locus-tag class description AS53_10 PF01925 Sulfite exporter TauE/SafE AS53_1001 PF01497 Periplasmic binding protein AS53_1002 PF01032 FecCD transport family AS53_1003 PF05163 DinB family AS53_1009 PF00005 ABC transporter AS53_1010 PF00512 His Kinase A (phospho-acceptor) domain AS53_1010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1011 PF00072 Response regulator receiver domain AS53_1011 PF00486 Transcriptional regulatory protein, C terminal AS53_1013 PF09962 Uncharacterized conserved protein (DUF2196) AS53_1014 PF17785 PUA-like domain AS53_1014 PF10672 S-adenosylmethionine-dependent methyltransferase AS53_1016 PF03992 Antibiotic biosynthesis monooxygenase AS53_1017 PF04203 Sortase domain AS53_1018 PF00005 ABC transporter AS53_1019 PF01032 FecCD transport family AS53_102 PF00589 Phage integrase family AS53_102 PF02899 Phage integrase, N-terminal SAM-like domain AS53_1020 PF01497 Periplasmic binding protein AS53_1021 PF01497 Periplasmic binding protein AS53_1022 PF05031 Iron Transport-associated domain AS53_1024 PF05031 Iron Transport-associated domain AS53_1025 PF05525 Branched-chain amino acid transport protein AS53_1026 PF00849 RNA pseudouridylate synthase AS53_1026 PF01479 S4 domain AS53_1028 PF01713 Smr domain AS53_1028 PF00488 MutS domain V AS53_1029 PF14791 DNA polymerase beta thumb AS53_1029 PF14716 Helix-hairpin-helix domain AS53_1029 PF02811 PHP domain AS53_103 PF00120 Glutamine synthetase, catalytic domain AS53_103 PF03951 Glutamine synthetase, beta-Grasp domain AS53_1030 PF02674 Colicin V production protein AS53_1031 PF05164 Cell division protein ZapA AS53_1032 PF01351 Ribonuclease HII AS53_1032 PF11858 Domain of unknown function (DUF3378) AS53_1036 PF01336 OB-fold nucleic acid binding domain AS53_1036 PF00152 tRNA synthetases class II (D, K and N) AS53_1037 PF01588 Putative tRNA binding domain AS53_1037 PF03147 Ferredoxin-fold anticodon binding domain AS53_1037 PF03484 tRNA synthetase B5 domain AS53_1037 PF03483 B3/4 domain AS53_1037 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AS53_1038 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AS53_1038 PF01409 tRNA synthetases class II core domain (F) AS53_1039 PF08032 RNA 2'-O ribose methyltransferase substrate binding AS53_1039 PF00588 SpoU rRNA Methylase family AS53_104 PF13411 MerR HTH family regulatory protein AS53_1040 PF14098 Small, acid-soluble spore protein I AS53_1041 PF01966 HD domain AS53_1046 PF07690 Major Facilitator Superfamily AS53_1048 PF00440 Bacterial regulatory proteins, tetR family AS53_1048 PF16859 Tetracyclin repressor-like, C-terminal domain AS53_1049 PF05343 M42 glutamyl aminopeptidase AS53_105 PF06838 Methionine gamma-lyase AS53_1051 PF00453 Ribosomal protein L20 AS53_1052 PF01632 Ribosomal protein L35 AS53_1053 PF05198 Translation initiation factor IF-3, N-terminal domain AS53_1053 PF00707 Translation initiation factor IF-3, C-terminal domain AS53_1054 PF02824 TGS domain AS53_1054 PF03129 Anticodon binding domain AS53_1054 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS53_1054 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS53_1055 PF08812 YtxC-like family AS53_1056 PF07319 Primosomal protein DnaI N-terminus AS53_1056 PF01695 IstB-like ATP binding protein AS53_1057 PF07261 Replication initiation and membrane attachment AS53_1058 PF07261 Replication initiation and membrane attachment AS53_1059 PF03477 ATP cone domain AS53_106 PF16360 GTP-binding GTPase Middle Region AS53_106 PF13167 GTP-binding GTPase N-terminal AS53_106 PF01926 50S ribosome-binding GTPase AS53_1060 PF02675 S-adenosylmethionine decarboxylase AS53_1061 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AS53_1061 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS53_1062 PF01121 Dephospho-CoA kinase AS53_1063 PF02659 Putative manganese efflux pump AS53_1064 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AS53_1064 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AS53_1064 PF06827 Zinc finger found in FPG and IleRS AS53_1065 PF01367 5'-3' exonuclease, C-terminal SAM fold AS53_1065 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AS53_1065 PF00476 DNA polymerase family A AS53_1066 PF00512 His Kinase A (phospho-acceptor) domain AS53_1066 PF00989 PAS fold AS53_1066 PF16736 Single Cache-like AS53_1066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1067 PF00486 Transcriptional regulatory protein, C terminal AS53_1067 PF00072 Response regulator receiver domain AS53_107 PF16360 GTP-binding GTPase Middle Region AS53_107 PF13167 GTP-binding GTPase N-terminal AS53_107 PF01926 50S ribosome-binding GTPase AS53_1070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS53_1070 PF00056 lactate/malate dehydrogenase, NAD binding domain AS53_1071 PF00180 Isocitrate/isopropylmalate dehydrogenase AS53_1072 PF00285 Citrate synthase, C-terminal domain AS53_1073 PF04284 Protein of unknown function (DUF441) AS53_1074 PF01594 AI-2E family transporter AS53_1075 PF04186 FxsA cytoplasmic membrane protein AS53_1076 PF02887 Pyruvate kinase, alpha/beta domain AS53_1076 PF00224 Pyruvate kinase, barrel domain AS53_1076 PF00391 PEP-utilising enzyme, mobile domain AS53_1077 PF00365 Phosphofructokinase AS53_1078 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AS53_1079 PF01039 Carboxyl transferase domain AS53_1079 PF17848 Acetyl-coA carboxylase zinc finger domain AS53_108 PF03458 UPF0126 domain AS53_1080 PF00392 Bacterial regulatory proteins, gntR family AS53_1081 PF03949 Malic enzyme, NAD binding domain AS53_1081 PF00390 Malic enzyme, N-terminal domain AS53_1082 PF01336 OB-fold nucleic acid binding domain AS53_1082 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS53_1082 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS53_1082 PF14579 Helix-hairpin-helix motif AS53_1082 PF02811 PHP domain AS53_1083 PF14034 Sporulation protein YtrH AS53_1085 PF02272 DHHA1 domain AS53_1085 PF01368 DHH family AS53_1086 PF14007 YtpI-like protein AS53_1089 PF03061 Thioesterase superfamily AS53_1089 PF00571 CBS domain AS53_1089 PF07085 DRTGG domain AS53_1089 PF00392 Bacterial regulatory proteins, gntR family AS53_109 PF17866 AAA lid domain AS53_109 PF00004 ATPase family associated with various cellular activities (AAA) AS53_1092 PF01321 Creatinase/Prolidase N-terminal domain AS53_1092 PF00557 Metallopeptidase family M24 AS53_1093 PF11518 Protein of unknown function (DUF3221) AS53_1099 PF12746 GNAT acetyltransferase AS53_1100 PF07883 Cupin domain AS53_1102 PF01381 Helix-turn-helix AS53_1104 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS53_1104 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AS53_1106 PF00582 Universal stress protein family AS53_1110 PF00206 Lyase AS53_1110 PF14698 Argininosuccinate lyase C-terminal AS53_1111 PF00764 Arginosuccinate synthase AS53_1115 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_1115 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_1116 PF12787 EcsC protein family AS53_1119 PF00871 Acetokinase family AS53_1120 PF02384 N-6 DNA Methylase AS53_1121 PF08534 Redoxin AS53_1122 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AS53_1124 PF01513 ATP-NAD kinase AS53_1125 PF07969 Amidohydrolase family AS53_1127 PF13193 AMP-binding enzyme C-terminal domain AS53_1127 PF00501 AMP-binding enzyme AS53_1128 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS53_1129 PF02568 Thiamine biosynthesis protein (ThiI) AS53_1129 PF02926 THUMP domain AS53_113 PF17209 Hfq protein AS53_1130 PF00266 Aminotransferase class-V AS53_1131 PF06160 Septation ring formation regulator, EzrA AS53_1132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_1132 PF03466 LysR substrate binding domain AS53_1133 PF00892 EamA-like transporter family AS53_1134 PF00440 Bacterial regulatory proteins, tetR family AS53_1135 PF00440 Bacterial regulatory proteins, tetR family AS53_1136 PF13185 GAF domain AS53_1137 PF01053 Cys/Met metabolism PLP-dependent enzyme AS53_1138 PF00163 Ribosomal protein S4/S9 N-terminal domain AS53_1138 PF01479 S4 domain AS53_1141 PF01479 S4 domain AS53_1141 PF00579 tRNA synthetases class I (W and Y) AS53_1143 PF08281 Sigma-70, region 4 AS53_1143 PF04542 Sigma-70 region 2 AS53_1145 PF00501 AMP-binding enzyme AS53_1145 PF13193 AMP-binding enzyme C-terminal domain AS53_1146 PF00583 Acetyltransferase (GNAT) family AS53_1147 PF00571 CBS domain AS53_1148 PF00850 Histone deacetylase domain AS53_1150 PF00072 Response regulator receiver domain AS53_1150 PF00486 Transcriptional regulatory protein, C terminal AS53_1151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1151 PF00672 HAMP domain AS53_1151 PF00512 His Kinase A (phospho-acceptor) domain AS53_1151 PF13426 PAS domain AS53_1152 PF12796 Ankyrin repeats (3 copies) AS53_1153 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS53_1154 PF01741 Large-conductance mechanosensitive channel, MscL AS53_1159 PF00356 Bacterial regulatory proteins, lacI family AS53_116 PF06725 3D domain AS53_116 PF01476 LysM domain AS53_1160 PF07537 CamS sex pheromone cAM373 precursor AS53_1161 PF11009 Protein of unknown function (DUF2847) AS53_1163 PF02073 Thermophilic metalloprotease (M29) AS53_1167 PF13302 Acetyltransferase (GNAT) domain AS53_1168 PF08245 Mur ligase middle domain AS53_1168 PF02875 Mur ligase family, glutamate ligase domain AS53_1168 PF01225 Mur ligase family, catalytic domain AS53_117 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS53_117 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS53_1170 PF09397 Ftsk gamma domain AS53_1170 PF01580 FtsK/SpoIIIE family AS53_1170 PF17854 FtsK alpha domain AS53_1172 PF14794 Domain of unknown function (DUF4479) AS53_1172 PF01588 Putative tRNA binding domain AS53_1173 PF07285 Protein of unknown function (DUF1444) AS53_1174 PF00085 Thioredoxin AS53_1175 PF01931 Protein of unknown function DUF84 AS53_1176 PF05343 M42 glutamyl aminopeptidase AS53_1178 PF00753 Metallo-beta-lactamase superfamily AS53_1179 PF02390 Putative methyltransferase AS53_118 PF00294 pfkB family carbohydrate kinase AS53_1180 PF14165 YtzH-like protein AS53_1181 PF01636 Phosphotransferase enzyme family AS53_1182 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS53_1182 PF17999 Pullulanase N1-terminal domain AS53_1182 PF00128 Alpha amylase, catalytic domain AS53_1183 PF02834 LigT like Phosphoesterase AS53_1184 PF01546 Peptidase family M20/M25/M40 AS53_1185 PF01546 Peptidase family M20/M25/M40 AS53_1186 PF08220 DeoR-like helix-turn-helix domain AS53_1187 PF00849 RNA pseudouridylate synthase AS53_1187 PF01479 S4 domain AS53_1188 PF14667 Polysaccharide biosynthesis C-terminal domain AS53_1188 PF01943 Polysaccharide biosynthesis protein AS53_119 PF00455 DeoR C terminal sensor domain AS53_119 PF08220 DeoR-like helix-turn-helix domain AS53_1190 PF07690 Major Facilitator Superfamily AS53_1191 PF01022 Bacterial regulatory protein, arsR family AS53_1192 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AS53_1194 PF10957 Sporulation protein Cse60 AS53_1196 PF02559 CarD-like/TRCF domain AS53_1198 PF06800 Sugar transport protein AS53_12 PF01471 Putative peptidoglycan binding domain AS53_12 PF01510 N-acetylmuramoyl-L-alanine amidase AS53_120 PF00465 Iron-containing alcohol dehydrogenase AS53_1201 PF02391 MoaE protein AS53_1202 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AS53_1203 PF03453 MoeA N-terminal region (domain I and II) AS53_1203 PF03454 MoeA C-terminal region (domain IV) AS53_1203 PF00994 Probable molybdopterin binding domain AS53_1204 PF01967 MoaC family AS53_1205 PF00899 ThiF family AS53_1206 PF06463 Molybdenum Cofactor Synthesis C AS53_1206 PF04055 Radical SAM superfamily AS53_121 PF00465 Iron-containing alcohol dehydrogenase AS53_1210 PF00581 Rhodanese-like domain AS53_1212 PF00561 alpha/beta hydrolase fold AS53_1213 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_1214 PF03845 Spore germination protein AS53_1219 PF09334 tRNA synthetases class I (M) AS53_1219 PF13603 Leucyl-tRNA synthetase, Domain 2 AS53_1219 PF00133 tRNA synthetases class I (I, L, M and V) AS53_1219 PF08264 Anticodon-binding domain of tRNA AS53_122 PF04238 Protein of unknown function (DUF420) AS53_1220 PF07690 Major Facilitator Superfamily AS53_1221 PF00999 Sodium/hydrogen exchanger family AS53_1222 PF02080 TrkA-C domain AS53_1223 PF00589 Phage integrase family AS53_1225 PF00005 ABC transporter AS53_1226 PF07786 Protein of unknown function (DUF1624) AS53_1226 PF04235 Protein of unknown function (DUF418) AS53_1228 PF10732 Protein of unknown function (DUF2524) AS53_1229 PF16199 Radical_SAM C-terminal domain AS53_1229 PF04055 Radical SAM superfamily AS53_1230 PF06962 Putative rRNA methylase AS53_1231 PF00005 ABC transporter AS53_1231 PF13732 Domain of unknown function (DUF4162) AS53_1233 PF01177 Asp/Glu/Hydantoin racemase AS53_1236 PF10776 Protein of unknown function (DUF2600) AS53_1237 PF12146 Serine aminopeptidase, S33 AS53_1238 PF00132 Bacterial transferase hexapeptide (six repeats) AS53_1239 PF01569 PAP2 superfamily AS53_1240 PF13439 Glycosyltransferase Family 4 AS53_1240 PF00534 Glycosyl transferases group 1 AS53_1241 PF12804 MobA-like NTP transferase domain AS53_1242 PF00994 Probable molybdopterin binding domain AS53_1245 PF02773 S-adenosylmethionine synthetase, C-terminal domain AS53_1245 PF00438 S-adenosylmethionine synthetase, N-terminal domain AS53_1245 PF02772 S-adenosylmethionine synthetase, central domain AS53_1246 PF01293 Phosphoenolpyruvate carboxykinase AS53_125 PF00324 Amino acid permease AS53_1252 PF01784 NIF3 (NGG1p interacting factor 3) AS53_1253 PF00512 His Kinase A (phospho-acceptor) domain AS53_1253 PF00989 PAS fold AS53_1253 PF13188 PAS domain AS53_1253 PF13426 PAS domain AS53_1253 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1254 PF08447 PAS fold AS53_1254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1254 PF00512 His Kinase A (phospho-acceptor) domain AS53_1254 PF00989 PAS fold AS53_1255 PF00561 alpha/beta hydrolase fold AS53_1255 PF08386 TAP-like protein AS53_1256 PF00884 Sulfatase AS53_126 PF00704 Glycosyl hydrolases family 18 AS53_126 PF00041 Fibronectin type III domain AS53_1261 PF00005 ABC transporter AS53_1262 PF00528 Binding-protein-dependent transport system inner membrane component AS53_1268 PF00293 NUDIX domain AS53_1272 PF02664 S-Ribosylhomocysteinase (LuxS) AS53_1273 PF00484 Carbonic anhydrase AS53_1274 PF01809 Putative membrane protein insertion efficiency factor AS53_1275 PF01654 Cytochrome bd terminal oxidase subunit I AS53_1276 PF02322 Cytochrome bd terminal oxidase subunit II AS53_1277 PF10676 Spore germination protein gerPA/gerPF AS53_128 PF10518 TAT (twin-arginine translocation) pathway signal sequence AS53_128 PF00149 Calcineurin-like phosphoesterase AS53_1280 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_1280 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_1285 PF04012 PspA/IM30 family AS53_1289 PF07664 Ferrous iron transport protein B C terminus AS53_1289 PF02421 Ferrous iron transport protein B AS53_1289 PF07670 Nucleoside recognition AS53_1289 PF17910 FeoB cytosolic helical domain AS53_129 PF01226 Formate/nitrite transporter AS53_1291 PF09515 Thiamine transporter protein (Thia_YuaJ) AS53_1292 PF00512 His Kinase A (phospho-acceptor) domain AS53_1292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1292 PF00672 HAMP domain AS53_1293 PF00486 Transcriptional regulatory protein, C terminal AS53_1293 PF00072 Response regulator receiver domain AS53_1298 PF00156 Phosphoribosyl transferase domain AS53_1299 PF00781 Diacylglycerol kinase catalytic domain AS53_130 PF00216 Bacterial DNA-binding protein AS53_1303 PF00248 Aldo/keto reductase family AS53_1306 PF09335 SNARE associated Golgi protein AS53_1307 PF00398 Ribosomal RNA adenine dimethylase AS53_1308 PF02687 FtsX-like permease family AS53_1309 PF00005 ABC transporter AS53_131 PF00403 Heavy-metal-associated domain AS53_1310 PF06445 GyrI-like small molecule binding domain AS53_1310 PF12833 Helix-turn-helix domain AS53_1311 PF00486 Transcriptional regulatory protein, C terminal AS53_1311 PF00072 Response regulator receiver domain AS53_1312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1313 PF02687 FtsX-like permease family AS53_1315 PF02687 FtsX-like permease family AS53_1316 PF02687 FtsX-like permease family AS53_1317 PF00005 ABC transporter AS53_1318 PF02687 FtsX-like permease family AS53_1319 PF02687 FtsX-like permease family AS53_132 PF00403 Heavy-metal-associated domain AS53_1321 PF02447 GntP family permease AS53_1324 PF07071 KDGP aldolase AS53_1325 PF03841 L-seryl-tRNA selenium transferase AS53_1326 PF01979 Amidohydrolase family AS53_1329 PF02557 D-alanyl-D-alanine carboxypeptidase AS53_133 PF02583 Metal-sensitive transcriptional repressor AS53_1330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1330 PF00512 His Kinase A (phospho-acceptor) domain AS53_1331 PF00072 Response regulator receiver domain AS53_1331 PF00486 Transcriptional regulatory protein, C terminal AS53_1332 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS53_1332 PF13378 Enolase C-terminal domain-like AS53_1333 PF13193 AMP-binding enzyme C-terminal domain AS53_1333 PF00501 AMP-binding enzyme AS53_1334 PF00378 Enoyl-CoA hydratase/isomerase AS53_1335 PF00561 alpha/beta hydrolase fold AS53_1336 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS53_1336 PF16582 Middle domain of thiamine pyrophosphate AS53_1336 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS53_1337 PF00425 chorismate binding enzyme AS53_1338 PF01040 UbiA prenyltransferase family AS53_1339 PF01258 Prokaryotic dksA/traR C4-type zinc finger AS53_1340 PF00313 'Cold-shock' DNA-binding domain AS53_1344 PF00343 Carbohydrate phosphorylase AS53_1345 PF00534 Glycosyl transferases group 1 AS53_1345 PF08323 Starch synthase catalytic domain AS53_1346 PF00483 Nucleotidyl transferase AS53_1347 PF00483 Nucleotidyl transferase AS53_1348 PF02806 Alpha amylase, C-terminal all-beta domain AS53_1348 PF00128 Alpha amylase, catalytic domain AS53_1348 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS53_1349 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS53_1349 PF00056 lactate/malate dehydrogenase, NAD binding domain AS53_135 PF00756 Putative esterase AS53_136 PF00005 ABC transporter AS53_1368 PF05698 Bacterial trigger factor protein (TF) C-terminus AS53_1368 PF05697 Bacterial trigger factor protein (TF) AS53_137 PF01032 FecCD transport family AS53_138 PF01032 FecCD transport family AS53_1384 PF05697 Bacterial trigger factor protein (TF) AS53_1384 PF05698 Bacterial trigger factor protein (TF) C-terminus AS53_139 PF01497 Periplasmic binding protein AS53_1392 PF02308 MgtC family AS53_1393 PF08868 YugN-like family AS53_1394 PF07885 Ion channel AS53_1394 PF02254 TrkA-N domain AS53_1395 PF00342 Phosphoglucose isomerase AS53_1396 PF04070 Domain of unknown function (DUF378) AS53_1397 PF00575 S1 RNA binding domain AS53_1398 PF00155 Aminotransferase class I and II AS53_1399 PF01037 Lrp/AsnC ligand binding domain AS53_1400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS53_1400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS53_1401 PF00561 alpha/beta hydrolase fold AS53_1401 PF08386 TAP-like protein AS53_1403 PF00155 Aminotransferase class I and II AS53_1406 PF08810 Kinase associated protein B AS53_1407 PF00929 Exonuclease AS53_1408 PF03600 Citrate transporter AS53_141 PF03372 Endonuclease/Exonuclease/phosphatase family AS53_1411 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS53_1411 PF03129 Anticodon binding domain AS53_1412 PF03061 Thioesterase superfamily AS53_1414 PF02632 BioY family AS53_1416 PF00483 Nucleotidyl transferase AS53_1417 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AS53_1417 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AS53_1417 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AS53_1417 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AS53_1418 PF10372 Bacterial membrane-spanning protein N-terminus AS53_1418 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS53_1419 PF00883 Cytosol aminopeptidase family, catalytic domain AS53_1419 PF02789 Cytosol aminopeptidase family, N-terminal domain AS53_142 PF12833 Helix-turn-helix domain AS53_142 PF02805 Metal binding domain of Ada AS53_1420 PF06725 3D domain AS53_1422 PF00293 NUDIX domain AS53_1422 PF13344 Haloacid dehalogenase-like hydrolase AS53_1423 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_1424 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_1426 PF06445 GyrI-like small molecule binding domain AS53_1429 PF04463 Protein of unknown function (DUF523) AS53_143 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AS53_143 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AS53_1432 PF01521 Iron-sulphur cluster biosynthesis AS53_1433 PF01678 Diaminopimelate epimerase AS53_1434 PF07293 Protein of unknown function (DUF1450) AS53_1435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_1436 PF09383 NIL domain AS53_1436 PF00005 ABC transporter AS53_1437 PF03649 Uncharacterised protein family (UPF0014) AS53_1438 PF08274 PhnA Zinc-Ribbon AS53_1438 PF03831 PhnA domain AS53_144 PF00730 HhH-GPD superfamily base excision DNA repair protein AS53_144 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AS53_1446 PF07315 Protein of unknown function (DUF1462) AS53_1447 PF01106 NifU-like domain AS53_145 PF01546 Peptidase family M20/M25/M40 AS53_145 PF07687 Peptidase dimerisation domain AS53_1450 PF04608 Phosphatidylglycerophosphatase A AS53_1452 PF02525 Flavodoxin-like fold AS53_1453 PF13344 Haloacid dehalogenase-like hydrolase AS53_1455 PF01934 Protein of unknown function DUF86 AS53_1456 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AS53_1459 PF06265 Protein of unknown function (DUF1027) AS53_1460 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AS53_1461 PF07739 TipAS antibiotic-recognition domain AS53_1461 PF13411 MerR HTH family regulatory protein AS53_1462 PF10086 YhfC intramembrane metalloprotease AS53_1466 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AS53_1466 PF04055 Radical SAM superfamily AS53_1467 PF01551 Peptidase family M23 AS53_1469 PF08827 Domain of unknown function (DUF1805) AS53_1470 PF02872 5'-nucleotidase, C-terminal domain AS53_1471 PF03551 Transcriptional regulator PadR-like family AS53_1472 PF04892 VanZ like family AS53_1473 PF01458 Uncharacterized protein family (UPF0051) AS53_1474 PF01592 NifU-like N terminal domain AS53_1475 PF00266 Aminotransferase class-V AS53_1476 PF01458 Uncharacterized protein family (UPF0051) AS53_1477 PF00005 ABC transporter AS53_1478 PF03180 NLPA lipoprotein AS53_1479 PF03180 NLPA lipoprotein AS53_1480 PF00528 Binding-protein-dependent transport system inner membrane component AS53_1481 PF00005 ABC transporter AS53_1481 PF09383 NIL domain AS53_1483 PF00085 Thioredoxin AS53_1484 PF01751 Toprim domain AS53_1485 PF01597 Glycine cleavage H-protein AS53_1486 PF03960 ArsC family AS53_149 PF00561 alpha/beta hydrolase fold AS53_1495 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS53_1495 PF00056 lactate/malate dehydrogenase, NAD binding domain AS53_15 PF00005 ABC transporter AS53_15 PF00664 ABC transporter transmembrane region AS53_150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_1500 PF13305 Tetracyclin repressor-like, C-terminal domain AS53_1500 PF00440 Bacterial regulatory proteins, tetR family AS53_1501 PF00753 Metallo-beta-lactamase superfamily AS53_1502 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS53_1502 PF02770 Acyl-CoA dehydrogenase, middle domain AS53_1502 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS53_1503 PF00108 Thiolase, N-terminal domain AS53_1503 PF02803 Thiolase, C-terminal domain AS53_1504 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AS53_1504 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AS53_1504 PF00378 Enoyl-CoA hydratase/isomerase AS53_1505 PF14115 YuzL-like protein AS53_1506 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_1506 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_1507 PF01619 Proline dehydrogenase AS53_1508 PF10835 Protein of unknown function (DUF2573) AS53_1509 PF01910 Thiamine-binding protein AS53_151 PF00563 EAL domain AS53_151 PF00990 Diguanylate cyclase, GGDEF domain AS53_151 PF03707 Bacterial signalling protein N terminal repeat AS53_1510 PF00672 HAMP domain AS53_1510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_1510 PF02743 Cache domain AS53_1514 PF07690 Major Facilitator Superfamily AS53_1515 PF13520 Amino acid permease AS53_1517 PF02096 60Kd inner membrane protein AS53_1519 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_1519 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_1526 PF09335 SNARE associated Golgi protein AS53_1528 PF17969 L,D-transpeptidase C-terminal domain AS53_1528 PF03734 L,D-transpeptidase catalytic domain AS53_1529 PF00072 Response regulator receiver domain AS53_1529 PF00486 Transcriptional regulatory protein, C terminal AS53_153 PF10787 Uncharacterised protein from bacillus cereus group AS53_1530 PF00512 His Kinase A (phospho-acceptor) domain AS53_1530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1530 PF00989 PAS fold AS53_1530 PF16736 Single Cache-like AS53_1533 PF09334 tRNA synthetases class I (M) AS53_1533 PF08264 Anticodon-binding domain of tRNA AS53_1535 PF02743 Cache domain AS53_1535 PF00672 HAMP domain AS53_1535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_1536 PF01883 Iron-sulfur cluster assembly protein AS53_1537 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS53_1537 PF01447 Thermolysin metallopeptidase, catalytic domain AS53_1537 PF03413 Peptidase propeptide and YPEB domain AS53_1537 PF07504 Fungalysin/Thermolysin Propeptide Motif AS53_1538 PF02678 Pirin AS53_1538 PF17954 Quercetinase C-terminal cupin domain AS53_1539 PF01047 MarR family AS53_154 PF04172 LrgB-like family AS53_1541 PF00999 Sodium/hydrogen exchanger family AS53_1542 PF02080 TrkA-C domain AS53_1543 PF01235 Sodium:alanine symporter family AS53_1544 PF00210 Ferritin-like domain AS53_1547 PF03641 Possible lysine decarboxylase AS53_1549 PF00210 Ferritin-like domain AS53_155 PF03788 LrgA family AS53_1550 PF04235 Protein of unknown function (DUF418) AS53_1552 PF07662 Na+ dependent nucleoside transporter C-terminus AS53_1552 PF01773 Na+ dependent nucleoside transporter N-terminus AS53_1553 PF07662 Na+ dependent nucleoside transporter C-terminus AS53_1553 PF01773 Na+ dependent nucleoside transporter N-terminus AS53_1554 PF01235 Sodium:alanine symporter family AS53_1555 PF01235 Sodium:alanine symporter family AS53_1556 PF13460 NAD(P)H-binding AS53_156 PF00392 Bacterial regulatory proteins, gntR family AS53_156 PF00155 Aminotransferase class I and II AS53_1561 PF00248 Aldo/keto reductase family AS53_1562 PF07690 Major Facilitator Superfamily AS53_1563 PF01638 HxlR-like helix-turn-helix AS53_1564 PF07849 Protein of unknown function (DUF1641) AS53_1565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_1566 PF00579 tRNA synthetases class I (W and Y) AS53_1566 PF01479 S4 domain AS53_1567 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AS53_1567 PF01565 FAD binding domain AS53_1569 PF17202 Single cache domain 3 AS53_1569 PF00672 HAMP domain AS53_1569 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_157 PF00364 Biotin-requiring enzyme AS53_157 PF00561 alpha/beta hydrolase fold AS53_1571 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AS53_1572 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AS53_1575 PF13302 Acetyltransferase (GNAT) domain AS53_1576 PF06146 Phosphate-starvation-inducible E AS53_1579 PF00005 ABC transporter AS53_158 PF02585 GlcNAc-PI de-N-acetylase AS53_1580 PF01032 FecCD transport family AS53_1581 PF01032 FecCD transport family AS53_1583 PF00072 Response regulator receiver domain AS53_1583 PF00486 Transcriptional regulatory protein, C terminal AS53_1584 PF01668 SmpB protein AS53_1585 PF17876 Cold shock domain AS53_1585 PF00575 S1 RNA binding domain AS53_1585 PF08206 Ribonuclease B OB domain AS53_1585 PF00773 RNB domain AS53_1586 PF12146 Serine aminopeptidase, S33 AS53_1587 PF03840 Preprotein translocase SecG subunit AS53_1588 PF04172 LrgB-like family AS53_1589 PF03788 LrgA family AS53_1590 PF01156 Inosine-uridine preferring nucleoside hydrolase AS53_16 PF00005 ABC transporter AS53_16 PF00664 ABC transporter transmembrane region AS53_160 PF00388 Phosphatidylinositol-specific phospholipase C, X domain AS53_1608 PF04860 Phage portal protein AS53_161 PF00082 Subtilase family AS53_1613 PF02899 Phage integrase, N-terminal SAM-like domain AS53_1613 PF00589 Phage integrase family AS53_1614 PF00113 Enolase, C-terminal TIM barrel domain AS53_1614 PF03952 Enolase, N-terminal domain AS53_1615 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AS53_1615 PF01676 Metalloenzyme superfamily AS53_1616 PF00121 Triosephosphate isomerase AS53_1617 PF00162 Phosphoglycerate kinase AS53_1618 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS53_1618 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AS53_1619 PF04198 Putative sugar-binding domain AS53_162 PF07486 Cell Wall Hydrolase AS53_1621 PF04552 Sigma-54, DNA binding domain AS53_1621 PF04963 Sigma-54 factor, core binding domain AS53_1621 PF00309 Sigma-54 factor, Activator interacting domain (AID) AS53_1625 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS53_1626 PF07451 Stage V sporulation protein AD (SpoVAD) AS53_1627 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS53_1629 PF04239 Protein of unknown function (DUF421) AS53_163 PF03275 UDP-galactopyranose mutase AS53_1630 PF00574 Clp protease AS53_1631 PF00381 PTS HPr component phosphorylation site AS53_1632 PF02650 WhiA C-terminal HTH domain AS53_1632 PF14527 WhiA LAGLIDADG-like domain AS53_1632 PF10298 WhiA N-terminal LAGLIDADG-like domain AS53_1633 PF01933 Uncharacterised protein family UPF0052 AS53_1634 PF03668 P-loop ATPase protein family AS53_1635 PF00293 NUDIX domain AS53_1637 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_1639 PF14602 Hexapeptide repeat of succinyl-transferase AS53_164 PF00884 Sulfatase AS53_1640 PF13419 Haloacid dehalogenase-like hydrolase AS53_1641 PF01790 Prolipoprotein diacylglyceryl transferase AS53_1642 PF02603 HPr Serine kinase N terminus AS53_1642 PF07475 HPr Serine kinase C-terminal domain AS53_1643 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AS53_1645 PF17755 UvrA DNA-binding domain AS53_1645 PF17760 UvrA interaction domain AS53_1645 PF00005 ABC transporter AS53_1646 PF00271 Helicase conserved C-terminal domain AS53_1646 PF04851 Type III restriction enzyme, res subunit AS53_1646 PF02151 UvrB/uvrC motif AS53_1646 PF12344 Ultra-violet resistance protein B AS53_1646 PF17757 UvrB interaction domain AS53_1647 PF01385 Probable transposase AS53_1647 PF07282 Putative transposase DNA-binding domain AS53_1647 PF12323 Helix-turn-helix domain AS53_1650 PF13411 MerR HTH family regulatory protein AS53_1650 PF07739 TipAS antibiotic-recognition domain AS53_1654 PF03601 Conserved hypothetical protein 698 AS53_1655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_1655 PF03466 LysR substrate binding domain AS53_1656 PF00376 MerR family regulatory protein AS53_1656 PF09278 MerR, DNA binding AS53_1657 PF03358 NADPH-dependent FMN reductase AS53_1659 PF01906 Putative heavy-metal-binding AS53_1660 PF00005 ABC transporter AS53_1660 PF00664 ABC transporter transmembrane region AS53_1661 PF17820 PDZ domain AS53_1662 PF17820 PDZ domain AS53_1662 PF01471 Putative peptidoglycan binding domain AS53_1662 PF03572 Peptidase family S41 AS53_1663 PF18075 FtsX extracellular domain AS53_1663 PF02687 FtsX-like permease family AS53_1664 PF00005 ABC transporter AS53_1665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS53_1666 PF00472 RF-1 domain AS53_1666 PF03462 PCRF domain AS53_1667 PF07517 SecA DEAD-like domain AS53_1667 PF07516 SecA Wing and Scaffold domain AS53_1667 PF02810 SEC-C motif AS53_1667 PF01043 SecA preprotein cross-linking domain AS53_1668 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AS53_1668 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AS53_1669 PF00313 'Cold-shock' DNA-binding domain AS53_1671 PF00271 Helicase conserved C-terminal domain AS53_1671 PF04851 Type III restriction enzyme, res subunit AS53_1672 PF00877 NlpC/P60 family AS53_1672 PF01476 LysM domain AS53_1673 PF01638 HxlR-like helix-turn-helix AS53_1674 PF02645 Uncharacterised protein, DegV family COG1307 AS53_1675 PF01205 Uncharacterized protein family UPF0029 AS53_1675 PF09186 Domain of unknown function (DUF1949) AS53_1676 PF03816 Cell envelope-related transcriptional attenuator domain AS53_1677 PF02350 UDP-N-acetylglucosamine 2-epimerase AS53_1678 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS53_1678 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS53_1678 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS53_1679 PF00953 Glycosyl transferase family 4 AS53_168 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AS53_1681 PF00158 Sigma-54 interaction domain AS53_1681 PF00874 PRD domain AS53_1681 PF03610 PTS system fructose IIA component AS53_1683 PF02417 Chromate transporter AS53_1684 PF04794 YdjC-like protein AS53_1685 PF02056 Family 4 glycosyl hydrolase AS53_1685 PF11975 Family 4 glycosyl hydrolase C-terminal domain AS53_1686 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS53_1687 PF02378 Phosphotransferase system, EIIC AS53_1688 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS53_169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_169 PF00512 His Kinase A (phospho-acceptor) domain AS53_1690 PF02675 S-adenosylmethionine decarboxylase AS53_1691 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS53_1692 PF02378 Phosphotransferase system, EIIC AS53_1693 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS53_1694 PF00375 Sodium:dicarboxylate symporter family AS53_1696 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_1698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_1698 PF03466 LysR substrate binding domain AS53_17 PF03672 Uncharacterised protein family (UPF0154) AS53_170 PF00486 Transcriptional regulatory protein, C terminal AS53_170 PF00072 Response regulator receiver domain AS53_1702 PF01654 Cytochrome bd terminal oxidase subunit I AS53_1703 PF02322 Cytochrome bd terminal oxidase subunit II AS53_1704 PF02040 Arsenical pump membrane protein AS53_1705 PF01964 Radical SAM ThiC family AS53_1705 PF13667 ThiC-associated domain AS53_1706 PF02652 L-lactate permease AS53_1708 PF09988 Uncharacterized metal-binding protein (DUF2227) AS53_1710 PF00884 Sulfatase AS53_1711 PF01063 Amino-transferase class IV AS53_1713 PF00877 NlpC/P60 family AS53_1713 PF01476 LysM domain AS53_1714 PF01773 Na+ dependent nucleoside transporter N-terminus AS53_1714 PF07662 Na+ dependent nucleoside transporter C-terminus AS53_1718 PF02028 BCCT, betaine/carnitine/choline family transporter AS53_1719 PF06725 3D domain AS53_1719 PF01476 LysM domain AS53_1724 PF04434 SWIM zinc finger AS53_1725 PF00176 SNF2 family N-terminal domain AS53_1725 PF00271 Helicase conserved C-terminal domain AS53_1725 PF12419 SNF2 Helicase protein AS53_173 PF00005 ABC transporter AS53_1731 PF04545 Sigma-70, region 4 AS53_1731 PF04542 Sigma-70 region 2 AS53_1732 PF04893 Yip1 domain AS53_1733 PF02687 FtsX-like permease family AS53_1733 PF12704 MacB-like periplasmic core domain AS53_1734 PF00005 ABC transporter AS53_1738 PF07690 Major Facilitator Superfamily AS53_174 PF01119 DNA mismatch repair protein, C-terminal domain AS53_174 PF08676 MutL C terminal dimerisation domain AS53_1741 PF00512 His Kinase A (phospho-acceptor) domain AS53_1741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1741 PF16736 Single Cache-like AS53_1741 PF00989 PAS fold AS53_1742 PF00486 Transcriptional regulatory protein, C terminal AS53_1742 PF00072 Response regulator receiver domain AS53_1743 PF16363 GDP-mannose 4,6 dehydratase AS53_1744 PF03816 Cell envelope-related transcriptional attenuator domain AS53_1745 PF07977 FabA-like domain AS53_1746 PF02350 UDP-N-acetylglucosamine 2-epimerase AS53_1749 PF01061 ABC-2 type transporter AS53_175 PF05188 MutS domain II AS53_175 PF05192 MutS domain III AS53_175 PF00488 MutS domain V AS53_175 PF01624 MutS domain I AS53_175 PF05190 MutS family domain IV AS53_1750 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS53_1750 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS53_1750 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS53_1758 PF12116 Stage III sporulation protein D AS53_176 PF10628 Outer spore coat protein E (CotE) AS53_1760 PF01551 Peptidase family M23 AS53_1762 PF00005 ABC transporter AS53_1763 PF04397 LytTr DNA-binding domain AS53_1763 PF00072 Response regulator receiver domain AS53_1764 PF00005 ABC transporter AS53_1765 PF08486 Stage II sporulation protein AS53_1766 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS53_1768 PF06612 Protein of unknown function (DUF1146) AS53_1769 PF00361 Proton-conducting membrane transporter AS53_177 PF06133 Control of competence regulator ComK, YlbF/YmcA AS53_1770 PF00361 Proton-conducting membrane transporter AS53_1771 PF00361 Proton-conducting membrane transporter AS53_1771 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AS53_1771 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AS53_1772 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AS53_1773 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AS53_1775 PF00146 NADH dehydrogenase AS53_1776 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AS53_1777 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AS53_1778 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AS53_1779 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AS53_178 PF00919 Uncharacterized protein family UPF0004 AS53_178 PF04055 Radical SAM superfamily AS53_178 PF01938 TRAM domain AS53_1780 PF00990 Diguanylate cyclase, GGDEF domain AS53_1780 PF03707 Bacterial signalling protein N terminal repeat AS53_1780 PF00563 EAL domain AS53_1783 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AS53_1783 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AS53_1784 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS53_1784 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS53_1785 PF00231 ATP synthase AS53_1786 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS53_1786 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS53_1786 PF00306 ATP synthase alpha/beta chain, C terminal domain AS53_1787 PF00213 ATP synthase delta (OSCP) subunit AS53_1788 PF00430 ATP synthase B/B' CF(0) AS53_1789 PF00137 ATP synthase subunit C AS53_179 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS53_1790 PF00119 ATP synthase A chain AS53_1791 PF03899 ATP synthase I chain AS53_1794 PF00464 Serine hydroxymethyltransferase AS53_1795 PF04260 Protein of unknown function (DUF436) AS53_1796 PF02502 Ribose/Galactose Isomerase AS53_1797 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS53_1798 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS53_1799 PF07681 DoxX AS53_18 PF10747 Sporulation inhibitor of replication protein SirA AS53_180 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AS53_180 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AS53_180 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AS53_1800 PF01613 Flavin reductase like domain AS53_1802 PF02659 Putative manganese efflux pump AS53_1803 PF01300 Telomere recombination AS53_1803 PF03481 Putative GTP-binding controlling metal-binding AS53_1805 PF09551 Stage II sporulation protein R (spore_II_R) AS53_1806 PF17827 PrmC N-terminal domain AS53_1806 PF13847 Methyltransferase domain AS53_1807 PF00472 RF-1 domain AS53_1807 PF03462 PCRF domain AS53_1808 PF00265 Thymidine kinase AS53_1809 PF01197 Ribosomal protein L31 AS53_181 PF01244 Membrane dipeptidase (Peptidase family M19) AS53_1810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS53_1810 PF07498 Rho termination factor, N-terminal domain AS53_1810 PF07497 Rho termination factor, RNA-binding domain AS53_1811 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AS53_1812 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS53_1813 PF01116 Fructose-bisphosphate aldolase class-II AS53_1814 PF00072 Response regulator receiver domain AS53_1815 PF10740 Domain of unknown function (DUF2529) AS53_1816 PF00117 Glutamine amidotransferase class-I AS53_1816 PF06418 CTP synthase N-terminus AS53_1817 PF05066 HB1, ASXL, restriction endonuclease HTH domain AS53_1819 PF02770 Acyl-CoA dehydrogenase, middle domain AS53_1819 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS53_1819 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS53_182 PF04232 Stage V sporulation protein S (SpoVS) AS53_1820 PF02770 Acyl-CoA dehydrogenase, middle domain AS53_1820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS53_1820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS53_1821 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AS53_1821 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AS53_1822 PF02803 Thiolase, C-terminal domain AS53_1822 PF00108 Thiolase, N-terminal domain AS53_1823 PF02754 Cysteine-rich domain AS53_1823 PF13183 4Fe-4S dicluster domain AS53_1824 PF13091 PLD-like domain AS53_1825 PF03851 UV-endonuclease UvdE AS53_1826 PF00563 EAL domain AS53_1826 PF00990 Diguanylate cyclase, GGDEF domain AS53_1826 PF03707 Bacterial signalling protein N terminal repeat AS53_183 PF13277 YmdB-like protein AS53_1830 PF00072 Response regulator receiver domain AS53_1830 PF00196 Bacterial regulatory proteins, luxR family AS53_1831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1831 PF07730 Histidine kinase AS53_1833 PF00005 ABC transporter AS53_1834 PF00557 Metallopeptidase family M24 AS53_1837 PF01473 Putative cell wall binding repeat AS53_1837 PF02324 Glycosyl hydrolase family 70 AS53_1838 PF04389 Peptidase family M28 AS53_1838 PF02225 PA domain AS53_184 PF12072 Domain of unknown function (DUF3552) AS53_184 PF00013 KH domain AS53_184 PF01966 HD domain AS53_1842 PF04542 Sigma-70 region 2 AS53_1842 PF08281 Sigma-70, region 4 AS53_1843 PF05746 DALR anticodon binding domain AS53_1843 PF03485 Arginyl tRNA synthetase N terminal domain AS53_1843 PF00750 tRNA synthetases class I (R) AS53_1844 PF09148 Domain of unknown function (DUF1934) AS53_1845 PF17676 LD-carboxypeptidase C-terminal domain AS53_1845 PF02016 LD-carboxypeptidase N-terminal domain AS53_1848 PF00491 Arginase family AS53_1849 PF17284 Spermidine synthase tetramerisation domain AS53_185 PF00154 recA bacterial DNA recombination protein AS53_1850 PF07690 Major Facilitator Superfamily AS53_1851 PF13411 MerR HTH family regulatory protein AS53_1852 PF03009 Glycerophosphoryl diester phosphodiesterase family AS53_1853 PF00905 Penicillin binding protein transpeptidase domain AS53_1853 PF00912 Transglycosylase AS53_1854 PF08741 YwhD family AS53_1855 PF02163 Peptidase family M50 AS53_1856 PF01361 Tautomerase enzyme AS53_1857 PF01966 HD domain AS53_1858 PF01497 Periplasmic binding protein AS53_1859 PF00005 ABC transporter AS53_186 PF00154 recA bacterial DNA recombination protein AS53_1860 PF01032 FecCD transport family AS53_1861 PF01032 FecCD transport family AS53_1862 PF01032 FecCD transport family AS53_1863 PF07293 Protein of unknown function (DUF1450) AS53_1866 PF03099 Biotin/lipoate A/B protein ligase family AS53_1867 PF01515 Phosphate acetyl/butaryl transferase AS53_1869 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_1869 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_187 PF00994 Probable molybdopterin binding domain AS53_187 PF18146 Damage-inducible protein CinA KH domain AS53_187 PF02464 Competence-damaged protein AS53_1870 PF07486 Cell Wall Hydrolase AS53_1871 PF09671 Spore coat protein (Spore_GerQ) AS53_1872 PF04241 Protein of unknown function (DUF423) AS53_1874 PF07885 Ion channel AS53_1874 PF02254 TrkA-N domain AS53_1875 PF00860 Permease family AS53_1877 PF12823 Domain of unknown function (DUF3817) AS53_1878 PF03167 Uracil DNA glycosylase superfamily AS53_1879 PF12679 ABC-2 family transporter protein AS53_188 PF01066 CDP-alcohol phosphatidyltransferase AS53_1880 PF00005 ABC transporter AS53_1881 PF13472 GDSL-like Lipase/Acylhydrolase family AS53_1882 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS53_1882 PF00356 Bacterial regulatory proteins, lacI family AS53_1884 PF03447 Homoserine dehydrogenase, NAD binding domain AS53_1884 PF00742 Homoserine dehydrogenase AS53_1884 PF01842 ACT domain AS53_1885 PF04204 Homoserine O-succinyltransferase AS53_1886 PF01053 Cys/Met metabolism PLP-dependent enzyme AS53_1888 PF13419 Haloacid dehalogenase-like hydrolase AS53_1889 PF00027 Cyclic nucleotide-binding domain AS53_189 PF13464 Domain of unknown function (DUF4115) AS53_1890 PF02525 Flavodoxin-like fold AS53_1891 PF00072 Response regulator receiver domain AS53_1891 PF00196 Bacterial regulatory proteins, luxR family AS53_1892 PF13185 GAF domain AS53_1892 PF07730 Histidine kinase AS53_1893 PF13185 GAF domain AS53_1893 PF07730 Histidine kinase AS53_1894 PF08543 Phosphomethylpyrimidine kinase AS53_1895 PF00990 Diguanylate cyclase, GGDEF domain AS53_1895 PF07694 5TMR of 5TMR-LYT AS53_1896 PF04328 Selenoprotein, putative AS53_1897 PF02554 Carbon starvation protein CstA AS53_1897 PF13722 5TM C-terminal transporter carbon starvation CstA AS53_1898 PF04397 LytTr DNA-binding domain AS53_1898 PF00072 Response regulator receiver domain AS53_1899 PF07690 Major Facilitator Superfamily AS53_19 PF02780 Transketolase, C-terminal domain AS53_19 PF00456 Transketolase, thiamine diphosphate binding domain AS53_19 PF02779 Transketolase, pyrimidine binding domain AS53_190 PF11868 Protein of unknown function (DUF3388) AS53_1900 PF03808 Glycosyl transferase WecB/TagA/CpsF family AS53_1903 PF03458 UPF0126 domain AS53_1904 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_1907 PF03061 Thioesterase superfamily AS53_1909 PF00535 Glycosyl transferase family 2 AS53_191 PF11588 Protein of unknown function (DUF3243) AS53_1910 PF12848 ABC transporter AS53_1910 PF00005 ABC transporter AS53_1915 PF00535 Glycosyl transferase family 2 AS53_1916 PF00440 Bacterial regulatory proteins, tetR family AS53_1917 PF00873 AcrB/AcrD/AcrF family AS53_1918 PF01641 SelR domain AS53_1918 PF01625 Peptide methionine sulfoxide reductase AS53_1919 PF01594 AI-2E family transporter AS53_1920 PF04172 LrgB-like family AS53_1921 PF03788 LrgA family AS53_1922 PF00072 Response regulator receiver domain AS53_1922 PF04397 LytTr DNA-binding domain AS53_1923 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1923 PF06580 Histidine kinase AS53_1923 PF13492 GAF domain AS53_1923 PF07694 5TMR of 5TMR-LYT AS53_1924 PF07690 Major Facilitator Superfamily AS53_1925 PF02028 BCCT, betaine/carnitine/choline family transporter AS53_1926 PF02898 Nitric oxide synthase, oxygenase domain AS53_1927 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS53_1927 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS53_1929 PF02293 AmiS/UreI family transporter AS53_193 PF00675 Insulinase (Peptidase family M16) AS53_193 PF05193 Peptidase M16 inactive domain AS53_1931 PF16363 GDP-mannose 4,6 dehydratase AS53_1932 PF03006 Haemolysin-III related AS53_1934 PF00271 Helicase conserved C-terminal domain AS53_1934 PF00270 DEAD/DEAH box helicase AS53_1934 PF03880 DbpA RNA binding domain AS53_1936 PF00478 IMP dehydrogenase / GMP reductase domain AS53_194 PF05193 Peptidase M16 inactive domain AS53_1940 PF02590 Predicted SPOUT methyltransferase AS53_1942 PF13180 PDZ domain AS53_1943 PF00753 Metallo-beta-lactamase superfamily AS53_1944 PF09648 YycH protein AS53_1945 PF07435 YycH protein AS53_1946 PF13426 PAS domain AS53_1946 PF00512 His Kinase A (phospho-acceptor) domain AS53_1946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1946 PF00672 HAMP domain AS53_1947 PF00072 Response regulator receiver domain AS53_1947 PF00486 Transcriptional regulatory protein, C terminal AS53_1952 PF00709 Adenylosuccinate synthetase AS53_1953 PF03796 DnaB-like helicase C terminal domain AS53_1953 PF00772 DnaB-like helicase N terminal domain AS53_1954 PF01281 Ribosomal protein L9, N-terminal domain AS53_1954 PF03948 Ribosomal protein L9, C-terminal domain AS53_1955 PF02272 DHHA1 domain AS53_1955 PF01368 DHH family AS53_1956 PF09991 Predicted membrane protein (DUF2232) AS53_1957 PF01084 Ribosomal protein S18 AS53_1958 PF00436 Single-strand binding protein family AS53_1959 PF01250 Ribosomal protein S6 AS53_1960 PF06071 Protein of unknown function (DUF933) AS53_1960 PF01926 50S ribosome-binding GTPase AS53_1961 PF06107 Bacterial protein of unknown function (DUF951) AS53_1962 PF00924 Mechanosensitive ion channel AS53_1963 PF06866 Protein of unknown function (DUF1256) AS53_1964 PF02195 ParB-like nuclease domain AS53_1964 PF17762 HTH domain found in ParB protein AS53_1965 PF13614 AAA domain AS53_1966 PF17762 HTH domain found in ParB protein AS53_1966 PF02195 ParB-like nuclease domain AS53_1967 PF02527 rRNA small subunit methyltransferase G AS53_1968 PF13932 GidA associated domain AS53_1968 PF01134 Glucose inhibited division protein A AS53_1969 PF10396 GTP-binding protein TrmE N-terminus AS53_1969 PF12631 MnmE helical domain AS53_1969 PF01926 50S ribosome-binding GTPase AS53_1970 PF14804 Jag N-terminus AS53_1970 PF01424 R3H domain AS53_1971 PF02096 60Kd inner membrane protein AS53_1972 PF00825 Ribonuclease P AS53_1973 PF00468 Ribosomal protein L34 AS53_1974 PF08299 Bacterial dnaA protein helix-turn-helix AS53_1974 PF11638 DnaA N-terminal domain AS53_1974 PF00308 Bacterial dnaA protein AS53_1975 PF02767 DNA polymerase III beta subunit, central domain AS53_1975 PF02768 DNA polymerase III beta subunit, C-terminal domain AS53_1975 PF00712 DNA polymerase III beta subunit, N-terminal domain AS53_1977 PF02463 RecF/RecN/SMC N terminal domain AS53_1978 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_1978 PF01751 Toprim domain AS53_1978 PF00204 DNA gyrase B AS53_1978 PF00986 DNA gyrase B subunit, carboxyl terminus AS53_1979 PF03989 DNA gyrase C-terminal domain, beta-propeller AS53_1979 PF00521 DNA gyrase/topoisomerase IV, subunit A AS53_1984 PF14175 YaaC-like Protein AS53_1985 PF00478 IMP dehydrogenase / GMP reductase domain AS53_1985 PF00571 CBS domain AS53_1986 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_1986 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_1987 PF01680 SOR/SNZ family AS53_1988 PF01174 SNO glutamine amidotransferase family AS53_1989 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS53_1989 PF02403 Seryl-tRNA synthetase N-terminal domain AS53_1992 PF01712 Deoxynucleoside kinase AS53_1993 PF01712 Deoxynucleoside kinase AS53_1994 PF00857 Isochorismatase family AS53_1995 PF14437 MafB19-like deaminase AS53_1996 PF12169 DNA polymerase III subunits gamma and tau domain III AS53_1997 PF02575 YbaB/EbfC DNA-binding family AS53_1998 PF13662 Toprim domain AS53_1998 PF02132 RecR protein AS53_1999 PF10704 Protein of unknown function (DUF2508) AS53_2 PF07301 Protein of unknown function (DUF1453) AS53_20 PF07282 Putative transposase DNA-binding domain AS53_20 PF12323 Helix-turn-helix domain AS53_20 PF01385 Probable transposase AS53_200 PF07702 UTRA domain AS53_200 PF00392 Bacterial regulatory proteins, gntR family AS53_2000 PF07441 SigmaK-factor processing regulatory protein BofA AS53_2008 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AS53_2008 PF01276 Orn/Lys/Arg decarboxylase, major domain AS53_2009 PF02223 Thymidylate kinase AS53_201 PF01580 FtsK/SpoIIIE family AS53_201 PF17854 FtsK alpha domain AS53_201 PF09397 Ftsk gamma domain AS53_2010 PF09115 DNA polymerase III, delta subunit, C terminal AS53_2011 PF04468 PSP1 C-terminal conserved region AS53_2012 PF06156 Initiation control protein YabA AS53_2013 PF05175 Methyltransferase small domain AS53_2014 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS53_2015 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS53_2015 PF18277 AbrB C-terminal domain AS53_2016 PF09334 tRNA synthetases class I (M) AS53_2016 PF01588 Putative tRNA binding domain AS53_2016 PF08264 Anticodon-binding domain of tRNA AS53_2017 PF01026 TatD related DNase AS53_2018 PF01026 TatD related DNase AS53_2019 PF13331 Domain of unknown function (DUF4093) AS53_2019 PF13662 Toprim domain AS53_202 PF14035 YlzJ-like protein AS53_2020 PF00398 Ribosomal RNA adenine dimethylase AS53_2021 PF05582 YabG peptidase U57 AS53_2022 PF06257 Biofilm formation stimulator VEG AS53_2023 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS53_2024 PF00288 GHMP kinases N terminal domain AS53_2024 PF08544 GHMP kinases C terminal AS53_2025 PF09182 Bacterial purine repressor, N-terminal AS53_2025 PF00156 Phosphoribosyl transferase domain AS53_2026 PF01042 Endoribonuclease L-PSP AS53_2027 PF04026 SpoVG AS53_2028 PF00132 Bacterial transferase hexapeptide (six repeats) AS53_2028 PF00483 Nucleotidyl transferase AS53_2029 PF14572 Phosphoribosyl synthetase-associated domain AS53_2029 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AS53_203 PF00574 Clp protease AS53_2030 PF01195 Peptidyl-tRNA hydrolase AS53_2032 PF00271 Helicase conserved C-terminal domain AS53_2032 PF03461 TRCF domain AS53_2032 PF02559 CarD-like/TRCF domain AS53_2032 PF00270 DEAD/DEAH box helicase AS53_2032 PF17757 UvrB interaction domain AS53_2033 PF15714 Stage V sporulation protein T C-terminal, transcription factor AS53_2033 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS53_2034 PF01943 Polysaccharide biosynthesis protein AS53_2034 PF14667 Polysaccharide biosynthesis C-terminal domain AS53_2035 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS53_2035 PF03819 MazG nucleotide pyrophosphohydrolase domain AS53_2036 PF01479 S4 domain AS53_2037 PF07873 YabP family AS53_2038 PF09578 Spore cortex protein YabQ (Spore_YabQ) AS53_204 PF00753 Metallo-beta-lactamase superfamily AS53_204 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS53_204 PF17770 Ribonuclease J C-terminal domain AS53_2040 PF00575 S1 RNA binding domain AS53_2043 PF07228 Stage II sporulation protein E (SpoIIE) AS53_2044 PF07228 Stage II sporulation protein E (SpoIIE) AS53_2045 PF09179 TilS substrate binding domain AS53_2045 PF01171 PP-loop family AS53_2045 PF11734 TilS substrate C-terminal domain AS53_2047 PF00004 ATPase family associated with various cellular activities (AAA) AS53_2047 PF01434 Peptidase family M41 AS53_2047 PF17862 AAA+ lid domain AS53_2047 PF06480 FtsH Extracellular AS53_2048 PF03309 Type III pantothenate kinase AS53_2049 PF01430 Hsp33 protein AS53_205 PF00701 Dihydrodipicolinate synthetase family AS53_2050 PF00291 Pyridoxal-phosphate dependent enzyme AS53_2051 PF04715 Anthranilate synthase component I, N terminal region AS53_2051 PF00425 chorismate binding enzyme AS53_2052 PF00117 Glutamine amidotransferase class-I AS53_2053 PF01063 Amino-transferase class IV AS53_2054 PF00809 Pterin binding enzyme AS53_2055 PF02152 Dihydroneopterin aldolase AS53_2056 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AS53_2057 PF01381 Helix-turn-helix AS53_2058 PF01207 Dihydrouridine synthase (Dus) AS53_2059 PF00152 tRNA synthetases class II (D, K and N) AS53_2059 PF01336 OB-fold nucleic acid binding domain AS53_206 PF13840 ACT domain AS53_206 PF00696 Amino acid kinase family AS53_2063 PF05848 CtsR N-terminal HTH domain AS53_2063 PF17727 CtsR C-terminal dimerization domain AS53_2064 PF02151 UvrB/uvrC motif AS53_2065 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AS53_2066 PF07724 AAA domain (Cdc48 subfamily) AS53_2066 PF02861 Clp amino terminal domain, pathogenicity island component AS53_2066 PF10431 C-terminal, D2-small domain, of ClpB protein AS53_2066 PF00004 ATPase family associated with various cellular activities (AAA) AS53_2066 PF17871 AAA lid domain AS53_2067 PF18073 Rubredoxin metal binding domain AS53_2068 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS53_2068 PF10635 DisA bacterial checkpoint controller linker region AS53_207 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS53_207 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS53_2070 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AS53_2071 PF02542 YgbB family AS53_2072 PF00749 tRNA synthetases class I (E and Q), catalytic domain AS53_2073 PF00132 Bacterial transferase hexapeptide (six repeats) AS53_2073 PF06426 Serine acetyltransferase, N-terminal AS53_2074 PF09190 DALR domain AS53_2074 PF01406 tRNA synthetases class I (C) catalytic domain AS53_2075 PF00636 Ribonuclease III domain AS53_2076 PF08032 RNA 2'-O ribose methyltransferase substrate binding AS53_2076 PF00588 SpoU rRNA Methylase family AS53_2077 PF05991 YacP-like NYN domain AS53_2078 PF04542 Sigma-70 region 2 AS53_2078 PF08281 Sigma-70, region 4 AS53_2079 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AS53_208 PF02441 Flavoprotein AS53_2080 PF02357 Transcription termination factor nusG AS53_2080 PF00467 KOW motif AS53_2081 PF03946 Ribosomal protein L11, N-terminal domain AS53_2081 PF00298 Ribosomal protein L11, RNA binding domain AS53_2082 PF00687 Ribosomal protein L1p/L10e family AS53_2083 PF00466 Ribosomal protein L10 AS53_2084 PF00542 Ribosomal protein L7/L12 C-terminal domain AS53_2084 PF16320 Ribosomal protein L7/L12 dimerisation domain AS53_2085 PF05175 Methyltransferase small domain AS53_2086 PF04563 RNA polymerase beta subunit AS53_2086 PF04561 RNA polymerase Rpb2, domain 2 AS53_2086 PF04565 RNA polymerase Rpb2, domain 3 AS53_2086 PF00562 RNA polymerase Rpb2, domain 6 AS53_2086 PF04560 RNA polymerase Rpb2, domain 7 AS53_2086 PF10385 RNA polymerase beta subunit external 1 domain AS53_2087 PF05000 RNA polymerase Rpb1, domain 4 AS53_2087 PF04997 RNA polymerase Rpb1, domain 1 AS53_2087 PF04983 RNA polymerase Rpb1, domain 3 AS53_2087 PF04998 RNA polymerase Rpb1, domain 5 AS53_2087 PF00623 RNA polymerase Rpb1, domain 2 AS53_2088 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AS53_209 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS53_209 PF16924 Dipicolinate synthase subunit A N-terminal domain AS53_2091 PF00177 Ribosomal protein S7p/S5e AS53_2092 PF00009 Elongation factor Tu GTP binding domain AS53_2092 PF03764 Elongation factor G, domain IV AS53_2092 PF14492 Elongation Factor G, domain II AS53_2092 PF03144 Elongation factor Tu domain 2 AS53_2092 PF00679 Elongation factor G C-terminus AS53_2093 PF03143 Elongation factor Tu C-terminal domain AS53_2093 PF00009 Elongation factor Tu GTP binding domain AS53_2093 PF03144 Elongation factor Tu domain 2 AS53_2094 PF00338 Ribosomal protein S10p/S20e AS53_2095 PF00297 Ribosomal protein L3 AS53_2096 PF00573 Ribosomal protein L4/L1 family AS53_2097 PF00276 Ribosomal protein L23 AS53_2098 PF00181 Ribosomal Proteins L2, RNA binding domain AS53_2098 PF03947 Ribosomal Proteins L2, C-terminal domain AS53_2099 PF00203 Ribosomal protein S19 AS53_21 PF00528 Binding-protein-dependent transport system inner membrane component AS53_210 PF05239 PRC-barrel domain AS53_2100 PF00237 Ribosomal protein L22p/L17e AS53_2101 PF00189 Ribosomal protein S3, C-terminal domain AS53_2101 PF07650 KH domain AS53_2102 PF00252 Ribosomal protein L16p/L10e AS53_2103 PF00831 Ribosomal L29 protein AS53_2104 PF00366 Ribosomal protein S17 AS53_2105 PF00238 Ribosomal protein L14p/L23e AS53_2106 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AS53_2106 PF00467 KOW motif AS53_2107 PF00673 ribosomal L5P family C-terminus AS53_2107 PF00281 Ribosomal protein L5 AS53_2108 PF00253 Ribosomal protein S14p/S29e AS53_2109 PF00410 Ribosomal protein S8 AS53_211 PF00675 Insulinase (Peptidase family M16) AS53_211 PF05193 Peptidase M16 inactive domain AS53_2110 PF00347 Ribosomal protein L6 AS53_2111 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AS53_2112 PF00333 Ribosomal protein S5, N-terminal domain AS53_2112 PF03719 Ribosomal protein S5, C-terminal domain AS53_2113 PF00327 Ribosomal protein L30p/L7e AS53_2114 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AS53_2115 PF00344 SecY translocase AS53_2116 PF05191 Adenylate kinase, active site lid AS53_2117 PF00557 Metallopeptidase family M24 AS53_2118 PF01176 Translation initiation factor 1A / IF-1 AS53_2119 PF00444 Ribosomal protein L36 AS53_212 PF01522 Polysaccharide deacetylase AS53_2120 PF00416 Ribosomal protein S13/S18 AS53_2121 PF00411 Ribosomal protein S11 AS53_2122 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AS53_2122 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AS53_2122 PF01000 RNA polymerase Rpb3/RpoA insert domain AS53_2123 PF01196 Ribosomal protein L17 AS53_2124 PF00005 ABC transporter AS53_2125 PF00005 ABC transporter AS53_2126 PF02361 Cobalt transport protein AS53_2127 PF01416 tRNA pseudouridine synthase AS53_2128 PF00572 Ribosomal protein L13 AS53_2129 PF00380 Ribosomal protein S9/S16 AS53_213 PF00575 S1 RNA binding domain AS53_213 PF03725 3' exoribonuclease family, domain 2 AS53_213 PF01138 3' exoribonuclease family, domain 1 AS53_213 PF00013 KH domain AS53_213 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AS53_2131 PF01520 N-acetylmuramoyl-L-alanine amidase AS53_2132 PF10609 NUBPL iron-transfer P-loop NTPase AS53_2133 PF17898 Spore germination GerD central core domain AS53_2134 PF14089 KinB-signalling pathway activation in sporulation AS53_2135 PF01522 Polysaccharide deacetylase AS53_214 PF00312 Ribosomal protein S15 AS53_215 PF01687 Riboflavin kinase AS53_215 PF06574 FAD synthetase AS53_2150 PF02595 Glycerate kinase family AS53_2151 PF02595 Glycerate kinase family AS53_2152 PF00491 Arginase family AS53_2153 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS53_2154 PF07949 YbbR-like protein AS53_2155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AS53_2155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AS53_2155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AS53_2155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AS53_2156 PF01380 SIS domain AS53_2157 PF00561 alpha/beta hydrolase fold AS53_2158 PF00392 Bacterial regulatory proteins, gntR family AS53_2158 PF07729 FCD domain AS53_2159 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_2159 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_216 PF01509 TruB family pseudouridylate synthase (N terminal domain) AS53_216 PF16198 tRNA pseudouridylate synthase B C-terminal domain AS53_2160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_2160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_2161 PF02447 GntP family permease AS53_2162 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS53_2162 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS53_2163 PF00326 Prolyl oligopeptidase family AS53_2163 PF07676 WD40-like Beta Propeller Repeat AS53_217 PF02033 Ribosome-binding factor A AS53_2172 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2173 PF00005 ABC transporter AS53_2173 PF09383 NIL domain AS53_2174 PF03180 NLPA lipoprotein AS53_2177 PF01565 FAD binding domain AS53_2178 PF07690 Major Facilitator Superfamily AS53_218 PF04456 Protein of unknown function (DUF503) AS53_2180 PF07690 Major Facilitator Superfamily AS53_2183 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2184 PF12911 N-terminal TM domain of oligopeptide transport permease C AS53_2184 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2185 PF00005 ABC transporter AS53_2186 PF00005 ABC transporter AS53_2186 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2187 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_2189 PF12833 Helix-turn-helix domain AS53_219 PF00009 Elongation factor Tu GTP binding domain AS53_219 PF11987 Translation-initiation factor 2 AS53_219 PF04760 Translation initiation factor IF-2, N-terminal region AS53_2192 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_2193 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_2194 PF00248 Aldo/keto reductase family AS53_2195 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS53_2195 PF03807 NADP oxidoreductase coenzyme F420-dependent AS53_2196 PF04973 Nicotinamide mononucleotide transporter AS53_2197 PF06800 Sugar transport protein AS53_2198 PF00528 Binding-protein-dependent transport system inner membrane component AS53_22 PF00528 Binding-protein-dependent transport system inner membrane component AS53_220 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AS53_2201 PF12727 PBP superfamily domain AS53_2201 PF12728 Helix-turn-helix domain AS53_2204 PF03466 LysR substrate binding domain AS53_2204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_2205 PF00892 EamA-like transporter family AS53_2206 PF14142 YrzO-like protein AS53_2208 PF01553 Acyltransferase AS53_221 PF04296 Protein of unknown function (DUF448) AS53_2210 PF00356 Bacterial regulatory proteins, lacI family AS53_2210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS53_2212 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_2212 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_2215 PF01026 TatD related DNase AS53_2216 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) AS53_222 PF08529 NusA N-terminal domain AS53_222 PF00575 S1 RNA binding domain AS53_222 PF13184 NusA-like KH domain AS53_2220 PF16326 ABC transporter C-terminal domain AS53_2220 PF00005 ABC transporter AS53_2220 PF12848 ABC transporter AS53_2223 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_2224 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2226 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2226 PF00005 ABC transporter AS53_2227 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2227 PF00005 ABC transporter AS53_223 PF02576 RimP N-terminal domain AS53_223 PF17384 RimP C-terminal SH3 domain AS53_2234 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_2235 PF01557 Fumarylacetoacetate (FAA) hydrolase family AS53_2237 PF07690 Major Facilitator Superfamily AS53_2238 PF01820 D-ala D-ala ligase N-terminus AS53_2238 PF07478 D-ala D-ala ligase C-terminus AS53_2239 PF01820 D-ala D-ala ligase N-terminus AS53_2239 PF07478 D-ala D-ala ligase C-terminus AS53_224 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS53_224 PF02811 PHP domain AS53_224 PF14579 Helix-hairpin-helix motif AS53_224 PF00929 Exonuclease AS53_224 PF14480 DNA polymerase III polC-type N-terminus I AS53_224 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS53_224 PF11490 DNA polymerase III polC-type N-terminus II AS53_2240 PF08245 Mur ligase middle domain AS53_2240 PF02875 Mur ligase family, glutamate ligase domain AS53_2240 PF01225 Mur ligase family, catalytic domain AS53_2241 PF00270 DEAD/DEAH box helicase AS53_2241 PF00271 Helicase conserved C-terminal domain AS53_2242 PF01694 Rhomboid family AS53_2243 PF03851 UV-endonuclease UvdE AS53_2244 PF01648 4'-phosphopantetheinyl transferase superfamily AS53_2246 PF01168 Alanine racemase, N-terminal domain AS53_2246 PF00842 Alanine racemase, C-terminal domain AS53_2247 PF01402 Ribbon-helix-helix protein, copG family AS53_2248 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AS53_2249 PF16921 Tex protein YqgF-like domain AS53_2249 PF09371 Tex-like protein N-terminal domain AS53_2249 PF17674 HHH domain AS53_2249 PF00575 S1 RNA binding domain AS53_225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS53_225 PF04073 Aminoacyl-tRNA editing domain AS53_225 PF03129 Anticodon binding domain AS53_2250 PF10263 SprT-like family AS53_2250 PF17283 SprT-like zinc ribbon domain AS53_226 PF17820 PDZ domain AS53_226 PF02163 Peptidase family M50 AS53_2268 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AS53_2269 PF00814 Glycoprotease family AS53_227 PF13288 DXP reductoisomerase C-terminal domain AS53_227 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AS53_227 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AS53_2270 PF00583 Acetyltransferase (GNAT) family AS53_2271 PF00814 Glycoprotease family AS53_2272 PF00005 ABC transporter AS53_2272 PF16326 ABC transporter C-terminal domain AS53_2272 PF12848 ABC transporter AS53_2273 PF02629 CoA binding domain AS53_2273 PF06971 Putative DNA-binding protein N-terminus AS53_2275 PF02517 CPBP intramembrane metalloprotease AS53_2276 PF00166 Chaperonin 10 Kd subunit AS53_2277 PF00118 TCP-1/cpn60 chaperonin family AS53_2278 PF00958 GMP synthase C terminal domain AS53_2278 PF02540 NAD synthase AS53_2278 PF00117 Glutamine amidotransferase class-I AS53_2279 PF00860 Permease family AS53_2280 PF00072 Response regulator receiver domain AS53_2280 PF00486 Transcriptional regulatory protein, C terminal AS53_2281 PF00989 PAS fold AS53_2281 PF16736 Single Cache-like AS53_2281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_2281 PF00512 His Kinase A (phospho-acceptor) domain AS53_2286 PF14307 Glycosyltransferase WbsX AS53_2286 PF05045 Rhamnan synthesis protein F AS53_2289 PF08241 Methyltransferase domain AS53_229 PF01255 Putative undecaprenyl diphosphate synthase AS53_2295 PF00535 Glycosyl transferase family 2 AS53_23 PF00005 ABC transporter AS53_230 PF01765 Ribosome recycling factor AS53_2300 PF02673 Bacitracin resistance protein BacA AS53_2302 PF00005 ABC transporter AS53_2303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_2303 PF00512 His Kinase A (phospho-acceptor) domain AS53_2304 PF00072 Response regulator receiver domain AS53_2304 PF00486 Transcriptional regulatory protein, C terminal AS53_2309 PF00731 AIR carboxylase AS53_231 PF00696 Amino acid kinase family AS53_2310 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AS53_2310 PF02222 ATP-grasp domain AS53_2311 PF00206 Lyase AS53_2311 PF10397 Adenylosuccinate lyase C-terminus AS53_2312 PF01259 SAICAR synthetase AS53_2313 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AS53_2315 PF02769 AIR synthase related protein, C-terminal domain AS53_2315 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AS53_2315 PF00586 AIR synthase related protein, N-terminal domain AS53_2316 PF00156 Phosphoribosyl transferase domain AS53_2317 PF02769 AIR synthase related protein, C-terminal domain AS53_2317 PF00586 AIR synthase related protein, N-terminal domain AS53_2318 PF00551 Formyl transferase AS53_2319 PF02142 MGS-like domain AS53_2319 PF01808 AICARFT/IMPCHase bienzyme AS53_232 PF00889 Elongation factor TS AS53_2320 PF02844 Phosphoribosylglycinamide synthetase, N domain AS53_2320 PF02843 Phosphoribosylglycinamide synthetase, C domain AS53_2320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AS53_2324 PF01884 PcrB family AS53_2325 PF13361 UvrD-like helicase C-terminal domain AS53_2325 PF00580 UvrD/REP helicase N-terminal domain AS53_2326 PF12826 Helix-hairpin-helix motif AS53_2326 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AS53_2326 PF03120 NAD-dependent DNA ligase OB-fold domain AS53_2326 PF00533 BRCA1 C Terminus (BRCT) domain AS53_2326 PF01653 NAD-dependent DNA ligase adenylation domain AS53_2327 PF07537 CamS sex pheromone cAM373 precursor AS53_2328 PF01925 Sulfite exporter TauE/SafE AS53_2329 PF00171 Aldehyde dehydrogenase family AS53_233 PF00318 Ribosomal protein S2 AS53_2331 PF00857 Isochorismatase family AS53_2332 PF09383 NIL domain AS53_2332 PF00005 ABC transporter AS53_2333 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2334 PF03180 NLPA lipoprotein AS53_2337 PF17886 HSP20-like domain found in ArsA AS53_2337 PF02374 Anion-transporting ATPase AS53_2338 PF17886 HSP20-like domain found in ArsA AS53_2338 PF02374 Anion-transporting ATPase AS53_2339 PF01047 MarR family AS53_234 PF08222 CodY helix-turn-helix domain AS53_234 PF06018 CodY GAF-like domain AS53_2341 PF02686 Glu-tRNAGln amidotransferase C subunit AS53_2342 PF01425 Amidase AS53_2343 PF02934 GatB/GatE catalytic domain AS53_2343 PF02637 GatB domain AS53_2344 PF00781 Diacylglycerol kinase catalytic domain AS53_2345 PF13419 Haloacid dehalogenase-like hydrolase AS53_2346 PF00202 Aminotransferase class-III AS53_2347 PF00158 Sigma-54 interaction domain AS53_2348 PF00171 Aldehyde dehydrogenase family AS53_2349 PF00893 Small Multidrug Resistance protein AS53_235 PF10431 C-terminal, D2-small domain, of ClpB protein AS53_235 PF07724 AAA domain (Cdc48 subfamily) AS53_235 PF00004 ATPase family associated with various cellular activities (AAA) AS53_2350 PF02073 Thermophilic metalloprotease (M29) AS53_2353 PF07670 Nucleoside recognition AS53_2353 PF07662 Na+ dependent nucleoside transporter C-terminus AS53_2353 PF01773 Na+ dependent nucleoside transporter N-terminus AS53_2354 PF01938 TRAM domain AS53_2354 PF02475 Met-10+ like-protein AS53_2354 PF05958 tRNA (Uracil-5-)-methyltransferase AS53_2355 PF01207 Dihydrouridine synthase (Dus) AS53_2357 PF07308 Protein of unknown function (DUF1456) AS53_236 PF00227 Proteasome subunit AS53_2360 PF13378 Enolase C-terminal domain-like AS53_2360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS53_2363 PF07687 Peptidase dimerisation domain AS53_2363 PF01546 Peptidase family M20/M25/M40 AS53_2365 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_2365 PF13192 Thioredoxin domain AS53_2366 PF00578 AhpC/TSA family AS53_2367 PF01636 Phosphotransferase enzyme family AS53_2369 PF00596 Class II Aldolase and Adducin N-terminal domain AS53_237 PF00589 Phage integrase family AS53_237 PF02899 Phage integrase, N-terminal SAM-like domain AS53_2370 PF01032 FecCD transport family AS53_2371 PF01032 FecCD transport family AS53_2372 PF01497 Periplasmic binding protein AS53_2373 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_2375 PF12728 Helix-turn-helix domain AS53_238 PF01134 Glucose inhibited division protein A AS53_2381 PF13188 PAS domain AS53_2381 PF00989 PAS fold AS53_2381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_2381 PF13426 PAS domain AS53_2381 PF00512 His Kinase A (phospho-acceptor) domain AS53_2385 PF10127 RNA repair pathway DNA polymerase beta family AS53_2386 PF07690 Major Facilitator Superfamily AS53_2387 PF01266 FAD dependent oxidoreductase AS53_2387 PF00355 Rieske [2Fe-2S] domain AS53_2389 PF00528 Binding-protein-dependent transport system inner membrane component AS53_239 PF01131 DNA topoisomerase AS53_239 PF01396 Topoisomerase DNA binding C4 zinc finger AS53_239 PF01751 Toprim domain AS53_2390 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS53_2391 PF00005 ABC transporter AS53_2392 PF00672 HAMP domain AS53_2392 PF12729 Four helix bundle sensory module for signal transduction AS53_2392 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_2393 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_2393 PF12729 Four helix bundle sensory module for signal transduction AS53_2393 PF00672 HAMP domain AS53_2394 PF00128 Alpha amylase, catalytic domain AS53_2394 PF16657 Maltogenic Amylase, C-terminal domain AS53_2395 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS53_2395 PF00367 phosphotransferase system, EIIB AS53_2395 PF02378 Phosphotransferase system, EIIC AS53_2396 PF03372 Endonuclease/Exonuclease/phosphatase family AS53_2397 PF01061 ABC-2 type transporter AS53_2398 PF01751 Toprim domain AS53_2398 PF01131 DNA topoisomerase AS53_2399 PF02110 Hydroxyethylthiazole kinase family AS53_2400 PF02581 Thiamine monophosphate synthase AS53_2401 PF03605 Anaerobic c4-dicarboxylate membrane transporter AS53_2402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_2402 PF00672 HAMP domain AS53_2403 PF01910 Thiamine-binding protein AS53_2404 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2406 PF00005 ABC transporter AS53_2407 PF00005 ABC transporter AS53_2407 PF12848 ABC transporter AS53_2408 PF00704 Glycosyl hydrolases family 18 AS53_2408 PF00041 Fibronectin type III domain AS53_241 PF00549 CoA-ligase AS53_241 PF02629 CoA binding domain AS53_2412 PF00440 Bacterial regulatory proteins, tetR family AS53_2412 PF08360 QacR-like protein, C-terminal region AS53_2416 PF11700 Vacuole effluxer Atg22 like AS53_2419 PF09180 Prolyl-tRNA synthetase, C-terminal AS53_2419 PF03129 Anticodon binding domain AS53_2419 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS53_242 PF00549 CoA-ligase AS53_242 PF08442 ATP-grasp domain AS53_2421 PF00480 ROK family AS53_2422 PF02342 TerD domain AS53_2423 PF02342 TerD domain AS53_2424 PF02342 TerD domain AS53_2425 PF03741 Integral membrane protein TerC family AS53_2426 PF14266 Putative component of 'biosynthetic module' AS53_2427 PF05816 Toxic anion resistance protein (TelA) AS53_2428 PF00690 Cation transporter/ATPase, N-terminus AS53_2428 PF00689 Cation transporting ATPase, C-terminus AS53_2429 PF06569 Protein of unknown function (DUF1128) AS53_243 PF01351 Ribonuclease HII AS53_2430 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS53_2432 PF03631 Virulence factor BrkB AS53_2434 PF00892 EamA-like transporter family AS53_2436 PF10502 Signal peptidase, peptidase S26 AS53_2437 PF10502 Signal peptidase, peptidase S26 AS53_2439 PF09335 SNARE associated Golgi protein AS53_244 PF01926 50S ribosome-binding GTPase AS53_2442 PF16242 Pyridoxamine 5'-phosphate oxidase like AS53_2443 PF01699 Sodium/calcium exchanger protein AS53_2444 PF14167 YfkD-like protein AS53_2445 PF04055 Radical SAM superfamily AS53_2445 PF08756 YfkB-like domain AS53_2447 PF05683 Fumarase C-terminus AS53_2447 PF05681 Fumarate hydratase (Fumerase) AS53_2448 PF01522 Polysaccharide deacetylase AS53_245 PF10502 Signal peptidase, peptidase S26 AS53_2450 PF00730 HhH-GPD superfamily base excision DNA repair protein AS53_2451 PF01938 TRAM domain AS53_2451 PF05958 tRNA (Uracil-5-)-methyltransferase AS53_2452 PF00589 Phage integrase family AS53_2452 PF14659 Phage integrase, N-terminal SAM-like domain AS53_2456 PF01381 Helix-turn-helix AS53_246 PF01245 Ribosomal protein L19 AS53_2463 PF01695 IstB-like ATP binding protein AS53_2463 PF07319 Primosomal protein DnaI N-terminus AS53_247 PF01746 tRNA (Guanine-1)-methyltransferase AS53_248 PF01782 RimM N-terminal domain AS53_248 PF05239 PRC-barrel domain AS53_250 PF00886 Ribosomal protein S16 AS53_251 PF02881 SRP54-type protein, helical bundle domain AS53_251 PF02978 Signal peptide binding domain AS53_251 PF00448 SRP54-type protein, GTPase domain AS53_2510 PF01416 tRNA pseudouridine synthase AS53_2512 PF02954 Bacterial regulatory protein, Fis family AS53_2512 PF13426 PAS domain AS53_2512 PF00158 Sigma-54 interaction domain AS53_2514 PF00324 Amino acid permease AS53_2515 PF07687 Peptidase dimerisation domain AS53_2515 PF01546 Peptidase family M20/M25/M40 AS53_252 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AS53_2520 PF04960 Glutaminase AS53_2521 PF00367 phosphotransferase system, EIIB AS53_2521 PF02378 Phosphotransferase system, EIIC AS53_2522 PF00144 Beta-lactamase AS53_2525 PF00535 Glycosyl transferase family 2 AS53_2526 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS53_2526 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS53_2526 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS53_2527 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS53_2527 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS53_2527 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS53_2528 PF02911 Formyl transferase, C-terminal domain AS53_2528 PF01370 NAD dependent epimerase/dehydratase family AS53_2528 PF00551 Formyl transferase AS53_2529 PF00535 Glycosyl transferase family 2 AS53_253 PF00448 SRP54-type protein, GTPase domain AS53_253 PF02881 SRP54-type protein, helical bundle domain AS53_2530 PF02901 Pyruvate formate lyase-like AS53_2530 PF01228 Glycine radical AS53_2531 PF04055 Radical SAM superfamily AS53_2532 PF04101 Glycosyltransferase family 28 C-terminal domain AS53_2532 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AS53_2535 PF01979 Amidohydrolase family AS53_2536 PF01370 NAD dependent epimerase/dehydratase family AS53_2536 PF08338 Domain of unknown function (DUF1731) AS53_2537 PF02631 RecX family AS53_254 PF02463 RecF/RecN/SMC N terminal domain AS53_254 PF06470 SMC proteins Flexible Hinge Domain AS53_2540 PF08176 Small acid-soluble spore protein K family AS53_2541 PF14043 WVELL protein AS53_2542 PF04307 LexA-binding, inner membrane-associated putative hydrolase AS53_2543 PF14815 NUDIX domain AS53_2543 PF00730 HhH-GPD superfamily base excision DNA repair protein AS53_2545 PF04259 Small, acid-soluble spore protein, gamma-type AS53_2546 PF14182 YgaB-like protein AS53_2547 PF04167 Protein of unknown function (DUF402) AS53_2548 PF00005 ABC transporter AS53_2548 PF00664 ABC transporter transmembrane region AS53_2549 PF06081 Aromatic acid exporter family member 1 AS53_255 PF14622 Ribonuclease-III-like AS53_255 PF00035 Double-stranded RNA binding motif AS53_2550 PF04898 Glutamate synthase central domain AS53_2550 PF01493 GXGXG motif AS53_2550 PF00310 Glutamine amidotransferases class-II AS53_2550 PF01645 Conserved region in glutamate synthase AS53_2551 PF00202 Aminotransferase class-III AS53_2552 PF00005 ABC transporter AS53_2555 PF07885 Ion channel AS53_2556 PF00578 AhpC/TSA family AS53_2557 PF01475 Ferric uptake regulator family AS53_2558 PF11023 Zinc-ribbon containing domain AS53_256 PF00550 Phosphopantetheine attachment site AS53_2575 PF05698 Bacterial trigger factor protein (TF) C-terminus AS53_2575 PF05697 Bacterial trigger factor protein (TF) AS53_258 PF00698 Acyl transferase domain AS53_2580 PF01709 Transcriptional regulator AS53_2581 PF00293 NUDIX domain AS53_2581 PF13344 Haloacid dehalogenase-like hydrolase AS53_2582 PF00905 Penicillin binding protein transpeptidase domain AS53_2582 PF00912 Transglycosylase AS53_2583 PF13462 Thioredoxin AS53_2585 PF08331 Domain of unknown function (DUF1730) AS53_2586 PF12671 Putative amidase domain AS53_2587 PF00588 SpoU rRNA Methylase family AS53_2588 PF00990 Diguanylate cyclase, GGDEF domain AS53_2588 PF00563 EAL domain AS53_2588 PF03707 Bacterial signalling protein N terminal repeat AS53_259 PF02504 Fatty acid synthesis protein AS53_2590 PF08298 PrkA AAA domain AS53_2590 PF06798 PrkA serine protein kinase C-terminal domain AS53_2591 PF04285 Protein of unknown function (DUF444) AS53_2594 PF02028 BCCT, betaine/carnitine/choline family transporter AS53_2595 PF01752 Collagenase AS53_2595 PF08453 Peptidase family M9 N-terminal AS53_2595 PF18496 Collagenase G catalytic helper subdomain AS53_2597 PF01145 SPFH domain / Band 7 family AS53_2597 PF15975 Flotillin AS53_2598 PF00672 HAMP domain AS53_2598 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_2598 PF02743 Cache domain AS53_2599 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS53_2599 PF00989 PAS fold AS53_2599 PF17203 Single cache domain 3 AS53_2599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_26 PF00149 Calcineurin-like phosphoesterase AS53_26 PF02872 5'-nucleotidase, C-terminal domain AS53_260 PF03061 Thioesterase superfamily AS53_2600 PF00072 Response regulator receiver domain AS53_2600 PF08279 HTH domain AS53_2600 PF12431 Transcriptional regulator AS53_2601 PF03600 Citrate transporter AS53_2605 PF04309 Glycerol-3-phosphate responsive antiterminator AS53_2606 PF17912 MalK OB fold domain AS53_2606 PF00005 ABC transporter AS53_2607 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2608 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2609 PF13416 Bacterial extracellular solute-binding protein AS53_261 PF00271 Helicase conserved C-terminal domain AS53_261 PF17191 RecG wedge domain AS53_261 PF00270 DEAD/DEAH box helicase AS53_2610 PF00149 Calcineurin-like phosphoesterase AS53_2611 PF00072 Response regulator receiver domain AS53_2611 PF00486 Transcriptional regulatory protein, C terminal AS53_2612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_2612 PF00512 His Kinase A (phospho-acceptor) domain AS53_2614 PF13529 Peptidase_C39 like family AS53_2615 PF02743 Cache domain AS53_2615 PF00672 HAMP domain AS53_2615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_2619 PF00072 Response regulator receiver domain AS53_262 PF02734 DAK2 domain AS53_262 PF13684 Dihydroxyacetone kinase family AS53_2620 PF03390 2-hydroxycarboxylate transporter family AS53_2621 PF03949 Malic enzyme, NAD binding domain AS53_2621 PF00390 Malic enzyme, N-terminal domain AS53_2623 PF00892 EamA-like transporter family AS53_2624 PF00392 Bacterial regulatory proteins, gntR family AS53_2624 PF00155 Aminotransferase class I and II AS53_2628 PF00486 Transcriptional regulatory protein, C terminal AS53_2628 PF00072 Response regulator receiver domain AS53_263 PF03780 Asp23 family, cell envelope-related function AS53_2630 PF00583 Acetyltransferase (GNAT) family AS53_2630 PF13508 Acetyltransferase (GNAT) domain AS53_2631 PF02634 FdhD/NarQ family AS53_2632 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AS53_2632 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS53_2632 PF00037 4Fe-4S binding domain AS53_2632 PF00384 Molybdopterin oxidoreductase AS53_2632 PF01568 Molydopterin dinucleotide binding domain AS53_2636 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AS53_2636 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS53_2637 PF13520 Amino acid permease AS53_2638 PF01022 Bacterial regulatory protein, arsR family AS53_264 PF00830 Ribosomal L28 family AS53_2641 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AS53_2641 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AS53_2641 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AS53_2644 PF01447 Thermolysin metallopeptidase, catalytic domain AS53_2644 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS53_2644 PF07504 Fungalysin/Thermolysin Propeptide Motif AS53_2644 PF03413 Peptidase propeptide and YPEB domain AS53_2648 PF04294 VanW like protein AS53_2649 PF03816 Cell envelope-related transcriptional attenuator domain AS53_265 PF04263 Thiamin pyrophosphokinase, catalytic domain AS53_265 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AS53_2650 PF01773 Na+ dependent nucleoside transporter N-terminus AS53_2650 PF07662 Na+ dependent nucleoside transporter C-terminus AS53_2651 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_2652 PF01595 Cyclin M transmembrane N-terminal domain AS53_2652 PF00571 CBS domain AS53_2652 PF03471 Transporter associated domain AS53_2653 PF10415 Fumarase C C-terminus AS53_2653 PF00206 Lyase AS53_2654 PF02652 L-lactate permease AS53_2655 PF01022 Bacterial regulatory protein, arsR family AS53_2656 PF08141 Small acid-soluble spore protein H family AS53_2657 PF00854 POT family AS53_2658 PF01497 Periplasmic binding protein AS53_2659 PF01032 FecCD transport family AS53_266 PF00834 Ribulose-phosphate 3 epimerase family AS53_2660 PF01032 FecCD transport family AS53_2661 PF00005 ABC transporter AS53_2662 PF08241 Methyltransferase domain AS53_2663 PF00155 Aminotransferase class I and II AS53_2664 PF01370 NAD dependent epimerase/dehydratase family AS53_2665 PF00293 NUDIX domain AS53_2665 PF13344 Haloacid dehalogenase-like hydrolase AS53_2666 PF00092 von Willebrand factor type A domain AS53_2667 PF07728 AAA domain (dynein-related subfamily) AS53_2668 PF13396 Phospholipase_D-nuclease N-terminal AS53_2668 PF13091 PLD-like domain AS53_267 PF16745 RsgA N-terminal domain AS53_267 PF03193 RsgA GTPase AS53_2671 PF00990 Diguanylate cyclase, GGDEF domain AS53_2671 PF03707 Bacterial signalling protein N terminal repeat AS53_2671 PF00563 EAL domain AS53_2672 PF13520 Amino acid permease AS53_2673 PF07702 UTRA domain AS53_2673 PF00392 Bacterial regulatory proteins, gntR family AS53_2674 PF00367 phosphotransferase system, EIIB AS53_2674 PF02378 Phosphotransferase system, EIIC AS53_2675 PF00128 Alpha amylase, catalytic domain AS53_2675 PF16657 Maltogenic Amylase, C-terminal domain AS53_2678 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_268 PF03793 PASTA domain AS53_268 PF00069 Protein kinase domain AS53_2680 PF01636 Phosphotransferase enzyme family AS53_2681 PF01235 Sodium:alanine symporter family AS53_2682 PF00005 ABC transporter AS53_2683 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS53_2684 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2685 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2686 PF00324 Amino acid permease AS53_2691 PF08279 HTH domain AS53_2691 PF13280 WYL domain AS53_2692 PF01872 RibD C-terminal domain AS53_2693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_2693 PF00512 His Kinase A (phospho-acceptor) domain AS53_2693 PF00989 PAS fold AS53_2693 PF18698 Histidine kinase sensor domain AS53_2693 PF00672 HAMP domain AS53_2694 PF00072 Response regulator receiver domain AS53_2694 PF00486 Transcriptional regulatory protein, C terminal AS53_2696 PF00916 Sulfate permease family AS53_2696 PF01740 STAS domain AS53_2697 PF00582 Universal stress protein family AS53_2699 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_27 PF05979 Bacterial protein of unknown function (DUF896) AS53_270 PF04055 Radical SAM superfamily AS53_2700 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2701 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2702 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2702 PF00005 ABC transporter AS53_2703 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2703 PF00005 ABC transporter AS53_2704 PF07690 Major Facilitator Superfamily AS53_2705 PF01047 MarR family AS53_2706 PF07690 Major Facilitator Superfamily AS53_2707 PF07690 Major Facilitator Superfamily AS53_2708 PF00356 Bacterial regulatory proteins, lacI family AS53_2709 PF00294 pfkB family carbohydrate kinase AS53_271 PF01189 16S rRNA methyltransferase RsmB/F AS53_271 PF01029 NusB family AS53_2710 PF05025 RbsD / FucU transport protein family AS53_2711 PF00005 ABC transporter AS53_2712 PF02653 Branched-chain amino acid transport system / permease component AS53_2713 PF13407 Periplasmic binding protein domain AS53_2714 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS53_2715 PF05547 Immune inhibitor A peptidase M6 AS53_2718 PF08240 Alcohol dehydrogenase GroES-like domain AS53_2718 PF00107 Zinc-binding dehydrogenase AS53_272 PF00551 Formyl transferase AS53_272 PF02911 Formyl transferase, C-terminal domain AS53_2720 PF00882 Zinc dependent phospholipase C AS53_2721 PF03372 Endonuclease/Exonuclease/phosphatase family AS53_2726 PF02673 Bacitracin resistance protein BacA AS53_2727 PF00672 HAMP domain AS53_2727 PF02743 Cache domain AS53_2727 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_2728 PF06725 3D domain AS53_2728 PF01476 LysM domain AS53_2729 PF01381 Helix-turn-helix AS53_273 PF01327 Polypeptide deformylase AS53_2731 PF04203 Sortase domain AS53_2732 PF00854 POT family AS53_2733 PF05525 Branched-chain amino acid transport protein AS53_2736 PF00324 Amino acid permease AS53_2737 PF00860 Permease family AS53_274 PF17764 3′ DNA-binding domain (3′BD) AS53_274 PF04851 Type III restriction enzyme, res subunit AS53_274 PF00271 Helicase conserved C-terminal domain AS53_274 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AS53_274 PF18074 Primosomal protein N C-terminal domain AS53_2742 PF02254 TrkA-N domain AS53_2742 PF02080 TrkA-C domain AS53_2742 PF00999 Sodium/hydrogen exchanger family AS53_2744 PF00510 Cytochrome c oxidase subunit III AS53_2745 PF00115 Cytochrome C and Quinol oxidase polypeptide I AS53_2746 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AS53_2747 PF13529 Peptidase_C39 like family AS53_2748 PF01546 Peptidase family M20/M25/M40 AS53_2748 PF07687 Peptidase dimerisation domain AS53_2749 PF11755 Protein of unknown function (DUF3311) AS53_275 PF04127 DNA / pantothenate metabolism flavoprotein AS53_275 PF02441 Flavoprotein AS53_2750 PF00474 Sodium:solute symporter family AS53_2751 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_2752 PF03845 Spore germination protein AS53_2753 PF05504 Spore germination B3/ GerAC like, C-terminal AS53_2754 PF07670 Nucleoside recognition AS53_2754 PF02421 Ferrous iron transport protein B AS53_2754 PF17910 FeoB cytosolic helical domain AS53_2754 PF07664 Ferrous iron transport protein B C terminus AS53_2755 PF07670 Nucleoside recognition AS53_2755 PF02421 Ferrous iron transport protein B AS53_2755 PF17910 FeoB cytosolic helical domain AS53_2755 PF07664 Ferrous iron transport protein B C terminus AS53_2756 PF04023 FeoA domain AS53_2756 PF07664 Ferrous iron transport protein B C terminus AS53_2756 PF17910 FeoB cytosolic helical domain AS53_2756 PF02421 Ferrous iron transport protein B AS53_2756 PF07670 Nucleoside recognition AS53_2757 PF12849 PBP superfamily domain AS53_2758 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2759 PF00528 Binding-protein-dependent transport system inner membrane component AS53_276 PF01192 RNA polymerase Rpb6 AS53_2761 PF00873 AcrB/AcrD/AcrF family AS53_277 PF00625 Guanylate kinase AS53_2775 PF00571 CBS domain AS53_2778 PF08239 Bacterial SH3 domain AS53_2778 PF00246 Zinc carboxypeptidase AS53_2779 PF03070 TENA/THI-4/PQQC family AS53_278 PF04025 Domain of unknown function (DUF370) AS53_2780 PF00005 ABC transporter AS53_2781 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2782 PF09084 NMT1/THI5 like AS53_2783 PF02581 Thiamine monophosphate synthase AS53_2784 PF01266 FAD dependent oxidoreductase AS53_2785 PF02597 ThiS family AS53_2786 PF05690 Thiazole biosynthesis protein ThiG AS53_2787 PF00899 ThiF family AS53_2788 PF08543 Phosphomethylpyrimidine kinase AS53_279 PF03755 YicC-like family, N-terminal region AS53_279 PF08340 Domain of unknown function (DUF1732) AS53_2792 PF03814 Potassium-transporting ATPase A subunit AS53_2794 PF02669 K+-transporting ATPase, c chain AS53_2795 PF02702 Osmosensitive K+ channel His kinase sensor domain AS53_2796 PF07690 Major Facilitator Superfamily AS53_2797 PF01047 MarR family AS53_28 PF00239 Resolvase, N terminal domain AS53_280 PF00690 Cation transporter/ATPase, N-terminus AS53_280 PF00689 Cation transporting ATPase, C-terminus AS53_2800 PF00860 Permease family AS53_2805 PF00294 pfkB family carbohydrate kinase AS53_2806 PF08244 Glycosyl hydrolases family 32 C terminal AS53_2806 PF00251 Glycosyl hydrolases family 32 N-terminal domain AS53_2807 PF02378 Phosphotransferase system, EIIC AS53_2807 PF00367 phosphotransferase system, EIIB AS53_2808 PF00356 Bacterial regulatory proteins, lacI family AS53_2808 PF13407 Periplasmic binding protein domain AS53_2810 PF00085 Thioredoxin AS53_2811 PF02600 Disulfide bond formation protein DsbB AS53_2812 PF14148 YhdB-like protein AS53_2814 PF03845 Spore germination protein AS53_2816 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_2819 PF00881 Nitroreductase family AS53_282 PF01321 Creatinase/Prolidase N-terminal domain AS53_282 PF00557 Metallopeptidase family M24 AS53_2820 PF04293 SpoVR like protein AS53_2825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS53_2825 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_2826 PF02583 Metal-sensitive transcriptional repressor AS53_2827 PF01206 Sulfurtransferase TusA AS53_2827 PF00581 Rhodanese-like domain AS53_2828 PF00753 Metallo-beta-lactamase superfamily AS53_2828 PF00581 Rhodanese-like domain AS53_2829 PF01206 Sulfurtransferase TusA AS53_2831 PF00581 Rhodanese-like domain AS53_2833 PF13686 DsrE/DsrF/DrsH-like family AS53_2834 PF01925 Sulfite exporter TauE/SafE AS53_2836 PF03816 Cell envelope-related transcriptional attenuator domain AS53_2837 PF08240 Alcohol dehydrogenase GroES-like domain AS53_2837 PF00107 Zinc-binding dehydrogenase AS53_2838 PF02690 Na+/Pi-cotransporter AS53_2839 PF07690 Major Facilitator Superfamily AS53_2841 PF05043 Mga helix-turn-helix domain AS53_2841 PF00874 PRD domain AS53_2841 PF08279 HTH domain AS53_2841 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS53_2842 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS53_2843 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS53_2844 PF02378 Phosphotransferase system, EIIC AS53_2847 PF01476 LysM domain AS53_2847 PF06725 3D domain AS53_2848 PF02687 FtsX-like permease family AS53_2848 PF12704 MacB-like periplasmic core domain AS53_2849 PF00005 ABC transporter AS53_2851 PF09529 Integral membrane protein (intg_mem_TP0381) AS53_2854 PF05525 Branched-chain amino acid transport protein AS53_2855 PF05067 Manganese containing catalase AS53_2856 PF12652 CotJB protein AS53_2857 PF11007 Spore coat associated protein JA (CotJA) AS53_2860 PF02735 Ku70/Ku80 beta-barrel domain AS53_2862 PF09335 SNARE associated Golgi protein AS53_2868 PF13520 Amino acid permease AS53_2869 PF00999 Sodium/hydrogen exchanger family AS53_2871 PF01380 SIS domain AS53_2871 PF01418 Helix-turn-helix domain, rpiR family AS53_2872 PF01380 SIS domain AS53_2873 PF02378 Phosphotransferase system, EIIC AS53_2873 PF00367 phosphotransferase system, EIIB AS53_2875 PF07681 DoxX AS53_2878 PF00892 EamA-like transporter family AS53_2879 PF01037 Lrp/AsnC ligand binding domain AS53_288 PF00156 Phosphoribosyl transferase domain AS53_2881 PF00893 Small Multidrug Resistance protein AS53_2882 PF00893 Small Multidrug Resistance protein AS53_2883 PF00440 Bacterial regulatory proteins, tetR family AS53_2883 PF17934 Tetracyclin repressor-like, C-terminal domain AS53_2884 PF07690 Major Facilitator Superfamily AS53_2885 PF01638 HxlR-like helix-turn-helix AS53_2887 PF02525 Flavodoxin-like fold AS53_2888 PF12793 Sugar transport-related sRNA regulator N-term AS53_2888 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_2889 PF07690 Major Facilitator Superfamily AS53_289 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AS53_2891 PF01965 DJ-1/PfpI family AS53_2892 PF06628 Catalase-related immune-responsive AS53_2892 PF00199 Catalase AS53_2892 PF18011 C-terminal domain found in long catalases AS53_2894 PF13520 Amino acid permease AS53_2895 PF01177 Asp/Glu/Hydantoin racemase AS53_2897 PF00171 Aldehyde dehydrogenase family AS53_2898 PF00005 ABC transporter AS53_2898 PF00664 ABC transporter transmembrane region AS53_2899 PF00664 ABC transporter transmembrane region AS53_2899 PF00005 ABC transporter AS53_29 PF00717 Peptidase S24-like AS53_29 PF01726 LexA DNA binding domain AS53_290 PF01180 Dihydroorotate dehydrogenase AS53_2900 PF00005 ABC transporter AS53_2900 PF00664 ABC transporter transmembrane region AS53_2901 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS53_2902 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2903 PF00005 ABC transporter AS53_2904 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS53_2906 PF14398 YheC/D like ATP-grasp AS53_2908 PF04286 Protein of unknown function (DUF445) AS53_2909 PF06133 Control of competence regulator ComK, YlbF/YmcA AS53_291 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AS53_291 PF00175 Oxidoreductase NAD-binding domain AS53_2912 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS53_2912 PF00205 Thiamine pyrophosphate enzyme, central domain AS53_2912 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS53_2913 PF03306 Alpha-acetolactate decarboxylase AS53_2915 PF02245 Methylpurine-DNA glycosylase (MPG) AS53_2918 PF01471 Putative peptidoglycan binding domain AS53_2918 PF01476 LysM domain AS53_2918 PF01510 N-acetylmuramoyl-L-alanine amidase AS53_292 PF02142 MGS-like domain AS53_292 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AS53_292 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS53_2920 PF04055 Radical SAM superfamily AS53_2921 PF00501 AMP-binding enzyme AS53_2921 PF13193 AMP-binding enzyme C-terminal domain AS53_2923 PF01740 STAS domain AS53_2923 PF00916 Sulfate permease family AS53_2927 PF01043 SecA preprotein cross-linking domain AS53_2927 PF07516 SecA Wing and Scaffold domain AS53_2927 PF07517 SecA DEAD-like domain AS53_2928 PF01943 Polysaccharide biosynthesis protein AS53_2928 PF14667 Polysaccharide biosynthesis C-terminal domain AS53_293 PF00117 Glutamine amidotransferase class-I AS53_293 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AS53_2930 PF02368 Bacterial Ig-like domain (group 2) AS53_2930 PF13205 Bacterial Ig-like domain AS53_2930 PF00395 S-layer homology domain AS53_2931 PF00395 S-layer homology domain AS53_2933 PF03062 MBOAT, membrane-bound O-acyltransferase family AS53_2934 PF03062 MBOAT, membrane-bound O-acyltransferase family AS53_2937 PF00378 Enoyl-CoA hydratase/isomerase AS53_294 PF01979 Amidohydrolase family AS53_2940 PF05343 M42 glutamyl aminopeptidase AS53_2941 PF00395 S-layer homology domain AS53_2941 PF01520 N-acetylmuramoyl-L-alanine amidase AS53_2943 PF11121 Protein of unknown function (DUF2639) AS53_2944 PF05544 Proline racemase AS53_2945 PF02423 Ornithine cyclodeaminase/mu-crystallin family AS53_2946 PF18593 CdiI immunity protein AS53_295 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AS53_295 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AS53_2950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_2951 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2952 PF12911 N-terminal TM domain of oligopeptide transport permease C AS53_2952 PF00528 Binding-protein-dependent transport system inner membrane component AS53_2953 PF00005 ABC transporter AS53_2953 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2954 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2954 PF00005 ABC transporter AS53_2955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_2955 PF00005 ABC transporter AS53_2956 PF01541 GIY-YIG catalytic domain AS53_296 PF00860 Permease family AS53_2962 PF00083 Sugar (and other) transporter AS53_2963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_2963 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS53_2964 PF12431 Transcriptional regulator AS53_2964 PF08279 HTH domain AS53_2964 PF00072 Response regulator receiver domain AS53_2965 PF03401 Tripartite tricarboxylate transporter family receptor AS53_2966 PF02342 TerD domain AS53_297 PF00156 Phosphoribosyl transferase domain AS53_2970 PF06445 GyrI-like small molecule binding domain AS53_2970 PF13411 MerR HTH family regulatory protein AS53_2973 PF03796 DnaB-like helicase C terminal domain AS53_2973 PF00772 DnaB-like helicase N terminal domain AS53_2978 PF01925 Sulfite exporter TauE/SafE AS53_298 PF01479 S4 domain AS53_298 PF00849 RNA pseudouridylate synthase AS53_2981 PF07690 Major Facilitator Superfamily AS53_299 PF01252 Signal peptidase (SPase) II AS53_2991 PF00550 Phosphopantetheine attachment site AS53_2991 PF07993 Male sterility protein AS53_2992 PF00440 Bacterial regulatory proteins, tetR family AS53_2992 PF18665 Tetracyclin repressor-like, C-terminal domain AS53_2996 PF01066 CDP-alcohol phosphatidyltransferase AS53_3 PF02683 Cytochrome C biogenesis protein transmembrane region AS53_3000 PF02733 Dak1 domain AS53_3002 PF02733 Dak1 domain AS53_3003 PF02525 Flavodoxin-like fold AS53_3004 PF02082 Transcriptional regulator AS53_3009 PF01966 HD domain AS53_3009 PF00672 HAMP domain AS53_301 PF08264 Anticodon-binding domain of tRNA AS53_301 PF00133 tRNA synthetases class I (I, L, M and V) AS53_301 PF06827 Zinc finger found in FPG and IleRS AS53_3014 PF00395 S-layer homology domain AS53_3018 PF11181 Heat induced stress protein YflT AS53_3019 PF05532 CsbD-like AS53_302 PF05103 DivIVA protein AS53_3022 PF01740 STAS domain AS53_3023 PF13581 Histidine kinase-like ATPase domain AS53_3024 PF04545 Sigma-70, region 4 AS53_3024 PF04542 Sigma-70 region 2 AS53_3024 PF04539 Sigma-70 region 3 AS53_3026 PF07228 Stage II sporulation protein E (SpoIIE) AS53_3026 PF13426 PAS domain AS53_3027 PF01739 CheR methyltransferase, SAM binding domain AS53_3027 PF03705 CheR methyltransferase, all-alpha domain AS53_3028 PF00072 Response regulator receiver domain AS53_3028 PF00512 His Kinase A (phospho-acceptor) domain AS53_3028 PF01627 Hpt domain AS53_3028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3028 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS53_303 PF17774 Putative RNA-binding domain in YlmH AS53_303 PF01479 S4 domain AS53_3033 PF01906 Putative heavy-metal-binding AS53_3035 PF08240 Alcohol dehydrogenase GroES-like domain AS53_3035 PF00107 Zinc-binding dehydrogenase AS53_3036 PF11121 Protein of unknown function (DUF2639) AS53_3039 PF00149 Calcineurin-like phosphoesterase AS53_304 PF02325 YGGT family AS53_3040 PF13514 AAA domain AS53_3041 PF01385 Probable transposase AS53_3041 PF12323 Helix-turn-helix domain AS53_3041 PF07282 Putative transposase DNA-binding domain AS53_3043 PF01966 HD domain AS53_3043 PF01336 OB-fold nucleic acid binding domain AS53_3044 PF00440 Bacterial regulatory proteins, tetR family AS53_3045 PF07690 Major Facilitator Superfamily AS53_3046 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_3049 PF18801 response regulator aspartate phosphatase H, N terminal AS53_305 PF04472 Cell division protein SepF AS53_3051 PF00561 alpha/beta hydrolase fold AS53_3051 PF08386 TAP-like protein AS53_3055 PF04309 Glycerol-3-phosphate responsive antiterminator AS53_3056 PF00230 Major intrinsic protein AS53_3057 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_3057 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_3058 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AS53_3058 PF01266 FAD dependent oxidoreductase AS53_306 PF01168 Alanine racemase, N-terminal domain AS53_3061 PF08281 Sigma-70, region 4 AS53_3061 PF04542 Sigma-70 region 2 AS53_3066 PF07690 Major Facilitator Superfamily AS53_3067 PF07690 Major Facilitator Superfamily AS53_3069 PF13538 UvrD-like helicase C-terminal domain AS53_3074 PF01047 MarR family AS53_3075 PF12732 YtxH-like protein AS53_3076 PF01230 HIT domain AS53_3077 PF00005 ABC transporter AS53_3078 PF05975 Bacterial ABC transporter protein EcsB AS53_3079 PF12787 EcsC protein family AS53_308 PF05239 PRC-barrel domain AS53_3081 PF00440 Bacterial regulatory proteins, tetR family AS53_3081 PF17934 Tetracyclin repressor-like, C-terminal domain AS53_3083 PF03703 Bacterial PH domain AS53_3085 PF03703 Bacterial PH domain AS53_309 PF04542 Sigma-70 region 2 AS53_309 PF04545 Sigma-70, region 4 AS53_309 PF04539 Sigma-70 region 3 AS53_3095 PF03703 Bacterial PH domain AS53_3096 PF03703 Bacterial PH domain AS53_3097 PF03992 Antibiotic biosynthesis monooxygenase AS53_3098 PF00912 Transglycosylase AS53_3098 PF00905 Penicillin binding protein transpeptidase domain AS53_3099 PF01208 Uroporphyrinogen decarboxylase (URO-D) AS53_310 PF04545 Sigma-70, region 4 AS53_310 PF04542 Sigma-70 region 2 AS53_3107 PF03965 Penicillinase repressor AS53_3109 PF00440 Bacterial regulatory proteins, tetR family AS53_3109 PF17932 Tetracyclin repressor-like, C-terminal domain AS53_311 PF03419 Sporulation factor SpoIIGA AS53_3115 PF00356 Bacterial regulatory proteins, lacI family AS53_3116 PF14149 YhfH-like protein AS53_3117 PF12706 Beta-lactamase superfamily domain AS53_3118 PF10437 Bacterial lipoate protein ligase C-terminus AS53_3118 PF03099 Biotin/lipoate A/B protein ligase family AS53_312 PF12327 FtsZ family, C-terminal domain AS53_312 PF00091 Tubulin/FtsZ family, GTPase domain AS53_3120 PF00501 AMP-binding enzyme AS53_3120 PF13193 AMP-binding enzyme C-terminal domain AS53_3122 PF00395 S-layer homology domain AS53_3122 PF01520 N-acetylmuramoyl-L-alanine amidase AS53_3123 PF05593 RHS Repeat AS53_3126 PF05593 RHS Repeat AS53_313 PF02491 SHS2 domain inserted in FTSA AS53_3131 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AS53_3133 PF00149 Calcineurin-like phosphoesterase AS53_3134 PF01966 HD domain AS53_3136 PF04542 Sigma-70 region 2 AS53_3136 PF08281 Sigma-70, region 4 AS53_3137 PF06445 GyrI-like small molecule binding domain AS53_3137 PF12833 Helix-turn-helix domain AS53_314 PF03799 Cell division protein FtsQ AS53_314 PF08478 POTRA domain, FtsQ-type AS53_3140 PF00512 His Kinase A (phospho-acceptor) domain AS53_3140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3141 PF00486 Transcriptional regulatory protein, C terminal AS53_3141 PF00072 Response regulator receiver domain AS53_3146 PF16491 CAAX prenyl protease N-terminal, five membrane helices AS53_3146 PF01435 Peptidase family M48 AS53_3147 PF02743 Cache domain AS53_3147 PF00672 HAMP domain AS53_3147 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_3148 PF00892 EamA-like transporter family AS53_3149 PF00150 Cellulase (glycosyl hydrolase family 5) AS53_3149 PF03424 Carbohydrate binding domain (family 17/28) AS53_3149 PF00395 S-layer homology domain AS53_315 PF01565 FAD binding domain AS53_315 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AS53_3151 PF00395 S-layer homology domain AS53_3152 PF01274 Malate synthase AS53_3153 PF00463 Isocitrate lyase family AS53_3155 PF00313 'Cold-shock' DNA-binding domain AS53_3158 PF06338 ComK protein AS53_3159 PF09335 SNARE associated Golgi protein AS53_316 PF03033 Glycosyltransferase family 28 N-terminal domain AS53_316 PF04101 Glycosyltransferase family 28 C-terminal domain AS53_3160 PF10502 Signal peptidase, peptidase S26 AS53_3161 PF13361 UvrD-like helicase C-terminal domain AS53_3161 PF12705 PD-(D/E)XK nuclease superfamily AS53_3162 PF13361 UvrD-like helicase C-terminal domain AS53_3162 PF00580 UvrD/REP helicase N-terminal domain AS53_3162 PF12705 PD-(D/E)XK nuclease superfamily AS53_3164 PF10676 Spore germination protein gerPA/gerPF AS53_3165 PF10970 Spore germination protein GerPE AS53_3167 PF10737 Spore germination protein GerPC AS53_3168 PF10803 Spore germination GerPB AS53_3169 PF10676 Spore germination protein gerPA/gerPF AS53_317 PF01098 Cell cycle protein AS53_3170 PF01557 Fumarylacetoacetate (FAA) hydrolase family AS53_3172 PF00202 Aminotransferase class-III AS53_3173 PF07457 Protein of unknown function (DUF1516) AS53_3175 PF00733 Asparagine synthase AS53_3175 PF13537 Glutamine amidotransferase domain AS53_3177 PF06628 Catalase-related immune-responsive AS53_3177 PF00199 Catalase AS53_3178 PF00909 Ammonium Transporter Family AS53_3179 PF00128 Alpha amylase, catalytic domain AS53_318 PF02875 Mur ligase family, glutamate ligase domain AS53_318 PF08245 Mur ligase middle domain AS53_3181 PF04461 Protein of unknown function (DUF520) AS53_3182 PF13509 S1 domain AS53_3182 PF17783 CvfB-like winged helix domain AS53_3184 PF00639 PPIC-type PPIASE domain AS53_3186 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_3186 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_3187 PF12758 Protein of unknown function (DUF3813) AS53_319 PF00953 Glycosyl transferase family 4 AS53_319 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AS53_3190 PF14168 YjzC-like protein AS53_3191 PF07724 AAA domain (Cdc48 subfamily) AS53_3191 PF02861 Clp amino terminal domain, pathogenicity island component AS53_3191 PF10431 C-terminal, D2-small domain, of ClpB protein AS53_3191 PF17871 AAA lid domain AS53_3191 PF00004 ATPase family associated with various cellular activities (AAA) AS53_3195 PF10815 ComZ AS53_3196 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS53_3196 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS53_3197 PF00109 Beta-ketoacyl synthase, N-terminal domain AS53_3197 PF02801 Beta-ketoacyl synthase, C-terminal domain AS53_3198 PF10026 Predicted Zn-dependent protease (DUF2268) AS53_3199 PF12227 Protein of unknown function (DUF3603) AS53_32 PF03551 Transcriptional regulator PadR-like family AS53_320 PF02875 Mur ligase family, glutamate ligase domain AS53_320 PF01225 Mur ligase family, catalytic domain AS53_320 PF08245 Mur ligase middle domain AS53_3200 PF00579 tRNA synthetases class I (W and Y) AS53_3202 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_3203 PF00528 Binding-protein-dependent transport system inner membrane component AS53_3204 PF12911 N-terminal TM domain of oligopeptide transport permease C AS53_3204 PF00528 Binding-protein-dependent transport system inner membrane component AS53_3205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_3205 PF00005 ABC transporter AS53_3206 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_3206 PF00005 ABC transporter AS53_3207 PF01554 MatE AS53_3208 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_321 PF03793 PASTA domain AS53_321 PF00905 Penicillin binding protein transpeptidase domain AS53_321 PF03717 Penicillin-binding Protein dimerisation domain AS53_3210 PF03960 ArsC family AS53_3211 PF03741 Integral membrane protein TerC family AS53_3212 PF05389 Negative regulator of genetic competence (MecA) AS53_3213 PF13091 PLD-like domain AS53_3213 PF13396 Phospholipase_D-nuclease N-terminal AS53_3215 PF08439 Oligopeptidase F AS53_3215 PF01432 Peptidase family M3 AS53_3218 PF01152 Bacterial-like globin AS53_3219 PF01928 CYTH domain AS53_3221 PF04607 Region found in RelA / SpoT proteins AS53_3222 PF01513 ATP-NAD kinase AS53_3223 PF00849 RNA pseudouridylate synthase AS53_3226 PF00149 Calcineurin-like phosphoesterase AS53_3227 PF01098 Cell cycle protein AS53_3228 PF01098 Cell cycle protein AS53_3229 PF00535 Glycosyl transferase family 2 AS53_323 PF04977 Septum formation initiator AS53_3230 PF08241 Methyltransferase domain AS53_3231 PF05711 Macrocin-O-methyltransferase (TylF) AS53_3233 PF00535 Glycosyl transferase family 2 AS53_3233 PF13181 Tetratricopeptide repeat AS53_3237 PF00483 Nucleotidyl transferase AS53_3238 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AS53_3239 PF16363 GDP-mannose 4,6 dehydratase AS53_324 PF01795 MraW methylase family AS53_3240 PF04321 RmlD substrate binding domain AS53_3244 PF07098 Protein of unknown function (DUF1360) AS53_3247 PF00580 UvrD/REP helicase N-terminal domain AS53_3247 PF13361 UvrD-like helicase C-terminal domain AS53_3248 PF13673 Acetyltransferase (GNAT) domain AS53_325 PF10079 Bacillithiol biosynthesis BshC AS53_3250 PF00756 Putative esterase AS53_3253 PF02368 Bacterial Ig-like domain (group 2) AS53_3254 PF00474 Sodium:solute symporter family AS53_3256 PF00117 Glutamine amidotransferase class-I AS53_3256 PF02885 Glycosyl transferase family, helical bundle domain AS53_3256 PF00591 Glycosyl transferase family, a/b domain AS53_3257 PF02885 Glycosyl transferase family, helical bundle domain AS53_3257 PF00591 Glycosyl transferase family, a/b domain AS53_3258 PF00218 Indole-3-glycerol phosphate synthase AS53_3259 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AS53_326 PF02558 Ketopantoate reductase PanE/ApbA AS53_326 PF08546 Ketopantoate reductase PanE/ApbA C terminal AS53_3260 PF00291 Pyridoxal-phosphate dependent enzyme AS53_3261 PF00290 Tryptophan synthase alpha chain AS53_3263 PF02652 L-lactate permease AS53_3264 PF10042 Uncharacterized conserved protein (DUF2278) AS53_3268 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_3268 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS53_327 PF00583 Acetyltransferase (GNAT) family AS53_3274 PF00364 Biotin-requiring enzyme AS53_3274 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS53_3274 PF02817 e3 binding domain AS53_3275 PF16870 2-oxoglutarate dehydrogenase C-terminal AS53_3275 PF00676 Dehydrogenase E1 component AS53_3275 PF02779 Transketolase, pyrimidine binding domain AS53_3276 PF01381 Helix-turn-helix AS53_3287 PF13649 Methyltransferase domain AS53_3289 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_3289 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_329 PF01783 Ribosomal L32p protein family AS53_3291 PF12389 Camelysin metallo-endopeptidase AS53_3293 PF12389 Camelysin metallo-endopeptidase AS53_3294 PF08671 Anti-repressor SinI AS53_3294 PF01381 Helix-turn-helix AS53_3295 PF05547 Immune inhibitor A peptidase M6 AS53_3296 PF00171 Aldehyde dehydrogenase family AS53_3297 PF00005 ABC transporter AS53_3297 PF08402 TOBE domain AS53_3298 PF00528 Binding-protein-dependent transport system inner membrane component AS53_3299 PF00528 Binding-protein-dependent transport system inner membrane component AS53_330 PF02620 Large ribosomal RNA subunit accumulation protein YceD AS53_3300 PF13416 Bacterial extracellular solute-binding protein AS53_3302 PF03176 MMPL family AS53_3304 PF01479 S4 domain AS53_3304 PF00849 RNA pseudouridylate synthase AS53_3306 PF00188 Cysteine-rich secretory protein family AS53_3307 PF02754 Cysteine-rich domain AS53_3307 PF13183 4Fe-4S dicluster domain AS53_3308 PF01565 FAD binding domain AS53_3308 PF02913 FAD linked oxidases, C-terminal domain AS53_3309 PF05651 Putative sugar diacid recognition AS53_3309 PF17853 GGDEF-like domain AS53_3309 PF13556 PucR C-terminal helix-turn-helix domain AS53_3311 PF00072 Response regulator receiver domain AS53_3311 PF00486 Transcriptional regulatory protein, C terminal AS53_3312 PF00989 PAS fold AS53_3312 PF00512 His Kinase A (phospho-acceptor) domain AS53_3312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3312 PF00672 HAMP domain AS53_3312 PF18698 Histidine kinase sensor domain AS53_3313 PF07729 FCD domain AS53_3313 PF00392 Bacterial regulatory proteins, gntR family AS53_3314 PF02754 Cysteine-rich domain AS53_3315 PF13183 4Fe-4S dicluster domain AS53_3315 PF11870 Domain of unknown function (DUF3390) AS53_3315 PF02589 LUD domain AS53_3316 PF02589 LUD domain AS53_3317 PF01478 Type IV leader peptidase family AS53_3317 PF06750 Bacterial Peptidase A24 N-terminal domain AS53_3319 PF01226 Formate/nitrite transporter AS53_3320 PF03741 Integral membrane protein TerC family AS53_3321 PF02386 Cation transport protein AS53_3322 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS53_3323 PF01575 MaoC like domain AS53_3328 PF00561 alpha/beta hydrolase fold AS53_3330 PF02386 Cation transport protein AS53_3335 PF00005 ABC transporter AS53_3335 PF08402 TOBE domain AS53_3336 PF00005 ABC transporter AS53_3338 PF00528 Binding-protein-dependent transport system inner membrane component AS53_3339 PF13419 Haloacid dehalogenase-like hydrolase AS53_3340 PF00266 Aminotransferase class-V AS53_3342 PF08220 DeoR-like helix-turn-helix domain AS53_3342 PF00455 DeoR C terminal sensor domain AS53_3346 PF00395 S-layer homology domain AS53_3346 PF01520 N-acetylmuramoyl-L-alanine amidase AS53_3347 PF00596 Class II Aldolase and Adducin N-terminal domain AS53_3348 PF00596 Class II Aldolase and Adducin N-terminal domain AS53_3350 PF04748 Divergent polysaccharide deacetylase AS53_3351 PF09388 Spo0E like sporulation regulatory protein AS53_3352 PF00512 His Kinase A (phospho-acceptor) domain AS53_3352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3352 PF02743 Cache domain AS53_3353 PF01047 MarR family AS53_3355 PF12867 DinB superfamily AS53_3357 PF13426 PAS domain AS53_3357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3357 PF13188 PAS domain AS53_3357 PF00512 His Kinase A (phospho-acceptor) domain AS53_3357 PF00989 PAS fold AS53_3358 PF06508 Queuosine biosynthesis protein QueC AS53_3359 PF01242 6-pyruvoyl tetrahydropterin synthase AS53_3360 PF04055 Radical SAM superfamily AS53_3361 PF14489 QueF-like protein AS53_3362 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AS53_3368 PF07972 NrdI Flavodoxin like AS53_3369 PF02867 Ribonucleotide reductase, barrel domain AS53_3369 PF08343 Ribonucleotide reductase N-terminal AS53_3369 PF00317 Ribonucleotide reductase, all-alpha domain AS53_3371 PF02867 Ribonucleotide reductase, barrel domain AS53_3371 PF00317 Ribonucleotide reductase, all-alpha domain AS53_3371 PF08343 Ribonucleotide reductase N-terminal AS53_3372 PF00268 Ribonucleotide reductase, small chain AS53_3373 PF00392 Bacterial regulatory proteins, gntR family AS53_3374 PF00005 ABC transporter AS53_3376 PF00005 ABC transporter AS53_3380 PF01037 Lrp/AsnC ligand binding domain AS53_3382 PF00857 Isochorismatase family AS53_3384 PF02016 LD-carboxypeptidase N-terminal domain AS53_3384 PF17676 LD-carboxypeptidase C-terminal domain AS53_3385 PF03060 Nitronate monooxygenase AS53_3386 PF04914 DltD protein AS53_3387 PF00550 Phosphopantetheine attachment site AS53_3388 PF03062 MBOAT, membrane-bound O-acyltransferase family AS53_3389 PF13193 AMP-binding enzyme C-terminal domain AS53_3389 PF00501 AMP-binding enzyme AS53_339 PF01510 N-acetylmuramoyl-L-alanine amidase AS53_339 PF12123 N-acetylmuramoyl-l-alanine amidase AS53_3391 PF07687 Peptidase dimerisation domain AS53_3391 PF01546 Peptidase family M20/M25/M40 AS53_3393 PF00258 Flavodoxin AS53_3396 PF01636 Phosphotransferase enzyme family AS53_340 PF05105 Bacteriophage holin family AS53_3400 PF01554 MatE AS53_3401 PF02673 Bacitracin resistance protein BacA AS53_3404 PF01047 MarR family AS53_3406 PF00375 Sodium:dicarboxylate symporter family AS53_3407 PF02386 Cation transport protein AS53_3409 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AS53_3411 PF03698 Uncharacterised protein family (UPF0180) AS53_3414 PF01063 Amino-transferase class IV AS53_3415 PF00205 Thiamine pyrophosphate enzyme, central domain AS53_3415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS53_3415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS53_3416 PF10369 Small subunit of acetolactate synthase AS53_3416 PF01842 ACT domain AS53_3417 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AS53_3417 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AS53_3418 PF00682 HMGL-like AS53_3418 PF08502 LeuA allosteric (dimerisation) domain AS53_3419 PF00180 Isocitrate/isopropylmalate dehydrogenase AS53_3420 PF00330 Aconitase family (aconitate hydratase) AS53_3421 PF00694 Aconitase C-terminal domain AS53_3422 PF13393 Histidyl-tRNA synthetase AS53_3423 PF01634 ATP phosphoribosyltransferase AS53_3424 PF00815 Histidinol dehydrogenase AS53_3425 PF00475 Imidazoleglycerol-phosphate dehydratase AS53_3426 PF00117 Glutamine amidotransferase class-I AS53_3427 PF00977 Histidine biosynthesis protein AS53_3428 PF00977 Histidine biosynthesis protein AS53_3429 PF01502 Phosphoribosyl-AMP cyclohydrolase AS53_3430 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AS53_3431 PF02811 PHP domain AS53_3433 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS53_3433 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS53_3434 PF01066 CDP-alcohol phosphatidyltransferase AS53_3435 PF00884 Sulfatase AS53_3437 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AS53_3437 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AS53_3439 PF01507 Phosphoadenosine phosphosulfate reductase family AS53_3440 PF14306 PUA-like domain AS53_3440 PF01747 ATP-sulfurylase AS53_3442 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS53_3442 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AS53_3444 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS53_3445 PF01903 CbiX AS53_3447 PF00209 Sodium:neurotransmitter symporter family AS53_3449 PF00375 Sodium:dicarboxylate symporter family AS53_3451 PF03553 Na+/H+ antiporter family AS53_3454 PF09922 Cell wall-active antibiotics response 4TMS YvqF AS53_3455 PF07730 Histidine kinase AS53_3455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3455 PF00672 HAMP domain AS53_3456 PF00196 Bacterial regulatory proteins, luxR family AS53_3456 PF00072 Response regulator receiver domain AS53_3458 PF05525 Branched-chain amino acid transport protein AS53_3460 PF08241 Methyltransferase domain AS53_3465 PF00970 Oxidoreductase FAD-binding domain AS53_3465 PF00042 Globin AS53_3465 PF00175 Oxidoreductase NAD-binding domain AS53_3468 PF01925 Sulfite exporter TauE/SafE AS53_3469 PF01384 Phosphate transporter family AS53_3470 PF01865 Protein of unknown function DUF47 AS53_3471 PF00912 Transglycosylase AS53_3471 PF00905 Penicillin binding protein transpeptidase domain AS53_3474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3474 PF00989 PAS fold AS53_3474 PF00512 His Kinase A (phospho-acceptor) domain AS53_3475 PF01904 Protein of unknown function DUF72 AS53_3477 PF00589 Phage integrase family AS53_3478 PF16736 Single Cache-like AS53_3478 PF00989 PAS fold AS53_3478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3478 PF00512 His Kinase A (phospho-acceptor) domain AS53_3479 PF01048 Phosphorylase superfamily AS53_3482 PF03706 Lysylphosphatidylglycerol synthase TM region AS53_3482 PF09924 Uncharacterised conserved protein (DUF2156) AS53_3485 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS53_3485 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS53_3486 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_3486 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_3487 PF07670 Nucleoside recognition AS53_3488 PF07670 Nucleoside recognition AS53_3489 PF00849 RNA pseudouridylate synthase AS53_3489 PF01479 S4 domain AS53_3490 PF00578 AhpC/TSA family AS53_3491 PF05140 ResB-like family AS53_3492 PF01578 Cytochrome C assembly protein AS53_3493 PF00486 Transcriptional regulatory protein, C terminal AS53_3493 PF00072 Response regulator receiver domain AS53_3494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3494 PF18698 Histidine kinase sensor domain AS53_3494 PF00672 HAMP domain AS53_3494 PF00989 PAS fold AS53_3494 PF00512 His Kinase A (phospho-acceptor) domain AS53_3495 PF01923 Cobalamin adenosyltransferase AS53_3498 PF12822 ECF transporter, substrate-specific component AS53_3500 PF14493 Helix-turn-helix domain AS53_3501 PF00270 DEAD/DEAH box helicase AS53_3501 PF00271 Helicase conserved C-terminal domain AS53_3502 PF02517 CPBP intramembrane metalloprotease AS53_3504 PF00149 Calcineurin-like phosphoesterase AS53_3505 PF13411 MerR HTH family regulatory protein AS53_3505 PF02310 B12 binding domain AS53_3505 PF02607 B12 binding domain AS53_3506 PF05389 Negative regulator of genetic competence (MecA) AS53_3507 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AS53_3507 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS53_3512 PF17763 Glutaminase/Asparaginase C-terminal domain AS53_3512 PF00710 Asparaginase, N-terminal AS53_3514 PF02224 Cytidylate kinase AS53_3515 PF00575 S1 RNA binding domain AS53_3516 PF01070 FMN-dependent dehydrogenase AS53_3517 PF14140 YpzI-like protein AS53_3519 PF14045 YIEGIA protein AS53_3521 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AS53_3521 PF01926 50S ribosome-binding GTPase AS53_3522 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AS53_3522 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AS53_3524 PF10966 Protein of unknown function (DUF2768) AS53_3526 PF09547 Stage IV sporulation protein A (spore_IV_A) AS53_3527 PF00216 Bacterial DNA-binding protein AS53_3528 PF01227 GTP cyclohydrolase I AS53_3529 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AS53_3530 PF01209 ubiE/COQ5 methyltransferase family AS53_3531 PF00348 Polyprenyl synthetase AS53_3532 PF00334 Nucleoside diphosphate kinase AS53_3533 PF01264 Chorismate synthase AS53_3534 PF01761 3-dehydroquinate synthase AS53_3535 PF00155 Aminotransferase class I and II AS53_3537 PF08858 IDEAL domain AS53_3537 PF08864 UPF0302 domain AS53_3538 PF10673 Protein of unknown function (DUF2487) AS53_3539 PF00355 Rieske [2Fe-2S] domain AS53_3540 PF00033 Cytochrome b/b6/petB AS53_3541 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS53_3541 PF00032 Cytochrome b(C-terminal)/b6/petD AS53_3542 PF07187 Protein of unknown function (DUF1405) AS53_3544 PF09577 Sporulation protein YpjB (SpoYpjB) AS53_3545 PF04298 Putative neutral zinc metallopeptidase AS53_3547 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_3547 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_3548 PF03819 MazG nucleotide pyrophosphohydrolase domain AS53_3549 PF01113 Dihydrodipicolinate reductase, N-terminus AS53_3549 PF05173 Dihydrodipicolinate reductase, C-terminus AS53_3550 PF02142 MGS-like domain AS53_3551 PF02585 GlcNAc-PI de-N-acetylase AS53_3552 PF13439 Glycosyltransferase Family 4 AS53_3552 PF00534 Glycosyl transferases group 1 AS53_3553 PF01743 Poly A polymerase head domain AS53_3553 PF12627 Probable RNA and SrmB- binding site of polymerase A AS53_3553 PF13735 tRNA nucleotidyltransferase domain 2 putative AS53_3554 PF03099 Biotin/lipoate A/B protein ligase family AS53_3554 PF08279 HTH domain AS53_3554 PF02237 Biotin protein ligase C terminal domain AS53_3556 PF02548 Ketopantoate hydroxymethyltransferase AS53_3557 PF02569 Pantoate-beta-alanine ligase AS53_3558 PF02261 Aspartate decarboxylase AS53_3559 PF13307 Helicase C-terminal domain AS53_3559 PF04851 Type III restriction enzyme, res subunit AS53_3559 PF00929 Exonuclease AS53_3560 PF14084 Protein of unknown function (DUF4264) AS53_3562 PF00155 Aminotransferase class I and II AS53_3563 PF07261 Replication initiation and membrane attachment AS53_3564 PF10576 Iron-sulfur binding domain of endonuclease III AS53_3564 PF00633 Helix-hairpin-helix motif AS53_3564 PF00730 HhH-GPD superfamily base excision DNA repair protein AS53_3566 PF00905 Penicillin binding protein transpeptidase domain AS53_3566 PF00912 Transglycosylase AS53_3567 PF03838 Recombination protein U AS53_3568 PF10720 Protein of unknown function (DUF2515) AS53_357 PF00574 Clp protease AS53_3575 PF06908 YspA SLOG family AS53_3576 PF05103 DivIVA protein AS53_3577 PF01170 Putative RNA methylase family UPF0020 AS53_3577 PF02926 THUMP domain AS53_3579 PF13307 Helicase C-terminal domain AS53_3580 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AS53_3582 PF01636 Phosphotransferase enzyme family AS53_3583 PF00557 Metallopeptidase family M24 AS53_3584 PF00156 Phosphoribosyl transferase domain AS53_3585 PF00860 Permease family AS53_3586 PF04235 Protein of unknown function (DUF418) AS53_3588 PF00350 Dynamin family AS53_359 PF03354 Phage Terminase AS53_3590 PF00583 Acetyltransferase (GNAT) family AS53_3591 PF10752 Protein of unknown function (DUF2533) AS53_3592 PF00581 Rhodanese-like domain AS53_3595 PF03738 Glutathionylspermidine synthase preATP-grasp AS53_3597 PF00690 Cation transporter/ATPase, N-terminus AS53_3597 PF00689 Cation transporting ATPase, C-terminus AS53_3598 PF01367 5'-3' exonuclease, C-terminal SAM fold AS53_3598 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AS53_3605 PF02397 Bacterial sugar transferase AS53_3608 PF00535 Glycosyl transferase family 2 AS53_3609 PF00534 Glycosyl transferases group 1 AS53_3609 PF13439 Glycosyltransferase Family 4 AS53_3612 PF18014 Acetyltransferase (GNAT) domain AS53_3612 PF13673 Acetyltransferase (GNAT) domain AS53_3616 PF13456 Reverse transcriptase-like AS53_3617 PF01263 Aldose 1-epimerase AS53_3622 PF00313 'Cold-shock' DNA-binding domain AS53_3624 PF01810 LysE type translocator AS53_3627 PF04341 Protein of unknown function, DUF485 AS53_3628 PF00474 Sodium:solute symporter family AS53_3629 PF00202 Aminotransferase class-III AS53_363 PF10137 Predicted nucleotide-binding protein containing TIR-like domain AS53_3631 PF00999 Sodium/hydrogen exchanger family AS53_3632 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS53_3632 PF17770 Ribonuclease J C-terminal domain AS53_3632 PF00753 Metallo-beta-lactamase superfamily AS53_3633 PF06445 GyrI-like small molecule binding domain AS53_3633 PF13411 MerR HTH family regulatory protein AS53_3635 PF04239 Protein of unknown function (DUF421) AS53_3636 PF02698 DUF218 domain AS53_3638 PF00881 Nitroreductase family AS53_364 PF00589 Phage integrase family AS53_3647 PF17209 Hfq protein AS53_3649 PF01618 MotA/TolQ/ExbB proton channel family AS53_3650 PF00691 OmpA family AS53_3650 PF13677 Membrane MotB of proton-channel complex MotA/MotB AS53_3651 PF00072 Response regulator receiver domain AS53_3652 PF01627 Hpt domain AS53_3652 PF01584 CheW-like domain AS53_3652 PF07194 P2 response regulator binding domain AS53_3652 PF02895 Signal transducing histidine kinase, homodimeric domain AS53_3652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3653 PF01627 Hpt domain AS53_3653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3653 PF02895 Signal transducing histidine kinase, homodimeric domain AS53_3653 PF01584 CheW-like domain AS53_3653 PF07194 P2 response regulator binding domain AS53_3654 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS53_3654 PF04509 CheC-like family AS53_3657 PF01739 CheR methyltransferase, SAM binding domain AS53_3657 PF03705 CheR methyltransferase, all-alpha domain AS53_3661 PF00460 Flagella basal body rod protein AS53_3661 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS53_3662 PF00669 Bacterial flagellin N-terminal helical region AS53_3662 PF00700 Bacterial flagellin C-terminal helical region AS53_3667 PF00460 Flagella basal body rod protein AS53_3668 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS53_3668 PF00460 Flagella basal body rod protein AS53_3669 PF02049 Flagellar hook-basal body complex protein FliE AS53_3670 PF01514 Secretory protein of YscJ/FliF family AS53_3670 PF08345 Flagellar M-ring protein C-terminal AS53_3672 PF14842 FliG N-terminal domain AS53_3672 PF14841 FliG middle domain AS53_3672 PF01706 FliG C-terminal domain AS53_3674 PF18269 T3SS EscN ATPase C-terminal domain AS53_3674 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS53_3674 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS53_3679 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS53_3679 PF07559 Flagellar basal body protein FlaE AS53_3679 PF00460 Flagella basal body rod protein AS53_3683 PF01584 CheW-like domain AS53_3683 PF00072 Response regulator receiver domain AS53_3684 PF12181 DNA binding domain of the motility gene repressor (MogR) AS53_3685 PF00535 Glycosyl transferase family 2 AS53_3691 PF00535 Glycosyl transferase family 2 AS53_3691 PF13181 Tetratricopeptide repeat AS53_3696 PF00669 Bacterial flagellin N-terminal helical region AS53_3696 PF00700 Bacterial flagellin C-terminal helical region AS53_3697 PF01464 Transglycosylase SLT domain AS53_3698 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS53_3698 PF02154 Flagellar motor switch protein FliM AS53_3700 PF04509 CheC-like family AS53_3700 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS53_3702 PF00813 FliP family AS53_3703 PF01313 Bacterial export proteins, family 3 AS53_3705 PF01312 FlhB HrpN YscU SpaS Family AS53_3706 PF00771 FHIPEP family AS53_3707 PF00448 SRP54-type protein, GTPase domain AS53_3708 PF00460 Flagella basal body rod protein AS53_3708 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS53_3709 PF02272 DHHA1 domain AS53_3709 PF01411 tRNA synthetases class II (A) AS53_3709 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS53_3714 PF00440 Bacterial regulatory proteins, tetR family AS53_3714 PF17932 Tetracyclin repressor-like, C-terminal domain AS53_3715 PF17329 Family of unknown function (DUF5367) AS53_3718 PF03992 Antibiotic biosynthesis monooxygenase AS53_3719 PF08141 Small acid-soluble spore protein H family AS53_3724 PF08402 TOBE domain AS53_3724 PF00005 ABC transporter AS53_3726 PF00528 Binding-protein-dependent transport system inner membrane component AS53_3727 PF12706 Beta-lactamase superfamily domain AS53_3727 PF00753 Metallo-beta-lactamase superfamily AS53_3729 PF10787 Uncharacterised protein from bacillus cereus group AS53_3732 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_3732 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_3734 PF00300 Histidine phosphatase superfamily (branch 1) AS53_374 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_3741 PF13537 Glutamine amidotransferase domain AS53_3741 PF00733 Asparagine synthase AS53_3745 PF16916 Dimerisation domain of Zinc Transporter AS53_3745 PF01545 Cation efflux family AS53_3747 PF00392 Bacterial regulatory proteins, gntR family AS53_3747 PF07729 FCD domain AS53_3748 PF00892 EamA-like transporter family AS53_3749 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS53_3749 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS53_3750 PF03773 Predicted permease AS53_3752 PF00535 Glycosyl transferase family 2 AS53_3753 PF03553 Na+/H+ antiporter family AS53_3754 PF10415 Fumarase C C-terminus AS53_3754 PF00206 Lyase AS53_3758 PF01554 MatE AS53_3759 PF01554 MatE AS53_3760 PF03575 Peptidase family S51 AS53_3765 PF02683 Cytochrome C biogenesis protein transmembrane region AS53_3766 PF00578 AhpC/TSA family AS53_3771 PF00291 Pyridoxal-phosphate dependent enzyme AS53_3772 PF04286 Protein of unknown function (DUF445) AS53_3777 PF00196 Bacterial regulatory proteins, luxR family AS53_3777 PF00072 Response regulator receiver domain AS53_3778 PF07730 Histidine kinase AS53_3778 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3778 PF13492 GAF domain AS53_3778 PF13185 GAF domain AS53_3779 PF00005 ABC transporter AS53_3782 PF13091 PLD-like domain AS53_3783 PF00696 Amino acid kinase family AS53_3784 PF00375 Sodium:dicarboxylate symporter family AS53_3785 PF10415 Fumarase C C-terminus AS53_3785 PF00206 Lyase AS53_3786 PF03949 Malic enzyme, NAD binding domain AS53_3786 PF00390 Malic enzyme, N-terminal domain AS53_3787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3788 PF00072 Response regulator receiver domain AS53_3788 PF08664 YcbB domain AS53_3789 PF00176 SNF2 family N-terminal domain AS53_3789 PF04434 SWIM zinc finger AS53_3789 PF00271 Helicase conserved C-terminal domain AS53_379 PF04542 Sigma-70 region 2 AS53_379 PF04539 Sigma-70 region 3 AS53_379 PF04545 Sigma-70, region 4 AS53_3791 PF03590 Aspartate-ammonia ligase AS53_3795 PF00696 Amino acid kinase family AS53_3795 PF13840 ACT domain AS53_3798 PF13761 Domain of unknown function (DUF4166) AS53_3799 PF14158 YndJ-like protein AS53_3800 PF00293 NUDIX domain AS53_3801 PF02368 Bacterial Ig-like domain (group 2) AS53_3801 PF13205 Bacterial Ig-like domain AS53_3801 PF00395 S-layer homology domain AS53_3803 PF07690 Major Facilitator Superfamily AS53_3806 PF02554 Carbon starvation protein CstA AS53_3807 PF03976 Polyphosphate kinase 2 (PPK2) AS53_3808 PF07690 Major Facilitator Superfamily AS53_3809 PF07690 Major Facilitator Superfamily AS53_3810 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS53_3810 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS53_3812 PF13167 GTP-binding GTPase N-terminal AS53_3812 PF16360 GTP-binding GTPase Middle Region AS53_3812 PF01926 50S ribosome-binding GTPase AS53_3814 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_3815 PF07690 Major Facilitator Superfamily AS53_3816 PF00291 Pyridoxal-phosphate dependent enzyme AS53_3819 PF14667 Polysaccharide biosynthesis C-terminal domain AS53_3819 PF01943 Polysaccharide biosynthesis protein AS53_3820 PF00209 Sodium:neurotransmitter symporter family AS53_3821 PF01522 Polysaccharide deacetylase AS53_3821 PF00457 Glycosyl hydrolases family 11 AS53_3821 PF03422 Carbohydrate binding module (family 6) AS53_3823 PF04239 Protein of unknown function (DUF421) AS53_3826 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS53_3826 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS53_3830 PF01625 Peptide methionine sulfoxide reductase AS53_3832 PF01063 Amino-transferase class IV AS53_3833 PF00205 Thiamine pyrophosphate enzyme, central domain AS53_3833 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS53_3833 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS53_3834 PF10369 Small subunit of acetolactate synthase AS53_3835 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AS53_3835 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AS53_3836 PF00920 Dehydratase family AS53_3837 PF00291 Pyridoxal-phosphate dependent enzyme AS53_3837 PF00585 C-terminal regulatory domain of Threonine dehydratase AS53_3839 PF09587 Bacterial capsule synthesis protein PGA_cap AS53_384 PF07319 Primosomal protein DnaI N-terminus AS53_384 PF01695 IstB-like ATP binding protein AS53_3842 PF07690 Major Facilitator Superfamily AS53_3843 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AS53_3845 PF04397 LytTr DNA-binding domain AS53_3845 PF00072 Response regulator receiver domain AS53_3846 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AS53_3846 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AS53_3849 PF01979 Amidohydrolase family AS53_3850 PF13026 Protein of unknown function (DUF3887) AS53_3850 PF12146 Serine aminopeptidase, S33 AS53_3851 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_3856 PF04055 Radical SAM superfamily AS53_3856 PF13186 Iron-sulfur cluster-binding domain AS53_3857 PF13302 Acetyltransferase (GNAT) domain AS53_3858 PF00072 Response regulator receiver domain AS53_3858 PF00486 Transcriptional regulatory protein, C terminal AS53_3860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3860 PF00512 His Kinase A (phospho-acceptor) domain AS53_3862 PF01566 Natural resistance-associated macrophage protein AS53_3865 PF02558 Ketopantoate reductase PanE/ApbA AS53_3865 PF08546 Ketopantoate reductase PanE/ApbA C terminal AS53_3867 PF13520 Amino acid permease AS53_3868 PF13520 Amino acid permease AS53_3870 PF05791 Bacillus haemolytic enterotoxin (HBL) AS53_3871 PF05791 Bacillus haemolytic enterotoxin (HBL) AS53_3873 PF04198 Putative sugar-binding domain AS53_3874 PF01791 DeoC/LacD family aldolase AS53_3875 PF07662 Na+ dependent nucleoside transporter C-terminus AS53_3875 PF01773 Na+ dependent nucleoside transporter N-terminus AS53_3876 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AS53_3876 PF00591 Glycosyl transferase family, a/b domain AS53_3876 PF02885 Glycosyl transferase family, helical bundle domain AS53_3877 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS53_3878 PF05979 Bacterial protein of unknown function (DUF896) AS53_3882 PF05195 Aminopeptidase P, N-terminal domain AS53_3882 PF00557 Metallopeptidase family M24 AS53_3883 PF07732 Multicopper oxidase AS53_3883 PF07731 Multicopper oxidase AS53_3884 PF01551 Peptidase family M23 AS53_3889 PF02525 Flavodoxin-like fold AS53_3890 PF05525 Branched-chain amino acid transport protein AS53_3891 PF05525 Branched-chain amino acid transport protein AS53_3893 PF13115 YtkA-like AS53_3893 PF04234 CopC domain AS53_3893 PF05425 Copper resistance protein D AS53_3894 PF07987 Domain of unkown function (DUF1775) AS53_3896 PF00892 EamA-like transporter family AS53_3897 PF03466 LysR substrate binding domain AS53_3897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_3898 PF02082 Transcriptional regulator AS53_3899 PF01323 DSBA-like thioredoxin domain AS53_390 PF01381 Helix-turn-helix AS53_3900 PF00881 Nitroreductase family AS53_3902 PF01425 Amidase AS53_3903 PF01594 AI-2E family transporter AS53_3904 PF00056 lactate/malate dehydrogenase, NAD binding domain AS53_3904 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS53_3905 PF01593 Flavin containing amine oxidoreductase AS53_3906 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS53_3906 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS53_3909 PF00501 AMP-binding enzyme AS53_3909 PF13193 AMP-binding enzyme C-terminal domain AS53_3910 PF01575 MaoC like domain AS53_3911 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS53_3911 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS53_3913 PF12399 Branched-chain amino acid ATP-binding cassette transporter AS53_3913 PF00005 ABC transporter AS53_3914 PF00005 ABC transporter AS53_3915 PF02653 Branched-chain amino acid transport system / permease component AS53_3917 PF03466 LysR substrate binding domain AS53_3917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_3919 PF14552 Tautomerase enzyme AS53_3921 PF01047 MarR family AS53_3923 PF01654 Cytochrome bd terminal oxidase subunit I AS53_3924 PF02322 Cytochrome bd terminal oxidase subunit II AS53_3925 PF00005 ABC transporter AS53_3925 PF00664 ABC transporter transmembrane region AS53_3926 PF00005 ABC transporter AS53_3926 PF00664 ABC transporter transmembrane region AS53_3929 PF17676 LD-carboxypeptidase C-terminal domain AS53_3929 PF02016 LD-carboxypeptidase N-terminal domain AS53_3930 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_3930 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_3932 PF01476 LysM domain AS53_3932 PF00877 NlpC/P60 family AS53_3934 PF00664 ABC transporter transmembrane region AS53_3934 PF00005 ABC transporter AS53_3935 PF00664 ABC transporter transmembrane region AS53_3935 PF00005 ABC transporter AS53_3936 PF00072 Response regulator receiver domain AS53_3936 PF00486 Transcriptional regulatory protein, C terminal AS53_3937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3937 PF16736 Single Cache-like AS53_3937 PF00512 His Kinase A (phospho-acceptor) domain AS53_3937 PF00989 PAS fold AS53_394 PF01381 Helix-turn-helix AS53_3941 PF04439 Streptomycin adenylyltransferase AS53_3942 PF01522 Polysaccharide deacetylase AS53_3942 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AS53_3946 PF00742 Homoserine dehydrogenase AS53_3946 PF03447 Homoserine dehydrogenase, NAD binding domain AS53_3946 PF01842 ACT domain AS53_3947 PF00291 Pyridoxal-phosphate dependent enzyme AS53_3948 PF08544 GHMP kinases C terminal AS53_3948 PF00288 GHMP kinases N terminal domain AS53_3951 PF03816 Cell envelope-related transcriptional attenuator domain AS53_3953 PF00072 Response regulator receiver domain AS53_3953 PF00486 Transcriptional regulatory protein, C terminal AS53_3954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_3954 PF00989 PAS fold AS53_3954 PF00512 His Kinase A (phospho-acceptor) domain AS53_3954 PF16736 Single Cache-like AS53_3955 PF01522 Polysaccharide deacetylase AS53_3957 PF02308 MgtC family AS53_3958 PF00583 Acetyltransferase (GNAT) family AS53_3959 PF04183 IucA / IucC family AS53_3959 PF06276 Ferric iron reductase FhuF-like transporter AS53_3960 PF04183 IucA / IucC family AS53_3960 PF06276 Ferric iron reductase FhuF-like transporter AS53_3961 PF00501 AMP-binding enzyme AS53_3961 PF13193 AMP-binding enzyme C-terminal domain AS53_3964 PF01261 Xylose isomerase-like TIM barrel AS53_3965 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS53_3966 PF07690 Major Facilitator Superfamily AS53_3967 PF07690 Major Facilitator Superfamily AS53_3968 PF01810 LysE type translocator AS53_3970 PF01734 Patatin-like phospholipase AS53_3975 PF13344 Haloacid dehalogenase-like hydrolase AS53_3975 PF00293 NUDIX domain AS53_3976 PF02540 NAD synthase AS53_3977 PF02687 FtsX-like permease family AS53_3978 PF02687 FtsX-like permease family AS53_3979 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS53_3979 PF18277 AbrB C-terminal domain AS53_398 PF00589 Phage integrase family AS53_398 PF14659 Phage integrase, N-terminal SAM-like domain AS53_3980 PF00082 Subtilase family AS53_3981 PF01022 Bacterial regulatory protein, arsR family AS53_3982 PF00248 Aldo/keto reductase family AS53_3983 PF07690 Major Facilitator Superfamily AS53_3987 PF03193 RsgA GTPase AS53_3988 PF00672 HAMP domain AS53_3988 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_3988 PF02743 Cache domain AS53_399 PF05636 HIGH Nucleotidyl Transferase AS53_3992 PF00210 Ferritin-like domain AS53_3995 PF00296 Luciferase-like monooxygenase AS53_3997 PF01593 Flavin containing amine oxidoreductase AS53_3999 PF00248 Aldo/keto reductase family AS53_40 PF01471 Putative peptidoglycan binding domain AS53_40 PF01476 LysM domain AS53_40 PF01510 N-acetylmuramoyl-L-alanine amidase AS53_400 PF05362 Lon protease (S16) C-terminal proteolytic domain AS53_400 PF13180 PDZ domain AS53_4000 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS53_4000 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS53_4001 PF00583 Acetyltransferase (GNAT) family AS53_401 PF01734 Patatin-like phospholipase AS53_4011 PF01297 Zinc-uptake complex component A periplasmic AS53_4011 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AS53_4013 PF13460 NAD(P)H-binding AS53_4014 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS53_4015 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AS53_4015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AS53_4017 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_4018 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_402 PF01467 Cytidylyltransferase-like AS53_4020 PF00300 Histidine phosphatase superfamily (branch 1) AS53_4022 PF08757 CotH kinase protein AS53_4023 PF00293 NUDIX domain AS53_4024 PF09335 SNARE associated Golgi protein AS53_4025 PF01943 Polysaccharide biosynthesis protein AS53_4025 PF14667 Polysaccharide biosynthesis C-terminal domain AS53_4027 PF03773 Predicted permease AS53_4028 PF09323 Domain of unknown function (DUF1980) AS53_4029 PF03061 Thioesterase superfamily AS53_403 PF07670 Nucleoside recognition AS53_4030 PF13091 PLD-like domain AS53_4030 PF13396 Phospholipase_D-nuclease N-terminal AS53_4033 PF13460 NAD(P)H-binding AS53_4034 PF04306 Protein of unknown function (DUF456) AS53_4035 PF00571 CBS domain AS53_4035 PF03471 Transporter associated domain AS53_4035 PF01595 Cyclin M transmembrane N-terminal domain AS53_4038 PF05525 Branched-chain amino acid transport protein AS53_4039 PF01588 Putative tRNA binding domain AS53_4043 PF07454 Stage II sporulation protein P (SpoIIP) AS53_4045 PF02557 D-alanyl-D-alanine carboxypeptidase AS53_4047 PF01425 Amidase AS53_4048 PF07690 Major Facilitator Superfamily AS53_4050 PF01145 SPFH domain / Band 7 family AS53_4051 PF00300 Histidine phosphatase superfamily (branch 1) AS53_4054 PF00842 Alanine racemase, C-terminal domain AS53_4054 PF01168 Alanine racemase, N-terminal domain AS53_4058 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AS53_4059 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_4059 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_4060 PF00392 Bacterial regulatory proteins, gntR family AS53_4060 PF00155 Aminotransferase class I and II AS53_4066 PF00583 Acetyltransferase (GNAT) family AS53_407 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AS53_4075 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AS53_408 PF06133 Control of competence regulator ComK, YlbF/YmcA AS53_4080 PF01209 ubiE/COQ5 methyltransferase family AS53_4081 PF01268 Formate--tetrahydrofolate ligase AS53_4083 PF00270 DEAD/DEAH box helicase AS53_4083 PF00271 Helicase conserved C-terminal domain AS53_4084 PF01261 Xylose isomerase-like TIM barrel AS53_4085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_4087 PF00107 Zinc-binding dehydrogenase AS53_4087 PF08240 Alcohol dehydrogenase GroES-like domain AS53_4088 PF08281 Sigma-70, region 4 AS53_4088 PF04542 Sigma-70 region 2 AS53_409 PF00300 Histidine phosphatase superfamily (branch 1) AS53_4093 PF00255 Glutathione peroxidase AS53_4094 PF13559 Domain of unknown function (DUF4129) AS53_4094 PF11992 Domain of unknown function (DUF3488) AS53_4094 PF01841 Transglutaminase-like superfamily AS53_4095 PF01882 Protein of unknown function DUF58 AS53_4096 PF17863 AAA lid domain AS53_4096 PF07726 ATPase family associated with various cellular activities (AAA) AS53_4099 PF14710 Respiratory nitrate reductase alpha N-terminal AS53_4099 PF01568 Molydopterin dinucleotide binding domain AS53_4099 PF00384 Molybdopterin oxidoreductase AS53_41 PF05105 Bacteriophage holin family AS53_410 PF14003 YlbE-like protein AS53_4100 PF13247 4Fe-4S dicluster domain AS53_4100 PF14711 Respiratory nitrate reductase beta C-terminal AS53_4101 PF02613 Nitrate reductase delta subunit AS53_4102 PF02665 Nitrate reductase gamma subunit AS53_4103 PF00155 Aminotransferase class I and II AS53_4103 PF00392 Bacterial regulatory proteins, gntR family AS53_4104 PF00005 ABC transporter AS53_4106 PF00027 Cyclic nucleotide-binding domain AS53_4106 PF00325 Bacterial regulatory proteins, crp family AS53_4107 PF04055 Radical SAM superfamily AS53_4107 PF06463 Molybdenum Cofactor Synthesis C AS53_4108 PF00899 ThiF family AS53_4109 PF00994 Probable molybdopterin binding domain AS53_4109 PF03454 MoeA C-terminal region (domain IV) AS53_4109 PF03453 MoeA N-terminal region (domain I and II) AS53_411 PF14071 Putative coat protein AS53_4110 PF02391 MoaE protein AS53_4112 PF07690 Major Facilitator Superfamily AS53_4116 PF01903 CbiX AS53_4117 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS53_4118 PF00355 Rieske [2Fe-2S] domain AS53_4119 PF04324 BFD-like [2Fe-2S] binding domain AS53_4119 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS53_4119 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AS53_4119 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_4119 PF18267 Rubredoxin NAD+ reductase C-terminal domain AS53_412 PF00188 Cysteine-rich secretory protein family AS53_412 PF14504 CAP-associated N-terminal AS53_4120 PF01814 Hemerythrin HHE cation binding domain AS53_4120 PF04405 Domain of Unknown function (DUF542) AS53_4127 PF04232 Stage V sporulation protein S (SpoVS) AS53_413 PF08868 YugN-like family AS53_4130 PF01510 N-acetylmuramoyl-L-alanine amidase AS53_4133 PF01966 HD domain AS53_4134 PF00005 ABC transporter AS53_4134 PF12848 ABC transporter AS53_4134 PF16326 ABC transporter C-terminal domain AS53_4137 PF00436 Single-strand binding protein family AS53_4138 PF00440 Bacterial regulatory proteins, tetR family AS53_4139 PF01494 FAD binding domain AS53_414 PF00795 Carbon-nitrogen hydrolase AS53_4140 PF01494 FAD binding domain AS53_4141 PF13769 Virulence factor AS53_4141 PF08712 Scaffold protein Nfu/NifU N terminal AS53_4143 PF06491 Disulphide isomerase AS53_4144 PF04445 Putative SAM-dependent methyltransferase AS53_4145 PF00750 tRNA synthetases class I (R) AS53_4145 PF05746 DALR anticodon binding domain AS53_4145 PF03485 Arginyl tRNA synthetase N terminal domain AS53_415 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AS53_4151 PF08264 Anticodon-binding domain of tRNA AS53_4151 PF00133 tRNA synthetases class I (I, L, M and V) AS53_4154 PF01225 Mur ligase family, catalytic domain AS53_4154 PF08245 Mur ligase middle domain AS53_4154 PF02875 Mur ligase family, glutamate ligase domain AS53_4155 PF01336 OB-fold nucleic acid binding domain AS53_4155 PF00152 tRNA synthetases class II (D, K and N) AS53_4159 PF12538 DNA transporter AS53_4159 PF01580 FtsK/SpoIIIE family AS53_416 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AS53_417 PF00510 Cytochrome c oxidase subunit III AS53_4178 PF02595 Glycerate kinase family AS53_4179 PF00939 Sodium:sulfate symporter transmembrane region AS53_418 PF00115 Cytochrome C and Quinol oxidase polypeptide I AS53_4180 PF00072 Response regulator receiver domain AS53_4180 PF00486 Transcriptional regulatory protein, C terminal AS53_4181 PF00672 HAMP domain AS53_4181 PF00512 His Kinase A (phospho-acceptor) domain AS53_4181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_4184 PF00209 Sodium:neurotransmitter symporter family AS53_4187 PF10997 Alternate to MurJ AS53_4188 PF13419 Haloacid dehalogenase-like hydrolase AS53_419 PF00034 Cytochrome c AS53_419 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AS53_419 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AS53_4190 PF00465 Iron-containing alcohol dehydrogenase AS53_4191 PF01177 Asp/Glu/Hydantoin racemase AS53_4192 PF01980 tRNA-methyltransferase O AS53_4193 PF00583 Acetyltransferase (GNAT) family AS53_4197 PF00005 ABC transporter AS53_4198 PF05975 Bacterial ABC transporter protein EcsB AS53_4199 PF14005 YpjP-like protein AS53_420 PF01040 UbiA prenyltransferase family AS53_4200 PF13419 Haloacid dehalogenase-like hydrolase AS53_4204 PF07930 D-aminopeptidase, domain B AS53_4204 PF00144 Beta-lactamase AS53_4205 PF00303 Thymidylate synthase AS53_4206 PF00186 Dihydrofolate reductase AS53_4207 PF05223 NTF2-like N-terminal transpeptidase domain AS53_4207 PF00905 Penicillin binding protein transpeptidase domain AS53_4207 PF03717 Penicillin-binding Protein dimerisation domain AS53_4208 PF02525 Flavodoxin-like fold AS53_4209 PF01553 Acyltransferase AS53_421 PF02628 Cytochrome oxidase assembly protein AS53_4210 PF03006 Haemolysin-III related AS53_4211 PF02416 mttA/Hcf106 family AS53_4212 PF00902 Sec-independent protein translocase protein (TatC) AS53_4214 PF02645 Uncharacterised protein, DegV family COG1307 AS53_4216 PF02630 SCO1/SenC AS53_4217 PF00011 Hsp20/alpha crystallin family AS53_4218 PF00733 Asparagine synthase AS53_4218 PF13537 Glutamine amidotransferase domain AS53_422 PF02436 Conserved carboxylase domain AS53_422 PF00682 HMGL-like AS53_422 PF00364 Biotin-requiring enzyme AS53_422 PF00289 Biotin carboxylase, N-terminal domain AS53_422 PF02785 Biotin carboxylase C-terminal domain AS53_422 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS53_4222 PF01497 Periplasmic binding protein AS53_4223 PF01063 Amino-transferase class IV AS53_4224 PF00881 Nitroreductase family AS53_4227 PF00857 Isochorismatase family AS53_4228 PF00293 NUDIX domain AS53_4229 PF00011 Hsp20/alpha crystallin family AS53_423 PF01098 Cell cycle protein AS53_4230 PF00924 Mechanosensitive ion channel AS53_4231 PF13185 GAF domain AS53_4231 PF07730 Histidine kinase AS53_4232 PF00072 Response regulator receiver domain AS53_4232 PF00196 Bacterial regulatory proteins, luxR family AS53_4234 PF01380 SIS domain AS53_4234 PF01418 Helix-turn-helix domain, rpiR family AS53_4235 PF08240 Alcohol dehydrogenase GroES-like domain AS53_4235 PF00107 Zinc-binding dehydrogenase AS53_4238 PF00144 Beta-lactamase AS53_424 PF07408 Protein of unknown function (DUF1507) AS53_4242 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_4242 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_4243 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_4243 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_4246 PF03358 NADPH-dependent FMN reductase AS53_4249 PF00005 ABC transporter AS53_4249 PF00571 CBS domain AS53_4250 PF00528 Binding-protein-dependent transport system inner membrane component AS53_4251 PF13520 Amino acid permease AS53_4257 PF00571 CBS domain AS53_4257 PF03471 Transporter associated domain AS53_4257 PF01595 Cyclin M transmembrane N-terminal domain AS53_4258 PF00171 Aldehyde dehydrogenase family AS53_4259 PF07997 Protein of unknown function (DUF1694) AS53_426 PF02562 PhoH-like protein AS53_426 PF13638 PIN domain AS53_4260 PF09385 Histidine kinase N terminal AS53_4262 PF00202 Aminotransferase class-III AS53_4263 PF01144 Coenzyme A transferase AS53_4264 PF01144 Coenzyme A transferase AS53_4265 PF07687 Peptidase dimerisation domain AS53_4265 PF01546 Peptidase family M20/M25/M40 AS53_4266 PF00583 Acetyltransferase (GNAT) family AS53_4267 PF13426 PAS domain AS53_4267 PF00158 Sigma-54 interaction domain AS53_4267 PF02954 Bacterial regulatory protein, Fis family AS53_4268 PF12544 Lysine-2,3-aminomutase AS53_4269 PF14122 YokU-like protein, putative antitoxin AS53_4270 PF06855 YozE SAM-like fold AS53_4273 PF14162 YozD-like protein AS53_4276 PF07070 SpoOM protein AS53_4277 PF16916 Dimerisation domain of Zinc Transporter AS53_4277 PF01545 Cation efflux family AS53_4278 PF01569 PAP2 superfamily AS53_4279 PF00085 Thioredoxin AS53_428 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AS53_4281 PF14436 Bacterial EndoU nuclease AS53_4281 PF04740 LXG domain of WXG superfamily AS53_4282 PF00150 Cellulase (glycosyl hydrolase family 5) AS53_4282 PF00395 S-layer homology domain AS53_4282 PF03424 Carbohydrate binding domain (family 17/28) AS53_4284 PF04471 Restriction endonuclease AS53_430 PF14036 YlaH-like protein AS53_4304 PF10676 Spore germination protein gerPA/gerPF AS53_4308 PF00912 Transglycosylase AS53_4308 PF00905 Penicillin binding protein transpeptidase domain AS53_4309 PF07690 Major Facilitator Superfamily AS53_4310 PF01521 Iron-sulphur cluster biosynthesis AS53_4311 PF00285 Citrate synthase, C-terminal domain AS53_4312 PF03972 MmgE/PrpD family AS53_4314 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS53_4314 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS53_4314 PF02770 Acyl-CoA dehydrogenase, middle domain AS53_4315 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS53_4315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS53_4316 PF00171 Aldehyde dehydrogenase family AS53_4317 PF01810 LysE type translocator AS53_4318 PF00378 Enoyl-CoA hydratase/isomerase AS53_4320 PF10763 Protein of unknown function (DUF2584) AS53_4321 PF12320 Type 5 capsule protein repressor C-terminal domain AS53_4321 PF00149 Calcineurin-like phosphoesterase AS53_4322 PF13476 AAA domain AS53_4324 PF01022 Bacterial regulatory protein, arsR family AS53_4326 PF07690 Major Facilitator Superfamily AS53_4327 PF00106 short chain dehydrogenase AS53_4328 PF00425 chorismate binding enzyme AS53_4329 PF13193 AMP-binding enzyme C-terminal domain AS53_4329 PF00501 AMP-binding enzyme AS53_433 PF00459 Inositol monophosphatase family AS53_4330 PF00550 Phosphopantetheine attachment site AS53_4330 PF00857 Isochorismatase family AS53_4331 PF13193 AMP-binding enzyme C-terminal domain AS53_4331 PF00550 Phosphopantetheine attachment site AS53_4331 PF00501 AMP-binding enzyme AS53_4331 PF00975 Thioesterase domain AS53_4331 PF00668 Condensation domain AS53_4332 PF03621 MbtH-like protein AS53_4333 PF07690 Major Facilitator Superfamily AS53_4336 PF00216 Bacterial DNA-binding protein AS53_4338 PF05163 DinB family AS53_4339 PF00082 Subtilase family AS53_4340 PF01235 Sodium:alanine symporter family AS53_4343 PF16291 Domain of unknown function (DUF4937 AS53_4344 PF01479 S4 domain AS53_4344 PF00849 RNA pseudouridylate synthase AS53_4345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS53_4345 PF03129 Anticodon binding domain AS53_4345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS53_4345 PF02824 TGS domain AS53_4349 PF12146 Serine aminopeptidase, S33 AS53_435 PF06335 Protein of unknown function (DUF1054) AS53_4350 PF07690 Major Facilitator Superfamily AS53_4355 PF13649 Methyltransferase domain AS53_436 PF05256 Uncharacterised protein family (UPF0223) AS53_4364 PF00753 Metallo-beta-lactamase superfamily AS53_4364 PF16123 Hydroxyacylglutathione hydrolase C-terminus AS53_4366 PF03176 MMPL family AS53_4368 PF00302 Chloramphenicol acetyltransferase AS53_437 PF01276 Orn/Lys/Arg decarboxylase, major domain AS53_437 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AS53_4371 PF00583 Acetyltransferase (GNAT) family AS53_4379 PF13302 Acetyltransferase (GNAT) domain AS53_4381 PF00313 'Cold-shock' DNA-binding domain AS53_4393 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_4393 PF03466 LysR substrate binding domain AS53_4394 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS53_4394 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS53_4397 PF03466 LysR substrate binding domain AS53_4397 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_4398 PF03473 MOSC domain AS53_4398 PF03475 3-alpha domain AS53_4401 PF00664 ABC transporter transmembrane region AS53_4401 PF00005 ABC transporter AS53_4402 PF00664 ABC transporter transmembrane region AS53_4402 PF00005 ABC transporter AS53_4405 PF01810 LysE type translocator AS53_4406 PF07883 Cupin domain AS53_4406 PF01381 Helix-turn-helix AS53_4410 PF00890 FAD binding domain AS53_4411 PF04542 Sigma-70 region 2 AS53_4411 PF08281 Sigma-70, region 4 AS53_4411 PF12680 SnoaL-like domain AS53_4416 PF02638 Glycosyl hydrolase-like 10 AS53_4418 PF02378 Phosphotransferase system, EIIC AS53_4420 PF03702 Anhydro-N-acetylmuramic acid kinase AS53_4421 PF01869 BadF/BadG/BcrA/BcrD ATPase family AS53_4422 PF02660 Glycerol-3-phosphate acyltransferase AS53_4423 PF00266 Aminotransferase class-V AS53_4424 PF00291 Pyridoxal-phosphate dependent enzyme AS53_4426 PF16123 Hydroxyacylglutathione hydrolase C-terminus AS53_4426 PF00753 Metallo-beta-lactamase superfamily AS53_4429 PF00271 Helicase conserved C-terminal domain AS53_4429 PF00270 DEAD/DEAH box helicase AS53_4431 PF00440 Bacterial regulatory proteins, tetR family AS53_4431 PF17932 Tetracyclin repressor-like, C-terminal domain AS53_4434 PF00005 ABC transporter AS53_4434 PF02687 FtsX-like permease family AS53_4434 PF12704 MacB-like periplasmic core domain AS53_4435 PF09313 Domain of unknown function (DUF1971) AS53_4435 PF03848 Tellurite resistance protein TehB AS53_4437 PF08241 Methyltransferase domain AS53_4438 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS53_4438 PF00205 Thiamine pyrophosphate enzyme, central domain AS53_4438 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS53_4439 PF12802 MarR family AS53_4440 PF00300 Histidine phosphatase superfamily (branch 1) AS53_4441 PF14171 Toxin SpoIISA, type II toxin-antitoxin system AS53_4447 PF01546 Peptidase family M20/M25/M40 AS53_4447 PF07687 Peptidase dimerisation domain AS53_445 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS53_4451 PF08281 Sigma-70, region 4 AS53_4451 PF04542 Sigma-70 region 2 AS53_4453 PF00905 Penicillin binding protein transpeptidase domain AS53_4453 PF03717 Penicillin-binding Protein dimerisation domain AS53_4457 PF01569 PAP2 superfamily AS53_4458 PF00356 Bacterial regulatory proteins, lacI family AS53_4459 PF07690 Major Facilitator Superfamily AS53_446 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS53_446 PF00364 Biotin-requiring enzyme AS53_446 PF02817 e3 binding domain AS53_4460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS53_4460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS53_4461 PF00294 pfkB family carbohydrate kinase AS53_4462 PF00171 Aldehyde dehydrogenase family AS53_4463 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS53_4463 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS53_4463 PF00205 Thiamine pyrophosphate enzyme, central domain AS53_4464 PF01261 Xylose isomerase-like TIM barrel AS53_4465 PF01116 Fructose-bisphosphate aldolase class-II AS53_4466 PF04962 KduI/IolB family AS53_447 PF02779 Transketolase, pyrimidine binding domain AS53_447 PF02780 Transketolase, C-terminal domain AS53_4470 PF02872 5'-nucleotidase, C-terminal domain AS53_4470 PF00149 Calcineurin-like phosphoesterase AS53_4471 PF02872 5'-nucleotidase, C-terminal domain AS53_4471 PF00149 Calcineurin-like phosphoesterase AS53_4473 PF18801 response regulator aspartate phosphatase H, N terminal AS53_4474 PF01381 Helix-turn-helix AS53_4477 PF02557 D-alanyl-D-alanine carboxypeptidase AS53_4479 PF00395 S-layer homology domain AS53_4479 PF01520 N-acetylmuramoyl-L-alanine amidase AS53_448 PF00676 Dehydrogenase E1 component AS53_4482 PF00440 Bacterial regulatory proteins, tetR family AS53_4485 PF00563 EAL domain AS53_4485 PF00990 Diguanylate cyclase, GGDEF domain AS53_4485 PF03707 Bacterial signalling protein N terminal repeat AS53_4486 PF13302 Acetyltransferase (GNAT) domain AS53_4488 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_4489 PF00581 Rhodanese-like domain AS53_4492 PF00005 ABC transporter AS53_4497 PF02770 Acyl-CoA dehydrogenase, middle domain AS53_4497 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS53_4497 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS53_4498 PF00289 Biotin carboxylase, N-terminal domain AS53_4498 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS53_4498 PF02785 Biotin carboxylase C-terminal domain AS53_4499 PF00364 Biotin-requiring enzyme AS53_450 PF01327 Polypeptide deformylase AS53_4500 PF00682 HMGL-like AS53_4501 PF00378 Enoyl-CoA hydratase/isomerase AS53_4502 PF01039 Carboxyl transferase domain AS53_4503 PF13193 AMP-binding enzyme C-terminal domain AS53_4503 PF00501 AMP-binding enzyme AS53_4503 PF16177 Acetyl-coenzyme A synthetase N-terminus AS53_4505 PF00583 Acetyltransferase (GNAT) family AS53_4506 PF00485 Phosphoribulokinase / Uridine kinase family AS53_4508 PF05163 DinB family AS53_4509 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_4509 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_4510 PF00512 His Kinase A (phospho-acceptor) domain AS53_4510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_4511 PF00072 Response regulator receiver domain AS53_4511 PF00486 Transcriptional regulatory protein, C terminal AS53_4512 PF01966 HD domain AS53_4513 PF13021 Domain of unknown function (DUF3885) AS53_4514 PF01048 Phosphorylase superfamily AS53_4518 PF01447 Thermolysin metallopeptidase, catalytic domain AS53_4518 PF03413 Peptidase propeptide and YPEB domain AS53_4518 PF07504 Fungalysin/Thermolysin Propeptide Motif AS53_4518 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS53_4519 PF01447 Thermolysin metallopeptidase, catalytic domain AS53_4519 PF07504 Fungalysin/Thermolysin Propeptide Motif AS53_4519 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS53_4519 PF03413 Peptidase propeptide and YPEB domain AS53_4523 PF17755 UvrA DNA-binding domain AS53_4523 PF17760 UvrA interaction domain AS53_4523 PF17760 UvrA interaction domain AS53_4523 PF17755 UvrA DNA-binding domain AS53_4526 PF00144 Beta-lactamase AS53_4527 PF00376 MerR family regulatory protein AS53_4527 PF09278 MerR, DNA binding AS53_4528 PF07690 Major Facilitator Superfamily AS53_453 PF17770 Ribonuclease J C-terminal domain AS53_453 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS53_453 PF00753 Metallo-beta-lactamase superfamily AS53_4532 PF01636 Phosphotransferase enzyme family AS53_4533 PF12833 Helix-turn-helix domain AS53_4536 PF00155 Aminotransferase class I and II AS53_4536 PF00392 Bacterial regulatory proteins, gntR family AS53_4538 PF08240 Alcohol dehydrogenase GroES-like domain AS53_4538 PF00107 Zinc-binding dehydrogenase AS53_454 PF02080 TrkA-C domain AS53_454 PF02254 TrkA-N domain AS53_4541 PF01225 Mur ligase family, catalytic domain AS53_4541 PF02875 Mur ligase family, glutamate ligase domain AS53_4541 PF08245 Mur ligase middle domain AS53_4542 PF08245 Mur ligase middle domain AS53_4542 PF02875 Mur ligase family, glutamate ligase domain AS53_4542 PF01225 Mur ligase family, catalytic domain AS53_4545 PF07486 Cell Wall Hydrolase AS53_4547 PF00072 Response regulator receiver domain AS53_4547 PF00486 Transcriptional regulatory protein, C terminal AS53_4549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_4554 PF00005 ABC transporter AS53_4555 PF02687 FtsX-like permease family AS53_4556 PF02687 FtsX-like permease family AS53_456 PF01546 Peptidase family M20/M25/M40 AS53_456 PF07687 Peptidase dimerisation domain AS53_4560 PF03447 Homoserine dehydrogenase, NAD binding domain AS53_4560 PF01842 ACT domain AS53_4560 PF00742 Homoserine dehydrogenase AS53_4561 PF00155 Aminotransferase class I and II AS53_4561 PF00392 Bacterial regulatory proteins, gntR family AS53_4562 PF07478 D-ala D-ala ligase C-terminus AS53_4562 PF01820 D-ala D-ala ligase N-terminus AS53_4563 PF03070 TENA/THI-4/PQQC family AS53_457 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AS53_457 PF00132 Bacterial transferase hexapeptide (six repeats) AS53_457 PF14602 Hexapeptide repeat of succinyl-transferase AS53_4579 PF00067 Cytochrome P450 AS53_458 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_458 PF03466 LysR substrate binding domain AS53_4581 PF00132 Bacterial transferase hexapeptide (six repeats) AS53_4582 PF07561 Domain of Unknown Function (DUF1540) AS53_4584 PF00067 Cytochrome P450 AS53_4588 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_4588 PF00512 His Kinase A (phospho-acceptor) domain AS53_4588 PF00989 PAS fold AS53_4588 PF13188 PAS domain AS53_4588 PF13426 PAS domain AS53_4590 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AS53_4591 PF01177 Asp/Glu/Hydantoin racemase AS53_4592 PF07155 ECF-type riboflavin transporter, S component AS53_4593 PF12558 ATP-binding cassette cobalt transporter AS53_4593 PF00005 ABC transporter AS53_4596 PF00512 His Kinase A (phospho-acceptor) domain AS53_4596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_4599 PF08240 Alcohol dehydrogenase GroES-like domain AS53_4599 PF00107 Zinc-binding dehydrogenase AS53_4602 PF00144 Beta-lactamase AS53_4602 PF11954 Domain of unknown function (DUF3471) AS53_4608 PF01965 DJ-1/PfpI family AS53_461 PF04308 Ribonuclease H-like AS53_4611 PF00144 Beta-lactamase AS53_4613 PF07690 Major Facilitator Superfamily AS53_4617 PF03009 Glycerophosphoryl diester phosphodiesterase family AS53_4620 PF00155 Aminotransferase class I and II AS53_4620 PF00392 Bacterial regulatory proteins, gntR family AS53_4621 PF00392 Bacterial regulatory proteins, gntR family AS53_4621 PF00155 Aminotransferase class I and II AS53_4622 PF00892 EamA-like transporter family AS53_4623 PF01270 Glycosyl hydrolases family 8 AS53_4625 PF00293 NUDIX domain AS53_4629 PF07690 Major Facilitator Superfamily AS53_463 PF08796 Protein of unknown function (DUF1797) AS53_4631 PF00293 NUDIX domain AS53_4631 PF09297 NADH pyrophosphatase zinc ribbon domain AS53_4632 PF00712 DNA polymerase III beta subunit, N-terminal domain AS53_4632 PF02768 DNA polymerase III beta subunit, C-terminal domain AS53_4632 PF02767 DNA polymerase III beta subunit, central domain AS53_4633 PF00293 NUDIX domain AS53_4636 PF12706 Beta-lactamase superfamily domain AS53_4640 PF09234 Domain of unknown function (DUF1963) AS53_4646 PF01734 Patatin-like phospholipase AS53_4647 PF08000 Bacterial PH domain AS53_4649 PF12867 DinB superfamily AS53_4652 PF02673 Bacitracin resistance protein BacA AS53_4654 PF01541 GIY-YIG catalytic domain AS53_466 PF10388 EAL-domain associated signalling protein domain AS53_466 PF00563 EAL domain AS53_4662 PF01266 FAD dependent oxidoreductase AS53_4667 PF13419 Haloacid dehalogenase-like hydrolase AS53_4670 PF07859 alpha/beta hydrolase fold AS53_4672 PF00282 Pyridoxal-dependent decarboxylase conserved domain AS53_4673 PF00501 AMP-binding enzyme AS53_4673 PF00550 Phosphopantetheine attachment site AS53_4673 PF00668 Condensation domain AS53_4673 PF13193 AMP-binding enzyme C-terminal domain AS53_4675 PF03714 Bacterial pullanase-associated domain AS53_4675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS53_4675 PF00128 Alpha amylase, catalytic domain AS53_4676 PF01447 Thermolysin metallopeptidase, catalytic domain AS53_4676 PF03413 Peptidase propeptide and YPEB domain AS53_4676 PF07504 Fungalysin/Thermolysin Propeptide Motif AS53_4676 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS53_468 PF00149 Calcineurin-like phosphoesterase AS53_468 PF10518 TAT (twin-arginine translocation) pathway signal sequence AS53_4680 PF00344 SecY translocase AS53_4681 PF11638 DnaA N-terminal domain AS53_4681 PF00308 Bacterial dnaA protein AS53_4681 PF08299 Bacterial dnaA protein helix-turn-helix AS53_4682 PF00892 EamA-like transporter family AS53_4683 PF00392 Bacterial regulatory proteins, gntR family AS53_4683 PF00155 Aminotransferase class I and II AS53_4684 PF00561 alpha/beta hydrolase fold AS53_4689 PF06081 Aromatic acid exporter family member 1 AS53_4692 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AS53_4693 PF14620 YpeB sporulation AS53_4693 PF03413 Peptidase propeptide and YPEB domain AS53_4694 PF07486 Cell Wall Hydrolase AS53_4694 PF01471 Putative peptidoglycan binding domain AS53_4697 PF03301 Tryptophan 2,3-dioxygenase AS53_4698 PF04199 Putative cyclase AS53_4699 PF00266 Aminotransferase class-V AS53_470 PF02503 Polyphosphate kinase middle domain AS53_470 PF13090 Polyphosphate kinase C-terminal domain 2 AS53_470 PF17941 Polyphosphate kinase C-terminal domain 1 AS53_470 PF13089 Polyphosphate kinase N-terminal domain AS53_4700 PF08359 YsiA-like protein, C-terminal region AS53_4700 PF00440 Bacterial regulatory proteins, tetR family AS53_4701 PF00293 NUDIX domain AS53_4701 PF13344 Haloacid dehalogenase-like hydrolase AS53_4706 PF02954 Bacterial regulatory protein, Fis family AS53_4706 PF00158 Sigma-54 interaction domain AS53_4706 PF01590 GAF domain AS53_4709 PF13302 Acetyltransferase (GNAT) domain AS53_471 PF02541 Ppx/GppA phosphatase family AS53_4710 PF00455 DeoR C terminal sensor domain AS53_4710 PF08220 DeoR-like helix-turn-helix domain AS53_4713 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_4713 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS53_4713 PF00403 Heavy-metal-associated domain AS53_4714 PF02082 Transcriptional regulator AS53_4718 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_4718 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS53_4719 PF02817 e3 binding domain AS53_4719 PF00364 Biotin-requiring enzyme AS53_4719 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS53_472 PF14177 YkyB-like protein AS53_4720 PF02780 Transketolase, C-terminal domain AS53_4720 PF02779 Transketolase, pyrimidine binding domain AS53_4721 PF00676 Dehydrogenase E1 component AS53_4723 PF00106 short chain dehydrogenase AS53_4724 PF04229 GrpB protein AS53_4724 PF13673 Acetyltransferase (GNAT) domain AS53_4730 PF00528 Binding-protein-dependent transport system inner membrane component AS53_4731 PF00571 CBS domain AS53_4731 PF00005 ABC transporter AS53_4732 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AS53_4733 PF00574 Clp protease AS53_4736 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AS53_4737 PF13673 Acetyltransferase (GNAT) domain AS53_4738 PF18416 N-acetylglucosamine binding protein domain 2 AS53_4738 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AS53_4742 PF10990 Protein of unknown function (DUF2809) AS53_4747 PF00753 Metallo-beta-lactamase superfamily AS53_4747 PF13567 Domain of unknown function (DUF4131) AS53_4747 PF03772 Competence protein AS53_4758 PF13538 UvrD-like helicase C-terminal domain AS53_4761 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AS53_4762 PF09382 RQC domain AS53_4762 PF00270 DEAD/DEAH box helicase AS53_4762 PF16124 RecQ zinc-binding AS53_4762 PF00271 Helicase conserved C-terminal domain AS53_4762 PF00570 HRDC domain AS53_477 PF07690 Major Facilitator Superfamily AS53_4770 PF02833 DHHA2 domain AS53_4770 PF01368 DHH family AS53_4771 PF18416 N-acetylglucosamine binding protein domain 2 AS53_4771 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AS53_4773 PF02627 Carboxymuconolactone decarboxylase family AS53_4774 PF01235 Sodium:alanine symporter family AS53_4775 PF00171 Aldehyde dehydrogenase family AS53_4776 PF00701 Dihydrodipicolinate synthetase family AS53_4777 PF05544 Proline racemase AS53_4778 PF05544 Proline racemase AS53_4779 PF01266 FAD dependent oxidoreductase AS53_4780 PF02954 Bacterial regulatory protein, Fis family AS53_4780 PF13188 PAS domain AS53_4780 PF00158 Sigma-54 interaction domain AS53_4782 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_4782 PF04324 BFD-like [2Fe-2S] binding domain AS53_4785 PF08876 Domain of unknown function (DUF1836) AS53_4786 PF09335 SNARE associated Golgi protein AS53_4789 PF04914 DltD protein AS53_479 PF01717 Cobalamin-independent synthase, Catalytic domain AS53_479 PF08267 Cobalamin-independent synthase, N-terminal domain AS53_4790 PF13673 Acetyltransferase (GNAT) domain AS53_4790 PF00117 Glutamine amidotransferase class-I AS53_4790 PF00958 GMP synthase C terminal domain AS53_4790 PF03352 Methyladenine glycosylase AS53_4790 PF13302 Acetyltransferase (GNAT) domain AS53_4791 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_4792 PF00877 NlpC/P60 family AS53_4792 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AS53_4793 PF13378 Enolase C-terminal domain-like AS53_4793 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS53_4796 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS53_4801 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AS53_4801 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AS53_4802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_4802 PF00989 PAS fold AS53_4802 PF16736 Single Cache-like AS53_4802 PF00512 His Kinase A (phospho-acceptor) domain AS53_4803 PF00072 Response regulator receiver domain AS53_4803 PF00486 Transcriptional regulatory protein, C terminal AS53_4807 PF01048 Phosphorylase superfamily AS53_4809 PF03808 Glycosyl transferase WecB/TagA/CpsF family AS53_481 PF14040 Deoxyribonuclease NucA/NucB AS53_4810 PF01432 Peptidase family M3 AS53_4810 PF08439 Oligopeptidase F AS53_4813 PF02645 Uncharacterised protein, DegV family COG1307 AS53_4817 PF07690 Major Facilitator Superfamily AS53_4819 PF04519 Polymer-forming cytoskeletal AS53_4820 PF13171 Protein of unknown function (DUF4004) AS53_4821 PF12793 Sugar transport-related sRNA regulator N-term AS53_4821 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_4822 PF07690 Major Facilitator Superfamily AS53_4826 PF04226 Transglycosylase associated protein AS53_4827 PF01156 Inosine-uridine preferring nucleoside hydrolase AS53_4829 PF08241 Methyltransferase domain AS53_483 PF00512 His Kinase A (phospho-acceptor) domain AS53_483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_4835 PF00155 Aminotransferase class I and II AS53_4836 PF07977 FabA-like domain AS53_4837 PF03630 Fumble AS53_4841 PF00005 ABC transporter AS53_485 PF00155 Aminotransferase class I and II AS53_4850 PF01594 AI-2E family transporter AS53_4852 PF00296 Luciferase-like monooxygenase AS53_4853 PF00528 Binding-protein-dependent transport system inner membrane component AS53_4854 PF09084 NMT1/THI5 like AS53_4855 PF00005 ABC transporter AS53_486 PF00356 Bacterial regulatory proteins, lacI family AS53_486 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS53_4863 PF02522 Aminoglycoside 3-N-acetyltransferase AS53_4868 PF13536 Putative multidrug resistance efflux transporter AS53_4869 PF12867 DinB superfamily AS53_487 PF00528 Binding-protein-dependent transport system inner membrane component AS53_4873 PF08713 DNA alkylation repair enzyme AS53_4875 PF01522 Polysaccharide deacetylase AS53_4877 PF03741 Integral membrane protein TerC family AS53_4878 PF00884 Sulfatase AS53_4879 PF00005 ABC transporter AS53_4879 PF12848 ABC transporter AS53_488 PF00528 Binding-protein-dependent transport system inner membrane component AS53_4881 PF03176 MMPL family AS53_4882 PF03176 MMPL family AS53_4883 PF00440 Bacterial regulatory proteins, tetR family AS53_4883 PF16295 Tetracyclin repressor-like, C-terminal domain AS53_4885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS53_4886 PF01842 ACT domain AS53_4886 PF02153 Prephenate dehydrogenase AS53_4887 PF00155 Aminotransferase class I and II AS53_4888 PF01264 Chorismate synthase AS53_4889 PF00793 DAHP synthetase I family AS53_4889 PF01817 Chorismate mutase type II AS53_489 PF13416 Bacterial extracellular solute-binding protein AS53_4894 PF01636 Phosphotransferase enzyme family AS53_4897 PF06725 3D domain AS53_4897 PF01476 LysM domain AS53_4899 PF04542 Sigma-70 region 2 AS53_4899 PF08281 Sigma-70, region 4 AS53_490 PF02903 Alpha amylase, N-terminal ig-like domain AS53_490 PF16657 Maltogenic Amylase, C-terminal domain AS53_490 PF00128 Alpha amylase, catalytic domain AS53_4904 PF06039 Malate:quinone oxidoreductase (Mqo) AS53_4905 PF13407 Periplasmic binding protein domain AS53_4906 PF02653 Branched-chain amino acid transport system / permease component AS53_4907 PF02653 Branched-chain amino acid transport system / permease component AS53_4908 PF00005 ABC transporter AS53_4909 PF04198 Putative sugar-binding domain AS53_4909 PF00325 Bacterial regulatory proteins, crp family AS53_491 PF00128 Alpha amylase, catalytic domain AS53_491 PF16657 Maltogenic Amylase, C-terminal domain AS53_4910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_4910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_4911 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_4911 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_4913 PF01791 DeoC/LacD family aldolase AS53_4917 PF03992 Antibiotic biosynthesis monooxygenase AS53_492 PF03459 TOBE domain AS53_492 PF00005 ABC transporter AS53_492 PF17912 MalK OB fold domain AS53_4921 PF01773 Na+ dependent nucleoside transporter N-terminus AS53_4921 PF07662 Na+ dependent nucleoside transporter C-terminus AS53_4922 PF00171 Aldehyde dehydrogenase family AS53_4923 PF01472 PUA domain AS53_4923 PF00696 Amino acid kinase family AS53_4924 PF03807 NADP oxidoreductase coenzyme F420-dependent AS53_4924 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS53_4925 PF01546 Peptidase family M20/M25/M40 AS53_4926 PF09339 IclR helix-turn-helix domain AS53_4926 PF01614 Bacterial transcriptional regulator AS53_4927 PF00324 Amino acid permease AS53_4928 PF01139 tRNA-splicing ligase RtcB AS53_4929 PF00487 Fatty acid desaturase AS53_4930 PF00245 Alkaline phosphatase AS53_4931 PF11188 Protein of unknown function (DUF2975) AS53_4932 PF13443 Cro/C1-type HTH DNA-binding domain AS53_4935 PF10086 YhfC intramembrane metalloprotease AS53_4937 PF00072 Response regulator receiver domain AS53_4937 PF04397 LytTr DNA-binding domain AS53_4939 PF13302 Acetyltransferase (GNAT) domain AS53_4940 PF12681 Glyoxalase-like domain AS53_4944 PF07726 ATPase family associated with various cellular activities (AAA) AS53_4944 PF17863 AAA lid domain AS53_4947 PF07690 Major Facilitator Superfamily AS53_4949 PF00535 Glycosyl transferase family 2 AS53_4952 PF00535 Glycosyl transferase family 2 AS53_4954 PF00535 Glycosyl transferase family 2 AS53_4956 PF00202 Aminotransferase class-III AS53_4957 PF00199 Catalase AS53_4957 PF06628 Catalase-related immune-responsive AS53_4959 PF13382 Adenine deaminase C-terminal domain AS53_4959 PF01979 Amidohydrolase family AS53_4960 PF00144 Beta-lactamase AS53_4965 PF17863 AAA lid domain AS53_4965 PF07726 ATPase family associated with various cellular activities (AAA) AS53_4967 PF00881 Nitroreductase family AS53_4968 PF01047 MarR family AS53_4969 PF00679 Elongation factor G C-terminus AS53_4969 PF03764 Elongation factor G, domain IV AS53_4969 PF00009 Elongation factor Tu GTP binding domain AS53_4969 PF14492 Elongation Factor G, domain II AS53_4971 PF00293 NUDIX domain AS53_4974 PF00005 ABC transporter AS53_4975 PF00392 Bacterial regulatory proteins, gntR family AS53_4977 PF00005 ABC transporter AS53_4977 PF02687 FtsX-like permease family AS53_4977 PF12704 MacB-like periplasmic core domain AS53_4982 PF12833 Helix-turn-helix domain AS53_4983 PF00583 Acetyltransferase (GNAT) family AS53_4986 PF00892 EamA-like transporter family AS53_4987 PF00155 Aminotransferase class I and II AS53_4987 PF00392 Bacterial regulatory proteins, gntR family AS53_4988 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AS53_4989 PF13031 Protein of unknown function (DUF3892) AS53_4991 PF00672 HAMP domain AS53_4991 PF00512 His Kinase A (phospho-acceptor) domain AS53_4992 PF00486 Transcriptional regulatory protein, C terminal AS53_4992 PF00072 Response regulator receiver domain AS53_4993 PF00561 alpha/beta hydrolase fold AS53_4999 PF01925 Sulfite exporter TauE/SafE AS53_5 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_5 PF03466 LysR substrate binding domain AS53_500 PF00108 Thiolase, N-terminal domain AS53_500 PF02803 Thiolase, C-terminal domain AS53_5000 PF13302 Acetyltransferase (GNAT) domain AS53_5001 PF00324 Amino acid permease AS53_5003 PF08713 DNA alkylation repair enzyme AS53_5004 PF10898 Protein of unknown function (DUF2716) AS53_5008 PF00293 NUDIX domain AS53_501 PF00293 NUDIX domain AS53_5010 PF10502 Signal peptidase, peptidase S26 AS53_5013 PF02146 Sir2 family AS53_5014 PF01470 Pyroglutamyl peptidase AS53_5018 PF03746 LamB/YcsF family AS53_5019 PF02626 Carboxyltransferase domain, subdomain A and B AS53_5020 PF02682 Carboxyltransferase domain, subdomain C and D AS53_5021 PF01614 Bacterial transcriptional regulator AS53_5021 PF09339 IclR helix-turn-helix domain AS53_5022 PF10502 Signal peptidase, peptidase S26 AS53_5023 PF03932 CutC family AS53_5024 PF07454 Stage II sporulation protein P (SpoIIP) AS53_5027 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS53_5027 PF02770 Acyl-CoA dehydrogenase, middle domain AS53_5027 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AS53_5034 PF02915 Rubrerythrin AS53_5036 PF00440 Bacterial regulatory proteins, tetR family AS53_5037 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AS53_5037 PF00391 PEP-utilising enzyme, mobile domain AS53_5038 PF00753 Metallo-beta-lactamase superfamily AS53_5041 PF07875 Coat F domain AS53_5043 PF08892 YqcI/YcgG family AS53_5044 PF01810 LysE type translocator AS53_5045 PF00324 Amino acid permease AS53_5046 PF00324 Amino acid permease AS53_5048 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS53_5049 PF10710 Protein of unknown function (DUF2512) AS53_5050 PF11553 Protein of unknown function (DUF3231) AS53_5051 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS53_5052 PF08240 Alcohol dehydrogenase GroES-like domain AS53_5052 PF13823 Alcohol dehydrogenase GroES-associated AS53_5052 PF00107 Zinc-binding dehydrogenase AS53_5055 PF00206 Lyase AS53_5055 PF10415 Fumarase C C-terminus AS53_5056 PF17763 Glutaminase/Asparaginase C-terminal domain AS53_5056 PF00710 Asparaginase, N-terminal AS53_5057 PF01381 Helix-turn-helix AS53_5059 PF02151 UvrB/uvrC motif AS53_5059 PF12826 Helix-hairpin-helix motif AS53_5059 PF08459 UvrC Helix-hairpin-helix N-terminal AS53_5059 PF01541 GIY-YIG catalytic domain AS53_5060 PF13520 Amino acid permease AS53_5061 PF05525 Branched-chain amino acid transport protein AS53_5062 PF03807 NADP oxidoreductase coenzyme F420-dependent AS53_5062 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS53_5063 PF13564 DoxX-like family AS53_5064 PF00390 Malic enzyme, N-terminal domain AS53_5064 PF03949 Malic enzyme, NAD binding domain AS53_5066 PF05504 Spore germination B3/ GerAC like, C-terminal AS53_5067 PF05504 Spore germination B3/ GerAC like, C-terminal AS53_5068 PF03845 Spore germination protein AS53_5069 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_507 PF03551 Transcriptional regulator PadR-like family AS53_5070 PF08664 YcbB domain AS53_5070 PF00072 Response regulator receiver domain AS53_5071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_5072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_5073 PF04960 Glutaminase AS53_5075 PF01235 Sodium:alanine symporter family AS53_5081 PF17936 Bacterial Ig domain AS53_5081 PF00149 Calcineurin-like phosphoesterase AS53_5081 PF02872 5'-nucleotidase, C-terminal domain AS53_5082 PF06628 Catalase-related immune-responsive AS53_5082 PF00199 Catalase AS53_5083 PF00561 alpha/beta hydrolase fold AS53_5084 PF00857 Isochorismatase family AS53_5087 PF01979 Amidohydrolase family AS53_5089 PF03466 LysR substrate binding domain AS53_5089 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_5090 PF01047 MarR family AS53_5091 PF01544 CorA-like Mg2+ transporter protein AS53_5092 PF01544 CorA-like Mg2+ transporter protein AS53_5095 PF11181 Heat induced stress protein YflT AS53_5098 PF03073 TspO/MBR family AS53_5099 PF00875 DNA photolyase AS53_5099 PF03441 FAD binding domain of DNA photolyase AS53_5101 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AS53_5102 PF00361 Proton-conducting membrane transporter AS53_5102 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AS53_5103 PF10057 Uncharacterized conserved protein (DUF2294) AS53_5105 PF01040 UbiA prenyltransferase family AS53_5106 PF00561 alpha/beta hydrolase fold AS53_5107 PF01297 Zinc-uptake complex component A periplasmic AS53_5108 PF00950 ABC 3 transport family AS53_5109 PF00005 ABC transporter AS53_511 PF01636 Phosphotransferase enzyme family AS53_5114 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS53_5115 PF01758 Sodium Bile acid symporter family AS53_5116 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_5117 PF01022 Bacterial regulatory protein, arsR family AS53_512 PF00795 Carbon-nitrogen hydrolase AS53_5121 PF00012 Hsp70 protein AS53_5124 PF01037 Lrp/AsnC ligand binding domain AS53_5127 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_5129 PF01609 Transposase DDE domain AS53_513 PF00155 Aminotransferase class I and II AS53_5134 PF00144 Beta-lactamase AS53_5137 PF12802 MarR family AS53_5138 PF00067 Cytochrome P450 AS53_5138 PF00667 FAD binding domain AS53_5138 PF00175 Oxidoreductase NAD-binding domain AS53_5138 PF00258 Flavodoxin AS53_5139 PF07690 Major Facilitator Superfamily AS53_514 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AS53_514 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AS53_5144 PF00072 Response regulator receiver domain AS53_5144 PF00486 Transcriptional regulatory protein, C terminal AS53_5145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_5145 PF00672 HAMP domain AS53_5145 PF00512 His Kinase A (phospho-acceptor) domain AS53_5150 PF00291 Pyridoxal-phosphate dependent enzyme AS53_5154 PF00144 Beta-lactamase AS53_5156 PF01381 Helix-turn-helix AS53_5159 PF00753 Metallo-beta-lactamase superfamily AS53_516 PF00596 Class II Aldolase and Adducin N-terminal domain AS53_5160 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AS53_5162 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS53_5162 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS53_5163 PF04072 Leucine carboxyl methyltransferase AS53_5166 PF00005 ABC transporter AS53_5167 PF02687 FtsX-like permease family AS53_517 PF03079 ARD/ARD' family AS53_5170 PF00672 HAMP domain AS53_5170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_5170 PF00512 His Kinase A (phospho-acceptor) domain AS53_5171 PF00072 Response regulator receiver domain AS53_5171 PF00486 Transcriptional regulatory protein, C terminal AS53_5173 PF01047 MarR family AS53_5174 PF00583 Acetyltransferase (GNAT) family AS53_5175 PF04299 Putative FMN-binding domain AS53_5176 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_5176 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_5177 PF07690 Major Facilitator Superfamily AS53_5178 PF02589 LUD domain AS53_5179 PF13183 4Fe-4S dicluster domain AS53_5179 PF11870 Domain of unknown function (DUF3390) AS53_5179 PF02589 LUD domain AS53_5180 PF02754 Cysteine-rich domain AS53_5181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_5181 PF03466 LysR substrate binding domain AS53_5183 PF02016 LD-carboxypeptidase N-terminal domain AS53_5183 PF17676 LD-carboxypeptidase C-terminal domain AS53_5187 PF07690 Major Facilitator Superfamily AS53_5188 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS53_5188 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS53_5189 PF05116 Sucrose-6F-phosphate phosphohydrolase AS53_5190 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AS53_5191 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AS53_5192 PF00356 Bacterial regulatory proteins, lacI family AS53_5193 PF18801 response regulator aspartate phosphatase H, N terminal AS53_5197 PF11798 IMS family HHH motif AS53_5197 PF00817 impB/mucB/samB family AS53_5197 PF11799 impB/mucB/samB family C-terminal domain AS53_520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS53_520 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS53_5200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS53_5200 PF00672 HAMP domain AS53_5200 PF02743 Cache domain AS53_5204 PF01554 MatE AS53_5205 PF08453 Peptidase family M9 N-terminal AS53_5205 PF18496 Collagenase G catalytic helper subdomain AS53_5205 PF01752 Collagenase AS53_5206 PF01609 Transposase DDE domain AS53_5207 PF02661 Fic/DOC family AS53_5208 PF07690 Major Facilitator Superfamily AS53_5209 PF00440 Bacterial regulatory proteins, tetR family AS53_5209 PF16859 Tetracyclin repressor-like, C-terminal domain AS53_521 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS53_521 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS53_5211 PF01022 Bacterial regulatory protein, arsR family AS53_5213 PF03313 Serine dehydratase alpha chain AS53_5214 PF01842 ACT domain AS53_5214 PF03315 Serine dehydratase beta chain AS53_5215 PF00202 Aminotransferase class-III AS53_5216 PF17788 HypF Kae1-like domain AS53_5216 PF00708 Acylphosphatase AS53_5216 PF01300 Telomere recombination AS53_5216 PF07503 HypF finger AS53_5217 PF00586 AIR synthase related protein, N-terminal domain AS53_5217 PF02769 AIR synthase related protein, C-terminal domain AS53_5218 PF00857 Isochorismatase family AS53_5219 PF01037 Lrp/AsnC ligand binding domain AS53_522 PF00990 Diguanylate cyclase, GGDEF domain AS53_5220 PF13520 Amino acid permease AS53_5223 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS53_5223 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS53_5223 PF01842 ACT domain AS53_5224 PF00266 Aminotransferase class-V AS53_5227 PF08281 Sigma-70, region 4 AS53_5227 PF04542 Sigma-70 region 2 AS53_523 PF00881 Nitroreductase family AS53_5230 PF07883 Cupin domain AS53_5231 PF01497 Periplasmic binding protein AS53_5231 PF12833 Helix-turn-helix domain AS53_5232 PF01804 Penicillin amidase AS53_5234 PF00395 S-layer homology domain AS53_5241 PF14044 NETI protein AS53_5242 PF07690 Major Facilitator Superfamily AS53_5243 PF12697 Alpha/beta hydrolase family AS53_5244 PF01047 MarR family AS53_5245 PF07690 Major Facilitator Superfamily AS53_5248 PF12679 ABC-2 family transporter protein AS53_5249 PF00005 ABC transporter AS53_5249 PF13732 Domain of unknown function (DUF4162) AS53_5250 PF13396 Phospholipase_D-nuclease N-terminal AS53_5252 PF17314 Family of unknown function (DUF5360) AS53_5253 PF00893 Small Multidrug Resistance protein AS53_5254 PF00440 Bacterial regulatory proteins, tetR family AS53_5255 PF17440 Thiol-activated cytolysin beta sandwich domain AS53_5255 PF01289 Thiol-activated cytolysin AS53_5256 PF02667 Short chain fatty acid transporter AS53_5258 PF02525 Flavodoxin-like fold AS53_526 PF02896 PEP-utilising enzyme, TIM barrel domain AS53_526 PF00391 PEP-utilising enzyme, mobile domain AS53_526 PF05524 PEP-utilising enzyme, N-terminal AS53_5262 PF14256 YwiC-like protein AS53_5264 PF00005 ABC transporter AS53_5265 PF02361 Cobalt transport protein AS53_5268 PF03737 Aldolase/RraA AS53_5269 PF03606 C4-dicarboxylate anaerobic carrier AS53_527 PF00381 PTS HPr component phosphorylation site AS53_5270 PF04231 Endonuclease I AS53_5273 PF01381 Helix-turn-helix AS53_5274 PF02660 Glycerol-3-phosphate acyltransferase AS53_5275 PF04073 Aminoacyl-tRNA editing domain AS53_5276 PF13393 Histidyl-tRNA synthetase AS53_5276 PF03129 Anticodon binding domain AS53_5279 PF01638 HxlR-like helix-turn-helix AS53_528 PF02378 Phosphotransferase system, EIIC AS53_528 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS53_528 PF00367 phosphotransferase system, EIIB AS53_5280 PF00881 Nitroreductase family AS53_5282 PF00391 PEP-utilising enzyme, mobile domain AS53_5282 PF02887 Pyruvate kinase, alpha/beta domain AS53_5282 PF00224 Pyruvate kinase, barrel domain AS53_5286 PF00005 ABC transporter AS53_529 PF00874 PRD domain AS53_529 PF03123 CAT RNA binding domain AS53_5291 PF13419 Haloacid dehalogenase-like hydrolase AS53_5296 PF13344 Haloacid dehalogenase-like hydrolase AS53_5296 PF00293 NUDIX domain AS53_5298 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_5299 PF00480 ROK family AS53_5300 PF07690 Major Facilitator Superfamily AS53_5301 PF12464 Maltose acetyltransferase AS53_5301 PF14602 Hexapeptide repeat of succinyl-transferase AS53_5303 PF00005 ABC transporter AS53_5305 PF00579 tRNA synthetases class I (W and Y) AS53_5306 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AS53_5306 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AS53_5306 PF13288 DXP reductoisomerase C-terminal domain AS53_5307 PF01594 AI-2E family transporter AS53_5311 PF08241 Methyltransferase domain AS53_5313 PF07690 Major Facilitator Superfamily AS53_5317 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_5319 PF03471 Transporter associated domain AS53_5319 PF00571 CBS domain AS53_5319 PF01595 Cyclin M transmembrane N-terminal domain AS53_532 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AS53_5320 PF13411 MerR HTH family regulatory protein AS53_5321 PF00892 EamA-like transporter family AS53_5322 PF00805 Pentapeptide repeats (8 copies) AS53_5323 PF06906 Protein of unknown function (DUF1272) AS53_5324 PF10282 Lactonase, 7-bladed beta-propeller AS53_5325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS53_5325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS53_5326 PF02447 GntP family permease AS53_5327 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS53_5328 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS53_5328 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS53_5329 PF02780 Transketolase, C-terminal domain AS53_5329 PF00456 Transketolase, thiamine diphosphate binding domain AS53_5329 PF02779 Transketolase, pyrimidine binding domain AS53_533 PF01979 Amidohydrolase family AS53_5330 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AS53_5330 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AS53_5331 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AS53_5331 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AS53_5332 PF00107 Zinc-binding dehydrogenase AS53_5332 PF08240 Alcohol dehydrogenase GroES-like domain AS53_5333 PF00296 Luciferase-like monooxygenase AS53_5335 PF14765 Polyketide synthase dehydratase AS53_5335 PF16197 Ketoacyl-synthetase C-terminal extension AS53_5335 PF00550 Phosphopantetheine attachment site AS53_5335 PF00107 Zinc-binding dehydrogenase AS53_5335 PF02801 Beta-ketoacyl synthase, C-terminal domain AS53_5335 PF08240 Alcohol dehydrogenase GroES-like domain AS53_5335 PF00109 Beta-ketoacyl synthase, N-terminal domain AS53_5335 PF08659 KR domain AS53_5335 PF00698 Acyl transferase domain AS53_5336 PF00106 short chain dehydrogenase AS53_5337 PF01447 Thermolysin metallopeptidase, catalytic domain AS53_5337 PF03413 Peptidase propeptide and YPEB domain AS53_5337 PF07504 Fungalysin/Thermolysin Propeptide Motif AS53_5337 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS53_5341 PF00248 Aldo/keto reductase family AS53_5342 PF07690 Major Facilitator Superfamily AS53_5344 PF03928 Haem-degrading AS53_5345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_535 PF04079 Segregation and condensation complex subunit ScpB AS53_5351 PF03960 ArsC family AS53_5352 PF01638 HxlR-like helix-turn-helix AS53_5353 PF00392 Bacterial regulatory proteins, gntR family AS53_5353 PF07702 UTRA domain AS53_5354 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS53_5354 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS53_5357 PF01638 HxlR-like helix-turn-helix AS53_5358 PF01638 HxlR-like helix-turn-helix AS53_5359 PF00248 Aldo/keto reductase family AS53_536 PF02616 Segregation and condensation protein ScpA AS53_5365 PF02567 Phenazine biosynthesis-like protein AS53_5369 PF00501 AMP-binding enzyme AS53_5369 PF13193 AMP-binding enzyme C-terminal domain AS53_5371 PF02525 Flavodoxin-like fold AS53_5372 PF01638 HxlR-like helix-turn-helix AS53_5375 PF01022 Bacterial regulatory protein, arsR family AS53_5376 PF01522 Polysaccharide deacetylase AS53_5376 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AS53_5378 PF12791 Anti-sigma factor N-terminus AS53_5379 PF04542 Sigma-70 region 2 AS53_538 PF03745 Domain of unknown function (DUF309) AS53_5380 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AS53_5380 PF00535 Glycosyl transferase family 2 AS53_5382 PF00440 Bacterial regulatory proteins, tetR family AS53_5386 PF05656 Protein of unknown function (DUF805) AS53_5387 PF01061 ABC-2 type transporter AS53_5388 PF00005 ABC transporter AS53_5388 PF13732 Domain of unknown function (DUF4162) AS53_539 PF00583 Acetyltransferase (GNAT) family AS53_5391 PF03063 Prismane/CO dehydrogenase family AS53_5394 PF00753 Metallo-beta-lactamase superfamily AS53_5395 PF01183 Glycosyl hydrolases family 25 AS53_5395 PF01471 Putative peptidoglycan binding domain AS53_540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AS53_5400 PF00144 Beta-lactamase AS53_5408 PF00753 Metallo-beta-lactamase superfamily AS53_5409 PF08240 Alcohol dehydrogenase GroES-like domain AS53_5409 PF00107 Zinc-binding dehydrogenase AS53_541 PF06207 Protein of unknown function (DUF1002) AS53_5410 PF00324 Amino acid permease AS53_5411 PF07690 Major Facilitator Superfamily AS53_5416 PF02585 GlcNAc-PI de-N-acetylase AS53_5417 PF08830 Protein of unknown function (DUF1806) AS53_5418 PF03600 Citrate transporter AS53_5422 PF01497 Periplasmic binding protein AS53_5424 PF01032 FecCD transport family AS53_5425 PF01032 FecCD transport family AS53_5426 PF05675 Protein of unknown function (DUF817) AS53_5427 PF02567 Phenazine biosynthesis-like protein AS53_5428 PF13170 Protein of unknown function (DUF4003) AS53_543 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_5431 PF10901 Protein of unknown function (DUF2690) AS53_5433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_5433 PF03466 LysR substrate binding domain AS53_5434 PF08240 Alcohol dehydrogenase GroES-like domain AS53_5434 PF00107 Zinc-binding dehydrogenase AS53_5437 PF00488 MutS domain V AS53_5437 PF01713 Smr domain AS53_5439 PF00128 Alpha amylase, catalytic domain AS53_5439 PF09154 Domain of unknown function (DUF1939) AS53_544 PF14097 Stage V sporulation protein AE1 AS53_5440 PF00797 N-acetyltransferase AS53_5443 PF00144 Beta-lactamase AS53_5445 PF07690 Major Facilitator Superfamily AS53_5446 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS53_5446 PF03466 LysR substrate binding domain AS53_5449 PF03009 Glycerophosphoryl diester phosphodiesterase family AS53_545 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS53_5452 PF01494 FAD binding domain AS53_5453 PF01022 Bacterial regulatory protein, arsR family AS53_5454 PF00107 Zinc-binding dehydrogenase AS53_5454 PF08240 Alcohol dehydrogenase GroES-like domain AS53_5455 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AS53_5456 PF18801 response regulator aspartate phosphatase H, N terminal AS53_5459 PF04299 Putative FMN-binding domain AS53_546 PF07451 Stage V sporulation protein AD (SpoVAD) AS53_5460 PF04229 GrpB protein AS53_5462 PF01758 Sodium Bile acid symporter family AS53_5463 PF01565 FAD binding domain AS53_5463 PF02913 FAD linked oxidases, C-terminal domain AS53_5467 PF00132 Bacterial transferase hexapeptide (six repeats) AS53_5468 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AS53_547 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS53_5471 PF00378 Enoyl-CoA hydratase/isomerase AS53_5472 PF01752 Collagenase AS53_5472 PF18496 Collagenase G catalytic helper subdomain AS53_5472 PF08453 Peptidase family M9 N-terminal AS53_5473 PF02308 MgtC family AS53_5475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_5476 PF04294 VanW like protein AS53_5478 PF13037 Domain of unknown function (DUF3898) AS53_5478 PF13039 Protein of unknown function (DUF3900) AS53_548 PF13782 Stage V sporulation protein AB AS53_5482 PF00313 'Cold-shock' DNA-binding domain AS53_5484 PF00258 Flavodoxin AS53_5486 PF00293 NUDIX domain AS53_5488 PF00132 Bacterial transferase hexapeptide (six repeats) AS53_549 PF12164 Stage V sporulation protein AA AS53_5490 PF00106 short chain dehydrogenase AS53_5492 PF14698 Argininosuccinate lyase C-terminal AS53_5492 PF00206 Lyase AS53_5494 PF01156 Inosine-uridine preferring nucleoside hydrolase AS53_5495 PF00474 Sodium:solute symporter family AS53_5496 PF06196 Protein of unknown function (DUF997) AS53_5497 PF00171 Aldehyde dehydrogenase family AS53_5499 PF14151 YfhD-like protein AS53_5500 PF13249 Squalene-hopene cyclase N-terminal domain AS53_5500 PF13243 Squalene-hopene cyclase C-terminal domain AS53_5501 PF02681 Divergent PAP2 family AS53_5502 PF00892 EamA-like transporter family AS53_5503 PF06961 Protein of unknown function (DUF1294) AS53_5506 PF10609 NUBPL iron-transfer P-loop NTPase AS53_5508 PF02391 MoaE protein AS53_5509 PF00994 Probable molybdopterin binding domain AS53_5509 PF03454 MoeA C-terminal region (domain IV) AS53_5509 PF03453 MoeA N-terminal region (domain I and II) AS53_551 PF00209 Sodium:neurotransmitter symporter family AS53_5510 PF00899 ThiF family AS53_5511 PF01226 Formate/nitrite transporter AS53_5512 PF06463 Molybdenum Cofactor Synthesis C AS53_5512 PF04055 Radical SAM superfamily AS53_5513 PF02634 FdhD/NarQ family AS53_5514 PF10057 Uncharacterized conserved protein (DUF2294) AS53_5515 PF07849 Protein of unknown function (DUF1641) AS53_5516 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS53_5516 PF01568 Molydopterin dinucleotide binding domain AS53_5516 PF00384 Molybdopterin oxidoreductase AS53_5516 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AS53_5516 PF00037 4Fe-4S binding domain AS53_5517 PF00384 Molybdopterin oxidoreductase AS53_5517 PF01568 Molydopterin dinucleotide binding domain AS53_5517 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS53_5517 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AS53_5517 PF00037 4Fe-4S binding domain AS53_5519 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_552 PF04542 Sigma-70 region 2 AS53_552 PF04539 Sigma-70 region 3 AS53_552 PF04545 Sigma-70, region 4 AS53_5527 PF08241 Methyltransferase domain AS53_5528 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_5529 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_553 PF13581 Histidine kinase-like ATPase domain AS53_5530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_5531 PF00375 Sodium:dicarboxylate symporter family AS53_5532 PF03816 Cell envelope-related transcriptional attenuator domain AS53_5534 PF08281 Sigma-70, region 4 AS53_5534 PF04542 Sigma-70 region 2 AS53_5538 PF00005 ABC transporter AS53_5538 PF13732 Domain of unknown function (DUF4162) AS53_554 PF01740 STAS domain AS53_5540 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS53_5540 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS53_5541 PF00521 DNA gyrase/topoisomerase IV, subunit A AS53_5541 PF03989 DNA gyrase C-terminal domain, beta-propeller AS53_5542 PF00204 DNA gyrase B AS53_5542 PF01751 Toprim domain AS53_5542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_5542 PF00986 DNA gyrase B subunit, carboxyl terminus AS53_5543 PF13380 CoA binding domain AS53_5544 PF13180 PDZ domain AS53_5545 PF00072 Response regulator receiver domain AS53_5545 PF00486 Transcriptional regulatory protein, C terminal AS53_5546 PF04055 Radical SAM superfamily AS53_5547 PF03477 ATP cone domain AS53_5547 PF13597 Anaerobic ribonucleoside-triphosphate reductase AS53_5548 PF02660 Glycerol-3-phosphate acyltransferase AS53_5549 PF01521 Iron-sulphur cluster biosynthesis AS53_555 PF07943 Penicillin-binding protein 5, C-terminal domain AS53_555 PF00768 D-alanyl-D-alanine carboxypeptidase AS53_5550 PF03061 Thioesterase superfamily AS53_5551 PF00704 Glycosyl hydrolases family 18 AS53_5551 PF01476 LysM domain AS53_5553 PF08177 Small acid-soluble spore protein N family AS53_5554 PF13040 Fur-regulated basic protein B AS53_5555 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS53_5555 PF11490 DNA polymerase III polC-type N-terminus II AS53_5555 PF02811 PHP domain AS53_5555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS53_5555 PF14579 Helix-hairpin-helix motif AS53_5555 PF00929 Exonuclease AS53_5555 PF01336 OB-fold nucleic acid binding domain AS53_5556 PF00578 AhpC/TSA family AS53_5558 PF00005 ABC transporter AS53_5558 PF00664 ABC transporter transmembrane region AS53_5558 PF03412 Peptidase C39 family AS53_5559 PF00694 Aconitase C-terminal domain AS53_5559 PF00330 Aconitase family (aconitate hydratase) AS53_556 PF00392 Bacterial regulatory proteins, gntR family AS53_5561 PF01522 Polysaccharide deacetylase AS53_5564 PF07690 Major Facilitator Superfamily AS53_5566 PF02272 DHHA1 domain AS53_5566 PF01411 tRNA synthetases class II (A) AS53_5566 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS53_5567 PF00293 NUDIX domain AS53_5567 PF13344 Haloacid dehalogenase-like hydrolase AS53_5569 PF02803 Thiolase, C-terminal domain AS53_5569 PF00108 Thiolase, N-terminal domain AS53_557 PF00005 ABC transporter AS53_5570 PF13193 AMP-binding enzyme C-terminal domain AS53_5570 PF00501 AMP-binding enzyme AS53_5571 PF02632 BioY family AS53_5572 PF00501 AMP-binding enzyme AS53_5572 PF13193 AMP-binding enzyme C-terminal domain AS53_5575 PF05532 CsbD-like AS53_5581 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_5581 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_5583 PF00512 His Kinase A (phospho-acceptor) domain AS53_5583 PF00989 PAS fold AS53_5583 PF13188 PAS domain AS53_5583 PF13426 PAS domain AS53_5583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_5584 PF01738 Dienelactone hydrolase family AS53_5585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_5586 PF00474 Sodium:solute symporter family AS53_5587 PF01645 Conserved region in glutamate synthase AS53_5588 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS53_5589 PF02559 CarD-like/TRCF domain AS53_5590 PF00491 Arginase family AS53_5591 PF01979 Amidohydrolase family AS53_5592 PF17392 Urocanase C-terminal domain AS53_5592 PF17391 Urocanase N-terminal domain AS53_5592 PF01175 Urocanase Rossmann-like domain AS53_5593 PF00221 Aromatic amino acid lyase AS53_5594 PF09021 HutP AS53_5595 PF01209 ubiE/COQ5 methyltransferase family AS53_5599 PF11084 Protein of unknown function (DUF2621) AS53_560 PF01047 MarR family AS53_5606 PF01751 Toprim domain AS53_5606 PF13342 C-terminal repeat of topoisomerase AS53_5606 PF01131 DNA topoisomerase AS53_5608 PF00565 Staphylococcal nuclease homologue AS53_5611 PF02600 Disulfide bond formation protein DsbB AS53_5612 PF01022 Bacterial regulatory protein, arsR family AS53_5613 PF17209 Hfq protein AS53_5615 PF18801 response regulator aspartate phosphatase H, N terminal AS53_562 PF00860 Permease family AS53_5620 PF00589 Phage integrase family AS53_5622 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AS53_5623 PF01609 Transposase DDE domain AS53_5624 PF13276 HTH-like domain AS53_5624 PF00665 Integrase core domain AS53_5624 PF13333 Integrase core domain AS53_5626 PF13333 Integrase core domain AS53_5626 PF00665 Integrase core domain AS53_5626 PF13276 HTH-like domain AS53_5629 PF13333 Integrase core domain AS53_5629 PF00665 Integrase core domain AS53_5629 PF13276 HTH-like domain AS53_563 PF01544 CorA-like Mg2+ transporter protein AS53_5630 PF13276 HTH-like domain AS53_5630 PF00665 Integrase core domain AS53_5630 PF13333 Integrase core domain AS53_5632 PF04740 LXG domain of WXG superfamily AS53_5632 PF14436 Bacterial EndoU nuclease AS53_5639 PF02899 Phage integrase, N-terminal SAM-like domain AS53_5639 PF00589 Phage integrase family AS53_564 PF02885 Glycosyl transferase family, helical bundle domain AS53_564 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AS53_564 PF00591 Glycosyl transferase family, a/b domain AS53_5641 PF18277 AbrB C-terminal domain AS53_5641 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS53_5646 PF09156 Anthrax toxin lethal factor, middle domain AS53_5646 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AS53_565 PF01048 Phosphorylase superfamily AS53_5650 PF01022 Bacterial regulatory protein, arsR family AS53_5651 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 AS53_5651 PF07691 PA14 domain AS53_5651 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain AS53_5651 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 AS53_5653 PF05504 Spore germination B3/ GerAC like, C-terminal AS53_5654 PF03323 Bacillus/Clostridium GerA spore germination protein AS53_5655 PF03845 Spore germination protein AS53_5656 PF00239 Resolvase, N terminal domain AS53_5656 PF02796 Helix-turn-helix domain of resolvase AS53_5657 PF13700 Domain of unknown function (DUF4158) AS53_5657 PF01526 Tn3 transposase DDE domain AS53_566 PF01676 Metalloenzyme superfamily AS53_5661 PF09385 Histidine kinase N terminal AS53_5662 PF08279 HTH domain AS53_5662 PF05043 Mga helix-turn-helix domain AS53_5662 PF00874 PRD domain AS53_5667 PF00156 Phosphoribosyl transferase domain AS53_5668 PF00156 Phosphoribosyl transferase domain AS53_5669 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AS53_5669 PF03497 Anthrax toxin LF subunit AS53_5677 PF13276 HTH-like domain AS53_5677 PF00665 Integrase core domain AS53_5677 PF13333 Integrase core domain AS53_568 PF02899 Phage integrase, N-terminal SAM-like domain AS53_568 PF00589 Phage integrase family AS53_5683 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS53_5683 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS53_5683 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS53_5684 PF00483 Nucleotidyl transferase AS53_5685 PF00535 Glycosyl transferase family 2 AS53_5688 PF01569 PAP2 superfamily AS53_5689 PF00395 S-layer homology domain AS53_569 PF14004 Protein of unknown function (DUF4227) AS53_5695 PF04235 Protein of unknown function (DUF418) AS53_5698 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) AS53_570 PF01475 Ferric uptake regulator family AS53_571 PF01944 Stage II sporulation protein M AS53_5726 PF00437 Type II/IV secretion system protein AS53_573 PF00293 NUDIX domain AS53_574 PF13072 Mother cell inhibitor of FtsZ AS53_5745 PF01580 FtsK/SpoIIIE family AS53_5745 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AS53_5745 PF09397 Ftsk gamma domain AS53_5745 PF17854 FtsK alpha domain AS53_575 PF00248 Aldo/keto reductase family AS53_5750 PF01609 Transposase DDE domain AS53_5751 PF01609 Transposase DDE domain AS53_5752 PF01609 Transposase DDE domain AS53_5758 PF01609 Transposase DDE domain AS53_5759 PF01609 Transposase DDE domain AS53_576 PF00248 Aldo/keto reductase family AS53_577 PF04229 GrpB protein AS53_577 PF13673 Acetyltransferase (GNAT) domain AS53_5773 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AS53_579 PF00565 Staphylococcal nuclease homologue AS53_579 PF02872 5'-nucleotidase, C-terminal domain AS53_579 PF00746 LPXTG cell wall anchor motif AS53_579 PF00149 Calcineurin-like phosphoesterase AS53_5794 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AS53_5802 PF08378 Nuclease-related domain AS53_5808 PF13154 Protein of unknown function (DUF3991) AS53_581 PF12146 Serine aminopeptidase, S33 AS53_5811 PF18840 Large polyvalent protein associated domain 25 AS53_5812 PF17630 Family of unknown function (DUF5511) AS53_5813 PF17633 Family of unknown function (DUF5514) AS53_5818 PF17632 Family of unknown function (DUF5513) AS53_582 PF03553 Na+/H+ antiporter family AS53_582 PF13726 Na+-H+ antiporter family AS53_5820 PF00877 NlpC/P60 family AS53_5827 PF12696 TraM recognition site of TraD and TraG AS53_5830 PF04956 TrbC/VIRB2 family AS53_5836 PF00437 Type II/IV secretion system protein AS53_5845 PF17631 Family of unknown function (DUF5512) AS53_5848 PF17362 Family of unknown function AS53_585 PF00583 Acetyltransferase (GNAT) family AS53_5853 PF08708 Primase C terminal 1 (PriCT-1) AS53_5854 PF13614 AAA domain AS53_5857 PF00395 S-layer homology domain AS53_5857 PF01520 N-acetylmuramoyl-L-alanine amidase AS53_5859 PF13276 HTH-like domain AS53_5859 PF13333 Integrase core domain AS53_5859 PF00665 Integrase core domain AS53_586 PF12146 Serine aminopeptidase, S33 AS53_5863 PF01906 Putative heavy-metal-binding AS53_5865 PF02517 CPBP intramembrane metalloprotease AS53_5866 PF04463 Protein of unknown function (DUF523) AS53_5867 PF00440 Bacterial regulatory proteins, tetR family AS53_5868 PF01609 Transposase DDE domain AS53_5869 PF01609 Transposase DDE domain AS53_587 PF10827 Protein of unknown function (DUF2552) AS53_5870 PF01569 PAP2 superfamily AS53_5871 PF01569 PAP2 superfamily AS53_5873 PF08280 M protein trans-acting positive regulator (MGA) HTH domain AS53_5873 PF05043 Mga helix-turn-helix domain AS53_5877 PF09587 Bacterial capsule synthesis protein PGA_cap AS53_5878 PF14102 Capsule biosynthesis CapC AS53_5879 PF08245 Mur ligase middle domain AS53_5881 PF01022 Bacterial regulatory protein, arsR family AS53_5882 PF01609 Transposase DDE domain AS53_5884 PF10502 Signal peptidase, peptidase S26 AS53_5887 PF09385 Histidine kinase N terminal AS53_5888 PF08279 HTH domain AS53_5888 PF00874 PRD domain AS53_5888 PF05043 Mga helix-turn-helix domain AS53_5889 PF08279 HTH domain AS53_5889 PF05043 Mga helix-turn-helix domain AS53_5889 PF00874 PRD domain AS53_589 PF01872 RibD C-terminal domain AS53_589 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS53_5891 PF01810 LysE type translocator AS53_5893 PF05043 Mga helix-turn-helix domain AS53_5893 PF08280 M protein trans-acting positive regulator (MGA) HTH domain AS53_5893 PF00874 PRD domain AS53_5897 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_590 PF00677 Lumazine binding domain AS53_5900 PF13411 MerR HTH family regulatory protein AS53_5900 PF13152 Protein of unknown function (DUF3967) AS53_5901 PF11798 IMS family HHH motif AS53_5901 PF11799 impB/mucB/samB family C-terminal domain AS53_5901 PF00817 impB/mucB/samB family AS53_5905 PF17443 Uncharacterized protein pXO2-72 AS53_591 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AS53_591 PF00925 GTP cyclohydrolase II AS53_5911 PF01131 DNA topoisomerase AS53_5911 PF01751 Toprim domain AS53_5912 PF01751 Toprim domain AS53_5912 PF01131 DNA topoisomerase AS53_593 PF00885 6,7-dimethyl-8-ribityllumazine synthase AS53_594 PF06968 Biotin and Thiamin Synthesis associated domain AS53_594 PF04055 Radical SAM superfamily AS53_595 PF13847 Methyltransferase domain AS53_596 PF08241 Methyltransferase domain AS53_596 PF12697 Alpha/beta hydrolase family AS53_597 PF00155 Aminotransferase class I and II AS53_599 PF00202 Aminotransferase class-III AS53_6 PF03788 LrgA family AS53_602 PF00149 Calcineurin-like phosphoesterase AS53_602 PF02872 5'-nucleotidase, C-terminal domain AS53_604 PF13404 AsnC-type helix-turn-helix domain AS53_604 PF01037 Lrp/AsnC ligand binding domain AS53_607 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AS53_607 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AS53_608 PF00202 Aminotransferase class-III AS53_609 PF00696 Amino acid kinase family AS53_610 PF01960 ArgJ family AS53_611 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS53_611 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS53_613 PF00106 short chain dehydrogenase AS53_614 PF00753 Metallo-beta-lactamase superfamily AS53_616 PF03807 NADP oxidoreductase coenzyme F420-dependent AS53_616 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS53_617 PF03313 Serine dehydratase alpha chain AS53_618 PF01842 ACT domain AS53_618 PF03315 Serine dehydratase beta chain AS53_619 PF00753 Metallo-beta-lactamase superfamily AS53_619 PF12706 Beta-lactamase superfamily domain AS53_621 PF11798 IMS family HHH motif AS53_621 PF00817 impB/mucB/samB family AS53_621 PF11799 impB/mucB/samB family C-terminal domain AS53_623 PF01546 Peptidase family M20/M25/M40 AS53_623 PF07687 Peptidase dimerisation domain AS53_624 PF13302 Acetyltransferase (GNAT) domain AS53_626 PF03734 L,D-transpeptidase catalytic domain AS53_627 PF06081 Aromatic acid exporter family member 1 AS53_627 PF11728 Putative aromatic acid exporter C-terminal domain AS53_628 PF00005 ABC transporter AS53_629 PF00528 Binding-protein-dependent transport system inner membrane component AS53_630 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS53_631 PF06491 Disulphide isomerase AS53_632 PF11208 Protein of unknown function (DUF2992) AS53_633 PF09297 NADH pyrophosphatase zinc ribbon domain AS53_633 PF00293 NUDIX domain AS53_634 PF01098 Cell cycle protein AS53_635 PF02817 e3 binding domain AS53_635 PF00364 Biotin-requiring enzyme AS53_635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS53_636 PF02780 Transketolase, C-terminal domain AS53_636 PF02779 Transketolase, pyrimidine binding domain AS53_637 PF00676 Dehydrogenase E1 component AS53_638 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS53_638 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS53_639 PF00871 Acetokinase family AS53_640 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS53_640 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AS53_641 PF01515 Phosphate acetyl/butaryl transferase AS53_642 PF00158 Sigma-54 interaction domain AS53_642 PF00989 PAS fold AS53_642 PF02954 Bacterial regulatory protein, Fis family AS53_644 PF03009 Glycerophosphoryl diester phosphodiesterase family AS53_645 PF14174 YycC-like protein AS53_647 PF00072 Response regulator receiver domain AS53_647 PF08769 Sporulation initiation factor Spo0A C terminal AS53_648 PF17820 PDZ domain AS53_648 PF05580 SpoIVB peptidase S55 AS53_649 PF13476 AAA domain AS53_650 PF01316 Arginine repressor, DNA binding domain AS53_650 PF02863 Arginine repressor, C-terminal domain AS53_651 PF01728 FtsJ-like methyltransferase AS53_651 PF01479 S4 domain AS53_652 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AS53_652 PF02780 Transketolase, C-terminal domain AS53_652 PF02779 Transketolase, pyrimidine binding domain AS53_653 PF00348 Polyprenyl synthetase AS53_654 PF02609 Exonuclease VII small subunit AS53_655 PF13742 OB-fold nucleic acid binding domain AS53_655 PF02601 Exonuclease VII, large subunit AS53_656 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AS53_656 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AS53_657 PF01029 NusB family AS53_658 PF03780 Asp23 family, cell envelope-related function AS53_659 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS53_659 PF00289 Biotin carboxylase, N-terminal domain AS53_659 PF02785 Biotin carboxylase C-terminal domain AS53_660 PF00364 Biotin-requiring enzyme AS53_662 PF12685 SpoIIIAH-like protein AS53_664 PF09581 Stage III sporulation protein AF (Spore_III_AF) AS53_665 PF09546 Stage III sporulation protein AE (spore_III_AE) AS53_666 PF06686 Stage III sporulation protein AC/AD protein family AS53_667 PF06686 Stage III sporulation protein AC/AD protein family AS53_668 PF09548 Stage III sporulation protein AB (spore_III_AB) AS53_673 PF09285 Elongation factor P, C-terminal AS53_673 PF01132 Elongation factor P (EF-P) OB domain AS53_673 PF08207 Elongation factor P (EF-P) KOW-like domain AS53_674 PF00557 Metallopeptidase family M24 AS53_674 PF01321 Creatinase/Prolidase N-terminal domain AS53_675 PF01220 Dehydroquinase class II AS53_676 PF11085 Conserved membrane protein YqhR AS53_677 PF07136 Protein of unknown function (DUF1385) AS53_678 PF13419 Haloacid dehalogenase-like hydrolase AS53_680 PF01325 Iron dependent repressor, N-terminal DNA binding domain AS53_680 PF02742 Iron dependent repressor, metal binding and dimerisation domain AS53_683 PF03099 Biotin/lipoate A/B protein ligase family AS53_684 PF00581 Rhodanese-like domain AS53_685 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS53_685 PF00356 Bacterial regulatory proteins, lacI family AS53_687 PF00893 Small Multidrug Resistance protein AS53_688 PF00893 Small Multidrug Resistance protein AS53_695 PF00005 ABC transporter AS53_696 PF00392 Bacterial regulatory proteins, gntR family AS53_699 PF02347 Glycine cleavage system P-protein AS53_7 PF04172 LrgB-like family AS53_700 PF02347 Glycine cleavage system P-protein AS53_701 PF08669 Glycine cleavage T-protein C-terminal barrel domain AS53_701 PF01571 Aminomethyltransferase folate-binding domain AS53_702 PF00176 SNF2 family N-terminal domain AS53_702 PF00271 Helicase conserved C-terminal domain AS53_703 PF11079 Bacterial protein YqhG of unknown function AS53_707 PF14038 YqzE-like protein AS53_708 PF01202 Shikimate kinase AS53_713 PF07963 Prokaryotic N-terminal methylation motif AS53_715 PF00482 Type II secretion system (T2SS), protein F AS53_716 PF00437 Type II/IV secretion system protein AS53_718 PF11117 Protein of unknown function (DUF2626) AS53_719 PF00375 Sodium:dicarboxylate symporter family AS53_726 PF03033 Glycosyltransferase family 28 N-terminal domain AS53_726 PF04101 Glycosyltransferase family 28 C-terminal domain AS53_727 PF02607 B12 binding domain AS53_727 PF02574 Homocysteine S-methyltransferase AS53_727 PF00809 Pterin binding enzyme AS53_727 PF02965 Vitamin B12 dependent methionine synthase, activation domain AS53_727 PF02310 B12 binding domain AS53_728 PF02219 Methylenetetrahydrofolate reductase AS53_728 PF02574 Homocysteine S-methyltransferase AS53_729 PF01053 Cys/Met metabolism PLP-dependent enzyme AS53_730 PF01053 Cys/Met metabolism PLP-dependent enzyme AS53_732 PF01022 Bacterial regulatory protein, arsR family AS53_734 PF00753 Metallo-beta-lactamase superfamily AS53_735 PF10958 Protein of unknown function (DUF2759) AS53_736 PF00480 ROK family AS53_737 PF06014 Bacterial protein of unknown function (DUF910) AS53_738 PF01812 5-formyltetrahydrofolate cyclo-ligase family AS53_739 PF00471 Ribosomal protein L33 AS53_740 PF00483 Nucleotidyl transferase AS53_741 PF01895 PhoU domain AS53_742 PF00005 ABC transporter AS53_743 PF00528 Binding-protein-dependent transport system inner membrane component AS53_744 PF00528 Binding-protein-dependent transport system inner membrane component AS53_745 PF12849 PBP superfamily domain AS53_747 PF07690 Major Facilitator Superfamily AS53_748 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS53_748 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS53_752 PF04551 GcpE protein AS53_753 PF01475 Ferric uptake regulator family AS53_754 PF00950 ABC 3 transport family AS53_755 PF00005 ABC transporter AS53_756 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS53_756 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS53_757 PF11116 Protein of unknown function (DUF2624) AS53_758 PF01261 Xylose isomerase-like TIM barrel AS53_759 PF00271 Helicase conserved C-terminal domain AS53_759 PF00270 DEAD/DEAH box helicase AS53_761 PF02401 LytB protein AS53_762 PF01784 NIF3 (NGG1p interacting factor 3) AS53_763 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AS53_764 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS53_765 PF00140 Sigma-70 factor, region 1.2 AS53_765 PF04542 Sigma-70 region 2 AS53_765 PF04545 Sigma-70, region 4 AS53_765 PF03979 Sigma-70 factor, region 1.1 AS53_765 PF04539 Sigma-70 region 3 AS53_766 PF08275 DNA primase catalytic core, N-terminal domain AS53_766 PF01807 CHC2 zinc finger AS53_766 PF10410 DnaB-helicase binding domain of primase AS53_767 PF03618 Kinase/pyrophosphorylase AS53_768 PF08279 HTH domain AS53_768 PF00571 CBS domain AS53_769 PF02565 Recombination protein O C terminal AS53_769 PF11967 Recombination protein O N terminal AS53_771 PF07650 KH domain AS53_771 PF01926 50S ribosome-binding GTPase AS53_772 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS53_773 PF01219 Prokaryotic diacylglycerol kinase AS53_774 PF02130 Uncharacterized protein family UPF0054 AS53_775 PF07697 7TM-HD extracellular AS53_775 PF07698 7TM receptor with intracellular HD hydrolase AS53_775 PF01966 HD domain AS53_776 PF02562 PhoH-like protein AS53_777 PF06898 Putative stage IV sporulation protein YqfD AS53_778 PF07873 YabP family AS53_779 PF09424 Yqey-like protein AS53_780 PF01165 Ribosomal protein S21 AS53_781 PF00919 Uncharacterized protein family UPF0004 AS53_781 PF04055 Radical SAM superfamily AS53_781 PF01938 TRAM domain AS53_782 PF04452 RNA methyltransferase AS53_784 PF00226 DnaJ domain AS53_784 PF01556 DnaJ C terminal domain AS53_784 PF00684 DnaJ central domain AS53_785 PF00012 Hsp70 protein AS53_786 PF01025 GrpE AS53_787 PF01628 HrcA protein C terminal domain AS53_788 PF04055 Radical SAM superfamily AS53_788 PF06969 HemN C-terminal domain AS53_789 PF01638 HxlR-like helix-turn-helix AS53_790 PF00009 Elongation factor Tu GTP binding domain AS53_790 PF00679 Elongation factor G C-terminus AS53_790 PF06421 GTP-binding protein LepA C-terminus AS53_790 PF03144 Elongation factor Tu domain 2 AS53_792 PF03418 Germination protease AS53_793 PF01649 Ribosomal protein S20 AS53_794 PF06144 DNA polymerase III, delta subunit AS53_795 PF14141 YqzM-like protein AS53_796 PF00753 Metallo-beta-lactamase superfamily AS53_796 PF13567 Domain of unknown function (DUF4131) AS53_796 PF03772 Competence protein AS53_797 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS53_798 PF10531 SLBB domain AS53_799 PF03807 NADP oxidoreductase coenzyme F420-dependent AS53_799 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS53_8 PF00293 NUDIX domain AS53_8 PF13344 Haloacid dehalogenase-like hydrolase AS53_800 PF13649 Methyltransferase domain AS53_802 PF01966 HD domain AS53_803 PF01467 Cytidylyltransferase-like AS53_804 PF01985 CRS1 / YhbY (CRM) domain AS53_805 PF08501 Shikimate dehydrogenase substrate binding domain AS53_805 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AS53_805 PF01488 Shikimate / quinate 5-dehydrogenase AS53_806 PF01926 50S ribosome-binding GTPase AS53_808 PF02666 Phosphatidylserine decarboxylase AS53_809 PF04545 Sigma-70, region 4 AS53_809 PF04542 Sigma-70 region 2 AS53_812 PF16244 Domain of unknown function (DUF4901) AS53_813 PF00471 Ribosomal protein L33 AS53_814 PF00881 Nitroreductase family AS53_815 PF04607 Region found in RelA / SpoT proteins AS53_817 PF00245 Alkaline phosphatase AS53_819 PF00561 alpha/beta hydrolase fold AS53_819 PF08386 TAP-like protein AS53_82 PF02511 Thymidylate synthase complementing protein AS53_826 PF13860 FlgD Ig-like domain AS53_826 PF05922 Peptidase inhibitor I9 AS53_826 PF00082 Subtilase family AS53_826 PF02225 PA domain AS53_827 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AS53_829 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_83 PF00145 C-5 cytosine-specific DNA methylase AS53_830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS53_831 PF07681 DoxX AS53_837 PF00005 ABC transporter AS53_838 PF01032 FecCD transport family AS53_839 PF01497 Periplasmic binding protein AS53_840 PF14143 YrhC-like protein AS53_841 PF00171 Aldehyde dehydrogenase family AS53_841 PF00465 Iron-containing alcohol dehydrogenase AS53_842 PF01053 Cys/Met metabolism PLP-dependent enzyme AS53_843 PF00291 Pyridoxal-phosphate dependent enzyme AS53_844 PF01048 Phosphorylase superfamily AS53_845 PF08241 Methyltransferase domain AS53_848 PF00905 Penicillin binding protein transpeptidase domain AS53_848 PF03717 Penicillin-binding Protein dimerisation domain AS53_849 PF03449 Transcription elongation factor, N-terminal AS53_849 PF01272 Transcription elongation factor, GreA/GreB, C-term AS53_850 PF00485 Phosphoribulokinase / Uridine kinase family AS53_854 PF02618 YceG-like family AS53_855 PF06949 Protein of unknown function (DUF1292) AS53_856 PF03652 Holliday junction resolvase AS53_857 PF06135 IreB regulatory phosphoprotein AS53_858 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS53_858 PF01411 tRNA synthetases class II (A) AS53_858 PF02272 DHHA1 domain AS53_860 PF01594 AI-2E family transporter AS53_864 PF14490 Helix-hairpin-helix containing domain AS53_864 PF13538 UvrD-like helicase C-terminal domain AS53_864 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AS53_867 PF00266 Aminotransferase class-V AS53_868 PF02082 Transcriptional regulator AS53_869 PF05496 Holliday junction DNA helicase RuvB P-loop domain AS53_869 PF12002 MgsA AAA+ ATPase C terminal AS53_869 PF16193 AAA C-terminal domain AS53_871 PF00899 ThiF family AS53_872 PF02938 GAD domain AS53_872 PF00152 tRNA synthetases class II (D, K and N) AS53_872 PF01336 OB-fold nucleic acid binding domain AS53_873 PF13393 Histidyl-tRNA synthetase AS53_873 PF03129 Anticodon binding domain AS53_875 PF02580 D-Tyr-tRNA(Tyr) deacylase AS53_876 PF13291 ACT domain AS53_876 PF04607 Region found in RelA / SpoT proteins AS53_876 PF02824 TGS domain AS53_877 PF00156 Phosphoribosyl transferase domain AS53_878 PF01368 DHH family AS53_878 PF02272 DHHA1 domain AS53_878 PF17768 RecJ OB domain AS53_878 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AS53_879 PF16916 Dimerisation domain of Zinc Transporter AS53_879 PF01545 Cation efflux family AS53_880 PF02355 Protein export membrane protein AS53_880 PF07549 SecD/SecF GG Motif AS53_881 PF13797 Post-transcriptional regulator AS53_882 PF01943 Polysaccharide biosynthesis protein AS53_882 PF14667 Polysaccharide biosynthesis C-terminal domain AS53_883 PF04239 Protein of unknown function (DUF421) AS53_885 PF02699 Preprotein translocase subunit AS53_886 PF01702 Queuine tRNA-ribosyltransferase AS53_887 PF02547 Queuosine biosynthesis protein AS53_888 PF11146 Protein of unknown function (DUF2905) AS53_889 PF05496 Holliday junction DNA helicase RuvB P-loop domain AS53_889 PF17864 RuvB AAA lid domain AS53_889 PF05491 RuvB C-terminal winged helix domain AS53_890 PF01330 RuvA N terminal domain AS53_890 PF07499 RuvA, C-terminal domain AS53_891 PF01497 Periplasmic binding protein AS53_893 PF00892 EamA-like transporter family AS53_894 PF00892 EamA-like transporter family AS53_895 PF01022 Bacterial regulatory protein, arsR family AS53_898 PF01476 LysM domain AS53_899 PF02445 Quinolinate synthetase A protein AS53_900 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AS53_900 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AS53_901 PF00890 FAD binding domain AS53_901 PF02910 Fumarate reductase flavoprotein C-term AS53_902 PF00266 Aminotransferase class-V AS53_903 PF02829 3H domain AS53_903 PF08279 HTH domain AS53_904 PF03473 MOSC domain AS53_904 PF03475 3-alpha domain AS53_905 PF01842 ACT domain AS53_905 PF00800 Prephenate dehydratase AS53_906 PF02687 FtsX-like permease family AS53_907 PF02687 FtsX-like permease family AS53_908 PF00005 ABC transporter AS53_909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_911 PF00486 Transcriptional regulatory protein, C terminal AS53_911 PF00072 Response regulator receiver domain AS53_912 PF01018 GTP1/OBG AS53_912 PF09269 Domain of unknown function (DUF1967) AS53_912 PF01926 50S ribosome-binding GTPase AS53_913 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS53_913 PF14682 Sporulation initiation phospho-transferase B, C-terminal AS53_914 PF01016 Ribosomal L27 protein AS53_915 PF04327 Cysteine protease Prp AS53_916 PF00829 Ribosomal prokaryotic L21 protein AS53_917 PF00575 S1 RNA binding domain AS53_917 PF10150 Ribonuclease E/G family AS53_918 PF02163 Peptidase family M50 AS53_919 PF01551 Peptidase family M23 AS53_920 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AS53_921 PF03775 Septum formation inhibitor MinC, C-terminal domain AS53_923 PF04085 rod shape-determining protein MreC AS53_925 PF04002 RadC-like JAB domain AS53_926 PF02545 Maf-like protein AS53_928 PF02875 Mur ligase family, glutamate ligase domain AS53_928 PF08245 Mur ligase middle domain AS53_929 PF10458 Valyl tRNA synthetase tRNA binding arm AS53_929 PF00133 tRNA synthetases class I (I, L, M and V) AS53_929 PF08264 Anticodon-binding domain of tRNA AS53_931 PF01476 LysM domain AS53_932 PF00202 Aminotransferase class-III AS53_933 PF00490 Delta-aminolevulinic acid dehydratase AS53_934 PF02602 Uroporphyrinogen-III synthase HemD AS53_935 PF03900 Porphobilinogen deaminase, C-terminal domain AS53_935 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AS53_936 PF01578 Cytochrome C assembly protein AS53_937 PF01488 Shikimate / quinate 5-dehydrogenase AS53_937 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AS53_937 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AS53_938 PF01047 MarR family AS53_939 PF02566 OsmC-like protein AS53_940 PF01926 50S ribosome-binding GTPase AS53_941 PF00004 ATPase family associated with various cellular activities (AAA) AS53_941 PF05362 Lon protease (S16) C-terminal proteolytic domain AS53_941 PF02190 ATP-dependent protease La (LON) substrate-binding domain AS53_942 PF05362 Lon protease (S16) C-terminal proteolytic domain AS53_942 PF00004 ATPase family associated with various cellular activities (AAA) AS53_943 PF07724 AAA domain (Cdc48 subfamily) AS53_943 PF10431 C-terminal, D2-small domain, of ClpB protein AS53_943 PF06689 ClpX C4-type zinc finger AS53_944 PF05697 Bacterial trigger factor protein (TF) AS53_944 PF05698 Bacterial trigger factor protein (TF) C-terminus AS53_944 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AS53_948 PF11724 YvbH-like oligomerisation region AS53_948 PF08000 Bacterial PH domain AS53_952 PF12850 Calcineurin-like phosphoesterase superfamily domain AS53_953 PF01725 Ham1 family AS53_954 PF03725 3' exoribonuclease family, domain 2 AS53_954 PF01138 3' exoribonuclease family, domain 1 AS53_955 PF10646 Sporulation and spore germination AS53_956 PF01177 Asp/Glu/Hydantoin racemase AS53_957 PF07690 Major Facilitator Superfamily AS53_959 PF00440 Bacterial regulatory proteins, tetR family AS53_962 PF00196 Bacterial regulatory proteins, luxR family AS53_963 PF00860 Permease family AS53_965 PF07969 Amidohydrolase family AS53_966 PF07969 Amidohydrolase family AS53_967 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS53_969 PF00528 Binding-protein-dependent transport system inner membrane component AS53_970 PF00005 ABC transporter AS53_970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_971 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS53_971 PF00005 ABC transporter AS53_972 PF07694 5TMR of 5TMR-LYT AS53_972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS53_972 PF06580 Histidine kinase AS53_973 PF04397 LytTr DNA-binding domain AS53_973 PF00072 Response regulator receiver domain AS53_976 PF04024 PspC domain AS53_977 PF07883 Cupin domain AS53_977 PF01381 Helix-turn-helix AS53_978 PF13536 Putative multidrug resistance efflux transporter AS53_979 PF00230 Major intrinsic protein AS53_98 PF01381 Helix-turn-helix AS53_980 PF02082 Transcriptional regulator AS53_982 PF13732 Domain of unknown function (DUF4162) AS53_982 PF00005 ABC transporter AS53_983 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AS53_984 PF13677 Membrane MotB of proton-channel complex MotA/MotB AS53_984 PF00691 OmpA family AS53_985 PF13677 Membrane MotB of proton-channel complex MotA/MotB AS53_985 PF00691 OmpA family AS53_986 PF01618 MotA/TolQ/ExbB proton channel family AS53_987 PF02557 D-alanyl-D-alanine carboxypeptidase AS53_988 PF03061 Thioesterase superfamily AS53_989 PF13183 4Fe-4S dicluster domain AS53_989 PF13085 2Fe-2S iron-sulfur cluster binding domain AS53_990 PF00890 FAD binding domain AS53_990 PF02910 Fumarate reductase flavoprotein C-term AS53_991 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AS53_992 PF10702 Protein of unknown function (DUF2507) AS53_993 PF02151 UvrB/uvrC motif AS53_993 PF01541 GIY-YIG catalytic domain AS53_993 PF08459 UvrC Helix-hairpin-helix N-terminal AS53_994 PF00085 Thioredoxin AS53_995 PF01012 Electron transfer flavoprotein domain AS53_995 PF00766 Electron transfer flavoprotein FAD-binding domain AS53_996 PF01012 Electron transfer flavoprotein domain AS53_997 PF00378 Enoyl-CoA hydratase/isomerase AS53_998 PF00440 Bacterial regulatory proteins, tetR family AS53_998 PF08359 YsiA-like protein, C-terminal region AS53_999 PF00501 AMP-binding enzyme AS53_999 PF13193 AMP-binding enzyme C-terminal domain