locus-tag class description AK39_1 PF00162 Phosphoglycerate kinase AK39_10 PF04860 Phage portal protein AK39_1002 PF00202 Aminotransferase class-III AK39_1004 PF00155 Aminotransferase class I and II AK39_1005 PF08241 Methyltransferase domain AK39_1005 PF12697 Alpha/beta hydrolase family AK39_1006 PF13847 Methyltransferase domain AK39_1007 PF04055 Radical SAM superfamily AK39_1007 PF06968 Biotin and Thiamin Synthesis associated domain AK39_1008 PF00885 6,7-dimethyl-8-ribityllumazine synthase AK39_101 PF13520 Amino acid permease AK39_1010 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AK39_1010 PF00925 GTP cyclohydrolase II AK39_1011 PF00677 Lumazine binding domain AK39_1012 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK39_1012 PF01872 RibD C-terminal domain AK39_1014 PF10827 Protein of unknown function (DUF2552) AK39_1015 PF12146 Serine aminopeptidase, S33 AK39_1016 PF00583 Acetyltransferase (GNAT) family AK39_1017 PF00356 Bacterial regulatory proteins, lacI family AK39_1018 PF13726 Na+-H+ antiporter family AK39_1018 PF03553 Na+/H+ antiporter family AK39_1019 PF12146 Serine aminopeptidase, S33 AK39_102 PF07690 Major Facilitator Superfamily AK39_1021 PF00149 Calcineurin-like phosphoesterase AK39_1021 PF00565 Staphylococcal nuclease homologue AK39_1021 PF00746 LPXTG cell wall anchor motif AK39_1021 PF02872 5'-nucleotidase, C-terminal domain AK39_1023 PF04229 GrpB protein AK39_1023 PF13673 Acetyltransferase (GNAT) domain AK39_1024 PF00248 Aldo/keto reductase family AK39_1025 PF00248 Aldo/keto reductase family AK39_1026 PF13072 Mother cell inhibitor of FtsZ AK39_1027 PF00293 NUDIX domain AK39_1029 PF01944 Stage II sporulation protein M AK39_1030 PF01475 Ferric uptake regulator family AK39_1031 PF14004 Protein of unknown function (DUF4227) AK39_1032 PF02899 Phage integrase, N-terminal SAM-like domain AK39_1032 PF00589 Phage integrase family AK39_1034 PF01676 Metalloenzyme superfamily AK39_1035 PF01048 Phosphorylase superfamily AK39_1036 PF02885 Glycosyl transferase family, helical bundle domain AK39_1036 PF00591 Glycosyl transferase family, a/b domain AK39_1036 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AK39_1037 PF01544 CorA-like Mg2+ transporter protein AK39_1038 PF00860 Permease family AK39_1040 PF01047 MarR family AK39_1043 PF00005 ABC transporter AK39_1044 PF00392 Bacterial regulatory proteins, gntR family AK39_1045 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_1045 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_1046 PF01740 STAS domain AK39_1047 PF13581 Histidine kinase-like ATPase domain AK39_1048 PF04545 Sigma-70, region 4 AK39_1048 PF04539 Sigma-70 region 3 AK39_1048 PF04542 Sigma-70 region 2 AK39_1049 PF00209 Sodium:neurotransmitter symporter family AK39_1051 PF12164 Stage V sporulation protein AA AK39_1052 PF13782 Stage V sporulation protein AB AK39_1053 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK39_1054 PF07451 Stage V sporulation protein AD (SpoVAD) AK39_1055 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK39_1056 PF14097 Stage V sporulation protein AE1 AK39_1057 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_1059 PF06207 Protein of unknown function (DUF1002) AK39_106 PF00672 HAMP domain AK39_106 PF02743 Cache domain AK39_106 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_1060 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AK39_1061 PF00583 Acetyltransferase (GNAT) family AK39_1062 PF03745 Domain of unknown function (DUF309) AK39_1064 PF02616 Segregation and condensation protein ScpA AK39_1065 PF04079 Segregation and condensation complex subunit ScpB AK39_1067 PF01979 Amidohydrolase family AK39_1068 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AK39_107 PF01910 Thiamine-binding protein AK39_1071 PF00874 PRD domain AK39_1071 PF03123 CAT RNA binding domain AK39_1072 PF02378 Phosphotransferase system, EIIC AK39_1072 PF00367 phosphotransferase system, EIIB AK39_1072 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK39_1073 PF00381 PTS HPr component phosphorylation site AK39_1074 PF02896 PEP-utilising enzyme, TIM barrel domain AK39_1074 PF05524 PEP-utilising enzyme, N-terminal AK39_1074 PF00391 PEP-utilising enzyme, mobile domain AK39_1077 PF00881 Nitroreductase family AK39_1078 PF00990 Diguanylate cyclase, GGDEF domain AK39_1079 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK39_1079 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK39_108 PF10835 Protein of unknown function (DUF2573) AK39_1080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK39_1080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK39_1083 PF03079 ARD/ARD' family AK39_1084 PF00596 Class II Aldolase and Adducin N-terminal domain AK39_1086 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AK39_1086 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AK39_1087 PF00155 Aminotransferase class I and II AK39_1088 PF00795 Carbon-nitrogen hydrolase AK39_1089 PF01636 Phosphotransferase enzyme family AK39_109 PF01619 Proline dehydrogenase AK39_1093 PF03551 Transcriptional regulator PadR-like family AK39_1099 PF00293 NUDIX domain AK39_110 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_110 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_1100 PF00108 Thiolase, N-terminal domain AK39_1100 PF02803 Thiolase, C-terminal domain AK39_1108 PF03459 TOBE domain AK39_1108 PF17912 MalK OB fold domain AK39_1108 PF00005 ABC transporter AK39_1109 PF16657 Maltogenic Amylase, C-terminal domain AK39_1109 PF00128 Alpha amylase, catalytic domain AK39_111 PF14115 YuzL-like protein AK39_1110 PF16657 Maltogenic Amylase, C-terminal domain AK39_1110 PF02903 Alpha amylase, N-terminal ig-like domain AK39_1110 PF00128 Alpha amylase, catalytic domain AK39_1111 PF13416 Bacterial extracellular solute-binding protein AK39_1112 PF00528 Binding-protein-dependent transport system inner membrane component AK39_1113 PF00528 Binding-protein-dependent transport system inner membrane component AK39_1114 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK39_1114 PF00356 Bacterial regulatory proteins, lacI family AK39_1115 PF00155 Aminotransferase class I and II AK39_1117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_1117 PF00512 His Kinase A (phospho-acceptor) domain AK39_1119 PF14040 Deoxyribonuclease NucA/NucB AK39_112 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AK39_112 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AK39_112 PF00378 Enoyl-CoA hydratase/isomerase AK39_1121 PF08267 Cobalamin-independent synthase, N-terminal domain AK39_1121 PF01717 Cobalamin-independent synthase, Catalytic domain AK39_1123 PF07690 Major Facilitator Superfamily AK39_1128 PF14177 YkyB-like protein AK39_1129 PF02541 Ppx/GppA phosphatase family AK39_113 PF00108 Thiolase, N-terminal domain AK39_113 PF02803 Thiolase, C-terminal domain AK39_1130 PF02503 Polyphosphate kinase middle domain AK39_1130 PF13090 Polyphosphate kinase C-terminal domain 2 AK39_1130 PF17941 Polyphosphate kinase C-terminal domain 1 AK39_1130 PF13089 Polyphosphate kinase N-terminal domain AK39_1132 PF00149 Calcineurin-like phosphoesterase AK39_1132 PF10518 TAT (twin-arginine translocation) pathway signal sequence AK39_1134 PF00563 EAL domain AK39_1134 PF10388 EAL-domain associated signalling protein domain AK39_1137 PF08796 Protein of unknown function (DUF1797) AK39_1139 PF04308 Ribonuclease H-like AK39_114 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK39_114 PF02770 Acyl-CoA dehydrogenase, middle domain AK39_114 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK39_1142 PF03466 LysR substrate binding domain AK39_1142 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_1143 PF14602 Hexapeptide repeat of succinyl-transferase AK39_1143 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AK39_1143 PF00132 Bacterial transferase hexapeptide (six repeats) AK39_1144 PF01546 Peptidase family M20/M25/M40 AK39_1144 PF07687 Peptidase dimerisation domain AK39_1146 PF02080 TrkA-C domain AK39_1146 PF02254 TrkA-N domain AK39_1147 PF17770 Ribonuclease J C-terminal domain AK39_1147 PF00753 Metallo-beta-lactamase superfamily AK39_1147 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AK39_115 PF00753 Metallo-beta-lactamase superfamily AK39_1150 PF01327 Polypeptide deformylase AK39_1152 PF00676 Dehydrogenase E1 component AK39_1153 PF02780 Transketolase, C-terminal domain AK39_1153 PF02779 Transketolase, pyrimidine binding domain AK39_1154 PF02817 e3 binding domain AK39_1154 PF00364 Biotin-requiring enzyme AK39_1154 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK39_1155 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_1155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK39_116 PF00440 Bacterial regulatory proteins, tetR family AK39_116 PF13305 Tetracyclin repressor-like, C-terminal domain AK39_1163 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AK39_1163 PF01276 Orn/Lys/Arg decarboxylase, major domain AK39_1164 PF05256 Uncharacterised protein family (UPF0223) AK39_1165 PF06335 Protein of unknown function (DUF1054) AK39_1167 PF00459 Inositol monophosphatase family AK39_1170 PF14036 YlaH-like protein AK39_1172 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AK39_1174 PF13638 PIN domain AK39_1174 PF02562 PhoH-like protein AK39_1176 PF07408 Protein of unknown function (DUF1507) AK39_1177 PF01098 Cell cycle protein AK39_1178 PF00682 HMGL-like AK39_1178 PF02785 Biotin carboxylase C-terminal domain AK39_1178 PF02436 Conserved carboxylase domain AK39_1178 PF00289 Biotin carboxylase, N-terminal domain AK39_1178 PF00364 Biotin-requiring enzyme AK39_1178 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK39_1179 PF02628 Cytochrome oxidase assembly protein AK39_1180 PF01040 UbiA prenyltransferase family AK39_1181 PF00034 Cytochrome c AK39_1181 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AK39_1181 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AK39_1182 PF00115 Cytochrome C and Quinol oxidase polypeptide I AK39_1183 PF00510 Cytochrome c oxidase subunit III AK39_1184 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AK39_1185 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AK39_1186 PF00795 Carbon-nitrogen hydrolase AK39_1187 PF08868 YugN-like family AK39_1188 PF14504 CAP-associated N-terminal AK39_1188 PF00188 Cysteine-rich secretory protein family AK39_1189 PF14071 Putative coat protein AK39_1190 PF14003 YlbE-like protein AK39_1191 PF00300 Histidine phosphatase superfamily (branch 1) AK39_1192 PF06133 Control of competence regulator ComK, YlbF/YmcA AK39_1193 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AK39_1197 PF07670 Nucleoside recognition AK39_1198 PF01467 Cytidylyltransferase-like AK39_1199 PF01734 Patatin-like phospholipase AK39_1200 PF13180 PDZ domain AK39_1200 PF05362 Lon protease (S16) C-terminal proteolytic domain AK39_1201 PF05636 HIGH Nucleotidyl Transferase AK39_1202 PF00589 Phage integrase family AK39_1202 PF14659 Phage integrase, N-terminal SAM-like domain AK39_1206 PF01381 Helix-turn-helix AK39_121 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK39_121 PF00056 lactate/malate dehydrogenase, NAD binding domain AK39_1210 PF01381 Helix-turn-helix AK39_1216 PF07319 Primosomal protein DnaI N-terminus AK39_1216 PF01695 IstB-like ATP binding protein AK39_1221 PF04542 Sigma-70 region 2 AK39_1221 PF04539 Sigma-70 region 3 AK39_1221 PF04545 Sigma-70, region 4 AK39_1226 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_1236 PF00589 Phage integrase family AK39_1237 PF10137 Predicted nucleotide-binding protein containing TIR-like domain AK39_1241 PF03354 Phage Terminase AK39_1243 PF00574 Clp protease AK39_1260 PF05105 Bacteriophage holin family AK39_1261 PF01510 N-acetylmuramoyl-L-alanine amidase AK39_1261 PF12123 N-acetylmuramoyl-l-alanine amidase AK39_1270 PF02620 Large ribosomal RNA subunit accumulation protein YceD AK39_1271 PF01783 Ribosomal L32p protein family AK39_1273 PF00583 Acetyltransferase (GNAT) family AK39_1274 PF02558 Ketopantoate reductase PanE/ApbA AK39_1274 PF08546 Ketopantoate reductase PanE/ApbA C terminal AK39_1275 PF10079 Bacillithiol biosynthesis BshC AK39_1276 PF01795 MraW methylase family AK39_1277 PF04977 Septum formation initiator AK39_1279 PF03717 Penicillin-binding Protein dimerisation domain AK39_1279 PF00905 Penicillin binding protein transpeptidase domain AK39_1279 PF03793 PASTA domain AK39_1280 PF01225 Mur ligase family, catalytic domain AK39_1280 PF02875 Mur ligase family, glutamate ligase domain AK39_1280 PF08245 Mur ligase middle domain AK39_1281 PF00953 Glycosyl transferase family 4 AK39_1281 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AK39_1282 PF08245 Mur ligase middle domain AK39_1282 PF02875 Mur ligase family, glutamate ligase domain AK39_1283 PF01098 Cell cycle protein AK39_1284 PF04101 Glycosyltransferase family 28 C-terminal domain AK39_1284 PF03033 Glycosyltransferase family 28 N-terminal domain AK39_1285 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AK39_1285 PF01565 FAD binding domain AK39_1286 PF08478 POTRA domain, FtsQ-type AK39_1286 PF03799 Cell division protein FtsQ AK39_1287 PF02491 SHS2 domain inserted in FTSA AK39_1288 PF12327 FtsZ family, C-terminal domain AK39_1288 PF00091 Tubulin/FtsZ family, GTPase domain AK39_1289 PF03419 Sporulation factor SpoIIGA AK39_1290 PF04542 Sigma-70 region 2 AK39_1290 PF04545 Sigma-70, region 4 AK39_1291 PF04545 Sigma-70, region 4 AK39_1291 PF04539 Sigma-70 region 3 AK39_1291 PF04542 Sigma-70 region 2 AK39_1292 PF05239 PRC-barrel domain AK39_1294 PF01168 Alanine racemase, N-terminal domain AK39_1295 PF04472 Cell division protein SepF AK39_1296 PF02325 YGGT family AK39_1297 PF17774 Putative RNA-binding domain in YlmH AK39_1297 PF01479 S4 domain AK39_1298 PF05103 DivIVA protein AK39_1299 PF08264 Anticodon-binding domain of tRNA AK39_1299 PF00133 tRNA synthetases class I (I, L, M and V) AK39_1299 PF06827 Zinc finger found in FPG and IleRS AK39_130 PF03960 ArsC family AK39_1301 PF01252 Signal peptidase (SPase) II AK39_1302 PF01479 S4 domain AK39_1302 PF00849 RNA pseudouridylate synthase AK39_1303 PF00156 Phosphoribosyl transferase domain AK39_1304 PF00860 Permease family AK39_1305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AK39_1305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AK39_1306 PF01979 Amidohydrolase family AK39_1307 PF00117 Glutamine amidotransferase class-I AK39_1307 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AK39_1308 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK39_1308 PF02142 MGS-like domain AK39_1308 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AK39_1309 PF00175 Oxidoreductase NAD-binding domain AK39_1309 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AK39_131 PF01597 Glycine cleavage H-protein AK39_1310 PF01180 Dihydroorotate dehydrogenase AK39_1311 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AK39_1312 PF00156 Phosphoribosyl transferase domain AK39_1318 PF00557 Metallopeptidase family M24 AK39_1318 PF01321 Creatinase/Prolidase N-terminal domain AK39_132 PF01751 Toprim domain AK39_1320 PF00690 Cation transporter/ATPase, N-terminus AK39_1320 PF00689 Cation transporting ATPase, C-terminus AK39_1321 PF03755 YicC-like family, N-terminal region AK39_1321 PF08340 Domain of unknown function (DUF1732) AK39_1322 PF04025 Domain of unknown function (DUF370) AK39_1323 PF00625 Guanylate kinase AK39_1324 PF01192 RNA polymerase Rpb6 AK39_1325 PF04127 DNA / pantothenate metabolism flavoprotein AK39_1325 PF02441 Flavoprotein AK39_1326 PF18074 Primosomal protein N C-terminal domain AK39_1326 PF00271 Helicase conserved C-terminal domain AK39_1326 PF04851 Type III restriction enzyme, res subunit AK39_1326 PF17764 3′ DNA-binding domain (3′BD) AK39_1326 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AK39_1327 PF01327 Polypeptide deformylase AK39_1328 PF02911 Formyl transferase, C-terminal domain AK39_1328 PF00551 Formyl transferase AK39_1329 PF01189 16S rRNA methyltransferase RsmB/F AK39_1329 PF01029 NusB family AK39_133 PF00085 Thioredoxin AK39_1330 PF04055 Radical SAM superfamily AK39_1332 PF00069 Protein kinase domain AK39_1332 PF03793 PASTA domain AK39_1333 PF03193 RsgA GTPase AK39_1333 PF16745 RsgA N-terminal domain AK39_1334 PF00834 Ribulose-phosphate 3 epimerase family AK39_1335 PF04263 Thiamin pyrophosphokinase, catalytic domain AK39_1335 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AK39_1336 PF00830 Ribosomal L28 family AK39_1337 PF03780 Asp23 family, cell envelope-related function AK39_1338 PF13684 Dihydroxyacetone kinase family AK39_1338 PF02734 DAK2 domain AK39_1339 PF17191 RecG wedge domain AK39_1339 PF00271 Helicase conserved C-terminal domain AK39_1339 PF00270 DEAD/DEAH box helicase AK39_1340 PF03061 Thioesterase superfamily AK39_1341 PF02504 Fatty acid synthesis protein AK39_1342 PF00698 Acyl transferase domain AK39_1344 PF00550 Phosphopantetheine attachment site AK39_1345 PF14622 Ribonuclease-III-like AK39_1345 PF00035 Double-stranded RNA binding motif AK39_1346 PF02463 RecF/RecN/SMC N terminal domain AK39_1346 PF06470 SMC proteins Flexible Hinge Domain AK39_1347 PF02881 SRP54-type protein, helical bundle domain AK39_1347 PF00448 SRP54-type protein, GTPase domain AK39_1348 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AK39_1349 PF02881 SRP54-type protein, helical bundle domain AK39_1349 PF00448 SRP54-type protein, GTPase domain AK39_1349 PF02978 Signal peptide binding domain AK39_135 PF00005 ABC transporter AK39_135 PF09383 NIL domain AK39_1350 PF00886 Ribosomal protein S16 AK39_1352 PF05239 PRC-barrel domain AK39_1352 PF01782 RimM N-terminal domain AK39_1353 PF01746 tRNA (Guanine-1)-methyltransferase AK39_1354 PF01245 Ribosomal protein L19 AK39_1355 PF10502 Signal peptidase, peptidase S26 AK39_1356 PF01926 50S ribosome-binding GTPase AK39_1357 PF01351 Ribonuclease HII AK39_1358 PF00549 CoA-ligase AK39_1358 PF08442 ATP-grasp domain AK39_1359 PF00549 CoA-ligase AK39_1359 PF02629 CoA binding domain AK39_136 PF00528 Binding-protein-dependent transport system inner membrane component AK39_1361 PF01131 DNA topoisomerase AK39_1361 PF01396 Topoisomerase DNA binding C4 zinc finger AK39_1361 PF01751 Toprim domain AK39_1362 PF01134 Glucose inhibited division protein A AK39_1363 PF02899 Phage integrase, N-terminal SAM-like domain AK39_1363 PF00589 Phage integrase family AK39_1364 PF00227 Proteasome subunit AK39_1365 PF10431 C-terminal, D2-small domain, of ClpB protein AK39_1365 PF07724 AAA domain (Cdc48 subfamily) AK39_1365 PF00004 ATPase family associated with various cellular activities (AAA) AK39_1366 PF06018 CodY GAF-like domain AK39_1366 PF08222 CodY helix-turn-helix domain AK39_1367 PF00318 Ribosomal protein S2 AK39_1368 PF00889 Elongation factor TS AK39_1369 PF00696 Amino acid kinase family AK39_137 PF03180 NLPA lipoprotein AK39_1370 PF01765 Ribosome recycling factor AK39_1371 PF01255 Putative undecaprenyl diphosphate synthase AK39_1373 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AK39_1373 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AK39_1373 PF13288 DXP reductoisomerase C-terminal domain AK39_1374 PF17820 PDZ domain AK39_1374 PF02163 Peptidase family M50 AK39_1375 PF03129 Anticodon binding domain AK39_1375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK39_1375 PF04073 Aminoacyl-tRNA editing domain AK39_1376 PF02811 PHP domain AK39_1376 PF00929 Exonuclease AK39_1376 PF14480 DNA polymerase III polC-type N-terminus I AK39_1376 PF14579 Helix-hairpin-helix motif AK39_1376 PF11490 DNA polymerase III polC-type N-terminus II AK39_1376 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK39_1376 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK39_1377 PF17384 RimP C-terminal SH3 domain AK39_1377 PF02576 RimP N-terminal domain AK39_1378 PF00575 S1 RNA binding domain AK39_1378 PF08529 NusA N-terminal domain AK39_1378 PF13184 NusA-like KH domain AK39_1379 PF04296 Protein of unknown function (DUF448) AK39_138 PF03180 NLPA lipoprotein AK39_1380 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AK39_1381 PF11987 Translation-initiation factor 2 AK39_1381 PF00009 Elongation factor Tu GTP binding domain AK39_1381 PF04760 Translation initiation factor IF-2, N-terminal region AK39_1382 PF04456 Protein of unknown function (DUF503) AK39_1383 PF02033 Ribosome-binding factor A AK39_1384 PF01509 TruB family pseudouridylate synthase (N terminal domain) AK39_1384 PF16198 tRNA pseudouridylate synthase B C-terminal domain AK39_1385 PF06574 FAD synthetase AK39_1385 PF01687 Riboflavin kinase AK39_1386 PF00312 Ribosomal protein S15 AK39_1387 PF03725 3' exoribonuclease family, domain 2 AK39_1387 PF00013 KH domain AK39_1387 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AK39_1387 PF01138 3' exoribonuclease family, domain 1 AK39_1387 PF00575 S1 RNA binding domain AK39_1388 PF01522 Polysaccharide deacetylase AK39_1389 PF05193 Peptidase M16 inactive domain AK39_1389 PF00675 Insulinase (Peptidase family M16) AK39_139 PF00005 ABC transporter AK39_1390 PF05239 PRC-barrel domain AK39_1391 PF16924 Dipicolinate synthase subunit A N-terminal domain AK39_1391 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AK39_1392 PF02441 Flavoprotein AK39_1393 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK39_1393 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK39_1394 PF13840 ACT domain AK39_1394 PF00696 Amino acid kinase family AK39_1395 PF00701 Dihydrodipicolinate synthetase family AK39_1396 PF17770 Ribonuclease J C-terminal domain AK39_1396 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AK39_1396 PF00753 Metallo-beta-lactamase superfamily AK39_1397 PF00574 Clp protease AK39_1398 PF14035 YlzJ-like protein AK39_1399 PF17854 FtsK alpha domain AK39_1399 PF09397 Ftsk gamma domain AK39_1399 PF01580 FtsK/SpoIIIE family AK39_140 PF01458 Uncharacterized protein family (UPF0051) AK39_1400 PF07702 UTRA domain AK39_1400 PF00392 Bacterial regulatory proteins, gntR family AK39_1406 PF05193 Peptidase M16 inactive domain AK39_1407 PF05193 Peptidase M16 inactive domain AK39_1407 PF00675 Insulinase (Peptidase family M16) AK39_1409 PF11588 Protein of unknown function (DUF3243) AK39_141 PF00266 Aminotransferase class-V AK39_1410 PF11868 Protein of unknown function (DUF3388) AK39_1411 PF13464 Domain of unknown function (DUF4115) AK39_1412 PF01066 CDP-alcohol phosphatidyltransferase AK39_1413 PF02464 Competence-damaged protein AK39_1413 PF00994 Probable molybdopterin binding domain AK39_1413 PF18146 Damage-inducible protein CinA KH domain AK39_1414 PF00154 recA bacterial DNA recombination protein AK39_1415 PF00154 recA bacterial DNA recombination protein AK39_1416 PF12072 Domain of unknown function (DUF3552) AK39_1416 PF00013 KH domain AK39_1416 PF01966 HD domain AK39_1417 PF13277 YmdB-like protein AK39_1418 PF04232 Stage V sporulation protein S (SpoVS) AK39_1419 PF01244 Membrane dipeptidase (Peptidase family M19) AK39_142 PF01592 NifU-like N terminal domain AK39_1420 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AK39_1420 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AK39_1420 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AK39_1421 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK39_1422 PF00919 Uncharacterized protein family UPF0004 AK39_1422 PF01938 TRAM domain AK39_1422 PF04055 Radical SAM superfamily AK39_1423 PF06133 Control of competence regulator ComK, YlbF/YmcA AK39_1424 PF10628 Outer spore coat protein E (CotE) AK39_1425 PF05190 MutS family domain IV AK39_1425 PF05188 MutS domain II AK39_1425 PF00488 MutS domain V AK39_1425 PF01624 MutS domain I AK39_1425 PF05192 MutS domain III AK39_1426 PF01119 DNA mismatch repair protein, C-terminal domain AK39_1426 PF08676 MutL C terminal dimerisation domain AK39_1427 PF00005 ABC transporter AK39_143 PF01458 Uncharacterized protein family (UPF0051) AK39_1430 PF00072 Response regulator receiver domain AK39_1430 PF00486 Transcriptional regulatory protein, C terminal AK39_1431 PF00512 His Kinase A (phospho-acceptor) domain AK39_1431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_1432 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AK39_1434 PF00350 Dynamin family AK39_1435 PF00884 Sulfatase AK39_1436 PF03275 UDP-galactopyranose mutase AK39_1437 PF07486 Cell Wall Hydrolase AK39_1438 PF00082 Subtilase family AK39_1439 PF00388 Phosphatidylinositol-specific phospholipase C, X domain AK39_144 PF04892 VanZ like family AK39_1441 PF02585 GlcNAc-PI de-N-acetylase AK39_1442 PF00364 Biotin-requiring enzyme AK39_1442 PF00561 alpha/beta hydrolase fold AK39_1443 PF00155 Aminotransferase class I and II AK39_1443 PF00392 Bacterial regulatory proteins, gntR family AK39_1444 PF03788 LrgA family AK39_1445 PF04172 LrgB-like family AK39_1446 PF10787 Uncharacterised protein from bacillus cereus group AK39_1448 PF03707 Bacterial signalling protein N terminal repeat AK39_1448 PF00990 Diguanylate cyclase, GGDEF domain AK39_1448 PF00563 EAL domain AK39_1449 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_145 PF03551 Transcriptional regulator PadR-like family AK39_1450 PF00561 alpha/beta hydrolase fold AK39_1454 PF07687 Peptidase dimerisation domain AK39_1454 PF01546 Peptidase family M20/M25/M40 AK39_1455 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AK39_1455 PF00730 HhH-GPD superfamily base excision DNA repair protein AK39_1456 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AK39_1456 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AK39_1457 PF02805 Metal binding domain of Ada AK39_1457 PF12833 Helix-turn-helix domain AK39_1458 PF03372 Endonuclease/Exonuclease/phosphatase family AK39_146 PF02872 5'-nucleotidase, C-terminal domain AK39_1460 PF01497 Periplasmic binding protein AK39_1461 PF01032 FecCD transport family AK39_1462 PF01032 FecCD transport family AK39_1463 PF00005 ABC transporter AK39_1464 PF00756 Putative esterase AK39_1466 PF02583 Metal-sensitive transcriptional repressor AK39_1467 PF00403 Heavy-metal-associated domain AK39_1468 PF00403 Heavy-metal-associated domain AK39_1469 PF00216 Bacterial DNA-binding protein AK39_147 PF08827 Domain of unknown function (DUF1805) AK39_1470 PF01226 Formate/nitrite transporter AK39_1471 PF10518 TAT (twin-arginine translocation) pathway signal sequence AK39_1471 PF00149 Calcineurin-like phosphoesterase AK39_1473 PF00704 Glycosyl hydrolases family 18 AK39_1473 PF00041 Fibronectin type III domain AK39_1474 PF00324 Amino acid permease AK39_1477 PF04238 Protein of unknown function (DUF420) AK39_1478 PF00465 Iron-containing alcohol dehydrogenase AK39_1479 PF00465 Iron-containing alcohol dehydrogenase AK39_1480 PF08220 DeoR-like helix-turn-helix domain AK39_1480 PF00455 DeoR C terminal sensor domain AK39_1481 PF00294 pfkB family carbohydrate kinase AK39_1482 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK39_1482 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK39_1483 PF06725 3D domain AK39_1483 PF01476 LysM domain AK39_1486 PF17209 Hfq protein AK39_149 PF01551 Peptidase family M23 AK39_1490 PF00004 ATPase family associated with various cellular activities (AAA) AK39_1490 PF17866 AAA lid domain AK39_1491 PF03458 UPF0126 domain AK39_1492 PF13167 GTP-binding GTPase N-terminal AK39_1492 PF01926 50S ribosome-binding GTPase AK39_1492 PF16360 GTP-binding GTPase Middle Region AK39_1493 PF01926 50S ribosome-binding GTPase AK39_1493 PF16360 GTP-binding GTPase Middle Region AK39_1493 PF13167 GTP-binding GTPase N-terminal AK39_1494 PF06838 Methionine gamma-lyase AK39_1495 PF13411 MerR HTH family regulatory protein AK39_1496 PF03951 Glutamine synthetase, beta-Grasp domain AK39_1496 PF00120 Glutamine synthetase, catalytic domain AK39_1497 PF02899 Phage integrase, N-terminal SAM-like domain AK39_1497 PF00589 Phage integrase family AK39_150 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AK39_150 PF04055 Radical SAM superfamily AK39_1501 PF01381 Helix-turn-helix AK39_1516 PF00145 C-5 cytosine-specific DNA methylase AK39_1517 PF02511 Thymidylate synthase complementing protein AK39_1525 PF08281 Sigma-70, region 4 AK39_154 PF10086 YhfC intramembrane metalloprotease AK39_155 PF13411 MerR HTH family regulatory protein AK39_155 PF07739 TipAS antibiotic-recognition domain AK39_1557 PF05105 Bacteriophage holin family AK39_1558 PF01476 LysM domain AK39_1558 PF01510 N-acetylmuramoyl-L-alanine amidase AK39_1558 PF01471 Putative peptidoglycan binding domain AK39_156 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AK39_1566 PF03551 Transcriptional regulator PadR-like family AK39_1569 PF01726 LexA DNA binding domain AK39_1569 PF00717 Peptidase S24-like AK39_157 PF06265 Protein of unknown function (DUF1027) AK39_1570 PF00239 Resolvase, N terminal domain AK39_1571 PF05979 Bacterial protein of unknown function (DUF896) AK39_1572 PF02872 5'-nucleotidase, C-terminal domain AK39_1572 PF00149 Calcineurin-like phosphoesterase AK39_1575 PF00005 ABC transporter AK39_1576 PF00528 Binding-protein-dependent transport system inner membrane component AK39_1577 PF00528 Binding-protein-dependent transport system inner membrane component AK39_1578 PF12323 Helix-turn-helix domain AK39_1578 PF01385 Probable transposase AK39_1578 PF07282 Putative transposase DNA-binding domain AK39_1579 PF00456 Transketolase, thiamine diphosphate binding domain AK39_1579 PF02780 Transketolase, C-terminal domain AK39_1579 PF02779 Transketolase, pyrimidine binding domain AK39_1580 PF10747 Sporulation inhibitor of replication protein SirA AK39_1581 PF03672 Uncharacterised protein family (UPF0154) AK39_1582 PF00664 ABC transporter transmembrane region AK39_1582 PF00005 ABC transporter AK39_1583 PF00664 ABC transporter transmembrane region AK39_1583 PF00005 ABC transporter AK39_1586 PF01510 N-acetylmuramoyl-L-alanine amidase AK39_1586 PF01471 Putative peptidoglycan binding domain AK39_1588 PF01925 Sulfite exporter TauE/SafE AK39_1590 PF00293 NUDIX domain AK39_1590 PF13344 Haloacid dehalogenase-like hydrolase AK39_1591 PF04172 LrgB-like family AK39_1592 PF03788 LrgA family AK39_1593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_1593 PF03466 LysR substrate binding domain AK39_1595 PF02683 Cytochrome C biogenesis protein transmembrane region AK39_1596 PF07301 Protein of unknown function (DUF1453) AK39_160 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AK39_1602 PF11084 Protein of unknown function (DUF2621) AK39_1606 PF01209 ubiE/COQ5 methyltransferase family AK39_1607 PF09021 HutP AK39_1608 PF00221 Aromatic amino acid lyase AK39_1609 PF01175 Urocanase Rossmann-like domain AK39_1609 PF17391 Urocanase N-terminal domain AK39_1609 PF17392 Urocanase C-terminal domain AK39_161 PF01934 Protein of unknown function DUF86 AK39_1610 PF01979 Amidohydrolase family AK39_1611 PF00491 Arginase family AK39_1612 PF02559 CarD-like/TRCF domain AK39_1613 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AK39_1614 PF01645 Conserved region in glutamate synthase AK39_1615 PF00474 Sodium:solute symporter family AK39_1616 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_1617 PF01738 Dienelactone hydrolase family AK39_1618 PF13426 PAS domain AK39_1618 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_1618 PF00512 His Kinase A (phospho-acceptor) domain AK39_1618 PF00989 PAS fold AK39_1618 PF13188 PAS domain AK39_1620 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_1620 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_1626 PF05532 CsbD-like AK39_1629 PF13193 AMP-binding enzyme C-terminal domain AK39_1629 PF00501 AMP-binding enzyme AK39_163 PF13344 Haloacid dehalogenase-like hydrolase AK39_1630 PF02632 BioY family AK39_1631 PF13193 AMP-binding enzyme C-terminal domain AK39_1631 PF00501 AMP-binding enzyme AK39_1632 PF00108 Thiolase, N-terminal domain AK39_1632 PF02803 Thiolase, C-terminal domain AK39_1634 PF13344 Haloacid dehalogenase-like hydrolase AK39_1634 PF00293 NUDIX domain AK39_1635 PF02272 DHHA1 domain AK39_1635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK39_1635 PF01411 tRNA synthetases class II (A) AK39_1637 PF07690 Major Facilitator Superfamily AK39_164 PF02525 Flavodoxin-like fold AK39_1640 PF01522 Polysaccharide deacetylase AK39_1642 PF00694 Aconitase C-terminal domain AK39_1642 PF00330 Aconitase family (aconitate hydratase) AK39_1643 PF00664 ABC transporter transmembrane region AK39_1643 PF00005 ABC transporter AK39_1643 PF03412 Peptidase C39 family AK39_1645 PF00578 AhpC/TSA family AK39_1646 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK39_1646 PF14579 Helix-hairpin-helix motif AK39_1646 PF02811 PHP domain AK39_1646 PF00929 Exonuclease AK39_1646 PF01336 OB-fold nucleic acid binding domain AK39_1646 PF11490 DNA polymerase III polC-type N-terminus II AK39_1646 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK39_1647 PF13040 Fur-regulated basic protein B AK39_1648 PF08177 Small acid-soluble spore protein N family AK39_1650 PF00704 Glycosyl hydrolases family 18 AK39_1650 PF01476 LysM domain AK39_1651 PF03061 Thioesterase superfamily AK39_1652 PF01521 Iron-sulphur cluster biosynthesis AK39_1653 PF02660 Glycerol-3-phosphate acyltransferase AK39_1654 PF13597 Anaerobic ribonucleoside-triphosphate reductase AK39_1654 PF03477 ATP cone domain AK39_1655 PF04055 Radical SAM superfamily AK39_1656 PF00486 Transcriptional regulatory protein, C terminal AK39_1656 PF00072 Response regulator receiver domain AK39_1657 PF13180 PDZ domain AK39_1658 PF13380 CoA binding domain AK39_1659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_1659 PF00204 DNA gyrase B AK39_1659 PF00986 DNA gyrase B subunit, carboxyl terminus AK39_1659 PF01751 Toprim domain AK39_166 PF04608 Phosphatidylglycerophosphatase A AK39_1660 PF00521 DNA gyrase/topoisomerase IV, subunit A AK39_1660 PF03989 DNA gyrase C-terminal domain, beta-propeller AK39_1661 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK39_1661 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK39_1663 PF13732 Domain of unknown function (DUF4162) AK39_1663 PF00005 ABC transporter AK39_1667 PF08281 Sigma-70, region 4 AK39_1667 PF04542 Sigma-70 region 2 AK39_1669 PF03816 Cell envelope-related transcriptional attenuator domain AK39_1670 PF00375 Sodium:dicarboxylate symporter family AK39_1671 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_1672 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_1673 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_1674 PF08241 Methyltransferase domain AK39_1682 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_1684 PF00384 Molybdopterin oxidoreductase AK39_1684 PF00037 4Fe-4S binding domain AK39_1684 PF01568 Molydopterin dinucleotide binding domain AK39_1684 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK39_1684 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK39_1685 PF07849 Protein of unknown function (DUF1641) AK39_1686 PF10057 Uncharacterized conserved protein (DUF2294) AK39_1687 PF02634 FdhD/NarQ family AK39_1688 PF04055 Radical SAM superfamily AK39_1688 PF06463 Molybdenum Cofactor Synthesis C AK39_1689 PF01226 Formate/nitrite transporter AK39_169 PF01106 NifU-like domain AK39_1690 PF00899 ThiF family AK39_1691 PF03453 MoeA N-terminal region (domain I and II) AK39_1691 PF00994 Probable molybdopterin binding domain AK39_1691 PF03454 MoeA C-terminal region (domain IV) AK39_1692 PF02391 MoaE protein AK39_1694 PF10609 NUBPL iron-transfer P-loop NTPase AK39_1697 PF06961 Protein of unknown function (DUF1294) AK39_1698 PF00892 EamA-like transporter family AK39_1699 PF02681 Divergent PAP2 family AK39_170 PF07315 Protein of unknown function (DUF1462) AK39_1700 PF13249 Squalene-hopene cyclase N-terminal domain AK39_1700 PF13243 Squalene-hopene cyclase C-terminal domain AK39_1701 PF14151 YfhD-like protein AK39_1703 PF00171 Aldehyde dehydrogenase family AK39_1705 PF00474 Sodium:solute symporter family AK39_1706 PF01156 Inosine-uridine preferring nucleoside hydrolase AK39_1708 PF00206 Lyase AK39_1708 PF14698 Argininosuccinate lyase C-terminal AK39_1710 PF00106 short chain dehydrogenase AK39_1714 PF00293 NUDIX domain AK39_1716 PF00258 Flavodoxin AK39_1718 PF00313 'Cold-shock' DNA-binding domain AK39_1722 PF13039 Protein of unknown function (DUF3900) AK39_1722 PF13037 Domain of unknown function (DUF3898) AK39_1724 PF04294 VanW like protein AK39_1725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_1727 PF02308 MgtC family AK39_1728 PF01752 Collagenase AK39_1728 PF08453 Peptidase family M9 N-terminal AK39_1728 PF18496 Collagenase G catalytic helper subdomain AK39_1729 PF00378 Enoyl-CoA hydratase/isomerase AK39_1730 PF00535 Glycosyl transferase family 2 AK39_1731 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK39_1732 PF00132 Bacterial transferase hexapeptide (six repeats) AK39_1736 PF02913 FAD linked oxidases, C-terminal domain AK39_1736 PF01565 FAD binding domain AK39_1737 PF01758 Sodium Bile acid symporter family AK39_1739 PF04229 GrpB protein AK39_1740 PF04299 Putative FMN-binding domain AK39_1743 PF18801 response regulator aspartate phosphatase H, N terminal AK39_1744 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AK39_1745 PF00107 Zinc-binding dehydrogenase AK39_1745 PF08240 Alcohol dehydrogenase GroES-like domain AK39_1746 PF01022 Bacterial regulatory protein, arsR family AK39_1747 PF01494 FAD binding domain AK39_1750 PF03009 Glycerophosphoryl diester phosphodiesterase family AK39_1753 PF03466 LysR substrate binding domain AK39_1753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_1754 PF07690 Major Facilitator Superfamily AK39_1756 PF00144 Beta-lactamase AK39_1757 PF01432 Peptidase family M3 AK39_1757 PF08439 Oligopeptidase F AK39_1758 PF00797 N-acetyltransferase AK39_1759 PF09154 Domain of unknown function (DUF1939) AK39_1759 PF00128 Alpha amylase, catalytic domain AK39_1761 PF00488 MutS domain V AK39_1761 PF01713 Smr domain AK39_1764 PF08240 Alcohol dehydrogenase GroES-like domain AK39_1764 PF00107 Zinc-binding dehydrogenase AK39_1765 PF03466 LysR substrate binding domain AK39_1765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_1767 PF10901 Protein of unknown function (DUF2690) AK39_1770 PF13170 Protein of unknown function (DUF4003) AK39_1771 PF02567 Phenazine biosynthesis-like protein AK39_1772 PF05675 Protein of unknown function (DUF817) AK39_1773 PF01032 FecCD transport family AK39_1774 PF01032 FecCD transport family AK39_1776 PF01497 Periplasmic binding protein AK39_178 PF03831 PhnA domain AK39_178 PF08274 PhnA Zinc-Ribbon AK39_1780 PF03600 Citrate transporter AK39_1781 PF08830 Protein of unknown function (DUF1806) AK39_1782 PF02585 GlcNAc-PI de-N-acetylase AK39_1787 PF07690 Major Facilitator Superfamily AK39_1788 PF00324 Amino acid permease AK39_1789 PF08240 Alcohol dehydrogenase GroES-like domain AK39_1789 PF00107 Zinc-binding dehydrogenase AK39_179 PF03649 Uncharacterised protein family (UPF0014) AK39_1790 PF00753 Metallo-beta-lactamase superfamily AK39_1798 PF00144 Beta-lactamase AK39_180 PF00005 ABC transporter AK39_180 PF09383 NIL domain AK39_1803 PF01471 Putative peptidoglycan binding domain AK39_1803 PF01183 Glycosyl hydrolases family 25 AK39_1804 PF00753 Metallo-beta-lactamase superfamily AK39_1807 PF03063 Prismane/CO dehydrogenase family AK39_181 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_1810 PF00005 ABC transporter AK39_1810 PF13732 Domain of unknown function (DUF4162) AK39_1811 PF01061 ABC-2 type transporter AK39_1812 PF05656 Protein of unknown function (DUF805) AK39_1816 PF00440 Bacterial regulatory proteins, tetR family AK39_1818 PF00535 Glycosyl transferase family 2 AK39_1818 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AK39_1819 PF04542 Sigma-70 region 2 AK39_182 PF07293 Protein of unknown function (DUF1450) AK39_1820 PF12791 Anti-sigma factor N-terminus AK39_1822 PF01522 Polysaccharide deacetylase AK39_1822 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AK39_1823 PF01022 Bacterial regulatory protein, arsR family AK39_1826 PF01638 HxlR-like helix-turn-helix AK39_1827 PF02525 Flavodoxin-like fold AK39_1829 PF00501 AMP-binding enzyme AK39_1829 PF13193 AMP-binding enzyme C-terminal domain AK39_183 PF01678 Diaminopimelate epimerase AK39_1833 PF02567 Phenazine biosynthesis-like protein AK39_1839 PF00248 Aldo/keto reductase family AK39_184 PF01521 Iron-sulphur cluster biosynthesis AK39_1840 PF01638 HxlR-like helix-turn-helix AK39_1841 PF01638 HxlR-like helix-turn-helix AK39_1844 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK39_1844 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK39_1845 PF07702 UTRA domain AK39_1845 PF00392 Bacterial regulatory proteins, gntR family AK39_1846 PF01638 HxlR-like helix-turn-helix AK39_1847 PF03960 ArsC family AK39_1853 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_1854 PF03928 Haem-degrading AK39_1856 PF07690 Major Facilitator Superfamily AK39_1857 PF00248 Aldo/keto reductase family AK39_1861 PF03413 Peptidase propeptide and YPEB domain AK39_1861 PF01447 Thermolysin metallopeptidase, catalytic domain AK39_1861 PF07504 Fungalysin/Thermolysin Propeptide Motif AK39_1861 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK39_1862 PF00106 short chain dehydrogenase AK39_1863 PF14765 Polyketide synthase dehydratase AK39_1863 PF08240 Alcohol dehydrogenase GroES-like domain AK39_1863 PF00107 Zinc-binding dehydrogenase AK39_1863 PF00698 Acyl transferase domain AK39_1863 PF16197 Ketoacyl-synthetase C-terminal extension AK39_1863 PF00550 Phosphopantetheine attachment site AK39_1863 PF00109 Beta-ketoacyl synthase, N-terminal domain AK39_1863 PF02801 Beta-ketoacyl synthase, C-terminal domain AK39_1863 PF08659 KR domain AK39_1865 PF00296 Luciferase-like monooxygenase AK39_1866 PF00107 Zinc-binding dehydrogenase AK39_1866 PF08240 Alcohol dehydrogenase GroES-like domain AK39_1867 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AK39_1867 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AK39_1868 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AK39_1868 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AK39_1869 PF00456 Transketolase, thiamine diphosphate binding domain AK39_1869 PF02780 Transketolase, C-terminal domain AK39_1869 PF02779 Transketolase, pyrimidine binding domain AK39_187 PF04463 Protein of unknown function (DUF523) AK39_1870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK39_1870 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AK39_1871 PF00923 Transaldolase/Fructose-6-phosphate aldolase AK39_1872 PF02447 GntP family permease AK39_1873 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_1873 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_1874 PF10282 Lactonase, 7-bladed beta-propeller AK39_1875 PF06906 Protein of unknown function (DUF1272) AK39_1876 PF00805 Pentapeptide repeats (8 copies) AK39_1877 PF00892 EamA-like transporter family AK39_1878 PF13411 MerR HTH family regulatory protein AK39_1879 PF01595 Cyclin M transmembrane N-terminal domain AK39_1879 PF03471 Transporter associated domain AK39_1879 PF00571 CBS domain AK39_1881 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_1885 PF07690 Major Facilitator Superfamily AK39_1887 PF08241 Methyltransferase domain AK39_1891 PF01594 AI-2E family transporter AK39_1892 PF13288 DXP reductoisomerase C-terminal domain AK39_1892 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AK39_1892 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AK39_1893 PF00579 tRNA synthetases class I (W and Y) AK39_1895 PF00005 ABC transporter AK39_1898 PF14602 Hexapeptide repeat of succinyl-transferase AK39_1898 PF12464 Maltose acetyltransferase AK39_1899 PF07690 Major Facilitator Superfamily AK39_190 PF06445 GyrI-like small molecule binding domain AK39_1900 PF00480 ROK family AK39_1901 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_1903 PF13344 Haloacid dehalogenase-like hydrolase AK39_1903 PF00293 NUDIX domain AK39_1908 PF13419 Haloacid dehalogenase-like hydrolase AK39_1913 PF00005 ABC transporter AK39_1917 PF02887 Pyruvate kinase, alpha/beta domain AK39_1917 PF00224 Pyruvate kinase, barrel domain AK39_1917 PF00391 PEP-utilising enzyme, mobile domain AK39_1919 PF00881 Nitroreductase family AK39_192 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_1920 PF01638 HxlR-like helix-turn-helix AK39_1923 PF13393 Histidyl-tRNA synthetase AK39_1923 PF03129 Anticodon binding domain AK39_1924 PF04073 Aminoacyl-tRNA editing domain AK39_1925 PF02660 Glycerol-3-phosphate acyltransferase AK39_1926 PF01381 Helix-turn-helix AK39_1929 PF04231 Endonuclease I AK39_193 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_1930 PF03606 C4-dicarboxylate anaerobic carrier AK39_1931 PF03737 Aldolase/RraA AK39_1934 PF02361 Cobalt transport protein AK39_1935 PF00005 ABC transporter AK39_1937 PF14256 YwiC-like protein AK39_194 PF00293 NUDIX domain AK39_194 PF13344 Haloacid dehalogenase-like hydrolase AK39_1941 PF02525 Flavodoxin-like fold AK39_1943 PF02667 Short chain fatty acid transporter AK39_1944 PF01289 Thiol-activated cytolysin AK39_1944 PF17440 Thiol-activated cytolysin beta sandwich domain AK39_1945 PF00440 Bacterial regulatory proteins, tetR family AK39_1946 PF00893 Small Multidrug Resistance protein AK39_1947 PF17314 Family of unknown function (DUF5360) AK39_1949 PF13396 Phospholipase_D-nuclease N-terminal AK39_1950 PF00005 ABC transporter AK39_1950 PF13732 Domain of unknown function (DUF4162) AK39_1951 PF12679 ABC-2 family transporter protein AK39_1954 PF07690 Major Facilitator Superfamily AK39_1955 PF01047 MarR family AK39_1956 PF12697 Alpha/beta hydrolase family AK39_1957 PF07690 Major Facilitator Superfamily AK39_1958 PF14044 NETI protein AK39_196 PF06725 3D domain AK39_1965 PF00395 S-layer homology domain AK39_1967 PF01804 Penicillin amidase AK39_1968 PF12833 Helix-turn-helix domain AK39_1968 PF01497 Periplasmic binding protein AK39_1969 PF07883 Cupin domain AK39_197 PF02789 Cytosol aminopeptidase family, N-terminal domain AK39_197 PF00883 Cytosol aminopeptidase family, catalytic domain AK39_1972 PF08281 Sigma-70, region 4 AK39_1972 PF04542 Sigma-70 region 2 AK39_1975 PF00266 Aminotransferase class-V AK39_1976 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK39_1976 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK39_1976 PF01842 ACT domain AK39_1979 PF13520 Amino acid permease AK39_198 PF10372 Bacterial membrane-spanning protein N-terminus AK39_198 PF02457 DisA bacterial checkpoint controller nucleotide-binding AK39_1980 PF01037 Lrp/AsnC ligand binding domain AK39_1981 PF00857 Isochorismatase family AK39_1982 PF00586 AIR synthase related protein, N-terminal domain AK39_1982 PF02769 AIR synthase related protein, C-terminal domain AK39_1983 PF07503 HypF finger AK39_1983 PF01300 Telomere recombination AK39_1983 PF17788 HypF Kae1-like domain AK39_1983 PF00708 Acylphosphatase AK39_1984 PF00202 Aminotransferase class-III AK39_1985 PF03315 Serine dehydratase beta chain AK39_1985 PF01842 ACT domain AK39_1986 PF03313 Serine dehydratase alpha chain AK39_1988 PF01022 Bacterial regulatory protein, arsR family AK39_199 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK39_199 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK39_199 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK39_199 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK39_1990 PF00440 Bacterial regulatory proteins, tetR family AK39_1990 PF16859 Tetracyclin repressor-like, C-terminal domain AK39_1991 PF07690 Major Facilitator Superfamily AK39_1992 PF02661 Fic/DOC family AK39_1993 PF01609 Transposase DDE domain AK39_1994 PF08453 Peptidase family M9 N-terminal AK39_1994 PF01752 Collagenase AK39_1994 PF18496 Collagenase G catalytic helper subdomain AK39_1995 PF01554 MatE AK39_1999 PF02743 Cache domain AK39_1999 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_1999 PF00672 HAMP domain AK39_2 PF00121 Triosephosphate isomerase AK39_200 PF00483 Nucleotidyl transferase AK39_2002 PF00817 impB/mucB/samB family AK39_2002 PF11799 impB/mucB/samB family C-terminal domain AK39_2002 PF11798 IMS family HHH motif AK39_2006 PF18801 response regulator aspartate phosphatase H, N terminal AK39_2007 PF00356 Bacterial regulatory proteins, lacI family AK39_2008 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK39_2009 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK39_2010 PF05116 Sucrose-6F-phosphate phosphohydrolase AK39_2011 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK39_2011 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK39_2012 PF07690 Major Facilitator Superfamily AK39_2016 PF02016 LD-carboxypeptidase N-terminal domain AK39_2016 PF17676 LD-carboxypeptidase C-terminal domain AK39_2018 PF03466 LysR substrate binding domain AK39_2018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_2019 PF02754 Cysteine-rich domain AK39_202 PF02632 BioY family AK39_2020 PF02589 LUD domain AK39_2020 PF13183 4Fe-4S dicluster domain AK39_2020 PF11870 Domain of unknown function (DUF3390) AK39_2021 PF02589 LUD domain AK39_2022 PF07690 Major Facilitator Superfamily AK39_2023 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_2023 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_2024 PF04299 Putative FMN-binding domain AK39_2025 PF00583 Acetyltransferase (GNAT) family AK39_2026 PF01047 MarR family AK39_2028 PF00072 Response regulator receiver domain AK39_2028 PF00486 Transcriptional regulatory protein, C terminal AK39_2029 PF00512 His Kinase A (phospho-acceptor) domain AK39_2029 PF00672 HAMP domain AK39_2029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2032 PF02687 FtsX-like permease family AK39_2033 PF00005 ABC transporter AK39_2036 PF04072 Leucine carboxyl methyltransferase AK39_2037 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK39_2037 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK39_2039 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AK39_204 PF03061 Thioesterase superfamily AK39_2040 PF00753 Metallo-beta-lactamase superfamily AK39_2043 PF01381 Helix-turn-helix AK39_2045 PF00144 Beta-lactamase AK39_2049 PF00291 Pyridoxal-phosphate dependent enzyme AK39_205 PF03129 Anticodon binding domain AK39_205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK39_2054 PF00672 HAMP domain AK39_2054 PF00512 His Kinase A (phospho-acceptor) domain AK39_2054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2055 PF00486 Transcriptional regulatory protein, C terminal AK39_2055 PF00072 Response regulator receiver domain AK39_2060 PF07690 Major Facilitator Superfamily AK39_2061 PF00667 FAD binding domain AK39_2061 PF00258 Flavodoxin AK39_2061 PF00175 Oxidoreductase NAD-binding domain AK39_2061 PF00067 Cytochrome P450 AK39_2062 PF12802 MarR family AK39_2065 PF00144 Beta-lactamase AK39_2070 PF01609 Transposase DDE domain AK39_2072 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_2075 PF01037 Lrp/AsnC ligand binding domain AK39_2078 PF00012 Hsp70 protein AK39_208 PF03600 Citrate transporter AK39_2082 PF01022 Bacterial regulatory protein, arsR family AK39_2083 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_2084 PF01758 Sodium Bile acid symporter family AK39_2085 PF01451 Low molecular weight phosphotyrosine protein phosphatase AK39_209 PF00929 Exonuclease AK39_2090 PF00005 ABC transporter AK39_2091 PF00950 ABC 3 transport family AK39_2092 PF01297 Zinc-uptake complex component A periplasmic AK39_2093 PF00561 alpha/beta hydrolase fold AK39_2094 PF01040 UbiA prenyltransferase family AK39_2096 PF10057 Uncharacterized conserved protein (DUF2294) AK39_2097 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AK39_2097 PF00361 Proton-conducting membrane transporter AK39_2098 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AK39_210 PF08810 Kinase associated protein B AK39_2100 PF03441 FAD binding domain of DNA photolyase AK39_2100 PF00875 DNA photolyase AK39_2101 PF03073 TspO/MBR family AK39_2104 PF11181 Heat induced stress protein YflT AK39_2107 PF01544 CorA-like Mg2+ transporter protein AK39_2108 PF01544 CorA-like Mg2+ transporter protein AK39_2109 PF01047 MarR family AK39_2110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_2110 PF03466 LysR substrate binding domain AK39_2112 PF01979 Amidohydrolase family AK39_2115 PF00857 Isochorismatase family AK39_2116 PF00561 alpha/beta hydrolase fold AK39_2117 PF00199 Catalase AK39_2117 PF06628 Catalase-related immune-responsive AK39_2118 PF02872 5'-nucleotidase, C-terminal domain AK39_2118 PF17936 Bacterial Ig domain AK39_2118 PF00149 Calcineurin-like phosphoesterase AK39_2124 PF01235 Sodium:alanine symporter family AK39_2126 PF04960 Glutaminase AK39_2127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2128 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2129 PF08664 YcbB domain AK39_2129 PF00072 Response regulator receiver domain AK39_213 PF00155 Aminotransferase class I and II AK39_2130 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_2131 PF03845 Spore germination protein AK39_2132 PF05504 Spore germination B3/ GerAC like, C-terminal AK39_2133 PF05504 Spore germination B3/ GerAC like, C-terminal AK39_2136 PF03949 Malic enzyme, NAD binding domain AK39_2136 PF00390 Malic enzyme, N-terminal domain AK39_2137 PF13564 DoxX-like family AK39_2138 PF03807 NADP oxidoreductase coenzyme F420-dependent AK39_2138 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK39_2139 PF05525 Branched-chain amino acid transport protein AK39_2140 PF13520 Amino acid permease AK39_2141 PF12826 Helix-hairpin-helix motif AK39_2141 PF08459 UvrC Helix-hairpin-helix N-terminal AK39_2141 PF01541 GIY-YIG catalytic domain AK39_2141 PF02151 UvrB/uvrC motif AK39_2143 PF01381 Helix-turn-helix AK39_2144 PF00710 Asparaginase, N-terminal AK39_2144 PF17763 Glutaminase/Asparaginase C-terminal domain AK39_2145 PF10415 Fumarase C C-terminus AK39_2145 PF00206 Lyase AK39_2148 PF00107 Zinc-binding dehydrogenase AK39_2148 PF13823 Alcohol dehydrogenase GroES-associated AK39_2148 PF08240 Alcohol dehydrogenase GroES-like domain AK39_2149 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK39_215 PF00561 alpha/beta hydrolase fold AK39_215 PF08386 TAP-like protein AK39_2150 PF11553 Protein of unknown function (DUF3231) AK39_2151 PF10710 Protein of unknown function (DUF2512) AK39_2152 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK39_2154 PF00324 Amino acid permease AK39_2157 PF01810 LysE type translocator AK39_2158 PF08892 YqcI/YcgG family AK39_216 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK39_216 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK39_2160 PF07875 Coat F domain AK39_2163 PF00753 Metallo-beta-lactamase superfamily AK39_2164 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AK39_2164 PF00391 PEP-utilising enzyme, mobile domain AK39_2165 PF00440 Bacterial regulatory proteins, tetR family AK39_2167 PF02915 Rubrerythrin AK39_217 PF01037 Lrp/AsnC ligand binding domain AK39_2174 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AK39_2174 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK39_2174 PF02770 Acyl-CoA dehydrogenase, middle domain AK39_2177 PF07454 Stage II sporulation protein P (SpoIIP) AK39_2178 PF03932 CutC family AK39_2179 PF10502 Signal peptidase, peptidase S26 AK39_218 PF00155 Aminotransferase class I and II AK39_2180 PF09339 IclR helix-turn-helix domain AK39_2180 PF01614 Bacterial transcriptional regulator AK39_2181 PF02682 Carboxyltransferase domain, subdomain C and D AK39_2182 PF02626 Carboxyltransferase domain, subdomain A and B AK39_2183 PF03746 LamB/YcsF family AK39_2187 PF01470 Pyroglutamyl peptidase AK39_2188 PF02146 Sir2 family AK39_219 PF00575 S1 RNA binding domain AK39_2191 PF10502 Signal peptidase, peptidase S26 AK39_2193 PF00293 NUDIX domain AK39_2197 PF10898 Protein of unknown function (DUF2716) AK39_2198 PF08713 DNA alkylation repair enzyme AK39_220 PF04070 Domain of unknown function (DUF378) AK39_2200 PF00324 Amino acid permease AK39_2201 PF13302 Acetyltransferase (GNAT) domain AK39_2202 PF01925 Sulfite exporter TauE/SafE AK39_2208 PF00561 alpha/beta hydrolase fold AK39_2209 PF00072 Response regulator receiver domain AK39_2209 PF00486 Transcriptional regulatory protein, C terminal AK39_221 PF00342 Phosphoglucose isomerase AK39_2210 PF00512 His Kinase A (phospho-acceptor) domain AK39_2210 PF00672 HAMP domain AK39_2212 PF13031 Protein of unknown function (DUF3892) AK39_2213 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AK39_2214 PF00392 Bacterial regulatory proteins, gntR family AK39_2214 PF00155 Aminotransferase class I and II AK39_2215 PF00892 EamA-like transporter family AK39_2218 PF00583 Acetyltransferase (GNAT) family AK39_2219 PF12833 Helix-turn-helix domain AK39_222 PF07885 Ion channel AK39_222 PF02254 TrkA-N domain AK39_2224 PF12704 MacB-like periplasmic core domain AK39_2224 PF00005 ABC transporter AK39_2224 PF02687 FtsX-like permease family AK39_2226 PF00392 Bacterial regulatory proteins, gntR family AK39_2227 PF00005 ABC transporter AK39_223 PF08868 YugN-like family AK39_2230 PF00293 NUDIX domain AK39_2232 PF00009 Elongation factor Tu GTP binding domain AK39_2232 PF03764 Elongation factor G, domain IV AK39_2232 PF14492 Elongation Factor G, domain II AK39_2232 PF00679 Elongation factor G C-terminus AK39_2233 PF01047 MarR family AK39_2234 PF00881 Nitroreductase family AK39_2236 PF07726 ATPase family associated with various cellular activities (AAA) AK39_2236 PF17863 AAA lid domain AK39_224 PF02308 MgtC family AK39_2241 PF00144 Beta-lactamase AK39_2242 PF01979 Amidohydrolase family AK39_2242 PF13382 Adenine deaminase C-terminal domain AK39_2244 PF00199 Catalase AK39_2244 PF06628 Catalase-related immune-responsive AK39_2245 PF00202 Aminotransferase class-III AK39_2247 PF00535 Glycosyl transferase family 2 AK39_2249 PF00535 Glycosyl transferase family 2 AK39_2252 PF00535 Glycosyl transferase family 2 AK39_2254 PF07690 Major Facilitator Superfamily AK39_2257 PF07726 ATPase family associated with various cellular activities (AAA) AK39_2257 PF17863 AAA lid domain AK39_2261 PF12681 Glyoxalase-like domain AK39_2262 PF13302 Acetyltransferase (GNAT) domain AK39_2264 PF00072 Response regulator receiver domain AK39_2264 PF04397 LytTr DNA-binding domain AK39_2266 PF10086 YhfC intramembrane metalloprotease AK39_2269 PF13443 Cro/C1-type HTH DNA-binding domain AK39_2270 PF11188 Protein of unknown function (DUF2975) AK39_2271 PF00245 Alkaline phosphatase AK39_2272 PF00487 Fatty acid desaturase AK39_2273 PF01139 tRNA-splicing ligase RtcB AK39_2274 PF00324 Amino acid permease AK39_2275 PF09339 IclR helix-turn-helix domain AK39_2275 PF01614 Bacterial transcriptional regulator AK39_2276 PF01546 Peptidase family M20/M25/M40 AK39_2277 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK39_2277 PF03807 NADP oxidoreductase coenzyme F420-dependent AK39_2278 PF00696 Amino acid kinase family AK39_2278 PF01472 PUA domain AK39_2279 PF00171 Aldehyde dehydrogenase family AK39_2280 PF07662 Na+ dependent nucleoside transporter C-terminus AK39_2280 PF01773 Na+ dependent nucleoside transporter N-terminus AK39_2284 PF03992 Antibiotic biosynthesis monooxygenase AK39_2288 PF01791 DeoC/LacD family aldolase AK39_2290 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_2290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_2291 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_2291 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_2292 PF00325 Bacterial regulatory proteins, crp family AK39_2292 PF04198 Putative sugar-binding domain AK39_2293 PF00005 ABC transporter AK39_2294 PF02653 Branched-chain amino acid transport system / permease component AK39_2295 PF02653 Branched-chain amino acid transport system / permease component AK39_2296 PF13407 Periplasmic binding protein domain AK39_2297 PF06039 Malate:quinone oxidoreductase (Mqo) AK39_2302 PF04542 Sigma-70 region 2 AK39_2302 PF08281 Sigma-70, region 4 AK39_2304 PF01476 LysM domain AK39_2304 PF06725 3D domain AK39_2307 PF01636 Phosphotransferase enzyme family AK39_2312 PF00793 DAHP synthetase I family AK39_2312 PF01817 Chorismate mutase type II AK39_2313 PF01264 Chorismate synthase AK39_2314 PF00155 Aminotransferase class I and II AK39_2315 PF02153 Prephenate dehydrogenase AK39_2315 PF01842 ACT domain AK39_2316 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK39_2318 PF00440 Bacterial regulatory proteins, tetR family AK39_2318 PF16295 Tetracyclin repressor-like, C-terminal domain AK39_2319 PF03176 MMPL family AK39_232 PF05698 Bacterial trigger factor protein (TF) C-terminus AK39_232 PF05697 Bacterial trigger factor protein (TF) AK39_2320 PF03176 MMPL family AK39_2322 PF00005 ABC transporter AK39_2322 PF12848 ABC transporter AK39_2323 PF00884 Sulfatase AK39_2324 PF03741 Integral membrane protein TerC family AK39_2326 PF01522 Polysaccharide deacetylase AK39_2328 PF08713 DNA alkylation repair enzyme AK39_2332 PF12867 DinB superfamily AK39_2333 PF13536 Putative multidrug resistance efflux transporter AK39_2338 PF02522 Aminoglycoside 3-N-acetyltransferase AK39_2347 PF00005 ABC transporter AK39_2348 PF09084 NMT1/THI5 like AK39_2349 PF00528 Binding-protein-dependent transport system inner membrane component AK39_2350 PF00296 Luciferase-like monooxygenase AK39_2352 PF01594 AI-2E family transporter AK39_2361 PF00005 ABC transporter AK39_2366 PF03630 Fumble AK39_2367 PF07977 FabA-like domain AK39_2368 PF00155 Aminotransferase class I and II AK39_2374 PF08241 Methyltransferase domain AK39_2376 PF01156 Inosine-uridine preferring nucleoside hydrolase AK39_2377 PF04226 Transglycosylase associated protein AK39_2381 PF07690 Major Facilitator Superfamily AK39_2382 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_2382 PF12793 Sugar transport-related sRNA regulator N-term AK39_2383 PF13171 Protein of unknown function (DUF4004) AK39_2384 PF04519 Polymer-forming cytoskeletal AK39_2386 PF07690 Major Facilitator Superfamily AK39_2390 PF02645 Uncharacterised protein, DegV family COG1307 AK39_2393 PF08439 Oligopeptidase F AK39_2393 PF01432 Peptidase family M3 AK39_2394 PF03808 Glycosyl transferase WecB/TagA/CpsF family AK39_2396 PF01048 Phosphorylase superfamily AK39_2400 PF00072 Response regulator receiver domain AK39_2400 PF00486 Transcriptional regulatory protein, C terminal AK39_2401 PF00989 PAS fold AK39_2401 PF00512 His Kinase A (phospho-acceptor) domain AK39_2401 PF16736 Single Cache-like AK39_2401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2402 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AK39_2402 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AK39_2407 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK39_2410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK39_2410 PF13378 Enolase C-terminal domain-like AK39_2411 PF00877 NlpC/P60 family AK39_2411 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AK39_2412 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_2413 PF13302 Acetyltransferase (GNAT) domain AK39_2413 PF00958 GMP synthase C terminal domain AK39_2413 PF03352 Methyladenine glycosylase AK39_2413 PF13673 Acetyltransferase (GNAT) domain AK39_2413 PF00117 Glutamine amidotransferase class-I AK39_2414 PF04914 DltD protein AK39_2417 PF09335 SNARE associated Golgi protein AK39_2418 PF08876 Domain of unknown function (DUF1836) AK39_2421 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_2421 PF04324 BFD-like [2Fe-2S] binding domain AK39_2423 PF00158 Sigma-54 interaction domain AK39_2423 PF02954 Bacterial regulatory protein, Fis family AK39_2423 PF13188 PAS domain AK39_2424 PF01266 FAD dependent oxidoreductase AK39_2425 PF05544 Proline racemase AK39_2426 PF05544 Proline racemase AK39_2427 PF00701 Dihydrodipicolinate synthetase family AK39_2428 PF00171 Aldehyde dehydrogenase family AK39_2429 PF01235 Sodium:alanine symporter family AK39_2430 PF02627 Carboxymuconolactone decarboxylase family AK39_2432 PF18416 N-acetylglucosamine binding protein domain 2 AK39_2432 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AK39_2433 PF01368 DHH family AK39_2433 PF02833 DHHA2 domain AK39_2440 PF00270 DEAD/DEAH box helicase AK39_2440 PF09382 RQC domain AK39_2440 PF16124 RecQ zinc-binding AK39_2440 PF00271 Helicase conserved C-terminal domain AK39_2440 PF00570 HRDC domain AK39_2441 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AK39_2444 PF13538 UvrD-like helicase C-terminal domain AK39_2455 PF00753 Metallo-beta-lactamase superfamily AK39_2455 PF13567 Domain of unknown function (DUF4131) AK39_2455 PF03772 Competence protein AK39_2460 PF10990 Protein of unknown function (DUF2809) AK39_2464 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AK39_2464 PF18416 N-acetylglucosamine binding protein domain 2 AK39_2465 PF13673 Acetyltransferase (GNAT) domain AK39_2466 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AK39_2469 PF00574 Clp protease AK39_2470 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AK39_2471 PF00005 ABC transporter AK39_2471 PF00571 CBS domain AK39_2472 PF00528 Binding-protein-dependent transport system inner membrane component AK39_2478 PF04229 GrpB protein AK39_2478 PF13673 Acetyltransferase (GNAT) domain AK39_2479 PF00106 short chain dehydrogenase AK39_2481 PF00676 Dehydrogenase E1 component AK39_2482 PF02780 Transketolase, C-terminal domain AK39_2482 PF02779 Transketolase, pyrimidine binding domain AK39_2483 PF00364 Biotin-requiring enzyme AK39_2483 PF02817 e3 binding domain AK39_2483 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK39_2484 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK39_2484 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_2488 PF02082 Transcriptional regulator AK39_2492 PF00455 DeoR C terminal sensor domain AK39_2492 PF08220 DeoR-like helix-turn-helix domain AK39_2493 PF13302 Acetyltransferase (GNAT) domain AK39_2496 PF02954 Bacterial regulatory protein, Fis family AK39_2496 PF01590 GAF domain AK39_2496 PF00158 Sigma-54 interaction domain AK39_2502 PF13344 Haloacid dehalogenase-like hydrolase AK39_2502 PF00293 NUDIX domain AK39_2503 PF00440 Bacterial regulatory proteins, tetR family AK39_2503 PF08359 YsiA-like protein, C-terminal region AK39_2504 PF00266 Aminotransferase class-V AK39_2505 PF04199 Putative cyclase AK39_2506 PF03301 Tryptophan 2,3-dioxygenase AK39_2509 PF07486 Cell Wall Hydrolase AK39_2509 PF01471 Putative peptidoglycan binding domain AK39_251 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK39_251 PF00056 lactate/malate dehydrogenase, NAD binding domain AK39_2510 PF14620 YpeB sporulation AK39_2510 PF03413 Peptidase propeptide and YPEB domain AK39_2511 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AK39_2514 PF06081 Aromatic acid exporter family member 1 AK39_2519 PF00561 alpha/beta hydrolase fold AK39_252 PF00128 Alpha amylase, catalytic domain AK39_252 PF02806 Alpha amylase, C-terminal all-beta domain AK39_252 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AK39_2520 PF00155 Aminotransferase class I and II AK39_2520 PF00392 Bacterial regulatory proteins, gntR family AK39_2521 PF00892 EamA-like transporter family AK39_2522 PF11638 DnaA N-terminal domain AK39_2522 PF08299 Bacterial dnaA protein helix-turn-helix AK39_2522 PF00308 Bacterial dnaA protein AK39_2523 PF00344 SecY translocase AK39_2527 PF07504 Fungalysin/Thermolysin Propeptide Motif AK39_2527 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK39_2527 PF01447 Thermolysin metallopeptidase, catalytic domain AK39_2527 PF03413 Peptidase propeptide and YPEB domain AK39_253 PF00483 Nucleotidyl transferase AK39_2531 PF00501 AMP-binding enzyme AK39_2531 PF00550 Phosphopantetheine attachment site AK39_2531 PF00668 Condensation domain AK39_2531 PF13193 AMP-binding enzyme C-terminal domain AK39_2532 PF00282 Pyridoxal-dependent decarboxylase conserved domain AK39_2534 PF07859 alpha/beta hydrolase fold AK39_2537 PF13419 Haloacid dehalogenase-like hydrolase AK39_254 PF00483 Nucleotidyl transferase AK39_2542 PF01266 FAD dependent oxidoreductase AK39_255 PF00534 Glycosyl transferases group 1 AK39_255 PF08323 Starch synthase catalytic domain AK39_2550 PF01541 GIY-YIG catalytic domain AK39_2552 PF02673 Bacitracin resistance protein BacA AK39_2555 PF12867 DinB superfamily AK39_2557 PF08000 Bacterial PH domain AK39_2558 PF01734 Patatin-like phospholipase AK39_256 PF00343 Carbohydrate phosphorylase AK39_2564 PF09234 Domain of unknown function (DUF1963) AK39_2568 PF12706 Beta-lactamase superfamily domain AK39_2571 PF00293 NUDIX domain AK39_2572 PF00712 DNA polymerase III beta subunit, N-terminal domain AK39_2572 PF02767 DNA polymerase III beta subunit, central domain AK39_2572 PF02768 DNA polymerase III beta subunit, C-terminal domain AK39_2573 PF09297 NADH pyrophosphatase zinc ribbon domain AK39_2573 PF00293 NUDIX domain AK39_2575 PF07690 Major Facilitator Superfamily AK39_2579 PF00293 NUDIX domain AK39_2581 PF01270 Glycosyl hydrolases family 8 AK39_2582 PF00892 EamA-like transporter family AK39_2583 PF00392 Bacterial regulatory proteins, gntR family AK39_2583 PF00155 Aminotransferase class I and II AK39_2584 PF00155 Aminotransferase class I and II AK39_2584 PF00392 Bacterial regulatory proteins, gntR family AK39_2587 PF03009 Glycerophosphoryl diester phosphodiesterase family AK39_2591 PF07690 Major Facilitator Superfamily AK39_2593 PF00144 Beta-lactamase AK39_2596 PF01965 DJ-1/PfpI family AK39_260 PF00313 'Cold-shock' DNA-binding domain AK39_2602 PF00144 Beta-lactamase AK39_2602 PF11954 Domain of unknown function (DUF3471) AK39_2605 PF08240 Alcohol dehydrogenase GroES-like domain AK39_2605 PF00107 Zinc-binding dehydrogenase AK39_2608 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2608 PF00512 His Kinase A (phospho-acceptor) domain AK39_261 PF01258 Prokaryotic dksA/traR C4-type zinc finger AK39_2611 PF12558 ATP-binding cassette cobalt transporter AK39_2611 PF00005 ABC transporter AK39_2612 PF07155 ECF-type riboflavin transporter, S component AK39_2613 PF01177 Asp/Glu/Hydantoin racemase AK39_2614 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AK39_2616 PF13188 PAS domain AK39_2616 PF13426 PAS domain AK39_2616 PF00512 His Kinase A (phospho-acceptor) domain AK39_2616 PF00989 PAS fold AK39_2616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_262 PF01040 UbiA prenyltransferase family AK39_2620 PF00067 Cytochrome P450 AK39_2622 PF07561 Domain of Unknown Function (DUF1540) AK39_2623 PF00132 Bacterial transferase hexapeptide (six repeats) AK39_2625 PF00067 Cytochrome P450 AK39_263 PF00425 chorismate binding enzyme AK39_264 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK39_264 PF16582 Middle domain of thiamine pyrophosphate AK39_264 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK39_2640 PF03070 TENA/THI-4/PQQC family AK39_2641 PF01820 D-ala D-ala ligase N-terminus AK39_2641 PF07478 D-ala D-ala ligase C-terminus AK39_2642 PF00392 Bacterial regulatory proteins, gntR family AK39_2642 PF00155 Aminotransferase class I and II AK39_2643 PF01842 ACT domain AK39_2643 PF00742 Homoserine dehydrogenase AK39_2643 PF03447 Homoserine dehydrogenase, NAD binding domain AK39_2647 PF02687 FtsX-like permease family AK39_2648 PF02687 FtsX-like permease family AK39_2649 PF00005 ABC transporter AK39_265 PF00561 alpha/beta hydrolase fold AK39_2655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2657 PF00486 Transcriptional regulatory protein, C terminal AK39_2657 PF00072 Response regulator receiver domain AK39_2659 PF07486 Cell Wall Hydrolase AK39_266 PF00378 Enoyl-CoA hydratase/isomerase AK39_2662 PF08245 Mur ligase middle domain AK39_2662 PF02875 Mur ligase family, glutamate ligase domain AK39_2662 PF01225 Mur ligase family, catalytic domain AK39_2663 PF02875 Mur ligase family, glutamate ligase domain AK39_2663 PF08245 Mur ligase middle domain AK39_2663 PF01225 Mur ligase family, catalytic domain AK39_2666 PF08240 Alcohol dehydrogenase GroES-like domain AK39_2666 PF00107 Zinc-binding dehydrogenase AK39_2668 PF00155 Aminotransferase class I and II AK39_2668 PF00392 Bacterial regulatory proteins, gntR family AK39_267 PF13193 AMP-binding enzyme C-terminal domain AK39_267 PF00501 AMP-binding enzyme AK39_2673 PF01636 Phosphotransferase enzyme family AK39_2677 PF07690 Major Facilitator Superfamily AK39_2678 PF09278 MerR, DNA binding AK39_2678 PF00376 MerR family regulatory protein AK39_268 PF13378 Enolase C-terminal domain-like AK39_268 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK39_2683 PF17760 UvrA interaction domain AK39_2683 PF17755 UvrA DNA-binding domain AK39_2683 PF17755 UvrA DNA-binding domain AK39_2683 PF17760 UvrA interaction domain AK39_2687 PF03413 Peptidase propeptide and YPEB domain AK39_2687 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK39_2687 PF07504 Fungalysin/Thermolysin Propeptide Motif AK39_2687 PF01447 Thermolysin metallopeptidase, catalytic domain AK39_2688 PF07504 Fungalysin/Thermolysin Propeptide Motif AK39_2688 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK39_2688 PF03413 Peptidase propeptide and YPEB domain AK39_2688 PF01447 Thermolysin metallopeptidase, catalytic domain AK39_269 PF00486 Transcriptional regulatory protein, C terminal AK39_269 PF00072 Response regulator receiver domain AK39_2692 PF01048 Phosphorylase superfamily AK39_2693 PF13021 Domain of unknown function (DUF3885) AK39_2694 PF01966 HD domain AK39_2695 PF00072 Response regulator receiver domain AK39_2695 PF00486 Transcriptional regulatory protein, C terminal AK39_2696 PF00512 His Kinase A (phospho-acceptor) domain AK39_2696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2697 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_2697 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_2698 PF05163 DinB family AK39_27 PF01156 Inosine-uridine preferring nucleoside hydrolase AK39_270 PF00512 His Kinase A (phospho-acceptor) domain AK39_270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2700 PF00485 Phosphoribulokinase / Uridine kinase family AK39_2701 PF00583 Acetyltransferase (GNAT) family AK39_2703 PF00501 AMP-binding enzyme AK39_2703 PF13193 AMP-binding enzyme C-terminal domain AK39_2703 PF16177 Acetyl-coenzyme A synthetase N-terminus AK39_2704 PF01039 Carboxyl transferase domain AK39_2705 PF00378 Enoyl-CoA hydratase/isomerase AK39_2706 PF00682 HMGL-like AK39_2707 PF00364 Biotin-requiring enzyme AK39_2708 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK39_2708 PF00289 Biotin carboxylase, N-terminal domain AK39_2708 PF02785 Biotin carboxylase C-terminal domain AK39_2709 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK39_2709 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK39_2709 PF02770 Acyl-CoA dehydrogenase, middle domain AK39_271 PF02557 D-alanyl-D-alanine carboxypeptidase AK39_2712 PF08359 YsiA-like protein, C-terminal region AK39_2712 PF00440 Bacterial regulatory proteins, tetR family AK39_2714 PF00005 ABC transporter AK39_2717 PF00581 Rhodanese-like domain AK39_2718 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_2720 PF13302 Acetyltransferase (GNAT) domain AK39_2721 PF00563 EAL domain AK39_2721 PF00990 Diguanylate cyclase, GGDEF domain AK39_2721 PF03707 Bacterial signalling protein N terminal repeat AK39_2724 PF00440 Bacterial regulatory proteins, tetR family AK39_2727 PF01520 N-acetylmuramoyl-L-alanine amidase AK39_2727 PF00395 S-layer homology domain AK39_2729 PF02557 D-alanyl-D-alanine carboxypeptidase AK39_2732 PF01381 Helix-turn-helix AK39_2733 PF18801 response regulator aspartate phosphatase H, N terminal AK39_2737 PF02872 5'-nucleotidase, C-terminal domain AK39_2737 PF00149 Calcineurin-like phosphoesterase AK39_274 PF01979 Amidohydrolase family AK39_2741 PF04962 KduI/IolB family AK39_2742 PF01116 Fructose-bisphosphate aldolase class-II AK39_2743 PF01261 Xylose isomerase-like TIM barrel AK39_2744 PF01261 Xylose isomerase-like TIM barrel AK39_2745 PF00205 Thiamine pyrophosphate enzyme, central domain AK39_2745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK39_2745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK39_2746 PF00171 Aldehyde dehydrogenase family AK39_2747 PF00294 pfkB family carbohydrate kinase AK39_2748 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK39_2748 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK39_2749 PF07690 Major Facilitator Superfamily AK39_275 PF03841 L-seryl-tRNA selenium transferase AK39_2750 PF00356 Bacterial regulatory proteins, lacI family AK39_2751 PF01569 PAP2 superfamily AK39_2755 PF03717 Penicillin-binding Protein dimerisation domain AK39_2755 PF00905 Penicillin binding protein transpeptidase domain AK39_2757 PF04542 Sigma-70 region 2 AK39_2757 PF08281 Sigma-70, region 4 AK39_276 PF07071 KDGP aldolase AK39_2761 PF07687 Peptidase dimerisation domain AK39_2761 PF01546 Peptidase family M20/M25/M40 AK39_2767 PF14171 Toxin SpoIISA, type II toxin-antitoxin system AK39_2768 PF00300 Histidine phosphatase superfamily (branch 1) AK39_2769 PF12802 MarR family AK39_2770 PF00205 Thiamine pyrophosphate enzyme, central domain AK39_2770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK39_2770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK39_2771 PF08241 Methyltransferase domain AK39_2773 PF03848 Tellurite resistance protein TehB AK39_2773 PF09313 Domain of unknown function (DUF1971) AK39_2774 PF02687 FtsX-like permease family AK39_2774 PF12704 MacB-like periplasmic core domain AK39_2774 PF00005 ABC transporter AK39_2778 PF00440 Bacterial regulatory proteins, tetR family AK39_2778 PF17932 Tetracyclin repressor-like, C-terminal domain AK39_2780 PF00271 Helicase conserved C-terminal domain AK39_2780 PF00270 DEAD/DEAH box helicase AK39_2783 PF00753 Metallo-beta-lactamase superfamily AK39_2783 PF16123 Hydroxyacylglutathione hydrolase C-terminus AK39_2785 PF00291 Pyridoxal-phosphate dependent enzyme AK39_2786 PF00266 Aminotransferase class-V AK39_2787 PF02660 Glycerol-3-phosphate acyltransferase AK39_2788 PF01869 BadF/BadG/BcrA/BcrD ATPase family AK39_2789 PF03702 Anhydro-N-acetylmuramic acid kinase AK39_279 PF02447 GntP family permease AK39_2791 PF02378 Phosphotransferase system, EIIC AK39_2793 PF02638 Glycosyl hydrolase-like 10 AK39_2798 PF12680 SnoaL-like domain AK39_2798 PF08281 Sigma-70, region 4 AK39_2798 PF04542 Sigma-70 region 2 AK39_28 PF03788 LrgA family AK39_2804 PF07883 Cupin domain AK39_2804 PF01381 Helix-turn-helix AK39_2805 PF01810 LysE type translocator AK39_2808 PF00005 ABC transporter AK39_2808 PF00664 ABC transporter transmembrane region AK39_2809 PF00664 ABC transporter transmembrane region AK39_2809 PF00005 ABC transporter AK39_281 PF02687 FtsX-like permease family AK39_2812 PF03475 3-alpha domain AK39_2812 PF03473 MOSC domain AK39_2813 PF03466 LysR substrate binding domain AK39_2813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_2816 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK39_2816 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK39_2817 PF03466 LysR substrate binding domain AK39_2817 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_282 PF02687 FtsX-like permease family AK39_2829 PF00313 'Cold-shock' DNA-binding domain AK39_283 PF00005 ABC transporter AK39_2831 PF13302 Acetyltransferase (GNAT) domain AK39_2839 PF00583 Acetyltransferase (GNAT) family AK39_284 PF02687 FtsX-like permease family AK39_2842 PF00302 Chloramphenicol acetyltransferase AK39_2844 PF03176 MMPL family AK39_2846 PF00753 Metallo-beta-lactamase superfamily AK39_2846 PF16123 Hydroxyacylglutathione hydrolase C-terminus AK39_285 PF02687 FtsX-like permease family AK39_2855 PF13649 Methyltransferase domain AK39_2860 PF07690 Major Facilitator Superfamily AK39_2861 PF12146 Serine aminopeptidase, S33 AK39_2865 PF03129 Anticodon binding domain AK39_2865 PF02824 TGS domain AK39_2865 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK39_2865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK39_2866 PF01479 S4 domain AK39_2866 PF00849 RNA pseudouridylate synthase AK39_2867 PF16291 Domain of unknown function (DUF4937 AK39_287 PF02687 FtsX-like permease family AK39_2870 PF01235 Sodium:alanine symporter family AK39_2871 PF00082 Subtilase family AK39_2872 PF05163 DinB family AK39_2874 PF00216 Bacterial DNA-binding protein AK39_2877 PF07690 Major Facilitator Superfamily AK39_2878 PF03621 MbtH-like protein AK39_2879 PF00550 Phosphopantetheine attachment site AK39_2879 PF00668 Condensation domain AK39_2879 PF00501 AMP-binding enzyme AK39_2879 PF00975 Thioesterase domain AK39_2879 PF13193 AMP-binding enzyme C-terminal domain AK39_288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_2880 PF00550 Phosphopantetheine attachment site AK39_2880 PF00857 Isochorismatase family AK39_2881 PF13193 AMP-binding enzyme C-terminal domain AK39_2881 PF00501 AMP-binding enzyme AK39_2882 PF00425 chorismate binding enzyme AK39_2883 PF00106 short chain dehydrogenase AK39_2884 PF07690 Major Facilitator Superfamily AK39_2886 PF01022 Bacterial regulatory protein, arsR family AK39_2888 PF13476 AAA domain AK39_2889 PF12320 Type 5 capsule protein repressor C-terminal domain AK39_2889 PF00149 Calcineurin-like phosphoesterase AK39_289 PF00072 Response regulator receiver domain AK39_289 PF00486 Transcriptional regulatory protein, C terminal AK39_2890 PF10763 Protein of unknown function (DUF2584) AK39_2892 PF00378 Enoyl-CoA hydratase/isomerase AK39_2893 PF01810 LysE type translocator AK39_2894 PF00171 Aldehyde dehydrogenase family AK39_2895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK39_2895 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK39_2896 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK39_2896 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK39_2896 PF02770 Acyl-CoA dehydrogenase, middle domain AK39_2898 PF03972 MmgE/PrpD family AK39_2899 PF00285 Citrate synthase, C-terminal domain AK39_29 PF04172 LrgB-like family AK39_290 PF12833 Helix-turn-helix domain AK39_290 PF06445 GyrI-like small molecule binding domain AK39_2900 PF01521 Iron-sulphur cluster biosynthesis AK39_2901 PF07690 Major Facilitator Superfamily AK39_2902 PF00905 Penicillin binding protein transpeptidase domain AK39_2902 PF00912 Transglycosylase AK39_2906 PF10676 Spore germination protein gerPA/gerPF AK39_291 PF00005 ABC transporter AK39_292 PF02687 FtsX-like permease family AK39_2926 PF04471 Restriction endonuclease AK39_2928 PF00395 S-layer homology domain AK39_2928 PF03424 Carbohydrate binding domain (family 17/28) AK39_2928 PF00150 Cellulase (glycosyl hydrolase family 5) AK39_2929 PF14436 Bacterial EndoU nuclease AK39_2929 PF04740 LXG domain of WXG superfamily AK39_293 PF00398 Ribosomal RNA adenine dimethylase AK39_2931 PF00085 Thioredoxin AK39_2932 PF01569 PAP2 superfamily AK39_2933 PF16916 Dimerisation domain of Zinc Transporter AK39_2933 PF01545 Cation efflux family AK39_2934 PF07070 SpoOM protein AK39_2937 PF14162 YozD-like protein AK39_294 PF09335 SNARE associated Golgi protein AK39_2940 PF06855 YozE SAM-like fold AK39_2941 PF14122 YokU-like protein, putative antitoxin AK39_2942 PF12544 Lysine-2,3-aminomutase AK39_2943 PF00158 Sigma-54 interaction domain AK39_2943 PF02954 Bacterial regulatory protein, Fis family AK39_2943 PF13426 PAS domain AK39_2944 PF00583 Acetyltransferase (GNAT) family AK39_2945 PF01546 Peptidase family M20/M25/M40 AK39_2945 PF07687 Peptidase dimerisation domain AK39_2946 PF01144 Coenzyme A transferase AK39_2947 PF01144 Coenzyme A transferase AK39_2948 PF00202 Aminotransferase class-III AK39_2952 PF07997 Protein of unknown function (DUF1694) AK39_2953 PF00171 Aldehyde dehydrogenase family AK39_2954 PF01595 Cyclin M transmembrane N-terminal domain AK39_2954 PF03471 Transporter associated domain AK39_2954 PF00571 CBS domain AK39_2960 PF13520 Amino acid permease AK39_2961 PF00528 Binding-protein-dependent transport system inner membrane component AK39_2962 PF00005 ABC transporter AK39_2962 PF00571 CBS domain AK39_2965 PF03358 NADPH-dependent FMN reductase AK39_2968 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_2968 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_2969 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_2969 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_297 PF00248 Aldo/keto reductase family AK39_2973 PF00144 Beta-lactamase AK39_2976 PF08240 Alcohol dehydrogenase GroES-like domain AK39_2976 PF00107 Zinc-binding dehydrogenase AK39_2977 PF01418 Helix-turn-helix domain, rpiR family AK39_2977 PF01380 SIS domain AK39_2979 PF00072 Response regulator receiver domain AK39_2979 PF00196 Bacterial regulatory proteins, luxR family AK39_2980 PF07730 Histidine kinase AK39_2980 PF13185 GAF domain AK39_2981 PF00924 Mechanosensitive ion channel AK39_2982 PF00011 Hsp20/alpha crystallin family AK39_2983 PF00293 NUDIX domain AK39_2984 PF00857 Isochorismatase family AK39_2987 PF00881 Nitroreductase family AK39_2988 PF01063 Amino-transferase class IV AK39_2989 PF01497 Periplasmic binding protein AK39_2993 PF13537 Glutamine amidotransferase domain AK39_2993 PF00733 Asparagine synthase AK39_2994 PF00011 Hsp20/alpha crystallin family AK39_2995 PF02630 SCO1/SenC AK39_2997 PF02645 Uncharacterised protein, DegV family COG1307 AK39_2999 PF00902 Sec-independent protein translocase protein (TatC) AK39_3 PF01676 Metalloenzyme superfamily AK39_3 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AK39_30 PF03840 Preprotein translocase SecG subunit AK39_3000 PF02416 mttA/Hcf106 family AK39_3001 PF03006 Haemolysin-III related AK39_3002 PF01553 Acyltransferase AK39_3003 PF02525 Flavodoxin-like fold AK39_3004 PF00905 Penicillin binding protein transpeptidase domain AK39_3004 PF03717 Penicillin-binding Protein dimerisation domain AK39_3004 PF05223 NTF2-like N-terminal transpeptidase domain AK39_3005 PF00186 Dihydrofolate reductase AK39_3006 PF00303 Thymidylate synthase AK39_3007 PF07930 D-aminopeptidase, domain B AK39_3007 PF00144 Beta-lactamase AK39_301 PF00781 Diacylglycerol kinase catalytic domain AK39_3011 PF13419 Haloacid dehalogenase-like hydrolase AK39_3012 PF14005 YpjP-like protein AK39_3013 PF05975 Bacterial ABC transporter protein EcsB AK39_3014 PF00005 ABC transporter AK39_3018 PF00583 Acetyltransferase (GNAT) family AK39_3019 PF01980 tRNA-methyltransferase O AK39_302 PF00156 Phosphoribosyl transferase domain AK39_3020 PF01177 Asp/Glu/Hydantoin racemase AK39_3021 PF00465 Iron-containing alcohol dehydrogenase AK39_3025 PF10997 Alternate to MurJ AK39_3028 PF00209 Sodium:neurotransmitter symporter family AK39_3031 PF00672 HAMP domain AK39_3031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3031 PF00512 His Kinase A (phospho-acceptor) domain AK39_3032 PF00072 Response regulator receiver domain AK39_3032 PF00486 Transcriptional regulatory protein, C terminal AK39_3033 PF00939 Sodium:sulfate symporter transmembrane region AK39_3034 PF02595 Glycerate kinase family AK39_3053 PF01580 FtsK/SpoIIIE family AK39_3053 PF12538 DNA transporter AK39_3057 PF00152 tRNA synthetases class II (D, K and N) AK39_3057 PF01336 OB-fold nucleic acid binding domain AK39_3058 PF01225 Mur ligase family, catalytic domain AK39_3058 PF08245 Mur ligase middle domain AK39_3058 PF02875 Mur ligase family, glutamate ligase domain AK39_3061 PF00133 tRNA synthetases class I (I, L, M and V) AK39_3061 PF08264 Anticodon-binding domain of tRNA AK39_3067 PF05746 DALR anticodon binding domain AK39_3067 PF00750 tRNA synthetases class I (R) AK39_3067 PF03485 Arginyl tRNA synthetase N terminal domain AK39_3068 PF04445 Putative SAM-dependent methyltransferase AK39_3069 PF06491 Disulphide isomerase AK39_307 PF00072 Response regulator receiver domain AK39_307 PF00486 Transcriptional regulatory protein, C terminal AK39_3071 PF13769 Virulence factor AK39_3071 PF08712 Scaffold protein Nfu/NifU N terminal AK39_3072 PF01494 FAD binding domain AK39_3073 PF01494 FAD binding domain AK39_3074 PF00440 Bacterial regulatory proteins, tetR family AK39_3075 PF00436 Single-strand binding protein family AK39_3078 PF00005 ABC transporter AK39_3078 PF16326 ABC transporter C-terminal domain AK39_3078 PF12848 ABC transporter AK39_3079 PF01966 HD domain AK39_308 PF00672 HAMP domain AK39_308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_308 PF00512 His Kinase A (phospho-acceptor) domain AK39_3082 PF01510 N-acetylmuramoyl-L-alanine amidase AK39_3085 PF04232 Stage V sporulation protein S (SpoVS) AK39_309 PF09515 Thiamine transporter protein (Thia_YuaJ) AK39_3092 PF01814 Hemerythrin HHE cation binding domain AK39_3092 PF04405 Domain of Unknown function (DUF542) AK39_3093 PF18267 Rubredoxin NAD+ reductase C-terminal domain AK39_3093 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_3093 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AK39_3093 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AK39_3093 PF04324 BFD-like [2Fe-2S] binding domain AK39_3094 PF00355 Rieske [2Fe-2S] domain AK39_3095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK39_3096 PF01903 CbiX AK39_31 PF12146 Serine aminopeptidase, S33 AK39_3100 PF07690 Major Facilitator Superfamily AK39_3102 PF02391 MoaE protein AK39_3103 PF03453 MoeA N-terminal region (domain I and II) AK39_3103 PF00994 Probable molybdopterin binding domain AK39_3103 PF03454 MoeA C-terminal region (domain IV) AK39_3104 PF00899 ThiF family AK39_3105 PF04055 Radical SAM superfamily AK39_3105 PF06463 Molybdenum Cofactor Synthesis C AK39_3106 PF00325 Bacterial regulatory proteins, crp family AK39_3106 PF00027 Cyclic nucleotide-binding domain AK39_3108 PF00005 ABC transporter AK39_3109 PF00155 Aminotransferase class I and II AK39_3109 PF00392 Bacterial regulatory proteins, gntR family AK39_311 PF17910 FeoB cytosolic helical domain AK39_311 PF02421 Ferrous iron transport protein B AK39_311 PF07664 Ferrous iron transport protein B C terminus AK39_311 PF07670 Nucleoside recognition AK39_3110 PF02665 Nitrate reductase gamma subunit AK39_3111 PF02613 Nitrate reductase delta subunit AK39_3112 PF13247 4Fe-4S dicluster domain AK39_3112 PF14711 Respiratory nitrate reductase beta C-terminal AK39_3113 PF00384 Molybdopterin oxidoreductase AK39_3113 PF14710 Respiratory nitrate reductase alpha N-terminal AK39_3113 PF01568 Molydopterin dinucleotide binding domain AK39_3116 PF17863 AAA lid domain AK39_3116 PF07726 ATPase family associated with various cellular activities (AAA) AK39_3117 PF01882 Protein of unknown function DUF58 AK39_3118 PF13559 Domain of unknown function (DUF4129) AK39_3118 PF11992 Domain of unknown function (DUF3488) AK39_3118 PF01841 Transglutaminase-like superfamily AK39_3119 PF00255 Glutathione peroxidase AK39_3124 PF04542 Sigma-70 region 2 AK39_3124 PF08281 Sigma-70, region 4 AK39_3125 PF00107 Zinc-binding dehydrogenase AK39_3125 PF08240 Alcohol dehydrogenase GroES-like domain AK39_3127 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_3128 PF01261 Xylose isomerase-like TIM barrel AK39_3129 PF00271 Helicase conserved C-terminal domain AK39_3129 PF00270 DEAD/DEAH box helicase AK39_3131 PF01268 Formate--tetrahydrofolate ligase AK39_3132 PF01209 ubiE/COQ5 methyltransferase family AK39_3137 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AK39_3146 PF00583 Acetyltransferase (GNAT) family AK39_315 PF04012 PspA/IM30 family AK39_3152 PF00155 Aminotransferase class I and II AK39_3152 PF00392 Bacterial regulatory proteins, gntR family AK39_3153 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_3153 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_3154 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AK39_3158 PF00842 Alanine racemase, C-terminal domain AK39_3158 PF01168 Alanine racemase, N-terminal domain AK39_3161 PF00300 Histidine phosphatase superfamily (branch 1) AK39_3162 PF01145 SPFH domain / Band 7 family AK39_3164 PF07690 Major Facilitator Superfamily AK39_3165 PF01425 Amidase AK39_3167 PF02557 D-alanyl-D-alanine carboxypeptidase AK39_3169 PF07454 Stage II sporulation protein P (SpoIIP) AK39_3172 PF01588 Putative tRNA binding domain AK39_3173 PF05525 Branched-chain amino acid transport protein AK39_3176 PF03471 Transporter associated domain AK39_3176 PF00571 CBS domain AK39_3176 PF01595 Cyclin M transmembrane N-terminal domain AK39_3177 PF04306 Protein of unknown function (DUF456) AK39_3178 PF13460 NAD(P)H-binding AK39_3181 PF13396 Phospholipase_D-nuclease N-terminal AK39_3181 PF13091 PLD-like domain AK39_3182 PF03061 Thioesterase superfamily AK39_3183 PF09323 Domain of unknown function (DUF1980) AK39_3184 PF03773 Predicted permease AK39_3186 PF01943 Polysaccharide biosynthesis protein AK39_3186 PF14667 Polysaccharide biosynthesis C-terminal domain AK39_3187 PF09335 SNARE associated Golgi protein AK39_3188 PF00293 NUDIX domain AK39_3189 PF08757 CotH kinase protein AK39_3191 PF00300 Histidine phosphatase superfamily (branch 1) AK39_3193 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_3194 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_3196 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AK39_3196 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AK39_3197 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AK39_3198 PF13460 NAD(P)H-binding AK39_32 PF00773 RNB domain AK39_32 PF00575 S1 RNA binding domain AK39_32 PF17876 Cold shock domain AK39_32 PF08206 Ribonuclease B OB domain AK39_320 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_320 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_3200 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AK39_3200 PF01297 Zinc-uptake complex component A periplasmic AK39_3211 PF00583 Acetyltransferase (GNAT) family AK39_3212 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK39_3212 PF07683 Cobalamin synthesis protein cobW C-terminal domain AK39_3213 PF00248 Aldo/keto reductase family AK39_3215 PF01593 Flavin containing amine oxidoreductase AK39_3217 PF00296 Luciferase-like monooxygenase AK39_3220 PF00210 Ferritin-like domain AK39_3224 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_3224 PF00672 HAMP domain AK39_3224 PF02743 Cache domain AK39_3225 PF03193 RsgA GTPase AK39_3229 PF07690 Major Facilitator Superfamily AK39_323 PF10676 Spore germination protein gerPA/gerPF AK39_3230 PF00248 Aldo/keto reductase family AK39_3231 PF01022 Bacterial regulatory protein, arsR family AK39_3232 PF00082 Subtilase family AK39_3233 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK39_3233 PF18277 AbrB C-terminal domain AK39_3234 PF02687 FtsX-like permease family AK39_3235 PF02687 FtsX-like permease family AK39_3236 PF02540 NAD synthase AK39_3237 PF00293 NUDIX domain AK39_3237 PF13344 Haloacid dehalogenase-like hydrolase AK39_324 PF02322 Cytochrome bd terminal oxidase subunit II AK39_3242 PF01734 Patatin-like phospholipase AK39_3244 PF01810 LysE type translocator AK39_3245 PF07690 Major Facilitator Superfamily AK39_3246 PF07690 Major Facilitator Superfamily AK39_3247 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK39_3248 PF01261 Xylose isomerase-like TIM barrel AK39_325 PF01654 Cytochrome bd terminal oxidase subunit I AK39_3251 PF13193 AMP-binding enzyme C-terminal domain AK39_3251 PF00501 AMP-binding enzyme AK39_3252 PF06276 Ferric iron reductase FhuF-like transporter AK39_3252 PF04183 IucA / IucC family AK39_3253 PF06276 Ferric iron reductase FhuF-like transporter AK39_3253 PF04183 IucA / IucC family AK39_3254 PF00583 Acetyltransferase (GNAT) family AK39_3255 PF02308 MgtC family AK39_3257 PF01522 Polysaccharide deacetylase AK39_3258 PF16736 Single Cache-like AK39_3258 PF00989 PAS fold AK39_3258 PF00512 His Kinase A (phospho-acceptor) domain AK39_3258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3259 PF00072 Response regulator receiver domain AK39_3259 PF00486 Transcriptional regulatory protein, C terminal AK39_326 PF01809 Putative membrane protein insertion efficiency factor AK39_3261 PF03816 Cell envelope-related transcriptional attenuator domain AK39_3264 PF08544 GHMP kinases C terminal AK39_3264 PF00288 GHMP kinases N terminal domain AK39_3265 PF00291 Pyridoxal-phosphate dependent enzyme AK39_3266 PF01842 ACT domain AK39_3266 PF00742 Homoserine dehydrogenase AK39_3266 PF03447 Homoserine dehydrogenase, NAD binding domain AK39_327 PF00484 Carbonic anhydrase AK39_3270 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AK39_3270 PF01522 Polysaccharide deacetylase AK39_3271 PF04439 Streptomycin adenylyltransferase AK39_3272 PF00106 short chain dehydrogenase AK39_3274 PF00512 His Kinase A (phospho-acceptor) domain AK39_3274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3274 PF00989 PAS fold AK39_3274 PF16736 Single Cache-like AK39_3275 PF00486 Transcriptional regulatory protein, C terminal AK39_3275 PF00072 Response regulator receiver domain AK39_3276 PF00005 ABC transporter AK39_3276 PF00664 ABC transporter transmembrane region AK39_3277 PF00664 ABC transporter transmembrane region AK39_3277 PF00005 ABC transporter AK39_3279 PF01476 LysM domain AK39_3279 PF00877 NlpC/P60 family AK39_328 PF02664 S-Ribosylhomocysteinase (LuxS) AK39_3281 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_3281 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_3282 PF02016 LD-carboxypeptidase N-terminal domain AK39_3282 PF17676 LD-carboxypeptidase C-terminal domain AK39_3285 PF00005 ABC transporter AK39_3285 PF00664 ABC transporter transmembrane region AK39_3286 PF00664 ABC transporter transmembrane region AK39_3286 PF00005 ABC transporter AK39_3287 PF02322 Cytochrome bd terminal oxidase subunit II AK39_3288 PF01654 Cytochrome bd terminal oxidase subunit I AK39_3290 PF01047 MarR family AK39_3294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_3294 PF03466 LysR substrate binding domain AK39_3296 PF02653 Branched-chain amino acid transport system / permease component AK39_3297 PF00005 ABC transporter AK39_3298 PF12399 Branched-chain amino acid ATP-binding cassette transporter AK39_3298 PF00005 ABC transporter AK39_33 PF01668 SmpB protein AK39_3300 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK39_3300 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK39_3301 PF01575 MaoC like domain AK39_3302 PF13193 AMP-binding enzyme C-terminal domain AK39_3302 PF00501 AMP-binding enzyme AK39_3305 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK39_3305 PF07683 Cobalamin synthesis protein cobW C-terminal domain AK39_3306 PF01593 Flavin containing amine oxidoreductase AK39_3307 PF00056 lactate/malate dehydrogenase, NAD binding domain AK39_3307 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK39_3308 PF01594 AI-2E family transporter AK39_3309 PF01425 Amidase AK39_3311 PF00881 Nitroreductase family AK39_3312 PF01323 DSBA-like thioredoxin domain AK39_3313 PF02082 Transcriptional regulator AK39_3314 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_3314 PF03466 LysR substrate binding domain AK39_3315 PF00892 EamA-like transporter family AK39_3317 PF07987 Domain of unkown function (DUF1775) AK39_3318 PF13115 YtkA-like AK39_3318 PF05425 Copper resistance protein D AK39_3318 PF04234 CopC domain AK39_332 PF00293 NUDIX domain AK39_3320 PF05525 Branched-chain amino acid transport protein AK39_3321 PF05525 Branched-chain amino acid transport protein AK39_3322 PF02525 Flavodoxin-like fold AK39_3327 PF01551 Peptidase family M23 AK39_3328 PF07732 Multicopper oxidase AK39_3328 PF07731 Multicopper oxidase AK39_3329 PF00557 Metallopeptidase family M24 AK39_3329 PF05195 Aminopeptidase P, N-terminal domain AK39_3333 PF05979 Bacterial protein of unknown function (DUF896) AK39_3334 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK39_3335 PF02885 Glycosyl transferase family, helical bundle domain AK39_3335 PF00591 Glycosyl transferase family, a/b domain AK39_3335 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AK39_3336 PF01773 Na+ dependent nucleoside transporter N-terminus AK39_3336 PF07662 Na+ dependent nucleoside transporter C-terminus AK39_3337 PF01791 DeoC/LacD family aldolase AK39_3338 PF04198 Putative sugar-binding domain AK39_3340 PF05791 Bacillus haemolytic enterotoxin (HBL) AK39_3341 PF05791 Bacillus haemolytic enterotoxin (HBL) AK39_3343 PF13520 Amino acid permease AK39_3344 PF13520 Amino acid permease AK39_3346 PF08546 Ketopantoate reductase PanE/ApbA C terminal AK39_3346 PF02558 Ketopantoate reductase PanE/ApbA AK39_3349 PF01566 Natural resistance-associated macrophage protein AK39_3351 PF00512 His Kinase A (phospho-acceptor) domain AK39_3351 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3353 PF00486 Transcriptional regulatory protein, C terminal AK39_3353 PF00072 Response regulator receiver domain AK39_3354 PF13302 Acetyltransferase (GNAT) domain AK39_3355 PF13186 Iron-sulfur cluster-binding domain AK39_3355 PF04055 Radical SAM superfamily AK39_3360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_3361 PF13026 Protein of unknown function (DUF3887) AK39_3361 PF12146 Serine aminopeptidase, S33 AK39_3362 PF01979 Amidohydrolase family AK39_3365 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AK39_3365 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AK39_3366 PF00072 Response regulator receiver domain AK39_3366 PF04397 LytTr DNA-binding domain AK39_3368 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AK39_3369 PF07690 Major Facilitator Superfamily AK39_3372 PF09587 Bacterial capsule synthesis protein PGA_cap AK39_3374 PF00291 Pyridoxal-phosphate dependent enzyme AK39_3374 PF00585 C-terminal regulatory domain of Threonine dehydratase AK39_3375 PF00920 Dehydratase family AK39_3376 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AK39_3376 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AK39_3377 PF10369 Small subunit of acetolactate synthase AK39_3378 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK39_3378 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK39_3378 PF00205 Thiamine pyrophosphate enzyme, central domain AK39_3379 PF01063 Amino-transferase class IV AK39_338 PF00528 Binding-protein-dependent transport system inner membrane component AK39_3381 PF01625 Peptide methionine sulfoxide reductase AK39_3385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK39_3385 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK39_3388 PF04239 Protein of unknown function (DUF421) AK39_339 PF00005 ABC transporter AK39_3390 PF01522 Polysaccharide deacetylase AK39_3390 PF03422 Carbohydrate binding module (family 6) AK39_3390 PF00457 Glycosyl hydrolases family 11 AK39_3391 PF00209 Sodium:neurotransmitter symporter family AK39_3392 PF01943 Polysaccharide biosynthesis protein AK39_3392 PF14667 Polysaccharide biosynthesis C-terminal domain AK39_3395 PF00291 Pyridoxal-phosphate dependent enzyme AK39_3396 PF07690 Major Facilitator Superfamily AK39_3397 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_3399 PF16360 GTP-binding GTPase Middle Region AK39_3399 PF13167 GTP-binding GTPase N-terminal AK39_3399 PF01926 50S ribosome-binding GTPase AK39_34 PF00486 Transcriptional regulatory protein, C terminal AK39_34 PF00072 Response regulator receiver domain AK39_3401 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK39_3401 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK39_3402 PF07690 Major Facilitator Superfamily AK39_3403 PF07690 Major Facilitator Superfamily AK39_3404 PF03976 Polyphosphate kinase 2 (PPK2) AK39_3405 PF02554 Carbon starvation protein CstA AK39_3408 PF07690 Major Facilitator Superfamily AK39_3410 PF02368 Bacterial Ig-like domain (group 2) AK39_3410 PF00395 S-layer homology domain AK39_3410 PF13205 Bacterial Ig-like domain AK39_3411 PF00293 NUDIX domain AK39_3412 PF14158 YndJ-like protein AK39_3413 PF13761 Domain of unknown function (DUF4166) AK39_3416 PF00696 Amino acid kinase family AK39_3416 PF13840 ACT domain AK39_3420 PF03590 Aspartate-ammonia ligase AK39_3422 PF00271 Helicase conserved C-terminal domain AK39_3422 PF00176 SNF2 family N-terminal domain AK39_3422 PF04434 SWIM zinc finger AK39_3423 PF08664 YcbB domain AK39_3423 PF00072 Response regulator receiver domain AK39_3424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3425 PF00390 Malic enzyme, N-terminal domain AK39_3425 PF03949 Malic enzyme, NAD binding domain AK39_3426 PF10415 Fumarase C C-terminus AK39_3426 PF00206 Lyase AK39_3427 PF00375 Sodium:dicarboxylate symporter family AK39_3428 PF00696 Amino acid kinase family AK39_3429 PF13091 PLD-like domain AK39_3432 PF00005 ABC transporter AK39_3433 PF13185 GAF domain AK39_3433 PF07730 Histidine kinase AK39_3433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3433 PF13492 GAF domain AK39_3434 PF00196 Bacterial regulatory proteins, luxR family AK39_3434 PF00072 Response regulator receiver domain AK39_3439 PF04286 Protein of unknown function (DUF445) AK39_344 PF00884 Sulfatase AK39_3440 PF00291 Pyridoxal-phosphate dependent enzyme AK39_3445 PF00578 AhpC/TSA family AK39_3446 PF02683 Cytochrome C biogenesis protein transmembrane region AK39_345 PF00561 alpha/beta hydrolase fold AK39_345 PF08386 TAP-like protein AK39_3450 PF03575 Peptidase family S51 AK39_3451 PF01554 MatE AK39_3452 PF01554 MatE AK39_3456 PF10415 Fumarase C C-terminus AK39_3456 PF00206 Lyase AK39_3457 PF03553 Na+/H+ antiporter family AK39_3458 PF00535 Glycosyl transferase family 2 AK39_346 PF00512 His Kinase A (phospho-acceptor) domain AK39_346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_346 PF00989 PAS fold AK39_346 PF08447 PAS fold AK39_3460 PF03773 Predicted permease AK39_3461 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK39_3461 PF07683 Cobalamin synthesis protein cobW C-terminal domain AK39_3462 PF00892 EamA-like transporter family AK39_3463 PF07729 FCD domain AK39_3463 PF00392 Bacterial regulatory proteins, gntR family AK39_3465 PF16916 Dimerisation domain of Zinc Transporter AK39_3465 PF01545 Cation efflux family AK39_3469 PF00733 Asparagine synthase AK39_3469 PF13537 Glutamine amidotransferase domain AK39_347 PF00989 PAS fold AK39_347 PF13188 PAS domain AK39_347 PF13426 PAS domain AK39_347 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_347 PF00512 His Kinase A (phospho-acceptor) domain AK39_3476 PF00300 Histidine phosphatase superfamily (branch 1) AK39_3478 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_3478 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_348 PF01784 NIF3 (NGG1p interacting factor 3) AK39_3481 PF10787 Uncharacterised protein from bacillus cereus group AK39_3483 PF00753 Metallo-beta-lactamase superfamily AK39_3483 PF12706 Beta-lactamase superfamily domain AK39_3484 PF00528 Binding-protein-dependent transport system inner membrane component AK39_3486 PF08402 TOBE domain AK39_3486 PF00005 ABC transporter AK39_3491 PF08141 Small acid-soluble spore protein H family AK39_3492 PF03992 Antibiotic biosynthesis monooxygenase AK39_3495 PF17329 Family of unknown function (DUF5367) AK39_3496 PF00440 Bacterial regulatory proteins, tetR family AK39_3496 PF17932 Tetracyclin repressor-like, C-terminal domain AK39_3501 PF02272 DHHA1 domain AK39_3501 PF01411 tRNA synthetases class II (A) AK39_3501 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK39_3502 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK39_3502 PF00460 Flagella basal body rod protein AK39_3505 PF00771 FHIPEP family AK39_3506 PF01312 FlhB HrpN YscU SpaS Family AK39_3508 PF01313 Bacterial export proteins, family 3 AK39_3509 PF00813 FliP family AK39_3511 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK39_3511 PF04509 CheC-like family AK39_3513 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK39_3513 PF02154 Flagellar motor switch protein FliM AK39_3514 PF01464 Transglycosylase SLT domain AK39_3515 PF00700 Bacterial flagellin C-terminal helical region AK39_3515 PF00669 Bacterial flagellin N-terminal helical region AK39_3520 PF13181 Tetratricopeptide repeat AK39_3520 PF00535 Glycosyl transferase family 2 AK39_3526 PF00535 Glycosyl transferase family 2 AK39_3527 PF12181 DNA binding domain of the motility gene repressor (MogR) AK39_3528 PF01584 CheW-like domain AK39_3528 PF00072 Response regulator receiver domain AK39_3532 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK39_3532 PF00460 Flagella basal body rod protein AK39_3532 PF07559 Flagellar basal body protein FlaE AK39_3537 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK39_3537 PF18269 T3SS EscN ATPase C-terminal domain AK39_3537 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK39_3539 PF01706 FliG C-terminal domain AK39_3539 PF14841 FliG middle domain AK39_3539 PF14842 FliG N-terminal domain AK39_354 PF01293 Phosphoenolpyruvate carboxykinase AK39_3541 PF01514 Secretory protein of YscJ/FliF family AK39_3541 PF08345 Flagellar M-ring protein C-terminal AK39_3542 PF02049 Flagellar hook-basal body complex protein FliE AK39_3543 PF00460 Flagella basal body rod protein AK39_3543 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK39_3544 PF00460 Flagella basal body rod protein AK39_3549 PF00700 Bacterial flagellin C-terminal helical region AK39_3549 PF00669 Bacterial flagellin N-terminal helical region AK39_355 PF00438 S-adenosylmethionine synthetase, N-terminal domain AK39_355 PF02772 S-adenosylmethionine synthetase, central domain AK39_355 PF02773 S-adenosylmethionine synthetase, C-terminal domain AK39_3550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK39_3550 PF00460 Flagella basal body rod protein AK39_3554 PF01739 CheR methyltransferase, SAM binding domain AK39_3554 PF03705 CheR methyltransferase, all-alpha domain AK39_3557 PF04509 CheC-like family AK39_3557 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK39_3558 PF01584 CheW-like domain AK39_3558 PF02895 Signal transducing histidine kinase, homodimeric domain AK39_3558 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3558 PF01627 Hpt domain AK39_3558 PF07194 P2 response regulator binding domain AK39_3559 PF07194 P2 response regulator binding domain AK39_3559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3559 PF02895 Signal transducing histidine kinase, homodimeric domain AK39_3559 PF01627 Hpt domain AK39_3559 PF01584 CheW-like domain AK39_3560 PF00072 Response regulator receiver domain AK39_3561 PF00691 OmpA family AK39_3561 PF13677 Membrane MotB of proton-channel complex MotA/MotB AK39_3562 PF01618 MotA/TolQ/ExbB proton channel family AK39_3564 PF17209 Hfq protein AK39_3573 PF00881 Nitroreductase family AK39_3575 PF02698 DUF218 domain AK39_3576 PF04239 Protein of unknown function (DUF421) AK39_358 PF00994 Probable molybdopterin binding domain AK39_3580 PF17770 Ribonuclease J C-terminal domain AK39_3580 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AK39_3580 PF00753 Metallo-beta-lactamase superfamily AK39_3581 PF00999 Sodium/hydrogen exchanger family AK39_3583 PF00202 Aminotransferase class-III AK39_3584 PF00474 Sodium:solute symporter family AK39_3585 PF04341 Protein of unknown function, DUF485 AK39_3588 PF01810 LysE type translocator AK39_359 PF12804 MobA-like NTP transferase domain AK39_3590 PF00313 'Cold-shock' DNA-binding domain AK39_3595 PF01263 Aldose 1-epimerase AK39_3596 PF13456 Reverse transcriptase-like AK39_36 PF01032 FecCD transport family AK39_360 PF13439 Glycosyltransferase Family 4 AK39_360 PF00534 Glycosyl transferases group 1 AK39_3600 PF13673 Acetyltransferase (GNAT) domain AK39_3600 PF18014 Acetyltransferase (GNAT) domain AK39_3606 PF00535 Glycosyl transferase family 2 AK39_3609 PF02397 Bacterial sugar transferase AK39_361 PF01569 PAP2 superfamily AK39_3615 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK39_3615 PF01367 5'-3' exonuclease, C-terminal SAM fold AK39_3616 PF00690 Cation transporter/ATPase, N-terminus AK39_3616 PF00689 Cation transporting ATPase, C-terminus AK39_3618 PF03738 Glutathionylspermidine synthase preATP-grasp AK39_362 PF00132 Bacterial transferase hexapeptide (six repeats) AK39_3621 PF00581 Rhodanese-like domain AK39_3622 PF10752 Protein of unknown function (DUF2533) AK39_3623 PF00583 Acetyltransferase (GNAT) family AK39_3625 PF00350 Dynamin family AK39_3627 PF04235 Protein of unknown function (DUF418) AK39_3628 PF00860 Permease family AK39_3629 PF00156 Phosphoribosyl transferase domain AK39_363 PF12146 Serine aminopeptidase, S33 AK39_3630 PF00557 Metallopeptidase family M24 AK39_3631 PF01636 Phosphotransferase enzyme family AK39_3633 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AK39_3634 PF13307 Helicase C-terminal domain AK39_3636 PF02926 THUMP domain AK39_3636 PF01170 Putative RNA methylase family UPF0020 AK39_3637 PF05103 DivIVA protein AK39_3638 PF06908 YspA SLOG family AK39_364 PF10776 Protein of unknown function (DUF2600) AK39_3645 PF10720 Protein of unknown function (DUF2515) AK39_3646 PF03838 Recombination protein U AK39_3647 PF00905 Penicillin binding protein transpeptidase domain AK39_3647 PF00912 Transglycosylase AK39_3649 PF00730 HhH-GPD superfamily base excision DNA repair protein AK39_3649 PF00633 Helix-hairpin-helix motif AK39_3649 PF10576 Iron-sulfur binding domain of endonuclease III AK39_3650 PF07261 Replication initiation and membrane attachment AK39_3651 PF00155 Aminotransferase class I and II AK39_3653 PF14084 Protein of unknown function (DUF4264) AK39_3654 PF13307 Helicase C-terminal domain AK39_3654 PF00929 Exonuclease AK39_3654 PF04851 Type III restriction enzyme, res subunit AK39_3655 PF02261 Aspartate decarboxylase AK39_3656 PF02569 Pantoate-beta-alanine ligase AK39_3657 PF02548 Ketopantoate hydroxymethyltransferase AK39_3659 PF08279 HTH domain AK39_3659 PF03099 Biotin/lipoate A/B protein ligase family AK39_3659 PF02237 Biotin protein ligase C terminal domain AK39_3660 PF01743 Poly A polymerase head domain AK39_3660 PF13735 tRNA nucleotidyltransferase domain 2 putative AK39_3660 PF12627 Probable RNA and SrmB- binding site of polymerase A AK39_3661 PF13439 Glycosyltransferase Family 4 AK39_3661 PF00534 Glycosyl transferases group 1 AK39_3662 PF02585 GlcNAc-PI de-N-acetylase AK39_3663 PF02142 MGS-like domain AK39_3664 PF01113 Dihydrodipicolinate reductase, N-terminus AK39_3664 PF05173 Dihydrodipicolinate reductase, C-terminus AK39_3665 PF03819 MazG nucleotide pyrophosphohydrolase domain AK39_3666 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_3666 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_3668 PF04298 Putative neutral zinc metallopeptidase AK39_3669 PF09577 Sporulation protein YpjB (SpoYpjB) AK39_367 PF01177 Asp/Glu/Hydantoin racemase AK39_3671 PF07187 Protein of unknown function (DUF1405) AK39_3672 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AK39_3672 PF00032 Cytochrome b(C-terminal)/b6/petD AK39_3673 PF00033 Cytochrome b/b6/petB AK39_3674 PF00355 Rieske [2Fe-2S] domain AK39_3675 PF10673 Protein of unknown function (DUF2487) AK39_3676 PF08858 IDEAL domain AK39_3676 PF08864 UPF0302 domain AK39_3678 PF00155 Aminotransferase class I and II AK39_3679 PF01761 3-dehydroquinate synthase AK39_3680 PF01264 Chorismate synthase AK39_3681 PF00334 Nucleoside diphosphate kinase AK39_3682 PF00348 Polyprenyl synthetase AK39_3683 PF01209 ubiE/COQ5 methyltransferase family AK39_3684 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AK39_3685 PF01227 GTP cyclohydrolase I AK39_3686 PF00216 Bacterial DNA-binding protein AK39_3687 PF09547 Stage IV sporulation protein A (spore_IV_A) AK39_3689 PF10966 Protein of unknown function (DUF2768) AK39_369 PF00005 ABC transporter AK39_369 PF13732 Domain of unknown function (DUF4162) AK39_3691 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AK39_3691 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AK39_3692 PF01926 50S ribosome-binding GTPase AK39_3692 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AK39_3694 PF14045 YIEGIA protein AK39_3696 PF14140 YpzI-like protein AK39_3697 PF01070 FMN-dependent dehydrogenase AK39_3698 PF00575 S1 RNA binding domain AK39_3699 PF02224 Cytidylate kinase AK39_37 PF01032 FecCD transport family AK39_370 PF06962 Putative rRNA methylase AK39_3701 PF17763 Glutaminase/Asparaginase C-terminal domain AK39_3701 PF00710 Asparaginase, N-terminal AK39_3706 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AK39_3706 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK39_3707 PF05389 Negative regulator of genetic competence (MecA) AK39_3708 PF13411 MerR HTH family regulatory protein AK39_3708 PF02310 B12 binding domain AK39_3708 PF02607 B12 binding domain AK39_3709 PF00149 Calcineurin-like phosphoesterase AK39_371 PF16199 Radical_SAM C-terminal domain AK39_371 PF04055 Radical SAM superfamily AK39_3711 PF02517 CPBP intramembrane metalloprotease AK39_3712 PF00271 Helicase conserved C-terminal domain AK39_3712 PF00270 DEAD/DEAH box helicase AK39_3713 PF14493 Helix-turn-helix domain AK39_3715 PF12822 ECF transporter, substrate-specific component AK39_3718 PF01923 Cobalamin adenosyltransferase AK39_3719 PF00989 PAS fold AK39_3719 PF00512 His Kinase A (phospho-acceptor) domain AK39_3719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3719 PF18698 Histidine kinase sensor domain AK39_3719 PF00672 HAMP domain AK39_372 PF10732 Protein of unknown function (DUF2524) AK39_3720 PF00486 Transcriptional regulatory protein, C terminal AK39_3720 PF00072 Response regulator receiver domain AK39_3721 PF01578 Cytochrome C assembly protein AK39_3722 PF05140 ResB-like family AK39_3723 PF00578 AhpC/TSA family AK39_3724 PF01479 S4 domain AK39_3724 PF00849 RNA pseudouridylate synthase AK39_3725 PF07670 Nucleoside recognition AK39_3726 PF07670 Nucleoside recognition AK39_3727 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_3727 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_3728 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK39_3728 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK39_3731 PF09924 Uncharacterised conserved protein (DUF2156) AK39_3731 PF03706 Lysylphosphatidylglycerol synthase TM region AK39_3734 PF01048 Phosphorylase superfamily AK39_3735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3735 PF00512 His Kinase A (phospho-acceptor) domain AK39_3735 PF00989 PAS fold AK39_3735 PF16736 Single Cache-like AK39_3736 PF00589 Phage integrase family AK39_3738 PF01904 Protein of unknown function DUF72 AK39_3739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3739 PF00989 PAS fold AK39_3739 PF00512 His Kinase A (phospho-acceptor) domain AK39_374 PF07786 Protein of unknown function (DUF1624) AK39_374 PF04235 Protein of unknown function (DUF418) AK39_3742 PF00912 Transglycosylase AK39_3742 PF00905 Penicillin binding protein transpeptidase domain AK39_3743 PF01865 Protein of unknown function DUF47 AK39_3744 PF01384 Phosphate transporter family AK39_3745 PF01925 Sulfite exporter TauE/SafE AK39_3748 PF00042 Globin AK39_3748 PF00970 Oxidoreductase FAD-binding domain AK39_3748 PF00175 Oxidoreductase NAD-binding domain AK39_375 PF00005 ABC transporter AK39_3753 PF08241 Methyltransferase domain AK39_3755 PF05525 Branched-chain amino acid transport protein AK39_3757 PF00196 Bacterial regulatory proteins, luxR family AK39_3757 PF00072 Response regulator receiver domain AK39_3758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3758 PF07730 Histidine kinase AK39_3758 PF00672 HAMP domain AK39_3759 PF09922 Cell wall-active antibiotics response 4TMS YvqF AK39_3762 PF03553 Na+/H+ antiporter family AK39_3764 PF00375 Sodium:dicarboxylate symporter family AK39_3766 PF00209 Sodium:neurotransmitter symporter family AK39_3768 PF01903 CbiX AK39_3769 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK39_377 PF00589 Phage integrase family AK39_3771 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AK39_3771 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AK39_3773 PF14306 PUA-like domain AK39_3773 PF01747 ATP-sulfurylase AK39_3774 PF01507 Phosphoadenosine phosphosulfate reductase family AK39_3776 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AK39_3776 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AK39_3778 PF00884 Sulfatase AK39_3779 PF01066 CDP-alcohol phosphatidyltransferase AK39_378 PF02080 TrkA-C domain AK39_3780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK39_3780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK39_3782 PF02811 PHP domain AK39_3783 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AK39_3784 PF01502 Phosphoribosyl-AMP cyclohydrolase AK39_3785 PF00977 Histidine biosynthesis protein AK39_3786 PF00977 Histidine biosynthesis protein AK39_3787 PF00117 Glutamine amidotransferase class-I AK39_3788 PF00475 Imidazoleglycerol-phosphate dehydratase AK39_3789 PF00815 Histidinol dehydrogenase AK39_379 PF00999 Sodium/hydrogen exchanger family AK39_3790 PF01634 ATP phosphoribosyltransferase AK39_3791 PF13393 Histidyl-tRNA synthetase AK39_3792 PF00694 Aconitase C-terminal domain AK39_3793 PF00330 Aconitase family (aconitate hydratase) AK39_3794 PF00180 Isocitrate/isopropylmalate dehydrogenase AK39_3795 PF00682 HMGL-like AK39_3795 PF08502 LeuA allosteric (dimerisation) domain AK39_3796 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AK39_3796 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AK39_3797 PF10369 Small subunit of acetolactate synthase AK39_3797 PF01842 ACT domain AK39_3798 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK39_3798 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK39_3798 PF00205 Thiamine pyrophosphate enzyme, central domain AK39_3799 PF01063 Amino-transferase class IV AK39_38 PF00005 ABC transporter AK39_380 PF07690 Major Facilitator Superfamily AK39_3802 PF03698 Uncharacterised protein family (UPF0180) AK39_3804 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AK39_3806 PF02386 Cation transport protein AK39_3807 PF00375 Sodium:dicarboxylate symporter family AK39_3809 PF01047 MarR family AK39_381 PF08264 Anticodon-binding domain of tRNA AK39_381 PF09334 tRNA synthetases class I (M) AK39_381 PF13603 Leucyl-tRNA synthetase, Domain 2 AK39_381 PF00133 tRNA synthetases class I (I, L, M and V) AK39_3812 PF02673 Bacitracin resistance protein BacA AK39_3813 PF01554 MatE AK39_3817 PF01636 Phosphotransferase enzyme family AK39_3820 PF00258 Flavodoxin AK39_3822 PF07687 Peptidase dimerisation domain AK39_3822 PF01546 Peptidase family M20/M25/M40 AK39_3824 PF13193 AMP-binding enzyme C-terminal domain AK39_3824 PF00501 AMP-binding enzyme AK39_3825 PF03062 MBOAT, membrane-bound O-acyltransferase family AK39_3826 PF00550 Phosphopantetheine attachment site AK39_3827 PF04914 DltD protein AK39_3828 PF03060 Nitronate monooxygenase AK39_3829 PF17676 LD-carboxypeptidase C-terminal domain AK39_3829 PF02016 LD-carboxypeptidase N-terminal domain AK39_3831 PF00857 Isochorismatase family AK39_3833 PF01037 Lrp/AsnC ligand binding domain AK39_3837 PF00005 ABC transporter AK39_3839 PF00005 ABC transporter AK39_3840 PF00392 Bacterial regulatory proteins, gntR family AK39_3841 PF00268 Ribonucleotide reductase, small chain AK39_3842 PF08343 Ribonucleotide reductase N-terminal AK39_3842 PF02867 Ribonucleotide reductase, barrel domain AK39_3842 PF00317 Ribonucleotide reductase, all-alpha domain AK39_3844 PF02867 Ribonucleotide reductase, barrel domain AK39_3844 PF08343 Ribonucleotide reductase N-terminal AK39_3844 PF00317 Ribonucleotide reductase, all-alpha domain AK39_3845 PF07972 NrdI Flavodoxin like AK39_3852 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AK39_3853 PF14489 QueF-like protein AK39_3854 PF04055 Radical SAM superfamily AK39_3855 PF01242 6-pyruvoyl tetrahydropterin synthase AK39_3856 PF06508 Queuosine biosynthesis protein QueC AK39_3857 PF13426 PAS domain AK39_3857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3857 PF00512 His Kinase A (phospho-acceptor) domain AK39_3857 PF13188 PAS domain AK39_3857 PF00989 PAS fold AK39_3859 PF12867 DinB superfamily AK39_386 PF03845 Spore germination protein AK39_3861 PF01047 MarR family AK39_3862 PF02743 Cache domain AK39_3862 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3862 PF00512 His Kinase A (phospho-acceptor) domain AK39_3863 PF09388 Spo0E like sporulation regulatory protein AK39_3864 PF04748 Divergent polysaccharide deacetylase AK39_3866 PF00596 Class II Aldolase and Adducin N-terminal domain AK39_3867 PF00596 Class II Aldolase and Adducin N-terminal domain AK39_3868 PF00395 S-layer homology domain AK39_3868 PF01520 N-acetylmuramoyl-L-alanine amidase AK39_387 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_3872 PF00455 DeoR C terminal sensor domain AK39_3872 PF08220 DeoR-like helix-turn-helix domain AK39_3874 PF00266 Aminotransferase class-V AK39_3875 PF13419 Haloacid dehalogenase-like hydrolase AK39_3876 PF00528 Binding-protein-dependent transport system inner membrane component AK39_3878 PF00005 ABC transporter AK39_3879 PF00005 ABC transporter AK39_3879 PF08402 TOBE domain AK39_388 PF00561 alpha/beta hydrolase fold AK39_3884 PF02386 Cation transport protein AK39_3886 PF00561 alpha/beta hydrolase fold AK39_3891 PF01575 MaoC like domain AK39_3892 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK39_3893 PF02386 Cation transport protein AK39_3894 PF03741 Integral membrane protein TerC family AK39_3895 PF01226 Formate/nitrite transporter AK39_3897 PF01478 Type IV leader peptidase family AK39_3897 PF06750 Bacterial Peptidase A24 N-terminal domain AK39_3898 PF02589 LUD domain AK39_3899 PF02589 LUD domain AK39_3899 PF11870 Domain of unknown function (DUF3390) AK39_3899 PF13183 4Fe-4S dicluster domain AK39_390 PF00581 Rhodanese-like domain AK39_3900 PF02754 Cysteine-rich domain AK39_3901 PF07729 FCD domain AK39_3901 PF00392 Bacterial regulatory proteins, gntR family AK39_3902 PF00672 HAMP domain AK39_3902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_3902 PF18698 Histidine kinase sensor domain AK39_3902 PF00989 PAS fold AK39_3902 PF00512 His Kinase A (phospho-acceptor) domain AK39_3903 PF00486 Transcriptional regulatory protein, C terminal AK39_3903 PF00072 Response regulator receiver domain AK39_3905 PF17853 GGDEF-like domain AK39_3905 PF13556 PucR C-terminal helix-turn-helix domain AK39_3905 PF05651 Putative sugar diacid recognition AK39_3906 PF02913 FAD linked oxidases, C-terminal domain AK39_3906 PF01565 FAD binding domain AK39_3907 PF13183 4Fe-4S dicluster domain AK39_3907 PF02754 Cysteine-rich domain AK39_3908 PF00188 Cysteine-rich secretory protein family AK39_3910 PF01479 S4 domain AK39_3910 PF00849 RNA pseudouridylate synthase AK39_3912 PF03176 MMPL family AK39_3914 PF13416 Bacterial extracellular solute-binding protein AK39_3915 PF00528 Binding-protein-dependent transport system inner membrane component AK39_3916 PF00528 Binding-protein-dependent transport system inner membrane component AK39_3917 PF08402 TOBE domain AK39_3917 PF00005 ABC transporter AK39_3918 PF00171 Aldehyde dehydrogenase family AK39_3919 PF05547 Immune inhibitor A peptidase M6 AK39_3920 PF01381 Helix-turn-helix AK39_3920 PF08671 Anti-repressor SinI AK39_3921 PF12389 Camelysin metallo-endopeptidase AK39_3923 PF12389 Camelysin metallo-endopeptidase AK39_3925 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_3925 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_3927 PF13649 Methyltransferase domain AK39_3938 PF01381 Helix-turn-helix AK39_3939 PF16870 2-oxoglutarate dehydrogenase C-terminal AK39_3939 PF00676 Dehydrogenase E1 component AK39_3939 PF02779 Transketolase, pyrimidine binding domain AK39_394 PF06463 Molybdenum Cofactor Synthesis C AK39_394 PF04055 Radical SAM superfamily AK39_3940 PF02817 e3 binding domain AK39_3940 PF00364 Biotin-requiring enzyme AK39_3940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK39_3946 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK39_3946 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_395 PF00899 ThiF family AK39_3950 PF10042 Uncharacterized conserved protein (DUF2278) AK39_3951 PF02652 L-lactate permease AK39_3953 PF00290 Tryptophan synthase alpha chain AK39_3954 PF00291 Pyridoxal-phosphate dependent enzyme AK39_3955 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AK39_3956 PF00218 Indole-3-glycerol phosphate synthase AK39_3957 PF00591 Glycosyl transferase family, a/b domain AK39_3957 PF02885 Glycosyl transferase family, helical bundle domain AK39_3958 PF02885 Glycosyl transferase family, helical bundle domain AK39_3958 PF00117 Glutamine amidotransferase class-I AK39_3958 PF00591 Glycosyl transferase family, a/b domain AK39_396 PF01967 MoaC family AK39_3960 PF00474 Sodium:solute symporter family AK39_3961 PF02368 Bacterial Ig-like domain (group 2) AK39_3964 PF00756 Putative esterase AK39_3966 PF13673 Acetyltransferase (GNAT) domain AK39_3967 PF00580 UvrD/REP helicase N-terminal domain AK39_3967 PF13361 UvrD-like helicase C-terminal domain AK39_397 PF00994 Probable molybdopterin binding domain AK39_397 PF03454 MoeA C-terminal region (domain IV) AK39_397 PF03453 MoeA N-terminal region (domain I and II) AK39_3970 PF07098 Protein of unknown function (DUF1360) AK39_3974 PF04321 RmlD substrate binding domain AK39_3975 PF16363 GDP-mannose 4,6 dehydratase AK39_3976 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AK39_3977 PF00483 Nucleotidyl transferase AK39_398 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AK39_3981 PF13181 Tetratricopeptide repeat AK39_3981 PF00535 Glycosyl transferase family 2 AK39_3983 PF05711 Macrocin-O-methyltransferase (TylF) AK39_3984 PF08241 Methyltransferase domain AK39_3985 PF00535 Glycosyl transferase family 2 AK39_3986 PF01098 Cell cycle protein AK39_3987 PF01098 Cell cycle protein AK39_3988 PF00149 Calcineurin-like phosphoesterase AK39_399 PF02391 MoaE protein AK39_3991 PF00849 RNA pseudouridylate synthase AK39_3992 PF01513 ATP-NAD kinase AK39_3993 PF04607 Region found in RelA / SpoT proteins AK39_3995 PF01928 CYTH domain AK39_3996 PF01152 Bacterial-like globin AK39_3999 PF08439 Oligopeptidase F AK39_3999 PF01432 Peptidase family M3 AK39_4 PF00113 Enolase, C-terminal TIM barrel domain AK39_4 PF03952 Enolase, N-terminal domain AK39_4001 PF13396 Phospholipase_D-nuclease N-terminal AK39_4001 PF13091 PLD-like domain AK39_4002 PF05389 Negative regulator of genetic competence (MecA) AK39_4003 PF03741 Integral membrane protein TerC family AK39_4004 PF03960 ArsC family AK39_4006 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_4007 PF01554 MatE AK39_4008 PF00005 ABC transporter AK39_4008 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4009 PF00005 ABC transporter AK39_4009 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4010 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4010 PF12911 N-terminal TM domain of oligopeptide transport permease C AK39_4011 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4012 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_4014 PF00579 tRNA synthetases class I (W and Y) AK39_4015 PF12227 Protein of unknown function (DUF3603) AK39_4016 PF10026 Predicted Zn-dependent protease (DUF2268) AK39_4017 PF02801 Beta-ketoacyl synthase, C-terminal domain AK39_4017 PF00109 Beta-ketoacyl synthase, N-terminal domain AK39_4018 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK39_4018 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK39_4019 PF10815 ComZ AK39_402 PF06800 Sugar transport protein AK39_4023 PF10431 C-terminal, D2-small domain, of ClpB protein AK39_4023 PF17871 AAA lid domain AK39_4023 PF02861 Clp amino terminal domain, pathogenicity island component AK39_4023 PF00004 ATPase family associated with various cellular activities (AAA) AK39_4023 PF07724 AAA domain (Cdc48 subfamily) AK39_4024 PF14168 YjzC-like protein AK39_4027 PF12758 Protein of unknown function (DUF3813) AK39_4028 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_4028 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_4030 PF00639 PPIC-type PPIASE domain AK39_4032 PF13509 S1 domain AK39_4032 PF17783 CvfB-like winged helix domain AK39_4033 PF04461 Protein of unknown function (DUF520) AK39_4035 PF00128 Alpha amylase, catalytic domain AK39_4036 PF00909 Ammonium Transporter Family AK39_4037 PF00199 Catalase AK39_4037 PF06628 Catalase-related immune-responsive AK39_4039 PF13537 Glutamine amidotransferase domain AK39_4039 PF00733 Asparagine synthase AK39_404 PF02559 CarD-like/TRCF domain AK39_4041 PF07457 Protein of unknown function (DUF1516) AK39_4042 PF00202 Aminotransferase class-III AK39_4044 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK39_4045 PF10676 Spore germination protein gerPA/gerPF AK39_4046 PF10803 Spore germination GerPB AK39_4047 PF10737 Spore germination protein GerPC AK39_4049 PF10970 Spore germination protein GerPE AK39_4050 PF10676 Spore germination protein gerPA/gerPF AK39_4052 PF13361 UvrD-like helicase C-terminal domain AK39_4052 PF00580 UvrD/REP helicase N-terminal domain AK39_4052 PF12705 PD-(D/E)XK nuclease superfamily AK39_4053 PF12705 PD-(D/E)XK nuclease superfamily AK39_4053 PF13361 UvrD-like helicase C-terminal domain AK39_4054 PF10502 Signal peptidase, peptidase S26 AK39_4055 PF09335 SNARE associated Golgi protein AK39_4056 PF06338 ComK protein AK39_4059 PF00313 'Cold-shock' DNA-binding domain AK39_406 PF10957 Sporulation protein Cse60 AK39_4061 PF00463 Isocitrate lyase family AK39_4062 PF01274 Malate synthase AK39_4063 PF00395 S-layer homology domain AK39_4065 PF00395 S-layer homology domain AK39_4065 PF00150 Cellulase (glycosyl hydrolase family 5) AK39_4065 PF03424 Carbohydrate binding domain (family 17/28) AK39_4066 PF00892 EamA-like transporter family AK39_4067 PF02743 Cache domain AK39_4067 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_4067 PF00672 HAMP domain AK39_4068 PF16491 CAAX prenyl protease N-terminal, five membrane helices AK39_4068 PF01435 Peptidase family M48 AK39_4073 PF00486 Transcriptional regulatory protein, C terminal AK39_4073 PF00072 Response regulator receiver domain AK39_4074 PF00512 His Kinase A (phospho-acceptor) domain AK39_4074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4077 PF12833 Helix-turn-helix domain AK39_4077 PF06445 GyrI-like small molecule binding domain AK39_4078 PF08281 Sigma-70, region 4 AK39_4078 PF04542 Sigma-70 region 2 AK39_408 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AK39_4080 PF01966 HD domain AK39_4081 PF00149 Calcineurin-like phosphoesterase AK39_4083 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AK39_4088 PF05593 RHS Repeat AK39_409 PF01022 Bacterial regulatory protein, arsR family AK39_4091 PF05593 RHS Repeat AK39_4092 PF00395 S-layer homology domain AK39_4092 PF01520 N-acetylmuramoyl-L-alanine amidase AK39_4094 PF00501 AMP-binding enzyme AK39_4094 PF13193 AMP-binding enzyme C-terminal domain AK39_4096 PF10437 Bacterial lipoate protein ligase C-terminus AK39_4096 PF03099 Biotin/lipoate A/B protein ligase family AK39_4097 PF12706 Beta-lactamase superfamily domain AK39_4098 PF14149 YhfH-like protein AK39_4099 PF00356 Bacterial regulatory proteins, lacI family AK39_41 PF06146 Phosphate-starvation-inducible E AK39_410 PF07690 Major Facilitator Superfamily AK39_4105 PF00440 Bacterial regulatory proteins, tetR family AK39_4105 PF17932 Tetracyclin repressor-like, C-terminal domain AK39_4107 PF03965 Penicillinase repressor AK39_4114 PF01208 Uroporphyrinogen decarboxylase (URO-D) AK39_4115 PF00912 Transglycosylase AK39_4115 PF00905 Penicillin binding protein transpeptidase domain AK39_4116 PF03992 Antibiotic biosynthesis monooxygenase AK39_4117 PF03703 Bacterial PH domain AK39_4118 PF03703 Bacterial PH domain AK39_412 PF14667 Polysaccharide biosynthesis C-terminal domain AK39_412 PF01943 Polysaccharide biosynthesis protein AK39_4127 PF03703 Bacterial PH domain AK39_4129 PF03703 Bacterial PH domain AK39_413 PF00849 RNA pseudouridylate synthase AK39_413 PF01479 S4 domain AK39_4131 PF00440 Bacterial regulatory proteins, tetR family AK39_4131 PF17934 Tetracyclin repressor-like, C-terminal domain AK39_4133 PF12787 EcsC protein family AK39_4134 PF05975 Bacterial ABC transporter protein EcsB AK39_4135 PF00005 ABC transporter AK39_4136 PF01230 HIT domain AK39_4137 PF12732 YtxH-like protein AK39_4138 PF01047 MarR family AK39_414 PF08220 DeoR-like helix-turn-helix domain AK39_4142 PF13538 UvrD-like helicase C-terminal domain AK39_4144 PF07690 Major Facilitator Superfamily AK39_4145 PF07690 Major Facilitator Superfamily AK39_415 PF01546 Peptidase family M20/M25/M40 AK39_4150 PF04542 Sigma-70 region 2 AK39_4150 PF08281 Sigma-70, region 4 AK39_4153 PF01266 FAD dependent oxidoreductase AK39_4153 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AK39_4154 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_4154 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_4155 PF00230 Major intrinsic protein AK39_4156 PF04309 Glycerol-3-phosphate responsive antiterminator AK39_416 PF01546 Peptidase family M20/M25/M40 AK39_4160 PF00561 alpha/beta hydrolase fold AK39_4160 PF08386 TAP-like protein AK39_4162 PF18801 response regulator aspartate phosphatase H, N terminal AK39_4163 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_4164 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_4165 PF07690 Major Facilitator Superfamily AK39_4166 PF00440 Bacterial regulatory proteins, tetR family AK39_4167 PF01966 HD domain AK39_4167 PF01336 OB-fold nucleic acid binding domain AK39_4169 PF07282 Putative transposase DNA-binding domain AK39_4169 PF01385 Probable transposase AK39_4169 PF12323 Helix-turn-helix domain AK39_417 PF02834 LigT like Phosphoesterase AK39_4170 PF13514 AAA domain AK39_4171 PF00149 Calcineurin-like phosphoesterase AK39_4174 PF11121 Protein of unknown function (DUF2639) AK39_4175 PF00107 Zinc-binding dehydrogenase AK39_4175 PF08240 Alcohol dehydrogenase GroES-like domain AK39_4177 PF01906 Putative heavy-metal-binding AK39_418 PF17999 Pullulanase N1-terminal domain AK39_418 PF00128 Alpha amylase, catalytic domain AK39_418 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AK39_4182 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK39_4182 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4182 PF00072 Response regulator receiver domain AK39_4182 PF01627 Hpt domain AK39_4182 PF00512 His Kinase A (phospho-acceptor) domain AK39_4183 PF01739 CheR methyltransferase, SAM binding domain AK39_4183 PF03705 CheR methyltransferase, all-alpha domain AK39_4184 PF07228 Stage II sporulation protein E (SpoIIE) AK39_4184 PF13426 PAS domain AK39_4186 PF04542 Sigma-70 region 2 AK39_4186 PF04539 Sigma-70 region 3 AK39_4186 PF04545 Sigma-70, region 4 AK39_4187 PF13581 Histidine kinase-like ATPase domain AK39_4188 PF01740 STAS domain AK39_419 PF01636 Phosphotransferase enzyme family AK39_4191 PF05532 CsbD-like AK39_4192 PF11181 Heat induced stress protein YflT AK39_4196 PF00395 S-layer homology domain AK39_42 PF13302 Acetyltransferase (GNAT) domain AK39_420 PF14165 YtzH-like protein AK39_4201 PF00672 HAMP domain AK39_4201 PF01966 HD domain AK39_4206 PF02082 Transcriptional regulator AK39_4207 PF02525 Flavodoxin-like fold AK39_4208 PF02733 Dak1 domain AK39_421 PF02390 Putative methyltransferase AK39_4210 PF02733 Dak1 domain AK39_4214 PF01066 CDP-alcohol phosphatidyltransferase AK39_4218 PF00440 Bacterial regulatory proteins, tetR family AK39_4218 PF18665 Tetracyclin repressor-like, C-terminal domain AK39_4219 PF00550 Phosphopantetheine attachment site AK39_4219 PF07993 Male sterility protein AK39_422 PF00753 Metallo-beta-lactamase superfamily AK39_4229 PF07690 Major Facilitator Superfamily AK39_4232 PF01925 Sulfite exporter TauE/SafE AK39_4237 PF00772 DnaB-like helicase N terminal domain AK39_4237 PF03796 DnaB-like helicase C terminal domain AK39_424 PF05343 M42 glutamyl aminopeptidase AK39_4240 PF13411 MerR HTH family regulatory protein AK39_4240 PF06445 GyrI-like small molecule binding domain AK39_4244 PF02342 TerD domain AK39_4245 PF03401 Tripartite tricarboxylate transporter family receptor AK39_4246 PF00072 Response regulator receiver domain AK39_4246 PF12431 Transcriptional regulator AK39_4246 PF08279 HTH domain AK39_4247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4247 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK39_4248 PF00083 Sugar (and other) transporter AK39_425 PF01931 Protein of unknown function DUF84 AK39_4254 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4254 PF00005 ABC transporter AK39_4255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4255 PF00005 ABC transporter AK39_4256 PF00005 ABC transporter AK39_4256 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4257 PF12911 N-terminal TM domain of oligopeptide transport permease C AK39_4257 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4258 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4259 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_426 PF00085 Thioredoxin AK39_4263 PF18593 CdiI immunity protein AK39_4264 PF02423 Ornithine cyclodeaminase/mu-crystallin family AK39_4265 PF05544 Proline racemase AK39_4266 PF11121 Protein of unknown function (DUF2639) AK39_4269 PF01520 N-acetylmuramoyl-L-alanine amidase AK39_4269 PF00395 S-layer homology domain AK39_427 PF07285 Protein of unknown function (DUF1444) AK39_4270 PF05343 M42 glutamyl aminopeptidase AK39_4273 PF00378 Enoyl-CoA hydratase/isomerase AK39_4276 PF03062 MBOAT, membrane-bound O-acyltransferase family AK39_4277 PF03062 MBOAT, membrane-bound O-acyltransferase family AK39_4279 PF00395 S-layer homology domain AK39_428 PF01588 Putative tRNA binding domain AK39_428 PF14794 Domain of unknown function (DUF4479) AK39_4280 PF02368 Bacterial Ig-like domain (group 2) AK39_4280 PF13205 Bacterial Ig-like domain AK39_4280 PF00395 S-layer homology domain AK39_4282 PF14667 Polysaccharide biosynthesis C-terminal domain AK39_4282 PF01943 Polysaccharide biosynthesis protein AK39_4283 PF01043 SecA preprotein cross-linking domain AK39_4283 PF07517 SecA DEAD-like domain AK39_4283 PF07516 SecA Wing and Scaffold domain AK39_4287 PF01740 STAS domain AK39_4287 PF00916 Sulfate permease family AK39_4289 PF13193 AMP-binding enzyme C-terminal domain AK39_4289 PF00501 AMP-binding enzyme AK39_4290 PF04055 Radical SAM superfamily AK39_4292 PF01510 N-acetylmuramoyl-L-alanine amidase AK39_4292 PF01476 LysM domain AK39_4292 PF01471 Putative peptidoglycan binding domain AK39_4295 PF02245 Methylpurine-DNA glycosylase (MPG) AK39_4297 PF03306 Alpha-acetolactate decarboxylase AK39_4298 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK39_4298 PF00205 Thiamine pyrophosphate enzyme, central domain AK39_4298 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK39_430 PF17854 FtsK alpha domain AK39_430 PF09397 Ftsk gamma domain AK39_430 PF01580 FtsK/SpoIIIE family AK39_4301 PF06133 Control of competence regulator ComK, YlbF/YmcA AK39_4302 PF04286 Protein of unknown function (DUF445) AK39_4304 PF14398 YheC/D like ATP-grasp AK39_4306 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK39_4307 PF00005 ABC transporter AK39_4308 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4309 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK39_4310 PF00664 ABC transporter transmembrane region AK39_4310 PF00005 ABC transporter AK39_4311 PF00664 ABC transporter transmembrane region AK39_4311 PF00005 ABC transporter AK39_4312 PF00005 ABC transporter AK39_4312 PF00664 ABC transporter transmembrane region AK39_4313 PF00171 Aldehyde dehydrogenase family AK39_4315 PF01177 Asp/Glu/Hydantoin racemase AK39_4316 PF13520 Amino acid permease AK39_4318 PF18011 C-terminal domain found in long catalases AK39_4318 PF06628 Catalase-related immune-responsive AK39_4318 PF00199 Catalase AK39_4319 PF01965 DJ-1/PfpI family AK39_432 PF08245 Mur ligase middle domain AK39_432 PF02875 Mur ligase family, glutamate ligase domain AK39_432 PF01225 Mur ligase family, catalytic domain AK39_4321 PF07690 Major Facilitator Superfamily AK39_4322 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_4322 PF12793 Sugar transport-related sRNA regulator N-term AK39_4323 PF02525 Flavodoxin-like fold AK39_4325 PF01638 HxlR-like helix-turn-helix AK39_4326 PF07690 Major Facilitator Superfamily AK39_4327 PF00440 Bacterial regulatory proteins, tetR family AK39_4327 PF17934 Tetracyclin repressor-like, C-terminal domain AK39_4328 PF00893 Small Multidrug Resistance protein AK39_4329 PF00893 Small Multidrug Resistance protein AK39_433 PF13302 Acetyltransferase (GNAT) domain AK39_4331 PF01037 Lrp/AsnC ligand binding domain AK39_4332 PF00892 EamA-like transporter family AK39_4335 PF07681 DoxX AK39_4337 PF02378 Phosphotransferase system, EIIC AK39_4337 PF00367 phosphotransferase system, EIIB AK39_4338 PF01380 SIS domain AK39_4339 PF01418 Helix-turn-helix domain, rpiR family AK39_4339 PF01380 SIS domain AK39_4341 PF00999 Sodium/hydrogen exchanger family AK39_4342 PF13520 Amino acid permease AK39_4348 PF09335 SNARE associated Golgi protein AK39_4350 PF02735 Ku70/Ku80 beta-barrel domain AK39_4353 PF11007 Spore coat associated protein JA (CotJA) AK39_4354 PF12652 CotJB protein AK39_4355 PF05067 Manganese containing catalase AK39_4356 PF05525 Branched-chain amino acid transport protein AK39_4359 PF09529 Integral membrane protein (intg_mem_TP0381) AK39_4361 PF00005 ABC transporter AK39_4362 PF02687 FtsX-like permease family AK39_4362 PF12704 MacB-like periplasmic core domain AK39_4363 PF01476 LysM domain AK39_4363 PF06725 3D domain AK39_4366 PF02378 Phosphotransferase system, EIIC AK39_4367 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK39_4368 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AK39_4369 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK39_4369 PF05043 Mga helix-turn-helix domain AK39_4369 PF00874 PRD domain AK39_4369 PF08279 HTH domain AK39_437 PF02073 Thermophilic metalloprotease (M29) AK39_4371 PF07690 Major Facilitator Superfamily AK39_4372 PF02690 Na+/Pi-cotransporter AK39_4373 PF08240 Alcohol dehydrogenase GroES-like domain AK39_4373 PF00107 Zinc-binding dehydrogenase AK39_4374 PF03816 Cell envelope-related transcriptional attenuator domain AK39_4376 PF01925 Sulfite exporter TauE/SafE AK39_4377 PF13686 DsrE/DsrF/DrsH-like family AK39_4379 PF00581 Rhodanese-like domain AK39_4381 PF01206 Sulfurtransferase TusA AK39_4382 PF00581 Rhodanese-like domain AK39_4382 PF00753 Metallo-beta-lactamase superfamily AK39_4383 PF00581 Rhodanese-like domain AK39_4383 PF01206 Sulfurtransferase TusA AK39_4384 PF02583 Metal-sensitive transcriptional repressor AK39_4385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK39_4385 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_439 PF11009 Protein of unknown function (DUF2847) AK39_4390 PF04293 SpoVR like protein AK39_4391 PF00881 Nitroreductase family AK39_4394 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_4396 PF03845 Spore germination protein AK39_4398 PF14148 YhdB-like protein AK39_4399 PF02600 Disulfide bond formation protein DsbB AK39_440 PF07537 CamS sex pheromone cAM373 precursor AK39_4400 PF00085 Thioredoxin AK39_4402 PF13407 Periplasmic binding protein domain AK39_4402 PF00356 Bacterial regulatory proteins, lacI family AK39_4403 PF02378 Phosphotransferase system, EIIC AK39_4403 PF00367 phosphotransferase system, EIIB AK39_4404 PF08244 Glycosyl hydrolases family 32 C terminal AK39_4404 PF00251 Glycosyl hydrolases family 32 N-terminal domain AK39_4405 PF00294 pfkB family carbohydrate kinase AK39_441 PF00356 Bacterial regulatory proteins, lacI family AK39_4410 PF00860 Permease family AK39_4413 PF01047 MarR family AK39_4414 PF07690 Major Facilitator Superfamily AK39_4415 PF02702 Osmosensitive K+ channel His kinase sensor domain AK39_4416 PF02669 K+-transporting ATPase, c chain AK39_4418 PF03814 Potassium-transporting ATPase A subunit AK39_4422 PF08543 Phosphomethylpyrimidine kinase AK39_4423 PF00899 ThiF family AK39_4424 PF05690 Thiazole biosynthesis protein ThiG AK39_4425 PF02597 ThiS family AK39_4426 PF01266 FAD dependent oxidoreductase AK39_4427 PF02581 Thiamine monophosphate synthase AK39_4428 PF09084 NMT1/THI5 like AK39_4429 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4430 PF00005 ABC transporter AK39_4431 PF03070 TENA/THI-4/PQQC family AK39_4432 PF08239 Bacterial SH3 domain AK39_4432 PF00246 Zinc carboxypeptidase AK39_4435 PF00571 CBS domain AK39_446 PF01741 Large-conductance mechanosensitive channel, MscL AK39_4460 PF00873 AcrB/AcrD/AcrF family AK39_4462 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4463 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4464 PF12849 PBP superfamily domain AK39_4465 PF02421 Ferrous iron transport protein B AK39_4465 PF07664 Ferrous iron transport protein B C terminus AK39_4465 PF17910 FeoB cytosolic helical domain AK39_4465 PF07670 Nucleoside recognition AK39_4465 PF04023 FeoA domain AK39_4466 PF17910 FeoB cytosolic helical domain AK39_4466 PF02421 Ferrous iron transport protein B AK39_4466 PF07670 Nucleoside recognition AK39_4466 PF07664 Ferrous iron transport protein B C terminus AK39_4467 PF07670 Nucleoside recognition AK39_4467 PF02421 Ferrous iron transport protein B AK39_4467 PF17910 FeoB cytosolic helical domain AK39_4467 PF07664 Ferrous iron transport protein B C terminus AK39_4468 PF05504 Spore germination B3/ GerAC like, C-terminal AK39_4469 PF03845 Spore germination protein AK39_447 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK39_4470 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_4471 PF00474 Sodium:solute symporter family AK39_4472 PF11755 Protein of unknown function (DUF3311) AK39_4473 PF01546 Peptidase family M20/M25/M40 AK39_4473 PF07687 Peptidase dimerisation domain AK39_4474 PF13529 Peptidase_C39 like family AK39_4475 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AK39_4476 PF00115 Cytochrome C and Quinol oxidase polypeptide I AK39_4477 PF00510 Cytochrome c oxidase subunit III AK39_4479 PF00999 Sodium/hydrogen exchanger family AK39_4479 PF02080 TrkA-C domain AK39_4479 PF02254 TrkA-N domain AK39_448 PF12796 Ankyrin repeats (3 copies) AK39_4484 PF00860 Permease family AK39_4485 PF00324 Amino acid permease AK39_4488 PF05525 Branched-chain amino acid transport protein AK39_4489 PF00854 POT family AK39_449 PF00512 His Kinase A (phospho-acceptor) domain AK39_449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_449 PF13426 PAS domain AK39_449 PF00672 HAMP domain AK39_4490 PF04203 Sortase domain AK39_4492 PF01381 Helix-turn-helix AK39_4493 PF06725 3D domain AK39_4493 PF01476 LysM domain AK39_4494 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_4494 PF00672 HAMP domain AK39_4494 PF02743 Cache domain AK39_4495 PF02673 Bacitracin resistance protein BacA AK39_45 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AK39_450 PF00486 Transcriptional regulatory protein, C terminal AK39_450 PF00072 Response regulator receiver domain AK39_4500 PF03372 Endonuclease/Exonuclease/phosphatase family AK39_4501 PF00882 Zinc dependent phospholipase C AK39_4503 PF08240 Alcohol dehydrogenase GroES-like domain AK39_4503 PF00107 Zinc-binding dehydrogenase AK39_4506 PF05547 Immune inhibitor A peptidase M6 AK39_4507 PF00923 Transaldolase/Fructose-6-phosphate aldolase AK39_4508 PF13407 Periplasmic binding protein domain AK39_4509 PF02653 Branched-chain amino acid transport system / permease component AK39_4510 PF00005 ABC transporter AK39_4511 PF05025 RbsD / FucU transport protein family AK39_4512 PF00294 pfkB family carbohydrate kinase AK39_4513 PF00356 Bacterial regulatory proteins, lacI family AK39_4514 PF07690 Major Facilitator Superfamily AK39_4515 PF07690 Major Facilitator Superfamily AK39_4516 PF01047 MarR family AK39_4517 PF07690 Major Facilitator Superfamily AK39_4518 PF00005 ABC transporter AK39_4518 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4519 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4519 PF00005 ABC transporter AK39_452 PF00850 Histone deacetylase domain AK39_4520 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4521 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4522 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_4524 PF00582 Universal stress protein family AK39_4525 PF00916 Sulfate permease family AK39_4525 PF01740 STAS domain AK39_4527 PF00072 Response regulator receiver domain AK39_4527 PF00486 Transcriptional regulatory protein, C terminal AK39_4528 PF00512 His Kinase A (phospho-acceptor) domain AK39_4528 PF00672 HAMP domain AK39_4528 PF18698 Histidine kinase sensor domain AK39_4528 PF00989 PAS fold AK39_4528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4529 PF01872 RibD C-terminal domain AK39_453 PF00571 CBS domain AK39_4530 PF08279 HTH domain AK39_4530 PF13280 WYL domain AK39_4535 PF00324 Amino acid permease AK39_4536 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4537 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4538 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK39_4539 PF00005 ABC transporter AK39_454 PF00583 Acetyltransferase (GNAT) family AK39_4540 PF01235 Sodium:alanine symporter family AK39_4541 PF01636 Phosphotransferase enzyme family AK39_4543 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_4546 PF16657 Maltogenic Amylase, C-terminal domain AK39_4546 PF00128 Alpha amylase, catalytic domain AK39_4547 PF00367 phosphotransferase system, EIIB AK39_4547 PF02378 Phosphotransferase system, EIIC AK39_4548 PF07702 UTRA domain AK39_4548 PF00392 Bacterial regulatory proteins, gntR family AK39_4549 PF13520 Amino acid permease AK39_455 PF00501 AMP-binding enzyme AK39_455 PF13193 AMP-binding enzyme C-terminal domain AK39_4550 PF00990 Diguanylate cyclase, GGDEF domain AK39_4550 PF00563 EAL domain AK39_4550 PF03707 Bacterial signalling protein N terminal repeat AK39_4553 PF13396 Phospholipase_D-nuclease N-terminal AK39_4553 PF13091 PLD-like domain AK39_4554 PF07728 AAA domain (dynein-related subfamily) AK39_4555 PF00092 von Willebrand factor type A domain AK39_4556 PF00293 NUDIX domain AK39_4556 PF13344 Haloacid dehalogenase-like hydrolase AK39_4557 PF01370 NAD dependent epimerase/dehydratase family AK39_4558 PF00155 Aminotransferase class I and II AK39_4559 PF08241 Methyltransferase domain AK39_4560 PF00005 ABC transporter AK39_4561 PF01032 FecCD transport family AK39_4562 PF01032 FecCD transport family AK39_4563 PF01497 Periplasmic binding protein AK39_4564 PF00854 POT family AK39_4565 PF08141 Small acid-soluble spore protein H family AK39_4566 PF01022 Bacterial regulatory protein, arsR family AK39_4567 PF02652 L-lactate permease AK39_4568 PF00206 Lyase AK39_4568 PF10415 Fumarase C C-terminus AK39_4569 PF00571 CBS domain AK39_4569 PF01595 Cyclin M transmembrane N-terminal domain AK39_4569 PF03471 Transporter associated domain AK39_457 PF08281 Sigma-70, region 4 AK39_457 PF04542 Sigma-70 region 2 AK39_4570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_4571 PF07662 Na+ dependent nucleoside transporter C-terminus AK39_4571 PF01773 Na+ dependent nucleoside transporter N-terminus AK39_4572 PF03816 Cell envelope-related transcriptional attenuator domain AK39_4573 PF04294 VanW like protein AK39_4577 PF07504 Fungalysin/Thermolysin Propeptide Motif AK39_4577 PF03413 Peptidase propeptide and YPEB domain AK39_4577 PF01447 Thermolysin metallopeptidase, catalytic domain AK39_4577 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK39_4581 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AK39_4581 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AK39_4581 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AK39_4582 PF00403 Heavy-metal-associated domain AK39_4583 PF01022 Bacterial regulatory protein, arsR family AK39_4584 PF13520 Amino acid permease AK39_4585 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AK39_4585 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AK39_4589 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK39_4589 PF00384 Molybdopterin oxidoreductase AK39_4589 PF01568 Molydopterin dinucleotide binding domain AK39_4589 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK39_4589 PF00037 4Fe-4S binding domain AK39_459 PF00579 tRNA synthetases class I (W and Y) AK39_459 PF01479 S4 domain AK39_4590 PF02634 FdhD/NarQ family AK39_4591 PF00583 Acetyltransferase (GNAT) family AK39_4591 PF13508 Acetyltransferase (GNAT) domain AK39_4593 PF00072 Response regulator receiver domain AK39_4593 PF00486 Transcriptional regulatory protein, C terminal AK39_4594 PF00989 PAS fold AK39_4594 PF00512 His Kinase A (phospho-acceptor) domain AK39_4594 PF00672 HAMP domain AK39_4594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4594 PF18698 Histidine kinase sensor domain AK39_4596 PF00392 Bacterial regulatory proteins, gntR family AK39_4596 PF00155 Aminotransferase class I and II AK39_4597 PF00892 EamA-like transporter family AK39_4599 PF00390 Malic enzyme, N-terminal domain AK39_4599 PF03949 Malic enzyme, NAD binding domain AK39_46 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AK39_4600 PF03390 2-hydroxycarboxylate transporter family AK39_4601 PF00072 Response regulator receiver domain AK39_4602 PF17203 Single cache domain 3 AK39_4602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4602 PF00989 PAS fold AK39_4602 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK39_4603 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_4603 PF02743 Cache domain AK39_4603 PF00672 HAMP domain AK39_4604 PF13529 Peptidase_C39 like family AK39_4606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4606 PF00512 His Kinase A (phospho-acceptor) domain AK39_4607 PF00072 Response regulator receiver domain AK39_4607 PF00486 Transcriptional regulatory protein, C terminal AK39_4608 PF00149 Calcineurin-like phosphoesterase AK39_4609 PF13416 Bacterial extracellular solute-binding protein AK39_4610 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4611 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4612 PF17912 MalK OB fold domain AK39_4612 PF00005 ABC transporter AK39_4613 PF04309 Glycerol-3-phosphate responsive antiterminator AK39_4617 PF03600 Citrate transporter AK39_462 PF00163 Ribosomal protein S4/S9 N-terminal domain AK39_462 PF01479 S4 domain AK39_4620 PF17203 Single cache domain 3 AK39_4620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4620 PF00989 PAS fold AK39_4620 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK39_4621 PF02743 Cache domain AK39_4621 PF00672 HAMP domain AK39_4621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_4622 PF01145 SPFH domain / Band 7 family AK39_4622 PF15975 Flotillin AK39_4624 PF08453 Peptidase family M9 N-terminal AK39_4624 PF01752 Collagenase AK39_4624 PF18496 Collagenase G catalytic helper subdomain AK39_4625 PF02028 BCCT, betaine/carnitine/choline family transporter AK39_4628 PF04285 Protein of unknown function (DUF444) AK39_4629 PF08298 PrkA AAA domain AK39_4629 PF06798 PrkA serine protein kinase C-terminal domain AK39_463 PF01053 Cys/Met metabolism PLP-dependent enzyme AK39_4631 PF00990 Diguanylate cyclase, GGDEF domain AK39_4631 PF00563 EAL domain AK39_4631 PF03707 Bacterial signalling protein N terminal repeat AK39_4632 PF00588 SpoU rRNA Methylase family AK39_4633 PF12671 Putative amidase domain AK39_4634 PF08331 Domain of unknown function (DUF1730) AK39_4636 PF13462 Thioredoxin AK39_4637 PF00905 Penicillin binding protein transpeptidase domain AK39_4637 PF00912 Transglycosylase AK39_4638 PF00293 NUDIX domain AK39_4638 PF13344 Haloacid dehalogenase-like hydrolase AK39_4639 PF01709 Transcriptional regulator AK39_464 PF13185 GAF domain AK39_465 PF00440 Bacterial regulatory proteins, tetR family AK39_466 PF00440 Bacterial regulatory proteins, tetR family AK39_4661 PF11023 Zinc-ribbon containing domain AK39_4662 PF01475 Ferric uptake regulator family AK39_4663 PF00578 AhpC/TSA family AK39_4664 PF07885 Ion channel AK39_4667 PF00005 ABC transporter AK39_4668 PF00202 Aminotransferase class-III AK39_4669 PF04898 Glutamate synthase central domain AK39_4669 PF01645 Conserved region in glutamate synthase AK39_4669 PF01493 GXGXG motif AK39_4669 PF00310 Glutamine amidotransferases class-II AK39_467 PF00892 EamA-like transporter family AK39_4670 PF06081 Aromatic acid exporter family member 1 AK39_4671 PF00005 ABC transporter AK39_4671 PF00664 ABC transporter transmembrane region AK39_4672 PF04167 Protein of unknown function (DUF402) AK39_4673 PF14182 YgaB-like protein AK39_4674 PF04259 Small, acid-soluble spore protein, gamma-type AK39_4676 PF14815 NUDIX domain AK39_4676 PF00730 HhH-GPD superfamily base excision DNA repair protein AK39_4677 PF04307 LexA-binding, inner membrane-associated putative hydrolase AK39_4678 PF14043 WVELL protein AK39_4679 PF08176 Small acid-soluble spore protein K family AK39_468 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_468 PF03466 LysR substrate binding domain AK39_4682 PF02631 RecX family AK39_4683 PF01370 NAD dependent epimerase/dehydratase family AK39_4683 PF08338 Domain of unknown function (DUF1731) AK39_4684 PF01979 Amidohydrolase family AK39_4687 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AK39_4687 PF04101 Glycosyltransferase family 28 C-terminal domain AK39_4688 PF04055 Radical SAM superfamily AK39_4689 PF02901 Pyruvate formate lyase-like AK39_4689 PF01228 Glycine radical AK39_469 PF06160 Septation ring formation regulator, EzrA AK39_4690 PF00535 Glycosyl transferase family 2 AK39_4691 PF01370 NAD dependent epimerase/dehydratase family AK39_4691 PF02911 Formyl transferase, C-terminal domain AK39_4691 PF00551 Formyl transferase AK39_4692 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK39_4692 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK39_4692 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK39_4693 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK39_4693 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK39_4693 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK39_4694 PF00535 Glycosyl transferase family 2 AK39_4697 PF00144 Beta-lactamase AK39_4698 PF00367 phosphotransferase system, EIIB AK39_4698 PF02378 Phosphotransferase system, EIIC AK39_4699 PF04960 Glutaminase AK39_470 PF00266 Aminotransferase class-V AK39_4704 PF07687 Peptidase dimerisation domain AK39_4704 PF01546 Peptidase family M20/M25/M40 AK39_4705 PF00324 Amino acid permease AK39_4707 PF02954 Bacterial regulatory protein, Fis family AK39_4707 PF13426 PAS domain AK39_4707 PF00158 Sigma-54 interaction domain AK39_4709 PF01416 tRNA pseudouridine synthase AK39_471 PF02926 THUMP domain AK39_471 PF02568 Thiamine biosynthesis protein (ThiI) AK39_4711 PF01183 Glycosyl hydrolases family 25 AK39_472 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK39_4756 PF01695 IstB-like ATP binding protein AK39_4756 PF07319 Primosomal protein DnaI N-terminus AK39_476 PF07969 Amidohydrolase family AK39_4763 PF01381 Helix-turn-helix AK39_4767 PF14659 Phage integrase, N-terminal SAM-like domain AK39_4767 PF00589 Phage integrase family AK39_4768 PF05958 tRNA (Uracil-5-)-methyltransferase AK39_4768 PF01938 TRAM domain AK39_4769 PF00730 HhH-GPD superfamily base excision DNA repair protein AK39_477 PF01513 ATP-NAD kinase AK39_4771 PF01522 Polysaccharide deacetylase AK39_4772 PF05681 Fumarate hydratase (Fumerase) AK39_4772 PF05683 Fumarase C-terminus AK39_4774 PF08756 YfkB-like domain AK39_4774 PF04055 Radical SAM superfamily AK39_4775 PF14167 YfkD-like protein AK39_4776 PF01699 Sodium/calcium exchanger protein AK39_4777 PF16242 Pyridoxamine 5'-phosphate oxidase like AK39_4780 PF09335 SNARE associated Golgi protein AK39_4782 PF10502 Signal peptidase, peptidase S26 AK39_4783 PF10502 Signal peptidase, peptidase S26 AK39_4785 PF00892 EamA-like transporter family AK39_4787 PF03631 Virulence factor BrkB AK39_4789 PF01451 Low molecular weight phosphotyrosine protein phosphatase AK39_479 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AK39_4790 PF06569 Protein of unknown function (DUF1128) AK39_4791 PF00690 Cation transporter/ATPase, N-terminus AK39_4791 PF00689 Cation transporting ATPase, C-terminus AK39_4792 PF05816 Toxic anion resistance protein (TelA) AK39_4793 PF14266 Putative component of 'biosynthetic module' AK39_4794 PF03741 Integral membrane protein TerC family AK39_4795 PF02342 TerD domain AK39_4796 PF02342 TerD domain AK39_4797 PF02342 TerD domain AK39_4798 PF00480 ROK family AK39_48 PF17202 Single cache domain 3 AK39_48 PF00672 HAMP domain AK39_48 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_480 PF08534 Redoxin AK39_4800 PF03129 Anticodon binding domain AK39_4800 PF09180 Prolyl-tRNA synthetase, C-terminal AK39_4800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK39_4803 PF11700 Vacuole effluxer Atg22 like AK39_4807 PF00440 Bacterial regulatory proteins, tetR family AK39_4807 PF08360 QacR-like protein, C-terminal region AK39_481 PF02384 N-6 DNA Methylase AK39_4811 PF00704 Glycosyl hydrolases family 18 AK39_4811 PF00041 Fibronectin type III domain AK39_4812 PF12848 ABC transporter AK39_4812 PF00005 ABC transporter AK39_4813 PF00005 ABC transporter AK39_4815 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4816 PF01910 Thiamine-binding protein AK39_4817 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_4817 PF00672 HAMP domain AK39_4818 PF03605 Anaerobic c4-dicarboxylate membrane transporter AK39_4819 PF02581 Thiamine monophosphate synthase AK39_482 PF00871 Acetokinase family AK39_4820 PF02110 Hydroxyethylthiazole kinase family AK39_4821 PF01751 Toprim domain AK39_4821 PF01131 DNA topoisomerase AK39_4822 PF01061 ABC-2 type transporter AK39_4823 PF03372 Endonuclease/Exonuclease/phosphatase family AK39_4824 PF02378 Phosphotransferase system, EIIC AK39_4824 PF00367 phosphotransferase system, EIIB AK39_4824 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK39_4825 PF00128 Alpha amylase, catalytic domain AK39_4825 PF16657 Maltogenic Amylase, C-terminal domain AK39_4826 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_4826 PF00672 HAMP domain AK39_4826 PF12729 Four helix bundle sensory module for signal transduction AK39_4827 PF00672 HAMP domain AK39_4827 PF12729 Four helix bundle sensory module for signal transduction AK39_4827 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_4828 PF00005 ABC transporter AK39_4829 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK39_4830 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4832 PF01266 FAD dependent oxidoreductase AK39_4832 PF00355 Rieske [2Fe-2S] domain AK39_4833 PF07690 Major Facilitator Superfamily AK39_4834 PF10127 RNA repair pathway DNA polymerase beta family AK39_4838 PF13426 PAS domain AK39_4838 PF00512 His Kinase A (phospho-acceptor) domain AK39_4838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4838 PF13188 PAS domain AK39_4838 PF00989 PAS fold AK39_4844 PF12728 Helix-turn-helix domain AK39_4846 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_4847 PF01497 Periplasmic binding protein AK39_4848 PF01032 FecCD transport family AK39_4849 PF01032 FecCD transport family AK39_485 PF12787 EcsC protein family AK39_4850 PF00596 Class II Aldolase and Adducin N-terminal domain AK39_4852 PF01636 Phosphotransferase enzyme family AK39_4853 PF00578 AhpC/TSA family AK39_4854 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_4854 PF13192 Thioredoxin domain AK39_4856 PF07687 Peptidase dimerisation domain AK39_4856 PF01546 Peptidase family M20/M25/M40 AK39_4859 PF13378 Enolase C-terminal domain-like AK39_4859 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK39_486 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_486 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_4862 PF07308 Protein of unknown function (DUF1456) AK39_4864 PF01207 Dihydrouridine synthase (Dus) AK39_4865 PF05958 tRNA (Uracil-5-)-methyltransferase AK39_4865 PF02475 Met-10+ like-protein AK39_4865 PF01938 TRAM domain AK39_4866 PF01773 Na+ dependent nucleoside transporter N-terminus AK39_4866 PF07662 Na+ dependent nucleoside transporter C-terminus AK39_4866 PF07670 Nucleoside recognition AK39_4869 PF02073 Thermophilic metalloprotease (M29) AK39_4870 PF00893 Small Multidrug Resistance protein AK39_4871 PF00171 Aldehyde dehydrogenase family AK39_4872 PF00158 Sigma-54 interaction domain AK39_4873 PF00202 Aminotransferase class-III AK39_4874 PF13419 Haloacid dehalogenase-like hydrolase AK39_4875 PF00781 Diacylglycerol kinase catalytic domain AK39_4876 PF02637 GatB domain AK39_4876 PF02934 GatB/GatE catalytic domain AK39_4877 PF01425 Amidase AK39_4878 PF02686 Glu-tRNAGln amidotransferase C subunit AK39_4880 PF01047 MarR family AK39_4881 PF02374 Anion-transporting ATPase AK39_4881 PF17886 HSP20-like domain found in ArsA AK39_4882 PF02374 Anion-transporting ATPase AK39_4882 PF17886 HSP20-like domain found in ArsA AK39_4885 PF03180 NLPA lipoprotein AK39_4886 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4887 PF09383 NIL domain AK39_4887 PF00005 ABC transporter AK39_4888 PF00857 Isochorismatase family AK39_4890 PF00171 Aldehyde dehydrogenase family AK39_4891 PF01925 Sulfite exporter TauE/SafE AK39_4892 PF07537 CamS sex pheromone cAM373 precursor AK39_4893 PF12826 Helix-hairpin-helix motif AK39_4893 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AK39_4893 PF03120 NAD-dependent DNA ligase OB-fold domain AK39_4893 PF00533 BRCA1 C Terminus (BRCT) domain AK39_4893 PF01653 NAD-dependent DNA ligase adenylation domain AK39_4894 PF00580 UvrD/REP helicase N-terminal domain AK39_4894 PF13361 UvrD-like helicase C-terminal domain AK39_4895 PF01884 PcrB family AK39_4899 PF02843 Phosphoribosylglycinamide synthetase, C domain AK39_4899 PF02844 Phosphoribosylglycinamide synthetase, N domain AK39_4899 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AK39_490 PF00764 Arginosuccinate synthase AK39_4900 PF02142 MGS-like domain AK39_4900 PF01808 AICARFT/IMPCHase bienzyme AK39_4901 PF00551 Formyl transferase AK39_4902 PF02769 AIR synthase related protein, C-terminal domain AK39_4902 PF00586 AIR synthase related protein, N-terminal domain AK39_4903 PF00156 Phosphoribosyl transferase domain AK39_4904 PF00586 AIR synthase related protein, N-terminal domain AK39_4904 PF02769 AIR synthase related protein, C-terminal domain AK39_4904 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AK39_4906 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AK39_4907 PF01259 SAICAR synthetase AK39_4908 PF10397 Adenylosuccinate lyase C-terminus AK39_4908 PF00206 Lyase AK39_4909 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AK39_4909 PF02222 ATP-grasp domain AK39_491 PF00206 Lyase AK39_491 PF14698 Argininosuccinate lyase C-terminal AK39_4910 PF00731 AIR carboxylase AK39_4915 PF00072 Response regulator receiver domain AK39_4915 PF00486 Transcriptional regulatory protein, C terminal AK39_4916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4916 PF00512 His Kinase A (phospho-acceptor) domain AK39_4917 PF00005 ABC transporter AK39_4919 PF02673 Bacitracin resistance protein BacA AK39_4923 PF00535 Glycosyl transferase family 2 AK39_4929 PF08241 Methyltransferase domain AK39_4931 PF14307 Glycosyltransferase WbsX AK39_4931 PF05045 Rhamnan synthesis protein F AK39_4936 PF16736 Single Cache-like AK39_4936 PF00989 PAS fold AK39_4936 PF00512 His Kinase A (phospho-acceptor) domain AK39_4936 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_4937 PF00486 Transcriptional regulatory protein, C terminal AK39_4937 PF00072 Response regulator receiver domain AK39_4938 PF00860 Permease family AK39_4939 PF00958 GMP synthase C terminal domain AK39_4939 PF00117 Glutamine amidotransferase class-I AK39_4939 PF02540 NAD synthase AK39_4940 PF00118 TCP-1/cpn60 chaperonin family AK39_4941 PF00166 Chaperonin 10 Kd subunit AK39_4942 PF02517 CPBP intramembrane metalloprotease AK39_4944 PF06971 Putative DNA-binding protein N-terminus AK39_4944 PF02629 CoA binding domain AK39_4945 PF16326 ABC transporter C-terminal domain AK39_4945 PF00005 ABC transporter AK39_4945 PF12848 ABC transporter AK39_4946 PF00814 Glycoprotease family AK39_4947 PF00583 Acetyltransferase (GNAT) family AK39_4948 PF00814 Glycoprotease family AK39_4949 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AK39_495 PF00582 Universal stress protein family AK39_4967 PF10263 SprT-like family AK39_4967 PF17283 SprT-like zinc ribbon domain AK39_4968 PF16921 Tex protein YqgF-like domain AK39_4968 PF09371 Tex-like protein N-terminal domain AK39_4968 PF00575 S1 RNA binding domain AK39_4968 PF17674 HHH domain AK39_4969 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AK39_497 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AK39_497 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AK39_4970 PF01402 Ribbon-helix-helix protein, copG family AK39_4971 PF01168 Alanine racemase, N-terminal domain AK39_4971 PF00842 Alanine racemase, C-terminal domain AK39_4973 PF01648 4'-phosphopantetheinyl transferase superfamily AK39_4974 PF03851 UV-endonuclease UvdE AK39_4975 PF01694 Rhomboid family AK39_4976 PF00271 Helicase conserved C-terminal domain AK39_4976 PF00270 DEAD/DEAH box helicase AK39_4977 PF01225 Mur ligase family, catalytic domain AK39_4977 PF08245 Mur ligase middle domain AK39_4977 PF02875 Mur ligase family, glutamate ligase domain AK39_4978 PF01820 D-ala D-ala ligase N-terminus AK39_4978 PF07478 D-ala D-ala ligase C-terminus AK39_4979 PF07478 D-ala D-ala ligase C-terminus AK39_4979 PF01820 D-ala D-ala ligase N-terminus AK39_4980 PF07690 Major Facilitator Superfamily AK39_4982 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK39_4983 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_4987 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4987 PF00005 ABC transporter AK39_4989 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_4989 PF00005 ABC transporter AK39_499 PF01381 Helix-turn-helix AK39_4991 PF00528 Binding-protein-dependent transport system inner membrane component AK39_4992 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_4995 PF12848 ABC transporter AK39_4995 PF16326 ABC transporter C-terminal domain AK39_4995 PF00005 ABC transporter AK39_4999 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) AK39_5 PF02899 Phage integrase, N-terminal SAM-like domain AK39_5 PF00589 Phage integrase family AK39_50 PF01565 FAD binding domain AK39_50 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AK39_5000 PF01026 TatD related DNase AK39_5003 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_5003 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_5005 PF00356 Bacterial regulatory proteins, lacI family AK39_5005 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK39_5007 PF01553 Acyltransferase AK39_5009 PF14142 YrzO-like protein AK39_501 PF07883 Cupin domain AK39_5010 PF00892 EamA-like transporter family AK39_5011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_5011 PF03466 LysR substrate binding domain AK39_5014 PF12728 Helix-turn-helix domain AK39_5014 PF12727 PBP superfamily domain AK39_5017 PF00528 Binding-protein-dependent transport system inner membrane component AK39_5018 PF06800 Sugar transport protein AK39_5019 PF04973 Nicotinamide mononucleotide transporter AK39_502 PF12746 GNAT acetyltransferase AK39_5020 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK39_5020 PF03807 NADP oxidoreductase coenzyme F420-dependent AK39_5021 PF00248 Aldo/keto reductase family AK39_5022 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_5023 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_5026 PF12833 Helix-turn-helix domain AK39_5028 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_5029 PF00005 ABC transporter AK39_5029 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_5030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_5030 PF00005 ABC transporter AK39_5031 PF00528 Binding-protein-dependent transport system inner membrane component AK39_5031 PF12911 N-terminal TM domain of oligopeptide transport permease C AK39_5032 PF00528 Binding-protein-dependent transport system inner membrane component AK39_5035 PF07690 Major Facilitator Superfamily AK39_5037 PF07690 Major Facilitator Superfamily AK39_5038 PF01565 FAD binding domain AK39_5041 PF03180 NLPA lipoprotein AK39_5042 PF09383 NIL domain AK39_5042 PF00005 ABC transporter AK39_5043 PF00528 Binding-protein-dependent transport system inner membrane component AK39_5052 PF00326 Prolyl oligopeptidase family AK39_5052 PF07676 WD40-like Beta Propeller Repeat AK39_5053 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AK39_5053 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK39_5054 PF02447 GntP family permease AK39_5055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_5055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_5056 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK39_5056 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK39_5057 PF07729 FCD domain AK39_5057 PF00392 Bacterial regulatory proteins, gntR family AK39_5058 PF00561 alpha/beta hydrolase fold AK39_5059 PF01380 SIS domain AK39_5060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK39_5060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK39_5060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK39_5060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK39_5061 PF07949 YbbR-like protein AK39_5062 PF02457 DisA bacterial checkpoint controller nucleotide-binding AK39_5063 PF00491 Arginase family AK39_5064 PF02595 Glycerate kinase family AK39_5065 PF02595 Glycerate kinase family AK39_508 PF11518 Protein of unknown function (DUF3221) AK39_5080 PF01522 Polysaccharide deacetylase AK39_5081 PF14089 KinB-signalling pathway activation in sporulation AK39_5082 PF17898 Spore germination GerD central core domain AK39_5083 PF10609 NUBPL iron-transfer P-loop NTPase AK39_5084 PF01520 N-acetylmuramoyl-L-alanine amidase AK39_5086 PF00380 Ribosomal protein S9/S16 AK39_5087 PF00572 Ribosomal protein L13 AK39_5088 PF01416 tRNA pseudouridine synthase AK39_5089 PF02361 Cobalt transport protein AK39_509 PF00557 Metallopeptidase family M24 AK39_509 PF01321 Creatinase/Prolidase N-terminal domain AK39_5090 PF00005 ABC transporter AK39_5091 PF00005 ABC transporter AK39_5092 PF01196 Ribosomal protein L17 AK39_5093 PF01000 RNA polymerase Rpb3/RpoA insert domain AK39_5093 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AK39_5093 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AK39_5094 PF00411 Ribosomal protein S11 AK39_5095 PF00416 Ribosomal protein S13/S18 AK39_5096 PF00444 Ribosomal protein L36 AK39_5097 PF01176 Translation initiation factor 1A / IF-1 AK39_5098 PF00557 Metallopeptidase family M24 AK39_5099 PF05191 Adenylate kinase, active site lid AK39_51 PF01479 S4 domain AK39_51 PF00579 tRNA synthetases class I (W and Y) AK39_5100 PF00344 SecY translocase AK39_5101 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AK39_5102 PF00327 Ribosomal protein L30p/L7e AK39_5103 PF00333 Ribosomal protein S5, N-terminal domain AK39_5103 PF03719 Ribosomal protein S5, C-terminal domain AK39_5104 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AK39_5105 PF00347 Ribosomal protein L6 AK39_5106 PF00410 Ribosomal protein S8 AK39_5107 PF00253 Ribosomal protein S14p/S29e AK39_5108 PF00281 Ribosomal protein L5 AK39_5108 PF00673 ribosomal L5P family C-terminus AK39_5109 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AK39_5109 PF00467 KOW motif AK39_5110 PF00238 Ribosomal protein L14p/L23e AK39_5111 PF00366 Ribosomal protein S17 AK39_5112 PF00831 Ribosomal L29 protein AK39_5113 PF00252 Ribosomal protein L16p/L10e AK39_5114 PF07650 KH domain AK39_5114 PF00189 Ribosomal protein S3, C-terminal domain AK39_5115 PF00237 Ribosomal protein L22p/L17e AK39_5116 PF00203 Ribosomal protein S19 AK39_5117 PF00181 Ribosomal Proteins L2, RNA binding domain AK39_5117 PF03947 Ribosomal Proteins L2, C-terminal domain AK39_5118 PF00276 Ribosomal protein L23 AK39_5119 PF00573 Ribosomal protein L4/L1 family AK39_512 PF03061 Thioesterase superfamily AK39_512 PF00392 Bacterial regulatory proteins, gntR family AK39_512 PF07085 DRTGG domain AK39_512 PF00571 CBS domain AK39_5120 PF00297 Ribosomal protein L3 AK39_5121 PF00338 Ribosomal protein S10p/S20e AK39_5122 PF03143 Elongation factor Tu C-terminal domain AK39_5122 PF00009 Elongation factor Tu GTP binding domain AK39_5122 PF03144 Elongation factor Tu domain 2 AK39_5123 PF00679 Elongation factor G C-terminus AK39_5123 PF03144 Elongation factor Tu domain 2 AK39_5123 PF00009 Elongation factor Tu GTP binding domain AK39_5123 PF14492 Elongation Factor G, domain II AK39_5123 PF03764 Elongation factor G, domain IV AK39_5124 PF00177 Ribosomal protein S7p/S5e AK39_5125 PF00164 Ribosomal protein S12/S23 AK39_5126 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AK39_5127 PF05000 RNA polymerase Rpb1, domain 4 AK39_5127 PF04998 RNA polymerase Rpb1, domain 5 AK39_5127 PF04997 RNA polymerase Rpb1, domain 1 AK39_5127 PF00623 RNA polymerase Rpb1, domain 2 AK39_5127 PF04983 RNA polymerase Rpb1, domain 3 AK39_5128 PF04560 RNA polymerase Rpb2, domain 7 AK39_5128 PF04563 RNA polymerase beta subunit AK39_5128 PF10385 RNA polymerase beta subunit external 1 domain AK39_5128 PF04565 RNA polymerase Rpb2, domain 3 AK39_5128 PF04561 RNA polymerase Rpb2, domain 2 AK39_5128 PF00562 RNA polymerase Rpb2, domain 6 AK39_5129 PF05175 Methyltransferase small domain AK39_5130 PF16320 Ribosomal protein L7/L12 dimerisation domain AK39_5130 PF00542 Ribosomal protein L7/L12 C-terminal domain AK39_5131 PF00466 Ribosomal protein L10 AK39_5132 PF00687 Ribosomal protein L1p/L10e family AK39_5133 PF00298 Ribosomal protein L11, RNA binding domain AK39_5133 PF03946 Ribosomal protein L11, N-terminal domain AK39_5134 PF00467 KOW motif AK39_5134 PF02357 Transcription termination factor nusG AK39_5135 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AK39_5136 PF04542 Sigma-70 region 2 AK39_5136 PF08281 Sigma-70, region 4 AK39_5137 PF05991 YacP-like NYN domain AK39_5138 PF00588 SpoU rRNA Methylase family AK39_5138 PF08032 RNA 2'-O ribose methyltransferase substrate binding AK39_5139 PF00636 Ribonuclease III domain AK39_5140 PF01406 tRNA synthetases class I (C) catalytic domain AK39_5140 PF09190 DALR domain AK39_5141 PF00132 Bacterial transferase hexapeptide (six repeats) AK39_5141 PF06426 Serine acetyltransferase, N-terminal AK39_5142 PF00749 tRNA synthetases class I (E and Q), catalytic domain AK39_5143 PF02542 YgbB family AK39_5144 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AK39_5146 PF10635 DisA bacterial checkpoint controller linker region AK39_5146 PF02457 DisA bacterial checkpoint controller nucleotide-binding AK39_5147 PF18073 Rubredoxin metal binding domain AK39_5148 PF07724 AAA domain (Cdc48 subfamily) AK39_5148 PF17871 AAA lid domain AK39_5148 PF02861 Clp amino terminal domain, pathogenicity island component AK39_5148 PF10431 C-terminal, D2-small domain, of ClpB protein AK39_5148 PF00004 ATPase family associated with various cellular activities (AAA) AK39_5149 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AK39_515 PF14007 YtpI-like protein AK39_5150 PF02151 UvrB/uvrC motif AK39_5151 PF05848 CtsR N-terminal HTH domain AK39_5151 PF17727 CtsR C-terminal dimerization domain AK39_5156 PF01336 OB-fold nucleic acid binding domain AK39_5156 PF00152 tRNA synthetases class II (D, K and N) AK39_5157 PF01207 Dihydrouridine synthase (Dus) AK39_5158 PF01381 Helix-turn-helix AK39_5159 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AK39_516 PF01368 DHH family AK39_516 PF02272 DHHA1 domain AK39_5160 PF02152 Dihydroneopterin aldolase AK39_5161 PF00809 Pterin binding enzyme AK39_5162 PF01063 Amino-transferase class IV AK39_5163 PF00117 Glutamine amidotransferase class-I AK39_5164 PF04715 Anthranilate synthase component I, N terminal region AK39_5164 PF00425 chorismate binding enzyme AK39_5165 PF00291 Pyridoxal-phosphate dependent enzyme AK39_5166 PF01430 Hsp33 protein AK39_5167 PF03309 Type III pantothenate kinase AK39_5168 PF01434 Peptidase family M41 AK39_5168 PF00004 ATPase family associated with various cellular activities (AAA) AK39_5168 PF06480 FtsH Extracellular AK39_5168 PF17862 AAA+ lid domain AK39_5170 PF11734 TilS substrate C-terminal domain AK39_5170 PF09179 TilS substrate binding domain AK39_5170 PF01171 PP-loop family AK39_5171 PF07228 Stage II sporulation protein E (SpoIIE) AK39_5174 PF00575 S1 RNA binding domain AK39_5176 PF09578 Spore cortex protein YabQ (Spore_YabQ) AK39_5177 PF07873 YabP family AK39_5178 PF01479 S4 domain AK39_5179 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK39_5179 PF03819 MazG nucleotide pyrophosphohydrolase domain AK39_518 PF14034 Sporulation protein YtrH AK39_5180 PF14667 Polysaccharide biosynthesis C-terminal domain AK39_5180 PF01943 Polysaccharide biosynthesis protein AK39_5181 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK39_5181 PF15714 Stage V sporulation protein T C-terminal, transcription factor AK39_5182 PF17757 UvrB interaction domain AK39_5182 PF00271 Helicase conserved C-terminal domain AK39_5182 PF03461 TRCF domain AK39_5182 PF00270 DEAD/DEAH box helicase AK39_5182 PF02559 CarD-like/TRCF domain AK39_5184 PF01195 Peptidyl-tRNA hydrolase AK39_5185 PF14572 Phosphoribosyl synthetase-associated domain AK39_5185 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AK39_5186 PF00483 Nucleotidyl transferase AK39_5186 PF00132 Bacterial transferase hexapeptide (six repeats) AK39_5187 PF04026 SpoVG AK39_5188 PF01042 Endoribonuclease L-PSP AK39_5189 PF09182 Bacterial purine repressor, N-terminal AK39_5189 PF00156 Phosphoribosyl transferase domain AK39_519 PF01336 OB-fold nucleic acid binding domain AK39_519 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK39_519 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK39_519 PF14579 Helix-hairpin-helix motif AK39_519 PF02811 PHP domain AK39_5190 PF08544 GHMP kinases C terminal AK39_5190 PF00288 GHMP kinases N terminal domain AK39_5191 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK39_5192 PF06257 Biofilm formation stimulator VEG AK39_5193 PF05582 YabG peptidase U57 AK39_5194 PF00398 Ribosomal RNA adenine dimethylase AK39_5195 PF13331 Domain of unknown function (DUF4093) AK39_5195 PF13662 Toprim domain AK39_5196 PF01026 TatD related DNase AK39_5197 PF01588 Putative tRNA binding domain AK39_5197 PF09334 tRNA synthetases class I (M) AK39_5197 PF08264 Anticodon-binding domain of tRNA AK39_5198 PF18277 AbrB C-terminal domain AK39_5198 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK39_5199 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK39_52 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_520 PF03949 Malic enzyme, NAD binding domain AK39_520 PF00390 Malic enzyme, N-terminal domain AK39_5200 PF01541 GIY-YIG catalytic domain AK39_5201 PF05175 Methyltransferase small domain AK39_5202 PF06156 Initiation control protein YabA AK39_5203 PF04468 PSP1 C-terminal conserved region AK39_5204 PF09115 DNA polymerase III, delta subunit, C terminal AK39_5205 PF02223 Thymidylate kinase AK39_5206 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AK39_5206 PF01276 Orn/Lys/Arg decarboxylase, major domain AK39_521 PF00392 Bacterial regulatory proteins, gntR family AK39_5214 PF07441 SigmaK-factor processing regulatory protein BofA AK39_5215 PF10704 Protein of unknown function (DUF2508) AK39_5216 PF13662 Toprim domain AK39_5216 PF02132 RecR protein AK39_5217 PF02575 YbaB/EbfC DNA-binding family AK39_5218 PF12169 DNA polymerase III subunits gamma and tau domain III AK39_5219 PF14437 MafB19-like deaminase AK39_522 PF01039 Carboxyl transferase domain AK39_522 PF17848 Acetyl-coA carboxylase zinc finger domain AK39_5220 PF00857 Isochorismatase family AK39_5221 PF01712 Deoxynucleoside kinase AK39_5222 PF01712 Deoxynucleoside kinase AK39_5225 PF02403 Seryl-tRNA synthetase N-terminal domain AK39_5225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK39_5226 PF01174 SNO glutamine amidotransferase family AK39_5227 PF01680 SOR/SNZ family AK39_5228 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_5228 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_5229 PF00478 IMP dehydrogenase / GMP reductase domain AK39_5229 PF00571 CBS domain AK39_523 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AK39_5230 PF14175 YaaC-like Protein AK39_5237 PF03989 DNA gyrase C-terminal domain, beta-propeller AK39_5237 PF00521 DNA gyrase/topoisomerase IV, subunit A AK39_5238 PF00204 DNA gyrase B AK39_5238 PF00986 DNA gyrase B subunit, carboxyl terminus AK39_5238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_5238 PF01751 Toprim domain AK39_5239 PF02463 RecF/RecN/SMC N terminal domain AK39_524 PF00365 Phosphofructokinase AK39_5241 PF02767 DNA polymerase III beta subunit, central domain AK39_5241 PF02768 DNA polymerase III beta subunit, C-terminal domain AK39_5241 PF00712 DNA polymerase III beta subunit, N-terminal domain AK39_5242 PF00308 Bacterial dnaA protein AK39_5242 PF08299 Bacterial dnaA protein helix-turn-helix AK39_5242 PF11638 DnaA N-terminal domain AK39_5243 PF00468 Ribosomal protein L34 AK39_5244 PF00825 Ribonuclease P AK39_5245 PF02096 60Kd inner membrane protein AK39_5246 PF14804 Jag N-terminus AK39_5246 PF01424 R3H domain AK39_5247 PF10396 GTP-binding protein TrmE N-terminus AK39_5247 PF01926 50S ribosome-binding GTPase AK39_5247 PF12631 MnmE helical domain AK39_5248 PF13932 GidA associated domain AK39_5248 PF01134 Glucose inhibited division protein A AK39_5249 PF02527 rRNA small subunit methyltransferase G AK39_525 PF00391 PEP-utilising enzyme, mobile domain AK39_525 PF00224 Pyruvate kinase, barrel domain AK39_525 PF02887 Pyruvate kinase, alpha/beta domain AK39_5250 PF17762 HTH domain found in ParB protein AK39_5250 PF02195 ParB-like nuclease domain AK39_5251 PF13614 AAA domain AK39_5252 PF02195 ParB-like nuclease domain AK39_5252 PF17762 HTH domain found in ParB protein AK39_5253 PF06866 Protein of unknown function (DUF1256) AK39_5254 PF00924 Mechanosensitive ion channel AK39_5255 PF06107 Bacterial protein of unknown function (DUF951) AK39_5256 PF01926 50S ribosome-binding GTPase AK39_5256 PF06071 Protein of unknown function (DUF933) AK39_5257 PF01250 Ribosomal protein S6 AK39_5258 PF00436 Single-strand binding protein family AK39_5259 PF01084 Ribosomal protein S18 AK39_526 PF04186 FxsA cytoplasmic membrane protein AK39_5260 PF09991 Predicted membrane protein (DUF2232) AK39_5261 PF02272 DHHA1 domain AK39_5261 PF01368 DHH family AK39_5262 PF01281 Ribosomal protein L9, N-terminal domain AK39_5262 PF03948 Ribosomal protein L9, C-terminal domain AK39_5263 PF00772 DnaB-like helicase N terminal domain AK39_5263 PF03796 DnaB-like helicase C terminal domain AK39_5264 PF00709 Adenylosuccinate synthetase AK39_5269 PF00486 Transcriptional regulatory protein, C terminal AK39_5269 PF00072 Response regulator receiver domain AK39_527 PF01594 AI-2E family transporter AK39_5270 PF00672 HAMP domain AK39_5270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_5270 PF00512 His Kinase A (phospho-acceptor) domain AK39_5270 PF13426 PAS domain AK39_5271 PF07435 YycH protein AK39_5272 PF09648 YycH protein AK39_5273 PF00753 Metallo-beta-lactamase superfamily AK39_5274 PF13180 PDZ domain AK39_5276 PF02590 Predicted SPOUT methyltransferase AK39_5278 PF01432 Peptidase family M3 AK39_5278 PF08439 Oligopeptidase F AK39_5279 PF00478 IMP dehydrogenase / GMP reductase domain AK39_528 PF04284 Protein of unknown function (DUF441) AK39_5281 PF00270 DEAD/DEAH box helicase AK39_5281 PF03880 DbpA RNA binding domain AK39_5281 PF00271 Helicase conserved C-terminal domain AK39_5283 PF03006 Haemolysin-III related AK39_5284 PF16363 GDP-mannose 4,6 dehydratase AK39_5286 PF02293 AmiS/UreI family transporter AK39_5288 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK39_5288 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK39_5289 PF02898 Nitric oxide synthase, oxygenase domain AK39_529 PF00285 Citrate synthase, C-terminal domain AK39_5290 PF02028 BCCT, betaine/carnitine/choline family transporter AK39_5291 PF07690 Major Facilitator Superfamily AK39_5292 PF07694 5TMR of 5TMR-LYT AK39_5292 PF13492 GAF domain AK39_5292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_5292 PF06580 Histidine kinase AK39_5293 PF00072 Response regulator receiver domain AK39_5293 PF04397 LytTr DNA-binding domain AK39_5294 PF03788 LrgA family AK39_5295 PF04172 LrgB-like family AK39_5296 PF01594 AI-2E family transporter AK39_5297 PF01625 Peptide methionine sulfoxide reductase AK39_5297 PF01641 SelR domain AK39_5298 PF00873 AcrB/AcrD/AcrF family AK39_5299 PF00440 Bacterial regulatory proteins, tetR family AK39_53 PF07849 Protein of unknown function (DUF1641) AK39_530 PF00180 Isocitrate/isopropylmalate dehydrogenase AK39_5300 PF00535 Glycosyl transferase family 2 AK39_5305 PF12848 ABC transporter AK39_5305 PF00005 ABC transporter AK39_5306 PF00535 Glycosyl transferase family 2 AK39_5308 PF03061 Thioesterase superfamily AK39_531 PF00056 lactate/malate dehydrogenase, NAD binding domain AK39_531 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK39_5310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_5311 PF03458 UPF0126 domain AK39_5314 PF03808 Glycosyl transferase WecB/TagA/CpsF family AK39_5315 PF07690 Major Facilitator Superfamily AK39_5316 PF04397 LytTr DNA-binding domain AK39_5316 PF00072 Response regulator receiver domain AK39_5317 PF13722 5TM C-terminal transporter carbon starvation CstA AK39_5317 PF02554 Carbon starvation protein CstA AK39_5318 PF04328 Selenoprotein, putative AK39_5319 PF00990 Diguanylate cyclase, GGDEF domain AK39_5319 PF07694 5TMR of 5TMR-LYT AK39_5320 PF08543 Phosphomethylpyrimidine kinase AK39_5321 PF07730 Histidine kinase AK39_5321 PF13185 GAF domain AK39_5322 PF07730 Histidine kinase AK39_5322 PF13185 GAF domain AK39_5323 PF00072 Response regulator receiver domain AK39_5323 PF00196 Bacterial regulatory proteins, luxR family AK39_5324 PF02525 Flavodoxin-like fold AK39_5325 PF00027 Cyclic nucleotide-binding domain AK39_5326 PF13419 Haloacid dehalogenase-like hydrolase AK39_5328 PF01053 Cys/Met metabolism PLP-dependent enzyme AK39_5329 PF04204 Homoserine O-succinyltransferase AK39_5330 PF03447 Homoserine dehydrogenase, NAD binding domain AK39_5330 PF00742 Homoserine dehydrogenase AK39_5330 PF01842 ACT domain AK39_5332 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK39_5332 PF00356 Bacterial regulatory proteins, lacI family AK39_5333 PF13472 GDSL-like Lipase/Acylhydrolase family AK39_5334 PF00005 ABC transporter AK39_5335 PF12679 ABC-2 family transporter protein AK39_5336 PF03167 Uracil DNA glycosylase superfamily AK39_5337 PF12823 Domain of unknown function (DUF3817) AK39_5339 PF00860 Permease family AK39_534 PF00072 Response regulator receiver domain AK39_534 PF00486 Transcriptional regulatory protein, C terminal AK39_5340 PF02254 TrkA-N domain AK39_5340 PF07885 Ion channel AK39_5342 PF04241 Protein of unknown function (DUF423) AK39_5343 PF09671 Spore coat protein (Spore_GerQ) AK39_5344 PF07486 Cell Wall Hydrolase AK39_5345 PF00768 D-alanyl-D-alanine carboxypeptidase AK39_5345 PF07943 Penicillin-binding protein 5, C-terminal domain AK39_5347 PF01515 Phosphate acetyl/butaryl transferase AK39_5348 PF03099 Biotin/lipoate A/B protein ligase family AK39_535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_535 PF00989 PAS fold AK39_535 PF16736 Single Cache-like AK39_535 PF00512 His Kinase A (phospho-acceptor) domain AK39_5351 PF07293 Protein of unknown function (DUF1450) AK39_5352 PF01032 FecCD transport family AK39_5353 PF01032 FecCD transport family AK39_5354 PF01032 FecCD transport family AK39_5355 PF00005 ABC transporter AK39_5356 PF01497 Periplasmic binding protein AK39_5357 PF01966 HD domain AK39_5358 PF01361 Tautomerase enzyme AK39_5359 PF02163 Peptidase family M50 AK39_536 PF00476 DNA polymerase family A AK39_536 PF01367 5'-3' exonuclease, C-terminal SAM fold AK39_536 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK39_5360 PF08741 YwhD family AK39_5361 PF00905 Penicillin binding protein transpeptidase domain AK39_5361 PF00912 Transglycosylase AK39_5362 PF03009 Glycerophosphoryl diester phosphodiesterase family AK39_5363 PF13411 MerR HTH family regulatory protein AK39_5364 PF07690 Major Facilitator Superfamily AK39_5365 PF17284 Spermidine synthase tetramerisation domain AK39_5366 PF00491 Arginase family AK39_5369 PF17676 LD-carboxypeptidase C-terminal domain AK39_5369 PF02016 LD-carboxypeptidase N-terminal domain AK39_537 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AK39_537 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AK39_537 PF06827 Zinc finger found in FPG and IleRS AK39_5370 PF09148 Domain of unknown function (DUF1934) AK39_5371 PF00750 tRNA synthetases class I (R) AK39_5371 PF03485 Arginyl tRNA synthetase N terminal domain AK39_5371 PF05746 DALR anticodon binding domain AK39_5372 PF04542 Sigma-70 region 2 AK39_5372 PF08281 Sigma-70, region 4 AK39_5376 PF02225 PA domain AK39_5376 PF04389 Peptidase family M28 AK39_5377 PF01473 Putative cell wall binding repeat AK39_5377 PF02324 Glycosyl hydrolase family 70 AK39_538 PF02659 Putative manganese efflux pump AK39_5380 PF00557 Metallopeptidase family M24 AK39_5381 PF00005 ABC transporter AK39_5383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_5383 PF07730 Histidine kinase AK39_5384 PF00196 Bacterial regulatory proteins, luxR family AK39_5384 PF00072 Response regulator receiver domain AK39_5388 PF00563 EAL domain AK39_5388 PF03707 Bacterial signalling protein N terminal repeat AK39_5388 PF00990 Diguanylate cyclase, GGDEF domain AK39_5389 PF03851 UV-endonuclease UvdE AK39_539 PF01121 Dephospho-CoA kinase AK39_5390 PF13091 PLD-like domain AK39_5391 PF13183 4Fe-4S dicluster domain AK39_5391 PF02754 Cysteine-rich domain AK39_5392 PF00108 Thiolase, N-terminal domain AK39_5392 PF02803 Thiolase, C-terminal domain AK39_5393 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AK39_5393 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AK39_5394 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK39_5394 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK39_5394 PF02770 Acyl-CoA dehydrogenase, middle domain AK39_5395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK39_5395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK39_5395 PF02770 Acyl-CoA dehydrogenase, middle domain AK39_5397 PF05066 HB1, ASXL, restriction endonuclease HTH domain AK39_5398 PF06418 CTP synthase N-terminus AK39_5398 PF00117 Glutamine amidotransferase class-I AK39_5399 PF10740 Domain of unknown function (DUF2529) AK39_54 PF01638 HxlR-like helix-turn-helix AK39_540 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK39_540 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AK39_5400 PF00072 Response regulator receiver domain AK39_5401 PF01116 Fructose-bisphosphate aldolase class-II AK39_5402 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK39_5403 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AK39_5404 PF07498 Rho termination factor, N-terminal domain AK39_5404 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK39_5404 PF07497 Rho termination factor, RNA-binding domain AK39_5405 PF01197 Ribosomal protein L31 AK39_5406 PF00265 Thymidine kinase AK39_5407 PF03462 PCRF domain AK39_5407 PF00472 RF-1 domain AK39_5408 PF17827 PrmC N-terminal domain AK39_5408 PF13847 Methyltransferase domain AK39_5409 PF09551 Stage II sporulation protein R (spore_II_R) AK39_541 PF02675 S-adenosylmethionine decarboxylase AK39_5411 PF03481 Putative GTP-binding controlling metal-binding AK39_5411 PF01300 Telomere recombination AK39_5412 PF02659 Putative manganese efflux pump AK39_5414 PF01613 Flavin reductase like domain AK39_5415 PF07681 DoxX AK39_5416 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK39_5417 PF01451 Low molecular weight phosphotyrosine protein phosphatase AK39_5418 PF02502 Ribose/Galactose Isomerase AK39_5419 PF04260 Protein of unknown function (DUF436) AK39_542 PF03477 ATP cone domain AK39_5420 PF00464 Serine hydroxymethyltransferase AK39_5423 PF03899 ATP synthase I chain AK39_5424 PF00119 ATP synthase A chain AK39_5425 PF00137 ATP synthase subunit C AK39_5426 PF00430 ATP synthase B/B' CF(0) AK39_5427 PF00213 ATP synthase delta (OSCP) subunit AK39_5428 PF00306 ATP synthase alpha/beta chain, C terminal domain AK39_5428 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK39_5428 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK39_5429 PF00231 ATP synthase AK39_543 PF07261 Replication initiation and membrane attachment AK39_5430 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK39_5430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK39_5431 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AK39_5431 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AK39_5434 PF00563 EAL domain AK39_5434 PF03707 Bacterial signalling protein N terminal repeat AK39_5434 PF00990 Diguanylate cyclase, GGDEF domain AK39_5435 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AK39_5436 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AK39_5437 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AK39_5438 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AK39_5439 PF00146 NADH dehydrogenase AK39_544 PF07319 Primosomal protein DnaI N-terminus AK39_544 PF01695 IstB-like ATP binding protein AK39_5441 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AK39_5442 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AK39_5443 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AK39_5443 PF00361 Proton-conducting membrane transporter AK39_5443 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AK39_5444 PF00361 Proton-conducting membrane transporter AK39_5445 PF00361 Proton-conducting membrane transporter AK39_5446 PF06612 Protein of unknown function (DUF1146) AK39_5448 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK39_5449 PF08486 Stage II sporulation protein AK39_545 PF08812 YtxC-like family AK39_5450 PF00005 ABC transporter AK39_5451 PF00072 Response regulator receiver domain AK39_5451 PF04397 LytTr DNA-binding domain AK39_5452 PF00005 ABC transporter AK39_5454 PF01551 Peptidase family M23 AK39_5456 PF12116 Stage III sporulation protein D AK39_546 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK39_546 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK39_546 PF02824 TGS domain AK39_546 PF03129 Anticodon binding domain AK39_5465 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK39_5465 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK39_5465 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK39_5466 PF01061 ABC-2 type transporter AK39_5467 PF00005 ABC transporter AK39_5467 PF08239 Bacterial SH3 domain AK39_5468 PF02350 UDP-N-acetylglucosamine 2-epimerase AK39_5469 PF07977 FabA-like domain AK39_547 PF00707 Translation initiation factor IF-3, C-terminal domain AK39_547 PF05198 Translation initiation factor IF-3, N-terminal domain AK39_5470 PF03816 Cell envelope-related transcriptional attenuator domain AK39_5471 PF16363 GDP-mannose 4,6 dehydratase AK39_5472 PF00072 Response regulator receiver domain AK39_5472 PF00486 Transcriptional regulatory protein, C terminal AK39_5473 PF00989 PAS fold AK39_5473 PF00512 His Kinase A (phospho-acceptor) domain AK39_5473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_5473 PF16736 Single Cache-like AK39_5476 PF07690 Major Facilitator Superfamily AK39_548 PF01632 Ribosomal protein L35 AK39_5480 PF00005 ABC transporter AK39_5481 PF12704 MacB-like periplasmic core domain AK39_5481 PF02687 FtsX-like permease family AK39_5482 PF04893 Yip1 domain AK39_5483 PF04542 Sigma-70 region 2 AK39_5483 PF04545 Sigma-70, region 4 AK39_5489 PF00271 Helicase conserved C-terminal domain AK39_5489 PF12419 SNF2 Helicase protein AK39_5489 PF00176 SNF2 family N-terminal domain AK39_549 PF00453 Ribosomal protein L20 AK39_5490 PF04434 SWIM zinc finger AK39_5495 PF01476 LysM domain AK39_5495 PF06725 3D domain AK39_5496 PF02028 BCCT, betaine/carnitine/choline family transporter AK39_55 PF07690 Major Facilitator Superfamily AK39_5501 PF07662 Na+ dependent nucleoside transporter C-terminus AK39_5501 PF01773 Na+ dependent nucleoside transporter N-terminus AK39_5502 PF00877 NlpC/P60 family AK39_5502 PF01476 LysM domain AK39_5504 PF01063 Amino-transferase class IV AK39_5505 PF00884 Sulfatase AK39_5508 PF09988 Uncharacterized metal-binding protein (DUF2227) AK39_551 PF05343 M42 glutamyl aminopeptidase AK39_5510 PF02652 L-lactate permease AK39_5511 PF01964 Radical SAM ThiC family AK39_5511 PF13667 ThiC-associated domain AK39_5512 PF02040 Arsenical pump membrane protein AK39_5513 PF02322 Cytochrome bd terminal oxidase subunit II AK39_5514 PF01654 Cytochrome bd terminal oxidase subunit I AK39_5518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_5518 PF03466 LysR substrate binding domain AK39_552 PF16859 Tetracyclin repressor-like, C-terminal domain AK39_552 PF00440 Bacterial regulatory proteins, tetR family AK39_5520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_5522 PF00375 Sodium:dicarboxylate symporter family AK39_5523 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK39_5524 PF02378 Phosphotransferase system, EIIC AK39_5525 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AK39_5526 PF02675 S-adenosylmethionine decarboxylase AK39_5528 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK39_5529 PF02378 Phosphotransferase system, EIIC AK39_5530 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AK39_5531 PF11975 Family 4 glycosyl hydrolase C-terminal domain AK39_5531 PF02056 Family 4 glycosyl hydrolase AK39_5532 PF04794 YdjC-like protein AK39_5533 PF02417 Chromate transporter AK39_5535 PF00158 Sigma-54 interaction domain AK39_5535 PF03610 PTS system fructose IIA component AK39_5535 PF00874 PRD domain AK39_5537 PF00953 Glycosyl transferase family 4 AK39_5538 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK39_5538 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK39_5538 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK39_5539 PF02350 UDP-N-acetylglucosamine 2-epimerase AK39_554 PF07690 Major Facilitator Superfamily AK39_5540 PF03816 Cell envelope-related transcriptional attenuator domain AK39_5541 PF09186 Domain of unknown function (DUF1949) AK39_5541 PF01205 Uncharacterized protein family UPF0029 AK39_5542 PF02645 Uncharacterised protein, DegV family COG1307 AK39_5543 PF01638 HxlR-like helix-turn-helix AK39_5544 PF01476 LysM domain AK39_5544 PF00877 NlpC/P60 family AK39_5545 PF04851 Type III restriction enzyme, res subunit AK39_5545 PF00271 Helicase conserved C-terminal domain AK39_5547 PF00313 'Cold-shock' DNA-binding domain AK39_5548 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AK39_5548 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AK39_5549 PF07516 SecA Wing and Scaffold domain AK39_5549 PF07517 SecA DEAD-like domain AK39_5549 PF02810 SEC-C motif AK39_5549 PF01043 SecA preprotein cross-linking domain AK39_5550 PF00472 RF-1 domain AK39_5550 PF03462 PCRF domain AK39_5551 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AK39_5552 PF00005 ABC transporter AK39_5553 PF02687 FtsX-like permease family AK39_5553 PF18075 FtsX extracellular domain AK39_5554 PF01471 Putative peptidoglycan binding domain AK39_5554 PF03572 Peptidase family S41 AK39_5554 PF17820 PDZ domain AK39_5555 PF17820 PDZ domain AK39_5556 PF00664 ABC transporter transmembrane region AK39_5556 PF00005 ABC transporter AK39_5557 PF01906 Putative heavy-metal-binding AK39_5559 PF03358 NADPH-dependent FMN reductase AK39_5560 PF13411 MerR HTH family regulatory protein AK39_5561 PF03466 LysR substrate binding domain AK39_5561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK39_5562 PF03601 Conserved hypothetical protein 698 AK39_5566 PF13411 MerR HTH family regulatory protein AK39_5566 PF07739 TipAS antibiotic-recognition domain AK39_5569 PF12323 Helix-turn-helix domain AK39_5569 PF01385 Probable transposase AK39_5569 PF07282 Putative transposase DNA-binding domain AK39_5570 PF00271 Helicase conserved C-terminal domain AK39_5570 PF17757 UvrB interaction domain AK39_5570 PF12344 Ultra-violet resistance protein B AK39_5570 PF02151 UvrB/uvrC motif AK39_5570 PF04851 Type III restriction enzyme, res subunit AK39_5571 PF17755 UvrA DNA-binding domain AK39_5571 PF17760 UvrA interaction domain AK39_5571 PF00005 ABC transporter AK39_5573 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AK39_5574 PF02603 HPr Serine kinase N terminus AK39_5574 PF07475 HPr Serine kinase C-terminal domain AK39_5575 PF01790 Prolipoprotein diacylglyceryl transferase AK39_5576 PF13419 Haloacid dehalogenase-like hydrolase AK39_5577 PF14602 Hexapeptide repeat of succinyl-transferase AK39_5579 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_5581 PF00293 NUDIX domain AK39_5582 PF03668 P-loop ATPase protein family AK39_5583 PF01933 Uncharacterised protein family UPF0052 AK39_5584 PF02650 WhiA C-terminal HTH domain AK39_5584 PF14527 WhiA LAGLIDADG-like domain AK39_5584 PF10298 WhiA N-terminal LAGLIDADG-like domain AK39_5585 PF00381 PTS HPr component phosphorylation site AK39_5586 PF00574 Clp protease AK39_5587 PF04239 Protein of unknown function (DUF421) AK39_5589 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK39_559 PF01966 HD domain AK39_5590 PF07451 Stage V sporulation protein AD (SpoVAD) AK39_5591 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK39_5595 PF04963 Sigma-54 factor, core binding domain AK39_5595 PF00309 Sigma-54 factor, Activator interacting domain (AID) AK39_5595 PF04552 Sigma-54, DNA binding domain AK39_5597 PF04198 Putative sugar-binding domain AK39_56 PF00248 Aldo/keto reductase family AK39_560 PF14098 Small, acid-soluble spore protein I AK39_5603 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AK39_561 PF00588 SpoU rRNA Methylase family AK39_561 PF08032 RNA 2'-O ribose methyltransferase substrate binding AK39_5617 PF01609 Transposase DDE domain AK39_562 PF01409 tRNA synthetases class II core domain (F) AK39_562 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AK39_5623 PF01609 Transposase DDE domain AK39_5624 PF01609 Transposase DDE domain AK39_5629 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AK39_5629 PF17854 FtsK alpha domain AK39_5629 PF09397 Ftsk gamma domain AK39_5629 PF01580 FtsK/SpoIIIE family AK39_563 PF01588 Putative tRNA binding domain AK39_563 PF03483 B3/4 domain AK39_563 PF03147 Ferredoxin-fold anticodon binding domain AK39_563 PF03484 tRNA synthetase B5 domain AK39_563 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AK39_564 PF00152 tRNA synthetases class II (D, K and N) AK39_564 PF01336 OB-fold nucleic acid binding domain AK39_5649 PF00437 Type II/IV secretion system protein AK39_5677 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) AK39_568 PF11858 Domain of unknown function (DUF3378) AK39_568 PF01351 Ribonuclease HII AK39_5680 PF04235 Protein of unknown function (DUF418) AK39_5686 PF00395 S-layer homology domain AK39_5687 PF01569 PAP2 superfamily AK39_569 PF05164 Cell division protein ZapA AK39_5690 PF00535 Glycosyl transferase family 2 AK39_5691 PF00483 Nucleotidyl transferase AK39_5692 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK39_5692 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK39_5692 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK39_5696 PF00665 Integrase core domain AK39_5696 PF13333 Integrase core domain AK39_5696 PF13276 HTH-like domain AK39_570 PF02674 Colicin V production protein AK39_5703 PF03497 Anthrax toxin LF subunit AK39_5703 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AK39_5704 PF00156 Phosphoribosyl transferase domain AK39_5709 PF08279 HTH domain AK39_5709 PF05043 Mga helix-turn-helix domain AK39_5709 PF00874 PRD domain AK39_571 PF14716 Helix-hairpin-helix domain AK39_571 PF14791 DNA polymerase beta thumb AK39_571 PF02811 PHP domain AK39_5710 PF09385 Histidine kinase N terminal AK39_5714 PF13700 Domain of unknown function (DUF4158) AK39_5714 PF01526 Tn3 transposase DDE domain AK39_5715 PF02796 Helix-turn-helix domain of resolvase AK39_5715 PF00239 Resolvase, N terminal domain AK39_5716 PF03845 Spore germination protein AK39_5717 PF03323 Bacillus/Clostridium GerA spore germination protein AK39_5718 PF05504 Spore germination B3/ GerAC like, C-terminal AK39_572 PF00488 MutS domain V AK39_572 PF01713 Smr domain AK39_5720 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 AK39_5720 PF07691 PA14 domain AK39_5720 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain AK39_5720 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 AK39_5721 PF01022 Bacterial regulatory protein, arsR family AK39_5725 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AK39_5725 PF09156 Anthrax toxin lethal factor, middle domain AK39_5730 PF18277 AbrB C-terminal domain AK39_5730 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK39_5732 PF02899 Phage integrase, N-terminal SAM-like domain AK39_5732 PF00589 Phage integrase family AK39_5739 PF04740 LXG domain of WXG superfamily AK39_5739 PF14436 Bacterial EndoU nuclease AK39_574 PF01479 S4 domain AK39_574 PF00849 RNA pseudouridylate synthase AK39_5741 PF13276 HTH-like domain AK39_5741 PF00665 Integrase core domain AK39_5741 PF13333 Integrase core domain AK39_5745 PF00665 Integrase core domain AK39_5745 PF13333 Integrase core domain AK39_5745 PF13276 HTH-like domain AK39_5746 PF01609 Transposase DDE domain AK39_5747 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AK39_5749 PF00589 Phage integrase family AK39_575 PF05525 Branched-chain amino acid transport protein AK39_5754 PF18801 response regulator aspartate phosphatase H, N terminal AK39_5756 PF17209 Hfq protein AK39_5757 PF01022 Bacterial regulatory protein, arsR family AK39_5758 PF02600 Disulfide bond formation protein DsbB AK39_576 PF05031 Iron Transport-associated domain AK39_5761 PF00565 Staphylococcal nuclease homologue AK39_5763 PF01131 DNA topoisomerase AK39_5763 PF01751 Toprim domain AK39_5763 PF13342 C-terminal repeat of topoisomerase AK39_5769 PF08378 Nuclease-related domain AK39_5777 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AK39_578 PF05031 Iron Transport-associated domain AK39_579 PF01497 Periplasmic binding protein AK39_580 PF01032 FecCD transport family AK39_581 PF00005 ABC transporter AK39_582 PF04203 Sortase domain AK39_583 PF03992 Antibiotic biosynthesis monooxygenase AK39_585 PF10672 S-adenosylmethionine-dependent methyltransferase AK39_585 PF17785 PUA-like domain AK39_586 PF09962 Uncharacterized conserved protein (DUF2196) AK39_588 PF00072 Response regulator receiver domain AK39_588 PF00486 Transcriptional regulatory protein, C terminal AK39_589 PF00512 His Kinase A (phospho-acceptor) domain AK39_589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_590 PF00005 ABC transporter AK39_596 PF05163 DinB family AK39_597 PF01032 FecCD transport family AK39_598 PF01497 Periplasmic binding protein AK39_600 PF13193 AMP-binding enzyme C-terminal domain AK39_600 PF00501 AMP-binding enzyme AK39_601 PF08359 YsiA-like protein, C-terminal region AK39_601 PF00440 Bacterial regulatory proteins, tetR family AK39_602 PF00378 Enoyl-CoA hydratase/isomerase AK39_603 PF01012 Electron transfer flavoprotein domain AK39_604 PF00766 Electron transfer flavoprotein FAD-binding domain AK39_604 PF01012 Electron transfer flavoprotein domain AK39_605 PF00085 Thioredoxin AK39_606 PF01541 GIY-YIG catalytic domain AK39_606 PF08459 UvrC Helix-hairpin-helix N-terminal AK39_606 PF02151 UvrB/uvrC motif AK39_607 PF10702 Protein of unknown function (DUF2507) AK39_608 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AK39_609 PF02910 Fumarate reductase flavoprotein C-term AK39_609 PF00890 FAD binding domain AK39_61 PF13460 NAD(P)H-binding AK39_610 PF13183 4Fe-4S dicluster domain AK39_610 PF13085 2Fe-2S iron-sulfur cluster binding domain AK39_611 PF03061 Thioesterase superfamily AK39_612 PF02557 D-alanyl-D-alanine carboxypeptidase AK39_613 PF01618 MotA/TolQ/ExbB proton channel family AK39_614 PF00691 OmpA family AK39_614 PF13677 Membrane MotB of proton-channel complex MotA/MotB AK39_615 PF00691 OmpA family AK39_615 PF13677 Membrane MotB of proton-channel complex MotA/MotB AK39_616 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AK39_617 PF13732 Domain of unknown function (DUF4162) AK39_617 PF00005 ABC transporter AK39_619 PF02082 Transcriptional regulator AK39_62 PF01235 Sodium:alanine symporter family AK39_620 PF00230 Major intrinsic protein AK39_621 PF13536 Putative multidrug resistance efflux transporter AK39_622 PF07883 Cupin domain AK39_622 PF01381 Helix-turn-helix AK39_623 PF04024 PspC domain AK39_626 PF00072 Response regulator receiver domain AK39_626 PF04397 LytTr DNA-binding domain AK39_627 PF06580 Histidine kinase AK39_627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_627 PF07694 5TMR of 5TMR-LYT AK39_628 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_628 PF00005 ABC transporter AK39_629 PF00005 ABC transporter AK39_629 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK39_63 PF01235 Sodium:alanine symporter family AK39_630 PF00528 Binding-protein-dependent transport system inner membrane component AK39_632 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK39_633 PF07969 Amidohydrolase family AK39_634 PF07969 Amidohydrolase family AK39_636 PF00860 Permease family AK39_637 PF00196 Bacterial regulatory proteins, luxR family AK39_64 PF01773 Na+ dependent nucleoside transporter N-terminus AK39_64 PF07662 Na+ dependent nucleoside transporter C-terminus AK39_640 PF00440 Bacterial regulatory proteins, tetR family AK39_642 PF07690 Major Facilitator Superfamily AK39_643 PF01177 Asp/Glu/Hydantoin racemase AK39_644 PF10646 Sporulation and spore germination AK39_645 PF01138 3' exoribonuclease family, domain 1 AK39_645 PF03725 3' exoribonuclease family, domain 2 AK39_646 PF01725 Ham1 family AK39_647 PF12850 Calcineurin-like phosphoesterase superfamily domain AK39_65 PF07662 Na+ dependent nucleoside transporter C-terminus AK39_65 PF01773 Na+ dependent nucleoside transporter N-terminus AK39_651 PF11724 YvbH-like oligomerisation region AK39_651 PF08000 Bacterial PH domain AK39_655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AK39_655 PF05698 Bacterial trigger factor protein (TF) C-terminus AK39_655 PF05697 Bacterial trigger factor protein (TF) AK39_656 PF07724 AAA domain (Cdc48 subfamily) AK39_656 PF10431 C-terminal, D2-small domain, of ClpB protein AK39_656 PF06689 ClpX C4-type zinc finger AK39_657 PF05362 Lon protease (S16) C-terminal proteolytic domain AK39_657 PF00004 ATPase family associated with various cellular activities (AAA) AK39_658 PF00004 ATPase family associated with various cellular activities (AAA) AK39_658 PF05362 Lon protease (S16) C-terminal proteolytic domain AK39_658 PF02190 ATP-dependent protease La (LON) substrate-binding domain AK39_659 PF01926 50S ribosome-binding GTPase AK39_660 PF02566 OsmC-like protein AK39_661 PF01047 MarR family AK39_662 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AK39_662 PF01488 Shikimate / quinate 5-dehydrogenase AK39_662 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AK39_663 PF01578 Cytochrome C assembly protein AK39_664 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AK39_664 PF03900 Porphobilinogen deaminase, C-terminal domain AK39_665 PF02602 Uroporphyrinogen-III synthase HemD AK39_666 PF00490 Delta-aminolevulinic acid dehydratase AK39_667 PF00202 Aminotransferase class-III AK39_668 PF01476 LysM domain AK39_67 PF04235 Protein of unknown function (DUF418) AK39_670 PF10458 Valyl tRNA synthetase tRNA binding arm AK39_670 PF00133 tRNA synthetases class I (I, L, M and V) AK39_670 PF08264 Anticodon-binding domain of tRNA AK39_671 PF08245 Mur ligase middle domain AK39_671 PF02875 Mur ligase family, glutamate ligase domain AK39_673 PF02545 Maf-like protein AK39_674 PF04002 RadC-like JAB domain AK39_676 PF04085 rod shape-determining protein MreC AK39_678 PF03775 Septum formation inhibitor MinC, C-terminal domain AK39_679 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AK39_68 PF00210 Ferritin-like domain AK39_680 PF01551 Peptidase family M23 AK39_681 PF02163 Peptidase family M50 AK39_682 PF10150 Ribonuclease E/G family AK39_682 PF00575 S1 RNA binding domain AK39_683 PF00829 Ribosomal prokaryotic L21 protein AK39_684 PF04327 Cysteine protease Prp AK39_685 PF01016 Ribosomal L27 protein AK39_686 PF14682 Sporulation initiation phospho-transferase B, C-terminal AK39_686 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK39_687 PF09269 Domain of unknown function (DUF1967) AK39_687 PF01018 GTP1/OBG AK39_687 PF01926 50S ribosome-binding GTPase AK39_688 PF00072 Response regulator receiver domain AK39_688 PF00486 Transcriptional regulatory protein, C terminal AK39_690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_691 PF00005 ABC transporter AK39_692 PF02687 FtsX-like permease family AK39_693 PF02687 FtsX-like permease family AK39_694 PF01842 ACT domain AK39_694 PF00800 Prephenate dehydratase AK39_695 PF03473 MOSC domain AK39_695 PF03475 3-alpha domain AK39_696 PF02829 3H domain AK39_696 PF08279 HTH domain AK39_697 PF00266 Aminotransferase class-V AK39_698 PF02910 Fumarate reductase flavoprotein C-term AK39_698 PF00890 FAD binding domain AK39_699 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AK39_699 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AK39_70 PF03641 Possible lysine decarboxylase AK39_700 PF02445 Quinolinate synthetase A protein AK39_701 PF01476 LysM domain AK39_704 PF01022 Bacterial regulatory protein, arsR family AK39_705 PF00892 EamA-like transporter family AK39_706 PF00892 EamA-like transporter family AK39_708 PF01497 Periplasmic binding protein AK39_709 PF07499 RuvA, C-terminal domain AK39_709 PF01330 RuvA N terminal domain AK39_710 PF17864 RuvB AAA lid domain AK39_710 PF05491 RuvB C-terminal winged helix domain AK39_710 PF05496 Holliday junction DNA helicase RuvB P-loop domain AK39_711 PF11146 Protein of unknown function (DUF2905) AK39_712 PF02547 Queuosine biosynthesis protein AK39_713 PF01702 Queuine tRNA-ribosyltransferase AK39_714 PF02699 Preprotein translocase subunit AK39_716 PF04239 Protein of unknown function (DUF421) AK39_717 PF14667 Polysaccharide biosynthesis C-terminal domain AK39_717 PF01943 Polysaccharide biosynthesis protein AK39_718 PF13797 Post-transcriptional regulator AK39_719 PF07549 SecD/SecF GG Motif AK39_719 PF02355 Protein export membrane protein AK39_720 PF16916 Dimerisation domain of Zinc Transporter AK39_720 PF01545 Cation efflux family AK39_721 PF02272 DHHA1 domain AK39_721 PF17768 RecJ OB domain AK39_721 PF01368 DHH family AK39_721 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AK39_722 PF00156 Phosphoribosyl transferase domain AK39_723 PF13291 ACT domain AK39_723 PF02824 TGS domain AK39_723 PF04607 Region found in RelA / SpoT proteins AK39_724 PF02580 D-Tyr-tRNA(Tyr) deacylase AK39_726 PF13393 Histidyl-tRNA synthetase AK39_726 PF03129 Anticodon binding domain AK39_727 PF00152 tRNA synthetases class II (D, K and N) AK39_727 PF01336 OB-fold nucleic acid binding domain AK39_727 PF02938 GAD domain AK39_728 PF00899 ThiF family AK39_73 PF00210 Ferritin-like domain AK39_730 PF16193 AAA C-terminal domain AK39_730 PF12002 MgsA AAA+ ATPase C terminal AK39_730 PF05496 Holliday junction DNA helicase RuvB P-loop domain AK39_731 PF02082 Transcriptional regulator AK39_732 PF00266 Aminotransferase class-V AK39_735 PF13538 UvrD-like helicase C-terminal domain AK39_735 PF14490 Helix-hairpin-helix containing domain AK39_735 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AK39_739 PF01594 AI-2E family transporter AK39_74 PF01235 Sodium:alanine symporter family AK39_741 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK39_741 PF01411 tRNA synthetases class II (A) AK39_741 PF02272 DHHA1 domain AK39_742 PF06135 IreB regulatory phosphoprotein AK39_743 PF03652 Holliday junction resolvase AK39_744 PF06949 Protein of unknown function (DUF1292) AK39_745 PF02618 YceG-like family AK39_749 PF00485 Phosphoribulokinase / Uridine kinase family AK39_75 PF02080 TrkA-C domain AK39_750 PF03449 Transcription elongation factor, N-terminal AK39_750 PF01272 Transcription elongation factor, GreA/GreB, C-term AK39_751 PF03717 Penicillin-binding Protein dimerisation domain AK39_751 PF00905 Penicillin binding protein transpeptidase domain AK39_754 PF08241 Methyltransferase domain AK39_755 PF01048 Phosphorylase superfamily AK39_756 PF00291 Pyridoxal-phosphate dependent enzyme AK39_757 PF01053 Cys/Met metabolism PLP-dependent enzyme AK39_758 PF00465 Iron-containing alcohol dehydrogenase AK39_758 PF00171 Aldehyde dehydrogenase family AK39_759 PF14143 YrhC-like protein AK39_76 PF00999 Sodium/hydrogen exchanger family AK39_760 PF01497 Periplasmic binding protein AK39_761 PF01032 FecCD transport family AK39_762 PF00005 ABC transporter AK39_768 PF07681 DoxX AK39_769 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK39_772 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AK39_773 PF13860 FlgD Ig-like domain AK39_773 PF00082 Subtilase family AK39_773 PF02225 PA domain AK39_773 PF05922 Peptidase inhibitor I9 AK39_78 PF01047 MarR family AK39_780 PF08386 TAP-like protein AK39_780 PF00561 alpha/beta hydrolase fold AK39_782 PF00245 Alkaline phosphatase AK39_784 PF04607 Region found in RelA / SpoT proteins AK39_785 PF00881 Nitroreductase family AK39_786 PF00471 Ribosomal protein L33 AK39_787 PF16244 Domain of unknown function (DUF4901) AK39_79 PF02678 Pirin AK39_79 PF17954 Quercetinase C-terminal cupin domain AK39_790 PF04545 Sigma-70, region 4 AK39_790 PF04542 Sigma-70 region 2 AK39_791 PF02666 Phosphatidylserine decarboxylase AK39_794 PF01926 50S ribosome-binding GTPase AK39_795 PF01488 Shikimate / quinate 5-dehydrogenase AK39_795 PF08501 Shikimate dehydrogenase substrate binding domain AK39_795 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AK39_796 PF01985 CRS1 / YhbY (CRM) domain AK39_797 PF01467 Cytidylyltransferase-like AK39_798 PF01966 HD domain AK39_80 PF03413 Peptidase propeptide and YPEB domain AK39_80 PF07504 Fungalysin/Thermolysin Propeptide Motif AK39_80 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK39_80 PF01447 Thermolysin metallopeptidase, catalytic domain AK39_800 PF13649 Methyltransferase domain AK39_801 PF03807 NADP oxidoreductase coenzyme F420-dependent AK39_801 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK39_802 PF10531 SLBB domain AK39_803 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK39_806 PF14141 YqzM-like protein AK39_807 PF06144 DNA polymerase III, delta subunit AK39_808 PF01649 Ribosomal protein S20 AK39_809 PF03418 Germination protease AK39_81 PF01883 Iron-sulfur cluster assembly protein AK39_811 PF00009 Elongation factor Tu GTP binding domain AK39_811 PF03144 Elongation factor Tu domain 2 AK39_811 PF06421 GTP-binding protein LepA C-terminus AK39_811 PF00679 Elongation factor G C-terminus AK39_812 PF01638 HxlR-like helix-turn-helix AK39_813 PF04055 Radical SAM superfamily AK39_813 PF06969 HemN C-terminal domain AK39_814 PF01628 HrcA protein C terminal domain AK39_815 PF01025 GrpE AK39_816 PF00012 Hsp70 protein AK39_817 PF01556 DnaJ C terminal domain AK39_817 PF00226 DnaJ domain AK39_817 PF00684 DnaJ central domain AK39_819 PF04452 RNA methyltransferase AK39_82 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK39_82 PF02743 Cache domain AK39_82 PF00672 HAMP domain AK39_820 PF00919 Uncharacterized protein family UPF0004 AK39_820 PF01938 TRAM domain AK39_820 PF04055 Radical SAM superfamily AK39_821 PF01165 Ribosomal protein S21 AK39_822 PF09424 Yqey-like protein AK39_823 PF07873 YabP family AK39_824 PF06898 Putative stage IV sporulation protein YqfD AK39_825 PF02562 PhoH-like protein AK39_826 PF07698 7TM receptor with intracellular HD hydrolase AK39_826 PF07697 7TM-HD extracellular AK39_826 PF01966 HD domain AK39_827 PF02130 Uncharacterized protein family UPF0054 AK39_828 PF01219 Prokaryotic diacylglycerol kinase AK39_829 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK39_830 PF01926 50S ribosome-binding GTPase AK39_830 PF07650 KH domain AK39_832 PF02565 Recombination protein O C terminal AK39_832 PF11967 Recombination protein O N terminal AK39_833 PF00571 CBS domain AK39_833 PF08279 HTH domain AK39_834 PF03618 Kinase/pyrophosphorylase AK39_835 PF01807 CHC2 zinc finger AK39_835 PF08275 DNA primase catalytic core, N-terminal domain AK39_835 PF10410 DnaB-helicase binding domain of primase AK39_836 PF00140 Sigma-70 factor, region 1.2 AK39_836 PF03979 Sigma-70 factor, region 1.1 AK39_836 PF04542 Sigma-70 region 2 AK39_836 PF04539 Sigma-70 region 3 AK39_836 PF04545 Sigma-70, region 4 AK39_837 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AK39_838 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AK39_839 PF01784 NIF3 (NGG1p interacting factor 3) AK39_84 PF09334 tRNA synthetases class I (M) AK39_84 PF08264 Anticodon-binding domain of tRNA AK39_840 PF02401 LytB protein AK39_842 PF00270 DEAD/DEAH box helicase AK39_842 PF00271 Helicase conserved C-terminal domain AK39_843 PF01261 Xylose isomerase-like TIM barrel AK39_844 PF11116 Protein of unknown function (DUF2624) AK39_845 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_845 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_846 PF00005 ABC transporter AK39_847 PF00950 ABC 3 transport family AK39_848 PF01475 Ferric uptake regulator family AK39_849 PF04551 GcpE protein AK39_853 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK39_853 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK39_854 PF07690 Major Facilitator Superfamily AK39_856 PF12849 PBP superfamily domain AK39_857 PF00528 Binding-protein-dependent transport system inner membrane component AK39_858 PF00528 Binding-protein-dependent transport system inner membrane component AK39_859 PF00005 ABC transporter AK39_86 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK39_86 PF00512 His Kinase A (phospho-acceptor) domain AK39_86 PF00989 PAS fold AK39_86 PF16736 Single Cache-like AK39_860 PF01895 PhoU domain AK39_861 PF00483 Nucleotidyl transferase AK39_862 PF00471 Ribosomal protein L33 AK39_863 PF01812 5-formyltetrahydrofolate cyclo-ligase family AK39_864 PF06014 Bacterial protein of unknown function (DUF910) AK39_865 PF00480 ROK family AK39_866 PF10958 Protein of unknown function (DUF2759) AK39_867 PF00753 Metallo-beta-lactamase superfamily AK39_869 PF01022 Bacterial regulatory protein, arsR family AK39_87 PF00072 Response regulator receiver domain AK39_87 PF00486 Transcriptional regulatory protein, C terminal AK39_871 PF01053 Cys/Met metabolism PLP-dependent enzyme AK39_872 PF01053 Cys/Met metabolism PLP-dependent enzyme AK39_873 PF02219 Methylenetetrahydrofolate reductase AK39_873 PF02574 Homocysteine S-methyltransferase AK39_874 PF02310 B12 binding domain AK39_874 PF02607 B12 binding domain AK39_874 PF02965 Vitamin B12 dependent methionine synthase, activation domain AK39_874 PF00809 Pterin binding enzyme AK39_874 PF02574 Homocysteine S-methyltransferase AK39_875 PF03033 Glycosyltransferase family 28 N-terminal domain AK39_875 PF04101 Glycosyltransferase family 28 C-terminal domain AK39_88 PF17969 L,D-transpeptidase C-terminal domain AK39_88 PF03734 L,D-transpeptidase catalytic domain AK39_882 PF00375 Sodium:dicarboxylate symporter family AK39_883 PF11117 Protein of unknown function (DUF2626) AK39_885 PF00437 Type II/IV secretion system protein AK39_886 PF00482 Type II secretion system (T2SS), protein F AK39_888 PF07963 Prokaryotic N-terminal methylation motif AK39_893 PF01202 Shikimate kinase AK39_894 PF14038 YqzE-like protein AK39_898 PF11079 Bacterial protein YqhG of unknown function AK39_899 PF00271 Helicase conserved C-terminal domain AK39_899 PF00176 SNF2 family N-terminal domain AK39_90 PF09335 SNARE associated Golgi protein AK39_900 PF01571 Aminomethyltransferase folate-binding domain AK39_900 PF08669 Glycine cleavage T-protein C-terminal barrel domain AK39_901 PF02347 Glycine cleavage system P-protein AK39_902 PF02347 Glycine cleavage system P-protein AK39_905 PF00392 Bacterial regulatory proteins, gntR family AK39_906 PF00005 ABC transporter AK39_913 PF00893 Small Multidrug Resistance protein AK39_914 PF00893 Small Multidrug Resistance protein AK39_916 PF00356 Bacterial regulatory proteins, lacI family AK39_916 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK39_917 PF00581 Rhodanese-like domain AK39_918 PF03099 Biotin/lipoate A/B protein ligase family AK39_921 PF02742 Iron dependent repressor, metal binding and dimerisation domain AK39_921 PF01325 Iron dependent repressor, N-terminal DNA binding domain AK39_923 PF13419 Haloacid dehalogenase-like hydrolase AK39_924 PF07136 Protein of unknown function (DUF1385) AK39_925 PF11085 Conserved membrane protein YqhR AK39_926 PF01220 Dehydroquinase class II AK39_927 PF01321 Creatinase/Prolidase N-terminal domain AK39_927 PF00557 Metallopeptidase family M24 AK39_928 PF09285 Elongation factor P, C-terminal AK39_928 PF01132 Elongation factor P (EF-P) OB domain AK39_928 PF08207 Elongation factor P (EF-P) KOW-like domain AK39_933 PF09548 Stage III sporulation protein AB (spore_III_AB) AK39_934 PF06686 Stage III sporulation protein AC/AD protein family AK39_935 PF06686 Stage III sporulation protein AC/AD protein family AK39_936 PF09546 Stage III sporulation protein AE (spore_III_AE) AK39_937 PF09581 Stage III sporulation protein AF (Spore_III_AF) AK39_939 PF12685 SpoIIIAH-like protein AK39_941 PF00364 Biotin-requiring enzyme AK39_942 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK39_942 PF02785 Biotin carboxylase C-terminal domain AK39_942 PF00289 Biotin carboxylase, N-terminal domain AK39_943 PF03780 Asp23 family, cell envelope-related function AK39_944 PF01029 NusB family AK39_945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AK39_945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AK39_946 PF13742 OB-fold nucleic acid binding domain AK39_946 PF02601 Exonuclease VII, large subunit AK39_947 PF02609 Exonuclease VII small subunit AK39_948 PF00348 Polyprenyl synthetase AK39_949 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AK39_949 PF02779 Transketolase, pyrimidine binding domain AK39_949 PF02780 Transketolase, C-terminal domain AK39_950 PF01728 FtsJ-like methyltransferase AK39_950 PF01479 S4 domain AK39_951 PF01316 Arginine repressor, DNA binding domain AK39_951 PF02863 Arginine repressor, C-terminal domain AK39_952 PF13476 AAA domain AK39_953 PF05580 SpoIVB peptidase S55 AK39_953 PF17820 PDZ domain AK39_954 PF08769 Sporulation initiation factor Spo0A C terminal AK39_954 PF00072 Response regulator receiver domain AK39_956 PF14174 YycC-like protein AK39_957 PF03009 Glycerophosphoryl diester phosphodiesterase family AK39_959 PF00158 Sigma-54 interaction domain AK39_959 PF00989 PAS fold AK39_959 PF02954 Bacterial regulatory protein, Fis family AK39_960 PF01515 Phosphate acetyl/butaryl transferase AK39_961 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AK39_961 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK39_962 PF00871 Acetokinase family AK39_963 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK39_963 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK39_964 PF00676 Dehydrogenase E1 component AK39_965 PF02779 Transketolase, pyrimidine binding domain AK39_965 PF02780 Transketolase, C-terminal domain AK39_966 PF02817 e3 binding domain AK39_966 PF00364 Biotin-requiring enzyme AK39_966 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK39_967 PF01098 Cell cycle protein AK39_968 PF00293 NUDIX domain AK39_968 PF09297 NADH pyrophosphatase zinc ribbon domain AK39_969 PF11208 Protein of unknown function (DUF2992) AK39_97 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK39_97 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK39_970 PF06491 Disulphide isomerase AK39_971 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK39_972 PF00528 Binding-protein-dependent transport system inner membrane component AK39_973 PF00005 ABC transporter AK39_974 PF06081 Aromatic acid exporter family member 1 AK39_974 PF11728 Putative aromatic acid exporter C-terminal domain AK39_975 PF03734 L,D-transpeptidase catalytic domain AK39_977 PF13302 Acetyltransferase (GNAT) domain AK39_978 PF01546 Peptidase family M20/M25/M40 AK39_978 PF07687 Peptidase dimerisation domain AK39_980 PF11798 IMS family HHH motif AK39_980 PF11799 impB/mucB/samB family C-terminal domain AK39_980 PF00817 impB/mucB/samB family AK39_982 PF12706 Beta-lactamase superfamily domain AK39_982 PF00753 Metallo-beta-lactamase superfamily AK39_983 PF01842 ACT domain AK39_983 PF03315 Serine dehydratase beta chain AK39_984 PF03313 Serine dehydratase alpha chain AK39_985 PF03807 NADP oxidoreductase coenzyme F420-dependent AK39_985 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK39_987 PF00753 Metallo-beta-lactamase superfamily AK39_988 PF00106 short chain dehydrogenase AK39_99 PF02096 60Kd inner membrane protein AK39_990 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK39_990 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK39_991 PF01960 ArgJ family AK39_992 PF00696 Amino acid kinase family AK39_993 PF00202 Aminotransferase class-III AK39_994 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AK39_994 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AK39_997 PF13404 AsnC-type helix-turn-helix domain AK39_997 PF01037 Lrp/AsnC ligand binding domain AK39_999 PF02872 5'-nucleotidase, C-terminal domain AK39_999 PF00149 Calcineurin-like phosphoesterase