BF39_100 SM00387 Histidine kinase-like ATPases BF39_100 SM00388 His Kinase A (phosphoacceptor) domain BF39_1004 SM01091 Transporter associated domain BF39_1007 SM00387 Histidine kinase-like ATPases BF39_1007 SM00388 His Kinase A (phosphoacceptor) domain BF39_1010 SM00882 Coenzyme A transferase BF39_1011 SM00882 Coenzyme A transferase BF39_1014 SM00382 ATPases associated with a variety of cellular activities BF39_1022 SM00219 Tyrosine kinase, catalytic domain BF39_1025 SM00014 Acid phosphatase homologues BF39_1027 SM00860 SMI1 / KNR4 family BF39_1032 SM00530 Helix-turn-helix XRE-family like proteins BF39_1043 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF39_1072 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_1079 SM00823 Phosphopantetheine attachment site BF39_1079 SM00824 Thioesterase BF39_1080 SM00923 MbtH-like protein BF39_1084 SM00411 bacterial (prokaryotic) histone like domain BF39_1092 SM00363 S4 RNA-binding domain BF39_1093 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF39_1107 SM00849 Metallo-beta-lactamase superfamily BF39_1113 SM00849 Metallo-beta-lactamase superfamily BF39_1117 SM01059 Chloramphenicol acetyltransferase BF39_1122 SM00530 Helix-turn-helix XRE-family like proteins BF39_1130 SM00357 Cold shock protein domain BF39_114 SM00465 GIY-YIG type nucleases (URI domain) BF39_114 SM00496 Intron-encoded nuclease repeat 2 BF39_1143 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF39_1150 SM00382 ATPases associated with a variety of cellular activities BF39_1151 SM00382 ATPases associated with a variety of cellular activities BF39_1153 SM00646 BF39_1153 BF39_1155 SM00530 Helix-turn-helix XRE-family like proteins BF39_117 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1171 SM01207 BF39_1171 BF39_1175 SM00849 Metallo-beta-lactamase superfamily BF39_1178 SM00487 DEAD-like helicases superfamily BF39_1178 SM00490 helicase superfamily c-terminal domain BF39_118 SM00382 ATPases associated with a variety of cellular activities BF39_1183 SM00382 ATPases associated with a variety of cellular activities BF39_1188 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_1189 SM00855 Phosphoglycerate mutase family BF39_120 SM00382 ATPases associated with a variety of cellular activities BF39_1206 SM00014 Acid phosphatase homologues BF39_1207 SM00354 helix_turn _helix lactose operon repressor BF39_1223 SM00530 Helix-turn-helix XRE-family like proteins BF39_1228 SM00646 BF39_1228 BF39_1232 SM00382 ATPases associated with a variety of cellular activities BF39_1234 SM00052 Putative diguanylate phosphodiesterase BF39_1234 SM00091 PAS domain BF39_1234 SM00267 diguanylate cyclase BF39_1236 SM00860 SMI1 / KNR4 family BF39_1238 SM00450 Rhodanese Homology Domain BF39_1238 SM00849 Metallo-beta-lactamase superfamily BF39_124 SM00344 helix_turn_helix ASNC type BF39_1241 SM00382 ATPases associated with a variety of cellular activities BF39_1247 SM00878 Biotin carboxylase C-terminal domain BF39_1259 SM00387 Histidine kinase-like ATPases BF39_1259 SM00388 His Kinase A (phosphoacceptor) domain BF39_1260 SM00448 cheY-homologous receiver domain BF39_1260 SM00862 Transcriptional regulatory protein, C terminal BF39_1272 SM00382 ATPases associated with a variety of cellular activities BF39_1276 SM00422 helix_turn_helix, mercury resistance BF39_1276 SM00871 Bacterial transcription activator, effector binding domain BF39_1282 SM00342 helix_turn_helix, arabinose operon control protein BF39_1285 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1296 SM00448 cheY-homologous receiver domain BF39_1296 SM00862 Transcriptional regulatory protein, C terminal BF39_1298 SM00387 Histidine kinase-like ATPases BF39_1300 SM00382 ATPases associated with a variety of cellular activities BF39_1303 SM00382 ATPases associated with a variety of cellular activities BF39_1310 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1311 SM01209 BF39_1311 BF39_1337 SM00091 PAS domain BF39_1337 SM00387 Histidine kinase-like ATPases BF39_1337 SM00388 His Kinase A (phosphoacceptor) domain BF39_1342 SM00382 ATPases associated with a variety of cellular activities BF39_1345 SM00387 Histidine kinase-like ATPases BF39_1345 SM00388 His Kinase A (phosphoacceptor) domain BF39_1348 SM00829 Enoylreductase BF39_1349 SM00740 BF39_1349 BF39_1362 SM00422 helix_turn_helix, mercury resistance BF39_1371 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1382 SM00480 DNA polymerase III beta subunit BF39_1405 SM00465 GIY-YIG type nucleases (URI domain) BF39_1426 SM00642 Alpha-amylase domain BF39_1430 SM00871 Bacterial transcription activator, effector binding domain BF39_1434 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1457 SM00382 ATPases associated with a variety of cellular activities BF39_1461 SM00420 helix_turn_helix, Deoxyribose operon repressor BF39_1461 SM01134 BF39_1461 BF39_1471 SM00861 Transketolase, pyrimidine binding domain BF39_148 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_1482 SM00116 Domain in cystathionine beta-synthase and other proteins. BF39_1482 SM00382 ATPases associated with a variety of cellular activities BF39_1489 SM00060 Fibronectin type 3 domain BF39_1489 SM00495 Chitin-binding domain type 3 BF39_1498 SM00849 Metallo-beta-lactamase superfamily BF39_1512 SM00341 Helicase and RNase D C-terminal BF39_1512 SM00487 DEAD-like helicases superfamily BF39_1512 SM00490 helicase superfamily c-terminal domain BF39_1512 SM00956 BF39_1512 BF39_1520 SM01131 BF39_1520 BF39_1526 SM01130 BF39_1526 BF39_1530 SM00091 PAS domain BF39_1530 SM00382 ATPases associated with a variety of cellular activities BF39_1543 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF39_1551 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF39_1552 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_1552 SM00387 Histidine kinase-like ATPases BF39_1552 SM00388 His Kinase A (phosphoacceptor) domain BF39_1553 SM00448 cheY-homologous receiver domain BF39_1553 SM00862 Transcriptional regulatory protein, C terminal BF39_1592 SM00382 ATPases associated with a variety of cellular activities BF39_1594 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1605 SM00062 Bacterial periplasmic substrate-binding proteins BF39_1606 SM00382 ATPases associated with a variety of cellular activities BF39_1612 SM00028 Tetratricopeptide repeats BF39_162 SM00917 LeuA allosteric (dimerisation) domain BF39_163 SM01329 BF39_163 BF39_1630 SM00382 ATPases associated with a variety of cellular activities BF39_1640 SM00830 Chorismate mutase type II BF39_1648 SM00287 Bacterial SH3 domain homologues BF39_1659 SM00382 ATPases associated with a variety of cellular activities BF39_1664 SM01133 BF39_1664 BF39_1670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_1674 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF39_1677 SM00346 helix_turn_helix isocitrate lyase regulation BF39_1681 SM00098 Alkaline phosphatase homologues BF39_1683 SM00530 Helix-turn-helix XRE-family like proteins BF39_1688 SM00850 LytTr DNA-binding domain BF39_17 SM00861 Transketolase, pyrimidine binding domain BF39_1708 SM01060 BF39_1708 BF39_1719 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_1720 SM00889 Elongation factor G, domain IV BF39_1725 SM00382 ATPases associated with a variety of cellular activities BF39_1726 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1728 SM00382 ATPases associated with a variety of cellular activities BF39_1733 SM00342 helix_turn_helix, arabinose operon control protein BF39_1733 SM00871 Bacterial transcription activator, effector binding domain BF39_1738 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_1743 SM00387 Histidine kinase-like ATPases BF39_1743 SM00388 His Kinase A (phosphoacceptor) domain BF39_1744 SM00448 cheY-homologous receiver domain BF39_1744 SM00862 Transcriptional regulatory protein, C terminal BF39_1771 SM00797 Allophanate hydrolase subunit 2 BF39_1772 SM00796 Allophanate hydrolase subunit 1 BF39_1773 SM00346 helix_turn_helix isocitrate lyase regulation BF39_1777 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_1790 SM00849 Metallo-beta-lactamase superfamily BF39_18 SM00530 Helix-turn-helix XRE-family like proteins BF39_1808 SM00870 BF39_1808 BF39_1809 SM00530 Helix-turn-helix XRE-family like proteins BF39_1816 SM00919 Malic enzyme, NAD binding domain BF39_1816 SM01274 BF39_1816 BF39_1822 SM00448 cheY-homologous receiver domain BF39_1823 SM00387 Histidine kinase-like ATPases BF39_1834 SM01060 BF39_1834 BF39_1861 SM00382 ATPases associated with a variety of cellular activities BF39_1866 SM00226 Low molecular weight phosphatase family BF39_1869 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_1872 SM00028 Tetratricopeptide repeats BF39_1876 SM00344 helix_turn_helix ASNC type BF39_1889 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_1896 SM00448 cheY-homologous receiver domain BF39_1896 SM00862 Transcriptional regulatory protein, C terminal BF39_1897 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_1897 SM00387 Histidine kinase-like ATPases BF39_1897 SM00388 His Kinase A (phosphoacceptor) domain BF39_1908 SM00530 Helix-turn-helix XRE-family like proteins BF39_1918 SM00382 ATPases associated with a variety of cellular activities BF39_1920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_1922 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_1922 SM00387 Histidine kinase-like ATPases BF39_1922 SM00388 His Kinase A (phosphoacceptor) domain BF39_1923 SM00448 cheY-homologous receiver domain BF39_1923 SM00862 Transcriptional regulatory protein, C terminal BF39_1925 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_1944 SM00354 helix_turn _helix lactose operon repressor BF39_1945 SM00028 Tetratricopeptide repeats BF39_1952 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_1952 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_1953 SM00319 Homologues of the ligand binding domain of Tar BF39_1958 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF39_1964 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_1972 SM00344 helix_turn_helix ASNC type BF39_1984 SM00342 helix_turn_helix, arabinose operon control protein BF39_1987 SM00287 Bacterial SH3 domain homologues BF39_199 SM00387 Histidine kinase-like ATPases BF39_1997 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_200 SM00421 helix_turn_helix, Lux Regulon BF39_200 SM00448 cheY-homologous receiver domain BF39_2002 SM00382 ATPases associated with a variety of cellular activities BF39_2004 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_2017 SM00382 ATPases associated with a variety of cellular activities BF39_2026 SM00530 Helix-turn-helix XRE-family like proteins BF39_2027 SM01207 BF39_2027 BF39_2039 SM00382 ATPases associated with a variety of cellular activities BF39_2042 SM00530 Helix-turn-helix XRE-family like proteins BF39_2054 SM01266 BF39_2054 BF39_2056 SM00382 ATPases associated with a variety of cellular activities BF39_2067 SM00028 Tetratricopeptide repeats BF39_2072 SM01091 Transporter associated domain BF39_2073 SM00422 helix_turn_helix, mercury resistance BF39_2081 SM01350 BF39_2081 BF39_2082 SM00861 Transketolase, pyrimidine binding domain BF39_2085 SM00829 Enoylreductase BF39_2088 SM00829 Enoylreductase BF39_2091 SM01276 BF39_2091 BF39_2100 SM00914 BF39_2100 BF39_2106 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_2106 SM00866 BF39_2106 BF39_2114 SM00849 Metallo-beta-lactamase superfamily BF39_2127 SM00248 ankyrin repeats BF39_2128 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_2129 SM00636 BF39_2129 BF39_2137 SM00871 Bacterial transcription activator, effector binding domain BF39_2141 SM00382 ATPases associated with a variety of cellular activities BF39_2147 SM00849 Metallo-beta-lactamase superfamily BF39_2148 SM00641 Glycosyl hydrolases family 25 BF39_2161 SM00849 Metallo-beta-lactamase superfamily BF39_2162 SM00829 Enoylreductase BF39_217 SM00091 PAS domain BF39_217 SM00387 Histidine kinase-like ATPases BF39_217 SM00388 His Kinase A (phosphoacceptor) domain BF39_2187 SM00829 Enoylreductase BF39_2188 SM00855 Phosphoglycerate mutase family BF39_2190 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF39_2190 SM00534 ATPase domain of DNA mismatch repair MUTS family BF39_2192 SM00642 Alpha-amylase domain BF39_2205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_2206 SM00829 Enoylreductase BF39_2208 SM00028 Tetratricopeptide repeats BF39_221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_221 SM00387 Histidine kinase-like ATPases BF39_221 SM00388 His Kinase A (phosphoacceptor) domain BF39_2223 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF39_2232 SM00479 BF39_2232 BF39_2233 SM00357 Cold shock protein domain BF39_2238 SM01022 BF39_2238 BF39_2260 SM00852 Probable molybdopterin binding domain BF39_2263 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_2267 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF39_2267 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF39_2288 SM00382 ATPases associated with a variety of cellular activities BF39_2291 SM00434 DNA Topoisomerase IV BF39_2292 SM00387 Histidine kinase-like ATPases BF39_2292 SM00433 TopoisomeraseII BF39_2293 SM00881 CoA binding domain BF39_2294 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF39_2295 SM00448 cheY-homologous receiver domain BF39_2295 SM00862 Transcriptional regulatory protein, C terminal BF39_2298 SM01207 BF39_2298 BF39_2301 SM00257 Lysin motif BF39_2301 SM00636 BF39_2301 BF39_2305 SM00479 BF39_2305 BF39_2308 SM00382 ATPases associated with a variety of cellular activities BF39_2317 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF39_232 SM00363 S4 RNA-binding domain BF39_2330 SM00644 BF39_2330 BF39_2330 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF39_2331 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF39_2334 SM00091 PAS domain BF39_2334 SM00387 Histidine kinase-like ATPases BF39_2334 SM00388 His Kinase A (phosphoacceptor) domain BF39_2340 SM01058 CarD-like/TRCF domain BF39_236 SM00448 cheY-homologous receiver domain BF39_236 SM00862 Transcriptional regulatory protein, C terminal BF39_2366 SM00644 BF39_2366 BF39_2369 SM00382 ATPases associated with a variety of cellular activities BF39_237 SM00091 PAS domain BF39_237 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_237 SM00387 Histidine kinase-like ATPases BF39_237 SM00388 His Kinase A (phosphoacceptor) domain BF39_2370 SM00382 ATPases associated with a variety of cellular activities BF39_2373 SM00861 Transketolase, pyrimidine binding domain BF39_2377 SM00382 ATPases associated with a variety of cellular activities BF39_2378 SM00062 Bacterial periplasmic substrate-binding proteins BF39_2382 SM00857 Resolvase, N terminal domain BF39_2388 SM00028 Tetratricopeptide repeats BF39_239 SM00257 Lysin motif BF39_2394 SM00287 Bacterial SH3 domain homologues BF39_2394 SM00644 BF39_2394 BF39_2425 SM00530 Helix-turn-helix XRE-family like proteins BF39_244 SM00487 DEAD-like helicases superfamily BF39_244 SM00490 helicase superfamily c-terminal domain BF39_2440 SM00382 ATPases associated with a variety of cellular activities BF39_2450 SM00530 Helix-turn-helix XRE-family like proteins BF39_2451 SM00530 Helix-turn-helix XRE-family like proteins BF39_2456 SM01230 BF39_2456 BF39_2457 SM00422 helix_turn_helix, mercury resistance BF39_246 SM00257 Lysin motif BF39_2462 SM00382 ATPases associated with a variety of cellular activities BF39_2469 SM00287 Bacterial SH3 domain homologues BF39_2472 SM00420 helix_turn_helix, Deoxyribose operon repressor BF39_2472 SM01134 BF39_2472 BF39_2479 SM00636 BF39_2479 BF39_248 SM00422 helix_turn_helix, mercury resistance BF39_2483 SM00411 bacterial (prokaryotic) histone like domain BF39_2489 SM00382 ATPases associated with a variety of cellular activities BF39_2495 SM00342 helix_turn_helix, arabinose operon control protein BF39_2497 SM00478 endonuclease III BF39_250 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF39_2504 SM00052 Putative diguanylate phosphodiesterase BF39_2504 SM00091 PAS domain BF39_2504 SM00267 diguanylate cyclase BF39_2509 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_2513 SM00148 Phospholipase C, catalytic domain (part); domain X BF39_2515 SM00257 Lysin motif BF39_2521 SM00387 Histidine kinase-like ATPases BF39_2521 SM00388 His Kinase A (phosphoacceptor) domain BF39_2522 SM00448 cheY-homologous receiver domain BF39_2522 SM00862 Transcriptional regulatory protein, C terminal BF39_2525 SM00382 ATPases associated with a variety of cellular activities BF39_2526 SM00853 MutL C terminal dimerisation domain BF39_2526 SM01340 BF39_2526 BF39_2527 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF39_2527 SM00534 ATPase domain of DNA mismatch repair MUTS family BF39_253 SM00644 BF39_253 BF39_2530 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_2536 SM00322 K homology RNA-binding domain BF39_2536 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_2538 SM00382 ATPases associated with a variety of cellular activities BF39_2539 SM00852 Probable molybdopterin binding domain BF39_255 SM00870 BF39_255 BF39_2550 SM00382 ATPases associated with a variety of cellular activities BF39_2552 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_2552 SM00866 BF39_2552 BF39_2553 SM00382 ATPases associated with a variety of cellular activities BF39_2553 SM00843 BF39_2553 BF39_2556 SM00849 Metallo-beta-lactamase superfamily BF39_2557 SM01130 BF39_2557 BF39_2559 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF39_2565 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_2565 SM00322 K homology RNA-binding domain BF39_2566 SM01387 BF39_2566 BF39_2567 SM00904 Riboflavin kinase BF39_2574 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_2574 SM00322 K homology RNA-binding domain BF39_2576 SM00479 BF39_2576 BF39_2576 SM00481 DNA polymerase alpha chain like domain BF39_2578 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF39_258 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_2587 SM00382 ATPases associated with a variety of cellular activities BF39_2587 SM01086 C-terminal, D2-small domain, of ClpB protein BF39_259 SM01240 BF39_259 BF39_2591 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF39_2591 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF39_2591 SM00493 BF39_2591 BF39_2593 SM00881 CoA binding domain BF39_2603 SM00382 ATPases associated with a variety of cellular activities BF39_2603 SM00962 SRP54-type protein, GTPase domain BF39_2603 SM00963 SRP54-type protein, helical bundle domain BF39_2605 SM00382 ATPases associated with a variety of cellular activities BF39_2605 SM00962 SRP54-type protein, GTPase domain BF39_2605 SM00963 SRP54-type protein, helical bundle domain BF39_2606 SM00968 SMC proteins Flexible Hinge Domain BF39_2607 SM00358 Double-stranded RNA binding motif BF39_2607 SM00535 Ribonuclease III family BF39_2609 SM00822 BF39_2609 BF39_2610 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF39_2613 SM00487 DEAD-like helicases superfamily BF39_2613 SM00490 helicase superfamily c-terminal domain BF39_2614 SM01120 BF39_2614 BF39_2614 SM01121 BF39_2614 BF39_2617 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF39_2620 SM00220 Serine/Threonine protein kinases, catalytic domain BF39_2620 SM00740 BF39_2620 BF39_2621 SM00331 Sigma factor PP2C-like phosphatases BF39_2621 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF39_2626 SM00487 DEAD-like helicases superfamily BF39_2626 SM00490 helicase superfamily c-terminal domain BF39_2628 SM01409 BF39_2628 BF39_2629 SM00072 Guanylate kinase homologues. BF39_2632 SM00831 Cation transporter/ATPase, N-terminus BF39_2641 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF39_2644 SM00851 MGS-like domain BF39_2644 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF39_2644 SM01209 BF39_2644 BF39_2645 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF39_2650 SM00363 S4 RNA-binding domain BF39_2655 SM00363 S4 RNA-binding domain BF39_2664 SM00864 Tubulin/FtsZ family, GTPase domain BF39_2664 SM00865 Tubulin/FtsZ family, C-terminal domain BF39_2665 SM00842 Cell division protein FtsA BF39_2673 SM00740 BF39_2673 BF39_2674 SM00740 BF39_2674 BF39_2680 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF39_2688 SM00530 Helix-turn-helix XRE-family like proteins BF39_2691 SM00644 BF39_2691 BF39_270 SM00411 bacterial (prokaryotic) histone like domain BF39_2713 SM00507 HNH nucleases BF39_2722 SM00530 Helix-turn-helix XRE-family like proteins BF39_2736 SM00382 ATPases associated with a variety of cellular activities BF39_2741 SM00530 Helix-turn-helix XRE-family like proteins BF39_2742 SM00530 Helix-turn-helix XRE-family like proteins BF39_2746 SM00530 Helix-turn-helix XRE-family like proteins BF39_275 SM00562 BF39_275 BF39_2752 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF39_2761 SM00855 Phosphoglycerate mutase family BF39_2774 SM00878 Biotin carboxylase C-terminal domain BF39_2778 SM00670 Large family of predicted nucleotide-binding domains BF39_2783 SM00838 Elongation factor G C-terminus BF39_279 SM00028 Tetratricopeptide repeats BF39_2799 SM00861 Transketolase, pyrimidine binding domain BF39_280 SM00914 BF39_280 BF39_2805 SM00849 Metallo-beta-lactamase superfamily BF39_2818 SM00052 Putative diguanylate phosphodiesterase BF39_2826 SM00267 diguanylate cyclase BF39_2835 SM00387 Histidine kinase-like ATPases BF39_2835 SM00388 His Kinase A (phosphoacceptor) domain BF39_2838 SM00354 helix_turn _helix lactose operon repressor BF39_2842 SM00642 Alpha-amylase domain BF39_2843 SM00642 Alpha-amylase domain BF39_2844 SM00382 ATPases associated with a variety of cellular activities BF39_2851 SM00382 ATPases associated with a variety of cellular activities BF39_2868 SM01007 Class II Aldolase and Adducin N-terminal domain BF39_2874 SM00267 diguanylate cyclase BF39_2881 SM01061 CAT RNA binding domain BF39_2883 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_2883 SM00866 BF39_2883 BF39_2886 SM00849 Metallo-beta-lactamase superfamily BF39_289 SM00986 Uracil DNA glycosylase superfamily BF39_289 SM00987 UreE urease accessory protein, C-terminal domain BF39_2905 SM00387 Histidine kinase-like ATPases BF39_2907 SM00936 Penicillin-binding protein 5, C-terminal domain BF39_2908 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_2909 SM00382 ATPases associated with a variety of cellular activities BF39_2912 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_2916 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF39_293 SM00851 MGS-like domain BF39_2935 SM00354 helix_turn _helix lactose operon repressor BF39_2939 SM00704 CDGSH-type zinc finger. Function unknown. BF39_2945 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_2945 SM00876 Biotin and Thiamin Synthesis associated domain BF39_2955 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_2962 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF39_2970 SM00849 Metallo-beta-lactamase superfamily BF39_2979 SM00382 ATPases associated with a variety of cellular activities BF39_2981 SM00062 Bacterial periplasmic substrate-binding proteins BF39_2981 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF39_2987 SM00861 Transketolase, pyrimidine binding domain BF39_2991 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF39_2993 SM00091 PAS domain BF39_2993 SM00382 ATPases associated with a variety of cellular activities BF39_2998 SM00448 cheY-homologous receiver domain BF39_2999 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF39_3002 SM00363 S4 RNA-binding domain BF39_3003 SM00861 Transketolase, pyrimidine binding domain BF39_3010 SM00878 Biotin carboxylase C-terminal domain BF39_302 SM00479 BF39_302 BF39_302 SM00487 DEAD-like helicases superfamily BF39_302 SM00491 BF39_302 BF39_3020 SM00382 ATPases associated with a variety of cellular activities BF39_3024 SM00841 Elongation factor P, C-terminal BF39_3024 SM01185 BF39_3024 BF39_3031 SM00529 Helix-turn-helix diphteria tox regulatory element BF39_3035 SM00450 Rhodanese Homology Domain BF39_3036 SM00354 helix_turn _helix lactose operon repressor BF39_3046 SM00382 ATPases associated with a variety of cellular activities BF39_3047 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_3053 SM00487 DEAD-like helicases superfamily BF39_3053 SM00490 helicase superfamily c-terminal domain BF39_3060 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF39_3067 SM00382 ATPases associated with a variety of cellular activities BF39_307 SM00478 endonuclease III BF39_307 SM00525 BF39_307 BF39_3078 SM01018 B12 binding domain BF39_3083 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_3085 SM00849 Metallo-beta-lactamase superfamily BF39_309 SM00060 Fibronectin type 3 domain BF39_3094 SM00382 ATPases associated with a variety of cellular activities BF39_3107 SM00382 ATPases associated with a variety of cellular activities BF39_3110 SM00518 AP endonuclease family 2 BF39_3111 SM00487 DEAD-like helicases superfamily BF39_3111 SM00490 helicase superfamily c-terminal domain BF39_3118 SM00400 zinc finger BF39_3118 SM00493 BF39_3118 BF39_3118 SM00766 DNA primase DnaG DnaB-binding BF39_3120 SM00116 Domain in cystathionine beta-synthase and other proteins. BF39_3127 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_3133 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_3136 SM00271 DnaJ molecular chaperone homology domain BF39_3140 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_3142 SM00838 Elongation factor G C-terminus BF39_3148 SM00849 Metallo-beta-lactamase superfamily BF39_3150 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF39_3154 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_3156 SM01103 BF39_3156 BF39_3168 SM00954 Region found in RelA / SpoT proteins BF39_3170 SM00098 Alkaline phosphatase homologues BF39_3175 SM00855 Phosphoglycerate mutase family BF39_3185 SM00530 Helix-turn-helix XRE-family like proteins BF39_3190 SM00382 ATPases associated with a variety of cellular activities BF39_320 SM00981 BF39_320 BF39_3209 SM00732 Likely ribonuclease with RNase H fold. BF39_3211 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF39_3218 SM00028 Tetratricopeptide repeats BF39_322 SM00491 BF39_322 BF39_3222 SM00382 ATPases associated with a variety of cellular activities BF39_3229 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_3229 SM00954 Region found in RelA / SpoT proteins BF39_3238 SM01323 BF39_3238 BF39_3242 SM00382 ATPases associated with a variety of cellular activities BF39_3243 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF39_3248 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_3251 SM00257 Lysin motif BF39_3261 SM00382 ATPases associated with a variety of cellular activities BF39_3262 SM00387 Histidine kinase-like ATPases BF39_3264 SM00448 cheY-homologous receiver domain BF39_3264 SM00862 Transcriptional regulatory protein, C terminal BF39_3266 SM01317 BF39_3266 BF39_3284 SM00257 Lysin motif BF39_3286 SM01004 Delta-aminolevulinic acid dehydratase BF39_3291 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_3294 SM00382 ATPases associated with a variety of cellular activities BF39_3294 SM00464 Found in ATP-dependent protease La (LON) BF39_3295 SM00382 ATPases associated with a variety of cellular activities BF39_3296 SM00382 ATPases associated with a variety of cellular activities BF39_3296 SM00994 ClpX C4-type zinc finger BF39_3296 SM01086 C-terminal, D2-small domain, of ClpB protein BF39_3308 SM00909 Sporulation and spore germination BF39_3315 SM00421 helix_turn_helix, Lux Regulon BF39_3323 SM00382 ATPases associated with a variety of cellular activities BF39_3324 SM00382 ATPases associated with a variety of cellular activities BF39_3326 SM00342 helix_turn_helix, arabinose operon control protein BF39_3326 SM00448 cheY-homologous receiver domain BF39_3330 SM00530 Helix-turn-helix XRE-family like proteins BF39_3335 SM00382 ATPases associated with a variety of cellular activities BF39_3346 SM00465 GIY-YIG type nucleases (URI domain) BF39_3348 SM00893 Electron transfer flavoprotein domain BF39_3349 SM00893 Electron transfer flavoprotein domain BF39_335 SM00450 Rhodanese Homology Domain BF39_3362 SM00382 ATPases associated with a variety of cellular activities BF39_3363 SM00387 Histidine kinase-like ATPases BF39_3363 SM00388 His Kinase A (phosphoacceptor) domain BF39_3364 SM00448 cheY-homologous receiver domain BF39_3364 SM00862 Transcriptional regulatory protein, C terminal BF39_3367 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF39_3371 SM00382 ATPases associated with a variety of cellular activities BF39_3374 SM00725 NEAr Transporter domain BF39_3375 SM00725 NEAr Transporter domain BF39_3376 SM00725 NEAr Transporter domain BF39_3378 SM00363 S4 RNA-binding domain BF39_3380 SM00463 Small MutS-related domain BF39_3380 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF39_3380 SM00534 ATPase domain of DNA mismatch repair MUTS family BF39_3381 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF39_3381 SM00481 DNA polymerase alpha chain like domain BF39_3381 SM00483 DNA polymerase X family BF39_3389 SM00873 B3/4 domain BF39_3389 SM00874 tRNA synthetase B5 domain BF39_3389 SM00896 Ferredoxin-fold anticodon binding domain BF39_3391 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF39_3406 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF39_3408 SM00382 ATPases associated with a variety of cellular activities BF39_341 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF39_341 SM00475 5'-3' exonuclease BF39_3412 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF39_3415 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF39_3415 SM01232 BF39_3415 BF39_3416 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF39_3416 SM00474 3'-5' exonuclease BF39_3416 SM00475 5'-3' exonuclease BF39_3416 SM00482 DNA polymerase A domain BF39_3417 SM00091 PAS domain BF39_3417 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_3417 SM00387 Histidine kinase-like ATPases BF39_3417 SM00388 His Kinase A (phosphoacceptor) domain BF39_3418 SM00448 cheY-homologous receiver domain BF39_3418 SM00862 Transcriptional regulatory protein, C terminal BF39_3422 SM01329 BF39_3422 BF39_3431 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_3432 SM00919 Malic enzyme, NAD binding domain BF39_3432 SM01274 BF39_3432 BF39_3433 SM00481 DNA polymerase alpha chain like domain BF39_3440 SM00116 Domain in cystathionine beta-synthase and other proteins. BF39_3442 SM00849 Metallo-beta-lactamase superfamily BF39_3453 SM00530 Helix-turn-helix XRE-family like proteins BF39_3455 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF39_3455 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF39_3480 SM00981 BF39_3480 BF39_3489 SM00363 S4 RNA-binding domain BF39_3489 SM01390 BF39_3489 BF39_3492 SM00363 S4 RNA-binding domain BF39_3498 SM00116 Domain in cystathionine beta-synthase and other proteins. BF39_3501 SM00448 cheY-homologous receiver domain BF39_3501 SM00862 Transcriptional regulatory protein, C terminal BF39_3502 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_3502 SM00387 Histidine kinase-like ATPases BF39_3502 SM00388 His Kinase A (phosphoacceptor) domain BF39_3503 SM00248 ankyrin repeats BF39_3510 SM00354 helix_turn _helix lactose operon repressor BF39_3521 SM00843 BF39_3521 BF39_3530 SM00849 Metallo-beta-lactamase superfamily BF39_3534 SM00642 Alpha-amylase domain BF39_3538 SM00420 helix_turn_helix, Deoxyribose operon repressor BF39_3539 SM00363 S4 RNA-binding domain BF39_3543 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_3548 SM01058 CarD-like/TRCF domain BF39_3555 SM00852 Probable molybdopterin binding domain BF39_3558 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_3562 SM00450 Rhodanese Homology Domain BF39_3577 SM00382 ATPases associated with a variety of cellular activities BF39_3581 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_3583 SM00382 ATPases associated with a variety of cellular activities BF39_3591 SM00014 Acid phosphatase homologues BF39_3594 SM00852 Probable molybdopterin binding domain BF39_36 SM00530 Helix-turn-helix XRE-family like proteins BF39_3605 SM00387 Histidine kinase-like ATPases BF39_3606 SM00387 Histidine kinase-like ATPases BF39_3606 SM00388 His Kinase A (phosphoacceptor) domain BF39_3613 SM00382 ATPases associated with a variety of cellular activities BF39_3625 SM00947 Carbonic anhydrase BF39_3626 SM01234 BF39_3626 BF39_3630 SM00894 Excalibur calcium-binding domain BF39_3642 SM00899 BF39_3642 BF39_3644 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_3644 SM00387 Histidine kinase-like ATPases BF39_3644 SM00388 His Kinase A (phosphoacceptor) domain BF39_3645 SM00448 cheY-homologous receiver domain BF39_3645 SM00862 Transcriptional regulatory protein, C terminal BF39_365 SM00357 Cold shock protein domain BF39_3651 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF39_3661 SM00382 ATPases associated with a variety of cellular activities BF39_3662 SM00342 helix_turn_helix, arabinose operon control protein BF39_3662 SM00871 Bacterial transcription activator, effector binding domain BF39_3663 SM00448 cheY-homologous receiver domain BF39_3663 SM00862 Transcriptional regulatory protein, C terminal BF39_3664 SM00387 Histidine kinase-like ATPases BF39_3668 SM00382 ATPases associated with a variety of cellular activities BF39_3673 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_3673 SM00866 BF39_3673 BF39_3681 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_3681 SM00387 Histidine kinase-like ATPases BF39_3681 SM00388 His Kinase A (phosphoacceptor) domain BF39_3682 SM00448 cheY-homologous receiver domain BF39_3682 SM00862 Transcriptional regulatory protein, C terminal BF39_3683 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF39_3691 SM00357 Cold shock protein domain BF39_3733 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_3735 SM00344 helix_turn_helix ASNC type BF39_3742 SM01298 BF39_3742 BF39_3743 SM00479 BF39_3743 BF39_375 SM00849 Metallo-beta-lactamase superfamily BF39_376 SM00422 helix_turn_helix, mercury resistance BF39_376 SM00871 Bacterial transcription activator, effector binding domain BF39_3762 SM00871 Bacterial transcription activator, effector binding domain BF39_3772 SM00382 ATPases associated with a variety of cellular activities BF39_3777 SM00860 SMI1 / KNR4 family BF39_3790 SM00420 helix_turn_helix, Deoxyribose operon repressor BF39_3797 SM00422 helix_turn_helix, mercury resistance BF39_3800 SM00855 Phosphoglycerate mutase family BF39_3802 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_3813 SM00382 ATPases associated with a variety of cellular activities BF39_3817 SM00382 ATPases associated with a variety of cellular activities BF39_3817 SM00930 BF39_3817 BF39_3820 SM00493 BF39_3820 BF39_3837 SM00849 Metallo-beta-lactamase superfamily BF39_3846 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_3846 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_3860 SM00530 Helix-turn-helix XRE-family like proteins BF39_3865 SM00448 cheY-homologous receiver domain BF39_3865 SM00862 Transcriptional regulatory protein, C terminal BF39_3866 SM00387 Histidine kinase-like ATPases BF39_3866 SM00388 His Kinase A (phosphoacceptor) domain BF39_3870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_3870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_3874 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_3894 SM01276 BF39_3894 BF39_39 SM00382 ATPases associated with a variety of cellular activities BF39_3901 SM00363 S4 RNA-binding domain BF39_3903 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF39_3904 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_3914 SM00382 ATPases associated with a variety of cellular activities BF39_3918 SM00448 cheY-homologous receiver domain BF39_3918 SM00862 Transcriptional regulatory protein, C terminal BF39_3920 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_3920 SM00357 Cold shock protein domain BF39_3920 SM00955 BF39_3920 BF39_394 SM00448 cheY-homologous receiver domain BF39_3948 SM01192 BF39_3948 BF39_3948 SM01193 BF39_3948 BF39_395 SM00073 Histidine Phosphotransfer domain BF39_3952 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF39_396 SM00260 Two component signalling adaptor domain BF39_396 SM00387 Histidine kinase-like ATPases BF39_396 SM01231 BF39_396 BF39_3972 SM00028 Tetratricopeptide repeats BF39_3980 SM00487 DEAD-like helicases superfamily BF39_3980 SM00490 helicase superfamily c-terminal domain BF39_3984 SM00422 helix_turn_helix, mercury resistance BF39_3987 SM00530 Helix-turn-helix XRE-family like proteins BF39_3990 SM00422 helix_turn_helix, mercury resistance BF39_3992 SM00382 ATPases associated with a variety of cellular activities BF39_3994 SM00382 ATPases associated with a variety of cellular activities BF39_3996 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF39_3996 SM00245 tail specific protease BF39_3998 SM00382 ATPases associated with a variety of cellular activities BF39_400 SM00138 Methyltransferase, chemotaxis proteins BF39_4000 SM00937 BF39_4000 BF39_4001 SM00957 SecA DEAD-like domain BF39_4001 SM00958 SecA preprotein cross-linking domain BF39_4003 SM00357 Cold shock protein domain BF39_4005 SM00487 DEAD-like helicases superfamily BF39_4005 SM00490 helicase superfamily c-terminal domain BF39_4012 SM00984 UDP binding domain BF39_4015 SM00382 ATPases associated with a variety of cellular activities BF39_4016 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF39_4046 SM00287 Bacterial SH3 domain homologues BF39_4047 SM00287 Bacterial SH3 domain homologues BF39_4053 SM00287 Bacterial SH3 domain homologues BF39_4059 SM00487 DEAD-like helicases superfamily BF39_4059 SM00490 helicase superfamily c-terminal domain BF39_4068 SM00382 ATPases associated with a variety of cellular activities BF39_4070 SM00530 Helix-turn-helix XRE-family like proteins BF39_4075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4075 SM00387 Histidine kinase-like ATPases BF39_4075 SM00388 His Kinase A (phosphoacceptor) domain BF39_4076 SM00448 cheY-homologous receiver domain BF39_4076 SM00862 Transcriptional regulatory protein, C terminal BF39_4081 SM00287 Bacterial SH3 domain homologues BF39_4081 SM00382 ATPases associated with a variety of cellular activities BF39_4083 SM00984 UDP binding domain BF39_4095 SM00382 ATPases associated with a variety of cellular activities BF39_4096 SM00850 LytTr DNA-binding domain BF39_4113 SM00052 Putative diguanylate phosphodiesterase BF39_4113 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF39_4113 SM00091 PAS domain BF39_4113 SM00267 diguanylate cyclase BF39_4117 SM00382 ATPases associated with a variety of cellular activities BF39_4130 SM00226 Low molecular weight phosphatase family BF39_4133 SM00903 Flavin reductase like domain BF39_4140 SM00937 BF39_4140 BF39_4143 SM00357 Cold shock protein domain BF39_4143 SM00382 ATPases associated with a variety of cellular activities BF39_4143 SM00959 Rho termination factor, N-terminal domain BF39_4147 SM00448 cheY-homologous receiver domain BF39_4157 SM00155 Phospholipase D. Active site motifs. BF39_4159 SM00052 Putative diguanylate phosphodiesterase BF39_4159 SM00267 diguanylate cyclase BF39_4162 SM00530 Helix-turn-helix XRE-family like proteins BF39_4163 SM00421 helix_turn_helix, Lux Regulon BF39_4163 SM00448 cheY-homologous receiver domain BF39_4164 SM00387 Histidine kinase-like ATPases BF39_4166 SM00382 ATPases associated with a variety of cellular activities BF39_4176 SM00836 DALR anticodon binding domain BF39_4176 SM01016 Arginyl tRNA synthetase N terminal dom BF39_418 SM00382 ATPases associated with a variety of cellular activities BF39_4184 SM00422 helix_turn_helix, mercury resistance BF39_4190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_4192 SM00382 ATPases associated with a variety of cellular activities BF39_4202 SM00936 Penicillin-binding protein 5, C-terminal domain BF39_4211 SM00986 Uracil DNA glycosylase superfamily BF39_4211 SM00987 UreE urease accessory protein, C-terminal domain BF39_4213 SM00382 ATPases associated with a variety of cellular activities BF39_4215 SM00354 helix_turn _helix lactose operon repressor BF39_4222 SM00100 Cyclic nucleotide-monophosphate binding domain BF39_4224 SM00421 helix_turn_helix, Lux Regulon BF39_4224 SM00448 cheY-homologous receiver domain BF39_4226 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF39_4228 SM00267 diguanylate cyclase BF39_4231 SM00448 cheY-homologous receiver domain BF39_4231 SM00850 LytTr DNA-binding domain BF39_4237 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_4242 SM00382 ATPases associated with a variety of cellular activities BF39_4254 SM00448 cheY-homologous receiver domain BF39_4254 SM00850 LytTr DNA-binding domain BF39_4255 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF39_4255 SM00387 Histidine kinase-like ATPases BF39_4266 SM00487 DEAD-like helicases superfamily BF39_4266 SM00490 helicase superfamily c-terminal domain BF39_4268 SM01240 BF39_4268 BF39_427 SM00260 Two component signalling adaptor domain BF39_427 SM00448 cheY-homologous receiver domain BF39_4273 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF39_4274 SM00849 Metallo-beta-lactamase superfamily BF39_4277 SM00091 PAS domain BF39_4277 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4277 SM00387 Histidine kinase-like ATPases BF39_4277 SM00388 His Kinase A (phosphoacceptor) domain BF39_4278 SM00448 cheY-homologous receiver domain BF39_4278 SM00862 Transcriptional regulatory protein, C terminal BF39_4283 SM00788 Adenylosuccinate synthetase BF39_4286 SM00267 diguanylate cyclase BF39_4295 SM00470 ParB-like nuclease domain BF39_4297 SM00470 ParB-like nuclease domain BF39_4299 SM01228 BF39_4299 BF39_43 SM00014 Acid phosphatase homologues BF39_4301 SM00393 Putative single-stranded nucleic acids-binding domain BF39_4301 SM01245 BF39_4301 BF39_4305 SM00382 ATPases associated with a variety of cellular activities BF39_4305 SM00760 Bacterial dnaA protein helix-turn-helix domain BF39_4306 SM00480 DNA polymerase III beta subunit BF39_4309 SM00387 Histidine kinase-like ATPases BF39_4309 SM00433 TopoisomeraseII BF39_4310 SM00434 DNA Topoisomerase IV BF39_4316 SM00116 Domain in cystathionine beta-synthase and other proteins. BF39_4316 SM01240 BF39_4316 BF39_4317 SM00936 Penicillin-binding protein 5, C-terminal domain BF39_4327 SM00382 ATPases associated with a variety of cellular activities BF39_4329 SM00493 BF39_4329 BF39_433 SM00028 Tetratricopeptide repeats BF39_4345 SM00966 SpoVT / AbrB like domain BF39_4348 SM00493 BF39_4348 BF39_4349 SM00650 Ribosomal RNA adenine dimethylases BF39_4358 SM01400 BF39_4358 BF39_436 SM00028 Tetratricopeptide repeats BF39_4361 SM00487 DEAD-like helicases superfamily BF39_4361 SM00490 helicase superfamily c-terminal domain BF39_4361 SM00982 BF39_4361 BF39_4361 SM01058 CarD-like/TRCF domain BF39_4362 SM00966 SpoVT / AbrB like domain BF39_4365 SM00363 S4 RNA-binding domain BF39_4369 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_4372 SM00331 Sigma factor PP2C-like phosphatases BF39_4372 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF39_4374 SM00977 TilS substrate C-terminal domain BF39_4376 SM00382 ATPases associated with a variety of cellular activities BF39_4384 SM00905 Dihydroneopterin aldolase BF39_4386 SM00530 Helix-turn-helix XRE-family like proteins BF39_4396 SM00382 ATPases associated with a variety of cellular activities BF39_4396 SM01086 C-terminal, D2-small domain, of ClpB protein BF39_4397 SM00382 ATPases associated with a variety of cellular activities BF39_4399 SM00670 Large family of predicted nucleotide-binding domains BF39_4404 SM00840 BF39_4404 BF39_4405 SM00535 Ribonuclease III family BF39_4406 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF39_4408 SM00421 helix_turn_helix, Lux Regulon BF39_4410 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF39_4411 SM00649 Ribosomal protein L11/L12 BF39_4417 SM00663 RNA polymerase I subunit A N-terminus BF39_4421 SM00838 Elongation factor G C-terminus BF39_4421 SM00889 Elongation factor G, domain IV BF39_4423 SM01403 BF39_4423 BF39_4427 SM01382 BF39_4427 BF39_4427 SM01383 BF39_4427 BF39_4430 SM00322 K homology RNA-binding domain BF39_4434 SM01374 BF39_4434 BF39_4435 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF39_4447 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_4451 SM00662 RNA polymerases D BF39_4453 SM00382 ATPases associated with a variety of cellular activities BF39_4461 SM00646 BF39_4461 BF39_4464 SM01251 BF39_4464 BF39_4488 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_4488 SM00895 BF39_4488 BF39_4492 SM01350 BF39_4492 BF39_4503 SM00382 ATPases associated with a variety of cellular activities BF39_4503 SM00930 BF39_4503 BF39_4505 SM00829 Enoylreductase BF39_451 SM00382 ATPases associated with a variety of cellular activities BF39_451 SM00962 SRP54-type protein, GTPase domain BF39_4515 SM00382 ATPases associated with a variety of cellular activities BF39_4516 SM00382 ATPases associated with a variety of cellular activities BF39_4519 SM00342 helix_turn_helix, arabinose operon control protein BF39_453 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF39_4538 SM00563 Phosphate acyltransferases BF39_4540 SM00354 helix_turn _helix lactose operon repressor BF39_4550 SM00382 ATPases associated with a variety of cellular activities BF39_4556 SM00382 ATPases associated with a variety of cellular activities BF39_4557 SM00382 ATPases associated with a variety of cellular activities BF39_4572 SM00487 DEAD-like helicases superfamily BF39_4572 SM00490 helicase superfamily c-terminal domain BF39_4577 SM01005 Alanine racemase, C-terminal domain BF39_4580 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_4580 SM00732 Likely ribonuclease with RNase H fold. BF39_4581 SM00731 SprT homologues. BF39_4603 SM00382 ATPases associated with a variety of cellular activities BF39_4604 SM00881 CoA binding domain BF39_4607 SM00883 Chaperonin 10 Kd subunit BF39_4611 SM00448 cheY-homologous receiver domain BF39_4611 SM00862 Transcriptional regulatory protein, C terminal BF39_4612 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4612 SM00387 Histidine kinase-like ATPases BF39_4612 SM00388 His Kinase A (phosphoacceptor) domain BF39_4634 SM00382 ATPases associated with a variety of cellular activities BF39_4635 SM00387 Histidine kinase-like ATPases BF39_4635 SM00388 His Kinase A (phosphoacceptor) domain BF39_4636 SM00448 cheY-homologous receiver domain BF39_4636 SM00862 Transcriptional regulatory protein, C terminal BF39_464 SM00530 Helix-turn-helix XRE-family like proteins BF39_4640 SM01001 AIR carboxylase BF39_4642 SM00998 Adenylosuccinate lyase C-terminus BF39_4645 SM01211 BF39_4645 BF39_4650 SM00798 AICARFT/IMPCHase bienzyme BF39_4650 SM00851 MGS-like domain BF39_4651 SM01209 BF39_4651 BF39_4651 SM01210 BF39_4651 BF39_4653 SM00244 prohibitin homologues BF39_4657 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF39_4657 SM00292 breast cancer carboxy-terminal domain BF39_4657 SM00532 Ligase N family BF39_4663 SM00382 ATPases associated with a variety of cellular activities BF39_4663 SM00930 BF39_4663 BF39_4670 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_4674 SM00845 GatB domain BF39_4675 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF39_468 SM00382 ATPases associated with a variety of cellular activities BF39_4692 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF39_4701 SM01007 Class II Aldolase and Adducin N-terminal domain BF39_471 SM00849 Metallo-beta-lactamase superfamily BF39_471 SM01027 Beta-Casp domain BF39_4722 SM00062 Bacterial periplasmic substrate-binding proteins BF39_4722 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF39_4723 SM00382 ATPases associated with a variety of cellular activities BF39_4724 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_4724 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_4725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4726 SM00642 Alpha-amylase domain BF39_4730 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF39_4730 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF39_4730 SM00493 BF39_4730 BF39_4734 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_4734 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4738 SM00382 ATPases associated with a variety of cellular activities BF39_4739 SM00382 ATPases associated with a variety of cellular activities BF39_4740 SM00060 Fibronectin type 3 domain BF39_4740 SM00636 BF39_4740 BF39_4740 SM00637 BF39_4740 BF39_4746 SM00530 Helix-turn-helix XRE-family like proteins BF39_475 SM00835 Cupin BF39_4751 SM00946 Prolyl-tRNA synthetase, C-terminal BF39_4760 SM00831 Cation transporter/ATPase, N-terminus BF39_4762 SM00226 Low molecular weight phosphatase family BF39_478 SM00855 Phosphoglycerate mutase family BF39_4782 SM00478 endonuclease III BF39_4788 SM00530 Helix-turn-helix XRE-family like proteins BF39_4795 SM00382 ATPases associated with a variety of cellular activities BF39_4844 SM00382 ATPases associated with a variety of cellular activities BF39_4848 SM00530 Helix-turn-helix XRE-family like proteins BF39_4859 SM00984 UDP binding domain BF39_4875 SM00478 endonuclease III BF39_4875 SM00525 BF39_4875 BF39_4880 SM00382 ATPases associated with a variety of cellular activities BF39_4884 SM00382 ATPases associated with a variety of cellular activities BF39_491 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_491 SM00895 BF39_491 BF39_4917 SM00567 E-Z type HEAT repeats BF39_4920 SM00052 Putative diguanylate phosphodiesterase BF39_4920 SM00091 PAS domain BF39_4920 SM00267 diguanylate cyclase BF39_4922 SM00763 PrkA AAA domain BF39_4924 SM00364 Leucine-rich repeats, bacterial type BF39_4924 SM00365 Leucine-rich repeat, SDS22-like subfamily BF39_4924 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF39_4924 SM00725 NEAr Transporter domain BF39_4927 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF39_4929 SM00244 prohibitin homologues BF39_493 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF39_4930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_4930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4931 SM00091 PAS domain BF39_4931 SM00387 Histidine kinase-like ATPases BF39_4932 SM00448 cheY-homologous receiver domain BF39_4936 SM00248 ankyrin repeats BF39_4938 SM00382 ATPases associated with a variety of cellular activities BF39_4943 SM00448 cheY-homologous receiver domain BF39_4943 SM00862 Transcriptional regulatory protein, C terminal BF39_4944 SM00387 Histidine kinase-like ATPases BF39_4944 SM00388 His Kinase A (phosphoacceptor) domain BF39_4947 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_4947 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4948 SM00387 Histidine kinase-like ATPases BF39_4949 SM00448 cheY-homologous receiver domain BF39_4951 SM00919 Malic enzyme, NAD binding domain BF39_4951 SM01274 BF39_4951 BF39_4954 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_4956 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_4956 SM00387 Histidine kinase-like ATPases BF39_4956 SM00388 His Kinase A (phosphoacceptor) domain BF39_4957 SM00448 cheY-homologous receiver domain BF39_4957 SM00862 Transcriptional regulatory protein, C terminal BF39_4961 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF39_4961 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF39_4965 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF39_4965 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF39_4967 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_4970 SM00028 Tetratricopeptide repeats BF39_4970 SM00530 Helix-turn-helix XRE-family like proteins BF39_4983 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_4989 SM00382 ATPases associated with a variety of cellular activities BF39_4994 SM00327 von Willebrand factor (vWF) type A domain BF39_4995 SM00382 ATPases associated with a variety of cellular activities BF39_4996 SM00155 Phospholipase D. Active site motifs. BF39_4999 SM00052 Putative diguanylate phosphodiesterase BF39_4999 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF39_4999 SM00091 PAS domain BF39_4999 SM00267 diguanylate cyclase BF39_5001 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_5001 SM00866 BF39_5001 BF39_5003 SM00642 Alpha-amylase domain BF39_5011 SM00382 ATPases associated with a variety of cellular activities BF39_5012 SM00062 Bacterial periplasmic substrate-binding proteins BF39_5012 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF39_5022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_5022 SM00387 Histidine kinase-like ATPases BF39_5022 SM00388 His Kinase A (phosphoacceptor) domain BF39_5023 SM00448 cheY-homologous receiver domain BF39_5023 SM00862 Transcriptional regulatory protein, C terminal BF39_5031 SM00382 ATPases associated with a variety of cellular activities BF39_5032 SM00382 ATPases associated with a variety of cellular activities BF39_5034 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_5037 SM00354 helix_turn _helix lactose operon repressor BF39_5040 SM00382 ATPases associated with a variety of cellular activities BF39_5047 SM00829 Enoylreductase BF39_5049 SM00770 Zinc dependent phospholipase C (alpha toxin) BF39_5056 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_5058 SM00530 Helix-turn-helix XRE-family like proteins BF39_5068 SM00530 Helix-turn-helix XRE-family like proteins BF39_5086 SM00899 BF39_5086 BF39_511 SM00530 Helix-turn-helix XRE-family like proteins BF39_5118 SM00116 Domain in cystathionine beta-synthase and other proteins. BF39_5121 SM00287 Bacterial SH3 domain homologues BF39_5123 SM00382 ATPases associated with a variety of cellular activities BF39_5140 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_5149 SM00640 Glycosyl hydrolases family 32 BF39_5151 SM00354 helix_turn _helix lactose operon repressor BF39_5165 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_5168 SM00450 Rhodanese Homology Domain BF39_5170 SM00450 Rhodanese Homology Domain BF39_5171 SM00450 Rhodanese Homology Domain BF39_5171 SM00849 Metallo-beta-lactamase superfamily BF39_5175 SM00450 Rhodanese Homology Domain BF39_5180 SM00829 Enoylreductase BF39_5190 SM00287 Bacterial SH3 domain homologues BF39_5192 SM00382 ATPases associated with a variety of cellular activities BF39_520 SM00421 helix_turn_helix, Lux Regulon BF39_520 SM00448 cheY-homologous receiver domain BF39_5203 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF39_522 SM00382 ATPases associated with a variety of cellular activities BF39_5222 SM00344 helix_turn_helix ASNC type BF39_5235 SM01060 BF39_5235 BF39_5241 SM00382 ATPases associated with a variety of cellular activities BF39_5243 SM00382 ATPases associated with a variety of cellular activities BF39_5244 SM00062 Bacterial periplasmic substrate-binding proteins BF39_5244 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF39_5246 SM00382 ATPases associated with a variety of cellular activities BF39_525 SM00155 Phospholipase D. Active site motifs. BF39_5261 SM00644 BF39_5261 BF39_5263 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_5270 SM00957 SecA DEAD-like domain BF39_5270 SM00958 SecA preprotein cross-linking domain BF39_5273 SM00635 Bacterial Ig-like domain 2 BF39_5284 SM00646 BF39_5284 BF39_529 SM00919 Malic enzyme, NAD binding domain BF39_529 SM01274 BF39_529 BF39_5298 SM00382 ATPases associated with a variety of cellular activities BF39_53 SM00448 cheY-homologous receiver domain BF39_53 SM00862 Transcriptional regulatory protein, C terminal BF39_530 SM00387 Histidine kinase-like ATPases BF39_5302 SM00860 SMI1 / KNR4 family BF39_5303 SM00860 SMI1 / KNR4 family BF39_5305 SM00091 PAS domain BF39_5305 SM00387 Histidine kinase-like ATPases BF39_5306 SM00448 cheY-homologous receiver domain BF39_531 SM00448 cheY-homologous receiver domain BF39_5312 SM00422 helix_turn_helix, mercury resistance BF39_533 SM00487 DEAD-like helicases superfamily BF39_533 SM00490 helicase superfamily c-terminal domain BF39_5337 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_5344 SM01120 BF39_5344 BF39_5352 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_5357 SM00460 Transglutaminase/protease-like homologues BF39_5369 SM00331 Sigma factor PP2C-like phosphatases BF39_5369 SM00448 cheY-homologous receiver domain BF39_5370 SM00138 Methyltransferase, chemotaxis proteins BF39_5371 SM00387 Histidine kinase-like ATPases BF39_5371 SM00388 His Kinase A (phosphoacceptor) domain BF39_5371 SM00448 cheY-homologous receiver domain BF39_5378 SM00829 Enoylreductase BF39_5386 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_5391 SM00028 Tetratricopeptide repeats BF39_5396 SM00530 Helix-turn-helix XRE-family like proteins BF39_54 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_54 SM00387 Histidine kinase-like ATPases BF39_54 SM00388 His Kinase A (phosphoacceptor) domain BF39_5406 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_5415 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_5418 SM00382 ATPases associated with a variety of cellular activities BF39_5434 SM00422 helix_turn_helix, mercury resistance BF39_545 SM00646 BF39_545 BF39_5455 SM00354 helix_turn _helix lactose operon repressor BF39_5457 SM00849 Metallo-beta-lactamase superfamily BF39_546 SM00047 Lysozyme subfamily 2 BF39_5462 SM00725 NEAr Transporter domain BF39_5474 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_5477 SM00342 helix_turn_helix, arabinose operon control protein BF39_5477 SM00871 Bacterial transcription activator, effector binding domain BF39_5480 SM00387 Histidine kinase-like ATPases BF39_5480 SM00388 His Kinase A (phosphoacceptor) domain BF39_5481 SM00448 cheY-homologous receiver domain BF39_5481 SM00862 Transcriptional regulatory protein, C terminal BF39_5487 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_5487 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_5495 SM00357 Cold shock protein domain BF39_55 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_55 SM00895 BF39_55 BF39_5518 SM01060 BF39_5518 BF39_5520 SM00642 Alpha-amylase domain BF39_5521 SM00530 Helix-turn-helix XRE-family like proteins BF39_5523 SM00316 Ribosomal protein S1-like RNA-binding domain BF39_5532 SM00382 ATPases associated with a variety of cellular activities BF39_5532 SM01086 C-terminal, D2-small domain, of ClpB protein BF39_5538 SM00825 Beta-ketoacyl synthase BF39_5546 SM00382 ATPases associated with a variety of cellular activities BF39_5547 SM00382 ATPases associated with a variety of cellular activities BF39_5554 SM00155 Phospholipase D. Active site motifs. BF39_5560 SM01118 BF39_5560 BF39_5562 SM00954 Region found in RelA / SpoT proteins BF39_5593 SM00635 Bacterial Ig-like domain 2 BF39_5602 SM00758 BF39_5602 BF39_5603 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_5622 SM00860 SMI1 / KNR4 family BF39_5631 SM00954 Region found in RelA / SpoT proteins BF39_5637 SM00028 Tetratricopeptide repeats BF39_5640 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_5644 SM00318 Staphylococcal nuclease homologues BF39_5646 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF39_5646 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF39_5646 SM00493 BF39_5646 BF39_5660 SM00507 HNH nucleases BF39_5661 SM00487 DEAD-like helicases superfamily BF39_5680 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain BF39_5705 SM00530 Helix-turn-helix XRE-family like proteins BF39_5708 SM00843 BF39_5708 BF39_5711 SM00864 Tubulin/FtsZ family, GTPase domain BF39_5759 SM00725 NEAr Transporter domain BF39_5764 SM00014 Acid phosphatase homologues BF39_5770 SM00984 UDP binding domain BF39_5791 SM01207 BF39_5791 BF39_5798 SM00857 Resolvase, N terminal domain BF39_583 SM00854 Bacterial capsule synthesis protein PGA_cap BF39_5846 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF39_5846 SM00493 BF39_5846 BF39_5847 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF39_5877 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_5881 SM00854 Bacterial capsule synthesis protein PGA_cap BF39_5889 SM00014 Acid phosphatase homologues BF39_589 SM00850 LytTr DNA-binding domain BF39_5901 SM00646 BF39_5901 BF39_601 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_603 SM00448 cheY-homologous receiver domain BF39_603 SM00862 Transcriptional regulatory protein, C terminal BF39_604 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_605 SM00387 Histidine kinase-like ATPases BF39_605 SM00388 His Kinase A (phosphoacceptor) domain BF39_608 SM00450 Rhodanese Homology Domain BF39_619 SM01133 BF39_619 BF39_621 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF39_627 SM01011 Aminopeptidase P, N-terminal domain BF39_630 SM00287 Bacterial SH3 domain homologues BF39_632 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF39_632 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF39_632 SM00493 BF39_632 BF39_652 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF39_659 SM00382 ATPases associated with a variety of cellular activities BF39_660 SM00382 ATPases associated with a variety of cellular activities BF39_667 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_671 SM00382 ATPases associated with a variety of cellular activities BF39_672 SM00382 ATPases associated with a variety of cellular activities BF39_678 SM00287 Bacterial SH3 domain homologues BF39_681 SM00382 ATPases associated with a variety of cellular activities BF39_682 SM00448 cheY-homologous receiver domain BF39_682 SM00862 Transcriptional regulatory protein, C terminal BF39_683 SM00387 Histidine kinase-like ATPases BF39_683 SM00388 His Kinase A (phosphoacceptor) domain BF39_698 SM00448 cheY-homologous receiver domain BF39_698 SM00862 Transcriptional regulatory protein, C terminal BF39_699 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_699 SM00387 Histidine kinase-like ATPases BF39_699 SM00388 His Kinase A (phosphoacceptor) domain BF39_70 SM00822 BF39_70 BF39_719 SM00460 Transglutaminase/protease-like homologues BF39_725 SM00966 SpoVT / AbrB like domain BF39_727 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF39_734 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF39_734 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_746 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF39_766 SM00855 Phosphoglycerate mutase family BF39_776 SM00155 Phospholipase D. Active site motifs. BF39_781 SM01091 Transporter associated domain BF39_796 SM00244 prohibitin homologues BF39_797 SM00855 Phosphoglycerate mutase family BF39_800 SM01005 Alanine racemase, C-terminal domain BF39_806 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_829 SM00487 DEAD-like helicases superfamily BF39_829 SM00490 helicase superfamily c-terminal domain BF39_833 SM00829 Enoylreductase BF39_837 SM00849 Metallo-beta-lactamase superfamily BF39_840 SM00460 Transglutaminase/protease-like homologues BF39_845 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF39_849 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF39_85 SM00420 helix_turn_helix, Deoxyribose operon repressor BF39_85 SM01134 BF39_85 BF39_850 SM00382 ATPases associated with a variety of cellular activities BF39_852 SM00100 Cyclic nucleotide-monophosphate binding domain BF39_852 SM00419 helix_turn_helix, cAMP Regulatory protein BF39_853 SM00729 Elongator protein 3, MiaB family, Radical SAM BF39_855 SM00852 Probable molybdopterin binding domain BF39_868 SM00894 Excalibur calcium-binding domain BF39_879 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF39_880 SM00382 ATPases associated with a variety of cellular activities BF39_887 SM00567 E-Z type HEAT repeats BF39_887 SM00932 Scaffold protein Nfu/NifU N terminal BF39_89 SM00365 Leucine-rich repeat, SDS22-like subfamily BF39_89 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF39_891 SM00836 DALR anticodon binding domain BF39_891 SM01016 Arginyl tRNA synthetase N terminal dom BF39_895 SM00028 Tetratricopeptide repeats BF39_896 SM00028 Tetratricopeptide repeats BF39_902 SM00327 von Willebrand factor (vWF) type A domain BF39_905 SM00382 ATPases associated with a variety of cellular activities BF39_908 SM00028 Tetratricopeptide repeats BF39_915 SM00857 Resolvase, N terminal domain BF39_926 SM00448 cheY-homologous receiver domain BF39_926 SM00862 Transcriptional regulatory protein, C terminal BF39_927 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF39_927 SM00387 Histidine kinase-like ATPases BF39_927 SM00388 His Kinase A (phosphoacceptor) domain BF39_944 SM00382 ATPases associated with a variety of cellular activities BF39_95 SM00387 Histidine kinase-like ATPases BF39_95 SM00388 His Kinase A (phosphoacceptor) domain BF39_956 SM00563 Phosphate acyltransferases BF39_96 SM00347 helix_turn_helix multiple antibiotic resistance protein BF39_978 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF39_979 SM00421 helix_turn_helix, Lux Regulon BF39_979 SM00448 cheY-homologous receiver domain BF39_982 SM00829 Enoylreductase BF39_996 SM00382 ATPases associated with a variety of cellular activities