF02803 Thiolase, C-terminal domain BF39_4155 PF00108 Thiolase, N-terminal domain BF39_4156 PF13183 4Fe-4S dicluster domain BF39_4156 PF02754 Cysteine-rich domain BF39_4157 PF13091 PLD-like domain BF39_4158 PF03851 UV-endonuclease UvdE BF39_4159 PF00563 EAL domain BF39_4159 PF00990 Diguanylate cyclase, GGDEF domain BF39_4159 PF03707 Bacterial signalling protein N terminal repeat BF39_416 PF01706 FliG C-terminal domain BF39_416 PF14842 FliG N-terminal domain BF39_416 PF14841 FliG middle domain BF39_4163 PF00196 Bacterial regulatory proteins, luxR family BF39_4163 PF00072 Response regulator receiver domain BF39_4164 PF07730 Histidine kinase BF39_4164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4166 PF00005 ABC transporter BF39_4167 PF00557 Metallopeptidase family M24 BF39_4170 PF01473 Putative cell wall binding repeat BF39_4170 PF02324 Glycosyl hydrolase family 70 BF39_4171 PF02225 PA domain BF39_4171 PF04389 Peptidase family M28 BF39_4175 PF04542 Sigma-70 region 2 BF39_4175 PF08281 Sigma-70, region 4 BF39_4176 PF00750 tRNA synthetases class I (R) BF39_4176 PF03485 Arginyl tRNA synthetase N terminal domain BF39_4176 PF05746 DALR anticodon binding domain BF39_4177 PF09148 Domain of unknown function (DUF1934) BF39_4178 PF17676 LD-carboxypeptidase C-terminal domain BF39_4178 PF02016 LD-carboxypeptidase N-terminal domain BF39_418 PF18269 T3SS EscN ATPase C-terminal domain BF39_418 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF39_418 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF39_4181 PF00491 Arginase family BF39_4182 PF17284 Spermidine synthase tetramerisation domain BF39_4183 PF07690 Major Facilitator Superfamily BF39_4184 PF13411 MerR HTH family regulatory protein BF39_4185 PF03009 Glycerophosphoryl diester phosphodiesterase family BF39_4186 PF00912 Transglycosylase BF39_4186 PF00905 Penicillin binding protein transpeptidase domain BF39_4187 PF08741 YwhD family BF39_4188 PF02163 Peptidase family M50 BF39_4189 PF01361 Tautomerase enzyme BF39_4190 PF01966 HD domain BF39_4191 PF01497 Periplasmic binding protein BF39_4192 PF00005 ABC transporter BF39_4193 PF01032 FecCD transport family BF39_4194 PF01032 FecCD transport family BF39_4195 PF01032 FecCD transport family BF39_4196 PF07293 Protein of unknown function (DUF1450) BF39_4199 PF03099 Biotin/lipoate A/B protein ligase family BF39_42 PF13416 Bacterial extracellular solute-binding protein BF39_4200 PF01515 Phosphate acetyl/butaryl transferase BF39_4202 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_4202 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_4203 PF07486 Cell Wall Hydrolase BF39_4204 PF09671 Spore coat protein (Spore_GerQ) BF39_4205 PF04241 Protein of unknown function (DUF423) BF39_4207 PF07885 Ion channel BF39_4207 PF02254 TrkA-N domain BF39_4208 PF00860 Permease family BF39_4210 PF12823 Domain of unknown function (DUF3817) BF39_4211 PF03167 Uracil DNA glycosylase superfamily BF39_4212 PF12679 ABC-2 family transporter protein BF39_4213 PF00005 ABC transporter BF39_4214 PF13472 GDSL-like Lipase/Acylhydrolase family BF39_4215 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF39_4215 PF00356 Bacterial regulatory proteins, lacI family BF39_4217 PF01842 ACT domain BF39_4217 PF00742 Homoserine dehydrogenase BF39_4217 PF03447 Homoserine dehydrogenase, NAD binding domain BF39_4218 PF04204 Homoserine O-succinyltransferase BF39_4219 PF01053 Cys/Met metabolism PLP-dependent enzyme BF39_4221 PF13419 Haloacid dehalogenase-like hydrolase BF39_4222 PF00027 Cyclic nucleotide-binding domain BF39_4223 PF02525 Flavodoxin-like fold BF39_4224 PF00072 Response regulator receiver domain BF39_4224 PF00196 Bacterial regulatory proteins, luxR family BF39_4225 PF07730 Histidine kinase BF39_4225 PF13185 GAF domain BF39_4226 PF07730 Histidine kinase BF39_4226 PF13185 GAF domain BF39_4227 PF08543 Phosphomethylpyrimidine kinase BF39_4228 PF07694 5TMR of 5TMR-LYT BF39_4228 PF00990 Diguanylate cyclase, GGDEF domain BF39_4229 PF04328 Selenoprotein, putative BF39_423 PF07559 Flagellar basal body protein FlaE BF39_423 PF00460 Flagella basal body rod protein BF39_423 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF39_4230 PF13722 5TM C-terminal transporter carbon starvation CstA BF39_4230 PF02554 Carbon starvation protein CstA BF39_4231 PF04397 LytTr DNA-binding domain BF39_4231 PF00072 Response regulator receiver domain BF39_4232 PF07690 Major Facilitator Superfamily BF39_4233 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF39_4236 PF03458 UPF0126 domain BF39_4237 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_4239 PF03061 Thioesterase superfamily BF39_4241 PF00535 Glycosyl transferase family 2 BF39_4242 PF12848 ABC transporter BF39_4242 PF00005 ABC transporter BF39_4247 PF00535 Glycosyl transferase family 2 BF39_4248 PF00440 Bacterial regulatory proteins, tetR family BF39_4249 PF00873 AcrB/AcrD/AcrF family BF39_4250 PF01625 Peptide methionine sulfoxide reductase BF39_4250 PF01641 SelR domain BF39_4251 PF01594 AI-2E family transporter BF39_4252 PF04172 LrgB-like family BF39_4253 PF03788 LrgA family BF39_4254 PF00072 Response regulator receiver domain BF39_4254 PF04397 LytTr DNA-binding domain BF39_4255 PF07694 5TMR of 5TMR-LYT BF39_4255 PF13492 GAF domain BF39_4255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4255 PF06580 Histidine kinase BF39_4256 PF07690 Major Facilitator Superfamily BF39_4257 PF02028 BCCT, betaine/carnitine/choline family transporter BF39_4258 PF02898 Nitric oxide synthase, oxygenase domain BF39_4259 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF39_4259 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF39_4261 PF02293 AmiS/UreI family transporter BF39_4263 PF16363 GDP-mannose 4,6 dehydratase BF39_4264 PF03006 Haemolysin-III related BF39_4266 PF03880 DbpA RNA binding domain BF39_4266 PF00270 DEAD/DEAH box helicase BF39_4266 PF00271 Helicase conserved C-terminal domain BF39_4268 PF00478 IMP dehydrogenase / GMP reductase domain BF39_4269 PF08439 Oligopeptidase F BF39_4269 PF01432 Peptidase family M3 BF39_427 PF01584 CheW-like domain BF39_427 PF00072 Response regulator receiver domain BF39_4271 PF02590 Predicted SPOUT methyltransferase BF39_4273 PF13180 PDZ domain BF39_4274 PF00753 Metallo-beta-lactamase superfamily BF39_4275 PF09648 YycH protein BF39_4276 PF07435 YycH protein BF39_4277 PF00672 HAMP domain BF39_4277 PF00512 His Kinase A (phospho-acceptor) domain BF39_4277 PF13426 PAS domain BF39_4277 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4278 PF00072 Response regulator receiver domain BF39_4278 PF00486 Transcriptional regulatory protein, C terminal BF39_428 PF12181 DNA binding domain of the motility gene repressor (MogR) BF39_4283 PF00709 Adenylosuccinate synthetase BF39_4284 PF03796 DnaB-like helicase C terminal domain BF39_4284 PF00772 DnaB-like helicase N terminal domain BF39_4285 PF03948 Ribosomal protein L9, C-terminal domain BF39_4285 PF01281 Ribosomal protein L9, N-terminal domain BF39_4286 PF01368 DHH family BF39_4286 PF02272 DHHA1 domain BF39_4287 PF09991 Predicted membrane protein (DUF2232) BF39_4288 PF01084 Ribosomal protein S18 BF39_4289 PF00436 Single-strand binding protein family BF39_429 PF00535 Glycosyl transferase family 2 BF39_4290 PF01250 Ribosomal protein S6 BF39_4291 PF01926 50S ribosome-binding GTPase BF39_4291 PF06071 Protein of unknown function (DUF933) BF39_4292 PF06107 Bacterial protein of unknown function (DUF951) BF39_4293 PF00924 Mechanosensitive ion channel BF39_4294 PF06866 Protein of unknown function (DUF1256) BF39_4295 PF17762 HTH domain found in ParB protein BF39_4295 PF02195 ParB-like nuclease domain BF39_4296 PF13614 AAA domain BF39_4297 PF02195 ParB-like nuclease domain BF39_4297 PF17762 HTH domain found in ParB protein BF39_4298 PF02527 rRNA small subunit methyltransferase G BF39_4299 PF01134 Glucose inhibited division protein A BF39_4299 PF13932 GidA associated domain BF39_4300 PF01926 50S ribosome-binding GTPase BF39_4300 PF12631 MnmE helical domain BF39_4300 PF10396 GTP-binding protein TrmE N-terminus BF39_4301 PF14804 Jag N-terminus BF39_4301 PF01424 R3H domain BF39_4302 PF02096 60Kd inner membrane protein BF39_4303 PF00825 Ribonuclease P BF39_4304 PF00468 Ribosomal protein L34 BF39_4305 PF08299 Bacterial dnaA protein helix-turn-helix BF39_4305 PF00308 Bacterial dnaA protein BF39_4305 PF11638 DnaA N-terminal domain BF39_4306 PF00712 DNA polymerase III beta subunit, N-terminal domain BF39_4306 PF02768 DNA polymerase III beta subunit, C-terminal domain BF39_4306 PF02767 DNA polymerase III beta subunit, central domain BF39_4308 PF02463 RecF/RecN/SMC N terminal domain BF39_4309 PF00204 DNA gyrase B BF39_4309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4309 PF00986 DNA gyrase B subunit, carboxyl terminus BF39_4309 PF01751 Toprim domain BF39_4310 PF03989 DNA gyrase C-terminal domain, beta-propeller BF39_4310 PF00521 DNA gyrase/topoisomerase IV, subunit A BF39_4315 PF14175 YaaC-like Protein BF39_4316 PF00478 IMP dehydrogenase / GMP reductase domain BF39_4316 PF00571 CBS domain BF39_4317 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_4317 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_4318 PF01680 SOR/SNZ family BF39_4319 PF01174 SNO glutamine amidotransferase family BF39_4320 PF02403 Seryl-tRNA synthetase N-terminal domain BF39_4320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF39_4323 PF01712 Deoxynucleoside kinase BF39_4324 PF01712 Deoxynucleoside kinase BF39_4325 PF00857 Isochorismatase family BF39_4326 PF14437 MafB19-like deaminase BF39_4327 PF12169 DNA polymerase III subunits gamma and tau domain III BF39_4328 PF02575 YbaB/EbfC DNA-binding family BF39_4329 PF13662 Toprim domain BF39_4329 PF02132 RecR protein BF39_4330 PF10704 Protein of unknown function (DUF2508) BF39_4331 PF07441 SigmaK-factor processing regulatory protein BofA BF39_4337 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF39_4337 PF01276 Orn/Lys/Arg decarboxylase, major domain BF39_4338 PF02223 Thymidylate kinase BF39_4339 PF09115 DNA polymerase III, delta subunit, C terminal BF39_4340 PF04468 PSP1 C-terminal conserved region BF39_4341 PF06156 Initiation control protein YabA BF39_4342 PF05175 Methyltransferase small domain BF39_4343 PF01541 GIY-YIG catalytic domain BF39_4344 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF39_4345 PF18277 AbrB C-terminal domain BF39_4345 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF39_4346 PF08264 Anticodon-binding domain of tRNA BF39_4346 PF09334 tRNA synthetases class I (M) BF39_4346 PF01588 Putative tRNA binding domain BF39_4347 PF01026 TatD related DNase BF39_4348 PF13331 Domain of unknown function (DUF4093) BF39_4348 PF13662 Toprim domain BF39_4349 PF00398 Ribosomal RNA adenine dimethylase BF39_435 PF13181 Tetratricopeptide repeat BF39_435 PF00535 Glycosyl transferase family 2 BF39_4350 PF05582 YabG peptidase U57 BF39_4351 PF06257 Biofilm formation stimulator VEG BF39_4352 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF39_4353 PF00288 GHMP kinases N terminal domain BF39_4353 PF08544 GHMP kinases C terminal BF39_4354 PF09182 Bacterial purine repressor, N-terminal BF39_4354 PF00156 Phosphoribosyl transferase domain BF39_4355 PF01042 Endoribonuclease L-PSP BF39_4356 PF04026 SpoVG BF39_4357 PF00132 Bacterial transferase hexapeptide (six repeats) BF39_4357 PF00483 Nucleotidyl transferase BF39_4358 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF39_4358 PF14572 Phosphoribosyl synthetase-associated domain BF39_4359 PF01195 Peptidyl-tRNA hydrolase BF39_4361 PF17757 UvrB interaction domain BF39_4361 PF00270 DEAD/DEAH box helicase BF39_4361 PF00271 Helicase conserved C-terminal domain BF39_4361 PF02559 CarD-like/TRCF domain BF39_4361 PF03461 TRCF domain BF39_4362 PF15714 Stage V sporulation protein T C-terminal, transcription factor BF39_4362 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF39_4363 PF01943 Polysaccharide biosynthesis protein BF39_4363 PF14667 Polysaccharide biosynthesis C-terminal domain BF39_4364 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF39_4364 PF03819 MazG nucleotide pyrophosphohydrolase domain BF39_4365 PF01479 S4 domain BF39_4366 PF07873 YabP family BF39_4367 PF09578 Spore cortex protein YabQ (Spore_YabQ) BF39_4369 PF00575 S1 RNA binding domain BF39_4372 PF07228 Stage II sporulation protein E (SpoIIE) BF39_4373 PF11734 TilS substrate C-terminal domain BF39_4373 PF09179 TilS substrate binding domain BF39_4373 PF01171 PP-loop family BF39_4374 PF11734 TilS substrate C-terminal domain BF39_4374 PF01171 PP-loop family BF39_4374 PF09179 TilS substrate binding domain BF39_4376 PF00004 ATPase family associated with various cellular activities (AAA) BF39_4376 PF06480 FtsH Extracellular BF39_4376 PF17862 AAA+ lid domain BF39_4376 PF01434 Peptidase family M41 BF39_4377 PF03309 Type III pantothenate kinase BF39_4378 PF01430 Hsp33 protein BF39_4379 PF00291 Pyridoxal-phosphate dependent enzyme BF39_4380 PF04715 Anthranilate synthase component I, N terminal region BF39_4380 PF00425 chorismate binding enzyme BF39_4381 PF00117 Glutamine amidotransferase class-I BF39_4382 PF01063 Amino-transferase class IV BF39_4383 PF00809 Pterin binding enzyme BF39_4384 PF02152 Dihydroneopterin aldolase BF39_4385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF39_4386 PF01381 Helix-turn-helix BF39_4387 PF01207 Dihydrouridine synthase (Dus) BF39_4388 PF01336 OB-fold nucleic acid binding domain BF39_4388 PF00152 tRNA synthetases class II (D, K and N) BF39_4393 PF17727 CtsR C-terminal dimerization domain BF39_4393 PF05848 CtsR N-terminal HTH domain BF39_4394 PF02151 UvrB/uvrC motif BF39_4395 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BF39_4396 PF00004 ATPase family associated with various cellular activities (AAA) BF39_4396 PF07724 AAA domain (Cdc48 subfamily) BF39_4396 PF10431 C-terminal, D2-small domain, of ClpB protein BF39_4396 PF17871 AAA lid domain BF39_4396 PF02861 Clp amino terminal domain, pathogenicity island component BF39_4397 PF18073 Rubredoxin metal binding domain BF39_4398 PF10635 DisA bacterial checkpoint controller linker region BF39_4398 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF39_44 PF03176 MMPL family BF39_440 PF00669 Bacterial flagellin N-terminal helical region BF39_440 PF00700 Bacterial flagellin C-terminal helical region BF39_4400 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF39_4401 PF02542 YgbB family BF39_4402 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF39_4403 PF06426 Serine acetyltransferase, N-terminal BF39_4403 PF00132 Bacterial transferase hexapeptide (six repeats) BF39_4404 PF01406 tRNA synthetases class I (C) catalytic domain BF39_4404 PF09190 DALR domain BF39_4405 PF00636 Ribonuclease III domain BF39_4406 PF00588 SpoU rRNA Methylase family BF39_4406 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF39_4407 PF05991 YacP-like NYN domain BF39_4408 PF04542 Sigma-70 region 2 BF39_4408 PF08281 Sigma-70, region 4 BF39_4409 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BF39_441 PF01464 Transglycosylase SLT domain BF39_4410 PF02357 Transcription termination factor nusG BF39_4410 PF00467 KOW motif BF39_4411 PF00298 Ribosomal protein L11, RNA binding domain BF39_4411 PF03946 Ribosomal protein L11, N-terminal domain BF39_4412 PF00687 Ribosomal protein L1p/L10e family BF39_4413 PF00466 Ribosomal protein L10 BF39_4414 PF16320 Ribosomal protein L7/L12 dimerisation domain BF39_4414 PF00542 Ribosomal protein L7/L12 C-terminal domain BF39_4415 PF05175 Methyltransferase small domain BF39_4416 PF00562 RNA polymerase Rpb2, domain 6 BF39_4416 PF10385 RNA polymerase beta subunit external 1 domain BF39_4416 PF04565 RNA polymerase Rpb2, domain 3 BF39_4416 PF04561 RNA polymerase Rpb2, domain 2 BF39_4416 PF04563 RNA polymerase beta subunit BF39_4416 PF04560 RNA polymerase Rpb2, domain 7 BF39_4417 PF04983 RNA polymerase Rpb1, domain 3 BF39_4417 PF00623 RNA polymerase Rpb1, domain 2 BF39_4417 PF04997 RNA polymerase Rpb1, domain 1 BF39_4417 PF04998 RNA polymerase Rpb1, domain 5 BF39_4417 PF05000 RNA polymerase Rpb1, domain 4 BF39_4418 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF39_4419 PF00164 Ribosomal protein S12/S23 BF39_442 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF39_442 PF02154 Flagellar motor switch protein FliM BF39_4420 PF00177 Ribosomal protein S7p/S5e BF39_4421 PF14492 Elongation Factor G, domain II BF39_4421 PF03144 Elongation factor Tu domain 2 BF39_4421 PF03764 Elongation factor G, domain IV BF39_4421 PF00009 Elongation factor Tu GTP binding domain BF39_4421 PF00679 Elongation factor G C-terminus BF39_4422 PF03143 Elongation factor Tu C-terminal domain BF39_4422 PF03144 Elongation factor Tu domain 2 BF39_4422 PF00009 Elongation factor Tu GTP binding domain BF39_4423 PF00338 Ribosomal protein S10p/S20e BF39_4424 PF00297 Ribosomal protein L3 BF39_4425 PF00573 Ribosomal protein L4/L1 family BF39_4426 PF00276 Ribosomal protein L23 BF39_4427 PF03947 Ribosomal Proteins L2, C-terminal domain BF39_4427 PF00181 Ribosomal Proteins L2, RNA binding domain BF39_4428 PF00203 Ribosomal protein S19 BF39_4429 PF00237 Ribosomal protein L22p/L17e BF39_4430 PF00189 Ribosomal protein S3, C-terminal domain BF39_4430 PF07650 KH domain BF39_4431 PF00252 Ribosomal protein L16p/L10e BF39_4432 PF00831 Ribosomal L29 protein BF39_4433 PF00366 Ribosomal protein S17 BF39_4434 PF00238 Ribosomal protein L14p/L23e BF39_4435 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BF39_4435 PF00467 KOW motif BF39_4436 PF00673 ribosomal L5P family C-terminus BF39_4436 PF00281 Ribosomal protein L5 BF39_4437 PF00253 Ribosomal protein S14p/S29e BF39_4438 PF00410 Ribosomal protein S8 BF39_4439 PF00347 Ribosomal protein L6 BF39_444 PF04509 CheC-like family BF39_444 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF39_4440 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BF39_4441 PF00333 Ribosomal protein S5, N-terminal domain BF39_4441 PF03719 Ribosomal protein S5, C-terminal domain BF39_4442 PF00327 Ribosomal protein L30p/L7e BF39_4443 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BF39_4444 PF00344 SecY translocase BF39_4445 PF05191 Adenylate kinase, active site lid BF39_4446 PF00557 Metallopeptidase family M24 BF39_4447 PF01176 Translation initiation factor 1A / IF-1 BF39_4448 PF00444 Ribosomal protein L36 BF39_4449 PF00416 Ribosomal protein S13/S18 BF39_4450 PF00411 Ribosomal protein S11 BF39_4451 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF39_4451 PF01000 RNA polymerase Rpb3/RpoA insert domain BF39_4451 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF39_4452 PF01196 Ribosomal protein L17 BF39_4453 PF00005 ABC transporter BF39_4456 PF02361 Cobalt transport protein BF39_4457 PF01416 tRNA pseudouridine synthase BF39_4458 PF00572 Ribosomal protein L13 BF39_4459 PF00380 Ribosomal protein S9/S16 BF39_446 PF00813 FliP family BF39_4461 PF01520 N-acetylmuramoyl-L-alanine amidase BF39_4462 PF10609 NUBPL iron-transfer P-loop NTPase BF39_4463 PF17898 Spore germination GerD central core domain BF39_4464 PF14089 KinB-signalling pathway activation in sporulation BF39_4465 PF01522 Polysaccharide deacetylase BF39_447 PF01313 Bacterial export proteins, family 3 BF39_4480 PF02595 Glycerate kinase family BF39_4481 PF02595 Glycerate kinase family BF39_4482 PF00491 Arginase family BF39_4483 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF39_4484 PF07949 YbbR-like protein BF39_4485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF39_4485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF39_4485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF39_4485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF39_4486 PF01380 SIS domain BF39_4487 PF00561 alpha/beta hydrolase fold BF39_4488 PF00392 Bacterial regulatory proteins, gntR family BF39_4488 PF07729 FCD domain BF39_4489 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_4489 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_449 PF01312 FlhB HrpN YscU SpaS Family BF39_4490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_4490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_4491 PF02447 GntP family permease BF39_4492 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF39_4492 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF39_4493 PF07676 WD40-like Beta Propeller Repeat BF39_4493 PF00326 Prolyl oligopeptidase family BF39_450 PF00771 FHIPEP family BF39_4502 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4503 PF09383 NIL domain BF39_4503 PF00005 ABC transporter BF39_4504 PF03180 NLPA lipoprotein BF39_4507 PF01565 FAD binding domain BF39_4508 PF07690 Major Facilitator Superfamily BF39_451 PF00448 SRP54-type protein, GTPase domain BF39_4510 PF07690 Major Facilitator Superfamily BF39_4513 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4514 PF12911 N-terminal TM domain of oligopeptide transport permease C BF39_4514 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_4515 PF00005 ABC transporter BF39_4516 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_4516 PF00005 ABC transporter BF39_4517 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_4519 PF12833 Helix-turn-helix domain BF39_452 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF39_452 PF00460 Flagella basal body rod protein BF39_4522 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_4523 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_4524 PF00248 Aldo/keto reductase family BF39_4525 PF03807 NADP oxidoreductase coenzyme F420-dependent BF39_4525 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF39_4526 PF04973 Nicotinamide mononucleotide transporter BF39_4527 PF06800 Sugar transport protein BF39_4528 PF00528 Binding-protein-dependent transport system inner membrane component BF39_453 PF01411 tRNA synthetases class II (A) BF39_453 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF39_453 PF02272 DHHA1 domain BF39_4531 PF12727 PBP superfamily domain BF39_4531 PF12728 Helix-turn-helix domain BF39_4534 PF03466 LysR substrate binding domain BF39_4534 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_4535 PF00892 EamA-like transporter family BF39_4536 PF14142 YrzO-like protein BF39_4538 PF01553 Acyltransferase BF39_4540 PF00356 Bacterial regulatory proteins, lacI family BF39_4540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF39_4542 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_4542 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_4545 PF01026 TatD related DNase BF39_4546 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BF39_4550 PF00005 ABC transporter BF39_4550 PF16326 ABC transporter C-terminal domain BF39_4550 PF12848 ABC transporter BF39_4553 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_4554 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4556 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_4556 PF00005 ABC transporter BF39_4557 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_4557 PF00005 ABC transporter BF39_4565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_4566 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF39_4568 PF07690 Major Facilitator Superfamily BF39_4569 PF01820 D-ala D-ala ligase N-terminus BF39_4569 PF07478 D-ala D-ala ligase C-terminus BF39_4570 PF07478 D-ala D-ala ligase C-terminus BF39_4570 PF01820 D-ala D-ala ligase N-terminus BF39_4571 PF01225 Mur ligase family, catalytic domain BF39_4571 PF02875 Mur ligase family, glutamate ligase domain BF39_4571 PF08245 Mur ligase middle domain BF39_4572 PF00271 Helicase conserved C-terminal domain BF39_4572 PF00270 DEAD/DEAH box helicase BF39_4573 PF01694 Rhomboid family BF39_4574 PF03851 UV-endonuclease UvdE BF39_4575 PF01648 4'-phosphopantetheinyl transferase superfamily BF39_4577 PF00842 Alanine racemase, C-terminal domain BF39_4577 PF01168 Alanine racemase, N-terminal domain BF39_4578 PF01402 Ribbon-helix-helix protein, copG family BF39_4579 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BF39_458 PF00440 Bacterial regulatory proteins, tetR family BF39_458 PF17932 Tetracyclin repressor-like, C-terminal domain BF39_4580 PF17674 HHH domain BF39_4580 PF00575 S1 RNA binding domain BF39_4580 PF09371 Tex-like protein N-terminal domain BF39_4580 PF16921 Tex protein YqgF-like domain BF39_4581 PF17283 SprT-like zinc ribbon domain BF39_4581 PF10263 SprT-like family BF39_459 PF17329 Family of unknown function (DUF5367) BF39_4599 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BF39_46 PF01479 S4 domain BF39_46 PF00849 RNA pseudouridylate synthase BF39_4600 PF00814 Glycoprotease family BF39_4601 PF00583 Acetyltransferase (GNAT) family BF39_4602 PF00814 Glycoprotease family BF39_4603 PF00005 ABC transporter BF39_4603 PF16326 ABC transporter C-terminal domain BF39_4603 PF12848 ABC transporter BF39_4604 PF06971 Putative DNA-binding protein N-terminus BF39_4604 PF02629 CoA binding domain BF39_4606 PF02517 CPBP intramembrane metalloprotease BF39_4607 PF00166 Chaperonin 10 Kd subunit BF39_4608 PF00118 TCP-1/cpn60 chaperonin family BF39_4609 PF02540 NAD synthase BF39_4609 PF00117 Glutamine amidotransferase class-I BF39_4609 PF00958 GMP synthase C terminal domain BF39_4610 PF00860 Permease family BF39_4611 PF00072 Response regulator receiver domain BF39_4611 PF00486 Transcriptional regulatory protein, C terminal BF39_4612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4612 PF00512 His Kinase A (phospho-acceptor) domain BF39_4612 PF00989 PAS fold BF39_4612 PF16736 Single Cache-like BF39_4617 PF14307 Glycosyltransferase WbsX BF39_4617 PF05045 Rhamnan synthesis protein F BF39_462 PF03992 Antibiotic biosynthesis monooxygenase BF39_4620 PF08241 Methyltransferase domain BF39_4626 PF00535 Glycosyl transferase family 2 BF39_463 PF08141 Small acid-soluble spore protein H family BF39_4632 PF02673 Bacitracin resistance protein BacA BF39_4634 PF00005 ABC transporter BF39_4635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4635 PF00512 His Kinase A (phospho-acceptor) domain BF39_4636 PF00486 Transcriptional regulatory protein, C terminal BF39_4636 PF00072 Response regulator receiver domain BF39_4640 PF00731 AIR carboxylase BF39_4641 PF02222 ATP-grasp domain BF39_4641 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BF39_4642 PF10397 Adenylosuccinate lyase C-terminus BF39_4642 PF00206 Lyase BF39_4643 PF01259 SAICAR synthetase BF39_4644 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BF39_4646 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BF39_4646 PF02769 AIR synthase related protein, C-terminal domain BF39_4646 PF00586 AIR synthase related protein, N-terminal domain BF39_4647 PF00156 Phosphoribosyl transferase domain BF39_4648 PF00586 AIR synthase related protein, N-terminal domain BF39_4648 PF02769 AIR synthase related protein, C-terminal domain BF39_4649 PF00551 Formyl transferase BF39_4650 PF02142 MGS-like domain BF39_4650 PF01808 AICARFT/IMPCHase bienzyme BF39_4651 PF02844 Phosphoribosylglycinamide synthetase, N domain BF39_4651 PF02843 Phosphoribosylglycinamide synthetase, C domain BF39_4651 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF39_4655 PF01884 PcrB family BF39_4656 PF00580 UvrD/REP helicase N-terminal domain BF39_4656 PF13361 UvrD-like helicase C-terminal domain BF39_4657 PF12826 Helix-hairpin-helix motif BF39_4657 PF03120 NAD-dependent DNA ligase OB-fold domain BF39_4657 PF00533 BRCA1 C Terminus (BRCT) domain BF39_4657 PF01653 NAD-dependent DNA ligase adenylation domain BF39_4657 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF39_4658 PF07537 CamS sex pheromone cAM373 precursor BF39_4659 PF01925 Sulfite exporter TauE/SafE BF39_4660 PF00171 Aldehyde dehydrogenase family BF39_4662 PF00857 Isochorismatase family BF39_4663 PF00005 ABC transporter BF39_4663 PF09383 NIL domain BF39_4664 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4665 PF03180 NLPA lipoprotein BF39_4668 PF02374 Anion-transporting ATPase BF39_4668 PF17886 HSP20-like domain found in ArsA BF39_4669 PF02374 Anion-transporting ATPase BF39_4669 PF17886 HSP20-like domain found in ArsA BF39_4670 PF01047 MarR family BF39_4671 PF05360 yiaA/B two helix domain BF39_4672 PF02686 Glu-tRNAGln amidotransferase C subunit BF39_4673 PF01425 Amidase BF39_4674 PF02934 GatB/GatE catalytic domain BF39_4674 PF02637 GatB domain BF39_4675 PF00781 Diacylglycerol kinase catalytic domain BF39_4676 PF13419 Haloacid dehalogenase-like hydrolase BF39_4677 PF00202 Aminotransferase class-III BF39_468 PF08402 TOBE domain BF39_468 PF00005 ABC transporter BF39_4680 PF00171 Aldehyde dehydrogenase family BF39_4681 PF00893 Small Multidrug Resistance protein BF39_4682 PF02073 Thermophilic metalloprotease (M29) BF39_4685 PF07670 Nucleoside recognition BF39_4685 PF01773 Na+ dependent nucleoside transporter N-terminus BF39_4685 PF07662 Na+ dependent nucleoside transporter C-terminus BF39_4686 PF01938 TRAM domain BF39_4686 PF05958 tRNA (Uracil-5-)-methyltransferase BF39_4686 PF02475 Met-10+ like-protein BF39_4687 PF01207 Dihydrouridine synthase (Dus) BF39_4689 PF07308 Protein of unknown function (DUF1456) BF39_4692 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF39_4692 PF13378 Enolase C-terminal domain-like BF39_4695 PF07687 Peptidase dimerisation domain BF39_4695 PF01546 Peptidase family M20/M25/M40 BF39_4697 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_4697 PF13192 Thioredoxin domain BF39_4698 PF00578 AhpC/TSA family BF39_4699 PF01636 Phosphotransferase enzyme family BF39_470 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4701 PF00596 Class II Aldolase and Adducin N-terminal domain BF39_4702 PF01032 FecCD transport family BF39_4703 PF01032 FecCD transport family BF39_4704 PF01497 Periplasmic binding protein BF39_4705 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_4707 PF12728 Helix-turn-helix domain BF39_471 PF00753 Metallo-beta-lactamase superfamily BF39_471 PF12706 Beta-lactamase superfamily domain BF39_4713 PF00989 PAS fold BF39_4713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4713 PF13188 PAS domain BF39_4713 PF00512 His Kinase A (phospho-acceptor) domain BF39_4713 PF13426 PAS domain BF39_4717 PF10127 RNA repair pathway DNA polymerase beta family BF39_4718 PF07690 Major Facilitator Superfamily BF39_4719 PF01266 FAD dependent oxidoreductase BF39_4719 PF00355 Rieske [2Fe-2S] domain BF39_4721 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4722 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF39_4723 PF00005 ABC transporter BF39_4724 PF00672 HAMP domain BF39_4724 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_4724 PF12729 Four helix bundle sensory module for signal transduction BF39_4725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_4725 PF12729 Four helix bundle sensory module for signal transduction BF39_4725 PF00672 HAMP domain BF39_4726 PF00128 Alpha amylase, catalytic domain BF39_4726 PF16657 Maltogenic Amylase, C-terminal domain BF39_4727 PF02378 Phosphotransferase system, EIIC BF39_4727 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF39_4727 PF00367 phosphotransferase system, EIIB BF39_4728 PF03372 Endonuclease/Exonuclease/phosphatase family BF39_4729 PF01061 ABC-2 type transporter BF39_473 PF10787 Uncharacterised protein from bacillus cereus group BF39_4730 PF01131 DNA topoisomerase BF39_4730 PF01751 Toprim domain BF39_4731 PF02110 Hydroxyethylthiazole kinase family BF39_4732 PF02581 Thiamine monophosphate synthase BF39_4733 PF03605 Anaerobic c4-dicarboxylate membrane transporter BF39_4734 PF00672 HAMP domain BF39_4734 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_4735 PF01910 Thiamine-binding protein BF39_4736 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4738 PF00005 ABC transporter BF39_4739 PF12848 ABC transporter BF39_4739 PF00005 ABC transporter BF39_4740 PF00041 Fibronectin type III domain BF39_4740 PF00704 Glycosyl hydrolases family 18 BF39_4744 PF00440 Bacterial regulatory proteins, tetR family BF39_4744 PF08360 QacR-like protein, C-terminal region BF39_4748 PF11700 Vacuole effluxer Atg22 like BF39_4751 PF09180 Prolyl-tRNA synthetase, C-terminal BF39_4751 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF39_4751 PF03129 Anticodon binding domain BF39_4753 PF00480 ROK family BF39_4754 PF02342 TerD domain BF39_4755 PF02342 TerD domain BF39_4756 PF02342 TerD domain BF39_4757 PF03741 Integral membrane protein TerC family BF39_4758 PF14266 Putative component of 'biosynthetic module' BF39_4759 PF05816 Toxic anion resistance protein (TelA) BF39_476 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_476 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_4760 PF00690 Cation transporter/ATPase, N-terminus BF39_4760 PF00689 Cation transporting ATPase, C-terminus BF39_4761 PF06569 Protein of unknown function (DUF1128) BF39_4762 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF39_4764 PF03631 Virulence factor BrkB BF39_4766 PF00892 EamA-like transporter family BF39_4768 PF10502 Signal peptidase, peptidase S26 BF39_4769 PF10502 Signal peptidase, peptidase S26 BF39_4771 PF09335 SNARE associated Golgi protein BF39_4774 PF16242 Pyridoxamine 5'-phosphate oxidase like BF39_4775 PF01699 Sodium/calcium exchanger protein BF39_4776 PF14167 YfkD-like protein BF39_4777 PF04055 Radical SAM superfamily BF39_4777 PF08756 YfkB-like domain BF39_4779 PF05681 Fumarate hydratase (Fumerase) BF39_4779 PF05683 Fumarase C-terminus BF39_478 PF00300 Histidine phosphatase superfamily (branch 1) BF39_4780 PF01522 Polysaccharide deacetylase BF39_4782 PF00730 HhH-GPD superfamily base excision DNA repair protein BF39_4783 PF01938 TRAM domain BF39_4783 PF05958 tRNA (Uracil-5-)-methyltransferase BF39_4784 PF00589 Phage integrase family BF39_4784 PF14659 Phage integrase, N-terminal SAM-like domain BF39_4788 PF01381 Helix-turn-helix BF39_4795 PF01695 IstB-like ATP binding protein BF39_4795 PF07319 Primosomal protein DnaI N-terminus BF39_48 PF00188 Cysteine-rich secretory protein family BF39_4840 PF01183 Glycosyl hydrolases family 25 BF39_4842 PF01416 tRNA pseudouridine synthase BF39_4844 PF00158 Sigma-54 interaction domain BF39_4844 PF13426 PAS domain BF39_4844 PF02954 Bacterial regulatory protein, Fis family BF39_4846 PF00324 Amino acid permease BF39_4847 PF01546 Peptidase family M20/M25/M40 BF39_4847 PF07687 Peptidase dimerisation domain BF39_485 PF13537 Glutamine amidotransferase domain BF39_485 PF00733 Asparagine synthase BF39_4852 PF04960 Glutaminase BF39_4853 PF02378 Phosphotransferase system, EIIC BF39_4853 PF00367 phosphotransferase system, EIIB BF39_4854 PF00144 Beta-lactamase BF39_4857 PF00535 Glycosyl transferase family 2 BF39_4858 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF39_4858 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF39_4858 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF39_4859 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF39_4859 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF39_4859 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF39_4860 PF01370 NAD dependent epimerase/dehydratase family BF39_4860 PF00551 Formyl transferase BF39_4860 PF02911 Formyl transferase, C-terminal domain BF39_4861 PF00535 Glycosyl transferase family 2 BF39_4862 PF02901 Pyruvate formate lyase-like BF39_4862 PF01228 Glycine radical BF39_4863 PF04055 Radical SAM superfamily BF39_4864 PF04101 Glycosyltransferase family 28 C-terminal domain BF39_4864 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF39_4867 PF01979 Amidohydrolase family BF39_4868 PF08338 Domain of unknown function (DUF1731) BF39_4868 PF01370 NAD dependent epimerase/dehydratase family BF39_4869 PF02631 RecX family BF39_4872 PF08176 Small acid-soluble spore protein K family BF39_4873 PF14043 WVELL protein BF39_4874 PF04307 LexA-binding, inner membrane-associated putative hydrolase BF39_4875 PF00730 HhH-GPD superfamily base excision DNA repair protein BF39_4875 PF14815 NUDIX domain BF39_4877 PF04259 Small, acid-soluble spore protein, gamma-type BF39_4878 PF14182 YgaB-like protein BF39_4879 PF04167 Protein of unknown function (DUF402) BF39_4880 PF00664 ABC transporter transmembrane region BF39_4880 PF00005 ABC transporter BF39_4881 PF06081 Aromatic acid exporter family member 1 BF39_4882 PF01645 Conserved region in glutamate synthase BF39_4882 PF00310 Glutamine amidotransferases class-II BF39_4882 PF01493 GXGXG motif BF39_4882 PF04898 Glutamate synthase central domain BF39_4883 PF00202 Aminotransferase class-III BF39_4884 PF00005 ABC transporter BF39_4887 PF07885 Ion channel BF39_4888 PF00578 AhpC/TSA family BF39_4889 PF01475 Ferric uptake regulator family BF39_489 PF16916 Dimerisation domain of Zinc Transporter BF39_489 PF01545 Cation efflux family BF39_4890 PF11023 Zinc-ribbon containing domain BF39_49 PF02754 Cysteine-rich domain BF39_49 PF13183 4Fe-4S dicluster domain BF39_491 PF00392 Bacterial regulatory proteins, gntR family BF39_491 PF07729 FCD domain BF39_4912 PF01709 Transcriptional regulator BF39_4913 PF13344 Haloacid dehalogenase-like hydrolase BF39_4913 PF00293 NUDIX domain BF39_4914 PF00912 Transglycosylase BF39_4914 PF00905 Penicillin binding protein transpeptidase domain BF39_4915 PF13462 Thioredoxin BF39_4917 PF08331 Domain of unknown function (DUF1730) BF39_4918 PF12671 Putative amidase domain BF39_4919 PF00588 SpoU rRNA Methylase family BF39_492 PF00892 EamA-like transporter family BF39_4920 PF03707 Bacterial signalling protein N terminal repeat BF39_4920 PF00563 EAL domain BF39_4920 PF00990 Diguanylate cyclase, GGDEF domain BF39_4922 PF08298 PrkA AAA domain BF39_4922 PF06798 PrkA serine protein kinase C-terminal domain BF39_4923 PF04285 Protein of unknown function (DUF444) BF39_4926 PF02028 BCCT, betaine/carnitine/choline family transporter BF39_4927 PF01752 Collagenase BF39_4927 PF08453 Peptidase family M9 N-terminal BF39_4927 PF18496 Collagenase G catalytic helper subdomain BF39_4929 PF01145 SPFH domain / Band 7 family BF39_4929 PF15975 Flotillin BF39_493 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF39_493 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF39_4930 PF02743 Cache domain BF39_4930 PF00672 HAMP domain BF39_4930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_4931 PF00989 PAS fold BF39_4931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4931 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF39_4931 PF17203 Single cache domain 3 BF39_4932 PF12431 Transcriptional regulator BF39_4932 PF08279 HTH domain BF39_4932 PF00072 Response regulator receiver domain BF39_4933 PF03600 Citrate transporter BF39_4937 PF04309 Glycerol-3-phosphate responsive antiterminator BF39_4938 PF17912 MalK OB fold domain BF39_4938 PF00005 ABC transporter BF39_4939 PF00528 Binding-protein-dependent transport system inner membrane component BF39_494 PF03773 Predicted permease BF39_4940 PF00528 Binding-protein-dependent transport system inner membrane component BF39_4941 PF13416 Bacterial extracellular solute-binding protein BF39_4942 PF00149 Calcineurin-like phosphoesterase BF39_4943 PF00486 Transcriptional regulatory protein, C terminal BF39_4943 PF00072 Response regulator receiver domain BF39_4944 PF00512 His Kinase A (phospho-acceptor) domain BF39_4944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4946 PF13529 Peptidase_C39 like family BF39_4947 PF00672 HAMP domain BF39_4947 PF02743 Cache domain BF39_4947 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_4948 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF39_4948 PF17203 Single cache domain 3 BF39_4948 PF00989 PAS fold BF39_4948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4949 PF00072 Response regulator receiver domain BF39_4950 PF03390 2-hydroxycarboxylate transporter family BF39_4951 PF03949 Malic enzyme, NAD binding domain BF39_4951 PF00390 Malic enzyme, N-terminal domain BF39_4953 PF00892 EamA-like transporter family BF39_4954 PF00155 Aminotransferase class I and II BF39_4954 PF00392 Bacterial regulatory proteins, gntR family BF39_4956 PF18698 Histidine kinase sensor domain BF39_4956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_4956 PF00672 HAMP domain BF39_4956 PF00512 His Kinase A (phospho-acceptor) domain BF39_4956 PF00989 PAS fold BF39_4957 PF00072 Response regulator receiver domain BF39_4957 PF00486 Transcriptional regulatory protein, C terminal BF39_4959 PF13508 Acetyltransferase (GNAT) domain BF39_4959 PF00583 Acetyltransferase (GNAT) family BF39_496 PF00535 Glycosyl transferase family 2 BF39_4960 PF02634 FdhD/NarQ family BF39_4961 PF00037 4Fe-4S binding domain BF39_4961 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF39_4961 PF00384 Molybdopterin oxidoreductase BF39_4961 PF01568 Molydopterin dinucleotide binding domain BF39_4961 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF39_4965 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF39_4965 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF39_4966 PF13520 Amino acid permease BF39_4967 PF01022 Bacterial regulatory protein, arsR family BF39_4968 PF00403 Heavy-metal-associated domain BF39_4969 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF39_4969 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BF39_4969 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BF39_497 PF03553 Na+/H+ antiporter family BF39_4972 PF07504 Fungalysin/Thermolysin Propeptide Motif BF39_4972 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF39_4972 PF03413 Peptidase propeptide and YPEB domain BF39_4972 PF01447 Thermolysin metallopeptidase, catalytic domain BF39_4976 PF04294 VanW like protein BF39_4977 PF03816 Cell envelope-related transcriptional attenuator domain BF39_4978 PF01773 Na+ dependent nucleoside transporter N-terminus BF39_4978 PF07662 Na+ dependent nucleoside transporter C-terminus BF39_4979 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_498 PF00206 Lyase BF39_498 PF10415 Fumarase C C-terminus BF39_4980 PF03471 Transporter associated domain BF39_4980 PF01595 Cyclin M transmembrane N-terminal domain BF39_4980 PF00571 CBS domain BF39_4981 PF10415 Fumarase C C-terminus BF39_4981 PF00206 Lyase BF39_4982 PF02652 L-lactate permease BF39_4983 PF01022 Bacterial regulatory protein, arsR family BF39_4984 PF08141 Small acid-soluble spore protein H family BF39_4985 PF00854 POT family BF39_4986 PF01497 Periplasmic binding protein BF39_4987 PF01032 FecCD transport family BF39_4988 PF01032 FecCD transport family BF39_4989 PF00005 ABC transporter BF39_4990 PF08241 Methyltransferase domain BF39_4991 PF00155 Aminotransferase class I and II BF39_4992 PF01370 NAD dependent epimerase/dehydratase family BF39_4993 PF00293 NUDIX domain BF39_4993 PF13344 Haloacid dehalogenase-like hydrolase BF39_4994 PF00092 von Willebrand factor type A domain BF39_4995 PF07728 AAA domain (dynein-related subfamily) BF39_4996 PF13091 PLD-like domain BF39_4996 PF13396 Phospholipase_D-nuclease N-terminal BF39_4999 PF00990 Diguanylate cyclase, GGDEF domain BF39_4999 PF00563 EAL domain BF39_4999 PF03707 Bacterial signalling protein N terminal repeat BF39_5 PF02652 L-lactate permease BF39_50 PF01565 FAD binding domain BF39_50 PF02913 FAD linked oxidases, C-terminal domain BF39_5000 PF13520 Amino acid permease BF39_5001 PF00392 Bacterial regulatory proteins, gntR family BF39_5001 PF07702 UTRA domain BF39_5002 PF00367 phosphotransferase system, EIIB BF39_5002 PF02378 Phosphotransferase system, EIIC BF39_5003 PF16657 Maltogenic Amylase, C-terminal domain BF39_5003 PF00128 Alpha amylase, catalytic domain BF39_5007 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_5009 PF01636 Phosphotransferase enzyme family BF39_5010 PF01235 Sodium:alanine symporter family BF39_5011 PF00005 ABC transporter BF39_5012 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF39_5013 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5014 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5015 PF00324 Amino acid permease BF39_502 PF01554 MatE BF39_5020 PF13280 WYL domain BF39_5020 PF08279 HTH domain BF39_5021 PF01872 RibD C-terminal domain BF39_5022 PF00672 HAMP domain BF39_5022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_5022 PF00989 PAS fold BF39_5022 PF18698 Histidine kinase sensor domain BF39_5022 PF00512 His Kinase A (phospho-acceptor) domain BF39_5023 PF00072 Response regulator receiver domain BF39_5023 PF00486 Transcriptional regulatory protein, C terminal BF39_5025 PF00916 Sulfate permease family BF39_5025 PF01740 STAS domain BF39_5026 PF00582 Universal stress protein family BF39_5028 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_5029 PF00528 Binding-protein-dependent transport system inner membrane component BF39_503 PF01554 MatE BF39_5030 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5031 PF00005 ABC transporter BF39_5031 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_5032 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_5032 PF00005 ABC transporter BF39_5033 PF07690 Major Facilitator Superfamily BF39_5034 PF01047 MarR family BF39_5035 PF07690 Major Facilitator Superfamily BF39_5036 PF07690 Major Facilitator Superfamily BF39_5037 PF00356 Bacterial regulatory proteins, lacI family BF39_5038 PF00294 pfkB family carbohydrate kinase BF39_5039 PF05025 RbsD / FucU transport protein family BF39_504 PF03575 Peptidase family S51 BF39_5040 PF00005 ABC transporter BF39_5041 PF02653 Branched-chain amino acid transport system / permease component BF39_5042 PF13407 Periplasmic binding protein domain BF39_5043 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF39_5044 PF05547 Immune inhibitor A peptidase M6 BF39_5047 PF00107 Zinc-binding dehydrogenase BF39_5047 PF08240 Alcohol dehydrogenase GroES-like domain BF39_5049 PF00882 Zinc dependent phospholipase C BF39_5050 PF03372 Endonuclease/Exonuclease/phosphatase family BF39_5055 PF02673 Bacitracin resistance protein BacA BF39_5056 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_5056 PF00672 HAMP domain BF39_5056 PF02743 Cache domain BF39_5057 PF01476 LysM domain BF39_5057 PF06725 3D domain BF39_5058 PF01381 Helix-turn-helix BF39_5060 PF04203 Sortase domain BF39_5061 PF00854 POT family BF39_5063 PF05525 Branched-chain amino acid transport protein BF39_5066 PF00324 Amino acid permease BF39_5067 PF00860 Permease family BF39_5072 PF00999 Sodium/hydrogen exchanger family BF39_5072 PF02254 TrkA-N domain BF39_5072 PF02080 TrkA-C domain BF39_5074 PF00510 Cytochrome c oxidase subunit III BF39_5075 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF39_5076 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF39_5077 PF13529 Peptidase_C39 like family BF39_5078 PF07687 Peptidase dimerisation domain BF39_5078 PF01546 Peptidase family M20/M25/M40 BF39_5079 PF11755 Protein of unknown function (DUF3311) BF39_508 PF02683 Cytochrome C biogenesis protein transmembrane region BF39_5080 PF00474 Sodium:solute symporter family BF39_5081 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_5082 PF03845 Spore germination protein BF39_5083 PF05504 Spore germination B3/ GerAC like, C-terminal BF39_5084 PF02421 Ferrous iron transport protein B BF39_5084 PF17910 FeoB cytosolic helical domain BF39_5084 PF07670 Nucleoside recognition BF39_5084 PF07664 Ferrous iron transport protein B C terminus BF39_5085 PF02421 Ferrous iron transport protein B BF39_5085 PF07664 Ferrous iron transport protein B C terminus BF39_5085 PF17910 FeoB cytosolic helical domain BF39_5085 PF07670 Nucleoside recognition BF39_5086 PF17910 FeoB cytosolic helical domain BF39_5086 PF02421 Ferrous iron transport protein B BF39_5086 PF07664 Ferrous iron transport protein B C terminus BF39_5086 PF07670 Nucleoside recognition BF39_5086 PF04023 FeoA domain BF39_5087 PF12849 PBP superfamily domain BF39_5088 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5089 PF00528 Binding-protein-dependent transport system inner membrane component BF39_509 PF00578 AhpC/TSA family BF39_5091 PF00873 AcrB/AcrD/AcrF family BF39_51 PF13556 PucR C-terminal helix-turn-helix domain BF39_51 PF17853 GGDEF-like domain BF39_51 PF05651 Putative sugar diacid recognition BF39_5118 PF00571 CBS domain BF39_5121 PF08239 Bacterial SH3 domain BF39_5121 PF00246 Zinc carboxypeptidase BF39_5122 PF03070 TENA/THI-4/PQQC family BF39_5123 PF00005 ABC transporter BF39_5124 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5125 PF09084 NMT1/THI5 like BF39_5126 PF02581 Thiamine monophosphate synthase BF39_5127 PF01266 FAD dependent oxidoreductase BF39_5128 PF02597 ThiS family BF39_5129 PF05690 Thiazole biosynthesis protein ThiG BF39_5130 PF00899 ThiF family BF39_5131 PF08543 Phosphomethylpyrimidine kinase BF39_5135 PF03814 Potassium-transporting ATPase A subunit BF39_5137 PF02669 K+-transporting ATPase, c chain BF39_5138 PF02702 Osmosensitive K+ channel His kinase sensor domain BF39_5139 PF07690 Major Facilitator Superfamily BF39_514 PF00291 Pyridoxal-phosphate dependent enzyme BF39_5140 PF01047 MarR family BF39_5143 PF00860 Permease family BF39_5148 PF00294 pfkB family carbohydrate kinase BF39_5149 PF00251 Glycosyl hydrolases family 32 N-terminal domain BF39_5149 PF08244 Glycosyl hydrolases family 32 C terminal BF39_515 PF04286 Protein of unknown function (DUF445) BF39_5150 PF00367 phosphotransferase system, EIIB BF39_5150 PF02378 Phosphotransferase system, EIIC BF39_5151 PF13407 Periplasmic binding protein domain BF39_5151 PF00356 Bacterial regulatory proteins, lacI family BF39_5153 PF00085 Thioredoxin BF39_5154 PF02600 Disulfide bond formation protein DsbB BF39_5155 PF14148 YhdB-like protein BF39_5157 PF03845 Spore germination protein BF39_5159 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_5162 PF00881 Nitroreductase family BF39_5163 PF04293 SpoVR like protein BF39_5168 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF39_5168 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_5169 PF02583 Metal-sensitive transcriptional repressor BF39_5170 PF01206 Sulfurtransferase TusA BF39_5170 PF00581 Rhodanese-like domain BF39_5171 PF00753 Metallo-beta-lactamase superfamily BF39_5171 PF00581 Rhodanese-like domain BF39_5172 PF01206 Sulfurtransferase TusA BF39_5174 PF00581 Rhodanese-like domain BF39_5176 PF13686 DsrE/DsrF/DrsH-like family BF39_5177 PF01925 Sulfite exporter TauE/SafE BF39_5179 PF03816 Cell envelope-related transcriptional attenuator domain BF39_5180 PF08240 Alcohol dehydrogenase GroES-like domain BF39_5180 PF00107 Zinc-binding dehydrogenase BF39_5181 PF02690 Na+/Pi-cotransporter BF39_5182 PF07690 Major Facilitator Superfamily BF39_5184 PF08279 HTH domain BF39_5184 PF05043 Mga helix-turn-helix domain BF39_5184 PF00874 PRD domain BF39_5184 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF39_5185 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF39_5186 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF39_5187 PF02378 Phosphotransferase system, EIIC BF39_5190 PF01476 LysM domain BF39_5190 PF06725 3D domain BF39_5191 PF12704 MacB-like periplasmic core domain BF39_5191 PF02687 FtsX-like permease family BF39_5192 PF00005 ABC transporter BF39_5194 PF09529 Integral membrane protein (intg_mem_TP0381) BF39_5197 PF05525 Branched-chain amino acid transport protein BF39_5198 PF05067 Manganese containing catalase BF39_5199 PF12652 CotJB protein BF39_520 PF00072 Response regulator receiver domain BF39_520 PF00196 Bacterial regulatory proteins, luxR family BF39_5200 PF11007 Spore coat associated protein JA (CotJA) BF39_5203 PF02735 Ku70/Ku80 beta-barrel domain BF39_5205 PF09335 SNARE associated Golgi protein BF39_521 PF13185 GAF domain BF39_521 PF13492 GAF domain BF39_521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_521 PF07730 Histidine kinase BF39_5211 PF13520 Amino acid permease BF39_5212 PF00999 Sodium/hydrogen exchanger family BF39_5214 PF01380 SIS domain BF39_5214 PF01418 Helix-turn-helix domain, rpiR family BF39_5215 PF01380 SIS domain BF39_5216 PF00367 phosphotransferase system, EIIB BF39_5216 PF02378 Phosphotransferase system, EIIC BF39_5218 PF07681 DoxX BF39_522 PF00005 ABC transporter BF39_5221 PF00892 EamA-like transporter family BF39_5222 PF01037 Lrp/AsnC ligand binding domain BF39_5224 PF00893 Small Multidrug Resistance protein BF39_5225 PF00893 Small Multidrug Resistance protein BF39_5226 PF17934 Tetracyclin repressor-like, C-terminal domain BF39_5226 PF00440 Bacterial regulatory proteins, tetR family BF39_5227 PF07690 Major Facilitator Superfamily BF39_5228 PF01638 HxlR-like helix-turn-helix BF39_5230 PF02525 Flavodoxin-like fold BF39_5231 PF12793 Sugar transport-related sRNA regulator N-term BF39_5231 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_5232 PF07690 Major Facilitator Superfamily BF39_5234 PF01965 DJ-1/PfpI family BF39_5235 PF18011 C-terminal domain found in long catalases BF39_5235 PF06628 Catalase-related immune-responsive BF39_5235 PF00199 Catalase BF39_5237 PF13520 Amino acid permease BF39_5238 PF01177 Asp/Glu/Hydantoin racemase BF39_5240 PF00171 Aldehyde dehydrogenase family BF39_5241 PF00664 ABC transporter transmembrane region BF39_5241 PF00005 ABC transporter BF39_5242 PF00664 ABC transporter transmembrane region BF39_5242 PF00005 ABC transporter BF39_5243 PF00005 ABC transporter BF39_5243 PF00664 ABC transporter transmembrane region BF39_5244 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF39_5245 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5246 PF00005 ABC transporter BF39_5247 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF39_5249 PF14398 YheC/D like ATP-grasp BF39_525 PF13091 PLD-like domain BF39_5251 PF04286 Protein of unknown function (DUF445) BF39_5252 PF06133 Control of competence regulator ComK, YlbF/YmcA BF39_5255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF39_5255 PF00205 Thiamine pyrophosphate enzyme, central domain BF39_5255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF39_5256 PF03306 Alpha-acetolactate decarboxylase BF39_5258 PF02245 Methylpurine-DNA glycosylase (MPG) BF39_526 PF00696 Amino acid kinase family BF39_5261 PF01471 Putative peptidoglycan binding domain BF39_5261 PF01476 LysM domain BF39_5261 PF01510 N-acetylmuramoyl-L-alanine amidase BF39_5263 PF04055 Radical SAM superfamily BF39_5264 PF13193 AMP-binding enzyme C-terminal domain BF39_5264 PF00501 AMP-binding enzyme BF39_5266 PF01740 STAS domain BF39_5266 PF00916 Sulfate permease family BF39_527 PF00375 Sodium:dicarboxylate symporter family BF39_5270 PF01043 SecA preprotein cross-linking domain BF39_5270 PF07516 SecA Wing and Scaffold domain BF39_5270 PF07517 SecA DEAD-like domain BF39_5271 PF14667 Polysaccharide biosynthesis C-terminal domain BF39_5271 PF01943 Polysaccharide biosynthesis protein BF39_5273 PF02368 Bacterial Ig-like domain (group 2) BF39_5273 PF13205 Bacterial Ig-like domain BF39_5273 PF00395 S-layer homology domain BF39_5274 PF00395 S-layer homology domain BF39_5276 PF03062 MBOAT, membrane-bound O-acyltransferase family BF39_5277 PF03062 MBOAT, membrane-bound O-acyltransferase family BF39_528 PF00206 Lyase BF39_528 PF10415 Fumarase C C-terminus BF39_5280 PF00378 Enoyl-CoA hydratase/isomerase BF39_5283 PF05343 M42 glutamyl aminopeptidase BF39_5284 PF01520 N-acetylmuramoyl-L-alanine amidase BF39_5284 PF00395 S-layer homology domain BF39_5286 PF11121 Protein of unknown function (DUF2639) BF39_5287 PF05544 Proline racemase BF39_5288 PF02423 Ornithine cyclodeaminase/mu-crystallin family BF39_5289 PF18593 CdiI immunity protein BF39_529 PF00390 Malic enzyme, N-terminal domain BF39_529 PF03949 Malic enzyme, NAD binding domain BF39_5293 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_5294 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5295 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5295 PF12911 N-terminal TM domain of oligopeptide transport permease C BF39_5296 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_5296 PF00005 ABC transporter BF39_5297 PF00005 ABC transporter BF39_5297 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_5298 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_5298 PF00005 ABC transporter BF39_53 PF00486 Transcriptional regulatory protein, C terminal BF39_53 PF00072 Response regulator receiver domain BF39_530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_5304 PF00083 Sugar (and other) transporter BF39_5305 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF39_5305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_5306 PF08279 HTH domain BF39_5306 PF00072 Response regulator receiver domain BF39_5306 PF12431 Transcriptional regulator BF39_5307 PF03401 Tripartite tricarboxylate transporter family receptor BF39_5308 PF02342 TerD domain BF39_531 PF00072 Response regulator receiver domain BF39_531 PF08664 YcbB domain BF39_5312 PF06445 GyrI-like small molecule binding domain BF39_5312 PF13411 MerR HTH family regulatory protein BF39_5315 PF03796 DnaB-like helicase C terminal domain BF39_5315 PF00772 DnaB-like helicase N terminal domain BF39_5320 PF01925 Sulfite exporter TauE/SafE BF39_5323 PF07690 Major Facilitator Superfamily BF39_533 PF04434 SWIM zinc finger BF39_533 PF00176 SNF2 family N-terminal domain BF39_533 PF00271 Helicase conserved C-terminal domain BF39_5333 PF07993 Male sterility protein BF39_5333 PF00550 Phosphopantetheine attachment site BF39_5334 PF18665 Tetracyclin repressor-like, C-terminal domain BF39_5334 PF00440 Bacterial regulatory proteins, tetR family BF39_5338 PF01066 CDP-alcohol phosphatidyltransferase BF39_5342 PF02733 Dak1 domain BF39_5344 PF02733 Dak1 domain BF39_5345 PF02525 Flavodoxin-like fold BF39_5346 PF02082 Transcriptional regulator BF39_535 PF03590 Aspartate-ammonia ligase BF39_5352 PF00672 HAMP domain BF39_5352 PF01966 HD domain BF39_5357 PF00395 S-layer homology domain BF39_5361 PF11181 Heat induced stress protein YflT BF39_5362 PF05532 CsbD-like BF39_5365 PF01740 STAS domain BF39_5366 PF13581 Histidine kinase-like ATPase domain BF39_5367 PF04539 Sigma-70 region 3 BF39_5367 PF04545 Sigma-70, region 4 BF39_5367 PF04542 Sigma-70 region 2 BF39_5369 PF13426 PAS domain BF39_5369 PF07228 Stage II sporulation protein E (SpoIIE) BF39_5370 PF03705 CheR methyltransferase, all-alpha domain BF39_5370 PF01739 CheR methyltransferase, SAM binding domain BF39_5371 PF01627 Hpt domain BF39_5371 PF00512 His Kinase A (phospho-acceptor) domain BF39_5371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_5371 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF39_5371 PF00072 Response regulator receiver domain BF39_5376 PF01906 Putative heavy-metal-binding BF39_5378 PF00107 Zinc-binding dehydrogenase BF39_5378 PF08240 Alcohol dehydrogenase GroES-like domain BF39_5379 PF11121 Protein of unknown function (DUF2639) BF39_5382 PF00149 Calcineurin-like phosphoesterase BF39_5383 PF13514 AAA domain BF39_5384 PF07282 Putative transposase DNA-binding domain BF39_5384 PF12323 Helix-turn-helix domain BF39_5384 PF01385 Probable transposase BF39_5386 PF01966 HD domain BF39_5386 PF01336 OB-fold nucleic acid binding domain BF39_5387 PF00440 Bacterial regulatory proteins, tetR family BF39_5388 PF07690 Major Facilitator Superfamily BF39_5389 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_539 PF00696 Amino acid kinase family BF39_539 PF13840 ACT domain BF39_5390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_5391 PF18801 response regulator aspartate phosphatase H, N terminal BF39_5393 PF00561 alpha/beta hydrolase fold BF39_5393 PF08386 TAP-like protein BF39_5397 PF04309 Glycerol-3-phosphate responsive antiterminator BF39_5398 PF00230 Major intrinsic protein BF39_5399 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_5399 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_54 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_54 PF18698 Histidine kinase sensor domain BF39_54 PF00512 His Kinase A (phospho-acceptor) domain BF39_54 PF00989 PAS fold BF39_54 PF00672 HAMP domain BF39_5400 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BF39_5400 PF01266 FAD dependent oxidoreductase BF39_5403 PF08281 Sigma-70, region 4 BF39_5403 PF04542 Sigma-70 region 2 BF39_5408 PF07690 Major Facilitator Superfamily BF39_5409 PF07690 Major Facilitator Superfamily BF39_5411 PF13538 UvrD-like helicase C-terminal domain BF39_5415 PF01047 MarR family BF39_5416 PF12732 YtxH-like protein BF39_5417 PF01230 HIT domain BF39_5418 PF00005 ABC transporter BF39_5419 PF05975 Bacterial ABC transporter protein EcsB BF39_542 PF13761 Domain of unknown function (DUF4166) BF39_5420 PF12787 EcsC protein family BF39_5422 PF00440 Bacterial regulatory proteins, tetR family BF39_5422 PF17934 Tetracyclin repressor-like, C-terminal domain BF39_5424 PF03703 Bacterial PH domain BF39_5426 PF03703 Bacterial PH domain BF39_543 PF14158 YndJ-like protein BF39_5436 PF03703 Bacterial PH domain BF39_5437 PF03703 Bacterial PH domain BF39_5438 PF03992 Antibiotic biosynthesis monooxygenase BF39_5439 PF00905 Penicillin binding protein transpeptidase domain BF39_5439 PF00912 Transglycosylase BF39_544 PF00293 NUDIX domain BF39_5440 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF39_5447 PF03965 Penicillinase repressor BF39_5449 PF17932 Tetracyclin repressor-like, C-terminal domain BF39_5449 PF00440 Bacterial regulatory proteins, tetR family BF39_545 PF02368 Bacterial Ig-like domain (group 2) BF39_545 PF00395 S-layer homology domain BF39_545 PF13205 Bacterial Ig-like domain BF39_5455 PF00356 Bacterial regulatory proteins, lacI family BF39_5456 PF14149 YhfH-like protein BF39_5457 PF12706 Beta-lactamase superfamily domain BF39_5458 PF03099 Biotin/lipoate A/B protein ligase family BF39_5458 PF10437 Bacterial lipoate protein ligase C-terminus BF39_5460 PF13193 AMP-binding enzyme C-terminal domain BF39_5460 PF00501 AMP-binding enzyme BF39_5462 PF01520 N-acetylmuramoyl-L-alanine amidase BF39_5462 PF00395 S-layer homology domain BF39_5463 PF05593 RHS Repeat BF39_5466 PF05593 RHS Repeat BF39_547 PF07690 Major Facilitator Superfamily BF39_5471 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF39_5473 PF00149 Calcineurin-like phosphoesterase BF39_5474 PF01966 HD domain BF39_5476 PF08281 Sigma-70, region 4 BF39_5476 PF04542 Sigma-70 region 2 BF39_5477 PF06445 GyrI-like small molecule binding domain BF39_5477 PF12833 Helix-turn-helix domain BF39_5480 PF00512 His Kinase A (phospho-acceptor) domain BF39_5480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_5481 PF00072 Response regulator receiver domain BF39_5481 PF00486 Transcriptional regulatory protein, C terminal BF39_5486 PF01435 Peptidase family M48 BF39_5486 PF16491 CAAX prenyl protease N-terminal, five membrane helices BF39_5487 PF02743 Cache domain BF39_5487 PF00672 HAMP domain BF39_5487 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_5488 PF00892 EamA-like transporter family BF39_5489 PF03424 Carbohydrate binding domain (family 17/28) BF39_5489 PF00395 S-layer homology domain BF39_5489 PF00150 Cellulase (glycosyl hydrolase family 5) BF39_5491 PF00395 S-layer homology domain BF39_5492 PF01274 Malate synthase BF39_5493 PF00463 Isocitrate lyase family BF39_5495 PF00313 'Cold-shock' DNA-binding domain BF39_5498 PF06338 ComK protein BF39_5499 PF09335 SNARE associated Golgi protein BF39_55 PF00392 Bacterial regulatory proteins, gntR family BF39_55 PF07729 FCD domain BF39_550 PF02554 Carbon starvation protein CstA BF39_5500 PF10502 Signal peptidase, peptidase S26 BF39_5501 PF13361 UvrD-like helicase C-terminal domain BF39_5501 PF12705 PD-(D/E)XK nuclease superfamily BF39_5502 PF13361 UvrD-like helicase C-terminal domain BF39_5502 PF12705 PD-(D/E)XK nuclease superfamily BF39_5503 PF13361 UvrD-like helicase C-terminal domain BF39_5503 PF00580 UvrD/REP helicase N-terminal domain BF39_5503 PF12705 PD-(D/E)XK nuclease superfamily BF39_5505 PF10676 Spore germination protein gerPA/gerPF BF39_5506 PF10970 Spore germination protein GerPE BF39_5508 PF10737 Spore germination protein GerPC BF39_5509 PF10803 Spore germination GerPB BF39_551 PF03976 Polyphosphate kinase 2 (PPK2) BF39_5510 PF10676 Spore germination protein gerPA/gerPF BF39_5511 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF39_5513 PF00202 Aminotransferase class-III BF39_5514 PF07457 Protein of unknown function (DUF1516) BF39_5516 PF13537 Glutamine amidotransferase domain BF39_5516 PF00733 Asparagine synthase BF39_5518 PF06628 Catalase-related immune-responsive BF39_5518 PF00199 Catalase BF39_5519 PF00909 Ammonium Transporter Family BF39_552 PF07690 Major Facilitator Superfamily BF39_5520 PF00128 Alpha amylase, catalytic domain BF39_5522 PF04461 Protein of unknown function (DUF520) BF39_5523 PF13509 S1 domain BF39_5523 PF17783 CvfB-like winged helix domain BF39_5525 PF00639 PPIC-type PPIASE domain BF39_5527 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_5527 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_5528 PF12758 Protein of unknown function (DUF3813) BF39_553 PF07690 Major Facilitator Superfamily BF39_5531 PF14168 YjzC-like protein BF39_5532 PF07724 AAA domain (Cdc48 subfamily) BF39_5532 PF00004 ATPase family associated with various cellular activities (AAA) BF39_5532 PF10431 C-terminal, D2-small domain, of ClpB protein BF39_5532 PF02861 Clp amino terminal domain, pathogenicity island component BF39_5532 PF17871 AAA lid domain BF39_5536 PF10815 ComZ BF39_5537 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF39_5537 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF39_5538 PF00109 Beta-ketoacyl synthase, N-terminal domain BF39_5538 PF02801 Beta-ketoacyl synthase, C-terminal domain BF39_5539 PF10026 Predicted Zn-dependent protease (DUF2268) BF39_554 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF39_554 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF39_5540 PF12227 Protein of unknown function (DUF3603) BF39_5541 PF00579 tRNA synthetases class I (W and Y) BF39_5543 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_5544 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5545 PF12911 N-terminal TM domain of oligopeptide transport permease C BF39_5545 PF00528 Binding-protein-dependent transport system inner membrane component BF39_5546 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_5546 PF00005 ABC transporter BF39_5547 PF00005 ABC transporter BF39_5547 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF39_5548 PF01554 MatE BF39_5549 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_5551 PF03960 ArsC family BF39_5552 PF03741 Integral membrane protein TerC family BF39_5553 PF05389 Negative regulator of genetic competence (MecA) BF39_5554 PF13091 PLD-like domain BF39_5554 PF13396 Phospholipase_D-nuclease N-terminal BF39_5556 PF01432 Peptidase family M3 BF39_5556 PF08439 Oligopeptidase F BF39_5559 PF01152 Bacterial-like globin BF39_556 PF01926 50S ribosome-binding GTPase BF39_556 PF16360 GTP-binding GTPase Middle Region BF39_556 PF13167 GTP-binding GTPase N-terminal BF39_5560 PF01928 CYTH domain BF39_5562 PF04607 Region found in RelA / SpoT proteins BF39_5563 PF01513 ATP-NAD kinase BF39_5564 PF00849 RNA pseudouridylate synthase BF39_5566 PF00149 Calcineurin-like phosphoesterase BF39_5567 PF01098 Cell cycle protein BF39_5568 PF01098 Cell cycle protein BF39_5569 PF00535 Glycosyl transferase family 2 BF39_5570 PF08241 Methyltransferase domain BF39_5571 PF05711 Macrocin-O-methyltransferase (TylF) BF39_5573 PF13181 Tetratricopeptide repeat BF39_5573 PF00535 Glycosyl transferase family 2 BF39_5577 PF00483 Nucleotidyl transferase BF39_5578 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF39_5579 PF16363 GDP-mannose 4,6 dehydratase BF39_558 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_5580 PF04321 RmlD substrate binding domain BF39_5584 PF07098 Protein of unknown function (DUF1360) BF39_5587 PF00580 UvrD/REP helicase N-terminal domain BF39_5587 PF13361 UvrD-like helicase C-terminal domain BF39_5588 PF13673 Acetyltransferase (GNAT) domain BF39_559 PF07690 Major Facilitator Superfamily BF39_5590 PF00756 Putative esterase BF39_5593 PF02368 Bacterial Ig-like domain (group 2) BF39_5594 PF00474 Sodium:solute symporter family BF39_5596 PF00117 Glutamine amidotransferase class-I BF39_5596 PF00591 Glycosyl transferase family, a/b domain BF39_5596 PF02885 Glycosyl transferase family, helical bundle domain BF39_5597 PF00591 Glycosyl transferase family, a/b domain BF39_5597 PF02885 Glycosyl transferase family, helical bundle domain BF39_5598 PF00218 Indole-3-glycerol phosphate synthase BF39_5599 PF03323 Bacillus/Clostridium GerA spore germination protein BF39_56 PF02754 Cysteine-rich domain BF39_560 PF00291 Pyridoxal-phosphate dependent enzyme BF39_5600 PF05504 Spore germination B3/ GerAC like, C-terminal BF39_5602 PF07691 PA14 domain BF39_5602 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 BF39_5602 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 BF39_5602 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain BF39_5603 PF01022 Bacterial regulatory protein, arsR family BF39_5607 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BF39_5607 PF09156 Anthrax toxin lethal factor, middle domain BF39_5612 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF39_5612 PF18277 AbrB C-terminal domain BF39_5614 PF00589 Phage integrase family BF39_5614 PF02899 Phage integrase, N-terminal SAM-like domain BF39_5621 PF14436 Bacterial EndoU nuclease BF39_5621 PF04740 LXG domain of WXG superfamily BF39_5623 PF00665 Integrase core domain BF39_5623 PF13276 HTH-like domain BF39_5623 PF13333 Integrase core domain BF39_5624 PF13276 HTH-like domain BF39_5624 PF00665 Integrase core domain BF39_5624 PF13333 Integrase core domain BF39_5627 PF00665 Integrase core domain BF39_5627 PF13333 Integrase core domain BF39_5627 PF13276 HTH-like domain BF39_5629 PF01609 Transposase DDE domain BF39_563 PF14667 Polysaccharide biosynthesis C-terminal domain BF39_563 PF01943 Polysaccharide biosynthesis protein BF39_5630 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF39_5632 PF00589 Phage integrase family BF39_5637 PF18801 response regulator aspartate phosphatase H, N terminal BF39_5639 PF17209 Hfq protein BF39_564 PF00209 Sodium:neurotransmitter symporter family BF39_5640 PF01022 Bacterial regulatory protein, arsR family BF39_5641 PF02600 Disulfide bond formation protein DsbB BF39_5644 PF00565 Staphylococcal nuclease homologue BF39_5646 PF01131 DNA topoisomerase BF39_5646 PF01751 Toprim domain BF39_5646 PF13342 C-terminal repeat of topoisomerase BF39_565 PF00457 Glycosyl hydrolases family 11 BF39_565 PF03422 Carbohydrate binding module (family 6) BF39_565 PF01522 Polysaccharide deacetylase BF39_5652 PF08378 Nuclease-related domain BF39_5660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF39_567 PF04239 Protein of unknown function (DUF421) BF39_5681 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF39_5695 PF01609 Transposase DDE domain BF39_5696 PF01609 Transposase DDE domain BF39_57 PF02589 LUD domain BF39_57 PF13183 4Fe-4S dicluster domain BF39_57 PF11870 Domain of unknown function (DUF3390) BF39_570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF39_570 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF39_5701 PF01609 Transposase DDE domain BF39_5702 PF01609 Transposase DDE domain BF39_5703 PF01609 Transposase DDE domain BF39_5708 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BF39_5708 PF09397 Ftsk gamma domain BF39_5708 PF01580 FtsK/SpoIIIE family BF39_5708 PF17854 FtsK alpha domain BF39_5727 PF00437 Type II/IV secretion system protein BF39_574 PF01625 Peptide methionine sulfoxide reductase BF39_5754 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) BF39_5757 PF04235 Protein of unknown function (DUF418) BF39_576 PF01063 Amino-transferase class IV BF39_5763 PF00395 S-layer homology domain BF39_5764 PF01569 PAP2 superfamily BF39_5767 PF00535 Glycosyl transferase family 2 BF39_5768 PF00483 Nucleotidyl transferase BF39_5769 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF39_5769 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF39_5769 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF39_577 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF39_577 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF39_577 PF00205 Thiamine pyrophosphate enzyme, central domain BF39_5770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF39_5770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF39_5770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF39_5776 PF00665 Integrase core domain BF39_5776 PF13276 HTH-like domain BF39_5776 PF13333 Integrase core domain BF39_578 PF10369 Small subunit of acetolactate synthase BF39_5784 PF03497 Anthrax toxin LF subunit BF39_5784 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain BF39_5785 PF00156 Phosphoribosyl transferase domain BF39_5786 PF00156 Phosphoribosyl transferase domain BF39_579 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF39_579 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF39_5791 PF02660 Glycerol-3-phosphate acyltransferase BF39_5792 PF05043 Mga helix-turn-helix domain BF39_5792 PF00874 PRD domain BF39_5792 PF08279 HTH domain BF39_5793 PF09385 Histidine kinase N terminal BF39_5797 PF13700 Domain of unknown function (DUF4158) BF39_5797 PF01526 Tn3 transposase DDE domain BF39_5798 PF02796 Helix-turn-helix domain of resolvase BF39_5798 PF00239 Resolvase, N terminal domain BF39_5799 PF08708 Primase C terminal 1 (PriCT-1) BF39_58 PF02589 LUD domain BF39_580 PF00920 Dehydratase family BF39_5804 PF17362 Family of unknown function BF39_5807 PF17631 Family of unknown function (DUF5512) BF39_581 PF00291 Pyridoxal-phosphate dependent enzyme BF39_581 PF00585 C-terminal regulatory domain of Threonine dehydratase BF39_5816 PF00437 Type II/IV secretion system protein BF39_5822 PF04956 TrbC/VIRB2 family BF39_5825 PF12696 TraM recognition site of TraD and TraG BF39_583 PF09587 Bacterial capsule synthesis protein PGA_cap BF39_5832 PF00877 NlpC/P60 family BF39_5834 PF17632 Family of unknown function (DUF5513) BF39_5840 PF17633 Family of unknown function (DUF5514) BF39_5841 PF17630 Family of unknown function (DUF5511) BF39_5842 PF18840 Large polyvalent protein associated domain 25 BF39_5845 PF13154 Protein of unknown function (DUF3991) BF39_5846 PF01751 Toprim domain BF39_5846 PF01131 DNA topoisomerase BF39_5847 PF01131 DNA topoisomerase BF39_5847 PF01751 Toprim domain BF39_5853 PF17443 Uncharacterized protein pXO2-72 BF39_5857 PF00817 impB/mucB/samB family BF39_5857 PF11799 impB/mucB/samB family C-terminal domain BF39_5857 PF11798 IMS family HHH motif BF39_5858 PF13152 Protein of unknown function (DUF3967) BF39_5858 PF13411 MerR HTH family regulatory protein BF39_586 PF07690 Major Facilitator Superfamily BF39_5860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_5864 PF08280 M protein trans-acting positive regulator (MGA) HTH domain BF39_5864 PF00874 PRD domain BF39_5864 PF05043 Mga helix-turn-helix domain BF39_5866 PF01810 LysE type translocator BF39_5869 PF00874 PRD domain BF39_5869 PF08279 HTH domain BF39_5869 PF05043 Mga helix-turn-helix domain BF39_587 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BF39_5870 PF05043 Mga helix-turn-helix domain BF39_5870 PF00874 PRD domain BF39_5870 PF08279 HTH domain BF39_5871 PF09385 Histidine kinase N terminal BF39_5874 PF10502 Signal peptidase, peptidase S26 BF39_5876 PF01609 Transposase DDE domain BF39_5877 PF01022 Bacterial regulatory protein, arsR family BF39_5879 PF08245 Mur ligase middle domain BF39_5880 PF14102 Capsule biosynthesis CapC BF39_5881 PF09587 Bacterial capsule synthesis protein PGA_cap BF39_5888 PF01569 PAP2 superfamily BF39_5889 PF01569 PAP2 superfamily BF39_589 PF00072 Response regulator receiver domain BF39_589 PF04397 LytTr DNA-binding domain BF39_5890 PF01609 Transposase DDE domain BF39_5891 PF01609 Transposase DDE domain BF39_5892 PF00440 Bacterial regulatory proteins, tetR family BF39_5893 PF04463 Protein of unknown function (DUF523) BF39_5894 PF02517 CPBP intramembrane metalloprotease BF39_5896 PF01906 Putative heavy-metal-binding BF39_59 PF06750 Bacterial Peptidase A24 N-terminal domain BF39_59 PF01478 Type IV leader peptidase family BF39_590 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BF39_590 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BF39_5900 PF13333 Integrase core domain BF39_5900 PF00665 Integrase core domain BF39_5900 PF13276 HTH-like domain BF39_5901 PF01520 N-acetylmuramoyl-L-alanine amidase BF39_5901 PF00395 S-layer homology domain BF39_5904 PF13614 AAA domain BF39_594 PF01979 Amidohydrolase family BF39_595 PF12146 Serine aminopeptidase, S33 BF39_595 PF13026 Protein of unknown function (DUF3887) BF39_596 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_6 PF10042 Uncharacterized conserved protein (DUF2278) BF39_601 PF13186 Iron-sulfur cluster-binding domain BF39_601 PF04055 Radical SAM superfamily BF39_602 PF13302 Acetyltransferase (GNAT) domain BF39_603 PF00486 Transcriptional regulatory protein, C terminal BF39_603 PF00072 Response regulator receiver domain BF39_605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_605 PF00512 His Kinase A (phospho-acceptor) domain BF39_607 PF01566 Natural resistance-associated macrophage protein BF39_61 PF01226 Formate/nitrite transporter BF39_610 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF39_610 PF02558 Ketopantoate reductase PanE/ApbA BF39_612 PF13520 Amino acid permease BF39_613 PF13520 Amino acid permease BF39_615 PF05791 Bacillus haemolytic enterotoxin (HBL) BF39_616 PF05791 Bacillus haemolytic enterotoxin (HBL) BF39_618 PF04198 Putative sugar-binding domain BF39_619 PF01791 DeoC/LacD family aldolase BF39_62 PF03741 Integral membrane protein TerC family BF39_620 PF01773 Na+ dependent nucleoside transporter N-terminus BF39_620 PF07662 Na+ dependent nucleoside transporter C-terminus BF39_621 PF02885 Glycosyl transferase family, helical bundle domain BF39_621 PF00591 Glycosyl transferase family, a/b domain BF39_621 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF39_622 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF39_623 PF05979 Bacterial protein of unknown function (DUF896) BF39_627 PF05195 Aminopeptidase P, N-terminal domain BF39_627 PF00557 Metallopeptidase family M24 BF39_628 PF07731 Multicopper oxidase BF39_628 PF07732 Multicopper oxidase BF39_629 PF07732 Multicopper oxidase BF39_629 PF00394 Multicopper oxidase BF39_629 PF07731 Multicopper oxidase BF39_630 PF01551 Peptidase family M23 BF39_635 PF02525 Flavodoxin-like fold BF39_636 PF05525 Branched-chain amino acid transport protein BF39_637 PF05525 Branched-chain amino acid transport protein BF39_639 PF04234 CopC domain BF39_639 PF13115 YtkA-like BF39_639 PF05425 Copper resistance protein D BF39_640 PF07987 Domain of unkown function (DUF1775) BF39_642 PF00892 EamA-like transporter family BF39_643 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_643 PF03466 LysR substrate binding domain BF39_644 PF02082 Transcriptional regulator BF39_645 PF01323 DSBA-like thioredoxin domain BF39_646 PF00881 Nitroreductase family BF39_648 PF01425 Amidase BF39_649 PF01594 AI-2E family transporter BF39_65 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF39_650 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF39_650 PF00056 lactate/malate dehydrogenase, NAD binding domain BF39_651 PF01593 Flavin containing amine oxidoreductase BF39_652 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF39_652 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF39_655 PF00501 AMP-binding enzyme BF39_655 PF13193 AMP-binding enzyme C-terminal domain BF39_656 PF01575 MaoC like domain BF39_657 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF39_657 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF39_659 PF12399 Branched-chain amino acid ATP-binding cassette transporter BF39_659 PF00005 ABC transporter BF39_66 PF01575 MaoC like domain BF39_660 PF00005 ABC transporter BF39_661 PF02653 Branched-chain amino acid transport system / permease component BF39_663 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF39_663 PF03466 LysR substrate binding domain BF39_667 PF01047 MarR family BF39_669 PF01654 Cytochrome bd terminal oxidase subunit I BF39_670 PF02322 Cytochrome bd terminal oxidase subunit II BF39_671 PF00005 ABC transporter BF39_671 PF00664 ABC transporter transmembrane region BF39_672 PF00005 ABC transporter BF39_672 PF00664 ABC transporter transmembrane region BF39_675 PF02016 LD-carboxypeptidase N-terminal domain BF39_675 PF17676 LD-carboxypeptidase C-terminal domain BF39_676 PF00768 D-alanyl-D-alanine carboxypeptidase BF39_676 PF07943 Penicillin-binding protein 5, C-terminal domain BF39_678 PF00877 NlpC/P60 family BF39_678 PF01476 LysM domain BF39_680 PF00664 ABC transporter transmembrane region BF39_680 PF00005 ABC transporter BF39_681 PF00664 ABC transporter transmembrane region BF39_681 PF00005 ABC transporter BF39_682 PF00072 Response regulator receiver domain BF39_682 PF00486 Transcriptional regulatory protein, C terminal BF39_683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_683 PF00512 His Kinase A (phospho-acceptor) domain BF39_683 PF16736 Single Cache-like BF39_683 PF00989 PAS fold BF39_685 PF00106 short chain dehydrogenase BF39_686 PF04439 Streptomycin adenylyltransferase BF39_687 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF39_687 PF01522 Polysaccharide deacetylase BF39_691 PF03447 Homoserine dehydrogenase, NAD binding domain BF39_691 PF01842 ACT domain BF39_691 PF00742 Homoserine dehydrogenase BF39_692 PF00291 Pyridoxal-phosphate dependent enzyme BF39_693 PF08544 GHMP kinases C terminal BF39_693 PF00288 GHMP kinases N terminal domain BF39_696 PF03816 Cell envelope-related transcriptional attenuator domain BF39_698 PF00486 Transcriptional regulatory protein, C terminal BF39_698 PF00072 Response regulator receiver domain BF39_699 PF16736 Single Cache-like BF39_699 PF00512 His Kinase A (phospho-acceptor) domain BF39_699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_699 PF00989 PAS fold BF39_700 PF01522 Polysaccharide deacetylase BF39_702 PF02308 MgtC family BF39_703 PF00583 Acetyltransferase (GNAT) family BF39_704 PF04183 IucA / IucC family BF39_704 PF06276 Ferric iron reductase FhuF-like transporter BF39_705 PF06276 Ferric iron reductase FhuF-like transporter BF39_705 PF04183 IucA / IucC family BF39_706 PF00501 AMP-binding enzyme BF39_706 PF13193 AMP-binding enzyme C-terminal domain BF39_709 PF01261 Xylose isomerase-like TIM barrel BF39_71 PF00561 alpha/beta hydrolase fold BF39_710 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF39_711 PF07690 Major Facilitator Superfamily BF39_712 PF07690 Major Facilitator Superfamily BF39_713 PF07690 Major Facilitator Superfamily BF39_714 PF01810 LysE type translocator BF39_716 PF01734 Patatin-like phospholipase BF39_721 PF13344 Haloacid dehalogenase-like hydrolase BF39_721 PF00293 NUDIX domain BF39_722 PF02540 NAD synthase BF39_723 PF02687 FtsX-like permease family BF39_724 PF02687 FtsX-like permease family BF39_725 PF18277 AbrB C-terminal domain BF39_725 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF39_726 PF00082 Subtilase family BF39_727 PF01022 Bacterial regulatory protein, arsR family BF39_728 PF00248 Aldo/keto reductase family BF39_729 PF07690 Major Facilitator Superfamily BF39_73 PF02386 Cation transport protein BF39_733 PF03193 RsgA GTPase BF39_734 PF02743 Cache domain BF39_734 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF39_734 PF00672 HAMP domain BF39_738 PF00210 Ferritin-like domain BF39_741 PF00296 Luciferase-like monooxygenase BF39_743 PF01593 Flavin containing amine oxidoreductase BF39_745 PF00248 Aldo/keto reductase family BF39_746 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF39_746 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF39_747 PF00583 Acetyltransferase (GNAT) family BF39_757 PF01297 Zinc-uptake complex component A periplasmic BF39_757 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF39_759 PF13460 NAD(P)H-binding BF39_760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF39_761 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF39_761 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF39_763 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF39_764 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_766 PF00300 Histidine phosphatase superfamily (branch 1) BF39_768 PF08757 CotH kinase protein BF39_769 PF00293 NUDIX domain BF39_770 PF09335 SNARE associated Golgi protein BF39_771 PF14667 Polysaccharide biosynthesis C-terminal domain BF39_771 PF01943 Polysaccharide biosynthesis protein BF39_773 PF03773 Predicted permease BF39_774 PF09323 Domain of unknown function (DUF1980) BF39_775 PF03061 Thioesterase superfamily BF39_776 PF13396 Phospholipase_D-nuclease N-terminal BF39_776 PF13091 PLD-like domain BF39_779 PF13460 NAD(P)H-binding BF39_78 PF08402 TOBE domain BF39_78 PF00005 ABC transporter BF39_780 PF04306 Protein of unknown function (DUF456) BF39_781 PF00571 CBS domain BF39_781 PF03471 Transporter associated domain BF39_781 PF01595 Cyclin M transmembrane N-terminal domain BF39_784 PF05525 Branched-chain amino acid transport protein BF39_785 PF01588 Putative tRNA binding domain BF39_789 PF07454 Stage II sporulation protein P (SpoIIP) BF39_79 PF00005 ABC transporter BF39_791 PF02557 D-alanyl-D-alanine carboxypeptidase BF39_793 PF01425 Amidase BF39_794 PF07690 Major Facilitator Superfamily BF39_796 PF01145 SPFH domain / Band 7 family BF39_797 PF00300 Histidine phosphatase superfamily (branch 1) BF39_800 PF00842 Alanine racemase, C-terminal domain BF39_800 PF01168 Alanine racemase, N-terminal domain BF39_804 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF39_805 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF39_805 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF39_806 PF00155 Aminotransferase class I and II BF39_806 PF00392 Bacterial regulatory proteins, gntR family BF39_81 PF00528 Binding-protein-dependent transport system inner membrane component BF39_812 PF00583 Acetyltransferase (GNAT) family BF39_82 PF13419 Haloacid dehalogenase-like hydrolase BF39_821 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF39_826 PF01209 ubiE/COQ5 methyltransferase family BF39_827 PF01268 Formate--tetrahydrofolate ligase BF39_829 PF00271 Helicase conserved C-terminal domain BF39_829 PF00270 DEAD/DEAH box helicase BF39_83 PF00266 Aminotransferase class-V BF39_830 PF01261 Xylose isomerase-like TIM barrel BF39_831 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF39_833 PF08240 Alcohol dehydrogenase GroES-like domain BF39_833 PF00107 Zinc-binding dehydrogenase BF39_834 PF04542 Sigma-70 region 2 BF39_834 PF08281 Sigma-70, region 4 BF39_839 PF00255 Glutathione peroxidase BF39_840 PF01841 Transglutaminase-like superfamily BF39_840 PF13559 Domain of unknown function (DUF4129) BF39_840 PF11992 Domain of unknown function (DUF3488) BF39_841 PF01882 Protein of unknown function DUF58 BF39_842 PF07726 ATPase family associated with various cellular activities (AAA) BF39_842 PF17863 AAA lid domain BF39_845 PF01568 Molydopterin dinucleotide binding domain BF39_845 PF14710 Respiratory nitrate reductase alpha N-terminal BF39_845 PF00384 Molybdopterin oxidoreductase BF39_846 PF14711 Respiratory nitrate reductase beta C-terminal BF39_846 PF13247 4Fe-4S dicluster domain BF39_847 PF02613 Nitrate reductase delta subunit BF39_848 PF02665 Nitrate reductase gamma subunit BF39_849 PF00155 Aminotransferase class I and II BF39_849 PF00392 Bacterial regulatory proteins, gntR family BF39_85 PF08220 DeoR-like helix-turn-helix domain BF39_85 PF00455 DeoR C terminal sensor domain BF39_850 PF00005 ABC transporter BF39_852 PF00027 Cyclic nucleotide-binding domain BF39_852 PF00325 Bacterial regulatory proteins, crp family BF39_853 PF04055 Radical SAM superfamily BF39_853 PF06463 Molybdenum Cofactor Synthesis C BF39_854 PF00899 ThiF family BF39_855 PF00994 Probable molybdopterin binding domain BF39_855 PF03453 MoeA N-terminal region (domain I and II) BF39_855 PF03454 MoeA C-terminal region (domain IV) BF39_856 PF02391 MoaE protein BF39_858 PF07690 Major Facilitator Superfamily BF39_862 PF01903 CbiX BF39_863 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF39_864 PF00355 Rieske [2Fe-2S] domain BF39_865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF39_865 PF18267 Rubredoxin NAD+ reductase C-terminal domain BF39_865 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF39_865 PF04324 BFD-like [2Fe-2S] binding domain BF39_865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF39_866 PF04405 Domain of Unknown function (DUF542) BF39_866 PF01814 Hemerythrin HHE cation binding domain BF39_873 PF04232 Stage V sporulation protein S (SpoVS) BF39_876 PF01510 N-acetylmuramoyl-L-alanine amidase BF39_879 PF01966 HD domain BF39_880 PF16326 ABC transporter C-terminal domain BF39_880 PF00005 ABC transporter BF39_880 PF12848 ABC transporter BF39_883 PF00436 Single-strand binding protein family BF39_884 PF00440 Bacterial regulatory proteins, tetR family BF39_885 PF01494 FAD binding domain BF39_886 PF01494 FAD binding domain BF39_887 PF13769 Virulence factor BF39_887 PF08712 Scaffold protein Nfu/NifU N terminal BF39_889 PF06491 Disulphide isomerase BF39_89 PF00395 S-layer homology domain BF39_89 PF01520 N-acetylmuramoyl-L-alanine amidase BF39_890 PF04445 Putative SAM-dependent methyltransferase BF39_891 PF03485 Arginyl tRNA synthetase N terminal domain BF39_891 PF05746 DALR anticodon binding domain BF39_891 PF00750 tRNA synthetases class I (R) BF39_897 PF08264 Anticodon-binding domain of tRNA BF39_897 PF00133 tRNA synthetases class I (I, L, M and V) BF39_90 PF00596 Class II Aldolase and Adducin N-terminal domain BF39_900 PF01225 Mur ligase family, catalytic domain BF39_900 PF08245 Mur ligase middle domain BF39_900 PF02875 Mur ligase family, glutamate ligase domain BF39_901 PF00152 tRNA synthetases class II (D, K and N) BF39_901 PF01336 OB-fold nucleic acid binding domain BF39_905 PF12538 DNA transporter BF39_905 PF01580 FtsK/SpoIIIE family BF39_91 PF00596 Class II Aldolase and Adducin N-terminal domain BF39_924 PF02595 Glycerate kinase family BF39_925 PF00939 Sodium:sulfate symporter transmembrane region BF39_926 PF00486 Transcriptional regulatory protein, C terminal BF39_926 PF00072 Response regulator receiver domain BF39_927 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_927 PF00672 HAMP domain BF39_927 PF00512 His Kinase A (phospho-acceptor) domain BF39_93 PF04748 Divergent polysaccharide deacetylase BF39_930 PF00209 Sodium:neurotransmitter symporter family BF39_933 PF10997 Alternate to MurJ BF39_937 PF00465 Iron-containing alcohol dehydrogenase BF39_938 PF01177 Asp/Glu/Hydantoin racemase BF39_939 PF01980 tRNA-methyltransferase O BF39_94 PF09388 Spo0E like sporulation regulatory protein BF39_940 PF00583 Acetyltransferase (GNAT) family BF39_944 PF00005 ABC transporter BF39_945 PF05975 Bacterial ABC transporter protein EcsB BF39_946 PF14005 YpjP-like protein BF39_947 PF13419 Haloacid dehalogenase-like hydrolase BF39_95 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF39_95 PF00512 His Kinase A (phospho-acceptor) domain BF39_95 PF02743 Cache domain BF39_951 PF00144 Beta-lactamase BF39_951 PF07930 D-aminopeptidase, domain B BF39_952 PF00303 Thymidylate synthase BF39_953 PF00186 Dihydrofolate reductase BF39_954 PF03717 Penicillin-binding Protein dimerisation domain BF39_954 PF05223 NTF2-like N-terminal transpeptidase domain BF39_954 PF00905 Penicillin binding protein transpeptidase domain BF39_955 PF02525 Flavodoxin-like fold BF39_956 PF01553 Acyltransferase BF39_957 PF03006 Haemolysin-III related BF39_958 PF02416 mttA/Hcf106 family BF39_959 PF00902 Sec-independent protein translocase protein (TatC) BF39_96 PF01047 MarR family BF39_961 PF02645 Uncharacterised protein, DegV family COG1307 BF39_963 PF02630 SCO1/SenC BF39_964 PF00011 Hsp20/alpha crystallin family BF39_965 PF13537 Glutamine amidotransferase domain BF39_965 PF00733 Asparagine synthase BF39_969 PF01497 Periplasmic binding protein BF39_970 PF01063 Amino-transferase class IV BF39_971 PF00881 Nitroreductase family BF39_974 PF00857 Isochorismatase family BF39_975 PF00293 NUDIX domain BF39_976 PF00011 Hsp20/alpha crystallin family BF39_977 PF00924 Mechanosensitive ion channel BF39_978 PF13185 GAF domain BF39_978 PF07730 Histidine kinase BF39_979 PF00072 Response regulator receiver domain BF39_979 PF00196 Bacterial regulatory proteins, luxR family BF39_98 PF12867 DinB superfamily BF39_981 PF01418 Helix-turn-helix domain, rpiR family BF39_981 PF01380 SIS domain BF39_982 PF08240 Alcohol dehydrogenase GroES-like domain BF39_982 PF00107 Zinc-binding dehydrogenase BF39_985 PF00144 Beta-lactamase BF39_989 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_989 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF39_990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF39_993 PF03358 NADPH-dependent FMN reductase BF39_996 PF00005 ABC transporter BF39_996 PF00571 CBS domain BF39_997 PF00528 Binding-protein-dependent transport system inner membrane component BF39_998 PF13520 Amino acid permease