BAA_0001 SM00382 ATPases associated with a variety of cellular activities BAA_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BAA_0002 SM00480 DNA polymerase III beta subunit BAA_0005 SM00387 Histidine kinase-like ATPases BAA_0005 SM00433 TopoisomeraseII BAA_0006 SM00434 DNA Topoisomerase IV BAA_0014 SM00116 Domain in cystathionine beta-synthase and other proteins. BAA_0014 SM01240 BAA_0014 BAA_0015 SM00936 Penicillin-binding protein 5, C-terminal domain BAA_0026 SM00382 ATPases associated with a variety of cellular activities BAA_0028 SM00493 BAA_0028 BAA_0046 SM00966 SpoVT / AbrB like domain BAA_0049 SM00493 BAA_0049 BAA_0050 SM00650 Ribosomal RNA adenine dimethylases BAA_0060 SM01400 BAA_0060 BAA_0063 SM00487 DEAD-like helicases superfamily BAA_0063 SM00490 helicase superfamily c-terminal domain BAA_0063 SM00982 BAA_0063 BAA_0063 SM01058 CarD-like/TRCF domain BAA_0064 SM00966 SpoVT / AbrB like domain BAA_0067 SM00363 S4 RNA-binding domain BAA_0071 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_0074 SM00331 Sigma factor PP2C-like phosphatases BAA_0074 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAA_0075 SM00977 TilS substrate C-terminal domain BAA_0077 SM00382 ATPases associated with a variety of cellular activities BAA_0085 SM00905 Dihydroneopterin aldolase BAA_0087 SM00530 Helix-turn-helix XRE-family like proteins BAA_0097 SM00382 ATPases associated with a variety of cellular activities BAA_0097 SM01086 C-terminal, D2-small domain, of ClpB protein BAA_0098 SM00382 ATPases associated with a variety of cellular activities BAA_0100 SM00670 Large family of predicted nucleotide-binding domains BAA_0105 SM00840 BAA_0105 BAA_0106 SM00535 Ribonuclease III family BAA_0107 SM00967 RNA 2'-O ribose methyltransferase substrate binding BAA_0109 SM00421 helix_turn_helix, Lux Regulon BAA_0111 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BAA_0112 SM00649 Ribosomal protein L11/L12 BAA_0119 SM00663 RNA polymerase I subunit A N-terminus BAA_0123 SM00838 Elongation factor G C-terminus BAA_0123 SM00889 Elongation factor G, domain IV BAA_0125 SM01403 BAA_0125 BAA_0129 SM01382 BAA_0129 BAA_0129 SM01383 BAA_0129 BAA_0132 SM00322 K homology RNA-binding domain BAA_0136 SM01374 BAA_0136 BAA_0137 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BAA_0149 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_0153 SM00662 RNA polymerases D BAA_0155 SM00382 ATPases associated with a variety of cellular activities BAA_0156 SM00382 ATPases associated with a variety of cellular activities BAA_0163 SM00646 BAA_0163 BAA_0166 SM01251 BAA_0166 BAA_0191 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_0191 SM00895 BAA_0191 BAA_0195 SM01350 BAA_0195 BAA_0206 SM00382 ATPases associated with a variety of cellular activities BAA_0206 SM00930 BAA_0206 BAA_0209 SM00829 Enoylreductase BAA_0220 SM00382 ATPases associated with a variety of cellular activities BAA_0221 SM00382 ATPases associated with a variety of cellular activities BAA_0224 SM00342 helix_turn_helix, arabinose operon control protein BAA_0241 SM00563 Phosphate acyltransferases BAA_0243 SM00354 helix_turn _helix lactose operon repressor BAA_0255 SM00382 ATPases associated with a variety of cellular activities BAA_0261 SM00382 ATPases associated with a variety of cellular activities BAA_0274 SM00487 DEAD-like helicases superfamily BAA_0274 SM00490 helicase superfamily c-terminal domain BAA_0279 SM01005 Alanine racemase, C-terminal domain BAA_0282 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_0282 SM00732 Likely ribonuclease with RNase H fold. BAA_0283 SM00731 SprT homologues. BAA_0305 SM00382 ATPases associated with a variety of cellular activities BAA_0306 SM00881 CoA binding domain BAA_0308 SM00883 Chaperonin 10 Kd subunit BAA_0314 SM00448 cheY-homologous receiver domain BAA_0314 SM00862 Transcriptional regulatory protein, C terminal BAA_0315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0315 SM00387 Histidine kinase-like ATPases BAA_0315 SM00388 His Kinase A (phosphoacceptor) domain BAA_0335 SM00382 ATPases associated with a variety of cellular activities BAA_0336 SM00387 Histidine kinase-like ATPases BAA_0336 SM00388 His Kinase A (phosphoacceptor) domain BAA_0337 SM00448 cheY-homologous receiver domain BAA_0337 SM00862 Transcriptional regulatory protein, C terminal BAA_0343 SM01001 AIR carboxylase BAA_0345 SM00998 Adenylosuccinate lyase C-terminus BAA_0348 SM01211 BAA_0348 BAA_0353 SM00798 AICARFT/IMPCHase bienzyme BAA_0353 SM00851 MGS-like domain BAA_0354 SM01209 BAA_0354 BAA_0354 SM01210 BAA_0354 BAA_0356 SM00244 prohibitin homologues BAA_0360 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAA_0360 SM00292 breast cancer carboxy-terminal domain BAA_0360 SM00532 Ligase N family BAA_0367 SM00382 ATPases associated with a variety of cellular activities BAA_0367 SM00930 BAA_0367 BAA_0374 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_0378 SM00845 GatB domain BAA_0379 SM00046 Diacylglycerol kinase catalytic domain (presumed) BAA_0382 SM00382 ATPases associated with a variety of cellular activities BAA_0396 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAA_0405 SM01007 Class II Aldolase and Adducin N-terminal domain BAA_0428 SM00062 Bacterial periplasmic substrate-binding proteins BAA_0428 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAA_0429 SM00382 ATPases associated with a variety of cellular activities BAA_0430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_0430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0431 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_0431 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0432 SM00642 Alpha-amylase domain BAA_0437 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAA_0437 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAA_0437 SM00493 BAA_0437 BAA_0442 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_0442 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0447 SM00382 ATPases associated with a variety of cellular activities BAA_0448 SM00382 ATPases associated with a variety of cellular activities BAA_0449 SM00060 Fibronectin type 3 domain BAA_0449 SM00636 BAA_0449 BAA_0449 SM00637 BAA_0449 BAA_0455 SM00530 Helix-turn-helix XRE-family like proteins BAA_0469 SM00831 Cation transporter/ATPase, N-terminus BAA_0471 SM00226 Low molecular weight phosphatase family BAA_0498 SM00530 Helix-turn-helix XRE-family like proteins BAA_0499 SM00530 Helix-turn-helix XRE-family like proteins BAA_0505 SM00382 ATPases associated with a variety of cellular activities BAA_0551 SM00382 ATPases associated with a variety of cellular activities BAA_0555 SM00530 Helix-turn-helix XRE-family like proteins BAA_0567 SM00984 UDP binding domain BAA_0583 SM00478 endonuclease III BAA_0583 SM00525 BAA_0583 BAA_0590 SM00382 ATPases associated with a variety of cellular activities BAA_0594 SM00382 ATPases associated with a variety of cellular activities BAA_0627 SM00567 E-Z type HEAT repeats BAA_0630 SM00052 Putative diguanylate phosphodiesterase BAA_0630 SM00091 PAS domain BAA_0630 SM00267 diguanylate cyclase BAA_0632 SM00763 PrkA AAA domain BAA_0634 SM00364 Leucine-rich repeats, bacterial type BAA_0634 SM00365 Leucine-rich repeat, SDS22-like subfamily BAA_0634 SM00369 Leucine-rich repeats, typical (most populated) subfamily BAA_0634 SM00725 NEAr Transporter domain BAA_0637 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BAA_0639 SM00244 prohibitin homologues BAA_0640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_0640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0641 SM00091 PAS domain BAA_0641 SM00387 Histidine kinase-like ATPases BAA_0647 SM00248 ankyrin repeats BAA_0649 SM00382 ATPases associated with a variety of cellular activities BAA_0654 SM00448 cheY-homologous receiver domain BAA_0654 SM00862 Transcriptional regulatory protein, C terminal BAA_0655 SM00387 Histidine kinase-like ATPases BAA_0655 SM00388 His Kinase A (phosphoacceptor) domain BAA_0658 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_0658 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0659 SM00387 Histidine kinase-like ATPases BAA_0660 SM00448 cheY-homologous receiver domain BAA_0662 SM00919 Malic enzyme, NAD binding domain BAA_0662 SM01274 BAA_0662 BAA_0665 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_0667 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0667 SM00387 Histidine kinase-like ATPases BAA_0667 SM00388 His Kinase A (phosphoacceptor) domain BAA_0668 SM00448 cheY-homologous receiver domain BAA_0668 SM00862 Transcriptional regulatory protein, C terminal BAA_0672 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAA_0672 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BAA_0676 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BAA_0676 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BAA_0678 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_0681 SM00028 Tetratricopeptide repeats BAA_0681 SM00530 Helix-turn-helix XRE-family like proteins BAA_0694 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_0700 SM00382 ATPases associated with a variety of cellular activities BAA_0705 SM00327 von Willebrand factor (vWF) type A domain BAA_0706 SM00382 ATPases associated with a variety of cellular activities BAA_0707 SM00155 Phospholipase D. Active site motifs. BAA_0710 SM00052 Putative diguanylate phosphodiesterase BAA_0710 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BAA_0710 SM00091 PAS domain BAA_0710 SM00267 diguanylate cyclase BAA_0712 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_0712 SM00866 BAA_0712 BAA_0714 SM00642 Alpha-amylase domain BAA_0721 SM00382 ATPases associated with a variety of cellular activities BAA_0722 SM00062 Bacterial periplasmic substrate-binding proteins BAA_0722 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAA_0732 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_0732 SM00387 Histidine kinase-like ATPases BAA_0732 SM00388 His Kinase A (phosphoacceptor) domain BAA_0733 SM00448 cheY-homologous receiver domain BAA_0733 SM00862 Transcriptional regulatory protein, C terminal BAA_0742 SM00382 ATPases associated with a variety of cellular activities BAA_0743 SM00382 ATPases associated with a variety of cellular activities BAA_0745 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_0748 SM00354 helix_turn _helix lactose operon repressor BAA_0751 SM00382 ATPases associated with a variety of cellular activities BAA_0758 SM00829 Enoylreductase BAA_0760 SM00770 Zinc dependent phospholipase C (alpha toxin) BAA_0767 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_0769 SM00530 Helix-turn-helix XRE-family like proteins BAA_0778 SM00530 Helix-turn-helix XRE-family like proteins BAA_0797 SM00899 BAA_0797 BAA_0825 SM00116 Domain in cystathionine beta-synthase and other proteins. BAA_0829 SM00287 Bacterial SH3 domain homologues BAA_0833 SM00382 ATPases associated with a variety of cellular activities BAA_0852 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_0861 SM00640 Glycosyl hydrolases family 32 BAA_0863 SM00354 helix_turn _helix lactose operon repressor BAA_0879 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_0882 SM00450 Rhodanese Homology Domain BAA_0884 SM00450 Rhodanese Homology Domain BAA_0885 SM00450 Rhodanese Homology Domain BAA_0885 SM00849 Metallo-beta-lactamase superfamily BAA_0888 SM00450 Rhodanese Homology Domain BAA_0893 SM00829 Enoylreductase BAA_0904 SM00287 Bacterial SH3 domain homologues BAA_0906 SM00382 ATPases associated with a variety of cellular activities BAA_0918 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BAA_0938 SM00344 helix_turn_helix ASNC type BAA_0951 SM01060 BAA_0951 BAA_0958 SM00382 ATPases associated with a variety of cellular activities BAA_0961 SM00062 Bacterial periplasmic substrate-binding proteins BAA_0961 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAA_0963 SM00382 ATPases associated with a variety of cellular activities BAA_0980 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_0987 SM00957 SecA DEAD-like domain BAA_0987 SM00958 SecA preprotein cross-linking domain BAA_0990 SM00635 Bacterial Ig-like domain 2 BAA_1001 SM00646 BAA_1001 BAA_1016 SM00382 ATPases associated with a variety of cellular activities BAA_1021 SM00860 SMI1 / KNR4 family BAA_1023 SM00091 PAS domain BAA_1023 SM00387 Histidine kinase-like ATPases BAA_1024 SM00448 cheY-homologous receiver domain BAA_1032 SM00422 helix_turn_helix, mercury resistance BAA_1056 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_1063 SM01120 BAA_1063 BAA_1072 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_1076 SM00460 Transglutaminase/protease-like homologues BAA_1088 SM00331 Sigma factor PP2C-like phosphatases BAA_1088 SM00448 cheY-homologous receiver domain BAA_1089 SM00138 Methyltransferase, chemotaxis proteins BAA_1090 SM00387 Histidine kinase-like ATPases BAA_1090 SM00388 His Kinase A (phosphoacceptor) domain BAA_1090 SM00448 cheY-homologous receiver domain BAA_1098 SM00829 Enoylreductase BAA_1107 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_1112 SM00028 Tetratricopeptide repeats BAA_1117 SM00530 Helix-turn-helix XRE-family like proteins BAA_1127 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_1136 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_1139 SM00382 ATPases associated with a variety of cellular activities BAA_1153 SM00422 helix_turn_helix, mercury resistance BAA_1176 SM00849 Metallo-beta-lactamase superfamily BAA_1181 SM00725 NEAr Transporter domain BAA_1196 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_1199 SM00342 helix_turn_helix, arabinose operon control protein BAA_1199 SM00871 Bacterial transcription activator, effector binding domain BAA_1202 SM00387 Histidine kinase-like ATPases BAA_1202 SM00388 His Kinase A (phosphoacceptor) domain BAA_1203 SM00448 cheY-homologous receiver domain BAA_1203 SM00862 Transcriptional regulatory protein, C terminal BAA_1209 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_1209 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_1218 SM00357 Cold shock protein domain BAA_1241 SM01060 BAA_1241 BAA_1244 SM00642 Alpha-amylase domain BAA_1245 SM00530 Helix-turn-helix XRE-family like proteins BAA_1247 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_1256 SM00382 ATPases associated with a variety of cellular activities BAA_1256 SM01086 C-terminal, D2-small domain, of ClpB protein BAA_1262 SM00825 Beta-ketoacyl synthase BAA_1270 SM00382 ATPases associated with a variety of cellular activities BAA_1271 SM00382 ATPases associated with a variety of cellular activities BAA_1279 SM00155 Phospholipase D. Active site motifs. BAA_1285 SM01118 BAA_1285 BAA_1287 SM00954 Region found in RelA / SpoT proteins BAA_1321 SM00635 Bacterial Ig-like domain 2 BAA_1344 SM00861 Transketolase, pyrimidine binding domain BAA_1345 SM00530 Helix-turn-helix XRE-family like proteins BAA_1362 SM00530 Helix-turn-helix XRE-family like proteins BAA_1365 SM00382 ATPases associated with a variety of cellular activities BAA_1369 SM00014 Acid phosphatase homologues BAA_1379 SM00448 cheY-homologous receiver domain BAA_1379 SM00862 Transcriptional regulatory protein, C terminal BAA_1380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_1380 SM00387 Histidine kinase-like ATPases BAA_1380 SM00388 His Kinase A (phosphoacceptor) domain BAA_1381 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_1381 SM00895 BAA_1381 BAA_1397 SM00822 BAA_1397 BAA_1410 SM00420 helix_turn_helix, Deoxyribose operon repressor BAA_1410 SM01134 BAA_1410 BAA_1420 SM00387 Histidine kinase-like ATPases BAA_1420 SM00388 His Kinase A (phosphoacceptor) domain BAA_1421 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_1425 SM00387 Histidine kinase-like ATPases BAA_1425 SM00388 His Kinase A (phosphoacceptor) domain BAA_1439 SM00465 GIY-YIG type nucleases (URI domain) BAA_1439 SM00496 Intron-encoded nuclease repeat 2 BAA_1442 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_1443 SM00382 ATPases associated with a variety of cellular activities BAA_1445 SM00382 ATPases associated with a variety of cellular activities BAA_1449 SM00344 helix_turn_helix ASNC type BAA_1487 SM00917 LeuA allosteric (dimerisation) domain BAA_1488 SM01329 BAA_1488 BAA_1527 SM00387 Histidine kinase-like ATPases BAA_1528 SM00421 helix_turn_helix, Lux Regulon BAA_1528 SM00448 cheY-homologous receiver domain BAA_1550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_1550 SM00387 Histidine kinase-like ATPases BAA_1550 SM00388 His Kinase A (phosphoacceptor) domain BAA_1561 SM00363 S4 RNA-binding domain BAA_1565 SM00448 cheY-homologous receiver domain BAA_1565 SM00862 Transcriptional regulatory protein, C terminal BAA_1566 SM00091 PAS domain BAA_1566 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_1566 SM00387 Histidine kinase-like ATPases BAA_1566 SM00388 His Kinase A (phosphoacceptor) domain BAA_1568 SM00257 Lysin motif BAA_1574 SM00487 DEAD-like helicases superfamily BAA_1574 SM00490 helicase superfamily c-terminal domain BAA_1576 SM00257 Lysin motif BAA_1579 SM00422 helix_turn_helix, mercury resistance BAA_1581 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BAA_1586 SM00870 BAA_1586 BAA_1588 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_1589 SM01240 BAA_1589 BAA_1600 SM00411 bacterial (prokaryotic) histone like domain BAA_1605 SM00562 BAA_1605 BAA_1609 SM00028 Tetratricopeptide repeats BAA_1610 SM00914 BAA_1610 BAA_1619 SM00986 Uracil DNA glycosylase superfamily BAA_1619 SM00987 UreE urease accessory protein, C-terminal domain BAA_1623 SM00851 MGS-like domain BAA_1632 SM00479 BAA_1632 BAA_1632 SM00487 DEAD-like helicases superfamily BAA_1632 SM00491 BAA_1632 BAA_1637 SM00478 endonuclease III BAA_1637 SM00525 BAA_1637 BAA_1639 SM00060 Fibronectin type 3 domain BAA_1651 SM00981 BAA_1651 BAA_1653 SM00491 BAA_1653 BAA_1668 SM00450 Rhodanese Homology Domain BAA_1677 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BAA_1677 SM00475 5'-3' exonuclease BAA_1702 SM00357 Cold shock protein domain BAA_1713 SM00422 helix_turn_helix, mercury resistance BAA_1713 SM00871 Bacterial transcription activator, effector binding domain BAA_1732 SM00448 cheY-homologous receiver domain BAA_1738 SM00138 Methyltransferase, chemotaxis proteins BAA_1755 SM00382 ATPases associated with a variety of cellular activities BAA_1773 SM00028 Tetratricopeptide repeats BAA_1795 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAA_1805 SM00530 Helix-turn-helix XRE-family like proteins BAA_1812 SM00849 Metallo-beta-lactamase superfamily BAA_1812 SM01027 Beta-Casp domain BAA_1816 SM00835 Cupin BAA_1819 SM00855 Phosphoglycerate mutase family BAA_1832 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_1832 SM00895 BAA_1832 BAA_1834 SM00833 Cobalamin synthesis protein cobW C-terminal domain BAA_1853 SM00530 Helix-turn-helix XRE-family like proteins BAA_1862 SM00421 helix_turn_helix, Lux Regulon BAA_1862 SM00448 cheY-homologous receiver domain BAA_1864 SM00382 ATPases associated with a variety of cellular activities BAA_1867 SM00155 Phospholipase D. Active site motifs. BAA_1871 SM00919 Malic enzyme, NAD binding domain BAA_1871 SM01274 BAA_1871 BAA_1872 SM00387 Histidine kinase-like ATPases BAA_1873 SM00448 cheY-homologous receiver domain BAA_1874 SM00487 DEAD-like helicases superfamily BAA_1874 SM00490 helicase superfamily c-terminal domain BAA_1887 SM00646 BAA_1887 BAA_1888 SM00047 Lysozyme subfamily 2 BAA_1924 SM00854 Bacterial capsule synthesis protein PGA_cap BAA_1930 SM00850 LytTr DNA-binding domain BAA_1941 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_1943 SM00448 cheY-homologous receiver domain BAA_1943 SM00862 Transcriptional regulatory protein, C terminal BAA_1948 SM00450 Rhodanese Homology Domain BAA_1960 SM01133 BAA_1960 BAA_1962 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BAA_1969 SM01011 Aminopeptidase P, N-terminal domain BAA_1971 SM00287 Bacterial SH3 domain homologues BAA_1973 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAA_1973 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAA_1973 SM00493 BAA_1973 BAA_1995 SM00833 Cobalamin synthesis protein cobW C-terminal domain BAA_2002 SM00382 ATPases associated with a variety of cellular activities BAA_2003 SM00382 ATPases associated with a variety of cellular activities BAA_2010 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_2014 SM00382 ATPases associated with a variety of cellular activities BAA_2015 SM00382 ATPases associated with a variety of cellular activities BAA_2021 SM00287 Bacterial SH3 domain homologues BAA_2025 SM00448 cheY-homologous receiver domain BAA_2025 SM00862 Transcriptional regulatory protein, C terminal BAA_2026 SM00387 Histidine kinase-like ATPases BAA_2026 SM00388 His Kinase A (phosphoacceptor) domain BAA_2043 SM00448 cheY-homologous receiver domain BAA_2043 SM00862 Transcriptional regulatory protein, C terminal BAA_2044 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_2044 SM00387 Histidine kinase-like ATPases BAA_2044 SM00388 His Kinase A (phosphoacceptor) domain BAA_2064 SM00460 Transglutaminase/protease-like homologues BAA_2071 SM00966 SpoVT / AbrB like domain BAA_2073 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_2080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_2080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_2092 SM00833 Cobalamin synthesis protein cobW C-terminal domain BAA_2111 SM00855 Phosphoglycerate mutase family BAA_2127 SM01091 Transporter associated domain BAA_2141 SM00244 prohibitin homologues BAA_2142 SM00855 Phosphoglycerate mutase family BAA_2145 SM01005 Alanine racemase, C-terminal domain BAA_2151 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_2175 SM00487 DEAD-like helicases superfamily BAA_2175 SM00490 helicase superfamily c-terminal domain BAA_2179 SM00829 Enoylreductase BAA_2183 SM00849 Metallo-beta-lactamase superfamily BAA_2186 SM00460 Transglutaminase/protease-like homologues BAA_2191 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAA_2195 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_2196 SM00382 ATPases associated with a variety of cellular activities BAA_2198 SM00100 Cyclic nucleotide-monophosphate binding domain BAA_2198 SM00419 helix_turn_helix, cAMP Regulatory protein BAA_2199 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_2201 SM00852 Probable molybdopterin binding domain BAA_2214 SM00894 Excalibur calcium-binding domain BAA_2225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_2226 SM00382 ATPases associated with a variety of cellular activities BAA_2233 SM00567 E-Z type HEAT repeats BAA_2233 SM00932 Scaffold protein Nfu/NifU N terminal BAA_2237 SM00836 DALR anticodon binding domain BAA_2237 SM01016 Arginyl tRNA synthetase N terminal dom BAA_2248 SM00327 von Willebrand factor (vWF) type A domain BAA_2251 SM00382 ATPases associated with a variety of cellular activities BAA_2263 SM00857 Resolvase, N terminal domain BAA_2274 SM00448 cheY-homologous receiver domain BAA_2274 SM00862 Transcriptional regulatory protein, C terminal BAA_2275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_2275 SM00387 Histidine kinase-like ATPases BAA_2275 SM00388 His Kinase A (phosphoacceptor) domain BAA_2291 SM00382 ATPases associated with a variety of cellular activities BAA_2304 SM00563 Phosphate acyltransferases BAA_2326 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BAA_2327 SM00421 helix_turn_helix, Lux Regulon BAA_2327 SM00448 cheY-homologous receiver domain BAA_2330 SM00829 Enoylreductase BAA_2344 SM00382 ATPases associated with a variety of cellular activities BAA_2352 SM01091 Transporter associated domain BAA_2355 SM00387 Histidine kinase-like ATPases BAA_2355 SM00388 His Kinase A (phosphoacceptor) domain BAA_2359 SM00882 Coenzyme A transferase BAA_2360 SM00882 Coenzyme A transferase BAA_2363 SM00382 ATPases associated with a variety of cellular activities BAA_2371 SM00219 Tyrosine kinase, catalytic domain BAA_2374 SM00014 Acid phosphatase homologues BAA_2377 SM00860 SMI1 / KNR4 family BAA_2382 SM00530 Helix-turn-helix XRE-family like proteins BAA_2393 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BAA_2422 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_2430 SM00823 Phosphopantetheine attachment site BAA_2430 SM00824 Thioesterase BAA_2431 SM00923 MbtH-like protein BAA_2435 SM00411 bacterial (prokaryotic) histone like domain BAA_2444 SM00363 S4 RNA-binding domain BAA_2446 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAA_2459 SM00849 Metallo-beta-lactamase superfamily BAA_2464 SM00849 Metallo-beta-lactamase superfamily BAA_2468 SM01059 Chloramphenicol acetyltransferase BAA_2473 SM00530 Helix-turn-helix XRE-family like proteins BAA_2481 SM00357 Cold shock protein domain BAA_2494 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAA_2501 SM00382 ATPases associated with a variety of cellular activities BAA_2502 SM00382 ATPases associated with a variety of cellular activities BAA_2503 SM00646 BAA_2503 BAA_2505 SM00530 Helix-turn-helix XRE-family like proteins BAA_2524 SM01207 BAA_2524 BAA_2528 SM00849 Metallo-beta-lactamase superfamily BAA_2531 SM00487 DEAD-like helicases superfamily BAA_2531 SM00490 helicase superfamily c-terminal domain BAA_2538 SM00382 ATPases associated with a variety of cellular activities BAA_2543 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_2544 SM00855 Phosphoglycerate mutase family BAA_2564 SM00014 Acid phosphatase homologues BAA_2565 SM00354 helix_turn _helix lactose operon repressor BAA_2583 SM00530 Helix-turn-helix XRE-family like proteins BAA_2587 SM00646 BAA_2587 BAA_2591 SM00382 ATPases associated with a variety of cellular activities BAA_2593 SM00052 Putative diguanylate phosphodiesterase BAA_2593 SM00091 PAS domain BAA_2593 SM00267 diguanylate cyclase BAA_2596 SM00860 SMI1 / KNR4 family BAA_2598 SM00450 Rhodanese Homology Domain BAA_2598 SM00849 Metallo-beta-lactamase superfamily BAA_2601 SM00382 ATPases associated with a variety of cellular activities BAA_2607 SM00878 Biotin carboxylase C-terminal domain BAA_2619 SM00387 Histidine kinase-like ATPases BAA_2619 SM00388 His Kinase A (phosphoacceptor) domain BAA_2620 SM00448 cheY-homologous receiver domain BAA_2620 SM00862 Transcriptional regulatory protein, C terminal BAA_2632 SM00382 ATPases associated with a variety of cellular activities BAA_2636 SM00422 helix_turn_helix, mercury resistance BAA_2636 SM00871 Bacterial transcription activator, effector binding domain BAA_2642 SM00342 helix_turn_helix, arabinose operon control protein BAA_2645 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_2657 SM00448 cheY-homologous receiver domain BAA_2657 SM00862 Transcriptional regulatory protein, C terminal BAA_2665 SM00382 ATPases associated with a variety of cellular activities BAA_2672 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_2673 SM01209 BAA_2673 BAA_2708 SM00382 ATPases associated with a variety of cellular activities BAA_2711 SM00387 Histidine kinase-like ATPases BAA_2711 SM00388 His Kinase A (phosphoacceptor) domain BAA_2714 SM00829 Enoylreductase BAA_2715 SM00740 BAA_2715 BAA_2727 SM00422 helix_turn_helix, mercury resistance BAA_2748 SM00480 DNA polymerase III beta subunit BAA_2770 SM00465 GIY-YIG type nucleases (URI domain) BAA_2793 SM00642 Alpha-amylase domain BAA_2797 SM00871 Bacterial transcription activator, effector binding domain BAA_2801 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_2824 SM00382 ATPases associated with a variety of cellular activities BAA_2828 SM00420 helix_turn_helix, Deoxyribose operon repressor BAA_2828 SM01134 BAA_2828 BAA_2838 SM00861 Transketolase, pyrimidine binding domain BAA_2849 SM00116 Domain in cystathionine beta-synthase and other proteins. BAA_2849 SM00382 ATPases associated with a variety of cellular activities BAA_2856 SM00060 Fibronectin type 3 domain BAA_2856 SM00495 Chitin-binding domain type 3 BAA_2866 SM00849 Metallo-beta-lactamase superfamily BAA_2881 SM00341 Helicase and RNase D C-terminal BAA_2881 SM00487 DEAD-like helicases superfamily BAA_2881 SM00490 helicase superfamily c-terminal domain BAA_2881 SM00956 BAA_2881 BAA_2888 SM01131 BAA_2888 BAA_2894 SM01130 BAA_2894 BAA_2898 SM00091 PAS domain BAA_2898 SM00382 ATPases associated with a variety of cellular activities BAA_2912 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAA_2920 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BAA_2921 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_2921 SM00387 Histidine kinase-like ATPases BAA_2921 SM00388 His Kinase A (phosphoacceptor) domain BAA_2975 SM00062 Bacterial periplasmic substrate-binding proteins BAA_2976 SM00382 ATPases associated with a variety of cellular activities BAA_2982 SM00028 Tetratricopeptide repeats BAA_3001 SM00382 ATPases associated with a variety of cellular activities BAA_3012 SM00830 Chorismate mutase type II BAA_3020 SM00287 Bacterial SH3 domain homologues BAA_3036 SM01133 BAA_3036 BAA_3043 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3047 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BAA_3050 SM00346 helix_turn_helix isocitrate lyase regulation BAA_3054 SM00098 Alkaline phosphatase homologues BAA_3056 SM00530 Helix-turn-helix XRE-family like proteins BAA_3061 SM00850 LytTr DNA-binding domain BAA_3080 SM01060 BAA_3080 BAA_3091 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_3092 SM00889 Elongation factor G, domain IV BAA_3099 SM00382 ATPases associated with a variety of cellular activities BAA_3100 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_3102 SM00382 ATPases associated with a variety of cellular activities BAA_3107 SM00342 helix_turn_helix, arabinose operon control protein BAA_3107 SM00871 Bacterial transcription activator, effector binding domain BAA_3112 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_3116 SM00387 Histidine kinase-like ATPases BAA_3116 SM00388 His Kinase A (phosphoacceptor) domain BAA_3117 SM00448 cheY-homologous receiver domain BAA_3117 SM00862 Transcriptional regulatory protein, C terminal BAA_3148 SM00796 Allophanate hydrolase subunit 1 BAA_3149 SM00346 helix_turn_helix isocitrate lyase regulation BAA_3153 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3167 SM00849 Metallo-beta-lactamase superfamily BAA_3184 SM00870 BAA_3184 BAA_3185 SM00530 Helix-turn-helix XRE-family like proteins BAA_3192 SM00919 Malic enzyme, NAD binding domain BAA_3192 SM01274 BAA_3192 BAA_3202 SM00448 cheY-homologous receiver domain BAA_3214 SM01060 BAA_3214 BAA_3240 SM00382 ATPases associated with a variety of cellular activities BAA_3245 SM00226 Low molecular weight phosphatase family BAA_3248 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3250 SM00028 Tetratricopeptide repeats BAA_3254 SM00344 helix_turn_helix ASNC type BAA_3268 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_3276 SM00448 cheY-homologous receiver domain BAA_3276 SM00862 Transcriptional regulatory protein, C terminal BAA_3277 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_3277 SM00387 Histidine kinase-like ATPases BAA_3277 SM00388 His Kinase A (phosphoacceptor) domain BAA_3288 SM00530 Helix-turn-helix XRE-family like proteins BAA_3298 SM00382 ATPases associated with a variety of cellular activities BAA_3300 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3302 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_3302 SM00387 Histidine kinase-like ATPases BAA_3302 SM00388 His Kinase A (phosphoacceptor) domain BAA_3303 SM00448 cheY-homologous receiver domain BAA_3303 SM00862 Transcriptional regulatory protein, C terminal BAA_3305 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_3324 SM00354 helix_turn _helix lactose operon repressor BAA_3325 SM00028 Tetratricopeptide repeats BAA_3332 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_3332 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_3332 SM00319 Homologues of the ligand binding domain of Tar BAA_3338 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BAA_3342 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3351 SM00344 helix_turn_helix ASNC type BAA_3363 SM00342 helix_turn_helix, arabinose operon control protein BAA_3377 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_3382 SM00382 ATPases associated with a variety of cellular activities BAA_3385 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3399 SM00382 ATPases associated with a variety of cellular activities BAA_3408 SM00530 Helix-turn-helix XRE-family like proteins BAA_3409 SM01207 BAA_3409 BAA_3421 SM00382 ATPases associated with a variety of cellular activities BAA_3424 SM00530 Helix-turn-helix XRE-family like proteins BAA_3436 SM01266 BAA_3436 BAA_3439 SM00382 ATPases associated with a variety of cellular activities BAA_3451 SM00028 Tetratricopeptide repeats BAA_3456 SM01091 Transporter associated domain BAA_3457 SM00422 helix_turn_helix, mercury resistance BAA_3465 SM01350 BAA_3465 BAA_3466 SM00861 Transketolase, pyrimidine binding domain BAA_3469 SM00829 Enoylreductase BAA_3472 SM00829 Enoylreductase BAA_3475 SM01276 BAA_3475 BAA_3484 SM00914 BAA_3484 BAA_3490 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_3490 SM00866 BAA_3490 BAA_3498 SM00849 Metallo-beta-lactamase superfamily BAA_3512 SM00248 ankyrin repeats BAA_3513 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3523 SM00871 Bacterial transcription activator, effector binding domain BAA_3527 SM00382 ATPases associated with a variety of cellular activities BAA_3532 SM00849 Metallo-beta-lactamase superfamily BAA_3533 SM00641 Glycosyl hydrolases family 25 BAA_3546 SM00849 Metallo-beta-lactamase superfamily BAA_3575 SM00829 Enoylreductase BAA_3576 SM00855 Phosphoglycerate mutase family BAA_3578 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAA_3578 SM00534 ATPase domain of DNA mismatch repair MUTS family BAA_3581 SM00642 Alpha-amylase domain BAA_3594 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_3595 SM00829 Enoylreductase BAA_3612 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BAA_3622 SM00479 BAA_3622 BAA_3623 SM00357 Cold shock protein domain BAA_3628 SM01022 BAA_3628 BAA_3650 SM00852 Probable molybdopterin binding domain BAA_3653 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_3657 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAA_3657 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BAA_3682 SM00382 ATPases associated with a variety of cellular activities BAA_3685 SM00434 DNA Topoisomerase IV BAA_3686 SM00387 Histidine kinase-like ATPases BAA_3686 SM00433 TopoisomeraseII BAA_3687 SM00881 CoA binding domain BAA_3688 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAA_3689 SM00448 cheY-homologous receiver domain BAA_3689 SM00862 Transcriptional regulatory protein, C terminal BAA_3693 SM01207 BAA_3693 BAA_3696 SM00257 Lysin motif BAA_3696 SM00636 BAA_3696 BAA_3700 SM00479 BAA_3700 BAA_3704 SM00382 ATPases associated with a variety of cellular activities BAA_3712 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAA_3725 SM00644 BAA_3725 BAA_3725 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BAA_3726 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAA_3729 SM00091 PAS domain BAA_3729 SM00387 Histidine kinase-like ATPases BAA_3729 SM00388 His Kinase A (phosphoacceptor) domain BAA_3735 SM01058 CarD-like/TRCF domain BAA_3762 SM00644 BAA_3762 BAA_3765 SM00382 ATPases associated with a variety of cellular activities BAA_3766 SM00382 ATPases associated with a variety of cellular activities BAA_3769 SM00861 Transketolase, pyrimidine binding domain BAA_3773 SM00382 ATPases associated with a variety of cellular activities BAA_3774 SM00062 Bacterial periplasmic substrate-binding proteins BAA_3778 SM00857 Resolvase, N terminal domain BAA_3785 SM00028 Tetratricopeptide repeats BAA_3792 SM00287 Bacterial SH3 domain homologues BAA_3792 SM00644 BAA_3792 BAA_3823 SM00530 Helix-turn-helix XRE-family like proteins BAA_3840 SM00382 ATPases associated with a variety of cellular activities BAA_3850 SM00530 Helix-turn-helix XRE-family like proteins BAA_3851 SM00530 Helix-turn-helix XRE-family like proteins BAA_3856 SM01230 BAA_3856 BAA_3857 SM00422 helix_turn_helix, mercury resistance BAA_3862 SM00382 ATPases associated with a variety of cellular activities BAA_3868 SM00287 Bacterial SH3 domain homologues BAA_3871 SM00420 helix_turn_helix, Deoxyribose operon repressor BAA_3871 SM01134 BAA_3871 BAA_3878 SM00636 BAA_3878 BAA_3882 SM00411 bacterial (prokaryotic) histone like domain BAA_3888 SM00382 ATPases associated with a variety of cellular activities BAA_3894 SM00342 helix_turn_helix, arabinose operon control protein BAA_3896 SM00478 endonuclease III BAA_3905 SM00052 Putative diguanylate phosphodiesterase BAA_3905 SM00091 PAS domain BAA_3905 SM00267 diguanylate cyclase BAA_3911 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_3915 SM00148 Phospholipase C, catalytic domain (part); domain X BAA_3918 SM00257 Lysin motif BAA_3924 SM00387 Histidine kinase-like ATPases BAA_3924 SM00388 His Kinase A (phosphoacceptor) domain BAA_3925 SM00448 cheY-homologous receiver domain BAA_3925 SM00862 Transcriptional regulatory protein, C terminal BAA_3928 SM00382 ATPases associated with a variety of cellular activities BAA_3929 SM00853 MutL C terminal dimerisation domain BAA_3929 SM01340 BAA_3929 BAA_3930 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAA_3930 SM00534 ATPase domain of DNA mismatch repair MUTS family BAA_3933 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_3939 SM00322 K homology RNA-binding domain BAA_3939 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_3941 SM00382 ATPases associated with a variety of cellular activities BAA_3942 SM00852 Probable molybdopterin binding domain BAA_3953 SM00382 ATPases associated with a variety of cellular activities BAA_3955 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_3955 SM00866 BAA_3955 BAA_3957 SM00382 ATPases associated with a variety of cellular activities BAA_3957 SM00843 BAA_3957 BAA_3960 SM00849 Metallo-beta-lactamase superfamily BAA_3961 SM01130 BAA_3961 BAA_3963 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAA_3969 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_3969 SM00322 K homology RNA-binding domain BAA_3970 SM00904 Riboflavin kinase BAA_3977 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_3977 SM00322 K homology RNA-binding domain BAA_3979 SM00479 BAA_3979 BAA_3979 SM00481 DNA polymerase alpha chain like domain BAA_3981 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAA_3990 SM00382 ATPases associated with a variety of cellular activities BAA_3990 SM01086 C-terminal, D2-small domain, of ClpB protein BAA_3994 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAA_3994 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAA_3994 SM00493 BAA_3994 BAA_3996 SM00881 CoA binding domain BAA_4007 SM00382 ATPases associated with a variety of cellular activities BAA_4007 SM00962 SRP54-type protein, GTPase domain BAA_4007 SM00963 SRP54-type protein, helical bundle domain BAA_4009 SM00382 ATPases associated with a variety of cellular activities BAA_4009 SM00962 SRP54-type protein, GTPase domain BAA_4009 SM00963 SRP54-type protein, helical bundle domain BAA_4010 SM00968 SMC proteins Flexible Hinge Domain BAA_4011 SM00358 Double-stranded RNA binding motif BAA_4011 SM00535 Ribonuclease III family BAA_4013 SM00822 BAA_4013 BAA_4014 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BAA_4017 SM00487 DEAD-like helicases superfamily BAA_4017 SM00490 helicase superfamily c-terminal domain BAA_4018 SM01120 BAA_4018 BAA_4018 SM01121 BAA_4018 BAA_4021 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BAA_4024 SM00220 Serine/Threonine protein kinases, catalytic domain BAA_4024 SM00740 BAA_4024 BAA_4025 SM00331 Sigma factor PP2C-like phosphatases BAA_4025 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAA_4030 SM00487 DEAD-like helicases superfamily BAA_4030 SM00490 helicase superfamily c-terminal domain BAA_4032 SM01409 BAA_4032 BAA_4033 SM00072 Guanylate kinase homologues. BAA_4036 SM00831 Cation transporter/ATPase, N-terminus BAA_4045 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BAA_4048 SM00851 MGS-like domain BAA_4048 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BAA_4048 SM01209 BAA_4048 BAA_4049 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BAA_4057 SM00363 S4 RNA-binding domain BAA_4062 SM00363 S4 RNA-binding domain BAA_4071 SM00864 Tubulin/FtsZ family, GTPase domain BAA_4071 SM00865 Tubulin/FtsZ family, C-terminal domain BAA_4072 SM00842 Cell division protein FtsA BAA_4080 SM00740 BAA_4080 BAA_4081 SM00740 BAA_4081 BAA_4087 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BAA_4095 SM00530 Helix-turn-helix XRE-family like proteins BAA_4098 SM00644 BAA_4098 BAA_4144 SM00382 ATPases associated with a variety of cellular activities BAA_4149 SM00530 Helix-turn-helix XRE-family like proteins BAA_4150 SM00530 Helix-turn-helix XRE-family like proteins BAA_4159 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAA_4169 SM00855 Phosphoglycerate mutase family BAA_4182 SM00878 Biotin carboxylase C-terminal domain BAA_4186 SM00670 Large family of predicted nucleotide-binding domains BAA_4191 SM00838 Elongation factor G C-terminus BAA_4206 SM00861 Transketolase, pyrimidine binding domain BAA_4212 SM00849 Metallo-beta-lactamase superfamily BAA_4226 SM00052 Putative diguanylate phosphodiesterase BAA_4245 SM00387 Histidine kinase-like ATPases BAA_4245 SM00388 His Kinase A (phosphoacceptor) domain BAA_4248 SM00354 helix_turn _helix lactose operon repressor BAA_4253 SM00642 Alpha-amylase domain BAA_4254 SM00642 Alpha-amylase domain BAA_4255 SM00382 ATPases associated with a variety of cellular activities BAA_4261 SM00382 ATPases associated with a variety of cellular activities BAA_4280 SM01007 Class II Aldolase and Adducin N-terminal domain BAA_4286 SM00267 diguanylate cyclase BAA_4293 SM01061 CAT RNA binding domain BAA_4295 SM00866 BAA_4295 BAA_4298 SM00849 Metallo-beta-lactamase superfamily BAA_4317 SM00387 Histidine kinase-like ATPases BAA_4319 SM00936 Penicillin-binding protein 5, C-terminal domain BAA_4320 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_4321 SM00382 ATPases associated with a variety of cellular activities BAA_4324 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_4328 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BAA_4347 SM00354 helix_turn _helix lactose operon repressor BAA_4351 SM00704 CDGSH-type zinc finger. Function unknown. BAA_4358 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_4358 SM00876 Biotin and Thiamin Synthesis associated domain BAA_4369 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_4376 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAA_4385 SM00849 Metallo-beta-lactamase superfamily BAA_4393 SM00382 ATPases associated with a variety of cellular activities BAA_4395 SM00062 Bacterial periplasmic substrate-binding proteins BAA_4395 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAA_4402 SM00861 Transketolase, pyrimidine binding domain BAA_4406 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BAA_4408 SM00091 PAS domain BAA_4408 SM00382 ATPases associated with a variety of cellular activities BAA_4413 SM00448 cheY-homologous receiver domain BAA_4414 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAA_4417 SM00363 S4 RNA-binding domain BAA_4418 SM00861 Transketolase, pyrimidine binding domain BAA_4425 SM00878 Biotin carboxylase C-terminal domain BAA_4434 SM00382 ATPases associated with a variety of cellular activities BAA_4437 SM00841 Elongation factor P, C-terminal BAA_4437 SM01185 BAA_4437 BAA_4444 SM00529 Helix-turn-helix diphteria tox regulatory element BAA_4449 SM00450 Rhodanese Homology Domain BAA_4450 SM00354 helix_turn _helix lactose operon repressor BAA_4461 SM00382 ATPases associated with a variety of cellular activities BAA_4462 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_4468 SM00487 DEAD-like helicases superfamily BAA_4468 SM00490 helicase superfamily c-terminal domain BAA_4476 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BAA_4484 SM00382 ATPases associated with a variety of cellular activities BAA_4495 SM01018 B12 binding domain BAA_4502 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_4504 SM00849 Metallo-beta-lactamase superfamily BAA_4512 SM00382 ATPases associated with a variety of cellular activities BAA_4525 SM00382 ATPases associated with a variety of cellular activities BAA_4528 SM00518 AP endonuclease family 2 BAA_4529 SM00487 DEAD-like helicases superfamily BAA_4529 SM00490 helicase superfamily c-terminal domain BAA_4537 SM00400 zinc finger BAA_4537 SM00493 BAA_4537 BAA_4537 SM00766 DNA primase DnaG DnaB-binding BAA_4541 SM00116 Domain in cystathionine beta-synthase and other proteins. BAA_4548 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_4554 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_4557 SM00271 DnaJ molecular chaperone homology domain BAA_4561 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_4563 SM00838 Elongation factor G C-terminus BAA_4569 SM00849 Metallo-beta-lactamase superfamily BAA_4572 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAA_4576 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_4578 SM01103 BAA_4578 BAA_4591 SM00954 Region found in RelA / SpoT proteins BAA_4593 SM00098 Alkaline phosphatase homologues BAA_4599 SM00855 Phosphoglycerate mutase family BAA_4610 SM00530 Helix-turn-helix XRE-family like proteins BAA_4615 SM00382 ATPases associated with a variety of cellular activities BAA_4634 SM00732 Likely ribonuclease with RNase H fold. BAA_4636 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAA_4643 SM00028 Tetratricopeptide repeats BAA_4647 SM00382 ATPases associated with a variety of cellular activities BAA_4654 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_4654 SM00954 Region found in RelA / SpoT proteins BAA_4663 SM01323 BAA_4663 BAA_4667 SM00382 ATPases associated with a variety of cellular activities BAA_4668 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAA_4673 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_4676 SM00257 Lysin motif BAA_4686 SM00382 ATPases associated with a variety of cellular activities BAA_4689 SM00448 cheY-homologous receiver domain BAA_4689 SM00862 Transcriptional regulatory protein, C terminal BAA_4691 SM01317 BAA_4691 BAA_4710 SM00257 Lysin motif BAA_4712 SM01004 Delta-aminolevulinic acid dehydratase BAA_4717 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_4720 SM00382 ATPases associated with a variety of cellular activities BAA_4720 SM00464 Found in ATP-dependent protease La (LON) BAA_4721 SM00382 ATPases associated with a variety of cellular activities BAA_4722 SM00382 ATPases associated with a variety of cellular activities BAA_4722 SM00994 ClpX C4-type zinc finger BAA_4722 SM01086 C-terminal, D2-small domain, of ClpB protein BAA_4733 SM00909 Sporulation and spore germination BAA_4741 SM00421 helix_turn_helix, Lux Regulon BAA_4749 SM00382 ATPases associated with a variety of cellular activities BAA_4750 SM00382 ATPases associated with a variety of cellular activities BAA_4752 SM00342 helix_turn_helix, arabinose operon control protein BAA_4752 SM00448 cheY-homologous receiver domain BAA_4756 SM00530 Helix-turn-helix XRE-family like proteins BAA_4761 SM00382 ATPases associated with a variety of cellular activities BAA_4772 SM00465 GIY-YIG type nucleases (URI domain) BAA_4774 SM00893 Electron transfer flavoprotein domain BAA_4775 SM00893 Electron transfer flavoprotein domain BAA_4788 SM00382 ATPases associated with a variety of cellular activities BAA_4789 SM00387 Histidine kinase-like ATPases BAA_4789 SM00388 His Kinase A (phosphoacceptor) domain BAA_4790 SM00448 cheY-homologous receiver domain BAA_4790 SM00862 Transcriptional regulatory protein, C terminal BAA_4793 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BAA_4797 SM00382 ATPases associated with a variety of cellular activities BAA_4800 SM00725 NEAr Transporter domain BAA_4802 SM00725 NEAr Transporter domain BAA_4804 SM00363 S4 RNA-binding domain BAA_4805 SM00463 Small MutS-related domain BAA_4805 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAA_4805 SM00534 ATPase domain of DNA mismatch repair MUTS family BAA_4806 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAA_4806 SM00481 DNA polymerase alpha chain like domain BAA_4806 SM00483 DNA polymerase X family BAA_4813 SM00873 B3/4 domain BAA_4813 SM00874 tRNA synthetase B5 domain BAA_4813 SM00896 Ferredoxin-fold anticodon binding domain BAA_4815 SM00967 RNA 2'-O ribose methyltransferase substrate binding BAA_4831 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAA_4833 SM00382 ATPases associated with a variety of cellular activities BAA_4838 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BAA_4841 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BAA_4841 SM01232 BAA_4841 BAA_4842 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BAA_4842 SM00474 3'-5' exonuclease BAA_4842 SM00475 5'-3' exonuclease BAA_4842 SM00482 DNA polymerase A domain BAA_4843 SM00091 PAS domain BAA_4843 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_4843 SM00387 Histidine kinase-like ATPases BAA_4843 SM00388 His Kinase A (phosphoacceptor) domain BAA_4844 SM00448 cheY-homologous receiver domain BAA_4844 SM00862 Transcriptional regulatory protein, C terminal BAA_4849 SM01329 BAA_4849 BAA_4858 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_4859 SM00919 Malic enzyme, NAD binding domain BAA_4859 SM01274 BAA_4859 BAA_4860 SM00481 DNA polymerase alpha chain like domain BAA_4869 SM00116 Domain in cystathionine beta-synthase and other proteins. BAA_4871 SM00849 Metallo-beta-lactamase superfamily BAA_4882 SM00530 Helix-turn-helix XRE-family like proteins BAA_4884 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BAA_4884 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BAA_4909 SM00981 BAA_4909 BAA_4919 SM00363 S4 RNA-binding domain BAA_4919 SM01390 BAA_4919 BAA_4922 SM00363 S4 RNA-binding domain BAA_4928 SM00116 Domain in cystathionine beta-synthase and other proteins. BAA_4931 SM00448 cheY-homologous receiver domain BAA_4931 SM00862 Transcriptional regulatory protein, C terminal BAA_4932 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_4932 SM00387 Histidine kinase-like ATPases BAA_4932 SM00388 His Kinase A (phosphoacceptor) domain BAA_4933 SM00248 ankyrin repeats BAA_4940 SM00354 helix_turn _helix lactose operon repressor BAA_4950 SM00843 BAA_4950 BAA_4958 SM00849 Metallo-beta-lactamase superfamily BAA_4962 SM00642 Alpha-amylase domain BAA_4966 SM00420 helix_turn_helix, Deoxyribose operon repressor BAA_4967 SM00363 S4 RNA-binding domain BAA_4972 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_4984 SM00852 Probable molybdopterin binding domain BAA_4992 SM00450 Rhodanese Homology Domain BAA_5010 SM00382 ATPases associated with a variety of cellular activities BAA_5014 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_5016 SM00382 ATPases associated with a variety of cellular activities BAA_5025 SM00014 Acid phosphatase homologues BAA_5028 SM00852 Probable molybdopterin binding domain BAA_5040 SM00387 Histidine kinase-like ATPases BAA_5041 SM00387 Histidine kinase-like ATPases BAA_5041 SM00388 His Kinase A (phosphoacceptor) domain BAA_5048 SM00382 ATPases associated with a variety of cellular activities BAA_5059 SM00947 Carbonic anhydrase BAA_5060 SM01234 BAA_5060 BAA_5065 SM00894 Excalibur calcium-binding domain BAA_5076 SM00899 BAA_5076 BAA_5079 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_5079 SM00387 Histidine kinase-like ATPases BAA_5079 SM00388 His Kinase A (phosphoacceptor) domain BAA_5080 SM00448 cheY-homologous receiver domain BAA_5080 SM00862 Transcriptional regulatory protein, C terminal BAA_5086 SM00046 Diacylglycerol kinase catalytic domain (presumed) BAA_5096 SM00382 ATPases associated with a variety of cellular activities BAA_5097 SM00342 helix_turn_helix, arabinose operon control protein BAA_5097 SM00871 Bacterial transcription activator, effector binding domain BAA_5098 SM00448 cheY-homologous receiver domain BAA_5098 SM00862 Transcriptional regulatory protein, C terminal BAA_5099 SM00387 Histidine kinase-like ATPases BAA_5104 SM00382 ATPases associated with a variety of cellular activities BAA_5109 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAA_5109 SM00866 BAA_5109 BAA_5117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_5117 SM00387 Histidine kinase-like ATPases BAA_5117 SM00388 His Kinase A (phosphoacceptor) domain BAA_5118 SM00448 cheY-homologous receiver domain BAA_5118 SM00862 Transcriptional regulatory protein, C terminal BAA_5119 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAA_5127 SM00357 Cold shock protein domain BAA_5135 SM00642 Alpha-amylase domain BAA_5168 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_5170 SM00344 helix_turn_helix ASNC type BAA_5177 SM01298 BAA_5177 BAA_5178 SM00479 BAA_5178 BAA_5199 SM00871 Bacterial transcription activator, effector binding domain BAA_5211 SM00382 ATPases associated with a variety of cellular activities BAA_5216 SM00860 SMI1 / KNR4 family BAA_5229 SM00420 helix_turn_helix, Deoxyribose operon repressor BAA_5236 SM00422 helix_turn_helix, mercury resistance BAA_5239 SM00855 Phosphoglycerate mutase family BAA_5241 SM00729 Elongator protein 3, MiaB family, Radical SAM BAA_5253 SM00382 ATPases associated with a variety of cellular activities BAA_5257 SM00382 ATPases associated with a variety of cellular activities BAA_5257 SM00930 BAA_5257 BAA_5262 SM00493 BAA_5262 BAA_5277 SM00849 Metallo-beta-lactamase superfamily BAA_5287 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_5287 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_5301 SM00530 Helix-turn-helix XRE-family like proteins BAA_5306 SM00448 cheY-homologous receiver domain BAA_5306 SM00862 Transcriptional regulatory protein, C terminal BAA_5307 SM00387 Histidine kinase-like ATPases BAA_5307 SM00388 His Kinase A (phosphoacceptor) domain BAA_5311 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_5311 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_5315 SM00347 helix_turn_helix multiple antibiotic resistance protein BAA_5343 SM00363 S4 RNA-binding domain BAA_5345 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BAA_5346 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_5356 SM00382 ATPases associated with a variety of cellular activities BAA_5360 SM00448 cheY-homologous receiver domain BAA_5360 SM00862 Transcriptional regulatory protein, C terminal BAA_5365 SM00316 Ribosomal protein S1-like RNA-binding domain BAA_5365 SM00357 Cold shock protein domain BAA_5365 SM00955 BAA_5365 BAA_5387 SM00507 HNH nucleases BAA_5394 SM01192 BAA_5394 BAA_5394 SM01193 BAA_5394 BAA_5398 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BAA_5418 SM00028 Tetratricopeptide repeats BAA_5426 SM00487 DEAD-like helicases superfamily BAA_5426 SM00490 helicase superfamily c-terminal domain BAA_5430 SM00422 helix_turn_helix, mercury resistance BAA_5434 SM00530 Helix-turn-helix XRE-family like proteins BAA_5437 SM00422 helix_turn_helix, mercury resistance BAA_5439 SM00382 ATPases associated with a variety of cellular activities BAA_5441 SM00382 ATPases associated with a variety of cellular activities BAA_5443 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAA_5443 SM00245 tail specific protease BAA_5445 SM00382 ATPases associated with a variety of cellular activities BAA_5450 SM00957 SecA DEAD-like domain BAA_5450 SM00958 SecA preprotein cross-linking domain BAA_5453 SM00357 Cold shock protein domain BAA_5455 SM00487 DEAD-like helicases superfamily BAA_5455 SM00490 helicase superfamily c-terminal domain BAA_5462 SM00984 UDP binding domain BAA_5465 SM00382 ATPases associated with a variety of cellular activities BAA_5466 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BAA_5501 SM00287 Bacterial SH3 domain homologues BAA_5508 SM00287 Bacterial SH3 domain homologues BAA_5514 SM00487 DEAD-like helicases superfamily BAA_5514 SM00490 helicase superfamily c-terminal domain BAA_5523 SM00382 ATPases associated with a variety of cellular activities BAA_5525 SM00530 Helix-turn-helix XRE-family like proteins BAA_5530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_5530 SM00387 Histidine kinase-like ATPases BAA_5530 SM00388 His Kinase A (phosphoacceptor) domain BAA_5531 SM00448 cheY-homologous receiver domain BAA_5531 SM00862 Transcriptional regulatory protein, C terminal BAA_5537 SM00287 Bacterial SH3 domain homologues BAA_5537 SM00382 ATPases associated with a variety of cellular activities BAA_5539 SM00984 UDP binding domain BAA_5553 SM00382 ATPases associated with a variety of cellular activities BAA_5571 SM00052 Putative diguanylate phosphodiesterase BAA_5571 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BAA_5571 SM00091 PAS domain BAA_5571 SM00267 diguanylate cyclase BAA_5575 SM00382 ATPases associated with a variety of cellular activities BAA_5589 SM00226 Low molecular weight phosphatase family BAA_5592 SM00903 Flavin reductase like domain BAA_5599 SM00937 BAA_5599 BAA_5602 SM00357 Cold shock protein domain BAA_5602 SM00382 ATPases associated with a variety of cellular activities BAA_5602 SM00959 Rho termination factor, N-terminal domain BAA_5606 SM00448 cheY-homologous receiver domain BAA_5616 SM00155 Phospholipase D. Active site motifs. BAA_5618 SM00052 Putative diguanylate phosphodiesterase BAA_5618 SM00267 diguanylate cyclase BAA_5622 SM00421 helix_turn_helix, Lux Regulon BAA_5622 SM00448 cheY-homologous receiver domain BAA_5623 SM00387 Histidine kinase-like ATPases BAA_5625 SM00382 ATPases associated with a variety of cellular activities BAA_5637 SM00836 DALR anticodon binding domain BAA_5637 SM01016 Arginyl tRNA synthetase N terminal dom BAA_5646 SM00422 helix_turn_helix, mercury resistance BAA_5653 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAA_5655 SM00382 ATPases associated with a variety of cellular activities BAA_5665 SM00936 Penicillin-binding protein 5, C-terminal domain BAA_5675 SM00986 Uracil DNA glycosylase superfamily BAA_5675 SM00987 UreE urease accessory protein, C-terminal domain BAA_5677 SM00382 ATPases associated with a variety of cellular activities BAA_5679 SM00354 helix_turn _helix lactose operon repressor BAA_5687 SM00100 Cyclic nucleotide-monophosphate binding domain BAA_5689 SM00421 helix_turn_helix, Lux Regulon BAA_5689 SM00448 cheY-homologous receiver domain BAA_5693 SM00267 diguanylate cyclase BAA_5696 SM00448 cheY-homologous receiver domain BAA_5696 SM00850 LytTr DNA-binding domain BAA_5703 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAA_5708 SM00382 ATPases associated with a variety of cellular activities BAA_5721 SM00448 cheY-homologous receiver domain BAA_5721 SM00850 LytTr DNA-binding domain BAA_5722 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BAA_5722 SM00387 Histidine kinase-like ATPases BAA_5734 SM00487 DEAD-like helicases superfamily BAA_5734 SM00490 helicase superfamily c-terminal domain BAA_5736 SM01240 BAA_5736 BAA_5741 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAA_5742 SM00849 Metallo-beta-lactamase superfamily BAA_5745 SM00091 PAS domain BAA_5745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAA_5745 SM00387 Histidine kinase-like ATPases BAA_5745 SM00388 His Kinase A (phosphoacceptor) domain BAA_5746 SM00448 cheY-homologous receiver domain BAA_5746 SM00862 Transcriptional regulatory protein, C terminal BAA_5751 SM00788 Adenylosuccinate synthetase BAA_5754 SM00267 diguanylate cyclase BAA_5763 SM00470 ParB-like nuclease domain BAA_5765 SM00470 ParB-like nuclease domain BAA_5767 SM01228 BAA_5767 BAA_5769 SM00393 Putative single-stranded nucleic acids-binding domain BAA_5769 SM01245 BAA_5769 BAA_A0013 SM00507 HNH nucleases BAA_A0014 SM00487 DEAD-like helicases superfamily BAA_A0061 SM00530 Helix-turn-helix XRE-family like proteins BAA_A0064 SM00843 BAA_A0064 BAA_A0067 SM00864 Tubulin/FtsZ family, GTPase domain BAA_A0123 SM00014 Acid phosphatase homologues BAA_A0129 SM00984 UDP binding domain BAA_A0158 SM00857 Resolvase, N terminal domain BAA_A0168 SM00758 BAA_A0168 BAA_A0169 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_A0193 SM00860 SMI1 / KNR4 family BAA_A0203 SM00954 Region found in RelA / SpoT proteins BAA_A0209 SM00028 Tetratricopeptide repeats BAA_A0212 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAA_A0216 SM00318 Staphylococcal nuclease homologues BAA_A0218 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAA_A0218 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAA_A0218 SM00493 BAA_A0218 BAA_B0049 SM00646 BAA_B0049 BAA_B0069 SM00854 Bacterial capsule synthesis protein PGA_cap BAA_B0073 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor