H9401_0001 SM00382 ATPases associated with a variety of cellular activities H9401_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain H9401_0002 SM00480 DNA polymerase III beta subunit H9401_0005 SM00387 Histidine kinase-like ATPases H9401_0005 SM00433 TopoisomeraseII H9401_0006 SM00434 DNA Topoisomerase IV H9401_0008 SM00116 Domain in cystathionine beta-synthase and other proteins. H9401_0008 SM01240 H9401_0008 H9401_0009 SM00936 Penicillin-binding protein 5, C-terminal domain H9401_0018 SM00382 ATPases associated with a variety of cellular activities H9401_0020 SM00493 H9401_0020 H9401_0032 SM00966 SpoVT / AbrB like domain H9401_0035 SM00493 H9401_0035 H9401_0036 SM00650 Ribosomal RNA adenine dimethylases H9401_0045 SM01400 H9401_0045 H9401_0048 SM00487 DEAD-like helicases superfamily H9401_0048 SM00490 helicase superfamily c-terminal domain H9401_0048 SM00982 H9401_0048 H9401_0048 SM01058 CarD-like/TRCF domain H9401_0049 SM00966 SpoVT / AbrB like domain H9401_0052 SM00363 S4 RNA-binding domain H9401_0056 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_0057 SM00331 Sigma factor PP2C-like phosphatases H9401_0057 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain H9401_0058 SM00977 TilS substrate C-terminal domain H9401_0060 SM00382 ATPases associated with a variety of cellular activities H9401_0068 SM00905 Dihydroneopterin aldolase H9401_0075 SM00382 ATPases associated with a variety of cellular activities H9401_0075 SM01086 C-terminal, D2-small domain, of ClpB protein H9401_0076 SM00382 ATPases associated with a variety of cellular activities H9401_0078 SM00670 Large family of predicted nucleotide-binding domains H9401_0083 SM00840 H9401_0083 H9401_0084 SM00535 Ribonuclease III family H9401_0085 SM00967 RNA 2'-O ribose methyltransferase substrate binding H9401_0087 SM00421 helix_turn_helix, Lux Regulon H9401_0089 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. H9401_0090 SM00649 Ribosomal protein L11/L12 H9401_0096 SM00663 RNA polymerase I subunit A N-terminus H9401_0100 SM00838 Elongation factor G C-terminus H9401_0100 SM00889 Elongation factor G, domain IV H9401_0102 SM01403 H9401_0102 H9401_0106 SM01382 H9401_0106 H9401_0106 SM01383 H9401_0106 H9401_0109 SM00322 K homology RNA-binding domain H9401_0113 SM01374 H9401_0113 H9401_0114 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. H9401_0126 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_0130 SM00662 RNA polymerases D H9401_0132 SM00382 ATPases associated with a variety of cellular activities H9401_0133 SM00382 ATPases associated with a variety of cellular activities H9401_0139 SM00646 H9401_0139 H9401_0142 SM01251 H9401_0142 H9401_0153 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_0153 SM00895 H9401_0153 H9401_0157 SM01350 H9401_0157 H9401_0167 SM00930 H9401_0167 H9401_0170 SM00829 Enoylreductase H9401_0180 SM00382 ATPases associated with a variety of cellular activities H9401_0181 SM00382 ATPases associated with a variety of cellular activities H9401_0184 SM00342 helix_turn_helix, arabinose operon control protein H9401_0200 SM00563 Phosphate acyltransferases H9401_0202 SM00354 helix_turn _helix lactose operon repressor H9401_0212 SM00382 ATPases associated with a variety of cellular activities H9401_0218 SM00382 ATPases associated with a variety of cellular activities H9401_0219 SM00382 ATPases associated with a variety of cellular activities H9401_0234 SM00487 DEAD-like helicases superfamily H9401_0234 SM00490 helicase superfamily c-terminal domain H9401_0239 SM01005 Alanine racemase, C-terminal domain H9401_0242 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_0242 SM00732 Likely ribonuclease with RNase H fold. H9401_0243 SM00731 SprT homologues. H9401_0248 SM00382 ATPases associated with a variety of cellular activities H9401_0249 SM00881 CoA binding domain H9401_0251 SM00883 Chaperonin 10 Kd subunit H9401_0255 SM00448 cheY-homologous receiver domain H9401_0255 SM00862 Transcriptional regulatory protein, C terminal H9401_0256 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0256 SM00387 Histidine kinase-like ATPases H9401_0256 SM00388 His Kinase A (phosphoacceptor) domain H9401_0265 SM01001 AIR carboxylase H9401_0267 SM00998 Adenylosuccinate lyase C-terminus H9401_0270 SM01211 H9401_0270 H9401_0275 SM00798 AICARFT/IMPCHase bienzyme H9401_0275 SM00851 MGS-like domain H9401_0276 SM01209 H9401_0276 H9401_0276 SM01210 H9401_0276 H9401_0278 SM00244 prohibitin homologues H9401_0282 SM00278 Helix-hairpin-helix DNA-binding motif class 1 H9401_0282 SM00292 breast cancer carboxy-terminal domain H9401_0282 SM00532 Ligase N family H9401_0288 SM00382 ATPases associated with a variety of cellular activities H9401_0288 SM00930 H9401_0288 H9401_0294 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_0298 SM00845 GatB domain H9401_0299 SM00046 Diacylglycerol kinase catalytic domain (presumed) H9401_0302 SM00382 ATPases associated with a variety of cellular activities H9401_0315 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain H9401_0324 SM01007 Class II Aldolase and Adducin N-terminal domain H9401_0345 SM00062 Bacterial periplasmic substrate-binding proteins H9401_0345 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. H9401_0346 SM00382 ATPases associated with a variety of cellular activities H9401_0347 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_0347 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0348 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_0348 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0349 SM00642 Alpha-amylase domain H9401_0354 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain H9401_0354 SM00437 Bacterial DNA topoisomerase I DNA-binding domain H9401_0354 SM00493 H9401_0354 H9401_0358 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_0358 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0362 SM00382 ATPases associated with a variety of cellular activities H9401_0363 SM00382 ATPases associated with a variety of cellular activities H9401_0364 SM00060 Fibronectin type 3 domain H9401_0364 SM00636 H9401_0364 H9401_0364 SM00637 H9401_0364 H9401_0370 SM00530 Helix-turn-helix XRE-family like proteins H9401_0375 SM00946 Prolyl-tRNA synthetase, C-terminal H9401_0384 SM00831 Cation transporter/ATPase, N-terminus H9401_0386 SM00226 Low molecular weight phosphatase family H9401_0406 SM00478 endonuclease III H9401_0413 SM00530 Helix-turn-helix XRE-family like proteins H9401_0414 SM00530 Helix-turn-helix XRE-family like proteins H9401_0418 SM00382 ATPases associated with a variety of cellular activities H9401_0463 SM00382 ATPases associated with a variety of cellular activities H9401_0467 SM00530 Helix-turn-helix XRE-family like proteins H9401_0479 SM00984 UDP binding domain H9401_0495 SM00478 endonuclease III H9401_0495 SM00525 H9401_0495 H9401_0501 SM00382 ATPases associated with a variety of cellular activities H9401_0505 SM00382 ATPases associated with a variety of cellular activities H9401_0517 SM00567 E-Z type HEAT repeats H9401_0520 SM00052 Putative diguanylate phosphodiesterase H9401_0520 SM00091 PAS domain H9401_0520 SM00267 diguanylate cyclase H9401_0521 SM00763 PrkA AAA domain H9401_0523 SM00364 Leucine-rich repeats, bacterial type H9401_0523 SM00365 Leucine-rich repeat, SDS22-like subfamily H9401_0523 SM00369 Leucine-rich repeats, typical (most populated) subfamily H9401_0523 SM00725 NEAr Transporter domain H9401_0526 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins H9401_0528 SM00244 prohibitin homologues H9401_0529 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_0529 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0530 SM00091 PAS domain H9401_0530 SM00387 Histidine kinase-like ATPases H9401_0531 SM00448 cheY-homologous receiver domain H9401_0535 SM00248 ankyrin repeats H9401_0537 SM00382 ATPases associated with a variety of cellular activities H9401_0542 SM00448 cheY-homologous receiver domain H9401_0542 SM00862 Transcriptional regulatory protein, C terminal H9401_0543 SM00387 Histidine kinase-like ATPases H9401_0543 SM00388 His Kinase A (phosphoacceptor) domain H9401_0546 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_0546 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0547 SM00387 Histidine kinase-like ATPases H9401_0548 SM00448 cheY-homologous receiver domain H9401_0550 SM00919 Malic enzyme, NAD binding domain H9401_0550 SM01274 H9401_0550 H9401_0553 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_0555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0555 SM00387 Histidine kinase-like ATPases H9401_0555 SM00388 His Kinase A (phosphoacceptor) domain H9401_0556 SM00448 cheY-homologous receiver domain H9401_0556 SM00862 Transcriptional regulatory protein, C terminal H9401_0560 SM00926 Molybdopterin oxidoreductase Fe4S4 domain H9401_0560 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H9401_0564 SM01002 Alanine dehydrogenase/PNT, C-terminal domain H9401_0564 SM01003 Alanine dehydrogenase/PNT, N-terminal domain H9401_0566 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_0569 SM00028 Tetratricopeptide repeats H9401_0569 SM00530 Helix-turn-helix XRE-family like proteins H9401_0582 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_0588 SM00382 ATPases associated with a variety of cellular activities H9401_0593 SM00327 von Willebrand factor (vWF) type A domain H9401_0594 SM00382 ATPases associated with a variety of cellular activities H9401_0595 SM00155 Phospholipase D. Active site motifs. H9401_0598 SM00052 Putative diguanylate phosphodiesterase H9401_0598 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) H9401_0598 SM00091 PAS domain H9401_0598 SM00267 diguanylate cyclase H9401_0600 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_0600 SM00866 H9401_0600 H9401_0602 SM00642 Alpha-amylase domain H9401_0610 SM00382 ATPases associated with a variety of cellular activities H9401_0611 SM00062 Bacterial periplasmic substrate-binding proteins H9401_0611 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. H9401_0621 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_0621 SM00387 Histidine kinase-like ATPases H9401_0621 SM00388 His Kinase A (phosphoacceptor) domain H9401_0622 SM00448 cheY-homologous receiver domain H9401_0622 SM00862 Transcriptional regulatory protein, C terminal H9401_0630 SM00382 ATPases associated with a variety of cellular activities H9401_0631 SM00382 ATPases associated with a variety of cellular activities H9401_0633 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_0636 SM00354 helix_turn _helix lactose operon repressor H9401_0639 SM00382 ATPases associated with a variety of cellular activities H9401_0646 SM00829 Enoylreductase H9401_0648 SM00770 Zinc dependent phospholipase C (alpha toxin) H9401_0655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_0657 SM00530 Helix-turn-helix XRE-family like proteins H9401_0666 SM00530 Helix-turn-helix XRE-family like proteins H9401_0684 SM00899 H9401_0684 H9401_0690 SM00116 Domain in cystathionine beta-synthase and other proteins. H9401_0693 SM00287 Bacterial SH3 domain homologues H9401_0711 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_0719 SM00640 Glycosyl hydrolases family 32 H9401_0721 SM00354 helix_turn _helix lactose operon repressor H9401_0735 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_0738 SM00450 Rhodanese Homology Domain H9401_0740 SM00450 Rhodanese Homology Domain H9401_0741 SM00450 Rhodanese Homology Domain H9401_0741 SM00849 Metallo-beta-lactamase superfamily H9401_0743 SM00450 Rhodanese Homology Domain H9401_0744 SM00450 Rhodanese Homology Domain H9401_0749 SM00829 Enoylreductase H9401_0759 SM00287 Bacterial SH3 domain homologues H9401_0761 SM00382 ATPases associated with a variety of cellular activities H9401_0773 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen H9401_0792 SM00344 helix_turn_helix ASNC type H9401_0806 SM01060 H9401_0806 H9401_0812 SM00382 ATPases associated with a variety of cellular activities H9401_0814 SM00382 ATPases associated with a variety of cellular activities H9401_0815 SM00062 Bacterial periplasmic substrate-binding proteins H9401_0815 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. H9401_0817 SM00382 ATPases associated with a variety of cellular activities H9401_0831 SM00644 H9401_0831 H9401_0833 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_0840 SM00957 SecA DEAD-like domain H9401_0840 SM00958 SecA preprotein cross-linking domain H9401_0843 SM00635 Bacterial Ig-like domain 2 H9401_0854 SM00646 H9401_0854 H9401_0871 SM00382 ATPases associated with a variety of cellular activities H9401_0875 SM00860 SMI1 / KNR4 family H9401_0876 SM00860 SMI1 / KNR4 family H9401_0878 SM00091 PAS domain H9401_0878 SM00387 Histidine kinase-like ATPases H9401_0879 SM00448 cheY-homologous receiver domain H9401_0886 SM00422 helix_turn_helix, mercury resistance H9401_0908 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_0915 SM01120 H9401_0915 H9401_0924 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_0928 SM00460 Transglutaminase/protease-like homologues H9401_0940 SM00331 Sigma factor PP2C-like phosphatases H9401_0940 SM00448 cheY-homologous receiver domain H9401_0941 SM00138 Methyltransferase, chemotaxis proteins H9401_0942 SM00387 Histidine kinase-like ATPases H9401_0942 SM00388 His Kinase A (phosphoacceptor) domain H9401_0942 SM00448 cheY-homologous receiver domain H9401_0950 SM00829 Enoylreductase H9401_0958 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_0963 SM00028 Tetratricopeptide repeats H9401_0968 SM00530 Helix-turn-helix XRE-family like proteins H9401_0979 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_0988 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_0991 SM00382 ATPases associated with a variety of cellular activities H9401_1005 SM00422 helix_turn_helix, mercury resistance H9401_1026 SM00354 helix_turn _helix lactose operon repressor H9401_1028 SM00849 Metallo-beta-lactamase superfamily H9401_1033 SM00725 NEAr Transporter domain H9401_1049 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_1052 SM00342 helix_turn_helix, arabinose operon control protein H9401_1052 SM00871 Bacterial transcription activator, effector binding domain H9401_1054 SM00387 Histidine kinase-like ATPases H9401_1054 SM00388 His Kinase A (phosphoacceptor) domain H9401_1055 SM00448 cheY-homologous receiver domain H9401_1055 SM00862 Transcriptional regulatory protein, C terminal H9401_1061 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_1061 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_1070 SM00357 Cold shock protein domain H9401_1093 SM01060 H9401_1093 H9401_1095 SM00642 Alpha-amylase domain H9401_1098 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_1108 SM00382 ATPases associated with a variety of cellular activities H9401_1108 SM01086 C-terminal, D2-small domain, of ClpB protein H9401_1114 SM00825 Beta-ketoacyl synthase H9401_1122 SM00382 ATPases associated with a variety of cellular activities H9401_1123 SM00382 ATPases associated with a variety of cellular activities H9401_1131 SM00155 Phospholipase D. Active site motifs. H9401_1137 SM01118 H9401_1137 H9401_1139 SM00954 Region found in RelA / SpoT proteins H9401_1171 SM00635 Bacterial Ig-like domain 2 H9401_1193 SM00861 Transketolase, pyrimidine binding domain H9401_1194 SM00530 Helix-turn-helix XRE-family like proteins H9401_1209 SM00530 Helix-turn-helix XRE-family like proteins H9401_1212 SM00382 ATPases associated with a variety of cellular activities H9401_1216 SM00014 Acid phosphatase homologues H9401_1227 SM00448 cheY-homologous receiver domain H9401_1227 SM00862 Transcriptional regulatory protein, C terminal H9401_1228 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_1228 SM00387 Histidine kinase-like ATPases H9401_1228 SM00388 His Kinase A (phosphoacceptor) domain H9401_1229 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_1229 SM00895 H9401_1229 H9401_1244 SM00822 H9401_1244 H9401_1257 SM00420 helix_turn_helix, Deoxyribose operon repressor H9401_1257 SM01134 H9401_1257 H9401_1261 SM00365 Leucine-rich repeat, SDS22-like subfamily H9401_1261 SM00369 Leucine-rich repeats, typical (most populated) subfamily H9401_1267 SM00387 Histidine kinase-like ATPases H9401_1267 SM00388 His Kinase A (phosphoacceptor) domain H9401_1268 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_1272 SM00387 Histidine kinase-like ATPases H9401_1272 SM00388 His Kinase A (phosphoacceptor) domain H9401_1285 SM00465 GIY-YIG type nucleases (URI domain) H9401_1285 SM00496 Intron-encoded nuclease repeat 2 H9401_1288 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_1289 SM00382 ATPases associated with a variety of cellular activities H9401_1291 SM00382 ATPases associated with a variety of cellular activities H9401_1295 SM00344 helix_turn_helix ASNC type H9401_1319 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_1332 SM00917 LeuA allosteric (dimerisation) domain H9401_1333 SM01329 H9401_1333 H9401_1370 SM00387 Histidine kinase-like ATPases H9401_1371 SM00421 helix_turn_helix, Lux Regulon H9401_1371 SM00448 cheY-homologous receiver domain H9401_1387 SM00091 PAS domain H9401_1387 SM00387 Histidine kinase-like ATPases H9401_1387 SM00388 His Kinase A (phosphoacceptor) domain H9401_1391 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_1391 SM00387 Histidine kinase-like ATPases H9401_1391 SM00388 His Kinase A (phosphoacceptor) domain H9401_1402 SM00363 S4 RNA-binding domain H9401_1406 SM00448 cheY-homologous receiver domain H9401_1406 SM00862 Transcriptional regulatory protein, C terminal H9401_1407 SM00091 PAS domain H9401_1407 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_1407 SM00387 Histidine kinase-like ATPases H9401_1407 SM00388 His Kinase A (phosphoacceptor) domain H9401_1409 SM00257 Lysin motif H9401_1414 SM00487 DEAD-like helicases superfamily H9401_1414 SM00490 helicase superfamily c-terminal domain H9401_1416 SM00257 Lysin motif H9401_1419 SM00422 helix_turn_helix, mercury resistance H9401_1421 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase H9401_1424 SM00644 H9401_1424 H9401_1426 SM00870 H9401_1426 H9401_1428 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_1429 SM01240 H9401_1429 H9401_1440 SM00411 bacterial (prokaryotic) histone like domain H9401_1445 SM00562 H9401_1445 H9401_1449 SM00028 Tetratricopeptide repeats H9401_1450 SM00914 H9401_1450 H9401_1459 SM00986 Uracil DNA glycosylase superfamily H9401_1459 SM00987 UreE urease accessory protein, C-terminal domain H9401_1463 SM00851 MGS-like domain H9401_1472 SM00479 H9401_1472 H9401_1472 SM00487 DEAD-like helicases superfamily H9401_1472 SM00491 H9401_1472 H9401_1477 SM00478 endonuclease III H9401_1477 SM00525 H9401_1477 H9401_1479 SM00060 Fibronectin type 3 domain H9401_1490 SM00981 H9401_1490 H9401_1492 SM00491 H9401_1492 H9401_1506 SM00450 Rhodanese Homology Domain H9401_1512 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs H9401_1512 SM00475 5'-3' exonuclease H9401_1535 SM00357 Cold shock protein domain H9401_1545 SM00849 Metallo-beta-lactamase superfamily H9401_1546 SM00422 helix_turn_helix, mercury resistance H9401_1546 SM00871 Bacterial transcription activator, effector binding domain H9401_1565 SM00448 cheY-homologous receiver domain H9401_1566 SM00073 Histidine Phosphotransfer domain H9401_1567 SM00260 Two component signalling adaptor domain H9401_1567 SM00387 Histidine kinase-like ATPases H9401_1567 SM01231 H9401_1567 H9401_1571 SM00138 Methyltransferase, chemotaxis proteins H9401_1588 SM00382 ATPases associated with a variety of cellular activities H9401_1598 SM00260 Two component signalling adaptor domain H9401_1598 SM00448 cheY-homologous receiver domain H9401_1605 SM00028 Tetratricopeptide repeats H9401_1608 SM00028 Tetratricopeptide repeats H9401_1624 SM00382 ATPases associated with a variety of cellular activities H9401_1624 SM00962 SRP54-type protein, GTPase domain H9401_1626 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain H9401_1636 SM00530 Helix-turn-helix XRE-family like proteins H9401_1640 SM00382 ATPases associated with a variety of cellular activities H9401_1643 SM00849 Metallo-beta-lactamase superfamily H9401_1643 SM01027 Beta-Casp domain H9401_1647 SM00835 Cupin H9401_1650 SM00855 Phosphoglycerate mutase family H9401_1663 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_1663 SM00895 H9401_1663 H9401_1665 SM00833 Cobalamin synthesis protein cobW C-terminal domain H9401_1683 SM00530 Helix-turn-helix XRE-family like proteins H9401_1692 SM00421 helix_turn_helix, Lux Regulon H9401_1692 SM00448 cheY-homologous receiver domain H9401_1694 SM00382 ATPases associated with a variety of cellular activities H9401_1697 SM00155 Phospholipase D. Active site motifs. H9401_1701 SM00919 Malic enzyme, NAD binding domain H9401_1701 SM01274 H9401_1701 H9401_1702 SM00387 Histidine kinase-like ATPases H9401_1703 SM00448 cheY-homologous receiver domain H9401_1704 SM00487 DEAD-like helicases superfamily H9401_1704 SM00490 helicase superfamily c-terminal domain H9401_1716 SM00646 H9401_1716 H9401_1717 SM00047 Lysozyme subfamily 2 H9401_1753 SM00854 Bacterial capsule synthesis protein PGA_cap H9401_1759 SM00850 LytTr DNA-binding domain H9401_1771 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_1773 SM00448 cheY-homologous receiver domain H9401_1773 SM00862 Transcriptional regulatory protein, C terminal H9401_1774 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_1775 SM00387 Histidine kinase-like ATPases H9401_1775 SM00388 His Kinase A (phosphoacceptor) domain H9401_1778 SM00450 Rhodanese Homology Domain H9401_1789 SM01133 H9401_1789 H9401_1791 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain H9401_1798 SM01011 Aminopeptidase P, N-terminal domain H9401_1800 SM00287 Bacterial SH3 domain homologues H9401_1802 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain H9401_1802 SM00437 Bacterial DNA topoisomerase I DNA-binding domain H9401_1802 SM00493 H9401_1802 H9401_1823 SM00833 Cobalamin synthesis protein cobW C-terminal domain H9401_1830 SM00382 ATPases associated with a variety of cellular activities H9401_1831 SM00382 ATPases associated with a variety of cellular activities H9401_1838 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_1842 SM00382 ATPases associated with a variety of cellular activities H9401_1843 SM00382 ATPases associated with a variety of cellular activities H9401_1849 SM00287 Bacterial SH3 domain homologues H9401_1852 SM00382 ATPases associated with a variety of cellular activities H9401_1853 SM00448 cheY-homologous receiver domain H9401_1853 SM00862 Transcriptional regulatory protein, C terminal H9401_1854 SM00387 Histidine kinase-like ATPases H9401_1854 SM00388 His Kinase A (phosphoacceptor) domain H9401_1872 SM00448 cheY-homologous receiver domain H9401_1872 SM00862 Transcriptional regulatory protein, C terminal H9401_1873 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_1873 SM00387 Histidine kinase-like ATPases H9401_1873 SM00388 His Kinase A (phosphoacceptor) domain H9401_1893 SM00460 Transglutaminase/protease-like homologues H9401_1899 SM00966 SpoVT / AbrB like domain H9401_1901 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_1908 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_1908 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_1920 SM00833 Cobalamin synthesis protein cobW C-terminal domain H9401_1939 SM00855 Phosphoglycerate mutase family H9401_1949 SM00155 Phospholipase D. Active site motifs. H9401_1955 SM01091 Transporter associated domain H9401_1969 SM00244 prohibitin homologues H9401_1970 SM00855 Phosphoglycerate mutase family H9401_1973 SM01005 Alanine racemase, C-terminal domain H9401_1979 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2002 SM00487 DEAD-like helicases superfamily H9401_2002 SM00490 helicase superfamily c-terminal domain H9401_2006 SM00829 Enoylreductase H9401_2010 SM00849 Metallo-beta-lactamase superfamily H9401_2013 SM00460 Transglutaminase/protease-like homologues H9401_2018 SM00926 Molybdopterin oxidoreductase Fe4S4 domain H9401_2022 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2023 SM00382 ATPases associated with a variety of cellular activities H9401_2025 SM00100 Cyclic nucleotide-monophosphate binding domain H9401_2025 SM00419 helix_turn_helix, cAMP Regulatory protein H9401_2026 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_2028 SM00852 Probable molybdopterin binding domain H9401_2041 SM00894 Excalibur calcium-binding domain H9401_2051 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_2052 SM00382 ATPases associated with a variety of cellular activities H9401_2059 SM00567 E-Z type HEAT repeats H9401_2059 SM00932 Scaffold protein Nfu/NifU N terminal H9401_2063 SM00836 DALR anticodon binding domain H9401_2063 SM01016 Arginyl tRNA synthetase N terminal dom H9401_2066 SM00028 Tetratricopeptide repeats H9401_2067 SM00028 Tetratricopeptide repeats H9401_2073 SM00327 von Willebrand factor (vWF) type A domain H9401_2076 SM00382 ATPases associated with a variety of cellular activities H9401_2079 SM00028 Tetratricopeptide repeats H9401_2086 SM00857 Resolvase, N terminal domain H9401_2097 SM00448 cheY-homologous receiver domain H9401_2097 SM00862 Transcriptional regulatory protein, C terminal H9401_2098 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_2098 SM00387 Histidine kinase-like ATPases H9401_2098 SM00388 His Kinase A (phosphoacceptor) domain H9401_2114 SM00382 ATPases associated with a variety of cellular activities H9401_2127 SM00563 Phosphate acyltransferases H9401_2149 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. H9401_2150 SM00421 helix_turn_helix, Lux Regulon H9401_2150 SM00448 cheY-homologous receiver domain H9401_2153 SM00829 Enoylreductase H9401_2167 SM00382 ATPases associated with a variety of cellular activities H9401_2175 SM01091 Transporter associated domain H9401_2178 SM00387 Histidine kinase-like ATPases H9401_2178 SM00388 His Kinase A (phosphoacceptor) domain H9401_2182 SM00882 Coenzyme A transferase H9401_2183 SM00882 Coenzyme A transferase H9401_2186 SM00382 ATPases associated with a variety of cellular activities H9401_2194 SM00219 Tyrosine kinase, catalytic domain H9401_2196 SM00014 Acid phosphatase homologues H9401_2200 SM00860 SMI1 / KNR4 family H9401_2215 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. H9401_2243 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_2251 SM00823 Phosphopantetheine attachment site H9401_2251 SM00824 Thioesterase H9401_2252 SM00923 MbtH-like protein H9401_2256 SM00411 bacterial (prokaryotic) histone like domain H9401_2265 SM00363 S4 RNA-binding domain H9401_2267 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain H9401_2280 SM00849 Metallo-beta-lactamase superfamily H9401_2285 SM00849 Metallo-beta-lactamase superfamily H9401_2289 SM01059 Chloramphenicol acetyltransferase H9401_2294 SM00530 Helix-turn-helix XRE-family like proteins H9401_2302 SM00357 Cold shock protein domain H9401_2314 SM00859 Semialdehyde dehydrogenase, NAD binding domain H9401_2321 SM00382 ATPases associated with a variety of cellular activities H9401_2322 SM00382 ATPases associated with a variety of cellular activities H9401_2323 SM00646 H9401_2323 H9401_2325 SM00530 Helix-turn-helix XRE-family like proteins H9401_2344 SM01207 H9401_2344 H9401_2348 SM00849 Metallo-beta-lactamase superfamily H9401_2351 SM00487 DEAD-like helicases superfamily H9401_2351 SM00490 helicase superfamily c-terminal domain H9401_2358 SM00382 ATPases associated with a variety of cellular activities H9401_2363 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_2364 SM00855 Phosphoglycerate mutase family H9401_2383 SM00014 Acid phosphatase homologues H9401_2384 SM00354 helix_turn _helix lactose operon repressor H9401_2400 SM00530 Helix-turn-helix XRE-family like proteins H9401_2404 SM00646 H9401_2404 H9401_2408 SM00382 ATPases associated with a variety of cellular activities H9401_2410 SM00052 Putative diguanylate phosphodiesterase H9401_2410 SM00091 PAS domain H9401_2410 SM00267 diguanylate cyclase H9401_2413 SM00860 SMI1 / KNR4 family H9401_2415 SM00450 Rhodanese Homology Domain H9401_2415 SM00849 Metallo-beta-lactamase superfamily H9401_2418 SM00382 ATPases associated with a variety of cellular activities H9401_2424 SM00878 Biotin carboxylase C-terminal domain H9401_2436 SM00387 Histidine kinase-like ATPases H9401_2436 SM00388 His Kinase A (phosphoacceptor) domain H9401_2437 SM00448 cheY-homologous receiver domain H9401_2437 SM00862 Transcriptional regulatory protein, C terminal H9401_2449 SM00382 ATPases associated with a variety of cellular activities H9401_2453 SM00871 Bacterial transcription activator, effector binding domain H9401_2459 SM00342 helix_turn_helix, arabinose operon control protein H9401_2462 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2472 SM00448 cheY-homologous receiver domain H9401_2472 SM00862 Transcriptional regulatory protein, C terminal H9401_2474 SM00387 Histidine kinase-like ATPases H9401_2476 SM00382 ATPases associated with a variety of cellular activities H9401_2479 SM00382 ATPases associated with a variety of cellular activities H9401_2486 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2487 SM01209 H9401_2487 H9401_2511 SM00091 PAS domain H9401_2511 SM00387 Histidine kinase-like ATPases H9401_2511 SM00388 His Kinase A (phosphoacceptor) domain H9401_2516 SM00382 ATPases associated with a variety of cellular activities H9401_2519 SM00387 Histidine kinase-like ATPases H9401_2519 SM00388 His Kinase A (phosphoacceptor) domain H9401_2523 SM00829 Enoylreductase H9401_2524 SM00740 H9401_2524 H9401_2536 SM00422 helix_turn_helix, mercury resistance H9401_2544 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2556 SM00480 DNA polymerase III beta subunit H9401_2577 SM00465 GIY-YIG type nucleases (URI domain) H9401_2600 SM00642 Alpha-amylase domain H9401_2604 SM00871 Bacterial transcription activator, effector binding domain H9401_2608 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2631 SM00382 ATPases associated with a variety of cellular activities H9401_2635 SM00420 helix_turn_helix, Deoxyribose operon repressor H9401_2635 SM01134 H9401_2635 H9401_2646 SM00861 Transketolase, pyrimidine binding domain H9401_2656 SM00116 Domain in cystathionine beta-synthase and other proteins. H9401_2656 SM00382 ATPases associated with a variety of cellular activities H9401_2663 SM00060 Fibronectin type 3 domain H9401_2663 SM00495 Chitin-binding domain type 3 H9401_2673 SM00849 Metallo-beta-lactamase superfamily H9401_2687 SM00341 Helicase and RNase D C-terminal H9401_2687 SM00487 DEAD-like helicases superfamily H9401_2687 SM00490 helicase superfamily c-terminal domain H9401_2687 SM00956 H9401_2687 H9401_2695 SM01131 H9401_2695 H9401_2701 SM01130 H9401_2701 H9401_2705 SM00091 PAS domain H9401_2705 SM00382 ATPases associated with a variety of cellular activities H9401_2719 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain H9401_2728 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain H9401_2729 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_2729 SM00387 Histidine kinase-like ATPases H9401_2729 SM00388 His Kinase A (phosphoacceptor) domain H9401_2730 SM00862 Transcriptional regulatory protein, C terminal H9401_2731 SM00448 cheY-homologous receiver domain H9401_2772 SM00382 ATPases associated with a variety of cellular activities H9401_2773 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2784 SM00062 Bacterial periplasmic substrate-binding proteins H9401_2785 SM00382 ATPases associated with a variety of cellular activities H9401_2791 SM00028 Tetratricopeptide repeats H9401_2810 SM00382 ATPases associated with a variety of cellular activities H9401_2821 SM00830 Chorismate mutase type II H9401_2830 SM00287 Bacterial SH3 domain homologues H9401_2840 SM00382 ATPases associated with a variety of cellular activities H9401_2845 SM01133 H9401_2845 H9401_2851 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_2855 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase H9401_2859 SM00346 helix_turn_helix isocitrate lyase regulation H9401_2863 SM00098 Alkaline phosphatase homologues H9401_2865 SM00530 Helix-turn-helix XRE-family like proteins H9401_2870 SM00850 LytTr DNA-binding domain H9401_2890 SM01060 H9401_2890 H9401_2901 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_2902 SM00889 Elongation factor G, domain IV H9401_2909 SM00382 ATPases associated with a variety of cellular activities H9401_2910 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2912 SM00382 ATPases associated with a variety of cellular activities H9401_2917 SM00342 helix_turn_helix, arabinose operon control protein H9401_2917 SM00871 Bacterial transcription activator, effector binding domain H9401_2922 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_2926 SM00387 Histidine kinase-like ATPases H9401_2926 SM00388 His Kinase A (phosphoacceptor) domain H9401_2927 SM00448 cheY-homologous receiver domain H9401_2927 SM00862 Transcriptional regulatory protein, C terminal H9401_2954 SM00797 Allophanate hydrolase subunit 2 H9401_2955 SM00796 Allophanate hydrolase subunit 1 H9401_2956 SM00346 helix_turn_helix isocitrate lyase regulation H9401_2960 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_2973 SM00849 Metallo-beta-lactamase superfamily H9401_2990 SM00870 H9401_2990 H9401_2991 SM00530 Helix-turn-helix XRE-family like proteins H9401_2999 SM00919 Malic enzyme, NAD binding domain H9401_2999 SM01274 H9401_2999 H9401_3007 SM00448 cheY-homologous receiver domain H9401_3008 SM00387 Histidine kinase-like ATPases H9401_3018 SM01060 H9401_3018 H9401_3044 SM00382 ATPases associated with a variety of cellular activities H9401_3049 SM00226 Low molecular weight phosphatase family H9401_3052 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_3054 SM00028 Tetratricopeptide repeats H9401_3058 SM00344 helix_turn_helix ASNC type H9401_3071 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_3078 SM00448 cheY-homologous receiver domain H9401_3078 SM00862 Transcriptional regulatory protein, C terminal H9401_3079 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_3079 SM00387 Histidine kinase-like ATPases H9401_3079 SM00388 His Kinase A (phosphoacceptor) domain H9401_3100 SM00382 ATPases associated with a variety of cellular activities H9401_3104 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_3104 SM00387 Histidine kinase-like ATPases H9401_3104 SM00388 His Kinase A (phosphoacceptor) domain H9401_3105 SM00448 cheY-homologous receiver domain H9401_3105 SM00862 Transcriptional regulatory protein, C terminal H9401_3107 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_3127 SM00354 helix_turn _helix lactose operon repressor H9401_3128 SM00028 Tetratricopeptide repeats H9401_3135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_3135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_3135 SM00319 Homologues of the ligand binding domain of Tar H9401_3141 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins H9401_3145 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_3154 SM00344 helix_turn_helix ASNC type H9401_3166 SM00342 helix_turn_helix, arabinose operon control protein H9401_3170 SM00287 Bacterial SH3 domain homologues H9401_3186 SM00382 ATPases associated with a variety of cellular activities H9401_3189 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_3202 SM00382 ATPases associated with a variety of cellular activities H9401_3211 SM00530 Helix-turn-helix XRE-family like proteins H9401_3212 SM01207 H9401_3212 H9401_3224 SM00382 ATPases associated with a variety of cellular activities H9401_3227 SM00530 Helix-turn-helix XRE-family like proteins H9401_3239 SM01266 H9401_3239 H9401_3241 SM00382 ATPases associated with a variety of cellular activities H9401_3250 SM00028 Tetratricopeptide repeats H9401_3255 SM01091 Transporter associated domain H9401_3256 SM00422 helix_turn_helix, mercury resistance H9401_3264 SM01350 H9401_3264 H9401_3265 SM00861 Transketolase, pyrimidine binding domain H9401_3268 SM00829 Enoylreductase H9401_3271 SM00829 Enoylreductase H9401_3274 SM01276 H9401_3274 H9401_3283 SM00914 H9401_3283 H9401_3289 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_3289 SM00866 H9401_3289 H9401_3297 SM00849 Metallo-beta-lactamase superfamily H9401_3311 SM00248 ankyrin repeats H9401_3312 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_3313 SM00636 H9401_3313 H9401_3321 SM00871 Bacterial transcription activator, effector binding domain H9401_3325 SM00382 ATPases associated with a variety of cellular activities H9401_3330 SM00849 Metallo-beta-lactamase superfamily H9401_3331 SM00641 Glycosyl hydrolases family 25 H9401_3344 SM00849 Metallo-beta-lactamase superfamily H9401_3345 SM00829 Enoylreductase H9401_3371 SM00829 Enoylreductase H9401_3372 SM00855 Phosphoglycerate mutase family H9401_3374 SM00533 DNA-binding domain of DNA mismatch repair MUTS family H9401_3374 SM00534 ATPase domain of DNA mismatch repair MUTS family H9401_3377 SM00642 Alpha-amylase domain H9401_3390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_3391 SM00829 Enoylreductase H9401_3393 SM00028 Tetratricopeptide repeats H9401_3407 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins H9401_3416 SM00479 H9401_3416 H9401_3417 SM00357 Cold shock protein domain H9401_3422 SM01022 H9401_3422 H9401_3444 SM00852 Probable molybdopterin binding domain H9401_3452 SM00926 Molybdopterin oxidoreductase Fe4S4 domain H9401_3452 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H9401_3474 SM00382 ATPases associated with a variety of cellular activities H9401_3477 SM00434 DNA Topoisomerase IV H9401_3478 SM00387 Histidine kinase-like ATPases H9401_3478 SM00433 TopoisomeraseII H9401_3479 SM00881 CoA binding domain H9401_3480 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. H9401_3481 SM00448 cheY-homologous receiver domain H9401_3481 SM00862 Transcriptional regulatory protein, C terminal H9401_3484 SM01207 H9401_3484 H9401_3487 SM00257 Lysin motif H9401_3487 SM00636 H9401_3487 H9401_3491 SM00479 H9401_3491 H9401_3494 SM00382 ATPases associated with a variety of cellular activities H9401_3502 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain H9401_3515 SM00644 H9401_3515 H9401_3515 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. H9401_3516 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain H9401_3519 SM00091 PAS domain H9401_3519 SM00387 Histidine kinase-like ATPases H9401_3519 SM00388 His Kinase A (phosphoacceptor) domain H9401_3525 SM01058 CarD-like/TRCF domain H9401_3555 SM00644 H9401_3555 H9401_3558 SM00382 ATPases associated with a variety of cellular activities H9401_3559 SM00382 ATPases associated with a variety of cellular activities H9401_3562 SM00861 Transketolase, pyrimidine binding domain H9401_3566 SM00382 ATPases associated with a variety of cellular activities H9401_3567 SM00062 Bacterial periplasmic substrate-binding proteins H9401_3571 SM00857 Resolvase, N terminal domain H9401_3578 SM00028 Tetratricopeptide repeats H9401_3585 SM00287 Bacterial SH3 domain homologues H9401_3585 SM00644 H9401_3585 H9401_3614 SM00530 Helix-turn-helix XRE-family like proteins H9401_3631 SM00382 ATPases associated with a variety of cellular activities H9401_3640 SM00530 Helix-turn-helix XRE-family like proteins H9401_3646 SM01230 H9401_3646 H9401_3647 SM00422 helix_turn_helix, mercury resistance H9401_3652 SM00382 ATPases associated with a variety of cellular activities H9401_3658 SM00287 Bacterial SH3 domain homologues H9401_3661 SM00420 helix_turn_helix, Deoxyribose operon repressor H9401_3661 SM01134 H9401_3661 H9401_3668 SM00636 H9401_3668 H9401_3672 SM00411 bacterial (prokaryotic) histone like domain H9401_3679 SM00382 ATPases associated with a variety of cellular activities H9401_3685 SM00342 helix_turn_helix, arabinose operon control protein H9401_3687 SM00478 endonuclease III H9401_3695 SM00052 Putative diguanylate phosphodiesterase H9401_3695 SM00091 PAS domain H9401_3695 SM00267 diguanylate cyclase H9401_3701 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_3705 SM00148 Phospholipase C, catalytic domain (part); domain X H9401_3707 SM00257 Lysin motif H9401_3713 SM00387 Histidine kinase-like ATPases H9401_3713 SM00388 His Kinase A (phosphoacceptor) domain H9401_3714 SM00448 cheY-homologous receiver domain H9401_3714 SM00862 Transcriptional regulatory protein, C terminal H9401_3717 SM00382 ATPases associated with a variety of cellular activities H9401_3718 SM00853 MutL C terminal dimerisation domain H9401_3718 SM01340 H9401_3718 H9401_3719 SM00533 DNA-binding domain of DNA mismatch repair MUTS family H9401_3719 SM00534 ATPase domain of DNA mismatch repair MUTS family H9401_3722 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_3728 SM00322 K homology RNA-binding domain H9401_3728 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_3730 SM00382 ATPases associated with a variety of cellular activities H9401_3731 SM00852 Probable molybdopterin binding domain H9401_3742 SM00382 ATPases associated with a variety of cellular activities H9401_3744 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_3744 SM00866 H9401_3744 H9401_3745 SM00382 ATPases associated with a variety of cellular activities H9401_3745 SM00843 H9401_3745 H9401_3748 SM00849 Metallo-beta-lactamase superfamily H9401_3749 SM01130 H9401_3749 H9401_3751 SM00859 Semialdehyde dehydrogenase, NAD binding domain H9401_3757 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_3757 SM00322 K homology RNA-binding domain H9401_3758 SM00904 Riboflavin kinase H9401_3765 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_3765 SM00322 K homology RNA-binding domain H9401_3767 SM00479 H9401_3767 H9401_3767 SM00481 DNA polymerase alpha chain like domain H9401_3769 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. H9401_3778 SM00382 ATPases associated with a variety of cellular activities H9401_3778 SM01086 C-terminal, D2-small domain, of ClpB protein H9401_3782 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain H9401_3782 SM00437 Bacterial DNA topoisomerase I DNA-binding domain H9401_3784 SM00881 CoA binding domain H9401_3794 SM00382 ATPases associated with a variety of cellular activities H9401_3794 SM00962 SRP54-type protein, GTPase domain H9401_3794 SM00963 SRP54-type protein, helical bundle domain H9401_3796 SM00382 ATPases associated with a variety of cellular activities H9401_3796 SM00962 SRP54-type protein, GTPase domain H9401_3796 SM00963 SRP54-type protein, helical bundle domain H9401_3797 SM00968 SMC proteins Flexible Hinge Domain H9401_3798 SM00358 Double-stranded RNA binding motif H9401_3798 SM00535 Ribonuclease III family H9401_3800 SM00822 H9401_3800 H9401_3801 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. H9401_3804 SM00487 DEAD-like helicases superfamily H9401_3804 SM00490 helicase superfamily c-terminal domain H9401_3805 SM01120 H9401_3805 H9401_3805 SM01121 H9401_3805 H9401_3808 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain H9401_3811 SM00220 Serine/Threonine protein kinases, catalytic domain H9401_3811 SM00740 H9401_3811 H9401_3812 SM00331 Sigma factor PP2C-like phosphatases H9401_3812 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain H9401_3817 SM00487 DEAD-like helicases superfamily H9401_3817 SM00490 helicase superfamily c-terminal domain H9401_3819 SM01409 H9401_3819 H9401_3820 SM00072 Guanylate kinase homologues. H9401_3823 SM00831 Cation transporter/ATPase, N-terminus H9401_3833 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family H9401_3836 SM00851 MGS-like domain H9401_3836 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain H9401_3836 SM01209 H9401_3836 H9401_3837 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain H9401_3842 SM00363 S4 RNA-binding domain H9401_3847 SM00363 S4 RNA-binding domain H9401_3856 SM00864 Tubulin/FtsZ family, GTPase domain H9401_3856 SM00865 Tubulin/FtsZ family, C-terminal domain H9401_3857 SM00842 Cell division protein FtsA H9401_3865 SM00740 H9401_3865 H9401_3866 SM00740 H9401_3866 H9401_3872 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains H9401_3881 SM00530 Helix-turn-helix XRE-family like proteins H9401_3884 SM00644 H9401_3884 H9401_3927 SM00382 ATPases associated with a variety of cellular activities H9401_3932 SM00530 Helix-turn-helix XRE-family like proteins H9401_3933 SM00530 Helix-turn-helix XRE-family like proteins H9401_3942 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. H9401_3951 SM00855 Phosphoglycerate mutase family H9401_3964 SM00878 Biotin carboxylase C-terminal domain H9401_3968 SM00670 Large family of predicted nucleotide-binding domains H9401_3973 SM00838 Elongation factor G C-terminus H9401_3988 SM00861 Transketolase, pyrimidine binding domain H9401_3994 SM00849 Metallo-beta-lactamase superfamily H9401_4008 SM00052 Putative diguanylate phosphodiesterase H9401_4017 SM00267 diguanylate cyclase H9401_4025 SM00387 Histidine kinase-like ATPases H9401_4025 SM00388 His Kinase A (phosphoacceptor) domain H9401_4028 SM00354 helix_turn _helix lactose operon repressor H9401_4032 SM00642 Alpha-amylase domain H9401_4033 SM00642 Alpha-amylase domain H9401_4034 SM00382 ATPases associated with a variety of cellular activities H9401_4040 SM00382 ATPases associated with a variety of cellular activities H9401_4057 SM01007 Class II Aldolase and Adducin N-terminal domain H9401_4063 SM00267 diguanylate cyclase H9401_4070 SM01061 CAT RNA binding domain H9401_4072 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_4072 SM00866 H9401_4072 H9401_4075 SM00849 Metallo-beta-lactamase superfamily H9401_4094 SM00387 Histidine kinase-like ATPases H9401_4096 SM00936 Penicillin-binding protein 5, C-terminal domain H9401_4097 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_4098 SM00382 ATPases associated with a variety of cellular activities H9401_4102 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_4106 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain H9401_4126 SM00354 helix_turn _helix lactose operon repressor H9401_4130 SM00704 CDGSH-type zinc finger. Function unknown. H9401_4136 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_4136 SM00876 Biotin and Thiamin Synthesis associated domain H9401_4147 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_4154 SM00859 Semialdehyde dehydrogenase, NAD binding domain H9401_4163 SM00849 Metallo-beta-lactamase superfamily H9401_4171 SM00382 ATPases associated with a variety of cellular activities H9401_4173 SM00062 Bacterial periplasmic substrate-binding proteins H9401_4173 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. H9401_4179 SM00861 Transketolase, pyrimidine binding domain H9401_4183 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase H9401_4185 SM00091 PAS domain H9401_4185 SM00382 ATPases associated with a variety of cellular activities H9401_4190 SM00448 cheY-homologous receiver domain H9401_4191 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. H9401_4194 SM00363 S4 RNA-binding domain H9401_4195 SM00861 Transketolase, pyrimidine binding domain H9401_4202 SM00878 Biotin carboxylase C-terminal domain H9401_4211 SM00382 ATPases associated with a variety of cellular activities H9401_4214 SM00841 Elongation factor P, C-terminal H9401_4214 SM01185 H9401_4214 H9401_4221 SM00529 Helix-turn-helix diphteria tox regulatory element H9401_4226 SM00450 Rhodanese Homology Domain H9401_4227 SM00354 helix_turn _helix lactose operon repressor H9401_4237 SM00382 ATPases associated with a variety of cellular activities H9401_4238 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_4244 SM00487 DEAD-like helicases superfamily H9401_4244 SM00490 helicase superfamily c-terminal domain H9401_4253 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. H9401_4260 SM00382 ATPases associated with a variety of cellular activities H9401_4271 SM01018 B12 binding domain H9401_4276 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_4278 SM00849 Metallo-beta-lactamase superfamily H9401_4286 SM00382 ATPases associated with a variety of cellular activities H9401_4298 SM00382 ATPases associated with a variety of cellular activities H9401_4301 SM00518 AP endonuclease family 2 H9401_4302 SM00487 DEAD-like helicases superfamily H9401_4302 SM00490 helicase superfamily c-terminal domain H9401_4310 SM00400 zinc finger H9401_4310 SM00493 H9401_4310 H9401_4310 SM00766 DNA primase DnaG DnaB-binding H9401_4313 SM00116 Domain in cystathionine beta-synthase and other proteins. H9401_4320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_4326 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_4329 SM00271 DnaJ molecular chaperone homology domain H9401_4333 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_4335 SM00838 Elongation factor G C-terminus H9401_4341 SM00849 Metallo-beta-lactamase superfamily H9401_4344 SM00278 Helix-hairpin-helix DNA-binding motif class 1 H9401_4348 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_4350 SM01103 H9401_4350 H9401_4361 SM00954 Region found in RelA / SpoT proteins H9401_4363 SM00098 Alkaline phosphatase homologues H9401_4369 SM00855 Phosphoglycerate mutase family H9401_4379 SM00530 Helix-turn-helix XRE-family like proteins H9401_4384 SM00382 ATPases associated with a variety of cellular activities H9401_4403 SM00732 Likely ribonuclease with RNase H fold. H9401_4405 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain H9401_4412 SM00028 Tetratricopeptide repeats H9401_4416 SM00382 ATPases associated with a variety of cellular activities H9401_4423 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_4423 SM00954 Region found in RelA / SpoT proteins H9401_4432 SM01323 H9401_4432 H9401_4436 SM00382 ATPases associated with a variety of cellular activities H9401_4437 SM00278 Helix-hairpin-helix DNA-binding motif class 1 H9401_4442 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_4445 SM00257 Lysin motif H9401_4456 SM00382 ATPases associated with a variety of cellular activities H9401_4457 SM00387 Histidine kinase-like ATPases H9401_4459 SM00448 cheY-homologous receiver domain H9401_4459 SM00862 Transcriptional regulatory protein, C terminal H9401_4461 SM01317 H9401_4461 H9401_4479 SM00257 Lysin motif H9401_4481 SM01004 Delta-aminolevulinic acid dehydratase H9401_4487 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_4490 SM00382 ATPases associated with a variety of cellular activities H9401_4490 SM00464 Found in ATP-dependent protease La (LON) H9401_4491 SM00382 ATPases associated with a variety of cellular activities H9401_4492 SM00382 ATPases associated with a variety of cellular activities H9401_4492 SM00994 ClpX C4-type zinc finger H9401_4492 SM01086 C-terminal, D2-small domain, of ClpB protein H9401_4501 SM00909 Sporulation and spore germination H9401_4509 SM00421 helix_turn_helix, Lux Regulon H9401_4517 SM00382 ATPases associated with a variety of cellular activities H9401_4518 SM00382 ATPases associated with a variety of cellular activities H9401_4520 SM00342 helix_turn_helix, arabinose operon control protein H9401_4520 SM00448 cheY-homologous receiver domain H9401_4524 SM00530 Helix-turn-helix XRE-family like proteins H9401_4529 SM00382 ATPases associated with a variety of cellular activities H9401_4540 SM00465 GIY-YIG type nucleases (URI domain) H9401_4542 SM00893 Electron transfer flavoprotein domain H9401_4543 SM00893 Electron transfer flavoprotein domain H9401_4557 SM00382 ATPases associated with a variety of cellular activities H9401_4558 SM00387 Histidine kinase-like ATPases H9401_4558 SM00388 His Kinase A (phosphoacceptor) domain H9401_4559 SM00448 cheY-homologous receiver domain H9401_4559 SM00862 Transcriptional regulatory protein, C terminal H9401_4562 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase H9401_4566 SM00382 ATPases associated with a variety of cellular activities H9401_4569 SM00725 NEAr Transporter domain H9401_4570 SM00725 NEAr Transporter domain H9401_4571 SM00725 NEAr Transporter domain H9401_4573 SM00363 S4 RNA-binding domain H9401_4574 SM00463 Small MutS-related domain H9401_4574 SM00533 DNA-binding domain of DNA mismatch repair MUTS family H9401_4574 SM00534 ATPase domain of DNA mismatch repair MUTS family H9401_4575 SM00278 Helix-hairpin-helix DNA-binding motif class 1 H9401_4575 SM00481 DNA polymerase alpha chain like domain H9401_4575 SM00483 DNA polymerase X family H9401_4582 SM00873 B3/4 domain H9401_4582 SM00874 tRNA synthetase B5 domain H9401_4582 SM00896 Ferredoxin-fold anticodon binding domain H9401_4584 SM00967 RNA 2'-O ribose methyltransferase substrate binding H9401_4599 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain H9401_4601 SM00382 ATPases associated with a variety of cellular activities H9401_4606 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9401_4609 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain H9401_4609 SM01232 H9401_4609 H9401_4610 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs H9401_4610 SM00474 3'-5' exonuclease H9401_4610 SM00475 5'-3' exonuclease H9401_4610 SM00482 DNA polymerase A domain H9401_4611 SM00091 PAS domain H9401_4611 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_4611 SM00387 Histidine kinase-like ATPases H9401_4611 SM00388 His Kinase A (phosphoacceptor) domain H9401_4612 SM00448 cheY-homologous receiver domain H9401_4612 SM00862 Transcriptional regulatory protein, C terminal H9401_4616 SM01329 H9401_4616 H9401_4625 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_4626 SM00919 Malic enzyme, NAD binding domain H9401_4626 SM01274 H9401_4626 H9401_4627 SM00481 DNA polymerase alpha chain like domain H9401_4635 SM00116 Domain in cystathionine beta-synthase and other proteins. H9401_4637 SM00849 Metallo-beta-lactamase superfamily H9401_4647 SM00530 Helix-turn-helix XRE-family like proteins H9401_4649 SM01002 Alanine dehydrogenase/PNT, C-terminal domain H9401_4649 SM01003 Alanine dehydrogenase/PNT, N-terminal domain H9401_4674 SM00981 H9401_4674 H9401_4684 SM00363 S4 RNA-binding domain H9401_4684 SM01390 H9401_4684 H9401_4687 SM00363 S4 RNA-binding domain H9401_4693 SM00116 Domain in cystathionine beta-synthase and other proteins. H9401_4696 SM00448 cheY-homologous receiver domain H9401_4696 SM00862 Transcriptional regulatory protein, C terminal H9401_4697 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_4697 SM00387 Histidine kinase-like ATPases H9401_4697 SM00388 His Kinase A (phosphoacceptor) domain H9401_4698 SM00248 ankyrin repeats H9401_4705 SM00354 helix_turn _helix lactose operon repressor H9401_4715 SM00843 H9401_4715 H9401_4723 SM00849 Metallo-beta-lactamase superfamily H9401_4727 SM00642 Alpha-amylase domain H9401_4732 SM00363 S4 RNA-binding domain H9401_4737 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_4742 SM01058 CarD-like/TRCF domain H9401_4749 SM00852 Probable molybdopterin binding domain H9401_4753 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_4757 SM00450 Rhodanese Homology Domain H9401_4775 SM00382 ATPases associated with a variety of cellular activities H9401_4779 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_4781 SM00382 ATPases associated with a variety of cellular activities H9401_4789 SM00014 Acid phosphatase homologues H9401_4792 SM00852 Probable molybdopterin binding domain H9401_4802 SM00387 Histidine kinase-like ATPases H9401_4803 SM00387 Histidine kinase-like ATPases H9401_4803 SM00388 His Kinase A (phosphoacceptor) domain H9401_4810 SM00382 ATPases associated with a variety of cellular activities H9401_4820 SM01234 H9401_4820 H9401_4821 SM00947 Carbonic anhydrase H9401_4825 SM00894 Excalibur calcium-binding domain H9401_4836 SM00899 H9401_4836 H9401_4838 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_4838 SM00387 Histidine kinase-like ATPases H9401_4838 SM00388 His Kinase A (phosphoacceptor) domain H9401_4839 SM00448 cheY-homologous receiver domain H9401_4839 SM00862 Transcriptional regulatory protein, C terminal H9401_4845 SM00046 Diacylglycerol kinase catalytic domain (presumed) H9401_4855 SM00382 ATPases associated with a variety of cellular activities H9401_4856 SM00342 helix_turn_helix, arabinose operon control protein H9401_4856 SM00871 Bacterial transcription activator, effector binding domain H9401_4857 SM00448 cheY-homologous receiver domain H9401_4857 SM00862 Transcriptional regulatory protein, C terminal H9401_4858 SM00387 Histidine kinase-like ATPases H9401_4862 SM00382 ATPases associated with a variety of cellular activities H9401_4867 SM00345 helix_turn_helix gluconate operon transcriptional repressor H9401_4867 SM00866 H9401_4867 H9401_4875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_4875 SM00387 Histidine kinase-like ATPases H9401_4875 SM00388 His Kinase A (phosphoacceptor) domain H9401_4876 SM00448 cheY-homologous receiver domain H9401_4876 SM00862 Transcriptional regulatory protein, C terminal H9401_4877 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain H9401_4885 SM00357 Cold shock protein domain H9401_4892 SM00642 Alpha-amylase domain H9401_4899 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_4901 SM00344 helix_turn_helix ASNC type H9401_4908 SM01298 H9401_4908 H9401_4909 SM00479 H9401_4909 H9401_4928 SM00871 Bacterial transcription activator, effector binding domain H9401_4940 SM00382 ATPases associated with a variety of cellular activities H9401_4945 SM00860 SMI1 / KNR4 family H9401_4958 SM00420 helix_turn_helix, Deoxyribose operon repressor H9401_4964 SM00422 helix_turn_helix, mercury resistance H9401_4967 SM00855 Phosphoglycerate mutase family H9401_4969 SM00729 Elongator protein 3, MiaB family, Radical SAM H9401_4981 SM00382 ATPases associated with a variety of cellular activities H9401_4985 SM00382 ATPases associated with a variety of cellular activities H9401_4985 SM00930 H9401_4985 H9401_4989 SM00493 H9401_4989 H9401_5004 SM00849 Metallo-beta-lactamase superfamily H9401_5014 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_5014 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_5027 SM00530 Helix-turn-helix XRE-family like proteins H9401_5032 SM00448 cheY-homologous receiver domain H9401_5032 SM00862 Transcriptional regulatory protein, C terminal H9401_5033 SM00387 Histidine kinase-like ATPases H9401_5033 SM00388 His Kinase A (phosphoacceptor) domain H9401_5037 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_5037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_5041 SM00347 helix_turn_helix multiple antibiotic resistance protein H9401_5061 SM01276 H9401_5061 H9401_5068 SM00363 S4 RNA-binding domain H9401_5070 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain H9401_5071 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_5081 SM00382 ATPases associated with a variety of cellular activities H9401_5085 SM00448 cheY-homologous receiver domain H9401_5085 SM00862 Transcriptional regulatory protein, C terminal H9401_5088 SM00316 Ribosomal protein S1-like RNA-binding domain H9401_5088 SM00357 Cold shock protein domain H9401_5088 SM00955 H9401_5088 H9401_5107 SM00507 HNH nucleases H9401_5115 SM01192 H9401_5115 H9401_5115 SM01193 H9401_5115 H9401_5119 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H9401_5138 SM00028 Tetratricopeptide repeats H9401_5146 SM00487 DEAD-like helicases superfamily H9401_5146 SM00490 helicase superfamily c-terminal domain H9401_5150 SM00422 helix_turn_helix, mercury resistance H9401_5154 SM00530 Helix-turn-helix XRE-family like proteins H9401_5157 SM00422 helix_turn_helix, mercury resistance H9401_5159 SM00382 ATPases associated with a variety of cellular activities H9401_5161 SM00382 ATPases associated with a variety of cellular activities H9401_5163 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. H9401_5163 SM00245 tail specific protease H9401_5165 SM00382 ATPases associated with a variety of cellular activities H9401_5170 SM00957 SecA DEAD-like domain H9401_5170 SM00958 SecA preprotein cross-linking domain H9401_5173 SM00357 Cold shock protein domain H9401_5175 SM00487 DEAD-like helicases superfamily H9401_5175 SM00490 helicase superfamily c-terminal domain H9401_5182 SM00984 UDP binding domain H9401_5185 SM00382 ATPases associated with a variety of cellular activities H9401_5186 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. H9401_5218 SM00287 Bacterial SH3 domain homologues H9401_5224 SM00287 Bacterial SH3 domain homologues H9401_5230 SM00487 DEAD-like helicases superfamily H9401_5230 SM00490 helicase superfamily c-terminal domain H9401_5239 SM00382 ATPases associated with a variety of cellular activities H9401_5245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_5245 SM00387 Histidine kinase-like ATPases H9401_5245 SM00388 His Kinase A (phosphoacceptor) domain H9401_5246 SM00448 cheY-homologous receiver domain H9401_5246 SM00862 Transcriptional regulatory protein, C terminal H9401_5252 SM00287 Bacterial SH3 domain homologues H9401_5252 SM00382 ATPases associated with a variety of cellular activities H9401_5254 SM00984 UDP binding domain H9401_5269 SM00382 ATPases associated with a variety of cellular activities H9401_5270 SM00850 LytTr DNA-binding domain H9401_5287 SM00052 Putative diguanylate phosphodiesterase H9401_5287 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) H9401_5287 SM00091 PAS domain H9401_5287 SM00267 diguanylate cyclase H9401_5291 SM00382 ATPases associated with a variety of cellular activities H9401_5305 SM00226 Low molecular weight phosphatase family H9401_5308 SM00903 Flavin reductase like domain H9401_5315 SM00937 H9401_5315 H9401_5318 SM00357 Cold shock protein domain H9401_5318 SM00382 ATPases associated with a variety of cellular activities H9401_5318 SM00959 Rho termination factor, N-terminal domain H9401_5322 SM00448 cheY-homologous receiver domain H9401_5332 SM00155 Phospholipase D. Active site motifs. H9401_5334 SM00052 Putative diguanylate phosphodiesterase H9401_5334 SM00267 diguanylate cyclase H9401_5337 SM00530 Helix-turn-helix XRE-family like proteins H9401_5338 SM00421 helix_turn_helix, Lux Regulon H9401_5338 SM00448 cheY-homologous receiver domain H9401_5339 SM00387 Histidine kinase-like ATPases H9401_5341 SM00382 ATPases associated with a variety of cellular activities H9401_5352 SM00836 DALR anticodon binding domain H9401_5352 SM01016 Arginyl tRNA synthetase N terminal dom H9401_5361 SM00422 helix_turn_helix, mercury resistance H9401_5368 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. H9401_5370 SM00382 ATPases associated with a variety of cellular activities H9401_5380 SM00936 Penicillin-binding protein 5, C-terminal domain H9401_5389 SM00986 Uracil DNA glycosylase superfamily H9401_5389 SM00987 UreE urease accessory protein, C-terminal domain H9401_5391 SM00382 ATPases associated with a variety of cellular activities H9401_5393 SM00354 helix_turn _helix lactose operon repressor H9401_5401 SM00100 Cyclic nucleotide-monophosphate binding domain H9401_5403 SM00421 helix_turn_helix, Lux Regulon H9401_5403 SM00448 cheY-homologous receiver domain H9401_5405 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. H9401_5407 SM00267 diguanylate cyclase H9401_5410 SM00448 cheY-homologous receiver domain H9401_5410 SM00850 LytTr DNA-binding domain H9401_5417 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). H9401_5422 SM00382 ATPases associated with a variety of cellular activities H9401_5434 SM00448 cheY-homologous receiver domain H9401_5434 SM00850 LytTr DNA-binding domain H9401_5435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. H9401_5435 SM00387 Histidine kinase-like ATPases H9401_5446 SM00487 DEAD-like helicases superfamily H9401_5446 SM00490 helicase superfamily c-terminal domain H9401_5448 SM01240 H9401_5448 H9401_5453 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. H9401_5454 SM00849 Metallo-beta-lactamase superfamily H9401_5457 SM00091 PAS domain H9401_5457 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain H9401_5457 SM00387 Histidine kinase-like ATPases H9401_5457 SM00388 His Kinase A (phosphoacceptor) domain H9401_5458 SM00448 cheY-homologous receiver domain H9401_5458 SM00862 Transcriptional regulatory protein, C terminal H9401_5459 SM00788 Adenylosuccinate synthetase H9401_5462 SM00267 diguanylate cyclase H9401_5471 SM00470 ParB-like nuclease domain H9401_5473 SM00470 ParB-like nuclease domain H9401_5475 SM01228 H9401_5475 H9401_5477 SM00393 Putative single-stranded nucleic acids-binding domain H9401_5477 SM01245 H9401_5477 H9401_5492 SM00507 HNH nucleases H9401_5493 SM00487 DEAD-like helicases superfamily H9401_5513 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain H9401_5537 SM00530 Helix-turn-helix XRE-family like proteins H9401_5539 SM00843 H9401_5539 H9401_5542 SM00864 Tubulin/FtsZ family, GTPase domain H9401_5590 SM00725 NEAr Transporter domain H9401_5595 SM00014 Acid phosphatase homologues H9401_5601 SM00984 UDP binding domain H9401_5627 SM00857 Resolvase, N terminal domain H9401_5636 SM00758 H9401_5636 H9401_5637 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_5656 SM00860 SMI1 / KNR4 family H9401_5665 SM00954 Region found in RelA / SpoT proteins H9401_5671 SM00028 Tetratricopeptide repeats H9401_5674 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_5678 SM00318 Staphylococcal nuclease homologues H9401_5680 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain H9401_5680 SM00437 Bacterial DNA topoisomerase I DNA-binding domain H9401_5680 SM00493 H9401_5680 H9401_5730 SM00646 H9401_5730 H9401_5741 SM00014 Acid phosphatase homologues H9401_5749 SM00854 Bacterial capsule synthesis protein PGA_cap H9401_5752 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor H9401_5784 SM00437 Bacterial DNA topoisomerase I DNA-binding domain H9401_5785 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain H9401_5785 SM00493 H9401_5785