BAMEG_0001 SM00382 ATPases associated with a variety of cellular activities BAMEG_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BAMEG_0002 SM00480 DNA polymerase III beta subunit BAMEG_0005 SM00387 Histidine kinase-like ATPases BAMEG_0005 SM00433 TopoisomeraseII BAMEG_0006 SM00434 DNA Topoisomerase IV BAMEG_0014 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMEG_0014 SM01240 BAMEG_0014 BAMEG_0015 SM00936 Penicillin-binding protein 5, C-terminal domain BAMEG_0026 SM00382 ATPases associated with a variety of cellular activities BAMEG_0028 SM00493 BAMEG_0028 BAMEG_0046 SM00966 SpoVT / AbrB like domain BAMEG_0049 SM00493 BAMEG_0049 BAMEG_0050 SM00650 Ribosomal RNA adenine dimethylases BAMEG_0060 SM01400 BAMEG_0060 BAMEG_0063 SM00487 DEAD-like helicases superfamily BAMEG_0063 SM00490 helicase superfamily c-terminal domain BAMEG_0063 SM00982 BAMEG_0063 BAMEG_0063 SM01058 CarD-like/TRCF domain BAMEG_0064 SM00966 SpoVT / AbrB like domain BAMEG_0067 SM00363 S4 RNA-binding domain BAMEG_0071 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_0074 SM00331 Sigma factor PP2C-like phosphatases BAMEG_0074 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAMEG_0075 SM00977 TilS substrate C-terminal domain BAMEG_0077 SM00382 ATPases associated with a variety of cellular activities BAMEG_0085 SM00905 Dihydroneopterin aldolase BAMEG_0087 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_0097 SM00382 ATPases associated with a variety of cellular activities BAMEG_0097 SM01086 C-terminal, D2-small domain, of ClpB protein BAMEG_0098 SM00382 ATPases associated with a variety of cellular activities BAMEG_0100 SM00670 Large family of predicted nucleotide-binding domains BAMEG_0105 SM00840 BAMEG_0105 BAMEG_0106 SM00535 Ribonuclease III family BAMEG_0107 SM00967 RNA 2'-O ribose methyltransferase substrate binding BAMEG_0109 SM00421 helix_turn_helix, Lux Regulon BAMEG_0111 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BAMEG_0112 SM00649 Ribosomal protein L11/L12 BAMEG_0119 SM00663 RNA polymerase I subunit A N-terminus BAMEG_0123 SM00838 Elongation factor G C-terminus BAMEG_0123 SM00889 Elongation factor G, domain IV BAMEG_0125 SM01403 BAMEG_0125 BAMEG_0129 SM01382 BAMEG_0129 BAMEG_0129 SM01383 BAMEG_0129 BAMEG_0132 SM00322 K homology RNA-binding domain BAMEG_0136 SM01374 BAMEG_0136 BAMEG_0137 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BAMEG_0149 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_0153 SM00662 RNA polymerases D BAMEG_0155 SM00382 ATPases associated with a variety of cellular activities BAMEG_0156 SM00382 ATPases associated with a variety of cellular activities BAMEG_0163 SM00646 BAMEG_0163 BAMEG_0166 SM01251 BAMEG_0166 BAMEG_0191 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_0191 SM00895 BAMEG_0191 BAMEG_0195 SM01350 BAMEG_0195 BAMEG_0206 SM00382 ATPases associated with a variety of cellular activities BAMEG_0206 SM00930 BAMEG_0206 BAMEG_0209 SM00829 Enoylreductase BAMEG_0220 SM00382 ATPases associated with a variety of cellular activities BAMEG_0221 SM00382 ATPases associated with a variety of cellular activities BAMEG_0224 SM00342 helix_turn_helix, arabinose operon control protein BAMEG_0241 SM00563 Phosphate acyltransferases BAMEG_0243 SM00354 helix_turn _helix lactose operon repressor BAMEG_0254 SM00382 ATPases associated with a variety of cellular activities BAMEG_0260 SM00382 ATPases associated with a variety of cellular activities BAMEG_0261 SM00382 ATPases associated with a variety of cellular activities BAMEG_0276 SM00487 DEAD-like helicases superfamily BAMEG_0276 SM00490 helicase superfamily c-terminal domain BAMEG_0281 SM01005 Alanine racemase, C-terminal domain BAMEG_0284 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_0284 SM00732 Likely ribonuclease with RNase H fold. BAMEG_0285 SM00731 SprT homologues. BAMEG_0307 SM00382 ATPases associated with a variety of cellular activities BAMEG_0308 SM00881 CoA binding domain BAMEG_0311 SM00883 Chaperonin 10 Kd subunit BAMEG_0317 SM00448 cheY-homologous receiver domain BAMEG_0317 SM00862 Transcriptional regulatory protein, C terminal BAMEG_0318 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_0318 SM00387 Histidine kinase-like ATPases BAMEG_0318 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_0338 SM00382 ATPases associated with a variety of cellular activities BAMEG_0339 SM00387 Histidine kinase-like ATPases BAMEG_0339 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_0340 SM00448 cheY-homologous receiver domain BAMEG_0340 SM00862 Transcriptional regulatory protein, C terminal BAMEG_0346 SM01001 AIR carboxylase BAMEG_0348 SM00998 Adenylosuccinate lyase C-terminus BAMEG_0351 SM01211 BAMEG_0351 BAMEG_0356 SM00798 AICARFT/IMPCHase bienzyme BAMEG_0356 SM00851 MGS-like domain BAMEG_0357 SM01209 BAMEG_0357 BAMEG_0357 SM01210 BAMEG_0357 BAMEG_0359 SM00244 prohibitin homologues BAMEG_0363 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMEG_0363 SM00292 breast cancer carboxy-terminal domain BAMEG_0363 SM00532 Ligase N family BAMEG_0370 SM00382 ATPases associated with a variety of cellular activities BAMEG_0370 SM00930 BAMEG_0370 BAMEG_0377 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_0381 SM00845 GatB domain BAMEG_0382 SM00046 Diacylglycerol kinase catalytic domain (presumed) BAMEG_0385 SM00382 ATPases associated with a variety of cellular activities BAMEG_0399 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAMEG_0408 SM01007 Class II Aldolase and Adducin N-terminal domain BAMEG_0431 SM00062 Bacterial periplasmic substrate-binding proteins BAMEG_0431 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAMEG_0432 SM00382 ATPases associated with a variety of cellular activities BAMEG_0433 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_0433 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_0434 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_0434 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_0435 SM00642 Alpha-amylase domain BAMEG_0440 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAMEG_0440 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAMEG_0440 SM00493 BAMEG_0440 BAMEG_0445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_0445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_0451 SM00382 ATPases associated with a variety of cellular activities BAMEG_0452 SM00382 ATPases associated with a variety of cellular activities BAMEG_0453 SM00060 Fibronectin type 3 domain BAMEG_0453 SM00636 BAMEG_0453 BAMEG_0453 SM00637 BAMEG_0453 BAMEG_0459 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_0464 SM00946 Prolyl-tRNA synthetase, C-terminal BAMEG_0474 SM00831 Cation transporter/ATPase, N-terminus BAMEG_0476 SM00226 Low molecular weight phosphatase family BAMEG_0497 SM00478 endonuclease III BAMEG_0504 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_0505 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_0511 SM00382 ATPases associated with a variety of cellular activities BAMEG_0555 SM00644 BAMEG_0555 BAMEG_0558 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_0566 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BAMEG_0572 SM00740 BAMEG_0572 BAMEG_0573 SM00740 BAMEG_0573 BAMEG_0581 SM00842 Cell division protein FtsA BAMEG_0582 SM00864 Tubulin/FtsZ family, GTPase domain BAMEG_0582 SM00865 Tubulin/FtsZ family, C-terminal domain BAMEG_0591 SM00363 S4 RNA-binding domain BAMEG_0596 SM00363 S4 RNA-binding domain BAMEG_0605 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BAMEG_0606 SM00851 MGS-like domain BAMEG_0606 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BAMEG_0606 SM01209 BAMEG_0606 BAMEG_0609 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BAMEG_0619 SM00831 Cation transporter/ATPase, N-terminus BAMEG_0622 SM00072 Guanylate kinase homologues. BAMEG_0623 SM01409 BAMEG_0623 BAMEG_0625 SM00487 DEAD-like helicases superfamily BAMEG_0625 SM00490 helicase superfamily c-terminal domain BAMEG_0630 SM00331 Sigma factor PP2C-like phosphatases BAMEG_0630 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAMEG_0631 SM00220 Serine/Threonine protein kinases, catalytic domain BAMEG_0631 SM00740 BAMEG_0631 BAMEG_0634 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BAMEG_0637 SM01120 BAMEG_0637 BAMEG_0637 SM01121 BAMEG_0637 BAMEG_0638 SM00487 DEAD-like helicases superfamily BAMEG_0638 SM00490 helicase superfamily c-terminal domain BAMEG_0641 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BAMEG_0642 SM00822 BAMEG_0642 BAMEG_0644 SM00358 Double-stranded RNA binding motif BAMEG_0644 SM00535 Ribonuclease III family BAMEG_0645 SM00968 SMC proteins Flexible Hinge Domain BAMEG_0646 SM00382 ATPases associated with a variety of cellular activities BAMEG_0646 SM00962 SRP54-type protein, GTPase domain BAMEG_0646 SM00963 SRP54-type protein, helical bundle domain BAMEG_0648 SM00382 ATPases associated with a variety of cellular activities BAMEG_0648 SM00962 SRP54-type protein, GTPase domain BAMEG_0648 SM00963 SRP54-type protein, helical bundle domain BAMEG_0659 SM00881 CoA binding domain BAMEG_0661 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAMEG_0661 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAMEG_0661 SM00493 BAMEG_0661 BAMEG_0665 SM00382 ATPases associated with a variety of cellular activities BAMEG_0665 SM01086 C-terminal, D2-small domain, of ClpB protein BAMEG_0674 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMEG_0676 SM00479 BAMEG_0676 BAMEG_0676 SM00481 DNA polymerase alpha chain like domain BAMEG_0678 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_0678 SM00322 K homology RNA-binding domain BAMEG_0685 SM00904 Riboflavin kinase BAMEG_0686 SM01387 BAMEG_0686 BAMEG_0687 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_0687 SM00322 K homology RNA-binding domain BAMEG_0693 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAMEG_0695 SM01130 BAMEG_0695 BAMEG_0696 SM00849 Metallo-beta-lactamase superfamily BAMEG_0699 SM00382 ATPases associated with a variety of cellular activities BAMEG_0699 SM00843 BAMEG_0699 BAMEG_0701 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_0701 SM00866 BAMEG_0701 BAMEG_0703 SM00382 ATPases associated with a variety of cellular activities BAMEG_0714 SM00852 Probable molybdopterin binding domain BAMEG_0715 SM00382 ATPases associated with a variety of cellular activities BAMEG_0717 SM00322 K homology RNA-binding domain BAMEG_0717 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_0723 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_0726 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAMEG_0726 SM00534 ATPase domain of DNA mismatch repair MUTS family BAMEG_0727 SM00853 MutL C terminal dimerisation domain BAMEG_0727 SM01340 BAMEG_0727 BAMEG_0728 SM00382 ATPases associated with a variety of cellular activities BAMEG_0731 SM00448 cheY-homologous receiver domain BAMEG_0731 SM00862 Transcriptional regulatory protein, C terminal BAMEG_0732 SM00387 Histidine kinase-like ATPases BAMEG_0732 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_0738 SM00257 Lysin motif BAMEG_0741 SM00148 Phospholipase C, catalytic domain (part); domain X BAMEG_0745 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_0751 SM00052 Putative diguanylate phosphodiesterase BAMEG_0751 SM00091 PAS domain BAMEG_0751 SM00267 diguanylate cyclase BAMEG_0760 SM00478 endonuclease III BAMEG_0762 SM00342 helix_turn_helix, arabinose operon control protein BAMEG_0768 SM00382 ATPases associated with a variety of cellular activities BAMEG_0774 SM00411 bacterial (prokaryotic) histone like domain BAMEG_0778 SM00636 BAMEG_0778 BAMEG_0785 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMEG_0785 SM01134 BAMEG_0785 BAMEG_0788 SM00287 Bacterial SH3 domain homologues BAMEG_0794 SM00382 ATPases associated with a variety of cellular activities BAMEG_0799 SM00422 helix_turn_helix, mercury resistance BAMEG_0800 SM01230 BAMEG_0800 BAMEG_0806 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_0816 SM00382 ATPases associated with a variety of cellular activities BAMEG_0835 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_0868 SM00287 Bacterial SH3 domain homologues BAMEG_0868 SM00644 BAMEG_0868 BAMEG_0875 SM00028 Tetratricopeptide repeats BAMEG_0882 SM00857 Resolvase, N terminal domain BAMEG_0886 SM00062 Bacterial periplasmic substrate-binding proteins BAMEG_0887 SM00382 ATPases associated with a variety of cellular activities BAMEG_0891 SM00861 Transketolase, pyrimidine binding domain BAMEG_0894 SM00382 ATPases associated with a variety of cellular activities BAMEG_0895 SM00382 ATPases associated with a variety of cellular activities BAMEG_0898 SM00644 BAMEG_0898 BAMEG_0926 SM01058 CarD-like/TRCF domain BAMEG_0932 SM00091 PAS domain BAMEG_0932 SM00387 Histidine kinase-like ATPases BAMEG_0932 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_0935 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BAMEG_0936 SM00644 BAMEG_0936 BAMEG_0936 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BAMEG_0949 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMEG_0958 SM00382 ATPases associated with a variety of cellular activities BAMEG_0962 SM00479 BAMEG_0962 BAMEG_0966 SM00257 Lysin motif BAMEG_0966 SM00636 BAMEG_0966 BAMEG_0969 SM01207 BAMEG_0969 BAMEG_0972 SM00448 cheY-homologous receiver domain BAMEG_0972 SM00862 Transcriptional regulatory protein, C terminal BAMEG_0973 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMEG_0974 SM00881 CoA binding domain BAMEG_0975 SM00387 Histidine kinase-like ATPases BAMEG_0975 SM00433 TopoisomeraseII BAMEG_0976 SM00434 DNA Topoisomerase IV BAMEG_0979 SM00382 ATPases associated with a variety of cellular activities BAMEG_1002 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMEG_1002 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BAMEG_1006 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_1009 SM00852 Probable molybdopterin binding domain BAMEG_1033 SM01022 BAMEG_1033 BAMEG_1038 SM00357 Cold shock protein domain BAMEG_1039 SM00479 BAMEG_1039 BAMEG_1049 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BAMEG_1064 SM00028 Tetratricopeptide repeats BAMEG_1066 SM00829 Enoylreductase BAMEG_1067 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1080 SM00642 Alpha-amylase domain BAMEG_1083 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAMEG_1083 SM00534 ATPase domain of DNA mismatch repair MUTS family BAMEG_1085 SM00855 Phosphoglycerate mutase family BAMEG_1086 SM00829 Enoylreductase BAMEG_1113 SM00829 Enoylreductase BAMEG_1114 SM00849 Metallo-beta-lactamase superfamily BAMEG_1127 SM00641 Glycosyl hydrolases family 25 BAMEG_1128 SM00849 Metallo-beta-lactamase superfamily BAMEG_1133 SM00382 ATPases associated with a variety of cellular activities BAMEG_1137 SM00871 Bacterial transcription activator, effector binding domain BAMEG_1146 SM00636 BAMEG_1146 BAMEG_1147 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1148 SM00248 ankyrin repeats BAMEG_1162 SM00849 Metallo-beta-lactamase superfamily BAMEG_1171 SM00866 BAMEG_1171 BAMEG_1177 SM00914 BAMEG_1177 BAMEG_1186 SM01276 BAMEG_1186 BAMEG_1189 SM00829 Enoylreductase BAMEG_1192 SM00829 Enoylreductase BAMEG_1195 SM00861 Transketolase, pyrimidine binding domain BAMEG_1196 SM01350 BAMEG_1196 BAMEG_1204 SM00422 helix_turn_helix, mercury resistance BAMEG_1205 SM01091 Transporter associated domain BAMEG_1210 SM00028 Tetratricopeptide repeats BAMEG_1222 SM00382 ATPases associated with a variety of cellular activities BAMEG_1224 SM01266 BAMEG_1224 BAMEG_1236 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_1239 SM00382 ATPases associated with a variety of cellular activities BAMEG_1251 SM01207 BAMEG_1251 BAMEG_1252 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_1261 SM00382 ATPases associated with a variety of cellular activities BAMEG_1275 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1278 SM00382 ATPases associated with a variety of cellular activities BAMEG_1283 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_1293 SM00287 Bacterial SH3 domain homologues BAMEG_1297 SM00342 helix_turn_helix, arabinose operon control protein BAMEG_1309 SM00344 helix_turn_helix ASNC type BAMEG_1318 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1322 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BAMEG_1328 SM00319 Homologues of the ligand binding domain of Tar BAMEG_1329 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_1329 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_1336 SM00028 Tetratricopeptide repeats BAMEG_1337 SM00354 helix_turn _helix lactose operon repressor BAMEG_1356 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_1358 SM00448 cheY-homologous receiver domain BAMEG_1358 SM00862 Transcriptional regulatory protein, C terminal BAMEG_1359 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_1359 SM00387 Histidine kinase-like ATPases BAMEG_1359 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_1361 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1363 SM00382 ATPases associated with a variety of cellular activities BAMEG_1373 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_1384 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_1384 SM00387 Histidine kinase-like ATPases BAMEG_1384 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_1385 SM00448 cheY-homologous receiver domain BAMEG_1385 SM00862 Transcriptional regulatory protein, C terminal BAMEG_1393 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_1407 SM00344 helix_turn_helix ASNC type BAMEG_1411 SM00028 Tetratricopeptide repeats BAMEG_1413 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1416 SM00226 Low molecular weight phosphatase family BAMEG_1421 SM00382 ATPases associated with a variety of cellular activities BAMEG_1447 SM01060 BAMEG_1447 BAMEG_1457 SM00387 Histidine kinase-like ATPases BAMEG_1458 SM00448 cheY-homologous receiver domain BAMEG_1466 SM00919 Malic enzyme, NAD binding domain BAMEG_1466 SM01274 BAMEG_1466 BAMEG_1474 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_1475 SM00870 BAMEG_1475 BAMEG_1492 SM00849 Metallo-beta-lactamase superfamily BAMEG_1506 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1510 SM00346 helix_turn_helix isocitrate lyase regulation BAMEG_1511 SM00796 Allophanate hydrolase subunit 1 BAMEG_1512 SM00797 Allophanate hydrolase subunit 2 BAMEG_1540 SM00448 cheY-homologous receiver domain BAMEG_1540 SM00862 Transcriptional regulatory protein, C terminal BAMEG_1541 SM00387 Histidine kinase-like ATPases BAMEG_1541 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_1546 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_1551 SM00342 helix_turn_helix, arabinose operon control protein BAMEG_1551 SM00871 Bacterial transcription activator, effector binding domain BAMEG_1556 SM00382 ATPases associated with a variety of cellular activities BAMEG_1558 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_1559 SM00382 ATPases associated with a variety of cellular activities BAMEG_1566 SM00889 Elongation factor G, domain IV BAMEG_1567 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_1578 SM01060 BAMEG_1578 BAMEG_1597 SM00850 LytTr DNA-binding domain BAMEG_1602 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_1604 SM00098 Alkaline phosphatase homologues BAMEG_1608 SM00346 helix_turn_helix isocitrate lyase regulation BAMEG_1611 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BAMEG_1615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_1621 SM01133 BAMEG_1621 BAMEG_1626 SM00382 ATPases associated with a variety of cellular activities BAMEG_1637 SM00287 Bacterial SH3 domain homologues BAMEG_1645 SM00830 Chorismate mutase type II BAMEG_1656 SM00382 ATPases associated with a variety of cellular activities BAMEG_1676 SM00028 Tetratricopeptide repeats BAMEG_1682 SM00382 ATPases associated with a variety of cellular activities BAMEG_1683 SM00062 Bacterial periplasmic substrate-binding proteins BAMEG_1694 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_1695 SM00382 ATPases associated with a variety of cellular activities BAMEG_1736 SM00448 cheY-homologous receiver domain BAMEG_1736 SM00862 Transcriptional regulatory protein, C terminal BAMEG_1737 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_1737 SM00387 Histidine kinase-like ATPases BAMEG_1737 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_1738 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BAMEG_1746 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAMEG_1760 SM00091 PAS domain BAMEG_1760 SM00382 ATPases associated with a variety of cellular activities BAMEG_1764 SM01130 BAMEG_1764 BAMEG_1770 SM01131 BAMEG_1770 BAMEG_1778 SM00341 Helicase and RNase D C-terminal BAMEG_1778 SM00487 DEAD-like helicases superfamily BAMEG_1778 SM00490 helicase superfamily c-terminal domain BAMEG_1778 SM00956 BAMEG_1778 BAMEG_1792 SM00849 Metallo-beta-lactamase superfamily BAMEG_1803 SM00060 Fibronectin type 3 domain BAMEG_1803 SM00495 Chitin-binding domain type 3 BAMEG_1810 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMEG_1810 SM00382 ATPases associated with a variety of cellular activities BAMEG_1821 SM00861 Transketolase, pyrimidine binding domain BAMEG_1831 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMEG_1831 SM01134 BAMEG_1831 BAMEG_1835 SM00382 ATPases associated with a variety of cellular activities BAMEG_1858 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_1862 SM00871 Bacterial transcription activator, effector binding domain BAMEG_1867 SM00642 Alpha-amylase domain BAMEG_1889 SM00465 GIY-YIG type nucleases (URI domain) BAMEG_1910 SM00480 DNA polymerase III beta subunit BAMEG_1923 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_1931 SM00422 helix_turn_helix, mercury resistance BAMEG_1943 SM00740 BAMEG_1943 BAMEG_1944 SM00829 Enoylreductase BAMEG_1947 SM00387 Histidine kinase-like ATPases BAMEG_1947 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_1950 SM00382 ATPases associated with a variety of cellular activities BAMEG_1956 SM00091 PAS domain BAMEG_1956 SM00387 Histidine kinase-like ATPases BAMEG_1956 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_1985 SM01209 BAMEG_1985 BAMEG_1986 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_1993 SM00382 ATPases associated with a variety of cellular activities BAMEG_1996 SM00382 ATPases associated with a variety of cellular activities BAMEG_1998 SM00387 Histidine kinase-like ATPases BAMEG_2000 SM00448 cheY-homologous receiver domain BAMEG_2000 SM00862 Transcriptional regulatory protein, C terminal BAMEG_2012 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_2015 SM00342 helix_turn_helix, arabinose operon control protein BAMEG_2021 SM00422 helix_turn_helix, mercury resistance BAMEG_2021 SM00871 Bacterial transcription activator, effector binding domain BAMEG_2025 SM00382 ATPases associated with a variety of cellular activities BAMEG_2039 SM00448 cheY-homologous receiver domain BAMEG_2039 SM00862 Transcriptional regulatory protein, C terminal BAMEG_2040 SM00387 Histidine kinase-like ATPases BAMEG_2040 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_2052 SM00878 Biotin carboxylase C-terminal domain BAMEG_2058 SM00382 ATPases associated with a variety of cellular activities BAMEG_2061 SM00450 Rhodanese Homology Domain BAMEG_2061 SM00849 Metallo-beta-lactamase superfamily BAMEG_2063 SM00860 SMI1 / KNR4 family BAMEG_2066 SM00052 Putative diguanylate phosphodiesterase BAMEG_2066 SM00091 PAS domain BAMEG_2066 SM00267 diguanylate cyclase BAMEG_2068 SM00382 ATPases associated with a variety of cellular activities BAMEG_2072 SM00646 BAMEG_2072 BAMEG_2076 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_2093 SM00354 helix_turn _helix lactose operon repressor BAMEG_2094 SM00014 Acid phosphatase homologues BAMEG_2113 SM00855 Phosphoglycerate mutase family BAMEG_2114 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_2119 SM00382 ATPases associated with a variety of cellular activities BAMEG_2127 SM00487 DEAD-like helicases superfamily BAMEG_2127 SM00490 helicase superfamily c-terminal domain BAMEG_2130 SM00849 Metallo-beta-lactamase superfamily BAMEG_2134 SM01207 BAMEG_2134 BAMEG_2153 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_2155 SM00646 BAMEG_2155 BAMEG_2156 SM00382 ATPases associated with a variety of cellular activities BAMEG_2157 SM00382 ATPases associated with a variety of cellular activities BAMEG_2164 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAMEG_2176 SM00357 Cold shock protein domain BAMEG_2184 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_2189 SM01059 Chloramphenicol acetyltransferase BAMEG_2193 SM00849 Metallo-beta-lactamase superfamily BAMEG_2198 SM00849 Metallo-beta-lactamase superfamily BAMEG_2212 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMEG_2214 SM00363 S4 RNA-binding domain BAMEG_2223 SM00411 bacterial (prokaryotic) histone like domain BAMEG_2227 SM00923 MbtH-like protein BAMEG_2228 SM00823 Phosphopantetheine attachment site BAMEG_2228 SM00824 Thioesterase BAMEG_2236 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_2265 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BAMEG_2276 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_2281 SM00860 SMI1 / KNR4 family BAMEG_2284 SM00014 Acid phosphatase homologues BAMEG_2287 SM00219 Tyrosine kinase, catalytic domain BAMEG_2295 SM00382 ATPases associated with a variety of cellular activities BAMEG_2298 SM00882 Coenzyme A transferase BAMEG_2299 SM00882 Coenzyme A transferase BAMEG_2303 SM00387 Histidine kinase-like ATPases BAMEG_2303 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_2306 SM01091 Transporter associated domain BAMEG_2314 SM00382 ATPases associated with a variety of cellular activities BAMEG_2328 SM00829 Enoylreductase BAMEG_2331 SM00421 helix_turn_helix, Lux Regulon BAMEG_2331 SM00448 cheY-homologous receiver domain BAMEG_2332 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BAMEG_2354 SM00563 Phosphate acyltransferases BAMEG_2367 SM00382 ATPases associated with a variety of cellular activities BAMEG_2383 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_2383 SM00387 Histidine kinase-like ATPases BAMEG_2383 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_2384 SM00448 cheY-homologous receiver domain BAMEG_2384 SM00862 Transcriptional regulatory protein, C terminal BAMEG_2395 SM00857 Resolvase, N terminal domain BAMEG_2403 SM00028 Tetratricopeptide repeats BAMEG_2406 SM00382 ATPases associated with a variety of cellular activities BAMEG_2409 SM00327 von Willebrand factor (vWF) type A domain BAMEG_2415 SM00028 Tetratricopeptide repeats BAMEG_2416 SM00028 Tetratricopeptide repeats BAMEG_2420 SM00836 DALR anticodon binding domain BAMEG_2420 SM01016 Arginyl tRNA synthetase N terminal dom BAMEG_2424 SM00567 E-Z type HEAT repeats BAMEG_2424 SM00932 Scaffold protein Nfu/NifU N terminal BAMEG_2431 SM00382 ATPases associated with a variety of cellular activities BAMEG_2432 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_2443 SM00894 Excalibur calcium-binding domain BAMEG_2456 SM00852 Probable molybdopterin binding domain BAMEG_2458 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_2459 SM00100 Cyclic nucleotide-monophosphate binding domain BAMEG_2459 SM00419 helix_turn_helix, cAMP Regulatory protein BAMEG_2461 SM00382 ATPases associated with a variety of cellular activities BAMEG_2462 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_2466 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMEG_2471 SM00460 Transglutaminase/protease-like homologues BAMEG_2474 SM00849 Metallo-beta-lactamase superfamily BAMEG_2478 SM00829 Enoylreductase BAMEG_2482 SM00487 DEAD-like helicases superfamily BAMEG_2482 SM00490 helicase superfamily c-terminal domain BAMEG_2506 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_2512 SM01005 Alanine racemase, C-terminal domain BAMEG_2515 SM00855 Phosphoglycerate mutase family BAMEG_2516 SM00244 prohibitin homologues BAMEG_2530 SM01091 Transporter associated domain BAMEG_2536 SM00155 Phospholipase D. Active site motifs. BAMEG_2546 SM00855 Phosphoglycerate mutase family BAMEG_2565 SM00833 Cobalamin synthesis protein cobW C-terminal domain BAMEG_2577 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_2577 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_2584 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_2586 SM00966 SpoVT / AbrB like domain BAMEG_2593 SM00460 Transglutaminase/protease-like homologues BAMEG_2615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_2615 SM00387 Histidine kinase-like ATPases BAMEG_2615 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_2616 SM00448 cheY-homologous receiver domain BAMEG_2616 SM00862 Transcriptional regulatory protein, C terminal BAMEG_2634 SM00387 Histidine kinase-like ATPases BAMEG_2634 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_2635 SM00448 cheY-homologous receiver domain BAMEG_2635 SM00862 Transcriptional regulatory protein, C terminal BAMEG_2636 SM00382 ATPases associated with a variety of cellular activities BAMEG_2639 SM00287 Bacterial SH3 domain homologues BAMEG_2645 SM00382 ATPases associated with a variety of cellular activities BAMEG_2646 SM00382 ATPases associated with a variety of cellular activities BAMEG_2650 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_2657 SM00382 ATPases associated with a variety of cellular activities BAMEG_2658 SM00382 ATPases associated with a variety of cellular activities BAMEG_2665 SM00833 Cobalamin synthesis protein cobW C-terminal domain BAMEG_2686 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAMEG_2686 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAMEG_2686 SM00493 BAMEG_2686 BAMEG_2688 SM00287 Bacterial SH3 domain homologues BAMEG_2691 SM01011 Aminopeptidase P, N-terminal domain BAMEG_2698 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BAMEG_2700 SM01133 BAMEG_2700 BAMEG_2712 SM00450 Rhodanese Homology Domain BAMEG_2715 SM00387 Histidine kinase-like ATPases BAMEG_2715 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_2716 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_2717 SM00448 cheY-homologous receiver domain BAMEG_2717 SM00862 Transcriptional regulatory protein, C terminal BAMEG_2719 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_2731 SM00850 LytTr DNA-binding domain BAMEG_2737 SM00854 Bacterial capsule synthesis protein PGA_cap BAMEG_2773 SM00047 Lysozyme subfamily 2 BAMEG_2774 SM00646 BAMEG_2774 BAMEG_2787 SM00487 DEAD-like helicases superfamily BAMEG_2787 SM00490 helicase superfamily c-terminal domain BAMEG_2789 SM00448 cheY-homologous receiver domain BAMEG_2790 SM00387 Histidine kinase-like ATPases BAMEG_2791 SM00919 Malic enzyme, NAD binding domain BAMEG_2791 SM01274 BAMEG_2791 BAMEG_2795 SM00155 Phospholipase D. Active site motifs. BAMEG_2798 SM00382 ATPases associated with a variety of cellular activities BAMEG_2800 SM00421 helix_turn_helix, Lux Regulon BAMEG_2800 SM00448 cheY-homologous receiver domain BAMEG_2809 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_2828 SM00833 Cobalamin synthesis protein cobW C-terminal domain BAMEG_2830 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_2830 SM00895 BAMEG_2830 BAMEG_2843 SM00855 Phosphoglycerate mutase family BAMEG_2846 SM00835 Cupin BAMEG_2850 SM00849 Metallo-beta-lactamase superfamily BAMEG_2850 SM01027 Beta-Casp domain BAMEG_2853 SM00382 ATPases associated with a variety of cellular activities BAMEG_2857 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_2867 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMEG_2869 SM00382 ATPases associated with a variety of cellular activities BAMEG_2869 SM00962 SRP54-type protein, GTPase domain BAMEG_2885 SM00028 Tetratricopeptide repeats BAMEG_2888 SM00028 Tetratricopeptide repeats BAMEG_2895 SM00260 Two component signalling adaptor domain BAMEG_2895 SM00448 cheY-homologous receiver domain BAMEG_2905 SM00382 ATPases associated with a variety of cellular activities BAMEG_2923 SM00138 Methyltransferase, chemotaxis proteins BAMEG_2927 SM00260 Two component signalling adaptor domain BAMEG_2927 SM00387 Histidine kinase-like ATPases BAMEG_2927 SM01231 BAMEG_2927 BAMEG_2928 SM00073 Histidine Phosphotransfer domain BAMEG_2929 SM00448 cheY-homologous receiver domain BAMEG_2949 SM00422 helix_turn_helix, mercury resistance BAMEG_2949 SM00871 Bacterial transcription activator, effector binding domain BAMEG_2951 SM00849 Metallo-beta-lactamase superfamily BAMEG_2961 SM00357 Cold shock protein domain BAMEG_2985 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BAMEG_2985 SM00475 5'-3' exonuclease BAMEG_2994 SM00450 Rhodanese Homology Domain BAMEG_3009 SM00491 BAMEG_3009 BAMEG_3011 SM00981 BAMEG_3011 BAMEG_3023 SM00060 Fibronectin type 3 domain BAMEG_3025 SM00478 endonuclease III BAMEG_3025 SM00525 BAMEG_3025 BAMEG_3030 SM00479 BAMEG_3030 BAMEG_3030 SM00487 DEAD-like helicases superfamily BAMEG_3030 SM00491 BAMEG_3030 BAMEG_3039 SM00851 MGS-like domain BAMEG_3043 SM00986 Uracil DNA glycosylase superfamily BAMEG_3043 SM00987 UreE urease accessory protein, C-terminal domain BAMEG_3052 SM00914 BAMEG_3052 BAMEG_3053 SM00028 Tetratricopeptide repeats BAMEG_3057 SM00562 BAMEG_3057 BAMEG_3062 SM00411 bacterial (prokaryotic) histone like domain BAMEG_3073 SM01240 BAMEG_3073 BAMEG_3074 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_3076 SM00870 BAMEG_3076 BAMEG_3078 SM00644 BAMEG_3078 BAMEG_3081 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BAMEG_3083 SM00422 helix_turn_helix, mercury resistance BAMEG_3086 SM00257 Lysin motif BAMEG_3088 SM00487 DEAD-like helicases superfamily BAMEG_3088 SM00490 helicase superfamily c-terminal domain BAMEG_3094 SM00257 Lysin motif BAMEG_3096 SM00091 PAS domain BAMEG_3096 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_3096 SM00387 Histidine kinase-like ATPases BAMEG_3096 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3097 SM00448 cheY-homologous receiver domain BAMEG_3097 SM00862 Transcriptional regulatory protein, C terminal BAMEG_3101 SM00363 S4 RNA-binding domain BAMEG_3112 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_3112 SM00387 Histidine kinase-like ATPases BAMEG_3112 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3116 SM00091 PAS domain BAMEG_3116 SM00387 Histidine kinase-like ATPases BAMEG_3116 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3134 SM00421 helix_turn_helix, Lux Regulon BAMEG_3134 SM00448 cheY-homologous receiver domain BAMEG_3135 SM00387 Histidine kinase-like ATPases BAMEG_3174 SM01329 BAMEG_3174 BAMEG_3175 SM00917 LeuA allosteric (dimerisation) domain BAMEG_3189 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3213 SM00344 helix_turn_helix ASNC type BAMEG_3217 SM00382 ATPases associated with a variety of cellular activities BAMEG_3219 SM00382 ATPases associated with a variety of cellular activities BAMEG_3220 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_3223 SM00465 GIY-YIG type nucleases (URI domain) BAMEG_3223 SM00496 Intron-encoded nuclease repeat 2 BAMEG_3238 SM00387 Histidine kinase-like ATPases BAMEG_3238 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3242 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3243 SM00387 Histidine kinase-like ATPases BAMEG_3243 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3249 SM00365 Leucine-rich repeat, SDS22-like subfamily BAMEG_3249 SM00369 Leucine-rich repeats, typical (most populated) subfamily BAMEG_3253 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMEG_3253 SM01134 BAMEG_3253 BAMEG_3266 SM00822 BAMEG_3266 BAMEG_3283 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_3283 SM00895 BAMEG_3283 BAMEG_3284 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_3284 SM00387 Histidine kinase-like ATPases BAMEG_3284 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3285 SM00448 cheY-homologous receiver domain BAMEG_3285 SM00862 Transcriptional regulatory protein, C terminal BAMEG_3295 SM00014 Acid phosphatase homologues BAMEG_3299 SM00382 ATPases associated with a variety of cellular activities BAMEG_3304 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_3321 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_3322 SM00861 Transketolase, pyrimidine binding domain BAMEG_3345 SM00635 Bacterial Ig-like domain 2 BAMEG_3377 SM00954 Region found in RelA / SpoT proteins BAMEG_3379 SM01118 BAMEG_3379 BAMEG_3385 SM00155 Phospholipase D. Active site motifs. BAMEG_3393 SM00382 ATPases associated with a variety of cellular activities BAMEG_3394 SM00382 ATPases associated with a variety of cellular activities BAMEG_3402 SM00825 Beta-ketoacyl synthase BAMEG_3408 SM00382 ATPases associated with a variety of cellular activities BAMEG_3408 SM01086 C-terminal, D2-small domain, of ClpB protein BAMEG_3418 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_3420 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_3421 SM00642 Alpha-amylase domain BAMEG_3423 SM01060 BAMEG_3423 BAMEG_3446 SM00357 Cold shock protein domain BAMEG_3455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_3455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_3461 SM00448 cheY-homologous receiver domain BAMEG_3461 SM00862 Transcriptional regulatory protein, C terminal BAMEG_3462 SM00387 Histidine kinase-like ATPases BAMEG_3462 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3465 SM00342 helix_turn_helix, arabinose operon control protein BAMEG_3465 SM00871 Bacterial transcription activator, effector binding domain BAMEG_3468 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_3483 SM00725 NEAr Transporter domain BAMEG_3488 SM00849 Metallo-beta-lactamase superfamily BAMEG_3490 SM00354 helix_turn _helix lactose operon repressor BAMEG_3511 SM00422 helix_turn_helix, mercury resistance BAMEG_3525 SM00382 ATPases associated with a variety of cellular activities BAMEG_3528 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3537 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3548 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_3553 SM00028 Tetratricopeptide repeats BAMEG_3558 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_3567 SM00829 Enoylreductase BAMEG_3575 SM00387 Histidine kinase-like ATPases BAMEG_3575 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3575 SM00448 cheY-homologous receiver domain BAMEG_3576 SM00138 Methyltransferase, chemotaxis proteins BAMEG_3577 SM00331 Sigma factor PP2C-like phosphatases BAMEG_3577 SM00448 cheY-homologous receiver domain BAMEG_3590 SM00460 Transglutaminase/protease-like homologues BAMEG_3594 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_3604 SM01120 BAMEG_3604 BAMEG_3611 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3634 SM00422 helix_turn_helix, mercury resistance BAMEG_3641 SM00448 cheY-homologous receiver domain BAMEG_3642 SM00091 PAS domain BAMEG_3642 SM00387 Histidine kinase-like ATPases BAMEG_3644 SM00860 SMI1 / KNR4 family BAMEG_3645 SM00860 SMI1 / KNR4 family BAMEG_3649 SM00382 ATPases associated with a variety of cellular activities BAMEG_3664 SM00646 BAMEG_3664 BAMEG_3675 SM00635 Bacterial Ig-like domain 2 BAMEG_3678 SM00957 SecA DEAD-like domain BAMEG_3678 SM00958 SecA preprotein cross-linking domain BAMEG_3685 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_3687 SM00644 BAMEG_3687 BAMEG_3702 SM00382 ATPases associated with a variety of cellular activities BAMEG_3704 SM00062 Bacterial periplasmic substrate-binding proteins BAMEG_3704 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAMEG_3705 SM00382 ATPases associated with a variety of cellular activities BAMEG_3707 SM00382 ATPases associated with a variety of cellular activities BAMEG_3714 SM01060 BAMEG_3714 BAMEG_3727 SM00344 helix_turn_helix ASNC type BAMEG_3748 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BAMEG_3760 SM00382 ATPases associated with a variety of cellular activities BAMEG_3762 SM00287 Bacterial SH3 domain homologues BAMEG_3773 SM00829 Enoylreductase BAMEG_3779 SM00450 Rhodanese Homology Domain BAMEG_3781 SM00450 Rhodanese Homology Domain BAMEG_3781 SM00849 Metallo-beta-lactamase superfamily BAMEG_3782 SM00450 Rhodanese Homology Domain BAMEG_3784 SM00450 Rhodanese Homology Domain BAMEG_3787 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3803 SM00354 helix_turn _helix lactose operon repressor BAMEG_3805 SM00640 Glycosyl hydrolases family 32 BAMEG_3814 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3833 SM00382 ATPases associated with a variety of cellular activities BAMEG_3837 SM00287 Bacterial SH3 domain homologues BAMEG_3841 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMEG_3872 SM00899 BAMEG_3872 BAMEG_3891 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_3900 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_3902 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_3909 SM00770 Zinc dependent phospholipase C (alpha toxin) BAMEG_3911 SM00829 Enoylreductase BAMEG_3919 SM00382 ATPases associated with a variety of cellular activities BAMEG_3922 SM00354 helix_turn _helix lactose operon repressor BAMEG_3925 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_3927 SM00382 ATPases associated with a variety of cellular activities BAMEG_3928 SM00382 ATPases associated with a variety of cellular activities BAMEG_3936 SM00448 cheY-homologous receiver domain BAMEG_3936 SM00862 Transcriptional regulatory protein, C terminal BAMEG_3937 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_3937 SM00387 Histidine kinase-like ATPases BAMEG_3937 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_3947 SM00062 Bacterial periplasmic substrate-binding proteins BAMEG_3947 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAMEG_3948 SM00382 ATPases associated with a variety of cellular activities BAMEG_3955 SM00642 Alpha-amylase domain BAMEG_3957 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_3957 SM00866 BAMEG_3957 BAMEG_3959 SM00052 Putative diguanylate phosphodiesterase BAMEG_3959 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BAMEG_3959 SM00091 PAS domain BAMEG_3959 SM00267 diguanylate cyclase BAMEG_3962 SM00155 Phospholipase D. Active site motifs. BAMEG_3963 SM00382 ATPases associated with a variety of cellular activities BAMEG_3964 SM00327 von Willebrand factor (vWF) type A domain BAMEG_3969 SM00382 ATPases associated with a variety of cellular activities BAMEG_3975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_3988 SM00028 Tetratricopeptide repeats BAMEG_3988 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_3991 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_3993 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BAMEG_3993 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BAMEG_3997 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BAMEG_3997 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BAMEG_4001 SM00448 cheY-homologous receiver domain BAMEG_4001 SM00862 Transcriptional regulatory protein, C terminal BAMEG_4002 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_4002 SM00387 Histidine kinase-like ATPases BAMEG_4002 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_4004 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_4007 SM00919 Malic enzyme, NAD binding domain BAMEG_4007 SM01274 BAMEG_4007 BAMEG_4009 SM00448 cheY-homologous receiver domain BAMEG_4010 SM00387 Histidine kinase-like ATPases BAMEG_4011 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_4011 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_4014 SM00387 Histidine kinase-like ATPases BAMEG_4014 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_4015 SM00448 cheY-homologous receiver domain BAMEG_4015 SM00862 Transcriptional regulatory protein, C terminal BAMEG_4020 SM00382 ATPases associated with a variety of cellular activities BAMEG_4022 SM00248 ankyrin repeats BAMEG_4026 SM00448 cheY-homologous receiver domain BAMEG_4027 SM00091 PAS domain BAMEG_4027 SM00387 Histidine kinase-like ATPases BAMEG_4028 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_4028 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_4029 SM00244 prohibitin homologues BAMEG_4031 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BAMEG_4034 SM00364 Leucine-rich repeats, bacterial type BAMEG_4034 SM00365 Leucine-rich repeat, SDS22-like subfamily BAMEG_4034 SM00369 Leucine-rich repeats, typical (most populated) subfamily BAMEG_4034 SM00725 NEAr Transporter domain BAMEG_4036 SM00763 PrkA AAA domain BAMEG_4037 SM00052 Putative diguanylate phosphodiesterase BAMEG_4037 SM00091 PAS domain BAMEG_4037 SM00267 diguanylate cyclase BAMEG_4040 SM00567 E-Z type HEAT repeats BAMEG_4073 SM00382 ATPases associated with a variety of cellular activities BAMEG_4077 SM00382 ATPases associated with a variety of cellular activities BAMEG_4084 SM00478 endonuclease III BAMEG_4084 SM00525 BAMEG_4084 BAMEG_4100 SM00984 UDP binding domain BAMEG_4113 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_4117 SM00382 ATPases associated with a variety of cellular activities BAMEG_4162 SM00382 ATPases associated with a variety of cellular activities BAMEG_4167 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_4168 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_4177 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMEG_4187 SM00855 Phosphoglycerate mutase family BAMEG_4200 SM00878 Biotin carboxylase C-terminal domain BAMEG_4204 SM00670 Large family of predicted nucleotide-binding domains BAMEG_4209 SM00838 Elongation factor G C-terminus BAMEG_4224 SM00861 Transketolase, pyrimidine binding domain BAMEG_4230 SM00849 Metallo-beta-lactamase superfamily BAMEG_4244 SM00052 Putative diguanylate phosphodiesterase BAMEG_4253 SM00267 diguanylate cyclase BAMEG_4263 SM00387 Histidine kinase-like ATPases BAMEG_4263 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_4266 SM00354 helix_turn _helix lactose operon repressor BAMEG_4271 SM00642 Alpha-amylase domain BAMEG_4272 SM00642 Alpha-amylase domain BAMEG_4273 SM00382 ATPases associated with a variety of cellular activities BAMEG_4279 SM00382 ATPases associated with a variety of cellular activities BAMEG_4298 SM01007 Class II Aldolase and Adducin N-terminal domain BAMEG_4304 SM00267 diguanylate cyclase BAMEG_4311 SM01061 CAT RNA binding domain BAMEG_4313 SM00866 BAMEG_4313 BAMEG_4316 SM00849 Metallo-beta-lactamase superfamily BAMEG_4335 SM00387 Histidine kinase-like ATPases BAMEG_4337 SM00936 Penicillin-binding protein 5, C-terminal domain BAMEG_4338 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_4339 SM00382 ATPases associated with a variety of cellular activities BAMEG_4342 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_4346 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BAMEG_4365 SM00354 helix_turn _helix lactose operon repressor BAMEG_4369 SM00704 CDGSH-type zinc finger. Function unknown. BAMEG_4376 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_4376 SM00876 Biotin and Thiamin Synthesis associated domain BAMEG_4387 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_4394 SM00859 Semialdehyde dehydrogenase, NAD binding domain BAMEG_4403 SM00849 Metallo-beta-lactamase superfamily BAMEG_4411 SM00382 ATPases associated with a variety of cellular activities BAMEG_4413 SM00062 Bacterial periplasmic substrate-binding proteins BAMEG_4413 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BAMEG_4420 SM00861 Transketolase, pyrimidine binding domain BAMEG_4424 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BAMEG_4426 SM00091 PAS domain BAMEG_4426 SM00382 ATPases associated with a variety of cellular activities BAMEG_4431 SM00448 cheY-homologous receiver domain BAMEG_4432 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMEG_4435 SM00363 S4 RNA-binding domain BAMEG_4436 SM00861 Transketolase, pyrimidine binding domain BAMEG_4443 SM00878 Biotin carboxylase C-terminal domain BAMEG_4452 SM00382 ATPases associated with a variety of cellular activities BAMEG_4455 SM00841 Elongation factor P, C-terminal BAMEG_4455 SM01185 BAMEG_4455 BAMEG_4462 SM00529 Helix-turn-helix diphteria tox regulatory element BAMEG_4467 SM00450 Rhodanese Homology Domain BAMEG_4468 SM00354 helix_turn _helix lactose operon repressor BAMEG_4478 SM00382 ATPases associated with a variety of cellular activities BAMEG_4479 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_4485 SM00487 DEAD-like helicases superfamily BAMEG_4485 SM00490 helicase superfamily c-terminal domain BAMEG_4493 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BAMEG_4501 SM00382 ATPases associated with a variety of cellular activities BAMEG_4512 SM01018 B12 binding domain BAMEG_4519 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_4521 SM00849 Metallo-beta-lactamase superfamily BAMEG_4530 SM00382 ATPases associated with a variety of cellular activities BAMEG_4543 SM00382 ATPases associated with a variety of cellular activities BAMEG_4546 SM00518 AP endonuclease family 2 BAMEG_4547 SM00487 DEAD-like helicases superfamily BAMEG_4547 SM00490 helicase superfamily c-terminal domain BAMEG_4555 SM00400 zinc finger BAMEG_4555 SM00493 BAMEG_4555 BAMEG_4555 SM00766 DNA primase DnaG DnaB-binding BAMEG_4559 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMEG_4566 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_4572 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_4575 SM00271 DnaJ molecular chaperone homology domain BAMEG_4579 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_4581 SM00838 Elongation factor G C-terminus BAMEG_4587 SM00849 Metallo-beta-lactamase superfamily BAMEG_4590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMEG_4594 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_4596 SM01103 BAMEG_4596 BAMEG_4609 SM00954 Region found in RelA / SpoT proteins BAMEG_4611 SM00098 Alkaline phosphatase homologues BAMEG_4617 SM00855 Phosphoglycerate mutase family BAMEG_4627 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_4632 SM00382 ATPases associated with a variety of cellular activities BAMEG_4651 SM00732 Likely ribonuclease with RNase H fold. BAMEG_4653 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMEG_4660 SM00028 Tetratricopeptide repeats BAMEG_4664 SM00382 ATPases associated with a variety of cellular activities BAMEG_4671 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_4671 SM00954 Region found in RelA / SpoT proteins BAMEG_4680 SM01323 BAMEG_4680 BAMEG_4684 SM00382 ATPases associated with a variety of cellular activities BAMEG_4685 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMEG_4690 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_4693 SM00257 Lysin motif BAMEG_4703 SM00382 ATPases associated with a variety of cellular activities BAMEG_4704 SM00387 Histidine kinase-like ATPases BAMEG_4706 SM00448 cheY-homologous receiver domain BAMEG_4706 SM00862 Transcriptional regulatory protein, C terminal BAMEG_4708 SM01317 BAMEG_4708 BAMEG_4727 SM00257 Lysin motif BAMEG_4729 SM01004 Delta-aminolevulinic acid dehydratase BAMEG_4734 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_4737 SM00382 ATPases associated with a variety of cellular activities BAMEG_4738 SM00464 Found in ATP-dependent protease La (LON) BAMEG_4739 SM00382 ATPases associated with a variety of cellular activities BAMEG_4740 SM00382 ATPases associated with a variety of cellular activities BAMEG_4740 SM00994 ClpX C4-type zinc finger BAMEG_4740 SM01086 C-terminal, D2-small domain, of ClpB protein BAMEG_4752 SM00909 Sporulation and spore germination BAMEG_4760 SM00421 helix_turn_helix, Lux Regulon BAMEG_4768 SM00382 ATPases associated with a variety of cellular activities BAMEG_4769 SM00382 ATPases associated with a variety of cellular activities BAMEG_4771 SM00342 helix_turn_helix, arabinose operon control protein BAMEG_4771 SM00448 cheY-homologous receiver domain BAMEG_4775 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_4780 SM00382 ATPases associated with a variety of cellular activities BAMEG_4791 SM00465 GIY-YIG type nucleases (URI domain) BAMEG_4793 SM00893 Electron transfer flavoprotein domain BAMEG_4794 SM00893 Electron transfer flavoprotein domain BAMEG_4807 SM00382 ATPases associated with a variety of cellular activities BAMEG_4808 SM00387 Histidine kinase-like ATPases BAMEG_4808 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_4809 SM00448 cheY-homologous receiver domain BAMEG_4809 SM00862 Transcriptional regulatory protein, C terminal BAMEG_4812 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BAMEG_4816 SM00382 ATPases associated with a variety of cellular activities BAMEG_4819 SM00725 NEAr Transporter domain BAMEG_4820 SM00725 NEAr Transporter domain BAMEG_4821 SM00725 NEAr Transporter domain BAMEG_4823 SM00363 S4 RNA-binding domain BAMEG_4824 SM00463 Small MutS-related domain BAMEG_4824 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BAMEG_4824 SM00534 ATPase domain of DNA mismatch repair MUTS family BAMEG_4825 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BAMEG_4825 SM00481 DNA polymerase alpha chain like domain BAMEG_4825 SM00483 DNA polymerase X family BAMEG_4833 SM00873 B3/4 domain BAMEG_4833 SM00874 tRNA synthetase B5 domain BAMEG_4833 SM00896 Ferredoxin-fold anticodon binding domain BAMEG_4835 SM00967 RNA 2'-O ribose methyltransferase substrate binding BAMEG_4851 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BAMEG_4853 SM00382 ATPases associated with a variety of cellular activities BAMEG_4858 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BAMEG_4861 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BAMEG_4861 SM01232 BAMEG_4861 BAMEG_4862 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BAMEG_4862 SM00474 3'-5' exonuclease BAMEG_4862 SM00475 5'-3' exonuclease BAMEG_4862 SM00482 DNA polymerase A domain BAMEG_4863 SM00091 PAS domain BAMEG_4863 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_4863 SM00387 Histidine kinase-like ATPases BAMEG_4863 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_4864 SM00448 cheY-homologous receiver domain BAMEG_4864 SM00862 Transcriptional regulatory protein, C terminal BAMEG_4869 SM01329 BAMEG_4869 BAMEG_4878 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_4879 SM00919 Malic enzyme, NAD binding domain BAMEG_4879 SM01274 BAMEG_4879 BAMEG_4880 SM00481 DNA polymerase alpha chain like domain BAMEG_4889 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMEG_4892 SM00849 Metallo-beta-lactamase superfamily BAMEG_4903 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_4905 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BAMEG_4905 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BAMEG_4930 SM00981 BAMEG_4930 BAMEG_4940 SM00363 S4 RNA-binding domain BAMEG_4940 SM01390 BAMEG_4940 BAMEG_4943 SM00363 S4 RNA-binding domain BAMEG_4949 SM00116 Domain in cystathionine beta-synthase and other proteins. BAMEG_4952 SM00448 cheY-homologous receiver domain BAMEG_4952 SM00862 Transcriptional regulatory protein, C terminal BAMEG_4953 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_4953 SM00387 Histidine kinase-like ATPases BAMEG_4953 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_4954 SM00248 ankyrin repeats BAMEG_4961 SM00354 helix_turn _helix lactose operon repressor BAMEG_4971 SM00843 BAMEG_4971 BAMEG_4979 SM00849 Metallo-beta-lactamase superfamily BAMEG_4983 SM00642 Alpha-amylase domain BAMEG_4987 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMEG_4988 SM00363 S4 RNA-binding domain BAMEG_4993 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_4998 SM01058 CarD-like/TRCF domain BAMEG_5005 SM00852 Probable molybdopterin binding domain BAMEG_5009 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_5013 SM00450 Rhodanese Homology Domain BAMEG_5031 SM00382 ATPases associated with a variety of cellular activities BAMEG_5035 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_5037 SM00382 ATPases associated with a variety of cellular activities BAMEG_5046 SM00014 Acid phosphatase homologues BAMEG_5049 SM00852 Probable molybdopterin binding domain BAMEG_5063 SM00387 Histidine kinase-like ATPases BAMEG_5064 SM00387 Histidine kinase-like ATPases BAMEG_5064 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_5071 SM00382 ATPases associated with a variety of cellular activities BAMEG_5082 SM00947 Carbonic anhydrase BAMEG_5083 SM01234 BAMEG_5083 BAMEG_5088 SM00894 Excalibur calcium-binding domain BAMEG_5099 SM00899 BAMEG_5099 BAMEG_5102 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_5102 SM00387 Histidine kinase-like ATPases BAMEG_5102 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_5103 SM00448 cheY-homologous receiver domain BAMEG_5103 SM00862 Transcriptional regulatory protein, C terminal BAMEG_5109 SM00046 Diacylglycerol kinase catalytic domain (presumed) BAMEG_5119 SM00382 ATPases associated with a variety of cellular activities BAMEG_5120 SM00871 Bacterial transcription activator, effector binding domain BAMEG_5121 SM00448 cheY-homologous receiver domain BAMEG_5121 SM00862 Transcriptional regulatory protein, C terminal BAMEG_5122 SM00387 Histidine kinase-like ATPases BAMEG_5126 SM00382 ATPases associated with a variety of cellular activities BAMEG_5131 SM00345 helix_turn_helix gluconate operon transcriptional repressor BAMEG_5131 SM00866 BAMEG_5131 BAMEG_5139 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_5139 SM00387 Histidine kinase-like ATPases BAMEG_5139 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_5140 SM00448 cheY-homologous receiver domain BAMEG_5140 SM00862 Transcriptional regulatory protein, C terminal BAMEG_5141 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BAMEG_5149 SM00357 Cold shock protein domain BAMEG_5156 SM00642 Alpha-amylase domain BAMEG_5189 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_5191 SM00344 helix_turn_helix ASNC type BAMEG_5198 SM01298 BAMEG_5198 BAMEG_5199 SM00479 BAMEG_5199 BAMEG_5220 SM00871 Bacterial transcription activator, effector binding domain BAMEG_5232 SM00382 ATPases associated with a variety of cellular activities BAMEG_5237 SM00860 SMI1 / KNR4 family BAMEG_5250 SM00420 helix_turn_helix, Deoxyribose operon repressor BAMEG_5257 SM00422 helix_turn_helix, mercury resistance BAMEG_5260 SM00855 Phosphoglycerate mutase family BAMEG_5262 SM00729 Elongator protein 3, MiaB family, Radical SAM BAMEG_5274 SM00382 ATPases associated with a variety of cellular activities BAMEG_5278 SM00382 ATPases associated with a variety of cellular activities BAMEG_5278 SM00930 BAMEG_5278 BAMEG_5283 SM00493 BAMEG_5283 BAMEG_5299 SM00849 Metallo-beta-lactamase superfamily BAMEG_5309 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_5309 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_5323 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_5328 SM00448 cheY-homologous receiver domain BAMEG_5328 SM00862 Transcriptional regulatory protein, C terminal BAMEG_5329 SM00387 Histidine kinase-like ATPases BAMEG_5329 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_5333 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_5333 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_5337 SM00347 helix_turn_helix multiple antibiotic resistance protein BAMEG_5358 SM01276 BAMEG_5358 BAMEG_5365 SM00363 S4 RNA-binding domain BAMEG_5367 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BAMEG_5368 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_5379 SM00382 ATPases associated with a variety of cellular activities BAMEG_5383 SM00448 cheY-homologous receiver domain BAMEG_5383 SM00862 Transcriptional regulatory protein, C terminal BAMEG_5388 SM00316 Ribosomal protein S1-like RNA-binding domain BAMEG_5388 SM00357 Cold shock protein domain BAMEG_5388 SM00955 BAMEG_5388 BAMEG_5410 SM00507 HNH nucleases BAMEG_5417 SM01192 BAMEG_5417 BAMEG_5417 SM01193 BAMEG_5417 BAMEG_5421 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BAMEG_5441 SM00028 Tetratricopeptide repeats BAMEG_5449 SM00487 DEAD-like helicases superfamily BAMEG_5449 SM00490 helicase superfamily c-terminal domain BAMEG_5453 SM00422 helix_turn_helix, mercury resistance BAMEG_5457 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_5460 SM00422 helix_turn_helix, mercury resistance BAMEG_5462 SM00382 ATPases associated with a variety of cellular activities BAMEG_5464 SM00382 ATPases associated with a variety of cellular activities BAMEG_5466 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMEG_5466 SM00245 tail specific protease BAMEG_5468 SM00382 ATPases associated with a variety of cellular activities BAMEG_5472 SM00957 SecA DEAD-like domain BAMEG_5472 SM00958 SecA preprotein cross-linking domain BAMEG_5475 SM00357 Cold shock protein domain BAMEG_5477 SM00487 DEAD-like helicases superfamily BAMEG_5477 SM00490 helicase superfamily c-terminal domain BAMEG_5484 SM00984 UDP binding domain BAMEG_5487 SM00382 ATPases associated with a variety of cellular activities BAMEG_5488 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BAMEG_5527 SM00287 Bacterial SH3 domain homologues BAMEG_5533 SM00487 DEAD-like helicases superfamily BAMEG_5533 SM00490 helicase superfamily c-terminal domain BAMEG_5542 SM00382 ATPases associated with a variety of cellular activities BAMEG_5544 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_5549 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_5549 SM00387 Histidine kinase-like ATPases BAMEG_5549 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_5550 SM00448 cheY-homologous receiver domain BAMEG_5550 SM00862 Transcriptional regulatory protein, C terminal BAMEG_5556 SM00287 Bacterial SH3 domain homologues BAMEG_5556 SM00382 ATPases associated with a variety of cellular activities BAMEG_5558 SM00984 UDP binding domain BAMEG_5572 SM00382 ATPases associated with a variety of cellular activities BAMEG_5573 SM00850 LytTr DNA-binding domain BAMEG_5590 SM00052 Putative diguanylate phosphodiesterase BAMEG_5590 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BAMEG_5590 SM00091 PAS domain BAMEG_5590 SM00267 diguanylate cyclase BAMEG_5594 SM00382 ATPases associated with a variety of cellular activities BAMEG_5608 SM00226 Low molecular weight phosphatase family BAMEG_5611 SM00903 Flavin reductase like domain BAMEG_5618 SM00937 BAMEG_5618 BAMEG_5621 SM00357 Cold shock protein domain BAMEG_5621 SM00382 ATPases associated with a variety of cellular activities BAMEG_5621 SM00959 Rho termination factor, N-terminal domain BAMEG_5625 SM00448 cheY-homologous receiver domain BAMEG_5635 SM00155 Phospholipase D. Active site motifs. BAMEG_5637 SM00052 Putative diguanylate phosphodiesterase BAMEG_5637 SM00267 diguanylate cyclase BAMEG_5640 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_5641 SM00421 helix_turn_helix, Lux Regulon BAMEG_5641 SM00448 cheY-homologous receiver domain BAMEG_5642 SM00387 Histidine kinase-like ATPases BAMEG_5644 SM00382 ATPases associated with a variety of cellular activities BAMEG_5655 SM00836 DALR anticodon binding domain BAMEG_5655 SM01016 Arginyl tRNA synthetase N terminal dom BAMEG_5664 SM00422 helix_turn_helix, mercury resistance BAMEG_5671 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BAMEG_5673 SM00382 ATPases associated with a variety of cellular activities BAMEG_5683 SM00936 Penicillin-binding protein 5, C-terminal domain BAMEG_5692 SM00986 Uracil DNA glycosylase superfamily BAMEG_5692 SM00987 UreE urease accessory protein, C-terminal domain BAMEG_5694 SM00382 ATPases associated with a variety of cellular activities BAMEG_5696 SM00354 helix_turn _helix lactose operon repressor BAMEG_5704 SM00100 Cyclic nucleotide-monophosphate binding domain BAMEG_5706 SM00421 helix_turn_helix, Lux Regulon BAMEG_5706 SM00448 cheY-homologous receiver domain BAMEG_5708 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BAMEG_5710 SM00267 diguanylate cyclase BAMEG_5713 SM00448 cheY-homologous receiver domain BAMEG_5713 SM00850 LytTr DNA-binding domain BAMEG_5720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BAMEG_5725 SM00382 ATPases associated with a variety of cellular activities BAMEG_5738 SM00448 cheY-homologous receiver domain BAMEG_5738 SM00850 LytTr DNA-binding domain BAMEG_5739 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BAMEG_5739 SM00387 Histidine kinase-like ATPases BAMEG_5751 SM00487 DEAD-like helicases superfamily BAMEG_5751 SM00490 helicase superfamily c-terminal domain BAMEG_5753 SM01240 BAMEG_5753 BAMEG_5758 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BAMEG_5759 SM00849 Metallo-beta-lactamase superfamily BAMEG_5762 SM00091 PAS domain BAMEG_5762 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BAMEG_5762 SM00387 Histidine kinase-like ATPases BAMEG_5762 SM00388 His Kinase A (phosphoacceptor) domain BAMEG_5763 SM00448 cheY-homologous receiver domain BAMEG_5763 SM00862 Transcriptional regulatory protein, C terminal BAMEG_5768 SM00788 Adenylosuccinate synthetase BAMEG_5771 SM00267 diguanylate cyclase BAMEG_5780 SM00470 ParB-like nuclease domain BAMEG_5782 SM00470 ParB-like nuclease domain BAMEG_5784 SM01228 BAMEG_5784 BAMEG_5786 SM00393 Putative single-stranded nucleic acids-binding domain BAMEG_5786 SM01245 BAMEG_5786 BAMEG_A0013 SM00507 HNH nucleases BAMEG_A0014 SM00487 DEAD-like helicases superfamily BAMEG_A0032 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain BAMEG_A0060 SM00530 Helix-turn-helix XRE-family like proteins BAMEG_A0062 SM00843 BAMEG_A0062 BAMEG_A0065 SM00864 Tubulin/FtsZ family, GTPase domain BAMEG_A0112 SM00725 NEAr Transporter domain BAMEG_A0117 SM00014 Acid phosphatase homologues BAMEG_A0123 SM00984 UDP binding domain BAMEG_A0151 SM00857 Resolvase, N terminal domain BAMEG_A0160 SM00758 BAMEG_A0160 BAMEG_A0161 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_A0183 SM00860 SMI1 / KNR4 family BAMEG_A0191 SM00954 Region found in RelA / SpoT proteins BAMEG_A0197 SM00028 Tetratricopeptide repeats BAMEG_A0200 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_A0204 SM00318 Staphylococcal nuclease homologues BAMEG_A0206 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAMEG_A0206 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAMEG_A0206 SM00493 BAMEG_A0206 BAMEG_B0048 SM00646 BAMEG_B0048 BAMEG_B0060 SM00014 Acid phosphatase homologues BAMEG_B0069 SM00854 Bacterial capsule synthesis protein PGA_cap BAMEG_B0073 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BAMEG_B0107 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BAMEG_B0108 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BAMEG_B0108 SM00493 BAMEG_B0108