BF39_101	PWY-6703	preQ<sub>0</sub> biosynthesis
BF39_103	PWY-6703	preQ<sub>0</sub> biosynthesis
BF39_104	PWY-6700	queuosine biosynthesis
BF39_1061	PWY-5747	2-methylcitrate cycle II
BF39_1064	PWY-5642	2,4-dinitrotoluene degradation
BF39_1075	PWY-5901	2,3-dihydroxybenzoate biosynthesis
BF39_1076	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_1076	PWY-5901	2,3-dihydroxybenzoate biosynthesis
BF39_1076	PWY-6406	salicylate biosynthesis I
BF39_1082	PWY-6012	acyl carrier protein metabolism I
BF39_1082	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
BF39_1082	PWY-6289	petrobactin biosynthesis
BF39_1126	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
BF39_113	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BF39_113	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_113	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BF39_113	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BF39_113	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_113	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_113	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_113	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
BF39_1143	PWY-2941	L-lysine biosynthesis II
BF39_1143	PWY-2942	L-lysine biosynthesis III
BF39_1143	PWY-5097	L-lysine biosynthesis VI
BF39_1143	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_1143	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
BF39_1143	PWY-6559	spermidine biosynthesis II
BF39_1143	PWY-6562	norspermidine biosynthesis
BF39_1143	PWY-7153	grixazone biosynthesis
BF39_1143	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_1143	PWY-7977	BF39_1143
BF39_115	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BF39_115	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_115	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BF39_115	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BF39_115	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_115	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_115	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_115	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
BF39_1153	PWY-7883	BF39_1153
BF39_116	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BF39_116	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_116	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BF39_116	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BF39_116	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_116	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_116	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_116	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
BF39_1169	PWY-7883	BF39_1169
BF39_1189	PWY-1622	formaldehyde assimilation I (serine pathway)
BF39_1189	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_1211	PWY-5642	2,4-dinitrotoluene degradation
BF39_1215	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
BF39_1251	PWY-4381	fatty acid biosynthesis initiation I
BF39_1251	PWY-5743	3-hydroxypropanoate cycle
BF39_1251	PWY-5744	glyoxylate assimilation
BF39_1251	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BF39_1251	PWY-6722	candicidin biosynthesis
BF39_1252	PWY-5108	L-isoleucine biosynthesis V
BF39_1252	PWY-5132	humulone biosynthesis
BF39_1252	PWY-5133	cohumulone biosynthesis
BF39_1252	PWY-6672	<i>cis</i>-genanyl-CoA degradation
BF39_1252	PWY-7118	chitin degradation to ethanol
BF39_1252	PWY-7857	BF39_1252
BF39_1263	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
BF39_1263	PWY-6153	autoinducer AI-2 biosynthesis I
BF39_1263	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
BF39_129	PWY-723	alkylnitronates degradation
BF39_1311	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_1311	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_1311	PWY-7953	BF39_1311
BF39_1312	PWY-6899	base-degraded thiamin salvage
BF39_1312	PWY-7356	thiamin salvage IV (yeast)
BF39_1334	PWY-5331	taurine biosynthesis
BF39_1340	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_1340	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_1373	PWY-6788	cellulose degradation II (fungi)
BF39_1403	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
BF39_1426	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
BF39_1426	PWY-622	starch biosynthesis
BF39_1426	PWY-7900	BF39_1426
BF39_1449	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
BF39_1449	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
BF39_1449	PWY-7717	BF39_1449
BF39_1449	PWY-7733	BF39_1449
BF39_1449	PWY-7734	BF39_1449
BF39_1449	PWY-7765	BF39_1449
BF39_145	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
BF39_1450	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
BF39_1450	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
BF39_1469	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
BF39_1469	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BF39_1487	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_1487	PWY-5723	Rubisco shunt
BF39_1500	PWY-7883	BF39_1500
BF39_1520	PWY-7805	BF39_1520
BF39_1520	PWY-7807	BF39_1520
BF39_1526	PWY-2941	L-lysine biosynthesis II
BF39_1526	PWY-2942	L-lysine biosynthesis III
BF39_1526	PWY-5097	L-lysine biosynthesis VI
BF39_1529	PWY-4261	glycerol degradation I
BF39_1529	PWY-6118	glycerol-3-phosphate shuttle
BF39_1529	PWY-6952	glycerophosphodiester degradation
BF39_1557	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
BF39_1557	PWY-6153	autoinducer AI-2 biosynthesis I
BF39_1557	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
BF39_1559	PWY-7815	BF39_1559
BF39_1559	PWY-7816	BF39_1559
BF39_1559	PWY-7819	BF39_1559
BF39_158	PWY-5057	L-valine degradation II
BF39_158	PWY-5076	L-leucine degradation III
BF39_158	PWY-5078	L-isoleucine degradation II
BF39_158	PWY-5101	L-isoleucine biosynthesis II
BF39_158	PWY-5103	L-isoleucine biosynthesis III
BF39_158	PWY-5104	L-isoleucine biosynthesis IV
BF39_158	PWY-5108	L-isoleucine biosynthesis V
BF39_158	PWY-7767	BF39_158
BF39_1587	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BF39_1587	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BF39_1587	PWY-5989	stearate biosynthesis II (bacteria and plants)
BF39_1587	PWY-5994	palmitate biosynthesis I (animals and fungi)
BF39_1587	PWY-6113	superpathway of mycolate biosynthesis
BF39_1587	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BF39_1587	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BF39_1587	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BF39_1587	PWY-7663	gondoate biosynthesis (anaerobic)
BF39_1587	PWY-7664	oleate biosynthesis IV (anaerobic)
BF39_1587	PWY-7858	BF39_1587
BF39_1587	PWYG-321	mycolate biosynthesis
BF39_1588	PWY-3961	phosphopantothenate biosynthesis II
BF39_159	PWY-5101	L-isoleucine biosynthesis II
BF39_159	PWY-5103	L-isoleucine biosynthesis III
BF39_159	PWY-5104	L-isoleucine biosynthesis IV
BF39_159	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
BF39_159	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
BF39_159	PWY-6389	(<i>S</i>)-acetoin biosynthesis
BF39_159	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_16	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BF39_160	PWY-5101	L-isoleucine biosynthesis II
BF39_160	PWY-5103	L-isoleucine biosynthesis III
BF39_160	PWY-5104	L-isoleucine biosynthesis IV
BF39_160	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
BF39_160	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
BF39_160	PWY-6389	(<i>S</i>)-acetoin biosynthesis
BF39_160	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_161	PWY-5103	L-isoleucine biosynthesis III
BF39_161	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_162	PWY-6871	3-methylbutanol biosynthesis
BF39_163	PWY-7396	butanol and isobutanol biosynthesis (engineered)
BF39_1636	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BF39_1637	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
BF39_1639	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BF39_1640	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
BF39_1640	PWY-3461	L-tyrosine biosynthesis II
BF39_1640	PWY-3462	L-phenylalanine biosynthesis II
BF39_1640	PWY-6120	L-tyrosine biosynthesis III
BF39_1640	PWY-6164	3-dehydroquinate biosynthesis I
BF39_1640	PWY-6627	salinosporamide A biosynthesis
BF39_1640	PWY-7626	bacilysin biosynthesis
BF39_1640	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
BF39_1655	PWY-7254	TCA cycle VII (acetate-producers)
BF39_1673	PWY-3341	L-proline biosynthesis III
BF39_1673	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BF39_1674	PWY-3341	L-proline biosynthesis III
BF39_1674	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BF39_1675	PWY-3341	L-proline biosynthesis III
BF39_1675	PWY-4981	L-proline biosynthesis II (from arginine)
BF39_1675	PWY-6344	L-ornithine degradation II (Stickland reaction)
BF39_1681	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
BF39_1681	PWY-5491	diethylphosphate degradation
BF39_1685	PWY-6303	methyl indole-3-acetate interconversion
BF39_1685	PWY-6857	retinol biosynthesis
BF39_17	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BF39_1710	PWY-6610	adenine and adenosine salvage IV
BF39_1766	PWY-7942	BF39_1766
BF39_1770	PWY-4041	&gamma;-glutamyl cycle
BF39_1770	PWY-7942	BF39_1770
BF39_1772	PWY-4041	&gamma;-glutamyl cycle
BF39_1772	PWY-7942	BF39_1772
BF39_178	PWY-5669	phosphatidylethanolamine biosynthesis I
BF39_1807	PWY-5392	reductive TCA cycle II
BF39_1807	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_1807	PWY-5690	TCA cycle II (plants and fungi)
BF39_1807	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_1807	PWY-6728	methylaspartate cycle
BF39_1807	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_1807	PWY-7254	TCA cycle VII (acetate-producers)
BF39_1807	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BF39_181	PWY-2941	L-lysine biosynthesis II
BF39_181	PWY-2942	L-lysine biosynthesis III
BF39_181	PWY-5097	L-lysine biosynthesis VI
BF39_1814	PWY-3341	L-proline biosynthesis III
BF39_1814	PWY-4981	L-proline biosynthesis II (from arginine)
BF39_1814	PWY-6344	L-ornithine degradation II (Stickland reaction)
BF39_184	PWY-5278	sulfite oxidation III
BF39_184	PWY-5340	sulfate activation for sulfonation
BF39_184	PWY-6683	sulfate reduction III (assimilatory)
BF39_184	PWY-6932	selenate reduction
BF39_185	PWY-5340	sulfate activation for sulfonation
BF39_1857	PWY-5839	menaquinol-7 biosynthesis
BF39_1857	PWY-5851	demethylmenaquinol-9 biosynthesis
BF39_1857	PWY-5852	demethylmenaquinol-8 biosynthesis I
BF39_1857	PWY-5853	demethylmenaquinol-6 biosynthesis I
BF39_1857	PWY-5890	menaquinol-10 biosynthesis
BF39_1857	PWY-5891	menaquinol-11 biosynthesis
BF39_1857	PWY-5892	menaquinol-12 biosynthesis
BF39_1857	PWY-5895	menaquinol-13 biosynthesis
BF39_186	PWY-6683	sulfate reduction III (assimilatory)
BF39_188	PWY-5194	siroheme biosynthesis
BF39_188	PWY-5196	factor 430 biosynthesis
BF39_188	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BF39_189	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BF39_1890	PWY-5451	acetone degradation I (to methylglyoxal)
BF39_1890	PWY-5665	vanillin biosynthesis I
BF39_1890	PWY-6398	melatonin degradation I
BF39_1890	PWY-6992	1,5-anhydrofructose degradation
BF39_1890	PWY-7466	acetone degradation III (to propane-1,2-diol)
BF39_1890	PWY-7826	BF39_1890
BF39_190	PWY-5194	siroheme biosynthesis
BF39_190	PWY-5196	factor 430 biosynthesis
BF39_190	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BF39_1914	PWY-4381	fatty acid biosynthesis initiation I
BF39_1968	PWY-6409	pyoverdine I biosynthesis
BF39_1968	PWY-6562	norspermidine biosynthesis
BF39_1968	PWY-761	rhizobactin 1021 biosynthesis
BF39_1968	PWY-7855	BF39_1968
BF39_1968	PWY-7988	BF39_1968
BF39_2035	PWY-1042	glycolysis IV (plant cytosol)
BF39_2035	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BF39_2035	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_2035	PWY-5723	Rubisco shunt
BF39_2035	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_2035	PWY-6886	1-butanol autotrophic biosynthesis
BF39_2035	PWY-6901	superpathway of glucose and xylose degradation
BF39_2035	PWY-7003	glycerol degradation to butanol
BF39_2035	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
BF39_2035	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BF39_2059	PWY-7560	methylerythritol phosphate pathway II
BF39_2078	PWY-4261	glycerol degradation I
BF39_2078	PWY-5530	sorbitol biosynthesis II
BF39_2080	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_2080	PWY-5723	Rubisco shunt
BF39_2082	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_2082	PWY-5723	Rubisco shunt
BF39_2082	PWY-6891	thiazole biosynthesis II (Bacillus)
BF39_2082	PWY-6892	thiazole biosynthesis I (E. coli)
BF39_2082	PWY-6901	superpathway of glucose and xylose degradation
BF39_2082	PWY-7560	methylerythritol phosphate pathway II
BF39_2083	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BF39_2084	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BF39_2108	PWY-6174	mevalonate pathway II (archaea)
BF39_2108	PWY-7391	isoprene biosynthesis II (engineered)
BF39_2108	PWY-7524	mevalonate pathway III (archaea)
BF39_2108	PWY-922	mevalonate pathway I
BF39_215	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_215	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_215	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_215	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_222	PWY-4202	arsenate detoxification I (glutaredoxin)
BF39_222	PWY-5532	adenosine nucleotides degradation IV
BF39_222	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
BF39_222	PWY-6608	guanosine nucleotides degradation III
BF39_222	PWY-6609	adenine and adenosine salvage III
BF39_222	PWY-6611	adenine and adenosine salvage V
BF39_222	PWY-6620	guanine and guanosine salvage
BF39_222	PWY-6627	salinosporamide A biosynthesis
BF39_222	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
BF39_222	PWY-7179	purine deoxyribonucleosides degradation I
BF39_222	PWY-7179-1	purine deoxyribonucleosides degradation
BF39_2243	PWY-4983	L-citrulline-nitric oxide cycle
BF39_2243	PWY-4984	urea cycle
BF39_2243	PWY-5	canavanine biosynthesis
BF39_2243	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_2243	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_2249	PWY-5367	petroselinate biosynthesis
BF39_2249	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BF39_2249	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BF39_2249	PWY-5989	stearate biosynthesis II (bacteria and plants)
BF39_2249	PWY-5994	palmitate biosynthesis I (animals and fungi)
BF39_2249	PWY-6113	superpathway of mycolate biosynthesis
BF39_2249	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BF39_2249	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BF39_2249	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BF39_2249	PWY-7663	gondoate biosynthesis (anaerobic)
BF39_2249	PWY-7664	oleate biosynthesis IV (anaerobic)
BF39_2249	PWY-7858	BF39_2249
BF39_2249	PWYG-321	mycolate biosynthesis
BF39_2259	PWY-6823	molybdenum cofactor biosynthesis
BF39_2259	PWY-7887	BF39_2259
BF39_2260	PWY-6823	molybdenum cofactor biosynthesis
BF39_2263	PWY-6823	molybdenum cofactor biosynthesis
BF39_2267	PWY-1881	formate oxidation to CO<sub>2</sub>
BF39_2267	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_2267	PWY-6696	oxalate degradation III
BF39_2267	PWY-7985	BF39_2267
BF39_228	PWY-6854	ethylene biosynthesis III (microbes)
BF39_229	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_229	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_2297	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_2297	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_2297	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_2342	PWY-5028	L-histidine degradation II
BF39_2342	PWY-5030	L-histidine degradation III
BF39_2343	PWY-5028	L-histidine degradation II
BF39_2343	PWY-5030	L-histidine degradation III
BF39_2344	PWY-5028	L-histidine degradation II
BF39_2344	PWY-5030	L-histidine degradation III
BF39_2373	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_2373	PWY-5723	Rubisco shunt
BF39_2373	PWY-6891	thiazole biosynthesis II (Bacillus)
BF39_2373	PWY-6892	thiazole biosynthesis I (E. coli)
BF39_2373	PWY-6901	superpathway of glucose and xylose degradation
BF39_2373	PWY-7560	methylerythritol phosphate pathway II
BF39_2435	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BF39_2456	PWY-381	nitrate reduction II (assimilatory)
BF39_2456	PWY-5675	nitrate reduction V (assimilatory)
BF39_2456	PWY-6549	L-glutamine biosynthesis III
BF39_2456	PWY-6963	ammonia assimilation cycle I
BF39_2456	PWY-6964	ammonia assimilation cycle II
BF39_2467	PWY-2781	<i>cis</i>-zeatin biosynthesis
BF39_2479	PWY-6855	chitin degradation I (archaea)
BF39_2479	PWY-6902	chitin degradation II
BF39_2479	PWY-7822	BF39_2479
BF39_2532	PWY-5392	reductive TCA cycle II
BF39_2532	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_2533	PWY-7533	gliotoxin biosynthesis
BF39_2540	PWY-5269	cardiolipin biosynthesis II
BF39_2540	PWY-5668	cardiolipin biosynthesis I
BF39_2540	PWY-7817	BF39_2540
BF39_2557	PWY-2941	L-lysine biosynthesis II
BF39_2557	PWY-2942	L-lysine biosynthesis III
BF39_2557	PWY-5097	L-lysine biosynthesis VI
BF39_2558	PWY-2941	L-lysine biosynthesis II
BF39_2558	PWY-2942	L-lysine biosynthesis III
BF39_2558	PWY-5097	L-lysine biosynthesis VI
BF39_2558	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
BF39_2558	PWY-6559	spermidine biosynthesis II
BF39_2558	PWY-6562	norspermidine biosynthesis
BF39_2558	PWY-7153	grixazone biosynthesis
BF39_2558	PWY-7977	BF39_2558
BF39_2559	PWY-2941	L-lysine biosynthesis II
BF39_2559	PWY-2942	L-lysine biosynthesis III
BF39_2559	PWY-5097	L-lysine biosynthesis VI
BF39_2559	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_2559	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
BF39_2559	PWY-6559	spermidine biosynthesis II
BF39_2559	PWY-6562	norspermidine biosynthesis
BF39_2559	PWY-7153	grixazone biosynthesis
BF39_2559	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_2559	PWY-7977	BF39_2559
BF39_2567	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
BF39_2567	PWY-6167	flavin biosynthesis II (archaea)
BF39_2567	PWY-6168	flavin biosynthesis III (fungi)
BF39_2567	PWY-7863	BF39_2567
BF39_257	PWY-7205	CMP phosphorylation
BF39_2579	PWY-7560	methylerythritol phosphate pathway II
BF39_2580	PWY-5667	CDP-diacylglycerol biosynthesis I
BF39_2580	PWY-5981	CDP-diacylglycerol biosynthesis III
BF39_2580	PWY-7817	BF39_2580
BF39_259	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
BF39_259	PWY-6174	mevalonate pathway II (archaea)
BF39_259	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
BF39_259	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
BF39_259	PWY-7102	bisabolene biosynthesis
BF39_259	PWY-7391	isoprene biosynthesis II (engineered)
BF39_259	PWY-7524	mevalonate pathway III (archaea)
BF39_259	PWY-7560	methylerythritol phosphate pathway II
BF39_259	PWY-922	mevalonate pathway I
BF39_2593	PWY-5392	reductive TCA cycle II
BF39_2593	PWY-5537	pyruvate fermentation to acetate V
BF39_2593	PWY-5538	pyruvate fermentation to acetate VI
BF39_2593	PWY-5690	TCA cycle II (plants and fungi)
BF39_2593	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_2593	PWY-6728	methylaspartate cycle
BF39_2593	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_2593	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BF39_2594	PWY-5392	reductive TCA cycle II
BF39_2594	PWY-5537	pyruvate fermentation to acetate V
BF39_2594	PWY-5538	pyruvate fermentation to acetate VI
BF39_2594	PWY-5690	TCA cycle II (plants and fungi)
BF39_2594	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_2594	PWY-6728	methylaspartate cycle
BF39_2594	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_2594	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BF39_2599	PWY-6829	tRNA methylation (yeast)
BF39_2599	PWY-7285	methylwyosine biosynthesis
BF39_2599	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
BF39_2609	PWY-5367	petroselinate biosynthesis
BF39_2609	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BF39_2609	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BF39_2609	PWY-5989	stearate biosynthesis II (bacteria and plants)
BF39_2609	PWY-5994	palmitate biosynthesis I (animals and fungi)
BF39_2609	PWY-6113	superpathway of mycolate biosynthesis
BF39_2609	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BF39_2609	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BF39_2609	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BF39_2609	PWY-7663	gondoate biosynthesis (anaerobic)
BF39_2609	PWY-7664	oleate biosynthesis IV (anaerobic)
BF39_2609	PWY-7858	BF39_2609
BF39_2609	PWYG-321	mycolate biosynthesis
BF39_2610	PWY-4381	fatty acid biosynthesis initiation I
BF39_2610	PWY-6799	fatty acid biosynthesis (plant mitochondria)
BF39_2610	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BF39_2617	PWY-6898	thiamin salvage III
BF39_2617	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
BF39_2617	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
BF39_2617	PWY-7356	thiamin salvage IV (yeast)
BF39_2618	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_2618	PWY-5723	Rubisco shunt
BF39_2627	PWY-7851	BF39_2627
BF39_2629	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BF39_2634	PWY-7799	BF39_2634
BF39_2634	PWY-7800	BF39_2634
BF39_2640	PWY-5686	UMP biosynthesis
BF39_2640	PWY-7790	BF39_2640
BF39_2640	PWY-7791	BF39_2640
BF39_2641	PWY-5686	UMP biosynthesis
BF39_2641	PWY-7790	BF39_2641
BF39_2641	PWY-7791	BF39_2641
BF39_2644	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_2644	PWY-5686	UMP biosynthesis
BF39_2644	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_2644	PWY-7790	BF39_2644
BF39_2644	PWY-7791	BF39_2644
BF39_2645	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_2645	PWY-5686	UMP biosynthesis
BF39_2645	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_2645	PWY-7790	BF39_2645
BF39_2645	PWY-7791	BF39_2645
BF39_2646	PWY-5686	UMP biosynthesis
BF39_2646	PWY-7790	BF39_2646
BF39_2646	PWY-7791	BF39_2646
BF39_2647	PWY-5686	UMP biosynthesis
BF39_2647	PWY-7790	BF39_2647
BF39_2647	PWY-7791	BF39_2647
BF39_2649	PWY-7183	pyrimidine nucleobases salvage I
BF39_265	PWY-5667	CDP-diacylglycerol biosynthesis I
BF39_265	PWY-5981	CDP-diacylglycerol biosynthesis III
BF39_265	PWY-7902	BF39_265
BF39_2651	PWY-7884	BF39_2651
BF39_2658	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BF39_2667	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_2667	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_2667	PWY-7953	BF39_2667
BF39_2668	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_2668	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_2668	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_2668	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_2669	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_2669	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_2669	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_2669	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_2670	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_2670	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_2671	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_2671	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_2671	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_2678	PWY-6654	phosphopantothenate biosynthesis III
BF39_2691	PWY-7883	BF39_2691
BF39_271	PWY-5663	tetrahydrobiopterin biosynthesis I
BF39_271	PWY-5664	tetrahydrobiopterin biosynthesis II
BF39_271	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BF39_271	PWY-6703	preQ<sub>0</sub> biosynthesis
BF39_271	PWY-6983	tetrahydrobiopterin biosynthesis III
BF39_271	PWY-7442	drosopterin and aurodrosopterin biosynthesis
BF39_271	PWY-7852	BF39_271
BF39_272	PWY-5807	heptaprenyl diphosphate biosynthesis
BF39_273	PWY-5839	menaquinol-7 biosynthesis
BF39_273	PWY-5844	menaquinol-9 biosynthesis
BF39_273	PWY-5849	menaquinol-6 biosynthesis
BF39_273	PWY-5890	menaquinol-10 biosynthesis
BF39_273	PWY-5891	menaquinol-11 biosynthesis
BF39_273	PWY-5892	menaquinol-12 biosynthesis
BF39_273	PWY-5895	menaquinol-13 biosynthesis
BF39_274	PWY-5807	heptaprenyl diphosphate biosynthesis
BF39_275	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BF39_275	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
BF39_275	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_275	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_275	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
BF39_275	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BF39_275	PWY-7205	CMP phosphorylation
BF39_275	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BF39_275	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_275	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BF39_275	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_275	PWY-7224	purine deoxyribonucleosides salvage
BF39_275	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_275	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
BF39_2754	PWY-7851	BF39_2754
BF39_276	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BF39_2766	PWY-7142	cyanide detoxification II
BF39_2768	PWY-3781	aerobic respiration I (cytochrome c)
BF39_2768	PWY-4521	arsenite oxidation I (respiratory)
BF39_2768	PWY-6692	Fe(II) oxidation
BF39_2768	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BF39_277	PWY-6164	3-dehydroquinate biosynthesis I
BF39_2770	PWY-3781	aerobic respiration I (cytochrome c)
BF39_2770	PWY-4521	arsenite oxidation I (respiratory)
BF39_2770	PWY-6692	Fe(II) oxidation
BF39_2770	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BF39_2774	PWY-5750	itaconate biosynthesis
BF39_2774	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_2774	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
BF39_2775	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_2775	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_2775	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_2775	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_2779	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
BF39_2779	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
BF39_2797	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
BF39_2797	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BF39_2808	PWY-2941	L-lysine biosynthesis II
BF39_2809	PWY-2941	L-lysine biosynthesis II
BF39_2831	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
BF39_2831	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
BF39_2831	PWY-6936	seleno-amino acid biosynthesis
BF39_2831	PWY-702	L-methionine biosynthesis II
BF39_2862	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BF39_2862	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
BF39_2863	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
BF39_2866	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BF39_2866	PWY-5532	adenosine nucleotides degradation IV
BF39_2866	PWY-5723	Rubisco shunt
BF39_2867	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BF39_2868	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BF39_2869	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BF39_2869	PWY-5389	3-methylthiopropanoate biosynthesis
BF39_2884	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BF39_2884	PWY-6855	chitin degradation I (archaea)
BF39_2884	PWY-6906	chitin derivatives degradation
BF39_2885	PWY-6906	chitin derivatives degradation
BF39_2885	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
BF39_2885	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
BF39_2907	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_2907	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_2916	PWY-7181	pyrimidine deoxyribonucleosides degradation
BF39_2917	PWY-4202	arsenate detoxification I (glutaredoxin)
BF39_2917	PWY-5532	adenosine nucleotides degradation IV
BF39_2917	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
BF39_2917	PWY-6608	guanosine nucleotides degradation III
BF39_2917	PWY-6609	adenine and adenosine salvage III
BF39_2917	PWY-6611	adenine and adenosine salvage V
BF39_2917	PWY-6620	guanine and guanosine salvage
BF39_2917	PWY-6627	salinosporamide A biosynthesis
BF39_2917	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
BF39_2917	PWY-7179	purine deoxyribonucleosides degradation I
BF39_2917	PWY-7179-1	purine deoxyribonucleosides degradation
BF39_2918	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
BF39_292	PWY-2941	L-lysine biosynthesis II
BF39_292	PWY-2942	L-lysine biosynthesis III
BF39_292	PWY-5097	L-lysine biosynthesis VI
BF39_2940	PWY-7991	BF39_2940
BF39_2941	PWY-6167	flavin biosynthesis II (archaea)
BF39_2941	PWY-6168	flavin biosynthesis III (fungi)
BF39_2941	PWY-7980	BF39_2941
BF39_2942	PWY-6167	flavin biosynthesis II (archaea)
BF39_2942	PWY-6168	flavin biosynthesis III (fungi)
BF39_2942	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BF39_2942	PWY-7991	BF39_2942
BF39_2944	PWY-6167	flavin biosynthesis II (archaea)
BF39_2944	PWY-6168	flavin biosynthesis III (fungi)
BF39_2945	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
BF39_2946	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BF39_2948	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BF39_2948	PWY-6578	8-amino-7-oxononanoate biosynthesis III
BF39_2948	PWY-7147	8-amino-7-oxononanoate biosynthesis II
BF39_2949	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
BF39_2958	PWY-4981	L-proline biosynthesis II (from arginine)
BF39_2958	PWY-4984	urea cycle
BF39_2958	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_2960	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_2960	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_2961	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_2962	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_2962	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_2967	PWY-3341	L-proline biosynthesis III
BF39_2967	PWY-4981	L-proline biosynthesis II (from arginine)
BF39_2967	PWY-6344	L-ornithine degradation II (Stickland reaction)
BF39_297	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BF39_297	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BF39_2985	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_2985	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_2985	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_2985	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_2989	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
BF39_2989	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
BF39_299	PWY-6654	phosphopantothenate biosynthesis III
BF39_2990	PWY-5482	pyruvate fermentation to acetate II
BF39_2990	PWY-5485	pyruvate fermentation to acetate IV
BF39_2990	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_2992	PWY-1281	sulfoacetaldehyde degradation I
BF39_2992	PWY-5482	pyruvate fermentation to acetate II
BF39_2992	PWY-5485	pyruvate fermentation to acetate IV
BF39_2992	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_2992	PWY-6637	sulfolactate degradation II
BF39_3003	PWY-6891	thiazole biosynthesis II (Bacillus)
BF39_3003	PWY-6892	thiazole biosynthesis I (E. coli)
BF39_3003	PWY-7560	methylerythritol phosphate pathway II
BF39_3007	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
BF39_3007	PWY-2201	folate transformations I
BF39_3007	PWY-3841	folate transformations II
BF39_3007	PWY-5030	L-histidine degradation III
BF39_3007	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_3007	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
BF39_3007	PWY-7909	BF39_3007
BF39_301	PWY-5155	&beta;-alanine biosynthesis III
BF39_3025	PWY-7799	BF39_3025
BF39_3025	PWY-7800	BF39_3025
BF39_3026	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BF39_3026	PWY-6416	quinate degradation II
BF39_3026	PWY-6707	gallate biosynthesis
BF39_3034	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BF39_3034	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BF39_3059	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BF39_3077	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_3077	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_3077	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_3077	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_3078	PWY-2201	folate transformations I
BF39_3078	PWY-3841	folate transformations II
BF39_3078	PWY-7977	BF39_3078
BF39_3079	PWY-2201	folate transformations I
BF39_3079	PWY-3841	folate transformations II
BF39_3087	PWY-2722	trehalose degradation IV
BF39_3087	PWY-2723	trehalose degradation V
BF39_3087	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BF39_3087	PWY-5661	GDP-glucose biosynthesis
BF39_3087	PWY-621	sucrose degradation III (sucrose invertase)
BF39_3087	PWY-7238	sucrose biosynthesis II
BF39_3087	PWY-7385	1,3-propanediol biosynthesis (engineered)
BF39_309	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_309	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_309	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_309	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_3092	PWY-6749	CMP-legionaminate biosynthesis I
BF39_31	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_31	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_3100	PWY-6854	ethylene biosynthesis III (microbes)
BF39_3113	PWY-7560	methylerythritol phosphate pathway II
BF39_3124	PWY-6556	pyrimidine ribonucleosides salvage II
BF39_3124	PWY-7181	pyrimidine deoxyribonucleosides degradation
BF39_3124	PWY-7193	pyrimidine ribonucleosides salvage I
BF39_3124	PWY-7199	pyrimidine deoxyribonucleosides salvage
BF39_3125	PWY-7039	phosphatidate metabolism, as a signaling molecule
BF39_3125	PWY-7817	BF39_3125
BF39_3149	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BF39_3151	PWY-3341	L-proline biosynthesis III
BF39_3151	PWY-4981	L-proline biosynthesis II (from arginine)
BF39_3151	PWY-6344	L-ornithine degradation II (Stickland reaction)
BF39_3155	PWY-5381	pyridine nucleotide cycling (plants)
BF39_3155	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
BF39_3155	PWY-7761	BF39_3155
BF39_3157	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
BF39_3159	PWY-5269	cardiolipin biosynthesis II
BF39_3159	PWY-5668	cardiolipin biosynthesis I
BF39_3159	PWY-7817	BF39_3159
BF39_3161	PWY-5669	phosphatidylethanolamine biosynthesis I
BF39_3170	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
BF39_3170	PWY-5491	diethylphosphate degradation
BF39_3181	PWY-7158	L-phenylalanine degradation V
BF39_3194	PWY-3162	L-tryptophan degradation V (side chain pathway)
BF39_3194	PWY-5057	L-valine degradation II
BF39_3194	PWY-5076	L-leucine degradation III
BF39_3194	PWY-5078	L-isoleucine degradation II
BF39_3194	PWY-5079	L-phenylalanine degradation III
BF39_3194	PWY-5082	L-methionine degradation III
BF39_3194	PWY-5480	pyruvate fermentation to ethanol I
BF39_3194	PWY-5486	pyruvate fermentation to ethanol II
BF39_3194	PWY-5751	phenylethanol biosynthesis
BF39_3194	PWY-6313	serotonin degradation
BF39_3194	PWY-6333	acetaldehyde biosynthesis I
BF39_3194	PWY-6342	noradrenaline and adrenaline degradation
BF39_3194	PWY-6587	pyruvate fermentation to ethanol III
BF39_3194	PWY-6802	salidroside biosynthesis
BF39_3194	PWY-6871	3-methylbutanol biosynthesis
BF39_3194	PWY-7013	L-1,2-propanediol degradation
BF39_3194	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_3194	PWY-7118	chitin degradation to ethanol
BF39_3194	PWY-7396	butanol and isobutanol biosynthesis (engineered)
BF39_3197	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
BF39_3197	PWY-6153	autoinducer AI-2 biosynthesis I
BF39_3197	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
BF39_3203	PWY-7193	pyrimidine ribonucleosides salvage I
BF39_3219	PWY-7887	BF39_3219
BF39_3219	PWY-7892	BF39_3219
BF39_3220	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
BF39_3230	PWY-6605	adenine and adenosine salvage II
BF39_3230	PWY-6610	adenine and adenosine salvage IV
BF39_3230	PWY-7805	BF39_3230
BF39_3230	PWY-7807	BF39_3230
BF39_3231	PWY-7805	BF39_3231
BF39_3231	PWY-7807	BF39_3231
BF39_3239	PWY-6700	queuosine biosynthesis
BF39_3240	PWY-6700	queuosine biosynthesis
BF39_3252	PWY-5316	nicotine biosynthesis
BF39_3252	PWY-7342	superpathway of nicotine biosynthesis
BF39_3253	PWY-5316	nicotine biosynthesis
BF39_3253	PWY-5381	pyridine nucleotide cycling (plants)
BF39_3253	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
BF39_3253	PWY-7342	superpathway of nicotine biosynthesis
BF39_3254	PWY-5316	nicotine biosynthesis
BF39_3254	PWY-7342	superpathway of nicotine biosynthesis
BF39_3255	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
BF39_3258	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
BF39_326	PWY-7799	BF39_326
BF39_326	PWY-7800	BF39_326
BF39_3281	PWY-2161	folate polyglutamylation
BF39_3285	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_3286	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_3286	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
BF39_3287	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_3287	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
BF39_3288	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_3288	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
BF39_3290	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_3309	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_3309	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_3342	PWY-3781	aerobic respiration I (cytochrome c)
BF39_3342	PWY-4302	aerobic respiration III (alternative oxidase pathway)
BF39_3342	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_3342	PWY-5690	TCA cycle II (plants and fungi)
BF39_3342	PWY-6728	methylaspartate cycle
BF39_3342	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_3342	PWY-7254	TCA cycle VII (acetate-producers)
BF39_3342	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BF39_3343	PWY-3781	aerobic respiration I (cytochrome c)
BF39_3343	PWY-4302	aerobic respiration III (alternative oxidase pathway)
BF39_3343	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_3343	PWY-5690	TCA cycle II (plants and fungi)
BF39_3343	PWY-6728	methylaspartate cycle
BF39_3343	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_3343	PWY-7254	TCA cycle VII (acetate-producers)
BF39_3343	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BF39_3411	PWY-6834	spermidine biosynthesis III
BF39_3412	PWY-1042	glycolysis IV (plant cytosol)
BF39_3412	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3412	PWY-6901	superpathway of glucose and xylose degradation
BF39_3412	PWY-7003	glycerol degradation to butanol
BF39_3413	PWY-7851	BF39_3413
BF39_3421	PWY-1622	formaldehyde assimilation I (serine pathway)
BF39_3421	PWY-5392	reductive TCA cycle II
BF39_3421	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_3421	PWY-5690	TCA cycle II (plants and fungi)
BF39_3421	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_3421	PWY-6728	methylaspartate cycle
BF39_3421	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_3421	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BF39_3421	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BF39_3422	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_3422	PWY-6549	L-glutamine biosynthesis III
BF39_3422	PWY-6728	methylaspartate cycle
BF39_3422	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_3422	PWY-7124	ethylene biosynthesis V (engineered)
BF39_3422	PWY-7254	TCA cycle VII (acetate-producers)
BF39_3422	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BF39_3427	PWY-1042	glycolysis IV (plant cytosol)
BF39_3427	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BF39_3427	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3427	PWY-5723	Rubisco shunt
BF39_3427	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_3427	PWY-6886	1-butanol autotrophic biosynthesis
BF39_3427	PWY-6901	superpathway of glucose and xylose degradation
BF39_3427	PWY-7003	glycerol degradation to butanol
BF39_3427	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
BF39_3427	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BF39_3428	PWY-1042	glycolysis IV (plant cytosol)
BF39_3428	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_3428	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3428	PWY-7385	1,3-propanediol biosynthesis (engineered)
BF39_3429	PWY-4381	fatty acid biosynthesis initiation I
BF39_3429	PWY-5743	3-hydroxypropanoate cycle
BF39_3429	PWY-5744	glyoxylate assimilation
BF39_3429	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BF39_3429	PWY-6722	candicidin biosynthesis
BF39_3430	PWY-4381	fatty acid biosynthesis initiation I
BF39_3430	PWY-5743	3-hydroxypropanoate cycle
BF39_3430	PWY-5744	glyoxylate assimilation
BF39_3430	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BF39_3430	PWY-6722	candicidin biosynthesis
BF39_3436	PWY-7805	BF39_3436
BF39_3436	PWY-7807	BF39_3436
BF39_3440	PWY-1281	sulfoacetaldehyde degradation I
BF39_3440	PWY-5482	pyruvate fermentation to acetate II
BF39_3440	PWY-5485	pyruvate fermentation to acetate IV
BF39_3440	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_3440	PWY-6637	sulfolactate degradation II
BF39_3443	PWY-7799	BF39_3443
BF39_3443	PWY-7800	BF39_3443
BF39_3461	PWY-4983	L-citrulline-nitric oxide cycle
BF39_3461	PWY-4984	urea cycle
BF39_3461	PWY-5	canavanine biosynthesis
BF39_3461	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_3461	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_3462	PWY-4983	L-citrulline-nitric oxide cycle
BF39_3462	PWY-4984	urea cycle
BF39_3462	PWY-5	canavanine biosynthesis
BF39_3462	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
BF39_3462	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
BF39_3470	PWY-5482	pyruvate fermentation to acetate II
BF39_3470	PWY-5485	pyruvate fermentation to acetate IV
BF39_3470	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_3475	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
BF39_3475	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BF39_3475	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
BF39_3481	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
BF39_3519	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_3519	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_3519	PWY-7953	BF39_3519
BF39_3520	PWY-5381	pyridine nucleotide cycling (plants)
BF39_3553	PWY-6823	molybdenum cofactor biosynthesis
BF39_3553	PWY-7887	BF39_3553
BF39_3555	PWY-6823	molybdenum cofactor biosynthesis
BF39_3556	PWY-6823	molybdenum cofactor biosynthesis
BF39_3558	PWY-6823	molybdenum cofactor biosynthesis
BF39_3585	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_3585	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_3593	PWY-5964	guanylyl molybdenum cofactor biosynthesis
BF39_3593	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
BF39_3597	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
BF39_3597	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
BF39_3598	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_3598	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BF39_3620	PWY-6502	oxidized GTP and dGTP detoxification
BF39_3624	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
BF39_3624	PWY-6153	autoinducer AI-2 biosynthesis I
BF39_3624	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
BF39_3625	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
BF39_3625	PWY-5743	3-hydroxypropanoate cycle
BF39_3625	PWY-5744	glyoxylate assimilation
BF39_3625	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BF39_3625	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_3625	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
BF39_3625	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
BF39_3650	PWY-6599	guanine and guanosine salvage II
BF39_3650	PWY-6609	adenine and adenosine salvage III
BF39_3650	PWY-6610	adenine and adenosine salvage IV
BF39_3650	PWY-6620	guanine and guanosine salvage
BF39_3675	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BF39_3675	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
BF39_3675	PWY-7242	D-fructuronate degradation
BF39_3675	PWY-7310	D-glucosaminate degradation
BF39_3675	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
BF39_3676	PWY-7310	D-glucosaminate degradation
BF39_3683	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_3684	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_3685	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_3686	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_3687	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_3688	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_3688	PWY-5901	2,3-dihydroxybenzoate biosynthesis
BF39_3688	PWY-6406	salicylate biosynthesis I
BF39_3689	PWY-5839	menaquinol-7 biosynthesis
BF39_3689	PWY-5851	demethylmenaquinol-9 biosynthesis
BF39_3689	PWY-5852	demethylmenaquinol-8 biosynthesis I
BF39_3689	PWY-5853	demethylmenaquinol-6 biosynthesis I
BF39_3689	PWY-5890	menaquinol-10 biosynthesis
BF39_3689	PWY-5891	menaquinol-11 biosynthesis
BF39_3689	PWY-5892	menaquinol-12 biosynthesis
BF39_3689	PWY-5895	menaquinol-13 biosynthesis
BF39_3695	PWY-5941	glycogen degradation II (eukaryotic)
BF39_3695	PWY-6731	starch degradation III
BF39_3695	PWY-6737	starch degradation V
BF39_3695	PWY-7238	sucrose biosynthesis II
BF39_3696	PWY-622	starch biosynthesis
BF39_3698	PWY-622	starch biosynthesis
BF39_3698	PWY-7902	BF39_3698
BF39_3701	PWY-5481	pyruvate fermentation to lactate
BF39_3701	PWY-6901	superpathway of glucose and xylose degradation
BF39_3731	PWY-3801	sucrose degradation II (sucrose synthase)
BF39_3731	PWY-5054	sorbitol biosynthesis I
BF39_3731	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
BF39_3731	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BF39_3731	PWY-5659	GDP-mannose biosynthesis
BF39_3731	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_3731	PWY-621	sucrose degradation III (sucrose invertase)
BF39_3731	PWY-622	starch biosynthesis
BF39_3731	PWY-6981	chitin biosynthesis
BF39_3731	PWY-6992	1,5-anhydrofructose degradation
BF39_3731	PWY-7238	sucrose biosynthesis II
BF39_3731	PWY-7347	sucrose biosynthesis III
BF39_3731	PWY-7385	1,3-propanediol biosynthesis (engineered)
BF39_3740	PWY-6854	ethylene biosynthesis III (microbes)
BF39_3752	PWY-3801	sucrose degradation II (sucrose synthase)
BF39_3752	PWY-6527	stachyose degradation
BF39_3752	PWY-7238	sucrose biosynthesis II
BF39_3752	PWY-7343	UDP-glucose biosynthesis
BF39_3752	PWY-7817	BF39_3752
BF39_3753	PWY-6749	CMP-legionaminate biosynthesis I
BF39_3760	PWY-101	photosynthesis light reactions
BF39_3769	PWY-2941	L-lysine biosynthesis II
BF39_3769	PWY-5097	L-lysine biosynthesis VI
BF39_3792	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3802	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BF39_3802	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BF39_3811	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
BF39_3831	PWY-5481	pyruvate fermentation to lactate
BF39_3831	PWY-6901	superpathway of glucose and xylose degradation
BF39_3840	PWY-1361	benzoyl-CoA degradation I (aerobic)
BF39_3840	PWY-5109	2-methylbutanoate biosynthesis
BF39_3840	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
BF39_3840	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
BF39_3840	PWY-5177	glutaryl-CoA degradation
BF39_3840	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BF39_3840	PWY-6435	4-hydroxybenzoate biosynthesis V
BF39_3840	PWY-6583	pyruvate fermentation to butanol I
BF39_3840	PWY-6863	pyruvate fermentation to hexanol
BF39_3840	PWY-6883	pyruvate fermentation to butanol II
BF39_3840	PWY-6944	androstenedione degradation
BF39_3840	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
BF39_3840	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
BF39_3840	PWY-7007	methyl ketone biosynthesis
BF39_3840	PWY-7046	4-coumarate degradation (anaerobic)
BF39_3840	PWY-7094	fatty acid salvage
BF39_3840	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
BF39_3840	PWY-735	jasmonic acid biosynthesis
BF39_3840	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
BF39_3840	PWY-7606	docosahexaenoate biosynthesis III (mammals)
BF39_3840	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
BF39_3840	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
BF39_3840	PWY-7726	BF39_3840
BF39_3840	PWY-7778	BF39_3840
BF39_3840	PWY-7779	BF39_3840
BF39_3843	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
BF39_3843	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BF39_3902	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_3902	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_3902	PWY-7953	BF39_3902
BF39_3948	PWY-1042	glycolysis IV (plant cytosol)
BF39_3948	PWY-1622	formaldehyde assimilation I (serine pathway)
BF39_3948	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BF39_3948	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3948	PWY-5723	Rubisco shunt
BF39_3948	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_3948	PWY-6886	1-butanol autotrophic biosynthesis
BF39_3948	PWY-6901	superpathway of glucose and xylose degradation
BF39_3948	PWY-7003	glycerol degradation to butanol
BF39_3948	PWY-7124	ethylene biosynthesis V (engineered)
BF39_3948	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
BF39_3949	PWY-1042	glycolysis IV (plant cytosol)
BF39_3949	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
BF39_3949	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3949	PWY-5723	Rubisco shunt
BF39_3949	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_3949	PWY-6886	1-butanol autotrophic biosynthesis
BF39_3949	PWY-6901	superpathway of glucose and xylose degradation
BF39_3949	PWY-7003	glycerol degradation to butanol
BF39_3949	PWY-7124	ethylene biosynthesis V (engineered)
BF39_3949	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
BF39_3950	PWY-1042	glycolysis IV (plant cytosol)
BF39_3950	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3950	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_3950	PWY-7003	glycerol degradation to butanol
BF39_3951	PWY-1042	glycolysis IV (plant cytosol)
BF39_3951	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3951	PWY-6886	1-butanol autotrophic biosynthesis
BF39_3951	PWY-6901	superpathway of glucose and xylose degradation
BF39_3951	PWY-7003	glycerol degradation to butanol
BF39_3952	PWY-1042	glycolysis IV (plant cytosol)
BF39_3952	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_3952	PWY-6901	superpathway of glucose and xylose degradation
BF39_3952	PWY-7003	glycerol degradation to butanol
BF39_3974	PWY-7805	BF39_3974
BF39_3974	PWY-7807	BF39_3974
BF39_4012	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
BF39_4012	PWY-7820	BF39_4012
BF39_4013	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_4013	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_4013	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_4024	PWY-6834	spermidine biosynthesis III
BF39_4039	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
BF39_4043	PWY-7511	protein ubiquitylation
BF39_4077	PWY-3821	galactose degradation III
BF39_4077	PWY-6317	galactose degradation I (Leloir pathway)
BF39_4077	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
BF39_4077	PWY-6527	stachyose degradation
BF39_4077	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
BF39_4077	PWY-7344	UDP-D-galactose biosynthesis
BF39_4079	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BF39_4079	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BF39_4079	PWY-5989	stearate biosynthesis II (bacteria and plants)
BF39_4079	PWY-5994	palmitate biosynthesis I (animals and fungi)
BF39_4079	PWY-6113	superpathway of mycolate biosynthesis
BF39_4079	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BF39_4079	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BF39_4079	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
BF39_4079	PWY-7663	gondoate biosynthesis (anaerobic)
BF39_4079	PWY-7664	oleate biosynthesis IV (anaerobic)
BF39_4079	PWY-7858	BF39_4079
BF39_4079	PWYG-321	mycolate biosynthesis
BF39_4084	PWY-7651	heparan sulfate degradation
BF39_4099	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_4099	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_4099	PWY-7953	BF39_4099
BF39_4117	PWY-7980	BF39_4117
BF39_4119	PWY-7980	BF39_4119
BF39_4126	PWY-7183	pyrimidine nucleobases salvage I
BF39_4127	PWY-1622	formaldehyde assimilation I (serine pathway)
BF39_4127	PWY-181	photorespiration
BF39_4127	PWY-2161	folate polyglutamylation
BF39_4127	PWY-2201	folate transformations I
BF39_4127	PWY-3661	glycine betaine degradation I
BF39_4127	PWY-3661-1	glycine betaine degradation II (mammalian)
BF39_4127	PWY-3841	folate transformations II
BF39_4127	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_4141	PWY-7199	pyrimidine deoxyribonucleosides salvage
BF39_4143	PWY-7980	BF39_4143
BF39_4144	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_4145	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_4145	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_4145	PWY-7953	BF39_4145
BF39_4146	PWY-1042	glycolysis IV (plant cytosol)
BF39_4146	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_4146	PWY-5484	glycolysis II (from fructose 6-phosphate)
BF39_4146	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
BF39_4146	PWY-7385	1,3-propanediol biosynthesis (engineered)
BF39_4149	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
BF39_4149	PWY-7177	UTP and CTP dephosphorylation II
BF39_4149	PWY-7185	UTP and CTP dephosphorylation I
BF39_4154	PWY-1361	benzoyl-CoA degradation I (aerobic)
BF39_4154	PWY-5109	2-methylbutanoate biosynthesis
BF39_4154	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
BF39_4154	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
BF39_4154	PWY-5177	glutaryl-CoA degradation
BF39_4154	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
BF39_4154	PWY-6435	4-hydroxybenzoate biosynthesis V
BF39_4154	PWY-6583	pyruvate fermentation to butanol I
BF39_4154	PWY-6863	pyruvate fermentation to hexanol
BF39_4154	PWY-6883	pyruvate fermentation to butanol II
BF39_4154	PWY-6944	androstenedione degradation
BF39_4154	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
BF39_4154	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
BF39_4154	PWY-7007	methyl ketone biosynthesis
BF39_4154	PWY-7046	4-coumarate degradation (anaerobic)
BF39_4154	PWY-7094	fatty acid salvage
BF39_4154	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
BF39_4154	PWY-735	jasmonic acid biosynthesis
BF39_4154	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
BF39_4154	PWY-7606	docosahexaenoate biosynthesis III (mammals)
BF39_4154	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
BF39_4154	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
BF39_4154	PWY-7726	BF39_4154
BF39_4154	PWY-7778	BF39_4154
BF39_4154	PWY-7779	BF39_4154
BF39_4167	PWY-7799	BF39_4167
BF39_4167	PWY-7800	BF39_4167
BF39_418	PWY-7980	BF39_418
BF39_4181	PWY-40	putrescine biosynthesis I
BF39_4181	PWY-6305	putrescine biosynthesis IV
BF39_4186	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_4186	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_4186	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_4186	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_4199	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BF39_4199	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BF39_4200	PWY-1281	sulfoacetaldehyde degradation I
BF39_4200	PWY-5482	pyruvate fermentation to acetate II
BF39_4200	PWY-5485	pyruvate fermentation to acetate IV
BF39_4200	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_4200	PWY-6637	sulfolactate degradation II
BF39_4202	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_4202	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_4227	PWY-6910	hydroxymethylpyrimidine salvage
BF39_4227	PWY-7356	thiamin salvage IV (yeast)
BF39_4227	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BF39_4233	PWY-7815	BF39_4233
BF39_4233	PWY-7816	BF39_4233
BF39_4233	PWY-7819	BF39_4233
BF39_4259	PWY-6854	ethylene biosynthesis III (microbes)
BF39_4263	PWY-3821	galactose degradation III
BF39_4263	PWY-6317	galactose degradation I (Leloir pathway)
BF39_4263	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
BF39_4263	PWY-6527	stachyose degradation
BF39_4263	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
BF39_4263	PWY-7344	UDP-D-galactose biosynthesis
BF39_4283	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
BF39_4286	PWY-7805	BF39_4286
BF39_4286	PWY-7807	BF39_4286
BF39_4316	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
BF39_4316	PWY-6596	adenosine nucleotides degradation I
BF39_4316	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BF39_4317	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_4317	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_4318	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
BF39_4319	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
BF39_4320	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
BF39_4338	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
BF39_4338	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_4338	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_4338	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
BF39_4338	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BF39_4338	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BF39_4353	PWY-7560	methylerythritol phosphate pathway II
BF39_4357	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
BF39_4359	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
BF39_4375	PWY-6599	guanine and guanosine salvage II
BF39_4375	PWY-6609	adenine and adenosine salvage III
BF39_4375	PWY-6610	adenine and adenosine salvage IV
BF39_4375	PWY-6620	guanine and guanosine salvage
BF39_4377	PWY-3961	phosphopantothenate biosynthesis II
BF39_4379	PWY-6936	seleno-amino acid biosynthesis
BF39_4380	PWY-5958	acridone alkaloid biosynthesis
BF39_4380	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
BF39_4380	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
BF39_4381	PWY-5958	acridone alkaloid biosynthesis
BF39_4381	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
BF39_4381	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
BF39_4383	PWY-6614	tetrahydrofolate biosynthesis
BF39_4384	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BF39_4384	PWY-6148	tetrahydromethanopterin biosynthesis
BF39_4384	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
BF39_4384	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BF39_4385	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
BF39_4385	PWY-6148	tetrahydromethanopterin biosynthesis
BF39_4385	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
BF39_4385	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
BF39_4385	PWY-7852	BF39_4385
BF39_4385	PWY-7853	BF39_4385
BF39_4400	PWY-7560	methylerythritol phosphate pathway II
BF39_4401	PWY-7560	methylerythritol phosphate pathway II
BF39_4402	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_4403	PWY-6936	seleno-amino acid biosynthesis
BF39_4403	PWY-7274	D-cycloserine biosynthesis
BF39_4403	PWY-7870	BF39_4403
BF39_4445	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
BF39_4446	PWY-7799	BF39_4446
BF39_4446	PWY-7800	BF39_4446
BF39_4461	PWY-7883	BF39_4461
BF39_4482	PWY-31	canavanine degradation
BF39_4482	PWY-4984	urea cycle
BF39_4482	PWY-6305	putrescine biosynthesis IV
BF39_4482	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BF39_4485	PWY-6749	CMP-legionaminate biosynthesis I
BF39_4486	PWY-6749	CMP-legionaminate biosynthesis I
BF39_4490	PWY-4261	glycerol degradation I
BF39_4525	PWY-3341	L-proline biosynthesis III
BF39_4525	PWY-4981	L-proline biosynthesis II (from arginine)
BF39_4525	PWY-6344	L-ornithine degradation II (Stickland reaction)
BF39_4569	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_4569	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_4569	PWY-7953	BF39_4569
BF39_4570	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_4570	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_4570	PWY-7953	BF39_4570
BF39_4571	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_4571	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_4571	PWY-7953	BF39_4571
BF39_4575	PWY-6012	acyl carrier protein metabolism I
BF39_4575	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
BF39_4575	PWY-6289	petrobactin biosynthesis
BF39_4577	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BF39_4609	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
BF39_4632	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
BF39_4640	PWY-6123	inosine-5'-phosphate biosynthesis I
BF39_4640	PWY-7234	inosine-5'-phosphate biosynthesis III
BF39_4642	PWY-6123	inosine-5'-phosphate biosynthesis I
BF39_4642	PWY-6124	inosine-5'-phosphate biosynthesis II
BF39_4642	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
BF39_4642	PWY-7234	inosine-5'-phosphate biosynthesis III
BF39_4643	PWY-6123	inosine-5'-phosphate biosynthesis I
BF39_4643	PWY-6124	inosine-5'-phosphate biosynthesis II
BF39_4643	PWY-7234	inosine-5'-phosphate biosynthesis III
BF39_4644	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BF39_4644	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BF39_4644	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BF39_4645	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BF39_4645	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BF39_4645	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BF39_4646	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BF39_4646	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BF39_4646	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BF39_4647	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BF39_4647	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BF39_4647	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BF39_4647	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
BF39_4648	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BF39_4648	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BF39_4648	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BF39_4649	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BF39_4649	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
BF39_4650	PWY-6123	inosine-5'-phosphate biosynthesis I
BF39_4650	PWY-6124	inosine-5'-phosphate biosynthesis II
BF39_4650	PWY-7234	inosine-5'-phosphate biosynthesis III
BF39_4651	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
BF39_4651	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
BF39_4651	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
BF39_4660	PWY-6853	ethylene biosynthesis II (microbes)
BF39_4673	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
BF39_4699	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
BF39_4700	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
BF39_4700	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
BF39_4705	PWY-101	photosynthesis light reactions
BF39_4715	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
BF39_4715	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
BF39_4715	PWY-7717	BF39_4715
BF39_4715	PWY-7733	BF39_4715
BF39_4715	PWY-7734	BF39_4715
BF39_4715	PWY-7765	BF39_4715
BF39_4731	PWY-6897	thiamin salvage II
BF39_4731	PWY-7356	thiamin salvage IV (yeast)
BF39_4731	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BF39_4732	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
BF39_4732	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
BF39_4732	PWY-6897	thiamin salvage II
BF39_4732	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
BF39_4732	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
BF39_4732	PWY-7356	thiamin salvage IV (yeast)
BF39_4732	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BF39_4740	PWY-6855	chitin degradation I (archaea)
BF39_4740	PWY-6902	chitin degradation II
BF39_4740	PWY-7822	BF39_4740
BF39_4779	PWY-5392	reductive TCA cycle II
BF39_4779	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_4779	PWY-5690	TCA cycle II (plants and fungi)
BF39_4779	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_4779	PWY-6728	methylaspartate cycle
BF39_4779	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_4779	PWY-7254	TCA cycle VII (acetate-producers)
BF39_4779	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BF39_4840	PWY-7883	BF39_4840
BF39_4848	PWY-7511	protein ubiquitylation
BF39_4862	PWY-5480	pyruvate fermentation to ethanol I
BF39_4862	PWY-5485	pyruvate fermentation to acetate IV
BF39_4862	PWY-5493	reductive monocarboxylic acid cycle
BF39_4864	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_4864	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_4864	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_4864	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_4864	PWY-7817	BF39_4864
BF39_4883	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_4914	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_4914	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_4914	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_4914	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_4917	PWY-6700	queuosine biosynthesis
BF39_4961	PWY-1881	formate oxidation to CO<sub>2</sub>
BF39_4961	PWY-5497	purine nucleobases degradation II (anaerobic)
BF39_4961	PWY-6696	oxalate degradation III
BF39_4961	PWY-7985	BF39_4961
BF39_4969	PWY-5381	pyridine nucleotide cycling (plants)
BF39_498	PWY-5392	reductive TCA cycle II
BF39_498	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_498	PWY-5690	TCA cycle II (plants and fungi)
BF39_498	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_498	PWY-6728	methylaspartate cycle
BF39_498	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_498	PWY-7254	TCA cycle VII (acetate-producers)
BF39_498	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BF39_4981	PWY-5392	reductive TCA cycle II
BF39_4981	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_4981	PWY-5690	TCA cycle II (plants and fungi)
BF39_4981	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_4981	PWY-6728	methylaspartate cycle
BF39_4981	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_4981	PWY-7254	TCA cycle VII (acetate-producers)
BF39_4981	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BF39_5043	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
BF39_5043	PWY-5723	Rubisco shunt
BF39_5049	PWY-7782	BF39_5049
BF39_5049	PWY-7783	BF39_5049
BF39_5051	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BF39_5055	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
BF39_5075	PWY-3781	aerobic respiration I (cytochrome c)
BF39_5075	PWY-4521	arsenite oxidation I (respiratory)
BF39_5075	PWY-6692	Fe(II) oxidation
BF39_5075	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
BF39_5122	PWY-6899	base-degraded thiamin salvage
BF39_5122	PWY-7356	thiamin salvage IV (yeast)
BF39_5126	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
BF39_5126	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
BF39_5126	PWY-6897	thiamin salvage II
BF39_5126	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
BF39_5126	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
BF39_5126	PWY-7356	thiamin salvage IV (yeast)
BF39_5126	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BF39_5127	PWY-7396	butanol and isobutanol biosynthesis (engineered)
BF39_5127	PWY-7806	BF39_5127
BF39_5129	PWY-6891	thiazole biosynthesis II (Bacillus)
BF39_5129	PWY-6892	thiazole biosynthesis I (E. coli)
BF39_5130	PWY-6891	thiazole biosynthesis II (Bacillus)
BF39_5130	PWY-6892	thiazole biosynthesis I (E. coli)
BF39_5131	PWY-6910	hydroxymethylpyrimidine salvage
BF39_5131	PWY-7356	thiamin salvage IV (yeast)
BF39_5131	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
BF39_5164	PWY-6483	ceramide degradation
BF39_5164	PWY-7119	sphingolipid recycling and degradation (yeast)
BF39_5204	PWY-7511	protein ubiquitylation
BF39_5229	PWY-7352	daunorubicin biosynthesis
BF39_5229	PWY-7354	aclacinomycin biosynthesis
BF39_5238	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_5238	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_5255	PWY-5101	L-isoleucine biosynthesis II
BF39_5255	PWY-5103	L-isoleucine biosynthesis III
BF39_5255	PWY-5104	L-isoleucine biosynthesis IV
BF39_5255	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
BF39_5255	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
BF39_5255	PWY-6389	(<i>S</i>)-acetoin biosynthesis
BF39_5255	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_5256	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
BF39_528	PWY-5392	reductive TCA cycle II
BF39_528	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
BF39_528	PWY-5690	TCA cycle II (plants and fungi)
BF39_528	PWY-5913	TCA cycle VI (obligate autotrophs)
BF39_528	PWY-6728	methylaspartate cycle
BF39_528	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_528	PWY-7254	TCA cycle VII (acetate-producers)
BF39_528	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
BF39_5338	PWY-5669	phosphatidylethanolamine biosynthesis I
BF39_539	PWY-2941	L-lysine biosynthesis II
BF39_539	PWY-2942	L-lysine biosynthesis III
BF39_539	PWY-5097	L-lysine biosynthesis VI
BF39_539	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
BF39_539	PWY-6559	spermidine biosynthesis II
BF39_539	PWY-6562	norspermidine biosynthesis
BF39_539	PWY-7153	grixazone biosynthesis
BF39_539	PWY-7977	BF39_539
BF39_5399	PWY-4261	glycerol degradation I
BF39_5400	PWY-4261	glycerol degradation I
BF39_5400	PWY-6118	glycerol-3-phosphate shuttle
BF39_5400	PWY-6952	glycerophosphodiester degradation
BF39_5405	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_5405	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_5405	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_5405	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_5439	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_5439	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_5439	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_5439	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_5440	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
BF39_5440	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
BF39_5440	PWY-7766	BF39_5440
BF39_5442	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
BF39_5458	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
BF39_5458	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
BF39_5492	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_5492	PWY-7118	chitin degradation to ethanol
BF39_5492	PWY-7294	xylose degradation IV
BF39_5492	PWY-7295	L-arabinose degradation IV
BF39_5492	PWY-7854	BF39_5492
BF39_5493	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
BF39_5513	PWY-3341	L-proline biosynthesis III
BF39_5513	PWY-4981	L-proline biosynthesis II (from arginine)
BF39_5513	PWY-6344	L-ornithine degradation II (Stickland reaction)
BF39_5513	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BF39_5537	PWY-4381	fatty acid biosynthesis initiation I
BF39_554	PWY-4381	fatty acid biosynthesis initiation I
BF39_5563	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
BF39_5563	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
BF39_5563	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
BF39_5567	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_5567	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_5567	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_5567	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_5568	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
BF39_5568	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
BF39_5568	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
BF39_5568	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
BF39_5579	PWY-3221	dTDP-L-rhamnose biosynthesis II
BF39_5579	PWY-6808	dTDP-D-forosamine biosynthesis
BF39_5579	PWY-6942	dTDP-D-desosamine biosynthesis
BF39_5579	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
BF39_5579	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
BF39_5579	PWY-6974	dTDP-L-olivose biosynthesis
BF39_5579	PWY-6976	dTDP-L-mycarose biosynthesis
BF39_5579	PWY-7104	dTDP-L-megosamine biosynthesis
BF39_5579	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
BF39_5579	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
BF39_5579	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
BF39_5579	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
BF39_5579	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
BF39_5579	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
BF39_5579	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
BF39_5579	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
BF39_5579	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
BF39_5579	PWY-7688	BF39_5579
BF39_5579	PWY-7814	BF39_5579
BF39_5581	PWY-5971	palmitate biosynthesis II (bacteria and plants)
BF39_5581	PWY-5973	<i>cis</i>-vaccenate biosynthesis
BF39_5581	PWY-5989	stearate biosynthesis II (bacteria and plants)
BF39_5581	PWY-6113	superpathway of mycolate biosynthesis
BF39_5581	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
BF39_5581	PWY-6519	8-amino-7-oxononanoate biosynthesis I
BF39_5581	PWY-7663	gondoate biosynthesis (anaerobic)
BF39_5581	PWY-7664	oleate biosynthesis IV (anaerobic)
BF39_5581	PWY-7858	BF39_5581
BF39_5581	PWYG-321	mycolate biosynthesis
BF39_5595	PWY-5958	acridone alkaloid biosynthesis
BF39_5595	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
BF39_5595	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
BF39_5596	PWY-5958	acridone alkaloid biosynthesis
BF39_5596	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
BF39_5596	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
BF39_560	PWY-6936	seleno-amino acid biosynthesis
BF39_576	PWY-5057	L-valine degradation II
BF39_576	PWY-5076	L-leucine degradation III
BF39_576	PWY-5078	L-isoleucine degradation II
BF39_576	PWY-5101	L-isoleucine biosynthesis II
BF39_576	PWY-5103	L-isoleucine biosynthesis III
BF39_576	PWY-5104	L-isoleucine biosynthesis IV
BF39_576	PWY-5108	L-isoleucine biosynthesis V
BF39_576	PWY-7767	BF39_576
BF39_5768	PWY-3801	sucrose degradation II (sucrose synthase)
BF39_5768	PWY-6527	stachyose degradation
BF39_5768	PWY-7238	sucrose biosynthesis II
BF39_5768	PWY-7343	UDP-glucose biosynthesis
BF39_5768	PWY-7817	BF39_5768
BF39_577	PWY-5101	L-isoleucine biosynthesis II
BF39_577	PWY-5103	L-isoleucine biosynthesis III
BF39_577	PWY-5104	L-isoleucine biosynthesis IV
BF39_577	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
BF39_577	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
BF39_577	PWY-6389	(<i>S</i>)-acetoin biosynthesis
BF39_577	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_5770	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
BF39_5770	PWY-7820	BF39_5770
BF39_579	PWY-5103	L-isoleucine biosynthesis III
BF39_579	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_580	PWY-5101	L-isoleucine biosynthesis II
BF39_580	PWY-5103	L-isoleucine biosynthesis III
BF39_580	PWY-5104	L-isoleucine biosynthesis IV
BF39_580	PWY-7111	pyruvate fermentation to isobutanol (engineered)
BF39_610	PWY-6654	phosphopantothenate biosynthesis III
BF39_619	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
BF39_621	PWY-7181	pyrimidine deoxyribonucleosides degradation
BF39_622	PWY-6556	pyrimidine ribonucleosides salvage II
BF39_622	PWY-7181	pyrimidine deoxyribonucleosides degradation
BF39_622	PWY-7193	pyrimidine ribonucleosides salvage I
BF39_622	PWY-7199	pyrimidine deoxyribonucleosides salvage
BF39_648	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
BF39_650	PWY-5481	pyruvate fermentation to lactate
BF39_650	PWY-6901	superpathway of glucose and xylose degradation
BF39_655	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
BF39_657	PWY-4381	fatty acid biosynthesis initiation I
BF39_690	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
BF39_690	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
BF39_693	PWY-702	L-methionine biosynthesis II
BF39_70	PWY-5676	acetyl-CoA fermentation to butanoate II
BF39_70	PWY-5741	ethylmalonyl-CoA pathway
BF39_70	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
BF39_70	PWY-7948	BF39_70
BF39_747	PWY-0	putrescine degradation III
BF39_747	PWY-6117	spermine and spermidine degradation I
BF39_747	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
BF39_793	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
BF39_800	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
BF39_827	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
BF39_827	PWY-2161	folate polyglutamylation
BF39_827	PWY-2201	folate transformations I
BF39_827	PWY-3841	folate transformations II
BF39_83	PWY-6832	2-aminoethylphosphonate degradation II
BF39_845	PWY-6748	nitrate reduction VII (denitrification)
BF39_846	PWY-6748	nitrate reduction VII (denitrification)
BF39_853	PWY-6823	molybdenum cofactor biosynthesis
BF39_855	PWY-6823	molybdenum cofactor biosynthesis
BF39_856	PWY-6823	molybdenum cofactor biosynthesis
BF39_856	PWY-7887	BF39_856
BF39_861	PWY-5194	siroheme biosynthesis
BF39_861	PWY-5196	factor 430 biosynthesis
BF39_861	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BF39_862	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BF39_863	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
BF39_863	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
BF39_863	PWY-5194	siroheme biosynthesis
BF39_863	PWY-5196	factor 430 biosynthesis
BF39_863	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
BF39_865	PWY-6683	sulfate reduction III (assimilatory)
BF39_938	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
BF39_938	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
BF39_952	PWY-3841	folate transformations II
BF39_952	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
BF39_952	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
BF39_952	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
BF39_952	PWY-7199	pyrimidine deoxyribonucleosides salvage
BF39_952	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
BF39_953	PWY-3841	folate transformations II
BF39_953	PWY-6614	tetrahydrofolate biosynthesis
BF39_956	PWY-5667	CDP-diacylglycerol biosynthesis I
BF39_956	PWY-5981	CDP-diacylglycerol biosynthesis III
BF39_956	PWY-6453	stigma estolide biosynthesis
BF39_956	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
BF39_956	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
BF39_956	PWY-7587	oleate biosynthesis III (cyanobacteria)
BF39_956	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
BF39_956	PWY-7782	BF39_956
