AK39_1007 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_1007 SM00876 Biotin and Thiamin Synthesis associated domain AK39_1013 SM00704 CDGSH-type zinc finger. Function unknown. AK39_1017 SM00354 helix_turn _helix lactose operon repressor AK39_1036 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AK39_1040 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_1043 SM00382 ATPases associated with a variety of cellular activities AK39_1044 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_1045 SM00936 Penicillin-binding protein 5, C-terminal domain AK39_1047 SM00387 Histidine kinase-like ATPases AK39_106 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_106 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_1066 SM00849 Metallo-beta-lactamase superfamily AK39_1069 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_1069 SM00866 AK39_1069 AK39_1071 SM01061 CAT RNA binding domain AK39_1078 SM00267 diguanylate cyclase AK39_1084 SM01007 Class II Aldolase and Adducin N-terminal domain AK39_1101 SM00382 ATPases associated with a variety of cellular activities AK39_1108 SM00382 ATPases associated with a variety of cellular activities AK39_1109 SM00642 Alpha-amylase domain AK39_1110 SM00642 Alpha-amylase domain AK39_1114 SM00354 helix_turn _helix lactose operon repressor AK39_1117 SM00387 Histidine kinase-like ATPases AK39_1117 SM00388 His Kinase A (phosphoacceptor) domain AK39_1126 SM00267 diguanylate cyclase AK39_1134 SM00052 Putative diguanylate phosphodiesterase AK39_1147 SM00849 Metallo-beta-lactamase superfamily AK39_115 SM00849 Metallo-beta-lactamase superfamily AK39_1153 SM00861 Transketolase, pyrimidine binding domain AK39_1169 SM00838 Elongation factor G C-terminus AK39_1174 SM00670 Large family of predicted nucleotide-binding domains AK39_1178 SM00878 Biotin carboxylase C-terminal domain AK39_1191 SM00855 Phosphoglycerate mutase family AK39_1200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK39_1206 SM00530 Helix-turn-helix XRE-family like proteins AK39_1210 SM00530 Helix-turn-helix XRE-family like proteins AK39_1211 SM00530 Helix-turn-helix XRE-family like proteins AK39_1216 SM00382 ATPases associated with a variety of cellular activities AK39_1230 SM00530 Helix-turn-helix XRE-family like proteins AK39_1239 SM00507 HNH nucleases AK39_1261 SM00644 AK39_1261 AK39_1264 SM00530 Helix-turn-helix XRE-family like proteins AK39_1272 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains AK39_1278 SM00740 AK39_1278 AK39_1279 SM00740 AK39_1279 AK39_1287 SM00842 Cell division protein FtsA AK39_1288 SM00864 Tubulin/FtsZ family, GTPase domain AK39_1288 SM00865 Tubulin/FtsZ family, C-terminal domain AK39_1297 SM00363 S4 RNA-binding domain AK39_1302 SM00363 S4 RNA-binding domain AK39_1307 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AK39_1308 SM00851 MGS-like domain AK39_1308 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AK39_1308 SM01209 AK39_1308 AK39_1311 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AK39_132 SM00493 AK39_132 AK39_1320 SM00831 Cation transporter/ATPase, N-terminus AK39_1323 SM00072 Guanylate kinase homologues. AK39_1324 SM01409 AK39_1324 AK39_1326 SM00487 DEAD-like helicases superfamily AK39_1326 SM00490 helicase superfamily c-terminal domain AK39_1331 SM00331 Sigma factor PP2C-like phosphatases AK39_1331 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AK39_1332 SM00220 Serine/Threonine protein kinases, catalytic domain AK39_1332 SM00740 AK39_1332 AK39_1335 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AK39_1338 SM01120 AK39_1338 AK39_1338 SM01121 AK39_1338 AK39_1339 SM00487 DEAD-like helicases superfamily AK39_1339 SM00490 helicase superfamily c-terminal domain AK39_1342 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AK39_1343 SM00822 AK39_1343 AK39_1345 SM00358 Double-stranded RNA binding motif AK39_1345 SM00535 Ribonuclease III family AK39_1346 SM00968 SMC proteins Flexible Hinge Domain AK39_1347 SM00382 ATPases associated with a variety of cellular activities AK39_1347 SM00962 SRP54-type protein, GTPase domain AK39_1347 SM00963 SRP54-type protein, helical bundle domain AK39_1349 SM00382 ATPases associated with a variety of cellular activities AK39_1349 SM00962 SRP54-type protein, GTPase domain AK39_1349 SM00963 SRP54-type protein, helical bundle domain AK39_135 SM00382 ATPases associated with a variety of cellular activities AK39_135 SM00930 AK39_135 AK39_1359 SM00881 CoA binding domain AK39_1361 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK39_1361 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK39_1361 SM00493 AK39_1361 AK39_1365 SM00382 ATPases associated with a variety of cellular activities AK39_1365 SM01086 C-terminal, D2-small domain, of ClpB protein AK39_1374 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK39_1376 SM00479 AK39_1376 AK39_1376 SM00481 DNA polymerase alpha chain like domain AK39_1378 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_1378 SM00322 K homology RNA-binding domain AK39_1385 SM00904 Riboflavin kinase AK39_1386 SM01387 AK39_1386 AK39_1387 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_1387 SM00322 K homology RNA-binding domain AK39_139 SM00382 ATPases associated with a variety of cellular activities AK39_1393 SM00859 Semialdehyde dehydrogenase, NAD binding domain AK39_1395 SM01130 AK39_1395 AK39_1396 SM00849 Metallo-beta-lactamase superfamily AK39_1399 SM00382 ATPases associated with a variety of cellular activities AK39_1399 SM00843 AK39_1399 AK39_1400 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_1400 SM00866 AK39_1400 AK39_1402 SM00382 ATPases associated with a variety of cellular activities AK39_1413 SM00852 Probable molybdopterin binding domain AK39_1414 SM00382 ATPases associated with a variety of cellular activities AK39_1416 SM00322 K homology RNA-binding domain AK39_1416 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_1422 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_1425 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AK39_1425 SM00534 ATPase domain of DNA mismatch repair MUTS family AK39_1426 SM00853 MutL C terminal dimerisation domain AK39_1426 SM01340 AK39_1426 AK39_1427 SM00382 ATPases associated with a variety of cellular activities AK39_1430 SM00448 cheY-homologous receiver domain AK39_1430 SM00862 Transcriptional regulatory protein, C terminal AK39_1431 SM00387 Histidine kinase-like ATPases AK39_1431 SM00388 His Kinase A (phosphoacceptor) domain AK39_1437 SM00257 Lysin motif AK39_1439 SM00148 Phospholipase C, catalytic domain (part); domain X AK39_1443 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_1448 SM00052 Putative diguanylate phosphodiesterase AK39_1448 SM00091 PAS domain AK39_1448 SM00267 diguanylate cyclase AK39_1455 SM00478 endonuclease III AK39_1457 SM00342 helix_turn_helix, arabinose operon control protein AK39_1463 SM00382 ATPases associated with a variety of cellular activities AK39_1469 SM00411 bacterial (prokaryotic) histone like domain AK39_1473 SM00636 AK39_1473 AK39_1480 SM00420 helix_turn_helix, Deoxyribose operon repressor AK39_1480 SM01134 AK39_1480 AK39_1483 SM00287 Bacterial SH3 domain homologues AK39_1490 SM00382 ATPases associated with a variety of cellular activities AK39_1495 SM00422 helix_turn_helix, mercury resistance AK39_1496 SM01230 AK39_1496 AK39_150 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_1501 SM00530 Helix-turn-helix XRE-family like proteins AK39_1502 SM00530 Helix-turn-helix XRE-family like proteins AK39_1512 SM00382 ATPases associated with a variety of cellular activities AK39_152 SM00855 Phosphoglycerate mutase family AK39_1527 SM00530 Helix-turn-helix XRE-family like proteins AK39_155 SM00422 helix_turn_helix, mercury resistance AK39_1558 SM00287 Bacterial SH3 domain homologues AK39_1558 SM00644 AK39_1558 AK39_1564 SM00028 Tetratricopeptide repeats AK39_1570 SM00857 Resolvase, N terminal domain AK39_1574 SM00062 Bacterial periplasmic substrate-binding proteins AK39_1575 SM00382 ATPases associated with a variety of cellular activities AK39_1579 SM00861 Transketolase, pyrimidine binding domain AK39_1582 SM00382 ATPases associated with a variety of cellular activities AK39_1583 SM00382 ATPases associated with a variety of cellular activities AK39_1586 SM00644 AK39_1586 AK39_1612 SM01058 CarD-like/TRCF domain AK39_1618 SM00091 PAS domain AK39_1618 SM00387 Histidine kinase-like ATPases AK39_1618 SM00388 His Kinase A (phosphoacceptor) domain AK39_162 SM00420 helix_turn_helix, Deoxyribose operon repressor AK39_1621 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AK39_1622 SM00644 AK39_1622 AK39_1622 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AK39_1635 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK39_1643 SM00382 ATPases associated with a variety of cellular activities AK39_1646 SM00479 AK39_1646 AK39_1650 SM00257 Lysin motif AK39_1650 SM00636 AK39_1650 AK39_1653 SM01207 AK39_1653 AK39_1656 SM00448 cheY-homologous receiver domain AK39_1656 SM00862 Transcriptional regulatory protein, C terminal AK39_1657 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK39_1658 SM00881 CoA binding domain AK39_1659 SM00387 Histidine kinase-like ATPases AK39_1659 SM00433 TopoisomeraseII AK39_1660 SM00434 DNA Topoisomerase IV AK39_1663 SM00382 ATPases associated with a variety of cellular activities AK39_1684 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AK39_1684 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK39_1688 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_1691 SM00852 Probable molybdopterin binding domain AK39_1713 SM01022 AK39_1713 AK39_1718 SM00357 Cold shock protein domain AK39_1719 SM00479 AK39_1719 AK39_1728 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AK39_1743 SM00028 Tetratricopeptide repeats AK39_1745 SM00829 Enoylreductase AK39_1746 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_175 SM00860 SMI1 / KNR4 family AK39_1759 SM00642 Alpha-amylase domain AK39_1761 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AK39_1761 SM00534 ATPase domain of DNA mismatch repair MUTS family AK39_1763 SM00855 Phosphoglycerate mutase family AK39_1764 SM00829 Enoylreductase AK39_1789 SM00829 Enoylreductase AK39_1790 SM00849 Metallo-beta-lactamase superfamily AK39_180 SM00382 ATPases associated with a variety of cellular activities AK39_1803 SM00641 Glycosyl hydrolases family 25 AK39_1804 SM00849 Metallo-beta-lactamase superfamily AK39_1810 SM00382 ATPases associated with a variety of cellular activities AK39_1814 SM00871 Bacterial transcription activator, effector binding domain AK39_1822 SM00636 AK39_1822 AK39_1823 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_1824 SM00248 ankyrin repeats AK39_1837 SM00849 Metallo-beta-lactamase superfamily AK39_1845 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_1845 SM00866 AK39_1845 AK39_1851 SM00914 AK39_1851 AK39_1860 SM01276 AK39_1860 AK39_1863 SM00829 Enoylreductase AK39_1866 SM00829 Enoylreductase AK39_1869 SM00861 Transketolase, pyrimidine binding domain AK39_1870 SM01350 AK39_1870 AK39_1878 SM00422 helix_turn_helix, mercury resistance AK39_1879 SM01091 Transporter associated domain AK39_1884 SM00028 Tetratricopeptide repeats AK39_1895 SM00382 ATPases associated with a variety of cellular activities AK39_1898 SM01266 AK39_1898 AK39_190 SM00871 Bacterial transcription activator, effector binding domain AK39_1910 SM00530 Helix-turn-helix XRE-family like proteins AK39_1913 SM00382 ATPases associated with a variety of cellular activities AK39_1925 SM01207 AK39_1925 AK39_1926 SM00530 Helix-turn-helix XRE-family like proteins AK39_1935 SM00382 ATPases associated with a variety of cellular activities AK39_1948 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_1950 SM00382 ATPases associated with a variety of cellular activities AK39_1955 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_1965 SM00287 Bacterial SH3 domain homologues AK39_1968 SM00342 helix_turn_helix, arabinose operon control protein AK39_1980 SM00344 helix_turn_helix ASNC type AK39_1988 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_1994 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AK39_1999 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_1999 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_1999 SM00319 Homologues of the ligand binding domain of Tar AK39_2006 SM00028 Tetratricopeptide repeats AK39_2007 SM00354 helix_turn _helix lactose operon repressor AK39_2026 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_2028 SM00448 cheY-homologous receiver domain AK39_2028 SM00862 Transcriptional regulatory protein, C terminal AK39_2029 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_2029 SM00387 Histidine kinase-like ATPases AK39_2029 SM00388 His Kinase A (phosphoacceptor) domain AK39_2031 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_2033 SM00382 ATPases associated with a variety of cellular activities AK39_2043 SM00530 Helix-turn-helix XRE-family like proteins AK39_2054 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_2054 SM00387 Histidine kinase-like ATPases AK39_2054 SM00388 His Kinase A (phosphoacceptor) domain AK39_2055 SM00448 cheY-homologous receiver domain AK39_2055 SM00862 Transcriptional regulatory protein, C terminal AK39_2062 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_2075 SM00344 helix_turn_helix ASNC type AK39_2079 SM00028 Tetratricopeptide repeats AK39_2082 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_2085 SM00226 Low molecular weight phosphatase family AK39_209 SM00479 AK39_209 AK39_2090 SM00382 ATPases associated with a variety of cellular activities AK39_210 SM01298 AK39_210 AK39_2117 SM01060 AK39_2117 AK39_2128 SM00387 Histidine kinase-like ATPases AK39_2129 SM00448 cheY-homologous receiver domain AK39_2136 SM00919 Malic enzyme, NAD binding domain AK39_2136 SM01274 AK39_2136 AK39_2143 SM00530 Helix-turn-helix XRE-family like proteins AK39_2144 SM00870 AK39_2144 AK39_2163 SM00849 Metallo-beta-lactamase superfamily AK39_217 SM00344 helix_turn_helix ASNC type AK39_2176 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_2180 SM00346 helix_turn_helix isocitrate lyase regulation AK39_2181 SM00796 Allophanate hydrolase subunit 1 AK39_2182 SM00797 Allophanate hydrolase subunit 2 AK39_219 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_2209 SM00448 cheY-homologous receiver domain AK39_2209 SM00862 Transcriptional regulatory protein, C terminal AK39_2210 SM00387 Histidine kinase-like ATPases AK39_2210 SM00388 His Kinase A (phosphoacceptor) domain AK39_2214 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_2219 SM00342 helix_turn_helix, arabinose operon control protein AK39_2219 SM00871 Bacterial transcription activator, effector binding domain AK39_2224 SM00382 ATPases associated with a variety of cellular activities AK39_2226 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_2227 SM00382 ATPases associated with a variety of cellular activities AK39_2232 SM00889 Elongation factor G, domain IV AK39_2233 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_2244 SM01060 AK39_2244 AK39_2264 SM00850 LytTr DNA-binding domain AK39_2269 SM00530 Helix-turn-helix XRE-family like proteins AK39_2271 SM00098 Alkaline phosphatase homologues AK39_2275 SM00346 helix_turn_helix isocitrate lyase regulation AK39_2278 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AK39_2282 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_2288 SM01133 AK39_2288 AK39_2293 SM00382 ATPases associated with a variety of cellular activities AK39_2304 SM00287 Bacterial SH3 domain homologues AK39_2312 SM00830 Chorismate mutase type II AK39_2322 SM00382 ATPases associated with a variety of cellular activities AK39_2340 SM00028 Tetratricopeptide repeats AK39_2347 SM00382 ATPases associated with a variety of cellular activities AK39_2348 SM00062 Bacterial periplasmic substrate-binding proteins AK39_2359 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_2361 SM00382 ATPases associated with a variety of cellular activities AK39_2400 SM00448 cheY-homologous receiver domain AK39_2400 SM00862 Transcriptional regulatory protein, C terminal AK39_2401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_2401 SM00387 Histidine kinase-like ATPases AK39_2401 SM00388 His Kinase A (phosphoacceptor) domain AK39_2402 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AK39_2410 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AK39_2423 SM00091 PAS domain AK39_2423 SM00382 ATPases associated with a variety of cellular activities AK39_2427 SM01130 AK39_2427 AK39_2433 SM01131 AK39_2433 AK39_2440 SM00341 Helicase and RNase D C-terminal AK39_2440 SM00487 DEAD-like helicases superfamily AK39_2440 SM00490 helicase superfamily c-terminal domain AK39_2440 SM00956 AK39_2440 AK39_2455 SM00849 Metallo-beta-lactamase superfamily AK39_2464 SM00060 Fibronectin type 3 domain AK39_2464 SM00495 Chitin-binding domain type 3 AK39_2471 SM00116 Domain in cystathionine beta-synthase and other proteins. AK39_2471 SM00382 ATPases associated with a variety of cellular activities AK39_2482 SM00861 Transketolase, pyrimidine binding domain AK39_2492 SM00420 helix_turn_helix, Deoxyribose operon repressor AK39_2492 SM01134 AK39_2492 AK39_2496 SM00382 ATPases associated with a variety of cellular activities AK39_252 SM00642 Alpha-amylase domain AK39_2520 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_2524 SM00871 Bacterial transcription activator, effector binding domain AK39_2550 SM00465 GIY-YIG type nucleases (URI domain) AK39_2572 SM00480 DNA polymerase III beta subunit AK39_2583 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_2592 SM00422 helix_turn_helix, mercury resistance AK39_260 SM00357 Cold shock protein domain AK39_2604 SM00740 AK39_2604 AK39_2605 SM00829 Enoylreductase AK39_2608 SM00387 Histidine kinase-like ATPases AK39_2608 SM00388 His Kinase A (phosphoacceptor) domain AK39_2611 SM00382 ATPases associated with a variety of cellular activities AK39_2616 SM00091 PAS domain AK39_2616 SM00387 Histidine kinase-like ATPases AK39_2616 SM00388 His Kinase A (phosphoacceptor) domain AK39_2641 SM01209 AK39_2641 AK39_2642 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_2649 SM00382 ATPases associated with a variety of cellular activities AK39_2655 SM00387 Histidine kinase-like ATPases AK39_2657 SM00448 cheY-homologous receiver domain AK39_2657 SM00862 Transcriptional regulatory protein, C terminal AK39_2668 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_2678 SM00422 helix_turn_helix, mercury resistance AK39_2678 SM00871 Bacterial transcription activator, effector binding domain AK39_268 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AK39_2683 SM00382 ATPases associated with a variety of cellular activities AK39_269 SM00448 cheY-homologous receiver domain AK39_269 SM00862 Transcriptional regulatory protein, C terminal AK39_2695 SM00448 cheY-homologous receiver domain AK39_2695 SM00862 Transcriptional regulatory protein, C terminal AK39_2696 SM00387 Histidine kinase-like ATPases AK39_2696 SM00388 His Kinase A (phosphoacceptor) domain AK39_270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_270 SM00387 Histidine kinase-like ATPases AK39_270 SM00388 His Kinase A (phosphoacceptor) domain AK39_2708 SM00878 Biotin carboxylase C-terminal domain AK39_2714 SM00382 ATPases associated with a variety of cellular activities AK39_2717 SM00450 Rhodanese Homology Domain AK39_2717 SM00849 Metallo-beta-lactamase superfamily AK39_2719 SM00860 SMI1 / KNR4 family AK39_2721 SM00052 Putative diguanylate phosphodiesterase AK39_2721 SM00091 PAS domain AK39_2721 SM00267 diguanylate cyclase AK39_2723 SM00382 ATPases associated with a variety of cellular activities AK39_2727 SM00646 AK39_2727 AK39_2732 SM00530 Helix-turn-helix XRE-family like proteins AK39_2750 SM00354 helix_turn _helix lactose operon repressor AK39_2751 SM00014 Acid phosphatase homologues AK39_2768 SM00855 Phosphoglycerate mutase family AK39_2769 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_2774 SM00382 ATPases associated with a variety of cellular activities AK39_278 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_278 SM00866 AK39_278 AK39_2780 SM00487 DEAD-like helicases superfamily AK39_2780 SM00490 helicase superfamily c-terminal domain AK39_2783 SM00849 Metallo-beta-lactamase superfamily AK39_2787 SM01207 AK39_2787 AK39_2804 SM00530 Helix-turn-helix XRE-family like proteins AK39_2806 SM00646 AK39_2806 AK39_2808 SM00382 ATPases associated with a variety of cellular activities AK39_2809 SM00382 ATPases associated with a variety of cellular activities AK39_2816 SM00859 Semialdehyde dehydrogenase, NAD binding domain AK39_2829 SM00357 Cold shock protein domain AK39_283 SM00382 ATPases associated with a variety of cellular activities AK39_2837 SM00530 Helix-turn-helix XRE-family like proteins AK39_2842 SM01059 Chloramphenicol acetyltransferase AK39_2846 SM00849 Metallo-beta-lactamase superfamily AK39_2852 SM00849 Metallo-beta-lactamase superfamily AK39_2865 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK39_2866 SM00363 S4 RNA-binding domain AK39_2874 SM00411 bacterial (prokaryotic) histone like domain AK39_2878 SM00923 MbtH-like protein AK39_2879 SM00823 Phosphopantetheine attachment site AK39_2879 SM00824 Thioesterase AK39_288 SM00387 Histidine kinase-like ATPases AK39_2886 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_289 SM00448 cheY-homologous receiver domain AK39_289 SM00862 Transcriptional regulatory protein, C terminal AK39_290 SM00342 helix_turn_helix, arabinose operon control protein AK39_290 SM00871 Bacterial transcription activator, effector binding domain AK39_291 SM00382 ATPases associated with a variety of cellular activities AK39_2914 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AK39_2925 SM00530 Helix-turn-helix XRE-family like proteins AK39_2930 SM00860 SMI1 / KNR4 family AK39_2932 SM00014 Acid phosphatase homologues AK39_2935 SM00219 Tyrosine kinase, catalytic domain AK39_2943 SM00382 ATPases associated with a variety of cellular activities AK39_2946 SM00882 Coenzyme A transferase AK39_2947 SM00882 Coenzyme A transferase AK39_2954 SM01091 Transporter associated domain AK39_2962 SM00382 ATPases associated with a variety of cellular activities AK39_2976 SM00829 Enoylreductase AK39_2979 SM00421 helix_turn_helix, Lux Regulon AK39_2979 SM00448 cheY-homologous receiver domain AK39_2980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AK39_3002 SM00563 Phosphate acyltransferases AK39_301 SM00046 Diacylglycerol kinase catalytic domain (presumed) AK39_3014 SM00382 ATPases associated with a variety of cellular activities AK39_3031 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_3031 SM00387 Histidine kinase-like ATPases AK39_3031 SM00388 His Kinase A (phosphoacceptor) domain AK39_3032 SM00448 cheY-homologous receiver domain AK39_3032 SM00862 Transcriptional regulatory protein, C terminal AK39_3043 SM00857 Resolvase, N terminal domain AK39_3050 SM00028 Tetratricopeptide repeats AK39_3053 SM00382 ATPases associated with a variety of cellular activities AK39_3056 SM00327 von Willebrand factor (vWF) type A domain AK39_3062 SM00028 Tetratricopeptide repeats AK39_3063 SM00028 Tetratricopeptide repeats AK39_3067 SM00836 DALR anticodon binding domain AK39_3067 SM01016 Arginyl tRNA synthetase N terminal dom AK39_307 SM00448 cheY-homologous receiver domain AK39_307 SM00862 Transcriptional regulatory protein, C terminal AK39_3071 SM00567 E-Z type HEAT repeats AK39_3071 SM00932 Scaffold protein Nfu/NifU N terminal AK39_3078 SM00382 ATPases associated with a variety of cellular activities AK39_3079 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_308 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_308 SM00387 Histidine kinase-like ATPases AK39_308 SM00388 His Kinase A (phosphoacceptor) domain AK39_3090 SM00894 Excalibur calcium-binding domain AK39_310 SM00899 AK39_310 AK39_3103 SM00852 Probable molybdopterin binding domain AK39_3105 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_3106 SM00100 Cyclic nucleotide-monophosphate binding domain AK39_3106 SM00419 helix_turn_helix, cAMP Regulatory protein AK39_3108 SM00382 ATPases associated with a variety of cellular activities AK39_3109 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_3113 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AK39_3118 SM00460 Transglutaminase/protease-like homologues AK39_3121 SM00849 Metallo-beta-lactamase superfamily AK39_3125 SM00829 Enoylreductase AK39_3129 SM00487 DEAD-like helicases superfamily AK39_3129 SM00490 helicase superfamily c-terminal domain AK39_3152 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_3158 SM01005 Alanine racemase, C-terminal domain AK39_3161 SM00855 Phosphoglycerate mutase family AK39_3162 SM00244 prohibitin homologues AK39_3176 SM01091 Transporter associated domain AK39_3181 SM00155 Phospholipase D. Active site motifs. AK39_3191 SM00855 Phosphoglycerate mutase family AK39_32 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_32 SM00357 Cold shock protein domain AK39_32 SM00955 AK39_32 AK39_3212 SM00833 Cobalamin synthesis protein cobW C-terminal domain AK39_322 SM00894 Excalibur calcium-binding domain AK39_3224 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_3224 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_3231 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_3233 SM00966 SpoVT / AbrB like domain AK39_3239 SM00460 Transglutaminase/protease-like homologues AK39_3258 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_3258 SM00387 Histidine kinase-like ATPases AK39_3258 SM00388 His Kinase A (phosphoacceptor) domain AK39_3259 SM00448 cheY-homologous receiver domain AK39_3259 SM00862 Transcriptional regulatory protein, C terminal AK39_326 SM01234 AK39_326 AK39_327 SM00947 Carbonic anhydrase AK39_3274 SM00387 Histidine kinase-like ATPases AK39_3274 SM00388 His Kinase A (phosphoacceptor) domain AK39_3275 SM00448 cheY-homologous receiver domain AK39_3275 SM00862 Transcriptional regulatory protein, C terminal AK39_3276 SM00382 ATPases associated with a variety of cellular activities AK39_3279 SM00287 Bacterial SH3 domain homologues AK39_3285 SM00382 ATPases associated with a variety of cellular activities AK39_3286 SM00382 ATPases associated with a variety of cellular activities AK39_3290 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_3297 SM00382 ATPases associated with a variety of cellular activities AK39_3298 SM00382 ATPases associated with a variety of cellular activities AK39_3305 SM00833 Cobalamin synthesis protein cobW C-terminal domain AK39_3325 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK39_3325 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK39_3325 SM00493 AK39_3325 AK39_3327 SM00287 Bacterial SH3 domain homologues AK39_3329 SM01011 Aminopeptidase P, N-terminal domain AK39_3335 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AK39_3337 SM01133 AK39_3337 AK39_3348 SM00450 Rhodanese Homology Domain AK39_3351 SM00387 Histidine kinase-like ATPases AK39_3351 SM00388 His Kinase A (phosphoacceptor) domain AK39_3352 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_3353 SM00448 cheY-homologous receiver domain AK39_3353 SM00862 Transcriptional regulatory protein, C terminal AK39_3355 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_3366 SM00850 LytTr DNA-binding domain AK39_3372 SM00854 Bacterial capsule synthesis protein PGA_cap AK39_339 SM00382 ATPases associated with a variety of cellular activities AK39_34 SM00448 cheY-homologous receiver domain AK39_34 SM00862 Transcriptional regulatory protein, C terminal AK39_3409 SM00047 Lysozyme subfamily 2 AK39_3410 SM00646 AK39_3410 AK39_3422 SM00487 DEAD-like helicases superfamily AK39_3422 SM00490 helicase superfamily c-terminal domain AK39_3423 SM00448 cheY-homologous receiver domain AK39_3424 SM00387 Histidine kinase-like ATPases AK39_3425 SM00919 Malic enzyme, NAD binding domain AK39_3425 SM01274 AK39_3425 AK39_3429 SM00155 Phospholipase D. Active site motifs. AK39_3432 SM00382 ATPases associated with a variety of cellular activities AK39_3434 SM00421 helix_turn_helix, Lux Regulon AK39_3434 SM00448 cheY-homologous receiver domain AK39_3443 SM00530 Helix-turn-helix XRE-family like proteins AK39_346 SM00387 Histidine kinase-like ATPases AK39_346 SM00388 His Kinase A (phosphoacceptor) domain AK39_3461 SM00833 Cobalamin synthesis protein cobW C-terminal domain AK39_3463 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_3463 SM00895 AK39_3463 AK39_347 SM00387 Histidine kinase-like ATPases AK39_3476 SM00855 Phosphoglycerate mutase family AK39_3479 SM00835 Cupin AK39_3483 SM00849 Metallo-beta-lactamase superfamily AK39_3483 SM01027 Beta-Casp domain AK39_3486 SM00382 ATPases associated with a variety of cellular activities AK39_3490 SM00530 Helix-turn-helix XRE-family like proteins AK39_3501 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK39_3519 SM00028 Tetratricopeptide repeats AK39_3522 SM00028 Tetratricopeptide repeats AK39_3528 SM00260 Two component signalling adaptor domain AK39_3528 SM00448 cheY-homologous receiver domain AK39_3537 SM00382 ATPases associated with a variety of cellular activities AK39_3554 SM00138 Methyltransferase, chemotaxis proteins AK39_3558 SM00260 Two component signalling adaptor domain AK39_3558 SM00387 Histidine kinase-like ATPases AK39_3558 SM01231 AK39_3558 AK39_3559 SM00073 Histidine Phosphotransfer domain AK39_3560 SM00448 cheY-homologous receiver domain AK39_358 SM00852 Probable molybdopterin binding domain AK39_3580 SM00849 Metallo-beta-lactamase superfamily AK39_3590 SM00357 Cold shock protein domain AK39_361 SM00014 Acid phosphatase homologues AK39_3615 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AK39_3615 SM00475 5'-3' exonuclease AK39_3621 SM00450 Rhodanese Homology Domain AK39_3634 SM00491 AK39_3634 AK39_3636 SM00981 AK39_3636 AK39_3647 SM00060 Fibronectin type 3 domain AK39_3649 SM00478 endonuclease III AK39_3649 SM00525 AK39_3649 AK39_3654 SM00479 AK39_3654 AK39_3654 SM00487 DEAD-like helicases superfamily AK39_3654 SM00491 AK39_3654 AK39_3663 SM00851 MGS-like domain AK39_3667 SM00986 Uracil DNA glycosylase superfamily AK39_3667 SM00987 UreE urease accessory protein, C-terminal domain AK39_3676 SM00914 AK39_3676 AK39_3677 SM00028 Tetratricopeptide repeats AK39_3681 SM00562 AK39_3681 AK39_3686 SM00411 bacterial (prokaryotic) histone like domain AK39_369 SM00382 ATPases associated with a variety of cellular activities AK39_3697 SM01240 AK39_3697 AK39_3698 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_3701 SM00870 AK39_3701 AK39_3703 SM00644 AK39_3703 AK39_3706 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK39_3708 SM00422 helix_turn_helix, mercury resistance AK39_371 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_3710 SM00257 Lysin motif AK39_3712 SM00487 DEAD-like helicases superfamily AK39_3712 SM00490 helicase superfamily c-terminal domain AK39_3717 SM00257 Lysin motif AK39_3719 SM00091 PAS domain AK39_3719 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_3719 SM00387 Histidine kinase-like ATPases AK39_3719 SM00388 His Kinase A (phosphoacceptor) domain AK39_3720 SM00448 cheY-homologous receiver domain AK39_3720 SM00862 Transcriptional regulatory protein, C terminal AK39_3724 SM00363 S4 RNA-binding domain AK39_3735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_3735 SM00387 Histidine kinase-like ATPases AK39_3735 SM00388 His Kinase A (phosphoacceptor) domain AK39_3739 SM00091 PAS domain AK39_3739 SM00387 Histidine kinase-like ATPases AK39_3739 SM00388 His Kinase A (phosphoacceptor) domain AK39_375 SM00382 ATPases associated with a variety of cellular activities AK39_3757 SM00421 helix_turn_helix, Lux Regulon AK39_3757 SM00448 cheY-homologous receiver domain AK39_3758 SM00387 Histidine kinase-like ATPases AK39_3794 SM01329 AK39_3794 AK39_3795 SM00917 LeuA allosteric (dimerisation) domain AK39_38 SM00382 ATPases associated with a variety of cellular activities AK39_3809 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_3833 SM00344 helix_turn_helix ASNC type AK39_3837 SM00382 ATPases associated with a variety of cellular activities AK39_3839 SM00382 ATPases associated with a variety of cellular activities AK39_3840 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_3843 SM00465 GIY-YIG type nucleases (URI domain) AK39_3843 SM00496 Intron-encoded nuclease repeat 2 AK39_3857 SM00387 Histidine kinase-like ATPases AK39_3857 SM00388 His Kinase A (phosphoacceptor) domain AK39_3861 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_3862 SM00387 Histidine kinase-like ATPases AK39_3862 SM00388 His Kinase A (phosphoacceptor) domain AK39_3868 SM00365 Leucine-rich repeat, SDS22-like subfamily AK39_3868 SM00369 Leucine-rich repeats, typical (most populated) subfamily AK39_3872 SM00420 helix_turn_helix, Deoxyribose operon repressor AK39_3872 SM01134 AK39_3872 AK39_3887 SM00822 AK39_3887 AK39_390 SM00450 Rhodanese Homology Domain AK39_3901 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_3901 SM00895 AK39_3901 AK39_3902 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_3902 SM00387 Histidine kinase-like ATPases AK39_3902 SM00388 His Kinase A (phosphoacceptor) domain AK39_3903 SM00448 cheY-homologous receiver domain AK39_3903 SM00862 Transcriptional regulatory protein, C terminal AK39_3913 SM00014 Acid phosphatase homologues AK39_3917 SM00382 ATPases associated with a variety of cellular activities AK39_3920 SM00530 Helix-turn-helix XRE-family like proteins AK39_3938 SM00530 Helix-turn-helix XRE-family like proteins AK39_3939 SM00861 Transketolase, pyrimidine binding domain AK39_394 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_3961 SM00635 Bacterial Ig-like domain 2 AK39_397 SM00852 Probable molybdopterin binding domain AK39_3993 SM00954 Region found in RelA / SpoT proteins AK39_3995 SM01118 AK39_3995 AK39_4 SM01192 AK39_4 AK39_4 SM01193 AK39_4 AK39_4001 SM00155 Phospholipase D. Active site motifs. AK39_4008 SM00382 ATPases associated with a variety of cellular activities AK39_4009 SM00382 ATPases associated with a variety of cellular activities AK39_4017 SM00825 Beta-ketoacyl synthase AK39_4023 SM00382 ATPases associated with a variety of cellular activities AK39_4023 SM01086 C-terminal, D2-small domain, of ClpB protein AK39_4032 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_4034 SM00530 Helix-turn-helix XRE-family like proteins AK39_4035 SM00642 Alpha-amylase domain AK39_4037 SM01060 AK39_4037 AK39_404 SM01058 CarD-like/TRCF domain AK39_4059 SM00357 Cold shock protein domain AK39_4067 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_4067 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4073 SM00448 cheY-homologous receiver domain AK39_4073 SM00862 Transcriptional regulatory protein, C terminal AK39_4074 SM00387 Histidine kinase-like ATPases AK39_4074 SM00388 His Kinase A (phosphoacceptor) domain AK39_4077 SM00342 helix_turn_helix, arabinose operon control protein AK39_4077 SM00871 Bacterial transcription activator, effector binding domain AK39_4080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_409 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_4092 SM00725 NEAr Transporter domain AK39_4097 SM00849 Metallo-beta-lactamase superfamily AK39_4099 SM00354 helix_turn _helix lactose operon repressor AK39_4120 SM00422 helix_turn_helix, mercury resistance AK39_413 SM00363 S4 RNA-binding domain AK39_4135 SM00382 ATPases associated with a variety of cellular activities AK39_4138 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_414 SM00420 helix_turn_helix, Deoxyribose operon repressor AK39_4147 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_4157 SM00530 Helix-turn-helix XRE-family like proteins AK39_4162 SM00028 Tetratricopeptide repeats AK39_4167 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_4175 SM00829 Enoylreductase AK39_418 SM00642 Alpha-amylase domain AK39_4182 SM00387 Histidine kinase-like ATPases AK39_4182 SM00388 His Kinase A (phosphoacceptor) domain AK39_4182 SM00448 cheY-homologous receiver domain AK39_4183 SM00138 Methyltransferase, chemotaxis proteins AK39_4184 SM00331 Sigma factor PP2C-like phosphatases AK39_4184 SM00448 cheY-homologous receiver domain AK39_4196 SM00460 Transglutaminase/protease-like homologues AK39_4201 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_4208 SM01120 AK39_4208 AK39_4215 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_422 SM00849 Metallo-beta-lactamase superfamily AK39_4240 SM00422 helix_turn_helix, mercury resistance AK39_4246 SM00448 cheY-homologous receiver domain AK39_4247 SM00091 PAS domain AK39_4247 SM00387 Histidine kinase-like ATPases AK39_4249 SM00860 SMI1 / KNR4 family AK39_4250 SM00860 SMI1 / KNR4 family AK39_4254 SM00382 ATPases associated with a variety of cellular activities AK39_4269 SM00646 AK39_4269 AK39_4280 SM00635 Bacterial Ig-like domain 2 AK39_4283 SM00957 SecA DEAD-like domain AK39_4283 SM00958 SecA preprotein cross-linking domain AK39_4290 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_4292 SM00644 AK39_4292 AK39_430 SM00843 AK39_430 AK39_4307 SM00382 ATPases associated with a variety of cellular activities AK39_4309 SM00062 Bacterial periplasmic substrate-binding proteins AK39_4309 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK39_4310 SM00382 ATPases associated with a variety of cellular activities AK39_4312 SM00382 ATPases associated with a variety of cellular activities AK39_4318 SM01060 AK39_4318 AK39_4331 SM00344 helix_turn_helix ASNC type AK39_4350 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AK39_4361 SM00382 ATPases associated with a variety of cellular activities AK39_4363 SM00287 Bacterial SH3 domain homologues AK39_4373 SM00829 Enoylreductase AK39_4378 SM00450 Rhodanese Homology Domain AK39_4382 SM00450 Rhodanese Homology Domain AK39_4382 SM00849 Metallo-beta-lactamase superfamily AK39_4383 SM00450 Rhodanese Homology Domain AK39_4385 SM00450 Rhodanese Homology Domain AK39_4388 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_4402 SM00354 helix_turn _helix lactose operon repressor AK39_4404 SM00640 Glycosyl hydrolases family 32 AK39_441 SM00354 helix_turn _helix lactose operon repressor AK39_4413 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_4430 SM00382 ATPases associated with a variety of cellular activities AK39_4432 SM00287 Bacterial SH3 domain homologues AK39_4435 SM00116 Domain in cystathionine beta-synthase and other proteins. AK39_4465 SM00899 AK39_4465 AK39_448 SM00248 ankyrin repeats AK39_4483 SM00530 Helix-turn-helix XRE-family like proteins AK39_449 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_449 SM00387 Histidine kinase-like ATPases AK39_449 SM00388 His Kinase A (phosphoacceptor) domain AK39_4492 SM00530 Helix-turn-helix XRE-family like proteins AK39_4494 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_450 SM00448 cheY-homologous receiver domain AK39_450 SM00862 Transcriptional regulatory protein, C terminal AK39_4501 SM00770 Zinc dependent phospholipase C (alpha toxin) AK39_4503 SM00829 Enoylreductase AK39_4510 SM00382 ATPases associated with a variety of cellular activities AK39_4513 SM00354 helix_turn _helix lactose operon repressor AK39_4516 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_4518 SM00382 ATPases associated with a variety of cellular activities AK39_4519 SM00382 ATPases associated with a variety of cellular activities AK39_4527 SM00448 cheY-homologous receiver domain AK39_4527 SM00862 Transcriptional regulatory protein, C terminal AK39_4528 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4528 SM00387 Histidine kinase-like ATPases AK39_4528 SM00388 His Kinase A (phosphoacceptor) domain AK39_453 SM00116 Domain in cystathionine beta-synthase and other proteins. AK39_4538 SM00062 Bacterial periplasmic substrate-binding proteins AK39_4538 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK39_4539 SM00382 ATPases associated with a variety of cellular activities AK39_4546 SM00642 Alpha-amylase domain AK39_4548 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_4548 SM00866 AK39_4548 AK39_4550 SM00052 Putative diguanylate phosphodiesterase AK39_4550 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AK39_4550 SM00091 PAS domain AK39_4550 SM00267 diguanylate cyclase AK39_4553 SM00155 Phospholipase D. Active site motifs. AK39_4554 SM00382 ATPases associated with a variety of cellular activities AK39_4555 SM00327 von Willebrand factor (vWF) type A domain AK39_4560 SM00382 ATPases associated with a variety of cellular activities AK39_4566 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_4579 SM00028 Tetratricopeptide repeats AK39_4580 SM00530 Helix-turn-helix XRE-family like proteins AK39_4583 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_4585 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AK39_4585 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AK39_4589 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AK39_4589 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK39_459 SM00363 S4 RNA-binding domain AK39_4593 SM00448 cheY-homologous receiver domain AK39_4593 SM00862 Transcriptional regulatory protein, C terminal AK39_4594 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4594 SM00387 Histidine kinase-like ATPases AK39_4594 SM00388 His Kinase A (phosphoacceptor) domain AK39_4596 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_4599 SM00919 Malic enzyme, NAD binding domain AK39_4599 SM01274 AK39_4599 AK39_4601 SM00448 cheY-homologous receiver domain AK39_4602 SM00387 Histidine kinase-like ATPases AK39_4603 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_4603 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4606 SM00387 Histidine kinase-like ATPases AK39_4606 SM00388 His Kinase A (phosphoacceptor) domain AK39_4607 SM00448 cheY-homologous receiver domain AK39_4607 SM00862 Transcriptional regulatory protein, C terminal AK39_4612 SM00382 ATPases associated with a variety of cellular activities AK39_4614 SM00248 ankyrin repeats AK39_462 SM00363 S4 RNA-binding domain AK39_462 SM01390 AK39_462 AK39_4620 SM00091 PAS domain AK39_4620 SM00387 Histidine kinase-like ATPases AK39_4621 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_4621 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4622 SM00244 prohibitin homologues AK39_4624 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AK39_4627 SM00364 Leucine-rich repeats, bacterial type AK39_4627 SM00365 Leucine-rich repeat, SDS22-like subfamily AK39_4627 SM00369 Leucine-rich repeats, typical (most populated) subfamily AK39_4627 SM00725 NEAr Transporter domain AK39_4629 SM00763 PrkA AAA domain AK39_4631 SM00052 Putative diguanylate phosphodiesterase AK39_4631 SM00091 PAS domain AK39_4631 SM00267 diguanylate cyclase AK39_4634 SM00567 E-Z type HEAT repeats AK39_4667 SM00382 ATPases associated with a variety of cellular activities AK39_4671 SM00382 ATPases associated with a variety of cellular activities AK39_4676 SM00478 endonuclease III AK39_4676 SM00525 AK39_4676 AK39_4692 SM00984 UDP binding domain AK39_4703 SM00530 Helix-turn-helix XRE-family like proteins AK39_4707 SM00382 ATPases associated with a variety of cellular activities AK39_471 SM00981 AK39_471 AK39_4756 SM00382 ATPases associated with a variety of cellular activities AK39_4763 SM00530 Helix-turn-helix XRE-family like proteins AK39_4769 SM00478 endonuclease III AK39_4789 SM00226 Low molecular weight phosphatase family AK39_4791 SM00831 Cation transporter/ATPase, N-terminus AK39_48 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_4800 SM00946 Prolyl-tRNA synthetase, C-terminal AK39_4805 SM00530 Helix-turn-helix XRE-family like proteins AK39_4811 SM00060 Fibronectin type 3 domain AK39_4811 SM00636 AK39_4811 AK39_4811 SM00637 AK39_4811 AK39_4812 SM00382 ATPases associated with a variety of cellular activities AK39_4813 SM00382 ATPases associated with a variety of cellular activities AK39_4817 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_4817 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4821 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK39_4821 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK39_4821 SM00493 AK39_4821 AK39_4825 SM00642 Alpha-amylase domain AK39_4826 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_4826 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4827 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_4827 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4828 SM00382 ATPases associated with a variety of cellular activities AK39_4829 SM00062 Bacterial periplasmic substrate-binding proteins AK39_4829 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK39_4850 SM01007 Class II Aldolase and Adducin N-terminal domain AK39_4859 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AK39_4872 SM00382 ATPases associated with a variety of cellular activities AK39_4875 SM00046 Diacylglycerol kinase catalytic domain (presumed) AK39_4876 SM00845 GatB domain AK39_4880 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_4887 SM00382 ATPases associated with a variety of cellular activities AK39_4887 SM00930 AK39_4887 AK39_4893 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK39_4893 SM00292 breast cancer carboxy-terminal domain AK39_4893 SM00532 Ligase N family AK39_4897 SM00244 prohibitin homologues AK39_4899 SM01209 AK39_4899 AK39_4899 SM01210 AK39_4899 AK39_49 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AK39_4900 SM00798 AICARFT/IMPCHase bienzyme AK39_4900 SM00851 MGS-like domain AK39_4905 SM01211 AK39_4905 AK39_4908 SM00998 Adenylosuccinate lyase C-terminus AK39_4910 SM01001 AIR carboxylase AK39_4915 SM00448 cheY-homologous receiver domain AK39_4915 SM00862 Transcriptional regulatory protein, C terminal AK39_4916 SM00387 Histidine kinase-like ATPases AK39_4916 SM00388 His Kinase A (phosphoacceptor) domain AK39_4917 SM00382 ATPases associated with a variety of cellular activities AK39_4936 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_4936 SM00387 Histidine kinase-like ATPases AK39_4936 SM00388 His Kinase A (phosphoacceptor) domain AK39_4937 SM00448 cheY-homologous receiver domain AK39_4937 SM00862 Transcriptional regulatory protein, C terminal AK39_4941 SM00883 Chaperonin 10 Kd subunit AK39_4944 SM00881 CoA binding domain AK39_4945 SM00382 ATPases associated with a variety of cellular activities AK39_4967 SM00731 SprT homologues. AK39_4968 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_4968 SM00732 Likely ribonuclease with RNase H fold. AK39_497 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AK39_497 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AK39_4971 SM01005 Alanine racemase, C-terminal domain AK39_4976 SM00487 DEAD-like helicases superfamily AK39_4976 SM00490 helicase superfamily c-terminal domain AK39_4987 SM00382 ATPases associated with a variety of cellular activities AK39_4989 SM00382 ATPases associated with a variety of cellular activities AK39_499 SM00530 Helix-turn-helix XRE-family like proteins AK39_4995 SM00382 ATPases associated with a variety of cellular activities AK39_5005 SM00354 helix_turn _helix lactose operon repressor AK39_5007 SM00563 Phosphate acyltransferases AK39_5026 SM00342 helix_turn_helix, arabinose operon control protein AK39_5029 SM00382 ATPases associated with a variety of cellular activities AK39_5030 SM00382 ATPases associated with a variety of cellular activities AK39_5040 SM00829 Enoylreductase AK39_5042 SM00382 ATPases associated with a variety of cellular activities AK39_5042 SM00930 AK39_5042 AK39_5053 SM01350 AK39_5053 AK39_5057 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_5057 SM00895 AK39_5057 AK39_5081 SM01251 AK39_5081 AK39_5084 SM00646 AK39_5084 AK39_5090 SM00382 ATPases associated with a variety of cellular activities AK39_5091 SM00382 ATPases associated with a variety of cellular activities AK39_5093 SM00662 RNA polymerases D AK39_5097 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_51 SM00363 S4 RNA-binding domain AK39_510 SM00849 Metallo-beta-lactamase superfamily AK39_5109 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AK39_5110 SM01374 AK39_5110 AK39_5114 SM00322 K homology RNA-binding domain AK39_5117 SM01382 AK39_5117 AK39_5117 SM01383 AK39_5117 AK39_512 SM00116 Domain in cystathionine beta-synthase and other proteins. AK39_5121 SM01403 AK39_5121 AK39_5123 SM00838 Elongation factor G C-terminus AK39_5123 SM00889 Elongation factor G, domain IV AK39_5127 SM00663 RNA polymerase I subunit A N-terminus AK39_5133 SM00649 Ribosomal protein L11/L12 AK39_5134 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AK39_5136 SM00421 helix_turn_helix, Lux Regulon AK39_5138 SM00967 RNA 2'-O ribose methyltransferase substrate binding AK39_5139 SM00535 Ribonuclease III family AK39_5140 SM00840 AK39_5140 AK39_5145 SM00670 Large family of predicted nucleotide-binding domains AK39_5147 SM00382 ATPases associated with a variety of cellular activities AK39_5148 SM00382 ATPases associated with a variety of cellular activities AK39_5148 SM01086 C-terminal, D2-small domain, of ClpB protein AK39_5158 SM00530 Helix-turn-helix XRE-family like proteins AK39_5160 SM00905 Dihydroneopterin aldolase AK39_5168 SM00382 ATPases associated with a variety of cellular activities AK39_5170 SM00977 TilS substrate C-terminal domain AK39_5171 SM00331 Sigma factor PP2C-like phosphatases AK39_5171 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AK39_5174 SM00316 Ribosomal protein S1-like RNA-binding domain AK39_5178 SM00363 S4 RNA-binding domain AK39_5181 SM00966 SpoVT / AbrB like domain AK39_5182 SM00487 DEAD-like helicases superfamily AK39_5182 SM00490 helicase superfamily c-terminal domain AK39_5182 SM00982 AK39_5182 AK39_5182 SM01058 CarD-like/TRCF domain AK39_5185 SM01400 AK39_5185 AK39_519 SM00481 DNA polymerase alpha chain like domain AK39_5194 SM00650 Ribosomal RNA adenine dimethylases AK39_5195 SM00493 AK39_5195 AK39_5198 SM00966 SpoVT / AbrB like domain AK39_520 SM00919 Malic enzyme, NAD binding domain AK39_520 SM01274 AK39_520 AK39_521 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_5216 SM00493 AK39_5216 AK39_5218 SM00382 ATPases associated with a variety of cellular activities AK39_5228 SM00936 Penicillin-binding protein 5, C-terminal domain AK39_5229 SM00116 Domain in cystathionine beta-synthase and other proteins. AK39_5229 SM01240 AK39_5229 AK39_5237 SM00434 DNA Topoisomerase IV AK39_5238 SM00387 Histidine kinase-like ATPases AK39_5238 SM00433 TopoisomeraseII AK39_5241 SM00480 DNA polymerase III beta subunit AK39_5242 SM00382 ATPases associated with a variety of cellular activities AK39_5242 SM00760 Bacterial dnaA protein helix-turn-helix domain AK39_5246 SM00393 Putative single-stranded nucleic acids-binding domain AK39_5246 SM01245 AK39_5246 AK39_5248 SM01228 AK39_5248 AK39_5250 SM00470 ParB-like nuclease domain AK39_5252 SM00470 ParB-like nuclease domain AK39_5261 SM00267 diguanylate cyclase AK39_5264 SM00788 Adenylosuccinate synthetase AK39_5269 SM00448 cheY-homologous receiver domain AK39_5269 SM00862 Transcriptional regulatory protein, C terminal AK39_5270 SM00091 PAS domain AK39_5270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_5270 SM00387 Histidine kinase-like ATPases AK39_5270 SM00388 His Kinase A (phosphoacceptor) domain AK39_5273 SM00849 Metallo-beta-lactamase superfamily AK39_5274 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK39_5279 SM01240 AK39_5279 AK39_5281 SM00487 DEAD-like helicases superfamily AK39_5281 SM00490 helicase superfamily c-terminal domain AK39_5292 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AK39_5292 SM00387 Histidine kinase-like ATPases AK39_5293 SM00448 cheY-homologous receiver domain AK39_5293 SM00850 LytTr DNA-binding domain AK39_530 SM01329 AK39_530 AK39_5305 SM00382 ATPases associated with a variety of cellular activities AK39_5310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_5316 SM00448 cheY-homologous receiver domain AK39_5316 SM00850 LytTr DNA-binding domain AK39_5319 SM00267 diguanylate cyclase AK39_5321 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AK39_5323 SM00421 helix_turn_helix, Lux Regulon AK39_5323 SM00448 cheY-homologous receiver domain AK39_5325 SM00100 Cyclic nucleotide-monophosphate binding domain AK39_5332 SM00354 helix_turn _helix lactose operon repressor AK39_5334 SM00382 ATPases associated with a variety of cellular activities AK39_5336 SM00986 Uracil DNA glycosylase superfamily AK39_5336 SM00987 UreE urease accessory protein, C-terminal domain AK39_534 SM00448 cheY-homologous receiver domain AK39_534 SM00862 Transcriptional regulatory protein, C terminal AK39_5345 SM00936 Penicillin-binding protein 5, C-terminal domain AK39_535 SM00091 PAS domain AK39_535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_535 SM00387 Histidine kinase-like ATPases AK39_535 SM00388 His Kinase A (phosphoacceptor) domain AK39_5355 SM00382 ATPases associated with a variety of cellular activities AK39_5357 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_536 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AK39_536 SM00474 3'-5' exonuclease AK39_536 SM00475 5'-3' exonuclease AK39_536 SM00482 DNA polymerase A domain AK39_5363 SM00422 helix_turn_helix, mercury resistance AK39_537 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AK39_537 SM01232 AK39_537 AK39_5371 SM00836 DALR anticodon binding domain AK39_5371 SM01016 Arginyl tRNA synthetase N terminal dom AK39_5381 SM00382 ATPases associated with a variety of cellular activities AK39_5383 SM00387 Histidine kinase-like ATPases AK39_5384 SM00421 helix_turn_helix, Lux Regulon AK39_5384 SM00448 cheY-homologous receiver domain AK39_5385 SM00530 Helix-turn-helix XRE-family like proteins AK39_5388 SM00052 Putative diguanylate phosphodiesterase AK39_5388 SM00267 diguanylate cyclase AK39_5390 SM00155 Phospholipase D. Active site motifs. AK39_540 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK39_5400 SM00448 cheY-homologous receiver domain AK39_5404 SM00357 Cold shock protein domain AK39_5404 SM00382 ATPases associated with a variety of cellular activities AK39_5404 SM00959 Rho termination factor, N-terminal domain AK39_5407 SM00937 AK39_5407 AK39_5414 SM00903 Flavin reductase like domain AK39_5417 SM00226 Low molecular weight phosphatase family AK39_5430 SM00382 ATPases associated with a variety of cellular activities AK39_5434 SM00052 Putative diguanylate phosphodiesterase AK39_5434 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AK39_5434 SM00091 PAS domain AK39_5434 SM00267 diguanylate cyclase AK39_544 SM00382 ATPases associated with a variety of cellular activities AK39_5451 SM00850 LytTr DNA-binding domain AK39_5452 SM00382 ATPases associated with a variety of cellular activities AK39_546 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK39_5465 SM00984 UDP binding domain AK39_5467 SM00287 Bacterial SH3 domain homologues AK39_5467 SM00382 ATPases associated with a variety of cellular activities AK39_5472 SM00448 cheY-homologous receiver domain AK39_5472 SM00862 Transcriptional regulatory protein, C terminal AK39_5473 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_5473 SM00387 Histidine kinase-like ATPases AK39_5473 SM00388 His Kinase A (phosphoacceptor) domain AK39_5478 SM00530 Helix-turn-helix XRE-family like proteins AK39_5480 SM00382 ATPases associated with a variety of cellular activities AK39_5489 SM00487 DEAD-like helicases superfamily AK39_5489 SM00490 helicase superfamily c-terminal domain AK39_5495 SM00287 Bacterial SH3 domain homologues AK39_5502 SM00287 Bacterial SH3 domain homologues AK39_5503 SM00287 Bacterial SH3 domain homologues AK39_5534 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AK39_5535 SM00382 ATPases associated with a variety of cellular activities AK39_5538 SM00984 UDP binding domain AK39_5545 SM00487 DEAD-like helicases superfamily AK39_5545 SM00490 helicase superfamily c-terminal domain AK39_5547 SM00357 Cold shock protein domain AK39_5549 SM00957 SecA DEAD-like domain AK39_5549 SM00958 SecA preprotein cross-linking domain AK39_5550 SM00937 AK39_5550 AK39_5552 SM00382 ATPases associated with a variety of cellular activities AK39_5554 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK39_5554 SM00245 tail specific protease AK39_5556 SM00382 ATPases associated with a variety of cellular activities AK39_5558 SM00382 ATPases associated with a variety of cellular activities AK39_5560 SM00422 helix_turn_helix, mercury resistance AK39_5563 SM00530 Helix-turn-helix XRE-family like proteins AK39_5566 SM00422 helix_turn_helix, mercury resistance AK39_5570 SM00487 DEAD-like helicases superfamily AK39_5570 SM00490 helicase superfamily c-terminal domain AK39_5578 SM00028 Tetratricopeptide repeats AK39_5602 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AK39_561 SM00967 RNA 2'-O ribose methyltransferase substrate binding AK39_5626 SM00530 Helix-turn-helix XRE-family like proteins AK39_5629 SM00843 AK39_5629 AK39_563 SM00873 B3/4 domain AK39_563 SM00874 tRNA synthetase B5 domain AK39_563 SM00896 Ferredoxin-fold anticodon binding domain AK39_5632 SM00864 Tubulin/FtsZ family, GTPase domain AK39_5682 SM00725 NEAr Transporter domain AK39_5687 SM00014 Acid phosphatase homologues AK39_5692 SM00984 UDP binding domain AK39_571 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK39_571 SM00481 DNA polymerase alpha chain like domain AK39_571 SM00483 DNA polymerase X family AK39_5715 SM00857 Resolvase, N terminal domain AK39_572 SM00463 Small MutS-related domain AK39_572 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AK39_572 SM00534 ATPase domain of DNA mismatch repair MUTS family AK39_5720 SM00758 AK39_5720 AK39_5721 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_574 SM00363 S4 RNA-binding domain AK39_5740 SM00860 SMI1 / KNR4 family AK39_5748 SM00954 Region found in RelA / SpoT proteins AK39_5754 SM00028 Tetratricopeptide repeats AK39_5757 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_576 SM00725 NEAr Transporter domain AK39_5761 SM00318 Staphylococcal nuclease homologues AK39_5763 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK39_5763 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK39_5763 SM00493 AK39_5763 AK39_577 SM00725 NEAr Transporter domain AK39_5777 SM00507 HNH nucleases AK39_5778 SM00487 DEAD-like helicases superfamily AK39_578 SM00725 NEAr Transporter domain AK39_58 SM01276 AK39_58 AK39_581 SM00382 ATPases associated with a variety of cellular activities AK39_585 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AK39_588 SM00448 cheY-homologous receiver domain AK39_588 SM00862 Transcriptional regulatory protein, C terminal AK39_589 SM00387 Histidine kinase-like ATPases AK39_589 SM00388 His Kinase A (phosphoacceptor) domain AK39_590 SM00382 ATPases associated with a variety of cellular activities AK39_603 SM00893 Electron transfer flavoprotein domain AK39_604 SM00893 Electron transfer flavoprotein domain AK39_606 SM00465 GIY-YIG type nucleases (URI domain) AK39_617 SM00382 ATPases associated with a variety of cellular activities AK39_622 SM00530 Helix-turn-helix XRE-family like proteins AK39_626 SM00342 helix_turn_helix, arabinose operon control protein AK39_626 SM00448 cheY-homologous receiver domain AK39_628 SM00382 ATPases associated with a variety of cellular activities AK39_629 SM00382 ATPases associated with a variety of cellular activities AK39_637 SM00421 helix_turn_helix, Lux Regulon AK39_644 SM00909 Sporulation and spore germination AK39_656 SM00382 ATPases associated with a variety of cellular activities AK39_656 SM00994 ClpX C4-type zinc finger AK39_656 SM01086 C-terminal, D2-small domain, of ClpB protein AK39_657 SM00382 ATPases associated with a variety of cellular activities AK39_658 SM00382 ATPases associated with a variety of cellular activities AK39_658 SM00464 Found in ATP-dependent protease La (LON) AK39_661 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_666 SM01004 Delta-aminolevulinic acid dehydratase AK39_668 SM00257 Lysin motif AK39_686 SM01317 AK39_686 AK39_688 SM00448 cheY-homologous receiver domain AK39_688 SM00862 Transcriptional regulatory protein, C terminal AK39_690 SM00387 Histidine kinase-like ATPases AK39_691 SM00382 ATPases associated with a variety of cellular activities AK39_701 SM00257 Lysin motif AK39_704 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_709 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK39_710 SM00382 ATPases associated with a variety of cellular activities AK39_714 SM01323 AK39_714 AK39_723 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_723 SM00954 Region found in RelA / SpoT proteins AK39_730 SM00382 ATPases associated with a variety of cellular activities AK39_734 SM00028 Tetratricopeptide repeats AK39_741 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK39_743 SM00732 Likely ribonuclease with RNase H fold. AK39_762 SM00382 ATPases associated with a variety of cellular activities AK39_767 SM00530 Helix-turn-helix XRE-family like proteins AK39_777 SM00855 Phosphoglycerate mutase family AK39_78 SM00347 helix_turn_helix multiple antibiotic resistance protein AK39_782 SM00098 Alkaline phosphatase homologues AK39_784 SM00954 Region found in RelA / SpoT proteins AK39_796 SM01103 AK39_796 AK39_798 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_802 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK39_811 SM00838 Elongation factor G C-terminus AK39_813 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_817 SM00271 DnaJ molecular chaperone homology domain AK39_82 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK39_82 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK39_820 SM00729 Elongator protein 3, MiaB family, Radical SAM AK39_826 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK39_833 SM00116 Domain in cystathionine beta-synthase and other proteins. AK39_835 SM00400 zinc finger AK39_835 SM00493 AK39_835 AK39_835 SM00766 DNA primase DnaG DnaB-binding AK39_842 SM00487 DEAD-like helicases superfamily AK39_842 SM00490 helicase superfamily c-terminal domain AK39_843 SM00518 AP endonuclease family 2 AK39_846 SM00382 ATPases associated with a variety of cellular activities AK39_859 SM00382 ATPases associated with a variety of cellular activities AK39_86 SM00387 Histidine kinase-like ATPases AK39_86 SM00388 His Kinase A (phosphoacceptor) domain AK39_867 SM00849 Metallo-beta-lactamase superfamily AK39_869 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK39_87 SM00448 cheY-homologous receiver domain AK39_87 SM00862 Transcriptional regulatory protein, C terminal AK39_874 SM01018 B12 binding domain AK39_885 SM00382 ATPases associated with a variety of cellular activities AK39_892 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AK39_899 SM00487 DEAD-like helicases superfamily AK39_899 SM00490 helicase superfamily c-terminal domain AK39_905 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK39_906 SM00382 ATPases associated with a variety of cellular activities AK39_916 SM00354 helix_turn _helix lactose operon repressor AK39_917 SM00450 Rhodanese Homology Domain AK39_92 SM00530 Helix-turn-helix XRE-family like proteins AK39_921 SM00529 Helix-turn-helix diphteria tox regulatory element AK39_928 SM00841 Elongation factor P, C-terminal AK39_928 SM01185 AK39_928 AK39_932 SM00382 ATPases associated with a variety of cellular activities AK39_942 SM00878 Biotin carboxylase C-terminal domain AK39_949 SM00861 Transketolase, pyrimidine binding domain AK39_950 SM00363 S4 RNA-binding domain AK39_953 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK39_954 SM00448 cheY-homologous receiver domain AK39_959 SM00091 PAS domain AK39_959 SM00382 ATPases associated with a variety of cellular activities AK39_961 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK39_965 SM00861 Transketolase, pyrimidine binding domain AK39_971 SM00062 Bacterial periplasmic substrate-binding proteins AK39_971 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK39_973 SM00382 ATPases associated with a variety of cellular activities AK39_982 SM00849 Metallo-beta-lactamase superfamily AK39_990 SM00859 Semialdehyde dehydrogenase, NAD binding domain AK39_997 SM00347 helix_turn_helix multiple antibiotic resistance protein