locus-tag class description RA13_00010 PF03606 C4-dicarboxylate anaerobic carrier RA13_00020 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RA13_00025 PF00528 Binding-protein-dependent transport system inner membrane component RA13_00035 PF07690 Major Facilitator Superfamily RA13_00040 PF05816 Toxic anion resistance protein (TelA) RA13_00045 PF14266 Putative component of 'biosynthetic module' RA13_00065 PF03741 Integral membrane protein TerC family RA13_00070 PF02342 TerD domain RA13_00075 PF02342 TerD domain RA13_00080 PF02342 TerD domain RA13_00085 PF00296 Luciferase-like monooxygenase RA13_00090 PF00950 ABC 3 transport family RA13_00095 PF00005 ABC transporter RA13_00100 PF01297 Zinc-uptake complex component A periplasmic RA13_00105 PF00128 Alpha amylase, catalytic domain RA13_00115 PF18801 response regulator aspartate phosphatase H, N terminal RA13_00120 PF13539 D-alanyl-D-alanine carboxypeptidase RA13_00125 PF16244 Domain of unknown function (DUF4901) RA13_00130 PF01475 Ferric uptake regulator family RA13_00140 PF17118 Domain of unknown function (DUF5105) RA13_00140 PF11611 Domain of unknown function (DUF4352) RA13_00145 PF00248 Aldo/keto reductase family RA13_00150 PF05225 helix-turn-helix, Psq domain RA13_00150 PF02810 SEC-C motif RA13_00155 PF01674 Lipase (class 2) RA13_00160 PF17763 Glutaminase/Asparaginase C-terminal domain RA13_00160 PF00710 Asparaginase, N-terminal RA13_00165 PF00440 Bacterial regulatory proteins, tetR family RA13_00170 PF07690 Major Facilitator Superfamily RA13_00175 PF00266 Aminotransferase class-V RA13_00180 PF01470 Pyroglutamyl peptidase RA13_00185 PF00902 Sec-independent protein translocase protein (TatC) RA13_00190 PF02416 mttA/Hcf106 family RA13_00195 PF16655 PhoD-like phosphatase, N-terminal domain RA13_00195 PF09423 PhoD-like phosphatase RA13_00200 PF07486 Cell Wall Hydrolase RA13_00210 PF10710 Protein of unknown function (DUF2512) RA13_00225 PF00005 ABC transporter RA13_00230 PF00512 His Kinase A (phospho-acceptor) domain RA13_00230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_00235 PF00486 Transcriptional regulatory protein, C terminal RA13_00235 PF00072 Response regulator receiver domain RA13_00240 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein RA13_00255 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RA13_00255 PF08666 SAF domain RA13_00260 PF07729 FCD domain RA13_00260 PF00392 Bacterial regulatory proteins, gntR family RA13_00265 PF13378 Enolase C-terminal domain-like RA13_00270 PF07690 Major Facilitator Superfamily RA13_00275 PF00171 Aldehyde dehydrogenase family RA13_00280 PF00701 Dihydrodipicolinate synthetase family RA13_00285 PF00072 Response regulator receiver domain RA13_00285 PF08664 YcbB domain RA13_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_00295 PF04960 Glutaminase RA13_00300 PF01235 Sodium:alanine symporter family RA13_00305 PF02574 Homocysteine S-methyltransferase RA13_00315 PF01063 Amino-transferase class IV RA13_00320 PF07853 Protein of unknown function (DUF1648) RA13_00330 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RA13_00335 PF00367 phosphotransferase system, EIIB RA13_00335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RA13_00335 PF00367 phosphotransferase system, EIIB RA13_00335 PF02378 Phosphotransferase system, EIIC RA13_00335 PF02378 Phosphotransferase system, EIIC RA13_00335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RA13_00340 PF00375 Sodium:dicarboxylate symporter family RA13_00350 PF12833 Helix-turn-helix domain RA13_00360 PF00082 Subtilase family RA13_00360 PF17936 Bacterial Ig domain RA13_00375 PF02666 Phosphatidylserine decarboxylase RA13_00380 PF09335 SNARE associated Golgi protein RA13_00385 PF01066 CDP-alcohol phosphatidyltransferase RA13_00395 PF13145 PPIC-type PPIASE domain RA13_00400 PF02222 ATP-grasp domain RA13_00405 PF00465 Iron-containing alcohol dehydrogenase RA13_00410 PF00892 EamA-like transporter family RA13_00415 PF08924 Domain of unknown function (DUF1906) RA13_00415 PF01471 Putative peptidoglycan binding domain RA13_00440 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RA13_00450 PF00535 Glycosyl transferase family 2 RA13_00450 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RA13_00455 PF00535 Glycosyl transferase family 2 RA13_00455 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RA13_00460 PF10852 Protein of unknown function (DUF2651) RA13_00465 PF07690 Major Facilitator Superfamily RA13_00470 PF03009 Glycerophosphoryl diester phosphodiesterase family RA13_00475 PF02690 Na+/Pi-cotransporter RA13_00485 PF00067 Cytochrome P450 RA13_00490 PF00905 Penicillin binding protein transpeptidase domain RA13_00495 PF17340 Family of unknown function (DUF5370) RA13_00500 PF17334 Minor curli fiber component A RA13_00505 PF00324 Amino acid permease RA13_00510 PF01047 MarR family RA13_00515 PF03788 LrgA family RA13_00520 PF04172 LrgB-like family RA13_00525 PF00248 Aldo/keto reductase family RA13_00530 PF00672 HAMP domain RA13_00530 PF00512 His Kinase A (phospho-acceptor) domain RA13_00535 PF00486 Transcriptional regulatory protein, C terminal RA13_00535 PF00072 Response regulator receiver domain RA13_00540 PF00561 alpha/beta hydrolase fold RA13_00545 PF00701 Dihydrodipicolinate synthetase family RA13_00550 PF04299 Putative FMN-binding domain RA13_00555 PF00392 Bacterial regulatory proteins, gntR family RA13_00555 PF00155 Aminotransferase class I and II RA13_00565 PF00282 Pyridoxal-dependent decarboxylase conserved domain RA13_00580 PF00376 MerR family regulatory protein RA13_00580 PF09278 MerR, DNA binding RA13_00625 PF10057 Uncharacterized conserved protein (DUF2294) RA13_00650 PF01380 SIS domain RA13_00655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RA13_00655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RA13_00655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RA13_00655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RA13_00660 PF07949 YbbR-like protein RA13_00665 PF02457 DisA bacterial checkpoint controller nucleotide-binding RA13_00670 PF13490 Putative zinc-finger RA13_00675 PF04542 Sigma-70 region 2 RA13_00675 PF08281 Sigma-70, region 4 RA13_00705 PF04463 Protein of unknown function (DUF523) RA13_00715 PF01380 SIS domain RA13_00720 PF01380 SIS domain RA13_00720 PF01418 Helix-turn-helix domain, rpiR family RA13_00725 PF02378 Phosphotransferase system, EIIC RA13_00725 PF00367 phosphotransferase system, EIIB RA13_00730 PF00144 Beta-lactamase RA13_00735 PF01915 Glycosyl hydrolase family 3 C-terminal domain RA13_00735 PF00933 Glycosyl hydrolase family 3 N terminal domain RA13_00740 PF07075 Protein of unknown function (DUF1343) RA13_00745 PF01497 Periplasmic binding protein RA13_00745 PF12833 Helix-turn-helix domain RA13_00750 PF01497 Periplasmic binding protein RA13_00755 PF01032 FecCD transport family RA13_00760 PF01032 FecCD transport family RA13_00765 PF00756 Putative esterase RA13_00770 PF01758 Sodium Bile acid symporter family RA13_00775 PF00916 Sulfate permease family RA13_00775 PF01740 STAS domain RA13_00780 PF00107 Zinc-binding dehydrogenase RA13_00780 PF08240 Alcohol dehydrogenase GroES-like domain RA13_00795 PF07690 Major Facilitator Superfamily RA13_00825 PF01522 Polysaccharide deacetylase RA13_00830 PF14089 KinB-signalling pathway activation in sporulation RA13_00835 PF17898 Spore germination GerD central core domain RA13_00840 PF10609 NUBPL iron-transfer P-loop NTPase RA13_00845 PF01520 N-acetylmuramoyl-L-alanine amidase RA13_00850 PF10730 Protein of unknown function (DUF2521) RA13_00865 PF08241 Methyltransferase domain RA13_00875 PF00380 Ribosomal protein S9/S16 RA13_00880 PF00572 Ribosomal protein L13 RA13_00885 PF01416 tRNA pseudouridine synthase RA13_00890 PF02361 Cobalt transport protein RA13_00895 PF00005 ABC transporter RA13_00900 PF00005 ABC transporter RA13_00905 PF01196 Ribosomal protein L17 RA13_00910 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RA13_00910 PF01000 RNA polymerase Rpb3/RpoA insert domain RA13_00910 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RA13_00915 PF00411 Ribosomal protein S11 RA13_00920 PF00416 Ribosomal protein S13/S18 RA13_00925 PF00444 Ribosomal protein L36 RA13_00930 PF01176 Translation initiation factor 1A / IF-1 RA13_00940 PF00557 Metallopeptidase family M24 RA13_00945 PF05191 Adenylate kinase, active site lid RA13_00950 PF00344 SecY translocase RA13_00960 PF00327 Ribosomal protein L30p/L7e RA13_00965 PF03719 Ribosomal protein S5, C-terminal domain RA13_00965 PF00333 Ribosomal protein S5, N-terminal domain RA13_00970 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RA13_00975 PF00347 Ribosomal protein L6 RA13_00980 PF00410 Ribosomal protein S8 RA13_00985 PF00253 Ribosomal protein S14p/S29e RA13_00990 PF00281 Ribosomal protein L5 RA13_00990 PF00673 ribosomal L5P family C-terminus RA13_00995 PF00467 KOW motif RA13_00995 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RA13_01000 PF00238 Ribosomal protein L14p/L23e RA13_01005 PF00366 Ribosomal protein S17 RA13_01010 PF00831 Ribosomal L29 protein RA13_01015 PF00252 Ribosomal protein L16p/L10e RA13_01020 PF07650 KH domain RA13_01020 PF00189 Ribosomal protein S3, C-terminal domain RA13_01025 PF00237 Ribosomal protein L22p/L17e RA13_01030 PF00203 Ribosomal protein S19 RA13_01035 PF03947 Ribosomal Proteins L2, C-terminal domain RA13_01035 PF00181 Ribosomal Proteins L2, RNA binding domain RA13_01040 PF00276 Ribosomal protein L23 RA13_01045 PF00573 Ribosomal protein L4/L1 family RA13_01050 PF00297 Ribosomal protein L3 RA13_01055 PF00338 Ribosomal protein S10p/S20e RA13_01060 PF12146 Serine aminopeptidase, S33 RA13_01065 PF03143 Elongation factor Tu C-terminal domain RA13_01065 PF03144 Elongation factor Tu domain 2 RA13_01065 PF00009 Elongation factor Tu GTP binding domain RA13_01070 PF00009 Elongation factor Tu GTP binding domain RA13_01070 PF14492 Elongation Factor G, domain II RA13_01070 PF03764 Elongation factor G, domain IV RA13_01070 PF00679 Elongation factor G C-terminus RA13_01070 PF03144 Elongation factor Tu domain 2 RA13_01075 PF00177 Ribosomal protein S7p/S5e RA13_01085 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RA13_01090 PF04997 RNA polymerase Rpb1, domain 1 RA13_01090 PF00623 RNA polymerase Rpb1, domain 2 RA13_01090 PF04998 RNA polymerase Rpb1, domain 5 RA13_01090 PF04983 RNA polymerase Rpb1, domain 3 RA13_01090 PF05000 RNA polymerase Rpb1, domain 4 RA13_01095 PF04563 RNA polymerase beta subunit RA13_01095 PF00562 RNA polymerase Rpb2, domain 6 RA13_01095 PF04560 RNA polymerase Rpb2, domain 7 RA13_01095 PF04561 RNA polymerase Rpb2, domain 2 RA13_01095 PF04565 RNA polymerase Rpb2, domain 3 RA13_01095 PF10385 RNA polymerase beta subunit external 1 domain RA13_01100 PF05175 Methyltransferase small domain RA13_01105 PF16320 Ribosomal protein L7/L12 dimerisation domain RA13_01105 PF00542 Ribosomal protein L7/L12 C-terminal domain RA13_01110 PF00466 Ribosomal protein L10 RA13_01115 PF00687 Ribosomal protein L1p/L10e family RA13_01120 PF03946 Ribosomal protein L11, N-terminal domain RA13_01120 PF00298 Ribosomal protein L11, RNA binding domain RA13_01125 PF02357 Transcription termination factor nusG RA13_01125 PF00467 KOW motif RA13_01130 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RA13_01135 PF00471 Ribosomal protein L33 RA13_01140 PF08281 Sigma-70, region 4 RA13_01140 PF04542 Sigma-70 region 2 RA13_01145 PF05991 YacP-like NYN domain RA13_01150 PF08032 RNA 2'-O ribose methyltransferase substrate binding RA13_01150 PF00588 SpoU rRNA Methylase family RA13_01155 PF00636 Ribonuclease III domain RA13_01160 PF01406 tRNA synthetases class I (C) catalytic domain RA13_01160 PF09190 DALR domain RA13_01170 PF00749 tRNA synthetases class I (E and Q), catalytic domain RA13_01175 PF02542 YgbB family RA13_01180 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RA13_01190 PF02457 DisA bacterial checkpoint controller nucleotide-binding RA13_01190 PF10635 DisA bacterial checkpoint controller linker region RA13_01195 PF18073 Rubredoxin metal binding domain RA13_01200 PF00004 ATPase family associated with various cellular activities (AAA) RA13_01200 PF10431 C-terminal, D2-small domain, of ClpB protein RA13_01200 PF02861 Clp amino terminal domain, pathogenicity island component RA13_01200 PF17871 AAA lid domain RA13_01200 PF07724 AAA domain (Cdc48 subfamily) RA13_01205 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain RA13_01210 PF02151 UvrB/uvrC motif RA13_01215 PF17727 CtsR C-terminal dimerization domain RA13_01215 PF05848 CtsR N-terminal HTH domain RA13_01295 PF00152 tRNA synthetases class II (D, K and N) RA13_01295 PF01336 OB-fold nucleic acid binding domain RA13_01300 PF01207 Dihydrouridine synthase (Dus) RA13_01305 PF01381 Helix-turn-helix RA13_01310 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RA13_01315 PF02152 Dihydroneopterin aldolase RA13_01320 PF00809 Pterin binding enzyme RA13_01325 PF01063 Amino-transferase class IV RA13_01330 PF00117 Glutamine amidotransferase class-I RA13_01335 PF00425 chorismate binding enzyme RA13_01335 PF04715 Anthranilate synthase component I, N terminal region RA13_01340 PF00291 Pyridoxal-phosphate dependent enzyme RA13_01345 PF13145 PPIC-type PPIASE domain RA13_01350 PF01430 Hsp33 protein RA13_01355 PF03309 Type III pantothenate kinase RA13_01360 PF00004 ATPase family associated with various cellular activities (AAA) RA13_01360 PF17862 AAA+ lid domain RA13_01360 PF01434 Peptidase family M41 RA13_01360 PF06480 FtsH Extracellular RA13_01370 PF09179 TilS substrate binding domain RA13_01370 PF11734 TilS substrate C-terminal domain RA13_01370 PF01171 PP-loop family RA13_01375 PF00069 Protein kinase domain RA13_01380 PF00092 von Willebrand factor type A domain RA13_01385 PF07228 Stage II sporulation protein E (SpoIIE) RA13_01400 PF00575 S1 RNA binding domain RA13_01405 PF04977 Septum formation initiator RA13_01410 PF09578 Spore cortex protein YabQ (Spore_YabQ) RA13_01415 PF07873 YabP family RA13_01420 PF01479 S4 domain RA13_01425 PF03819 MazG nucleotide pyrophosphohydrolase domain RA13_01425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RA13_01430 PF14667 Polysaccharide biosynthesis C-terminal domain RA13_01430 PF01943 Polysaccharide biosynthesis protein RA13_01435 PF15714 Stage V sporulation protein T C-terminal, transcription factor RA13_01435 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RA13_01440 PF02559 CarD-like/TRCF domain RA13_01440 PF17757 UvrB interaction domain RA13_01440 PF03461 TRCF domain RA13_01440 PF00271 Helicase conserved C-terminal domain RA13_01440 PF00270 DEAD/DEAH box helicase RA13_01445 PF10955 Protein of unknown function (DUF2757) RA13_01455 PF14693 Ribosomal protein TL5, C-terminal domain RA13_01455 PF01386 Ribosomal L25p family RA13_01460 PF14572 Phosphoribosyl synthetase-associated domain RA13_01460 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RA13_01465 PF00132 Bacterial transferase hexapeptide (six repeats) RA13_01465 PF00483 Nucleotidyl transferase RA13_01470 PF04026 SpoVG RA13_01475 PF01042 Endoribonuclease L-PSP RA13_01480 PF09182 Bacterial purine repressor, N-terminal RA13_01480 PF00156 Phosphoribosyl transferase domain RA13_01485 PF08544 GHMP kinases C terminal RA13_01485 PF00288 GHMP kinases N terminal domain RA13_01490 PF00269 Small, acid-soluble spore proteins, alpha/beta type RA13_01495 PF06257 Biofilm formation stimulator VEG RA13_01500 PF05582 YabG peptidase U57 RA13_01505 PF00398 Ribosomal RNA adenine dimethylase RA13_01510 PF13331 Domain of unknown function (DUF4093) RA13_01510 PF13662 Toprim domain RA13_01515 PF07501 G5 domain RA13_01515 PF06725 3D domain RA13_01515 PF03990 G5-linked-Ubiquitin-like domain RA13_01525 PF08264 Anticodon-binding domain of tRNA RA13_01525 PF09334 tRNA synthetases class I (M) RA13_01525 PF01588 Putative tRNA binding domain RA13_01530 PF18277 AbrB C-terminal domain RA13_01530 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RA13_01535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RA13_01540 PF01541 GIY-YIG catalytic domain RA13_01545 PF05175 Methyltransferase small domain RA13_01550 PF06156 Initiation control protein YabA RA13_01555 PF04468 PSP1 C-terminal conserved region RA13_01560 PF09115 DNA polymerase III, delta subunit, C terminal RA13_01565 PF03885 Protein of unknown function (DUF327) RA13_01570 PF06153 Cyclic-di-AMP receptor RA13_01575 PF02223 Thymidylate kinase RA13_01585 PF05816 Toxic anion resistance protein (TelA) RA13_01590 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein RA13_01595 PF10764 Inhibitor of sigma-G Gin RA13_01625 PF07441 SigmaK-factor processing regulatory protein BofA RA13_01630 PF10704 Protein of unknown function (DUF2508) RA13_01635 PF02132 RecR protein RA13_01635 PF13662 Toprim domain RA13_01640 PF02575 YbaB/EbfC DNA-binding family RA13_01645 PF12169 DNA polymerase III subunits gamma and tau domain III RA13_01655 PF14437 MafB19-like deaminase RA13_01660 PF00857 Isochorismatase family RA13_01665 PF01476 LysM domain RA13_01665 PF00704 Glycosyl hydrolases family 18 RA13_01670 PF01712 Deoxynucleoside kinase RA13_01675 PF01712 Deoxynucleoside kinase RA13_01685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RA13_01685 PF02403 Seryl-tRNA synthetase N-terminal domain RA13_01690 PF01174 SNO glutamine amidotransferase family RA13_01695 PF01680 SOR/SNZ family RA13_01700 PF07943 Penicillin-binding protein 5, C-terminal domain RA13_01700 PF00768 D-alanyl-D-alanine carboxypeptidase RA13_01705 PF00571 CBS domain RA13_01705 PF00478 IMP dehydrogenase / GMP reductase domain RA13_01710 PF14175 YaaC-like Protein RA13_01775 PF03989 DNA gyrase C-terminal domain, beta-propeller RA13_01775 PF00521 DNA gyrase/topoisomerase IV, subunit A RA13_01780 PF01751 Toprim domain RA13_01780 PF00204 DNA gyrase B RA13_01780 PF00986 DNA gyrase B subunit, carboxyl terminus RA13_01780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_01785 PF04025 Domain of unknown function (DUF370) RA13_01790 PF02463 RecF/RecN/SMC N terminal domain RA13_01800 PF02768 DNA polymerase III beta subunit, C-terminal domain RA13_01800 PF02767 DNA polymerase III beta subunit, central domain RA13_01800 PF00712 DNA polymerase III beta subunit, N-terminal domain RA13_01805 PF00308 Bacterial dnaA protein RA13_01805 PF11638 DnaA N-terminal domain RA13_01805 PF08299 Bacterial dnaA protein helix-turn-helix RA13_01810 PF00468 Ribosomal protein L34 RA13_01815 PF00825 Ribonuclease P RA13_01820 PF02096 60Kd inner membrane protein RA13_01825 PF14804 Jag N-terminus RA13_01825 PF01424 R3H domain RA13_01830 PF12631 MnmE helical domain RA13_01830 PF10396 GTP-binding protein TrmE N-terminus RA13_01830 PF01926 50S ribosome-binding GTPase RA13_01835 PF13932 GidA associated domain RA13_01835 PF01134 Glucose inhibited division protein A RA13_01845 PF02195 ParB-like nuclease domain RA13_01845 PF17762 HTH domain found in ParB protein RA13_01850 PF06713 Bacterial PH domain RA13_01855 PF13614 AAA domain RA13_01860 PF17762 HTH domain found in ParB protein RA13_01860 PF02195 ParB-like nuclease domain RA13_01865 PF06866 Protein of unknown function (DUF1256) RA13_01875 PF06107 Bacterial protein of unknown function (DUF951) RA13_01880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA13_01880 PF01568 Molydopterin dinucleotide binding domain RA13_01880 PF00384 Molybdopterin oxidoreductase RA13_01885 PF06071 Protein of unknown function (DUF933) RA13_01885 PF01926 50S ribosome-binding GTPase RA13_01890 PF01250 Ribosomal protein S6 RA13_01895 PF00436 Single-strand binding protein family RA13_01900 PF01084 Ribosomal protein S18 RA13_01910 PF00392 Bacterial regulatory proteins, gntR family RA13_01910 PF07729 FCD domain RA13_01915 PF00892 EamA-like transporter family RA13_01920 PF03372 Endonuclease/Exonuclease/phosphatase family RA13_01925 PF12833 Helix-turn-helix domain RA13_01925 PF02805 Metal binding domain of Ada RA13_01935 PF00356 Bacterial regulatory proteins, lacI family RA13_01935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RA13_01940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_01950 PF03190 Protein of unknown function, DUF255 RA13_01960 PF06114 IrrE N-terminal-like domain RA13_01975 PF00512 His Kinase A (phospho-acceptor) domain RA13_01975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_01980 PF00486 Transcriptional regulatory protein, C terminal RA13_01980 PF00072 Response regulator receiver domain RA13_02000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_02000 PF07730 Histidine kinase RA13_02005 PF00196 Bacterial regulatory proteins, luxR family RA13_02005 PF00072 Response regulator receiver domain RA13_02010 PF03176 MMPL family RA13_02020 PF13411 MerR HTH family regulatory protein RA13_02020 PF06445 GyrI-like small molecule binding domain RA13_02025 PF00392 Bacterial regulatory proteins, gntR family RA13_02025 PF07729 FCD domain RA13_02030 PF00180 Isocitrate/isopropylmalate dehydrogenase RA13_02040 PF13302 Acetyltransferase (GNAT) domain RA13_02045 PF07690 Major Facilitator Superfamily RA13_02055 PF01368 DHH family RA13_02055 PF02833 DHHA2 domain RA13_02060 PF01638 HxlR-like helix-turn-helix RA13_02065 PF07875 Coat F domain RA13_02075 PF09991 Predicted membrane protein (DUF2232) RA13_02080 PF01368 DHH family RA13_02080 PF02272 DHHA1 domain RA13_02085 PF03948 Ribosomal protein L9, C-terminal domain RA13_02085 PF01281 Ribosomal protein L9, N-terminal domain RA13_02090 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RA13_02095 PF07690 Major Facilitator Superfamily RA13_02100 PF14174 YycC-like protein RA13_02110 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) RA13_02115 PF00772 DnaB-like helicase N terminal domain RA13_02115 PF03796 DnaB-like helicase C terminal domain RA13_02120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_02150 PF00072 Response regulator receiver domain RA13_02150 PF00486 Transcriptional regulatory protein, C terminal RA13_02155 PF13426 PAS domain RA13_02155 PF00512 His Kinase A (phospho-acceptor) domain RA13_02155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_02155 PF00672 HAMP domain RA13_02160 PF07435 YycH protein RA13_02165 PF09648 YycH protein RA13_02170 PF00753 Metallo-beta-lactamase superfamily RA13_02175 PF13180 PDZ domain RA13_02195 PF16326 ABC transporter C-terminal domain RA13_02195 PF12848 ABC transporter RA13_02195 PF00005 ABC transporter RA13_02205 PF02954 Bacterial regulatory protein, Fis family RA13_02205 PF13426 PAS domain RA13_02205 PF00158 Sigma-54 interaction domain RA13_02210 PF01022 Bacterial regulatory protein, arsR family RA13_02215 PF13630 SdpI/YhfL protein family RA13_02215 PF07853 Protein of unknown function (DUF1648) RA13_02220 PF00202 Aminotransferase class-III RA13_02225 PF00324 Amino acid permease RA13_02230 PF00491 Arginase family RA13_02235 PF00583 Acetyltransferase (GNAT) family RA13_02255 PF08240 Alcohol dehydrogenase GroES-like domain RA13_02255 PF00107 Zinc-binding dehydrogenase RA13_02260 PF14116 YyzF-like protein RA13_02265 PF02590 Predicted SPOUT methyltransferase RA13_02270 PF00145 C-5 cytosine-specific DNA methylase RA13_02295 PF04002 RadC-like JAB domain RA13_02340 PF02796 Helix-turn-helix domain of resolvase RA13_02340 PF00239 Resolvase, N terminal domain RA13_02360 PF04239 Protein of unknown function (DUF421) RA13_02365 PF00654 Voltage gated chloride channel RA13_02370 PF06874 Firmicute fructose-1,6-bisphosphatase RA13_02375 PF00005 ABC transporter RA13_02395 PF00324 Amino acid permease RA13_02405 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_02405 PF13192 Thioredoxin domain RA13_02410 PF00578 AhpC/TSA family RA13_02425 PF02447 GntP family permease RA13_02430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RA13_02430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RA13_02435 PF07729 FCD domain RA13_02435 PF00392 Bacterial regulatory proteins, gntR family RA13_02440 PF05651 Putative sugar diacid recognition RA13_02440 PF17853 GGDEF-like domain RA13_02440 PF13556 PucR C-terminal helix-turn-helix domain RA13_02445 PF02447 GntP family permease RA13_02450 PF02595 Glycerate kinase family RA13_02455 PF04230 Polysaccharide pyruvyl transferase RA13_02490 PF00440 Bacterial regulatory proteins, tetR family RA13_02495 PF07883 Cupin domain RA13_02500 PF04235 Protein of unknown function (DUF418) RA13_02505 PF06271 RDD family RA13_02510 PF17369 Family of unknown function (DUF5391) RA13_02515 PF00171 Aldehyde dehydrogenase family RA13_02520 PF00440 Bacterial regulatory proteins, tetR family RA13_02530 PF00183 Hsp90 protein RA13_02535 PF00083 Sugar (and other) transporter RA13_02555 PF00248 Aldo/keto reductase family RA13_02560 PF08220 DeoR-like helix-turn-helix domain RA13_02560 PF00455 DeoR C terminal sensor domain RA13_02565 PF00171 Aldehyde dehydrogenase family RA13_02570 PF04962 KduI/IolB family RA13_02575 PF00294 pfkB family carbohydrate kinase RA13_02580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA13_02580 PF00205 Thiamine pyrophosphate enzyme, central domain RA13_02580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA13_02585 PF01261 Xylose isomerase-like TIM barrel RA13_02590 PF07690 Major Facilitator Superfamily RA13_02595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA13_02595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA13_02600 PF01261 Xylose isomerase-like TIM barrel RA13_02605 PF01261 Xylose isomerase-like TIM barrel RA13_02610 PF01116 Fructose-bisphosphate aldolase class-II RA13_02615 PF01497 Periplasmic binding protein RA13_02625 PF00072 Response regulator receiver domain RA13_02625 PF00486 Transcriptional regulatory protein, C terminal RA13_02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_02635 PF00005 ABC transporter RA13_02640 PF02687 FtsX-like permease family RA13_02645 PF06486 Protein of unknown function (DUF1093) RA13_02660 PF11631 Protein of unknown function (DUF3255) RA13_02675 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family RA13_02685 PF04346 Ethanolamine utilisation protein, EutH RA13_02690 PF06724 Domain of Unknown Function (DUF1206) RA13_02695 PF04198 Putative sugar-binding domain RA13_02700 PF01791 DeoC/LacD family aldolase RA13_02705 PF07662 Na+ dependent nucleoside transporter C-terminus RA13_02705 PF01773 Na+ dependent nucleoside transporter N-terminus RA13_02710 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RA13_02710 PF00591 Glycosyl transferase family, a/b domain RA13_02710 PF02885 Glycosyl transferase family, helical bundle domain RA13_02720 PF00491 Arginase family RA13_02725 PF01979 Amidohydrolase family RA13_02730 PF17391 Urocanase N-terminal domain RA13_02730 PF17392 Urocanase C-terminal domain RA13_02730 PF01175 Urocanase Rossmann-like domain RA13_02735 PF00221 Aromatic amino acid lyase RA13_02740 PF09021 HutP RA13_02755 PF18801 response regulator aspartate phosphatase H, N terminal RA13_02795 PF16369 C-terminal lipocalin-like domain RA13_02795 PF04616 Glycosyl hydrolases family 43 RA13_02805 PF01820 D-ala D-ala ligase N-terminus RA13_02805 PF07478 D-ala D-ala ligase C-terminus RA13_02820 PF00155 Aminotransferase class I and II RA13_02825 PF00367 phosphotransferase system, EIIB RA13_02825 PF02378 Phosphotransferase system, EIIC RA13_02825 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RA13_02830 PF00232 Glycosyl hydrolase family 1 RA13_02835 PF00582 Universal stress protein family RA13_02855 PF10014 2OG-Fe dioxygenase RA13_02865 PF00892 EamA-like transporter family RA13_02885 PF05593 RHS Repeat RA13_02925 PF14176 YxiJ-like protein RA13_02945 PF13472 GDSL-like Lipase/Acylhydrolase family RA13_02950 PF00805 Pentapeptide repeats (8 copies) RA13_02960 PF00271 Helicase conserved C-terminal domain RA13_02960 PF00270 DEAD/DEAH box helicase RA13_02960 PF03880 DbpA RNA binding domain RA13_02965 PF11700 Vacuole effluxer Atg22 like RA13_02975 PF03123 CAT RNA binding domain RA13_02975 PF00874 PRD domain RA13_02985 PF03600 Citrate transporter RA13_02990 PF00199 Catalase RA13_02990 PF06628 Catalase-related immune-responsive RA13_02990 PF18011 C-terminal domain found in long catalases RA13_03005 PF07662 Na+ dependent nucleoside transporter C-terminus RA13_03005 PF01773 Na+ dependent nucleoside transporter N-terminus RA13_03010 PF08241 Methyltransferase domain RA13_03020 PF01144 Coenzyme A transferase RA13_03025 PF01144 Coenzyme A transferase RA13_03035 PF00158 Sigma-54 interaction domain RA13_03035 PF00989 PAS fold RA13_03035 PF02954 Bacterial regulatory protein, Fis family RA13_03040 PF01717 Cobalamin-independent synthase, Catalytic domain RA13_03045 PF04525 LURP-one-related RA13_03060 PF01546 Peptidase family M20/M25/M40 RA13_03060 PF07687 Peptidase dimerisation domain RA13_03070 PF16363 GDP-mannose 4,6 dehydratase RA13_03075 PF11611 Domain of unknown function (DUF4352) RA13_03080 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RA13_03080 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RA13_03090 PF13556 PucR C-terminal helix-turn-helix domain RA13_03095 PF03459 TOBE domain RA13_03095 PF17912 MalK OB fold domain RA13_03095 PF00005 ABC transporter RA13_03100 PF01522 Polysaccharide deacetylase RA13_03110 PF03390 2-hydroxycarboxylate transporter family RA13_03115 PF01654 Cytochrome bd terminal oxidase subunit I RA13_03120 PF02322 Cytochrome bd terminal oxidase subunit II RA13_03125 PF00005 ABC transporter RA13_03125 PF00664 ABC transporter transmembrane region RA13_03130 PF00664 ABC transporter transmembrane region RA13_03130 PF00005 ABC transporter RA13_03135 PF01256 Carbohydrate kinase RA13_03140 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RA13_03145 PF08281 Sigma-70, region 4 RA13_03145 PF04542 Sigma-70 region 2 RA13_03150 PF17280 Family of unknown function (DUF5345) RA13_03160 PF13396 Phospholipase_D-nuclease N-terminal RA13_03165 PF00005 ABC transporter RA13_03165 PF13732 Domain of unknown function (DUF4162) RA13_03170 PF12679 ABC-2 family transporter protein RA13_03175 PF07690 Major Facilitator Superfamily RA13_03180 PF06628 Catalase-related immune-responsive RA13_03180 PF00199 Catalase RA13_03185 PF02245 Methylpurine-DNA glycosylase (MPG) RA13_03190 PF05043 Mga helix-turn-helix domain RA13_03190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA13_03190 PF00874 PRD domain RA13_03190 PF08279 HTH domain RA13_03195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RA13_03200 PF02378 Phosphotransferase system, EIIC RA13_03205 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RA13_03210 PF02056 Family 4 glycosyl hydrolase RA13_03210 PF11975 Family 4 glycosyl hydrolase C-terminal domain RA13_03215 PF01063 Amino-transferase class IV RA13_03220 PF04914 DltD protein RA13_03225 PF00550 Phosphopantetheine attachment site RA13_03230 PF03062 MBOAT, membrane-bound O-acyltransferase family RA13_03235 PF00501 AMP-binding enzyme RA13_03235 PF13193 AMP-binding enzyme C-terminal domain RA13_03240 PF12459 D-Ala-teichoic acid biosynthesis protein RA13_03245 PF02080 TrkA-C domain RA13_03245 PF02254 TrkA-N domain RA13_03255 PF04607 Region found in RelA / SpoT proteins RA13_03260 PF00579 tRNA synthetases class I (W and Y) RA13_03260 PF01479 S4 domain RA13_03265 PF01047 MarR family RA13_03270 PF18801 response regulator aspartate phosphatase H, N terminal RA13_03275 PF02225 PA domain RA13_03275 PF04389 Peptidase family M28 RA13_03280 PF09529 Integral membrane protein (intg_mem_TP0381) RA13_03285 PF01501 Glycosyl transferase family 8 RA13_03290 PF03123 CAT RNA binding domain RA13_03290 PF00874 PRD domain RA13_03295 PF02378 Phosphotransferase system, EIIC RA13_03295 PF00367 phosphotransferase system, EIIB RA13_03310 PF02378 Phosphotransferase system, EIIC RA13_03315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_03320 PF10672 S-adenosylmethionine-dependent methyltransferase RA13_03320 PF17785 PUA-like domain RA13_03325 PF09962 Uncharacterized conserved protein (DUF2196) RA13_03355 PF00005 ABC transporter RA13_03360 PF04172 LrgB-like family RA13_03365 PF03788 LrgA family RA13_03370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_03370 PF03466 LysR substrate binding domain RA13_03375 PF02110 Hydroxyethylthiazole kinase family RA13_03380 PF02581 Thiamine monophosphate synthase RA13_03385 PF01323 DSBA-like thioredoxin domain RA13_03390 PF00474 Sodium:solute symporter family RA13_03395 PF04341 Protein of unknown function, DUF485 RA13_03410 PF08671 Anti-repressor SinI RA13_03415 PF00440 Bacterial regulatory proteins, tetR family RA13_03420 PF04138 GtrA-like protein RA13_03425 PF00288 GHMP kinases N terminal domain RA13_03425 PF10509 Galactokinase galactose-binding signature RA13_03425 PF08544 GHMP kinases C terminal RA13_03430 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RA13_03430 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RA13_03435 PF04226 Transglycosylase associated protein RA13_03440 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RA13_03440 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RA13_03445 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA13_03450 PF00510 Cytochrome c oxidase subunit III RA13_03455 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RA13_03460 PF17368 Spore morphogenesis and germination YwcE RA13_03470 PF01098 Cell cycle protein RA13_03475 PF00881 Nitroreductase family RA13_03480 PF00296 Luciferase-like monooxygenase RA13_03495 PF03123 CAT RNA binding domain RA13_03495 PF00874 PRD domain RA13_03510 PF00251 Glycosyl hydrolases family 32 N-terminal domain RA13_03510 PF08244 Glycosyl hydrolases family 32 C terminal RA13_03525 PF08543 Phosphomethylpyrimidine kinase RA13_03530 PF03551 Transcriptional regulator PadR-like family RA13_03545 PF00535 Glycosyl transferase family 2 RA13_03550 PF03167 Uracil DNA glycosylase superfamily RA13_03555 PF00171 Aldehyde dehydrogenase family RA13_03560 PF17261 Family of unknown function (DUF5327) RA13_03565 PF00860 Permease family RA13_03570 PF04241 Protein of unknown function (DUF423) RA13_03575 PF09671 Spore coat protein (Spore_GerQ) RA13_03580 PF00535 Glycosyl transferase family 2 RA13_03585 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RA13_03590 PF00583 Acetyltransferase (GNAT) family RA13_03595 PF00483 Nucleotidyl transferase RA13_03600 PF16363 GDP-mannose 4,6 dehydratase RA13_03610 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RA13_03615 PF17735 Biofilm surface layer A RA13_03620 PF07690 Major Facilitator Superfamily RA13_03625 PF07690 Major Facilitator Superfamily RA13_03635 PF01515 Phosphate acetyl/butaryl transferase RA13_03640 PF03601 Conserved hypothetical protein 698 RA13_03645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_03645 PF03466 LysR substrate binding domain RA13_03650 PF03099 Biotin/lipoate A/B protein ligase family RA13_03655 PF00892 EamA-like transporter family RA13_03665 PF07293 Protein of unknown function (DUF1450) RA13_03670 PF01966 HD domain RA13_03680 PF13520 Amino acid permease RA13_03685 PF01047 MarR family RA13_03690 PF01361 Tautomerase enzyme RA13_03695 PF02163 Peptidase family M50 RA13_03700 PF08741 YwhD family RA13_03705 PF00912 Transglycosylase RA13_03705 PF00905 Penicillin binding protein transpeptidase domain RA13_03710 PF17284 Spermidine synthase tetramerisation domain RA13_03715 PF00491 Arginase family RA13_03725 PF00005 ABC transporter RA13_03750 PF11131 Rap-phr extracellular signalling RA13_03755 PF18801 response regulator aspartate phosphatase H, N terminal RA13_03760 PF07563 Protein of unknown function (DUF1541) RA13_03790 PF09148 Domain of unknown function (DUF1934) RA13_03795 PF00750 tRNA synthetases class I (R) RA13_03795 PF03485 Arginyl tRNA synthetase N terminal domain RA13_03795 PF05746 DALR anticodon binding domain RA13_03805 PF00325 Bacterial regulatory proteins, crp family RA13_03805 PF00027 Cyclic nucleotide-binding domain RA13_03820 PF01568 Molydopterin dinucleotide binding domain RA13_03820 PF00384 Molybdopterin oxidoreductase RA13_03820 PF14710 Respiratory nitrate reductase alpha N-terminal RA13_03825 PF13247 4Fe-4S dicluster domain RA13_03825 PF14711 Respiratory nitrate reductase beta C-terminal RA13_03830 PF02613 Nitrate reductase delta subunit RA13_03835 PF02665 Nitrate reductase gamma subunit RA13_03840 PF13091 PLD-like domain RA13_03840 PF13396 Phospholipase_D-nuclease N-terminal RA13_03845 PF00005 ABC transporter RA13_03845 PF00664 ABC transporter transmembrane region RA13_03850 PF01872 RibD C-terminal domain RA13_03860 PF03851 UV-endonuclease UvdE RA13_03865 PF13091 PLD-like domain RA13_03870 PF13183 4Fe-4S dicluster domain RA13_03870 PF02754 Cysteine-rich domain RA13_03875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA13_03875 PF02770 Acyl-CoA dehydrogenase, middle domain RA13_03875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA13_03880 PF05066 HB1, ASXL, restriction endonuclease HTH domain RA13_03885 PF06418 CTP synthase N-terminus RA13_03885 PF00117 Glutamine amidotransferase class-I RA13_03890 PF10740 Domain of unknown function (DUF2529) RA13_03895 PF00072 Response regulator receiver domain RA13_03900 PF01116 Fructose-bisphosphate aldolase class-II RA13_03905 PF00923 Transaldolase/Fructose-6-phosphate aldolase RA13_03910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RA13_03915 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RA13_03920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA13_03920 PF07497 Rho termination factor, RNA-binding domain RA13_03920 PF07498 Rho termination factor, N-terminal domain RA13_03925 PF01197 Ribosomal protein L31 RA13_03930 PF00265 Thymidine kinase RA13_03935 PF00390 Malic enzyme, N-terminal domain RA13_03935 PF03949 Malic enzyme, NAD binding domain RA13_03940 PF03547 Membrane transport protein RA13_03945 PF13411 MerR HTH family regulatory protein RA13_03950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_03955 PF03462 PCRF domain RA13_03955 PF00472 RF-1 domain RA13_03960 PF17827 PrmC N-terminal domain RA13_03960 PF05175 Methyltransferase small domain RA13_03965 PF17247 Family of unknown function (DUF5316) RA13_03970 PF17094 Uncharacterised protein family (UPF0715) RA13_03975 PF09551 Stage II sporulation protein R (spore_II_R) RA13_03985 PF03481 Putative GTP-binding controlling metal-binding RA13_03985 PF01300 Telomere recombination RA13_03990 PF02659 Putative manganese efflux pump RA13_03995 PF01451 Low molecular weight phosphotyrosine protein phosphatase RA13_04000 PF02502 Ribose/Galactose Isomerase RA13_04005 PF04260 Protein of unknown function (DUF436) RA13_04010 PF00464 Serine hydroxymethyltransferase RA13_04020 PF03899 ATP synthase I chain RA13_04025 PF00119 ATP synthase A chain RA13_04030 PF00137 ATP synthase subunit C RA13_04035 PF00430 ATP synthase B/B' CF(0) RA13_04040 PF00213 ATP synthase delta (OSCP) subunit RA13_04045 PF02874 ATP synthase alpha/beta family, beta-barrel domain RA13_04045 PF00306 ATP synthase alpha/beta chain, C terminal domain RA13_04045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA13_04050 PF00231 ATP synthase RA13_04055 PF02874 ATP synthase alpha/beta family, beta-barrel domain RA13_04055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA13_04060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RA13_04060 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RA13_04070 PF06612 Protein of unknown function (DUF1146) RA13_04075 PF08680 TATA-box binding RA13_04080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RA13_04085 PF08486 Stage II sporulation protein RA13_04095 PF00092 von Willebrand factor type A domain RA13_04100 PF00092 von Willebrand factor type A domain RA13_04110 PF02634 FdhD/NarQ family RA13_04115 PF04055 Radical SAM superfamily RA13_04115 PF06463 Molybdenum Cofactor Synthesis C RA13_04120 PF17874 MalT-like TPR region RA13_04120 PF18801 response regulator aspartate phosphatase H, N terminal RA13_04130 PF05532 CsbD-like RA13_04135 PF00547 Urease, gamma subunit RA13_04140 PF00699 Urease beta subunit RA13_04145 PF01979 Amidohydrolase family RA13_04145 PF00449 Urease alpha-subunit, N-terminal domain RA13_04150 PF02082 Transcriptional regulator RA13_04155 PF13460 NAD(P)H-binding RA13_04160 PF17319 Family of unknown function (DUF5362) RA13_04165 PF07739 TipAS antibiotic-recognition domain RA13_04165 PF13411 MerR HTH family regulatory protein RA13_04170 PF13396 Phospholipase_D-nuclease N-terminal RA13_04170 PF13091 PLD-like domain RA13_04175 PF17370 Family of unknown function (DUF5392) RA13_04180 PF03102 NeuB family RA13_04180 PF08666 SAF domain RA13_04195 PF02348 Cytidylyltransferase RA13_04200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA13_04205 PF16363 GDP-mannose 4,6 dehydratase RA13_04210 PF02719 Polysaccharide biosynthesis protein RA13_04215 PF17319 Family of unknown function (DUF5362) RA13_04220 PF00583 Acetyltransferase (GNAT) family RA13_04225 PF01551 Peptidase family M23 RA13_04230 PF04892 VanZ like family RA13_04235 PF01569 PAP2 superfamily RA13_04240 PF01098 Cell cycle protein RA13_04245 PF00543 Nitrogen regulatory protein P-II RA13_04250 PF00909 Ammonium Transporter Family RA13_04260 PF00857 Isochorismatase family RA13_04265 PF07690 Major Facilitator Superfamily RA13_04270 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RA13_04275 PF07690 Major Facilitator Superfamily RA13_04280 PF01047 MarR family RA13_04290 PF12116 Stage III sporulation protein D RA13_04300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA13_04300 PF00460 Flagella basal body rod protein RA13_04305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA13_04305 PF00460 Flagella basal body rod protein RA13_04310 PF18801 response regulator aspartate phosphatase H, N terminal RA13_04315 PF07977 FabA-like domain RA13_04320 PF01741 Large-conductance mechanosensitive channel, MscL RA13_04325 PF14183 YwpF-like protein RA13_04335 PF00436 Single-strand binding protein family RA13_04340 PF08220 DeoR-like helix-turn-helix domain RA13_04340 PF00455 DeoR C terminal sensor domain RA13_04350 PF12419 SNF2 Helicase protein RA13_04350 PF00176 SNF2 family N-terminal domain RA13_04350 PF00271 Helicase conserved C-terminal domain RA13_04355 PF04434 SWIM zinc finger RA13_04365 PF02706 Chain length determinant protein RA13_04365 PF13807 G-rich domain on putative tyrosine kinase RA13_04370 PF13614 AAA domain RA13_04380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RA13_04380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RA13_04380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RA13_04390 PF16888 Domain of unknown function (DUF5082) RA13_04400 PF04740 LXG domain of WXG superfamily RA13_04400 PF14431 YwqJ-like deaminase RA13_04400 PF14449 Pre-toxin TG RA13_04405 PF07661 MORN repeat variant RA13_04415 PF04493 Endonuclease V RA13_04435 PF03466 LysR substrate binding domain RA13_04435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_04440 PF03358 NADPH-dependent FMN reductase RA13_04450 PF02417 Chromate transporter RA13_04455 PF02417 Chromate transporter RA13_04460 PF01037 Lrp/AsnC ligand binding domain RA13_04460 PF13404 AsnC-type helix-turn-helix domain RA13_04470 PF13789 Domain of unknown function (DUF4181) RA13_04475 PF00834 Ribulose-phosphate 3 epimerase family RA13_04485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RA13_04490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA13_04495 PF01613 Flavin reductase like domain RA13_04505 PF08757 CotH kinase protein RA13_04520 PF03306 Alpha-acetolactate decarboxylase RA13_04525 PF02525 Flavodoxin-like fold RA13_04530 PF13031 Protein of unknown function (DUF3892) RA13_04535 PF08239 Bacterial SH3 domain RA13_04540 PF13407 Periplasmic binding protein domain RA13_04545 PF02653 Branched-chain amino acid transport system / permease component RA13_04550 PF00005 ABC transporter RA13_04555 PF05025 RbsD / FucU transport protein family RA13_04560 PF00294 pfkB family carbohydrate kinase RA13_04565 PF00356 Bacterial regulatory proteins, lacI family RA13_04575 PF03845 Spore germination protein RA13_04580 PF03323 Bacillus/Clostridium GerA spore germination protein RA13_04585 PF08245 Mur ligase middle domain RA13_04590 PF14102 Capsule biosynthesis CapC RA13_04595 PF09587 Bacterial capsule synthesis protein PGA_cap RA13_04605 PF00877 NlpC/P60 family RA13_04615 PF03816 Cell envelope-related transcriptional attenuator domain RA13_04620 PF00083 Sugar (and other) transporter RA13_04630 PF05504 Spore germination B3/ GerAC like, C-terminal RA13_04635 PF03845 Spore germination protein RA13_04640 PF03323 Bacillus/Clostridium GerA spore germination protein RA13_04645 PF01238 Phosphomannose isomerase type I RA13_04650 PF08239 Bacterial SH3 domain RA13_04650 PF05036 Sporulation related domain RA13_04650 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RA13_04655 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RA13_04660 PF03808 Glycosyl transferase WecB/TagA/CpsF family RA13_04665 PF01467 Cytidylyltransferase-like RA13_04670 PF00535 Glycosyl transferase family 2 RA13_04670 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 RA13_04675 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RA13_04680 PF01061 ABC-2 type transporter RA13_04685 PF00005 ABC transporter RA13_04690 PF00483 Nucleotidyl transferase RA13_04695 PF02350 UDP-N-acetylglucosamine 2-epimerase RA13_04700 PF03816 Cell envelope-related transcriptional attenuator domain RA13_04710 PF04122 Putative cell wall binding repeat 2 RA13_04710 PF08486 Stage II sporulation protein RA13_04715 PF04122 Putative cell wall binding repeat 2 RA13_04715 PF01520 N-acetylmuramoyl-L-alanine amidase RA13_04725 PF02397 Bacterial sugar transferase RA13_04735 PF00534 Glycosyl transferases group 1 RA13_04735 PF13439 Glycosyltransferase Family 4 RA13_04740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RA13_04740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RA13_04740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RA13_04745 PF04932 O-Antigen ligase RA13_04750 PF02706 Chain length determinant protein RA13_04755 PF00535 Glycosyl transferase family 2 RA13_04765 PF00953 Glycosyl transferase family 4 RA13_04770 PF03816 Cell envelope-related transcriptional attenuator domain RA13_04775 PF09186 Domain of unknown function (DUF1949) RA13_04775 PF01205 Uncharacterized protein family UPF0029 RA13_04780 PF07730 Histidine kinase RA13_04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_04780 PF05384 Sensor protein DegS RA13_04785 PF00196 Bacterial regulatory proteins, luxR family RA13_04785 PF00072 Response regulator receiver domain RA13_04790 PF02645 Uncharacterised protein, DegV family COG1307 RA13_04795 PF00271 Helicase conserved C-terminal domain RA13_04795 PF04851 Type III restriction enzyme, res subunit RA13_04800 PF10719 Late competence development protein ComFB RA13_04815 PF04316 Anti-sigma-28 factor, FlgM RA13_04820 PF05130 FlgN protein RA13_04825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA13_04825 PF00460 Flagella basal body rod protein RA13_04830 PF00669 Bacterial flagellin N-terminal helical region RA13_04830 PF00700 Bacterial flagellin C-terminal helical region RA13_04840 PF02623 FliW protein RA13_04845 PF02599 Global regulator protein family RA13_04850 PF00669 Bacterial flagellin N-terminal helical region RA13_04850 PF00700 Bacterial flagellin C-terminal helical region RA13_04855 PF03646 FlaG protein RA13_04860 PF07195 Flagellar hook-associated protein 2 C-terminus RA13_04860 PF02465 Flagellar hook-associated protein 2 N-terminus RA13_04860 PF07196 Flagellin hook IN motif RA13_04865 PF02561 Flagellar protein FliS RA13_04880 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RA13_04880 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RA13_04885 PF01043 SecA preprotein cross-linking domain RA13_04885 PF07516 SecA Wing and Scaffold domain RA13_04885 PF07517 SecA DEAD-like domain RA13_04885 PF02810 SEC-C motif RA13_04895 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RA13_04895 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RA13_04900 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RA13_04905 PF00005 ABC transporter RA13_04910 PF18075 FtsX extracellular domain RA13_04910 PF02687 FtsX-like permease family RA13_04915 PF17820 PDZ domain RA13_04915 PF03572 Peptidase family S41 RA13_04915 PF01471 Putative peptidoglycan binding domain RA13_04920 PF17423 Swarming motility protein RA13_04925 PF17820 PDZ domain RA13_04935 PF07690 Major Facilitator Superfamily RA13_04940 PF00440 Bacterial regulatory proteins, tetR family RA13_04945 PF00391 PEP-utilising enzyme, mobile domain RA13_04945 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RA13_04950 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) RA13_04960 PF17755 UvrA DNA-binding domain RA13_04960 PF00005 ABC transporter RA13_04960 PF17760 UvrA interaction domain RA13_04975 PF13349 Putative adhesin RA13_04980 PF04024 PspC domain RA13_04985 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RA13_04990 PF00149 Calcineurin-like phosphoesterase RA13_05000 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RA13_05005 PF01979 Amidohydrolase family RA13_05010 PF02603 HPr Serine kinase N terminus RA13_05010 PF07475 HPr Serine kinase C-terminal domain RA13_05015 PF01790 Prolipoprotein diacylglyceryl transferase RA13_05020 PF07670 Nucleoside recognition RA13_05025 PF13419 Haloacid dehalogenase-like hydrolase RA13_05030 PF14602 Hexapeptide repeat of succinyl-transferase RA13_05035 PF03211 Pectate lyase RA13_05040 PF13529 Peptidase_C39 like family RA13_05050 PF01634 ATP phosphoribosyltransferase RA13_05055 PF00815 Histidinol dehydrogenase RA13_05060 PF00475 Imidazoleglycerol-phosphate dehydratase RA13_05065 PF00117 Glutamine amidotransferase class-I RA13_05070 PF00977 Histidine biosynthesis protein RA13_05075 PF00977 Histidine biosynthesis protein RA13_05080 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RA13_05080 PF01502 Phosphoribosyl-AMP cyclohydrolase RA13_05085 PF00583 Acetyltransferase (GNAT) family RA13_05110 PF00877 NlpC/P60 family RA13_05115 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_05120 PF00293 NUDIX domain RA13_05125 PF03668 P-loop ATPase protein family RA13_05130 PF01933 Uncharacterised protein family UPF0052 RA13_05135 PF10298 WhiA N-terminal LAGLIDADG-like domain RA13_05135 PF14527 WhiA LAGLIDADG-like domain RA13_05135 PF02650 WhiA C-terminal HTH domain RA13_05140 PF00381 PTS HPr component phosphorylation site RA13_05145 PF00797 N-acetyltransferase RA13_05150 PF00545 ribonuclease RA13_05155 PF00072 Response regulator receiver domain RA13_05155 PF00486 Transcriptional regulatory protein, C terminal RA13_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_05165 PF00005 ABC transporter RA13_05170 PF02687 FtsX-like permease family RA13_05175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA13_05175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA13_05185 PF00916 Sulfate permease family RA13_05185 PF01740 STAS domain RA13_05190 PF03819 MazG nucleotide pyrophosphohydrolase domain RA13_05195 PF03641 Possible lysine decarboxylase RA13_05200 PF01965 DJ-1/PfpI family RA13_05205 PF00574 Clp protease RA13_05220 PF13302 Acetyltransferase (GNAT) domain RA13_05225 PF00893 Small Multidrug Resistance protein RA13_05230 PF00893 Small Multidrug Resistance protein RA13_05235 PF17934 Tetracyclin repressor-like, C-terminal domain RA13_05235 PF00440 Bacterial regulatory proteins, tetR family RA13_05250 PF02435 Levansucrase/Invertase RA13_05270 PF00005 ABC transporter RA13_05285 PF00135 Carboxylesterase family RA13_05290 PF01381 Helix-turn-helix RA13_05290 PF08671 Anti-repressor SinI RA13_05295 PF02706 Chain length determinant protein RA13_05300 PF13614 AAA domain RA13_05305 PF02719 Polysaccharide biosynthesis protein RA13_05310 PF13439 Glycosyltransferase Family 4 RA13_05310 PF00534 Glycosyl transferases group 1 RA13_05315 PF00535 Glycosyl transferase family 2 RA13_05320 PF00534 Glycosyl transferases group 1 RA13_05320 PF13439 Glycosyltransferase Family 4 RA13_05330 PF00535 Glycosyl transferase family 2 RA13_05335 PF04230 Polysaccharide pyruvyl transferase RA13_05340 PF00535 Glycosyl transferase family 2 RA13_05345 PF14667 Polysaccharide biosynthesis C-terminal domain RA13_05345 PF01943 Polysaccharide biosynthesis protein RA13_05350 PF02397 Bacterial sugar transferase RA13_05355 PF17836 PglD N-terminal domain RA13_05355 PF00132 Bacterial transferase hexapeptide (six repeats) RA13_05360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA13_05365 PF04230 Polysaccharide pyruvyl transferase RA13_05370 PF09628 YvfG protein RA13_05375 PF00309 Sigma-54 factor, Activator interacting domain (AID) RA13_05375 PF04963 Sigma-54 factor, core binding domain RA13_05375 PF04552 Sigma-54, DNA binding domain RA13_05385 PF07729 FCD domain RA13_05385 PF00392 Bacterial regulatory proteins, gntR family RA13_05390 PF07228 Stage II sporulation protein E (SpoIIE) RA13_05390 PF13426 PAS domain RA13_05395 PF02754 Cysteine-rich domain RA13_05400 PF02589 LUD domain RA13_05400 PF11870 Domain of unknown function (DUF3390) RA13_05400 PF13183 4Fe-4S dicluster domain RA13_05405 PF02589 LUD domain RA13_05415 PF00324 Amino acid permease RA13_05420 PF00892 EamA-like transporter family RA13_05425 PF03466 LysR substrate binding domain RA13_05425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_05430 PF00296 Luciferase-like monooxygenase RA13_05435 PF00392 Bacterial regulatory proteins, gntR family RA13_05440 PF00083 Sugar (and other) transporter RA13_05445 PF04198 Putative sugar-binding domain RA13_05450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RA13_05450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RA13_05455 PF00162 Phosphoglycerate kinase RA13_05460 PF00121 Triosephosphate isomerase RA13_05465 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RA13_05465 PF01676 Metalloenzyme superfamily RA13_05470 PF00113 Enolase, C-terminal TIM barrel domain RA13_05470 PF03952 Enolase, N-terminal domain RA13_05475 PF02225 PA domain RA13_05475 PF04389 Peptidase family M28 RA13_05480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RA13_05480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RA13_05480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RA13_05485 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA13_05490 PF01370 NAD dependent epimerase/dehydratase family RA13_05495 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RA13_05510 PF02585 GlcNAc-PI de-N-acetylase RA13_05525 PF00583 Acetyltransferase (GNAT) family RA13_05530 PF13240 zinc-ribbon domain RA13_05545 PF12802 MarR family RA13_05550 PF00571 CBS domain RA13_05550 PF00005 ABC transporter RA13_05555 PF00528 Binding-protein-dependent transport system inner membrane component RA13_05560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RA13_05565 PF00528 Binding-protein-dependent transport system inner membrane component RA13_05570 PF12802 MarR family RA13_05575 PF00005 ABC transporter RA13_05575 PF00571 CBS domain RA13_05585 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RA13_05590 PF00528 Binding-protein-dependent transport system inner membrane component RA13_05595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_05595 PF00672 HAMP domain RA13_05595 PF12729 Four helix bundle sensory module for signal transduction RA13_05600 PF01638 HxlR-like helix-turn-helix RA13_05615 PF01381 Helix-turn-helix RA13_05620 PF03840 Preprotein translocase SecG subunit RA13_05625 PF12146 Serine aminopeptidase, S33 RA13_05630 PF00575 S1 RNA binding domain RA13_05630 PF00773 RNB domain RA13_05630 PF08206 Ribonuclease B OB domain RA13_05630 PF17876 Cold shock domain RA13_05635 PF01668 SmpB protein RA13_05645 PF02525 Flavodoxin-like fold RA13_05650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA13_05650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA13_05655 PF02583 Metal-sensitive transcriptional repressor RA13_05660 PF00403 Heavy-metal-associated domain RA13_05665 PF00403 Heavy-metal-associated domain RA13_05670 PF00403 Heavy-metal-associated domain RA13_05675 PF13462 Thioredoxin RA13_05680 PF02600 Disulfide bond formation protein DsbB RA13_05690 PF03458 UPF0126 domain RA13_05695 PF13538 UvrD-like helicase C-terminal domain RA13_05700 PF00175 Oxidoreductase NAD-binding domain RA13_05700 PF00258 Flavodoxin RA13_05700 PF00667 FAD binding domain RA13_05705 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RA13_05705 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RA13_05715 PF00999 Sodium/hydrogen exchanger family RA13_05725 PF00248 Aldo/keto reductase family RA13_05735 PF00528 Binding-protein-dependent transport system inner membrane component RA13_05745 PF12728 Helix-turn-helix domain RA13_05745 PF12727 PBP superfamily domain RA13_05750 PF00884 Sulfatase RA13_05755 PF04307 LexA-binding, inner membrane-associated putative hydrolase RA13_05765 PF09575 Small spore protein J (Spore_SspJ) RA13_05770 PF13520 Amino acid permease RA13_05780 PF01497 Periplasmic binding protein RA13_05785 PF01032 FecCD transport family RA13_05790 PF01032 FecCD transport family RA13_05795 PF00005 ABC transporter RA13_05800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA13_05805 PF00005 ABC transporter RA13_05810 PF12704 MacB-like periplasmic core domain RA13_05810 PF02687 FtsX-like permease family RA13_05815 PF14184 Regulatory protein YrvL RA13_05820 PF00190 Cupin RA13_05825 PF12841 YvrJ protein family RA13_05830 PF04545 Sigma-70, region 4 RA13_05840 PF00072 Response regulator receiver domain RA13_05840 PF00486 Transcriptional regulatory protein, C terminal RA13_05845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_05845 PF00512 His Kinase A (phospho-acceptor) domain RA13_05850 PF08450 SMP-30/Gluconolactonase/LRE-like region RA13_05855 PF00106 short chain dehydrogenase RA13_05860 PF01497 Periplasmic binding protein RA13_05865 PF01032 FecCD transport family RA13_05870 PF00005 ABC transporter RA13_05875 PF01923 Cobalamin adenosyltransferase RA13_05880 PF07690 Major Facilitator Superfamily RA13_05890 PF04012 PspA/IM30 family RA13_05895 PF13349 Putative adhesin RA13_05900 PF09922 Cell wall-active antibiotics response 4TMS YvqF RA13_05905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_05905 PF07730 Histidine kinase RA13_05905 PF00672 HAMP domain RA13_05910 PF00196 Bacterial regulatory proteins, luxR family RA13_05910 PF00072 Response regulator receiver domain RA13_05915 PF05504 Spore germination B3/ GerAC like, C-terminal RA13_05930 PF13113 Protein of unknown function (DUF3970) RA13_05935 PF10415 Fumarase C C-terminus RA13_05935 PF00206 Lyase RA13_05940 PF00440 Bacterial regulatory proteins, tetR family RA13_05950 PF00512 His Kinase A (phospho-acceptor) domain RA13_05950 PF00672 HAMP domain RA13_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_05955 PF00072 Response regulator receiver domain RA13_05955 PF00486 Transcriptional regulatory protein, C terminal RA13_05960 PF13180 PDZ domain RA13_05965 PF00210 Ferritin-like domain RA13_05970 PF00106 short chain dehydrogenase RA13_05980 PF14039 YusW-like protein RA13_05985 PF00005 ABC transporter RA13_05990 PF10835 Protein of unknown function (DUF2573) RA13_05995 PF07690 Major Facilitator Superfamily RA13_06000 PF01047 MarR family RA13_06005 PF07875 Coat F domain RA13_06015 PF01619 Proline dehydrogenase RA13_06020 PF14115 YuzL-like protein RA13_06025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA13_06025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA13_06025 PF00378 Enoyl-CoA hydratase/isomerase RA13_06030 PF00108 Thiolase, N-terminal domain RA13_06030 PF02803 Thiolase, C-terminal domain RA13_06035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA13_06035 PF02770 Acyl-CoA dehydrogenase, middle domain RA13_06035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA13_06040 PF03960 ArsC family RA13_06045 PF01597 Glycine cleavage H-protein RA13_06050 PF10830 Protein of unknown function (DUF2553) RA13_06055 PF01751 Toprim domain RA13_06060 PF00085 Thioredoxin RA13_06065 PF02036 SCP-2 sterol transfer family RA13_06070 PF09383 NIL domain RA13_06070 PF00005 ABC transporter RA13_06075 PF00528 Binding-protein-dependent transport system inner membrane component RA13_06080 PF03180 NLPA lipoprotein RA13_06085 PF02627 Carboxymuconolactone decarboxylase family RA13_06090 PF00005 ABC transporter RA13_06095 PF01458 Uncharacterized protein family (UPF0051) RA13_06100 PF00266 Aminotransferase class-V RA13_06105 PF01592 NifU-like N terminal domain RA13_06110 PF01458 Uncharacterized protein family (UPF0051) RA13_06115 PF01266 FAD dependent oxidoreductase RA13_06120 PF01541 GIY-YIG catalytic domain RA13_06125 PF01380 SIS domain RA13_06130 PF01547 Bacterial extracellular solute-binding protein RA13_06135 PF00528 Binding-protein-dependent transport system inner membrane component RA13_06140 PF00528 Binding-protein-dependent transport system inner membrane component RA13_06145 PF00294 pfkB family carbohydrate kinase RA13_06150 PF00392 Bacterial regulatory proteins, gntR family RA13_06150 PF07702 UTRA domain RA13_06155 PF03459 TOBE domain RA13_06155 PF00005 ABC transporter RA13_06155 PF17912 MalK OB fold domain RA13_06165 PF04231 Endonuclease I RA13_06170 PF00591 Glycosyl transferase family, a/b domain RA13_06170 PF02885 Glycosyl transferase family, helical bundle domain RA13_06175 PF01546 Peptidase family M20/M25/M40 RA13_06180 PF00266 Aminotransferase class-V RA13_06195 PF07690 Major Facilitator Superfamily RA13_06210 PF00005 ABC transporter RA13_06265 PF04542 Sigma-70 region 2 RA13_06265 PF08281 Sigma-70, region 4 RA13_06275 PF07905 Purine catabolism regulatory protein-like family RA13_06275 PF17853 GGDEF-like domain RA13_06275 PF13556 PucR C-terminal helix-turn-helix domain RA13_06280 PF01979 Amidohydrolase family RA13_06295 PF01904 Protein of unknown function DUF72 RA13_06300 PF01925 Sulfite exporter TauE/SafE RA13_06305 PF02872 5'-nucleotidase, C-terminal domain RA13_06310 PF08827 Domain of unknown function (DUF1805) RA13_06315 PF09560 Sporulation protein YunB (Spo_YunB) RA13_06320 PF01551 Peptidase family M23 RA13_06325 PF04055 Radical SAM superfamily RA13_06325 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RA13_06330 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RA13_06335 PF06265 Protein of unknown function (DUF1027) RA13_06340 PF01934 Protein of unknown function DUF86 RA13_06345 PF13344 Haloacid dehalogenase-like hydrolase RA13_06350 PF04608 Phosphatidylglycerophosphatase A RA13_06360 PF03447 Homoserine dehydrogenase, NAD binding domain RA13_06360 PF01842 ACT domain RA13_06360 PF00742 Homoserine dehydrogenase RA13_06365 PF00291 Pyridoxal-phosphate dependent enzyme RA13_06370 PF08544 GHMP kinases C terminal RA13_06370 PF00288 GHMP kinases N terminal domain RA13_06375 PF00326 Prolyl oligopeptidase family RA13_06375 PF07676 WD40-like Beta Propeller Repeat RA13_06380 PF01106 NifU-like domain RA13_06385 PF07315 Protein of unknown function (DUF1462) RA13_06390 PF05870 Phenolic acid decarboxylase (PAD) RA13_06395 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_06400 PF07293 Protein of unknown function (DUF1450) RA13_06405 PF01773 Na+ dependent nucleoside transporter N-terminus RA13_06405 PF07662 Na+ dependent nucleoside transporter C-terminus RA13_06410 PF01678 Diaminopimelate epimerase RA13_06415 PF01521 Iron-sulphur cluster biosynthesis RA13_06420 PF00478 IMP dehydrogenase / GMP reductase domain RA13_06430 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_06435 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_06440 PF17302 Family of unknown function (DUF5351) RA13_06445 PF14068 Putative membrane protein RA13_06450 PF06725 3D domain RA13_06455 PF02681 Divergent PAP2 family RA13_06460 PF00883 Cytosol aminopeptidase family, catalytic domain RA13_06460 PF02789 Cytosol aminopeptidase family, N-terminal domain RA13_06465 PF13726 Na+-H+ antiporter family RA13_06465 PF03553 Na+/H+ antiporter family RA13_06470 PF02632 BioY family RA13_06475 PF00174 Oxidoreductase molybdopterin binding domain RA13_06480 PF13783 Domain of unknown function (DUF4177) RA13_06490 PF00756 Putative esterase RA13_06495 PF00106 short chain dehydrogenase RA13_06500 PF00425 chorismate binding enzyme RA13_06510 PF00550 Phosphopantetheine attachment site RA13_06510 PF00857 Isochorismatase family RA13_06515 PF13193 AMP-binding enzyme C-terminal domain RA13_06515 PF00668 Condensation domain RA13_06515 PF00501 AMP-binding enzyme RA13_06515 PF00550 Phosphopantetheine attachment site RA13_06515 PF00975 Thioesterase domain RA13_06520 PF03621 MbtH-like protein RA13_06525 PF10042 Uncharacterized conserved protein (DUF2278) RA13_06530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RA13_06530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RA13_06535 PF06018 CodY GAF-like domain RA13_06535 PF17853 GGDEF-like domain RA13_06535 PF13556 PucR C-terminal helix-turn-helix domain RA13_06540 PF06013 Proteins of 100 residues with WXG RA13_06545 PF08817 WXG100 protein secretion system (Wss), protein YukD RA13_06550 PF10140 WXG100 protein secretion system (Wss), protein YukC RA13_06555 PF01580 FtsK/SpoIIIE family RA13_06555 PF12538 DNA transporter RA13_06565 PF17355 Family of unknown function (DUF5383) RA13_06570 PF00106 short chain dehydrogenase RA13_06575 PF01966 HD domain RA13_06580 PF10842 Protein of unknown function (DUF2642) RA13_06585 PF01594 AI-2E family transporter RA13_06590 PF10676 Spore germination protein gerPA/gerPF RA13_06595 PF14166 YueH-like protein RA13_06600 PF07997 Protein of unknown function (DUF1694) RA13_06605 PF00857 Isochorismatase family RA13_06610 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RA13_06610 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain RA13_06610 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RA13_06615 PF00563 EAL domain RA13_06615 PF08668 HDOD domain RA13_06625 PF08181 DegQ (SacQ) family RA13_06630 PF00348 Polyprenyl synthetase RA13_06640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_06640 PF07730 Histidine kinase RA13_06645 PF00196 Bacterial regulatory proteins, luxR family RA13_06645 PF00072 Response regulator receiver domain RA13_06650 PF03061 Thioesterase superfamily RA13_06655 PF03334 Na+/H+ antiporter subunit RA13_06660 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RA13_06665 PF01899 Na+/H+ ion antiporter subunit RA13_06670 PF00361 Proton-conducting membrane transporter RA13_06675 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RA13_06680 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RA13_06695 PF03390 2-hydroxycarboxylate transporter family RA13_06720 PF00072 Response regulator receiver domain RA13_06725 PF00989 PAS fold RA13_06725 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RA13_06725 PF17203 Single cache domain 3 RA13_06725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_06730 PF17328 Family of unknown function (DUF5366) RA13_06735 PF04134 Protein of unknown function, DUF393 RA13_06740 PF00905 Penicillin binding protein transpeptidase domain RA13_06740 PF00912 Transglycosylase RA13_06745 PF07690 Major Facilitator Superfamily RA13_06755 PF00929 Exonuclease RA13_06760 PF08810 Kinase associated protein B RA13_06765 PF00512 His Kinase A (phospho-acceptor) domain RA13_06765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_06770 PF00155 Aminotransferase class I and II RA13_06775 PF08958 Domain of unknown function (DUF1871) RA13_06780 PF00561 alpha/beta hydrolase fold RA13_06780 PF08386 TAP-like protein RA13_06785 PF01037 Lrp/AsnC ligand binding domain RA13_06790 PF00155 Aminotransferase class I and II RA13_06795 PF00575 S1 RNA binding domain RA13_06800 PF04070 Domain of unknown function (DUF378) RA13_06805 PF00465 Iron-containing alcohol dehydrogenase RA13_06810 PF00465 Iron-containing alcohol dehydrogenase RA13_06815 PF00342 Phosphoglucose isomerase RA13_06825 PF08868 YugN-like family RA13_06830 PF07885 Ion channel RA13_06830 PF02254 TrkA-N domain RA13_06835 PF11458 Membrane-integrating protein Mistic RA13_06845 PF04298 Putative neutral zinc metallopeptidase RA13_06850 PF00571 CBS domain RA13_06850 PF03471 Transporter associated domain RA13_06850 PF01595 Cyclin M transmembrane N-terminal domain RA13_06860 PF01894 Uncharacterised protein family UPF0047 RA13_06865 PF03060 Nitronate monooxygenase RA13_06880 PF00672 HAMP domain RA13_06880 PF02743 Cache domain RA13_06880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_06885 PF02743 Cache domain RA13_06885 PF00672 HAMP domain RA13_06885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_06890 PF02743 Cache domain RA13_06890 PF00672 HAMP domain RA13_06890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_06895 PF02743 Cache domain RA13_06895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_06895 PF00672 HAMP domain RA13_06900 PF00596 Class II Aldolase and Adducin N-terminal domain RA13_06905 PF08220 DeoR-like helix-turn-helix domain RA13_06905 PF00455 DeoR C terminal sensor domain RA13_06910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RA13_06910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RA13_06915 PF05336 L-rhamnose mutarotase RA13_06920 PF06134 L-rhamnose isomerase (RhaA) RA13_06925 PF01965 DJ-1/PfpI family RA13_06930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA13_06930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA13_06935 PF01594 AI-2E family transporter RA13_06965 PF14470 Bacterial PH domain RA13_06995 PF12671 Putative amidase domain RA13_07020 PF07690 Major Facilitator Superfamily RA13_07025 PF13457 GW (Gly-Tryp) dipeptide domain RA13_07025 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RA13_07035 PF02386 Cation transport protein RA13_07040 PF02254 TrkA-N domain RA13_07040 PF02080 TrkA-C domain RA13_07045 PF17735 Biofilm surface layer A RA13_07065 PF00465 Iron-containing alcohol dehydrogenase RA13_07075 PF12867 DinB superfamily RA13_07085 PF15975 Flotillin RA13_07085 PF01145 SPFH domain / Band 7 family RA13_07095 PF04203 Sortase domain RA13_07100 PF09515 Thiamine transporter protein (Thia_YuaJ) RA13_07225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RA13_07225 PF02806 Alpha amylase, C-terminal all-beta domain RA13_07225 PF00128 Alpha amylase, catalytic domain RA13_07230 PF00483 Nucleotidyl transferase RA13_07235 PF00483 Nucleotidyl transferase RA13_07240 PF00534 Glycosyl transferases group 1 RA13_07240 PF08323 Starch synthase catalytic domain RA13_07245 PF00343 Carbohydrate phosphorylase RA13_07250 PF03073 TspO/MBR family RA13_07255 PF01636 Phosphotransferase enzyme family RA13_07260 PF00534 Glycosyl transferases group 1 RA13_07260 PF13439 Glycosyltransferase Family 4 RA13_07275 PF13439 Glycosyltransferase Family 4 RA13_07275 PF00534 Glycosyl transferases group 1 RA13_07280 PF01370 NAD dependent epimerase/dehydratase family RA13_07290 PF01258 Prokaryotic dksA/traR C4-type zinc finger RA13_07295 PF00425 chorismate binding enzyme RA13_07300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA13_07300 PF16582 Middle domain of thiamine pyrophosphate RA13_07300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA13_07305 PF00561 alpha/beta hydrolase fold RA13_07310 PF00378 Enoyl-CoA hydratase/isomerase RA13_07315 PF00501 AMP-binding enzyme RA13_07315 PF13193 AMP-binding enzyme C-terminal domain RA13_07320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA13_07320 PF13378 Enolase C-terminal domain-like RA13_07325 PF01297 Zinc-uptake complex component A periplasmic RA13_07330 PF00005 ABC transporter RA13_07335 PF00950 ABC 3 transport family RA13_07340 PF00950 ABC 3 transport family RA13_07345 PF03330 Lytic transglycolase RA13_07350 PF07561 Domain of Unknown Function (DUF1540) RA13_07355 PF02322 Cytochrome bd terminal oxidase subunit II RA13_07360 PF01654 Cytochrome bd terminal oxidase subunit I RA13_07365 PF01197 Ribosomal protein L31 RA13_07370 PF02492 CobW/HypB/UreG, nucleotide-binding domain RA13_07370 PF07683 Cobalamin synthesis protein cobW C-terminal domain RA13_07375 PF00484 Carbonic anhydrase RA13_07380 PF01809 Putative membrane protein insertion efficiency factor RA13_07385 PF02664 S-Ribosylhomocysteinase (LuxS) RA13_07390 PF13115 YtkA-like RA13_07400 PF00210 Ferritin-like domain RA13_07405 PF05105 Bacteriophage holin family RA13_07415 PF00293 NUDIX domain RA13_07420 PF00528 Binding-protein-dependent transport system inner membrane component RA13_07425 PF00005 ABC transporter RA13_07435 PF00326 Prolyl oligopeptidase family RA13_07440 PF10763 Protein of unknown function (DUF2584) RA13_07445 PF01293 Phosphoenolpyruvate carboxykinase RA13_07450 PF02772 S-adenosylmethionine synthetase, central domain RA13_07450 PF00438 S-adenosylmethionine synthetase, N-terminal domain RA13_07450 PF02773 S-adenosylmethionine synthetase, C-terminal domain RA13_07455 PF00733 Asparagine synthase RA13_07455 PF13537 Glutamine amidotransferase domain RA13_07460 PF00324 Amino acid permease RA13_07465 PF00132 Bacterial transferase hexapeptide (six repeats) RA13_07470 PF12146 Serine aminopeptidase, S33 RA13_07475 PF10776 Protein of unknown function (DUF2600) RA13_07480 PF06962 Putative rRNA methylase RA13_07490 PF10732 Protein of unknown function (DUF2524) RA13_07495 PF00392 Bacterial regulatory proteins, gntR family RA13_07500 PF00005 ABC transporter RA13_07510 PF00005 ABC transporter RA13_07515 PF12704 MacB-like periplasmic core domain RA13_07515 PF02687 FtsX-like permease family RA13_07520 PF00072 Response regulator receiver domain RA13_07520 PF00486 Transcriptional regulatory protein, C terminal RA13_07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_07530 PF00005 ABC transporter RA13_07535 PF02687 FtsX-like permease family RA13_07540 PF04791 LMBR1-like membrane protein RA13_07545 PF07690 Major Facilitator Superfamily RA13_07550 PF13426 PAS domain RA13_07550 PF01740 STAS domain RA13_07560 PF13603 Leucyl-tRNA synthetase, Domain 2 RA13_07560 PF00133 tRNA synthetases class I (I, L, M and V) RA13_07560 PF08264 Anticodon-binding domain of tRNA RA13_07560 PF09334 tRNA synthetases class I (M) RA13_07565 PF00581 Rhodanese-like domain RA13_07575 PF01738 Dienelactone hydrolase family RA13_07580 PF03744 6-carboxyhexanoate--CoA ligase RA13_07585 PF00202 Aminotransferase class-III RA13_07590 PF00155 Aminotransferase class I and II RA13_07600 PF04055 Radical SAM superfamily RA13_07600 PF06968 Biotin and Thiamin Synthesis associated domain RA13_07605 PF00067 Cytochrome P450 RA13_07610 PF01370 NAD dependent epimerase/dehydratase family RA13_07615 PF00528 Binding-protein-dependent transport system inner membrane component RA13_07620 PF13416 Bacterial extracellular solute-binding protein RA13_07625 PF12833 Helix-turn-helix domain RA13_07625 PF17853 GGDEF-like domain RA13_07630 PF00528 Binding-protein-dependent transport system inner membrane component RA13_07635 PF07470 Glycosyl Hydrolase Family 88 RA13_07645 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA13_07645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA13_07650 PF04854 Protein of unknown function, DUF624 RA13_07655 PF10957 Sporulation protein Cse60 RA13_07660 PF02028 BCCT, betaine/carnitine/choline family transporter RA13_07670 PF01943 Polysaccharide biosynthesis protein RA13_07670 PF14667 Polysaccharide biosynthesis C-terminal domain RA13_07675 PF01479 S4 domain RA13_07675 PF00849 RNA pseudouridylate synthase RA13_07680 PF08220 DeoR-like helix-turn-helix domain RA13_07685 PF00860 Permease family RA13_07690 PF01546 Peptidase family M20/M25/M40 RA13_07695 PF00291 Pyridoxal-phosphate dependent enzyme RA13_07710 PF00781 Diacylglycerol kinase catalytic domain RA13_07715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RA13_07715 PF00128 Alpha amylase, catalytic domain RA13_07715 PF17999 Pullulanase N1-terminal domain RA13_07720 PF01636 Phosphotransferase enzyme family RA13_07725 PF14165 YtzH-like protein RA13_07730 PF02390 Putative methyltransferase RA13_07735 PF00753 Metallo-beta-lactamase superfamily RA13_07740 PF00390 Malic enzyme, N-terminal domain RA13_07740 PF03949 Malic enzyme, NAD binding domain RA13_07745 PF03413 Peptidase propeptide and YPEB domain RA13_07755 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ RA13_07760 PF00085 Thioredoxin RA13_07765 PF07285 Protein of unknown function (DUF1444) RA13_07770 PF01588 Putative tRNA binding domain RA13_07770 PF14794 Domain of unknown function (DUF4479) RA13_07775 PF01580 FtsK/SpoIIIE family RA13_07775 PF09397 Ftsk gamma domain RA13_07775 PF17854 FtsK alpha domain RA13_07780 PF01225 Mur ligase family, catalytic domain RA13_07780 PF02875 Mur ligase family, glutamate ligase domain RA13_07780 PF08245 Mur ligase middle domain RA13_07785 PF06103 Bacterial protein of unknown function (DUF948) RA13_07790 PF12732 YtxH-like protein RA13_07795 PF11009 Protein of unknown function (DUF2847) RA13_07800 PF00793 DAHP synthetase I family RA13_07800 PF01817 Chorismate mutase type II RA13_07805 PF00356 Bacterial regulatory proteins, lacI family RA13_07810 PF01618 MotA/TolQ/ExbB proton channel family RA13_07815 PF13677 Membrane MotB of proton-channel complex MotA/MotB RA13_07815 PF00691 OmpA family RA13_07820 PF00850 Histone deacetylase domain RA13_07825 PF00571 CBS domain RA13_07830 PF00583 Acetyltransferase (GNAT) family RA13_07835 PF00501 AMP-binding enzyme RA13_07835 PF13193 AMP-binding enzyme C-terminal domain RA13_07845 PF00579 tRNA synthetases class I (W and Y) RA13_07845 PF01479 S4 domain RA13_07850 PF03466 LysR substrate binding domain RA13_07850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_07865 PF01738 Dienelactone hydrolase family RA13_07875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_07880 PF07681 DoxX RA13_07890 PF01047 MarR family RA13_07900 PF00857 Isochorismatase family RA13_07920 PF01479 S4 domain RA13_07920 PF00163 Ribosomal protein S4/S9 N-terminal domain RA13_07925 PF00990 Diguanylate cyclase, GGDEF domain RA13_07930 PF13185 GAF domain RA13_07935 PF00440 Bacterial regulatory proteins, tetR family RA13_07940 PF02811 PHP domain RA13_07945 PF06160 Septation ring formation regulator, EzrA RA13_07950 PF05525 Branched-chain amino acid transport protein RA13_07955 PF00266 Aminotransferase class-V RA13_07960 PF02926 THUMP domain RA13_07960 PF02568 Thiamine biosynthesis protein (ThiI) RA13_07965 PF00269 Small, acid-soluble spore proteins, alpha/beta type RA13_07970 PF13193 AMP-binding enzyme C-terminal domain RA13_07970 PF00501 AMP-binding enzyme RA13_07975 PF07969 Amidohydrolase family RA13_07980 PF01513 ATP-NAD kinase RA13_07985 PF01343 Peptidase family S49 RA13_07990 PF06271 RDD family RA13_07995 PF11167 Protein of unknown function (DUF2953) RA13_08000 PF09579 Sporulation protein YtfJ (Spore_YtfJ) RA13_08005 PF08534 Redoxin RA13_08010 PF02384 N-6 DNA Methylase RA13_08015 PF00871 Acetokinase family RA13_08020 PF00994 Probable molybdopterin binding domain RA13_08025 PF00764 Arginosuccinate synthase RA13_08030 PF14698 Argininosuccinate lyase C-terminal RA13_08030 PF00206 Lyase RA13_08050 PF07085 DRTGG domain RA13_08050 PF03061 Thioesterase superfamily RA13_08050 PF00571 CBS domain RA13_08050 PF00392 Bacterial regulatory proteins, gntR family RA13_08055 PF14007 YtpI-like protein RA13_08060 PF02272 DHHA1 domain RA13_08060 PF01368 DHH family RA13_08075 PF14034 Sporulation protein YtrH RA13_08085 PF00390 Malic enzyme, N-terminal domain RA13_08085 PF03949 Malic enzyme, NAD binding domain RA13_08090 PF01039 Carboxyl transferase domain RA13_08090 PF17848 Acetyl-coA carboxylase zinc finger domain RA13_08095 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RA13_08100 PF00365 Phosphofructokinase RA13_08105 PF02887 Pyruvate kinase, alpha/beta domain RA13_08105 PF00224 Pyruvate kinase, barrel domain RA13_08105 PF00391 PEP-utilising enzyme, mobile domain RA13_08110 PF04186 FxsA cytoplasmic membrane protein RA13_08115 PF01594 AI-2E family transporter RA13_08120 PF04284 Protein of unknown function (DUF441) RA13_08125 PF00285 Citrate synthase, C-terminal domain RA13_08130 PF00180 Isocitrate/isopropylmalate dehydrogenase RA13_08135 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RA13_08135 PF00056 lactate/malate dehydrogenase, NAD binding domain RA13_08140 PF00486 Transcriptional regulatory protein, C terminal RA13_08140 PF00072 Response regulator receiver domain RA13_08145 PF00989 PAS fold RA13_08145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_08145 PF00512 His Kinase A (phospho-acceptor) domain RA13_08145 PF16736 Single Cache-like RA13_08150 PF00476 DNA polymerase family A RA13_08150 PF01367 5'-3' exonuclease, C-terminal SAM fold RA13_08150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RA13_08155 PF06827 Zinc finger found in FPG and IleRS RA13_08155 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RA13_08155 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RA13_08160 PF02659 Putative manganese efflux pump RA13_08165 PF01121 Dephospho-CoA kinase RA13_08170 PF00248 Aldo/keto reductase family RA13_08175 PF07690 Major Facilitator Superfamily RA13_08180 PF01638 HxlR-like helix-turn-helix RA13_08185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RA13_08185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RA13_08190 PF02675 S-adenosylmethionine decarboxylase RA13_08195 PF03477 ATP cone domain RA13_08200 PF07261 Replication initiation and membrane attachment RA13_08205 PF07319 Primosomal protein DnaI N-terminus RA13_08205 PF01695 IstB-like ATP binding protein RA13_08210 PF09335 SNARE associated Golgi protein RA13_08215 PF08812 YtxC-like family RA13_08220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RA13_08220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RA13_08220 PF02824 TGS domain RA13_08220 PF03129 Anticodon binding domain RA13_08230 PF06580 Histidine kinase RA13_08230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_08230 PF07694 5TMR of 5TMR-LYT RA13_08235 PF04397 LytTr DNA-binding domain RA13_08235 PF00072 Response regulator receiver domain RA13_08240 PF03788 LrgA family RA13_08245 PF04172 LrgB-like family RA13_08265 PF00707 Translation initiation factor IF-3, C-terminal domain RA13_08265 PF05198 Translation initiation factor IF-3, N-terminal domain RA13_08270 PF01632 Ribosomal protein L35 RA13_08275 PF00453 Ribosomal protein L20 RA13_08280 PF06961 Protein of unknown function (DUF1294) RA13_08290 PF05343 M42 glutamyl aminopeptidase RA13_08295 PF04616 Glycosyl hydrolases family 43 RA13_08305 PF01425 Amidase RA13_08315 PF00753 Metallo-beta-lactamase superfamily RA13_08320 PF11762 L-arabinose isomerase C-terminal domain RA13_08320 PF02610 L-arabinose isomerase RA13_08325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RA13_08325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RA13_08330 PF00596 Class II Aldolase and Adducin N-terminal domain RA13_08335 PF13344 Haloacid dehalogenase-like hydrolase RA13_08340 PF13685 Iron-containing alcohol dehydrogenase RA13_08345 PF01547 Bacterial extracellular solute-binding protein RA13_08350 PF00528 Binding-protein-dependent transport system inner membrane component RA13_08355 PF00528 Binding-protein-dependent transport system inner membrane component RA13_08360 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RA13_08365 PF02554 Carbon starvation protein CstA RA13_08365 PF13722 5TM C-terminal transporter carbon starvation CstA RA13_08370 PF12681 Glyoxalase-like domain RA13_08375 PF02754 Cysteine-rich domain RA13_08375 PF13183 4Fe-4S dicluster domain RA13_08380 PF01565 FAD binding domain RA13_08380 PF02913 FAD linked oxidases, C-terminal domain RA13_08385 PF17853 GGDEF-like domain RA13_08385 PF13556 PucR C-terminal helix-turn-helix domain RA13_08385 PF05651 Putative sugar diacid recognition RA13_08390 PF14098 Small, acid-soluble spore protein I RA13_08395 PF08032 RNA 2'-O ribose methyltransferase substrate binding RA13_08395 PF00588 SpoU rRNA Methylase family RA13_08400 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RA13_08400 PF01409 tRNA synthetases class II core domain (F) RA13_08405 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RA13_08405 PF01588 Putative tRNA binding domain RA13_08405 PF03147 Ferredoxin-fold anticodon binding domain RA13_08405 PF03484 tRNA synthetase B5 domain RA13_08405 PF03483 B3/4 domain RA13_08415 PF05164 Cell division protein ZapA RA13_08420 PF02674 Colicin V production protein RA13_08425 PF02811 PHP domain RA13_08425 PF14716 Helix-hairpin-helix domain RA13_08425 PF14791 DNA polymerase beta thumb RA13_08430 PF00488 MutS domain V RA13_08430 PF01713 Smr domain RA13_08435 PF03994 Domain of Unknown Function (DUF350) RA13_08445 PF13193 AMP-binding enzyme C-terminal domain RA13_08445 PF00501 AMP-binding enzyme RA13_08450 PF00440 Bacterial regulatory proteins, tetR family RA13_08450 PF08359 YsiA-like protein, C-terminal region RA13_08455 PF00378 Enoyl-CoA hydratase/isomerase RA13_08460 PF01012 Electron transfer flavoprotein domain RA13_08465 PF01012 Electron transfer flavoprotein domain RA13_08465 PF00766 Electron transfer flavoprotein FAD-binding domain RA13_08470 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RA13_08475 PF00085 Thioredoxin RA13_08480 PF01541 GIY-YIG catalytic domain RA13_08480 PF02151 UvrB/uvrC motif RA13_08480 PF08459 UvrC Helix-hairpin-helix N-terminal RA13_08485 PF00696 Amino acid kinase family RA13_08485 PF01842 ACT domain RA13_08485 PF13840 ACT domain RA13_08490 PF10702 Protein of unknown function (DUF2507) RA13_08495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RA13_08500 PF00890 FAD binding domain RA13_08500 PF02910 Fumarate reductase flavoprotein C-term RA13_08510 PF03061 Thioesterase superfamily RA13_08515 PF00196 Bacterial regulatory proteins, luxR family RA13_08520 PF01047 MarR family RA13_08525 PF01177 Asp/Glu/Hydantoin racemase RA13_08530 PF10646 Sporulation and spore germination RA13_08535 PF03725 3' exoribonuclease family, domain 2 RA13_08535 PF01138 3' exoribonuclease family, domain 1 RA13_08540 PF01725 Ham1 family RA13_08545 PF12850 Calcineurin-like phosphoesterase superfamily domain RA13_08555 PF09557 Domain of unknown function (DUF2382) RA13_08555 PF11181 Heat induced stress protein YflT RA13_08560 PF00583 Acetyltransferase (GNAT) family RA13_08575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA13_08575 PF00205 Thiamine pyrophosphate enzyme, central domain RA13_08575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA13_08580 PF10369 Small subunit of acetolactate synthase RA13_08580 PF01842 ACT domain RA13_08585 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RA13_08585 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RA13_08590 PF08502 LeuA allosteric (dimerisation) domain RA13_08590 PF00682 HMGL-like RA13_08595 PF00180 Isocitrate/isopropylmalate dehydrogenase RA13_08600 PF00330 Aconitase family (aconitate hydratase) RA13_08605 PF00694 Aconitase C-terminal domain RA13_08615 PF05698 Bacterial trigger factor protein (TF) C-terminus RA13_08615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RA13_08615 PF05697 Bacterial trigger factor protein (TF) RA13_08620 PF10431 C-terminal, D2-small domain, of ClpB protein RA13_08620 PF07724 AAA domain (Cdc48 subfamily) RA13_08620 PF06689 ClpX C4-type zinc finger RA13_08630 PF02190 ATP-dependent protease La (LON) substrate-binding domain RA13_08630 PF05362 Lon protease (S16) C-terminal proteolytic domain RA13_08630 PF00004 ATPase family associated with various cellular activities (AAA) RA13_08645 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RA13_08645 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RA13_08645 PF01488 Shikimate / quinate 5-dehydrogenase RA13_08650 PF01578 Cytochrome C assembly protein RA13_08655 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RA13_08655 PF03900 Porphobilinogen deaminase, C-terminal domain RA13_08660 PF02602 Uroporphyrinogen-III synthase HemD RA13_08665 PF00490 Delta-aminolevulinic acid dehydratase RA13_08670 PF00202 Aminotransferase class-III RA13_08675 PF01476 LysM domain RA13_08690 PF10458 Valyl tRNA synthetase tRNA binding arm RA13_08690 PF00133 tRNA synthetases class I (I, L, M and V) RA13_08690 PF08264 Anticodon-binding domain of tRNA RA13_08695 PF08245 Mur ligase middle domain RA13_08695 PF02875 Mur ligase family, glutamate ligase domain RA13_08700 PF01478 Type IV leader peptidase family RA13_08700 PF06750 Bacterial Peptidase A24 N-terminal domain RA13_08705 PF05036 Sporulation related domain RA13_08710 PF02545 Maf-like protein RA13_08715 PF04002 RadC-like JAB domain RA13_08715 PF00633 Helix-hairpin-helix motif RA13_08725 PF04085 rod shape-determining protein MreC RA13_08730 PF04093 rod shape-determining protein MreD RA13_08735 PF03775 Septum formation inhibitor MinC, C-terminal domain RA13_08740 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RA13_08745 PF01551 Peptidase family M23 RA13_08750 PF02163 Peptidase family M50 RA13_08755 PF00829 Ribosomal prokaryotic L21 protein RA13_08760 PF04327 Cysteine protease Prp RA13_08765 PF01016 Ribosomal L27 protein RA13_08770 PF14682 Sporulation initiation phospho-transferase B, C-terminal RA13_08770 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RA13_08775 PF09269 Domain of unknown function (DUF1967) RA13_08775 PF01018 GTP1/OBG RA13_08775 PF01926 50S ribosome-binding GTPase RA13_08785 PF01842 ACT domain RA13_08785 PF00800 Prephenate dehydratase RA13_08790 PF02829 3H domain RA13_08790 PF08279 HTH domain RA13_08795 PF00266 Aminotransferase class-V RA13_08800 PF00890 FAD binding domain RA13_08800 PF02910 Fumarate reductase flavoprotein C-term RA13_08805 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RA13_08805 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RA13_08810 PF02445 Quinolinate synthetase A protein RA13_08815 PF01476 LysM domain RA13_08820 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RA13_08830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RA13_08835 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RA13_08840 PF02378 Phosphotransferase system, EIIC RA13_08845 PF02056 Family 4 glycosyl hydrolase RA13_08845 PF11975 Family 4 glycosyl hydrolase C-terminal domain RA13_08855 PF04794 YdjC-like protein RA13_08860 PF00041 Fibronectin type III domain RA13_08860 PF00704 Glycosyl hydrolases family 18 RA13_08865 PF06483 Chitinase C RA13_08865 PF00704 Glycosyl hydrolases family 18 RA13_08875 PF01709 Transcriptional regulator RA13_08900 PF07690 Major Facilitator Superfamily RA13_08905 PF08977 Bypass of Forespore C, N terminal RA13_08905 PF08955 BofC C-terminal domain RA13_08910 PF07499 RuvA, C-terminal domain RA13_08910 PF01330 RuvA N terminal domain RA13_08915 PF05491 RuvB C-terminal winged helix domain RA13_08915 PF05496 Holliday junction DNA helicase RuvB P-loop domain RA13_08915 PF17864 RuvB AAA lid domain RA13_08920 PF11146 Protein of unknown function (DUF2905) RA13_08925 PF02547 Queuosine biosynthesis protein RA13_08930 PF01702 Queuine tRNA-ribosyltransferase RA13_08935 PF02699 Preprotein translocase subunit RA13_08940 PF12670 Protein of unknown function (DUF3792) RA13_08945 PF04239 Protein of unknown function (DUF421) RA13_08950 PF01943 Polysaccharide biosynthesis protein RA13_08950 PF14667 Polysaccharide biosynthesis C-terminal domain RA13_08955 PF13797 Post-transcriptional regulator RA13_08960 PF07549 SecD/SecF GG Motif RA13_08960 PF02355 Protein export membrane protein RA13_08965 PF02080 TrkA-C domain RA13_08970 PF06305 Lipopolysaccharide assembly protein A domain RA13_08975 PF17768 RecJ OB domain RA13_08975 PF02272 DHHA1 domain RA13_08975 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RA13_08975 PF01368 DHH family RA13_08980 PF00156 Phosphoribosyl transferase domain RA13_08990 PF02580 D-Tyr-tRNA(Tyr) deacylase RA13_08995 PF01520 N-acetylmuramoyl-L-alanine amidase RA13_08995 PF08239 Bacterial SH3 domain RA13_09000 PF17449 Uncharacterized YrzK-like RA13_09005 PF03129 Anticodon binding domain RA13_09005 PF13393 Histidyl-tRNA synthetase RA13_09010 PF01336 OB-fold nucleic acid binding domain RA13_09010 PF00152 tRNA synthetases class II (D, K and N) RA13_09010 PF02938 GAD domain RA13_09020 PF00899 ThiF family RA13_09025 PF16193 AAA C-terminal domain RA13_09025 PF12002 MgsA AAA+ ATPase C terminal RA13_09025 PF05496 Holliday junction DNA helicase RuvB P-loop domain RA13_09030 PF02082 Transcriptional regulator RA13_09035 PF00266 Aminotransferase class-V RA13_09045 PF13181 Tetratricopeptide repeat RA13_09045 PF07719 Tetratricopeptide repeat RA13_09050 PF13538 UvrD-like helicase C-terminal domain RA13_09050 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain RA13_09050 PF14490 Helix-hairpin-helix containing domain RA13_09055 PF05239 PRC-barrel domain RA13_09065 PF13056 Protein of unknown function (DUF3918) RA13_09070 PF00528 Binding-protein-dependent transport system inner membrane component RA13_09075 PF00528 Binding-protein-dependent transport system inner membrane component RA13_09080 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA13_09085 PF00005 ABC transporter RA13_09090 PF01594 AI-2E family transporter RA13_09095 PF01411 tRNA synthetases class II (A) RA13_09095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RA13_09095 PF02272 DHHA1 domain RA13_09100 PF06135 IreB regulatory phosphoprotein RA13_09105 PF03652 Holliday junction resolvase RA13_09110 PF06949 Protein of unknown function (DUF1292) RA13_09115 PF02618 YceG-like family RA13_09135 PF00485 Phosphoribulokinase / Uridine kinase family RA13_09140 PF01272 Transcription elongation factor, GreA/GreB, C-term RA13_09140 PF03449 Transcription elongation factor, N-terminal RA13_09150 PF07423 Domain of unknown function (DUF1510) RA13_09155 PF10750 Protein of unknown function (DUF2536) RA13_09160 PF13649 Methyltransferase domain RA13_09165 PF01048 Phosphorylase superfamily RA13_09170 PF00291 Pyridoxal-phosphate dependent enzyme RA13_09175 PF01053 Cys/Met metabolism PLP-dependent enzyme RA13_09180 PF14143 YrhC-like protein RA13_09185 PF07849 Protein of unknown function (DUF1641) RA13_09190 PF00037 4Fe-4S binding domain RA13_09190 PF00384 Molybdopterin oxidoreductase RA13_09190 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RA13_09190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA13_09190 PF01568 Molydopterin dinucleotide binding domain RA13_09195 PF10057 Uncharacterized conserved protein (DUF2294) RA13_09205 PF01226 Formate/nitrite transporter RA13_09210 PF09501 Probable sporulation protein (Bac_small_yrzI) RA13_09215 PF08241 Methyltransferase domain RA13_09220 PF16295 Tetracyclin repressor-like, C-terminal domain RA13_09220 PF00440 Bacterial regulatory proteins, tetR family RA13_09225 PF00175 Oxidoreductase NAD-binding domain RA13_09225 PF00258 Flavodoxin RA13_09225 PF00667 FAD binding domain RA13_09225 PF00067 Cytochrome P450 RA13_09230 PF00929 Exonuclease RA13_09230 PF02811 PHP domain RA13_09230 PF14579 Helix-hairpin-helix motif RA13_09230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RA13_09230 PF07733 Bacterial DNA polymerase III alpha NTPase domain RA13_09230 PF11490 DNA polymerase III polC-type N-terminus II RA13_09235 PF07690 Major Facilitator Superfamily RA13_09240 PF03466 LysR substrate binding domain RA13_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_09245 PF14145 YrhK-like protein RA13_09255 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment RA13_09260 PF04542 Sigma-70 region 2 RA13_09260 PF04545 Sigma-70, region 4 RA13_09270 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA13_09270 PF02558 Ketopantoate reductase PanE/ApbA RA13_09275 PF06314 Acetoacetate decarboxylase (ADC) RA13_09280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_09280 PF03466 LysR substrate binding domain RA13_09295 PF00392 Bacterial regulatory proteins, gntR family RA13_09300 PF00005 ABC transporter RA13_09325 PF01337 Barstar (barnase inhibitor) RA13_09330 PF00440 Bacterial regulatory proteins, tetR family RA13_09360 PF00881 Nitroreductase family RA13_09365 PF01638 HxlR-like helix-turn-helix RA13_09390 PF13408 Recombinase zinc beta ribbon domain RA13_09390 PF07508 Recombinase RA13_09390 PF00239 Resolvase, N terminal domain RA13_09430 PF04545 Sigma-70, region 4 RA13_09430 PF04542 Sigma-70 region 2 RA13_09435 PF09335 SNARE associated Golgi protein RA13_09440 PF01980 tRNA-methyltransferase O RA13_09445 PF01522 Polysaccharide deacetylase RA13_09450 PF00657 GDSL-like Lipase/Acylhydrolase RA13_09455 PF08970 Sporulation inhibitor A RA13_09465 PF01926 50S ribosome-binding GTPase RA13_09470 PF01488 Shikimate / quinate 5-dehydrogenase RA13_09470 PF08501 Shikimate dehydrogenase substrate binding domain RA13_09470 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RA13_09475 PF01985 CRS1 / YhbY (CRM) domain RA13_09480 PF01467 Cytidylyltransferase-like RA13_09485 PF01966 HD domain RA13_09495 PF13649 Methyltransferase domain RA13_09500 PF14748 Pyrroline-5-carboxylate reductase dimerisation RA13_09500 PF03807 NADP oxidoreductase coenzyme F420-dependent RA13_09505 PF10531 SLBB domain RA13_09510 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RA13_09515 PF03772 Competence protein RA13_09515 PF13567 Domain of unknown function (DUF4131) RA13_09515 PF00753 Metallo-beta-lactamase superfamily RA13_09520 PF14141 YqzM-like protein RA13_09525 PF06144 DNA polymerase III, delta subunit RA13_09530 PF01649 Ribosomal protein S20 RA13_09535 PF03418 Germination protease RA13_09540 PF07454 Stage II sporulation protein P (SpoIIP) RA13_09545 PF12438 Protein of unknown function (DUF3679) RA13_09550 PF00679 Elongation factor G C-terminus RA13_09550 PF00009 Elongation factor Tu GTP binding domain RA13_09550 PF03144 Elongation factor Tu domain 2 RA13_09550 PF06421 GTP-binding protein LepA C-terminus RA13_09555 PF04055 Radical SAM superfamily RA13_09555 PF06969 HemN C-terminal domain RA13_09560 PF01628 HrcA protein C terminal domain RA13_09565 PF01025 GrpE RA13_09570 PF00012 Hsp70 protein RA13_09575 PF01556 DnaJ C terminal domain RA13_09575 PF00226 DnaJ domain RA13_09575 PF00684 DnaJ central domain RA13_09585 PF04452 RNA methyltransferase RA13_09590 PF04055 Radical SAM superfamily RA13_09590 PF00919 Uncharacterized protein family UPF0004 RA13_09590 PF01938 TRAM domain RA13_09595 PF02690 Na+/Pi-cotransporter RA13_09600 PF01165 Ribosomal protein S21 RA13_09605 PF09424 Yqey-like protein RA13_09615 PF12127 SigmaW regulon antibacterial RA13_09645 PF07873 YabP family RA13_09650 PF06898 Putative stage IV sporulation protein YqfD RA13_09655 PF02562 PhoH-like protein RA13_09660 PF01966 HD domain RA13_09660 PF07698 7TM receptor with intracellular HD hydrolase RA13_09660 PF07697 7TM-HD extracellular RA13_09665 PF02130 Uncharacterized protein family UPF0054 RA13_09670 PF01219 Prokaryotic diacylglycerol kinase RA13_09675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RA13_09680 PF07650 KH domain RA13_09680 PF01926 50S ribosome-binding GTPase RA13_09685 PF14006 YqzL-like protein RA13_09690 PF02565 Recombination protein O C terminal RA13_09690 PF11967 Recombination protein O N terminal RA13_09695 PF02091 Glycyl-tRNA synthetase alpha subunit RA13_09700 PF02092 Glycyl-tRNA synthetase beta subunit RA13_09705 PF00571 CBS domain RA13_09705 PF08279 HTH domain RA13_09710 PF03618 Kinase/pyrophosphorylase RA13_09715 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RA13_09720 PF08275 DNA primase catalytic core, N-terminal domain RA13_09720 PF10410 DnaB-helicase binding domain of primase RA13_09720 PF01807 CHC2 zinc finger RA13_09725 PF04545 Sigma-70, region 4 RA13_09725 PF04542 Sigma-70 region 2 RA13_09725 PF00140 Sigma-70 factor, region 1.2 RA13_09725 PF04539 Sigma-70 region 3 RA13_09725 PF03979 Sigma-70 factor, region 1.1 RA13_09730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RA13_09735 PF04816 tRNA (adenine(22)-N(1))-methyltransferase RA13_09740 PF01784 NIF3 (NGG1p interacting factor 3) RA13_09745 PF02401 LytB protein RA13_09755 PF00270 DEAD/DEAH box helicase RA13_09755 PF00271 Helicase conserved C-terminal domain RA13_09760 PF01261 Xylose isomerase-like TIM barrel RA13_09765 PF11116 Protein of unknown function (DUF2624) RA13_09770 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RA13_09770 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RA13_09775 PF01475 Ferric uptake regulator family RA13_09790 PF04551 GcpE protein RA13_09800 PF06691 Protein of unknown function (DUF1189) RA13_09805 PF04306 Protein of unknown function (DUF456) RA13_09810 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA13_09810 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RA13_09815 PF07690 Major Facilitator Superfamily RA13_09825 PF12849 PBP superfamily domain RA13_09830 PF00528 Binding-protein-dependent transport system inner membrane component RA13_09835 PF00528 Binding-protein-dependent transport system inner membrane component RA13_09840 PF00005 ABC transporter RA13_09845 PF00005 ABC transporter RA13_09865 PF00534 Glycosyl transferases group 1 RA13_09865 PF13439 Glycosyltransferase Family 4 RA13_09870 PF00471 Ribosomal protein L33 RA13_09875 PF01812 5-formyltetrahydrofolate cyclo-ligase family RA13_09885 PF01694 Rhomboid family RA13_09890 PF06014 Bacterial protein of unknown function (DUF910) RA13_09895 PF00480 ROK family RA13_09900 PF00884 Sulfatase RA13_09905 PF00246 Zinc carboxypeptidase RA13_09915 PF01910 Thiamine-binding protein RA13_09920 PF10958 Protein of unknown function (DUF2759) RA13_09925 PF00753 Metallo-beta-lactamase superfamily RA13_09930 PF11117 Protein of unknown function (DUF2626) RA13_09935 PF03960 ArsC family RA13_09945 PF01740 STAS domain RA13_09945 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain RA13_09950 PF01595 Cyclin M transmembrane N-terminal domain RA13_09950 PF00571 CBS domain RA13_09950 PF03471 Transporter associated domain RA13_09955 PF01544 CorA-like Mg2+ transporter protein RA13_09965 PF00437 Type II/IV secretion system protein RA13_09970 PF00482 Type II secretion system (T2SS), protein F RA13_09975 PF07963 Prokaryotic N-terminal methylation motif RA13_09980 PF07963 Prokaryotic N-terminal methylation motif RA13_09990 PF15980 Putative Competence protein ComGF RA13_09995 PF14173 ComG operon protein 7 RA13_10000 PF14038 YqzE-like protein RA13_10005 PF13028 Protein of unknown function (DUF3889) RA13_10020 PF12389 Camelysin metallo-endopeptidase RA13_10025 PF08671 Anti-repressor SinI RA13_10025 PF01381 Helix-turn-helix RA13_10030 PF08671 Anti-repressor SinI RA13_10035 PF11079 Bacterial protein YqhG of unknown function RA13_10040 PF00176 SNF2 family N-terminal domain RA13_10040 PF00271 Helicase conserved C-terminal domain RA13_10045 PF01571 Aminomethyltransferase folate-binding domain RA13_10045 PF08669 Glycine cleavage T-protein C-terminal barrel domain RA13_10050 PF02347 Glycine cleavage system P-protein RA13_10055 PF02347 Glycine cleavage system P-protein RA13_10060 PF00581 Rhodanese-like domain RA13_10065 PF03099 Biotin/lipoate A/B protein ligase family RA13_10070 PF02742 Iron dependent repressor, metal binding and dimerisation domain RA13_10070 PF01325 Iron dependent repressor, N-terminal DNA binding domain RA13_10085 PF07136 Protein of unknown function (DUF1385) RA13_10090 PF11085 Conserved membrane protein YqhR RA13_10095 PF01220 Dehydroquinase class II RA13_10100 PF01321 Creatinase/Prolidase N-terminal domain RA13_10100 PF00557 Metallopeptidase family M24 RA13_10105 PF09285 Elongation factor P, C-terminal RA13_10105 PF08207 Elongation factor P (EF-P) KOW-like domain RA13_10105 PF01132 Elongation factor P (EF-P) OB domain RA13_10110 PF10942 Protein of unknown function (DUF2619) RA13_10120 PF09548 Stage III sporulation protein AB (spore_III_AB) RA13_10125 PF06686 Stage III sporulation protein AC/AD protein family RA13_10130 PF06686 Stage III sporulation protein AC/AD protein family RA13_10135 PF09546 Stage III sporulation protein AE (spore_III_AE) RA13_10140 PF09581 Stage III sporulation protein AF (Spore_III_AF) RA13_10150 PF12685 SpoIIIAH-like protein RA13_10155 PF00364 Biotin-requiring enzyme RA13_10160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA13_10160 PF00289 Biotin carboxylase, N-terminal domain RA13_10160 PF02785 Biotin carboxylase C-terminal domain RA13_10165 PF03780 Asp23 family, cell envelope-related function RA13_10170 PF01029 NusB family RA13_10175 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RA13_10175 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RA13_10180 PF13742 OB-fold nucleic acid binding domain RA13_10180 PF02601 Exonuclease VII, large subunit RA13_10185 PF02609 Exonuclease VII small subunit RA13_10190 PF00348 Polyprenyl synthetase RA13_10195 PF02779 Transketolase, pyrimidine binding domain RA13_10195 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RA13_10195 PF02780 Transketolase, C-terminal domain RA13_10200 PF01479 S4 domain RA13_10200 PF01728 FtsJ-like methyltransferase RA13_10205 PF01316 Arginine repressor, DNA binding domain RA13_10205 PF02863 Arginine repressor, C-terminal domain RA13_10210 PF13476 AAA domain RA13_10215 PF17820 PDZ domain RA13_10215 PF05580 SpoIVB peptidase S55 RA13_10220 PF00072 Response regulator receiver domain RA13_10220 PF08769 Sporulation initiation factor Spo0A C terminal RA13_10230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA13_10240 PF01520 N-acetylmuramoyl-L-alanine amidase RA13_10245 PF03009 Glycerophosphoryl diester phosphodiesterase family RA13_10250 PF00108 Thiolase, N-terminal domain RA13_10250 PF02803 Thiolase, C-terminal domain RA13_10255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RA13_10255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RA13_10260 PF02770 Acyl-CoA dehydrogenase, middle domain RA13_10260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA13_10260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA13_10265 PF00285 Citrate synthase, C-terminal domain RA13_10270 PF03972 MmgE/PrpD family RA13_10290 PF01515 Phosphate acetyl/butaryl transferase RA13_10300 PF00871 Acetokinase family RA13_10310 PF00676 Dehydrogenase E1 component RA13_10315 PF02779 Transketolase, pyrimidine binding domain RA13_10315 PF02780 Transketolase, C-terminal domain RA13_10320 PF02817 e3 binding domain RA13_10320 PF00364 Biotin-requiring enzyme RA13_10320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA13_10330 PF00781 Diacylglycerol kinase catalytic domain RA13_10335 PF06491 Disulphide isomerase RA13_10340 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA13_10345 PF00528 Binding-protein-dependent transport system inner membrane component RA13_10350 PF00005 ABC transporter RA13_10355 PF11728 Putative aromatic acid exporter C-terminal domain RA13_10355 PF06081 Aromatic acid exporter family member 1 RA13_10360 PF03734 L,D-transpeptidase catalytic domain RA13_10370 PF01039 Carboxyl transferase domain RA13_10375 PF07687 Peptidase dimerisation domain RA13_10375 PF01546 Peptidase family M20/M25/M40 RA13_10380 PF09844 Uncharacterized conserved protein (COG2071) RA13_10385 PF02096 60Kd inner membrane protein RA13_10395 PF00817 impB/mucB/samB family RA13_10395 PF11798 IMS family HHH motif RA13_10395 PF11799 impB/mucB/samB family C-terminal domain RA13_10400 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RA13_10400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA13_10405 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RA13_10405 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RA13_10410 PF12706 Beta-lactamase superfamily domain RA13_10415 PF00471 Ribosomal protein L33 RA13_10420 PF12146 Serine aminopeptidase, S33 RA13_10425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RA13_10430 PF01546 Peptidase family M20/M25/M40 RA13_10435 PF03807 NADP oxidoreductase coenzyme F420-dependent RA13_10435 PF14748 Pyrroline-5-carboxylate reductase dimerisation RA13_10440 PF00753 Metallo-beta-lactamase superfamily RA13_10445 PF00106 short chain dehydrogenase RA13_10450 PF00291 Pyridoxal-phosphate dependent enzyme RA13_10455 PF00485 Phosphoribulokinase / Uridine kinase family RA13_10480 PF01594 AI-2E family transporter RA13_10485 PF14164 YqzH-like protein RA13_10490 PF11799 impB/mucB/samB family C-terminal domain RA13_10490 PF00817 impB/mucB/samB family RA13_10495 PF08863 YolD-like protein RA13_10500 PF00583 Acetyltransferase (GNAT) family RA13_10505 PF03992 Antibiotic biosynthesis monooxygenase RA13_10510 PF04229 GrpB protein RA13_10510 PF13673 Acetyltransferase (GNAT) domain RA13_10515 PF01521 Iron-sulphur cluster biosynthesis RA13_10520 PF10827 Protein of unknown function (DUF2552) RA13_10525 PF12146 Serine aminopeptidase, S33 RA13_10530 PF13025 Protein of unknown function (DUF3886) RA13_10535 PF00248 Aldo/keto reductase family RA13_10540 PF13072 Mother cell inhibitor of FtsZ RA13_10545 PF00293 NUDIX domain RA13_10555 PF01381 Helix-turn-helix RA13_10560 PF00710 Asparaginase, N-terminal RA13_10560 PF17763 Glutaminase/Asparaginase C-terminal domain RA13_10565 PF10415 Fumarase C C-terminus RA13_10565 PF00206 Lyase RA13_10570 PF03553 Na+/H+ antiporter family RA13_10575 PF00390 Malic enzyme, N-terminal domain RA13_10575 PF03949 Malic enzyme, NAD binding domain RA13_10575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA13_10585 PF01944 Stage II sporulation protein M RA13_10590 PF01475 Ferric uptake regulator family RA13_10595 PF14004 Protein of unknown function (DUF4227) RA13_10600 PF00589 Phage integrase family RA13_10600 PF02899 Phage integrase, N-terminal SAM-like domain RA13_10605 PF01676 Metalloenzyme superfamily RA13_10610 PF01048 Phosphorylase superfamily RA13_10615 PF07943 Penicillin-binding protein 5, C-terminal domain RA13_10615 PF00768 D-alanyl-D-alanine carboxypeptidase RA13_10620 PF01740 STAS domain RA13_10625 PF13581 Histidine kinase-like ATPase domain RA13_10630 PF04545 Sigma-70, region 4 RA13_10630 PF04542 Sigma-70 region 2 RA13_10630 PF04539 Sigma-70 region 3 RA13_10635 PF12164 Stage V sporulation protein AA RA13_10640 PF13782 Stage V sporulation protein AB RA13_10645 PF03862 SpoVAC/SpoVAEB sporulation membrane protein RA13_10650 PF07451 Stage V sporulation protein AD (SpoVAD) RA13_10660 PF14097 Stage V sporulation protein AE1 RA13_10665 PF03323 Bacillus/Clostridium GerA spore germination protein RA13_10670 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RA13_10670 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RA13_10675 PF06207 Protein of unknown function (DUF1002) RA13_10680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RA13_10690 PF13229 Right handed beta helix region RA13_10700 PF10787 Uncharacterised protein from bacillus cereus group RA13_10710 PF00528 Binding-protein-dependent transport system inner membrane component RA13_10715 PF00528 Binding-protein-dependent transport system inner membrane component RA13_10720 PF13416 Bacterial extracellular solute-binding protein RA13_10740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA13_10740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA13_10745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA13_10745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA13_10755 PF00313 'Cold-shock' DNA-binding domain RA13_10760 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RA13_10765 PF10502 Signal peptidase, peptidase S26 RA13_10775 PF01872 RibD C-terminal domain RA13_10775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RA13_10780 PF00677 Lumazine binding domain RA13_10785 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RA13_10785 PF00925 GTP cyclohydrolase II RA13_10790 PF00885 6,7-dimethyl-8-ribityllumazine synthase RA13_10795 PF00583 Acetyltransferase (GNAT) family RA13_10800 PF03745 Domain of unknown function (DUF309) RA13_10805 PF09680 Family of unknown function RA13_10810 PF02616 Segregation and condensation protein ScpA RA13_10815 PF04079 Segregation and condensation complex subunit ScpB RA13_10820 PF13047 Protein of unknown function (DUF3907) RA13_10825 PF00768 D-alanyl-D-alanine carboxypeptidase RA13_10825 PF07943 Penicillin-binding protein 5, C-terminal domain RA13_10830 PF07670 Nucleoside recognition RA13_10835 PF07670 Nucleoside recognition RA13_10840 PF01479 S4 domain RA13_10840 PF00849 RNA pseudouridylate synthase RA13_10845 PF00578 AhpC/TSA family RA13_10850 PF05140 ResB-like family RA13_10855 PF01578 Cytochrome C assembly protein RA13_10860 PF00486 Transcriptional regulatory protein, C terminal RA13_10860 PF00072 Response regulator receiver domain RA13_10865 PF18698 Histidine kinase sensor domain RA13_10865 PF00989 PAS fold RA13_10865 PF00672 HAMP domain RA13_10865 PF00512 His Kinase A (phospho-acceptor) domain RA13_10865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_10870 PF08281 Sigma-70, region 4 RA13_10870 PF04542 Sigma-70 region 2 RA13_10880 PF01487 Type I 3-dehydroquinase RA13_10885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA13_10885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA13_10885 PF01842 ACT domain RA13_10890 PF12822 ECF transporter, substrate-specific component RA13_10900 PF14493 Helix-turn-helix domain RA13_10905 PF00270 DEAD/DEAH box helicase RA13_10905 PF00271 Helicase conserved C-terminal domain RA13_10910 PF02517 CPBP intramembrane metalloprotease RA13_10915 PF01476 LysM domain RA13_10920 PF10864 Protein of unknown function (DUF2663) RA13_10925 PF00149 Calcineurin-like phosphoesterase RA13_10930 PF05389 Negative regulator of genetic competence (MecA) RA13_10935 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RA13_10935 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RA13_10945 PF13367 PrsW family intramembrane metalloprotease RA13_10950 PF07486 Cell Wall Hydrolase RA13_10950 PF01471 Putative peptidoglycan binding domain RA13_10955 PF14620 YpeB sporulation RA13_10955 PF03413 Peptidase propeptide and YPEB domain RA13_10960 PF07238 PilZ domain RA13_10960 PF12945 Flagellar protein YcgR RA13_10965 PF17313 Family of unknown function (DUF5359) RA13_10970 PF02224 Cytidylate kinase RA13_10975 PF00575 S1 RNA binding domain RA13_10980 PF01070 FMN-dependent dehydrogenase RA13_10985 PF14140 YpzI-like protein RA13_10995 PF14045 YIEGIA protein RA13_11005 PF01926 50S ribosome-binding GTPase RA13_11005 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RA13_11010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RA13_11010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RA13_11015 PF10966 Protein of unknown function (DUF2768) RA13_11025 PF09547 Stage IV sporulation protein A (spore_IV_A) RA13_11030 PF00216 Bacterial DNA-binding protein RA13_11035 PF01227 GTP cyclohydrolase I RA13_11040 PF02081 Tryptophan RNA-binding attenuator protein RA13_11045 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 RA13_11050 PF01209 ubiE/COQ5 methyltransferase family RA13_11055 PF00348 Polyprenyl synthetase RA13_11060 PF00334 Nucleoside diphosphate kinase RA13_11065 PF01739 CheR methyltransferase, SAM binding domain RA13_11065 PF03705 CheR methyltransferase, all-alpha domain RA13_11070 PF01264 Chorismate synthase RA13_11080 PF07736 Chorismate mutase type I RA13_11085 PF04715 Anthranilate synthase component I, N terminal region RA13_11085 PF00425 chorismate binding enzyme RA13_11095 PF00218 Indole-3-glycerol phosphate synthase RA13_11100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RA13_11105 PF00291 Pyridoxal-phosphate dependent enzyme RA13_11110 PF00290 Tryptophan synthase alpha chain RA13_11115 PF00155 Aminotransferase class I and II RA13_11120 PF01842 ACT domain RA13_11120 PF02153 Prephenate dehydrogenase RA13_11125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RA13_11135 PF08864 UPF0302 domain RA13_11135 PF08858 IDEAL domain RA13_11140 PF10673 Protein of unknown function (DUF2487) RA13_11145 PF00355 Rieske [2Fe-2S] domain RA13_11150 PF00033 Cytochrome b/b6/petB RA13_11155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RA13_11155 PF00032 Cytochrome b(C-terminal)/b6/petD RA13_11160 PF07187 Protein of unknown function (DUF1405) RA13_11170 PF00190 Cupin RA13_11175 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RA13_11175 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RA13_11180 PF03819 MazG nucleotide pyrophosphohydrolase domain RA13_11185 PF01113 Dihydrodipicolinate reductase, N-terminus RA13_11185 PF05173 Dihydrodipicolinate reductase, C-terminus RA13_11190 PF02142 MGS-like domain RA13_11195 PF02585 GlcNAc-PI de-N-acetylase RA13_11200 PF13439 Glycosyltransferase Family 4 RA13_11200 PF00534 Glycosyl transferases group 1 RA13_11205 PF01743 Poly A polymerase head domain RA13_11205 PF12627 Probable RNA and SrmB- binding site of polymerase A RA13_11205 PF13735 tRNA nucleotidyltransferase domain 2 putative RA13_11210 PF03099 Biotin/lipoate A/B protein ligase family RA13_11210 PF02237 Biotin protein ligase C terminal domain RA13_11210 PF08279 HTH domain RA13_11220 PF02548 Ketopantoate hydroxymethyltransferase RA13_11225 PF02569 Pantoate-beta-alanine ligase RA13_11230 PF02261 Aspartate decarboxylase RA13_11235 PF00929 Exonuclease RA13_11235 PF04851 Type III restriction enzyme, res subunit RA13_11235 PF13307 Helicase C-terminal domain RA13_11240 PF14084 Protein of unknown function (DUF4264) RA13_11245 PF03413 Peptidase propeptide and YPEB domain RA13_11245 PF17881 Domain of unknown function (DUF5590) RA13_11250 PF00155 Aminotransferase class I and II RA13_11255 PF01336 OB-fold nucleic acid binding domain RA13_11255 PF00152 tRNA synthetases class II (D, K and N) RA13_11260 PF07261 Replication initiation and membrane attachment RA13_11265 PF10576 Iron-sulfur binding domain of endonuclease III RA13_11265 PF00730 HhH-GPD superfamily base excision DNA repair protein RA13_11265 PF00633 Helix-hairpin-helix motif RA13_11275 PF00905 Penicillin binding protein transpeptidase domain RA13_11275 PF00912 Transglycosylase RA13_11280 PF03838 Recombination protein U RA13_11285 PF10720 Protein of unknown function (DUF2515) RA13_11295 PF17522 Family of unknown function (DUF5446) RA13_11300 PF08807 Bacterial domain of unknown function (DUF1798) RA13_11305 PF14178 YppF-like protein RA13_11310 PF14179 YppG-like protein RA13_11320 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RA13_11330 PF13482 RNase_H superfamily RA13_11335 PF11122 Inner spore coat protein D RA13_11340 PF06908 YspA SLOG family RA13_11345 PF05103 DivIVA protein RA13_11355 PF02926 THUMP domain RA13_11355 PF01170 Putative RNA methylase family UPF0020 RA13_11360 PF14139 YpzG-like protein RA13_11370 PF13307 Helicase C-terminal domain RA13_11380 PF04962 KduI/IolB family RA13_11385 PF00356 Bacterial regulatory proteins, lacI family RA13_11390 PF00294 pfkB family carbohydrate kinase RA13_11395 PF01081 KDPG and KHG aldolase RA13_11400 PF03812 2-keto-3-deoxygluconate permease RA13_11405 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RA13_11410 PF00156 Phosphoribosyl transferase domain RA13_11415 PF00860 Permease family RA13_11420 PF02797 Chalcone and stilbene synthases, C-terminal domain RA13_11420 PF00195 Chalcone and stilbene synthases, N-terminal domain RA13_11425 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family RA13_11435 PF00350 Dynamin family RA13_11440 PF10752 Protein of unknown function (DUF2533) RA13_11450 PF01367 5'-3' exonuclease, C-terminal SAM fold RA13_11450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RA13_11460 PF13456 Reverse transcriptase-like RA13_11465 PF02592 Putative vitamin uptake transporter RA13_11470 PF13456 Reverse transcriptase-like RA13_11475 PF10782 Zinc-finger RA13_11480 PF10819 Protein of unknown function (DUF2564) RA13_11490 PF00313 'Cold-shock' DNA-binding domain RA13_11495 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase RA13_11495 PF00534 Glycosyl transferases group 1 RA13_11500 PF04204 Homoserine O-succinyltransferase RA13_11510 PF01966 HD domain RA13_11515 PF13769 Virulence factor RA13_11515 PF08712 Scaffold protein Nfu/NifU N terminal RA13_11525 PF06491 Disulphide isomerase RA13_11530 PF04445 Putative SAM-dependent methyltransferase RA13_11535 PF14005 YpjP-like protein RA13_11540 PF04608 Phosphatidylglycerophosphatase A RA13_11550 PF00186 Dihydrofolate reductase RA13_11560 PF03006 Haemolysin-III related RA13_11565 PF00158 Sigma-54 interaction domain RA13_11565 PF08461 Ribonuclease R winged-helix domain RA13_11570 PF00585 C-terminal regulatory domain of Threonine dehydratase RA13_11570 PF00291 Pyridoxal-phosphate dependent enzyme RA13_11575 PF10751 Protein of unknown function (DUF2535) RA13_11580 PF02630 SCO1/SenC RA13_11585 PF13472 GDSL-like Lipase/Acylhydrolase family RA13_11590 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) RA13_11595 PF17431 Uncharacterized YmpT-like RA13_11600 PF01554 MatE RA13_11605 PF01047 MarR family RA13_11610 PF01625 Peptide methionine sulfoxide reductase RA13_11615 PF01641 SelR domain RA13_11625 PF09680 Family of unknown function RA13_11630 PF00268 Ribonucleotide reductase, small chain RA13_11635 PF06445 GyrI-like small molecule binding domain RA13_11635 PF12833 Helix-turn-helix domain RA13_11640 PF04740 LXG domain of WXG superfamily RA13_11640 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH RA13_11650 PF13443 Cro/C1-type HTH DNA-binding domain RA13_11660 PF18416 N-acetylglucosamine binding protein domain 2 RA13_11660 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RA13_11665 PF00128 Alpha amylase, catalytic domain RA13_11665 PF16738 Starch-binding module 26 RA13_11680 PF00842 Alanine racemase, C-terminal domain RA13_11680 PF01168 Alanine racemase, N-terminal domain RA13_11685 PF13495 Phage integrase, N-terminal SAM-like domain RA13_11685 PF00589 Phage integrase family RA13_11690 PF02333 Phytase RA13_11695 PF12996 DUF based on E. rectale Gene description (DUF3880) RA13_11710 PF00535 Glycosyl transferase family 2 RA13_11715 PF00583 Acetyltransferase (GNAT) family RA13_11725 PF00202 Aminotransferase class-III RA13_11730 PF01144 Coenzyme A transferase RA13_11735 PF01144 Coenzyme A transferase RA13_11740 PF01546 Peptidase family M20/M25/M40 RA13_11740 PF07687 Peptidase dimerisation domain RA13_11745 PF00583 Acetyltransferase (GNAT) family RA13_11750 PF12544 Lysine-2,3-aminomutase RA13_11755 PF14122 YokU-like protein, putative antitoxin RA13_11760 PF06855 YozE SAM-like fold RA13_11775 PF14162 YozD-like protein RA13_11780 PF01569 PAP2 superfamily RA13_11785 PF14191 YodL-like RA13_11795 PF01048 Phosphorylase superfamily RA13_11800 PF02557 D-alanyl-D-alanine carboxypeptidase RA13_11810 PF08241 Methyltransferase domain RA13_11815 PF03572 Peptidase family S41 RA13_11815 PF17820 PDZ domain RA13_11815 PF01471 Putative peptidoglycan binding domain RA13_11820 PF00474 Sodium:solute symporter family RA13_11825 PF11755 Protein of unknown function (DUF3311) RA13_11830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_11835 PF01738 Dienelactone hydrolase family RA13_11840 PF00881 Nitroreductase family RA13_11845 PF01638 HxlR-like helix-turn-helix RA13_11850 PF14552 Tautomerase enzyme RA13_11870 PF00892 EamA-like transporter family RA13_11880 PF08830 Protein of unknown function (DUF1806) RA13_11885 PF02585 GlcNAc-PI de-N-acetylase RA13_11890 PF01740 STAS domain RA13_11895 PF14659 Phage integrase, N-terminal SAM-like domain RA13_11895 PF00589 Phage integrase family RA13_11950 PF00772 DnaB-like helicase N terminal domain RA13_11950 PF03796 DnaB-like helicase C terminal domain RA13_11975 PF08281 Sigma-70, region 4 RA13_12020 PF03354 Phage Terminase RA13_12100 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RA13_12100 PF13457 GW (Gly-Tryp) dipeptide domain RA13_12105 PF12708 Pectate lyase superfamily protein RA13_12105 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain RA13_12125 PF05105 Bacteriophage holin family RA13_12130 PF01471 Putative peptidoglycan binding domain RA13_12130 PF01510 N-acetylmuramoyl-L-alanine amidase RA13_12130 PF01476 LysM domain RA13_12145 PF04634 Protein of unknown function, DUF600 RA13_12150 PF04740 LXG domain of WXG superfamily RA13_12155 PF01471 Putative peptidoglycan binding domain RA13_12155 PF01510 N-acetylmuramoyl-L-alanine amidase RA13_12175 PF01554 MatE RA13_12180 PF02457 DisA bacterial checkpoint controller nucleotide-binding RA13_12180 PF10372 Bacterial membrane-spanning protein N-terminus RA13_12190 PF00877 NlpC/P60 family RA13_12190 PF01476 LysM domain RA13_12195 PF00080 Copper/zinc superoxide dismutase (SODC) RA13_12195 PF13627 Prokaryotic lipoprotein-attachment site RA13_12200 PF07728 AAA domain (dynein-related subfamily) RA13_12205 PF00092 von Willebrand factor type A domain RA13_12210 PF16870 2-oxoglutarate dehydrogenase C-terminal RA13_12210 PF00676 Dehydrogenase E1 component RA13_12210 PF02779 Transketolase, pyrimidine binding domain RA13_12215 PF02817 e3 binding domain RA13_12215 PF00364 Biotin-requiring enzyme RA13_12215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA13_12220 PF01758 Sodium Bile acid symporter family RA13_12225 PF00209 Sodium:neurotransmitter symporter family RA13_12230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RA13_12230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RA13_12235 PF13249 Squalene-hopene cyclase N-terminal domain RA13_12235 PF13243 Squalene-hopene cyclase C-terminal domain RA13_12240 PF00171 Aldehyde dehydrogenase family RA13_12255 PF08000 Bacterial PH domain RA13_12260 PF01258 Prokaryotic dksA/traR C4-type zinc finger RA13_12265 PF02525 Flavodoxin-like fold RA13_12275 PF00271 Helicase conserved C-terminal domain RA13_12275 PF09382 RQC domain RA13_12275 PF16124 RecQ zinc-binding RA13_12275 PF00570 HRDC domain RA13_12275 PF00270 DEAD/DEAH box helicase RA13_12280 PF01476 LysM domain RA13_12280 PF06725 3D domain RA13_12285 PF00474 Sodium:solute symporter family RA13_12295 PF00072 Response regulator receiver domain RA13_12295 PF00196 Bacterial regulatory proteins, luxR family RA13_12300 PF07730 Histidine kinase RA13_12305 PF00487 Fatty acid desaturase RA13_12315 PF18846 Bacterial archaeo-eukaryotic release factor family 5 RA13_12320 PF04238 Protein of unknown function (DUF420) RA13_12330 PF01022 Bacterial regulatory protein, arsR family RA13_12345 PF06445 GyrI-like small molecule binding domain RA13_12350 PF00753 Metallo-beta-lactamase superfamily RA13_12355 PF00440 Bacterial regulatory proteins, tetR family RA13_12355 PF13305 Tetracyclin repressor-like, C-terminal domain RA13_12360 PF12833 Helix-turn-helix domain RA13_12360 PF07883 Cupin domain RA13_12365 PF01588 Putative tRNA binding domain RA13_12370 PF08361 MAATS-type transcriptional repressor, C-terminal region RA13_12370 PF00440 Bacterial regulatory proteins, tetR family RA13_12375 PF00561 alpha/beta hydrolase fold RA13_12385 PF01568 Molydopterin dinucleotide binding domain RA13_12385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA13_12385 PF00384 Molybdopterin oxidoreductase RA13_12390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RA13_12390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RA13_12395 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RA13_12395 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RA13_12400 PF07690 Major Facilitator Superfamily RA13_12405 PF05163 DinB family RA13_12410 PF06103 Bacterial protein of unknown function (DUF948) RA13_12415 PF00106 short chain dehydrogenase RA13_12425 PF01965 DJ-1/PfpI family RA13_12435 PF02801 Beta-ketoacyl synthase, C-terminal domain RA13_12435 PF00668 Condensation domain RA13_12435 PF00202 Aminotransferase class-III RA13_12435 PF00550 Phosphopantetheine attachment site RA13_12435 PF16197 Ketoacyl-synthetase C-terminal extension RA13_12435 PF00501 AMP-binding enzyme RA13_12435 PF13193 AMP-binding enzyme C-terminal domain RA13_12435 PF00109 Beta-ketoacyl synthase, N-terminal domain RA13_12445 PF00975 Thioesterase domain RA13_12445 PF00550 Phosphopantetheine attachment site RA13_12445 PF00668 Condensation domain RA13_12445 PF13193 AMP-binding enzyme C-terminal domain RA13_12445 PF00501 AMP-binding enzyme RA13_12450 PF02334 Replication terminator protein RA13_12455 PF14748 Pyrroline-5-carboxylate reductase dimerisation RA13_12455 PF03807 NADP oxidoreductase coenzyme F420-dependent RA13_12460 PF00696 Amino acid kinase family RA13_12460 PF01472 PUA domain RA13_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_12465 PF03466 LysR substrate binding domain RA13_12470 PF00310 Glutamine amidotransferases class-II RA13_12470 PF04898 Glutamate synthase central domain RA13_12470 PF01645 Conserved region in glutamate synthase RA13_12470 PF01493 GXGXG motif RA13_12480 PF00107 Zinc-binding dehydrogenase RA13_12480 PF08240 Alcohol dehydrogenase GroES-like domain RA13_12485 PF03466 LysR substrate binding domain RA13_12485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_12495 PF12728 Helix-turn-helix domain RA13_12500 PF00589 Phage integrase family RA13_12515 PF05105 Bacteriophage holin family RA13_12530 PF18801 response regulator aspartate phosphatase H, N terminal RA13_12530 PF13176 Tetratricopeptide repeat RA13_12545 PF16800 IseA DL-endopeptidase inhibitor RA13_12550 PF01263 Aldose 1-epimerase RA13_12555 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RA13_12560 PF00970 Oxidoreductase FAD-binding domain RA13_12560 PF00175 Oxidoreductase NAD-binding domain RA13_12560 PF00042 Globin RA13_12565 PF00501 AMP-binding enzyme RA13_12565 PF00550 Phosphopantetheine attachment site RA13_12565 PF00668 Condensation domain RA13_12565 PF13193 AMP-binding enzyme C-terminal domain RA13_12570 PF00668 Condensation domain RA13_12570 PF13193 AMP-binding enzyme C-terminal domain RA13_12570 PF00550 Phosphopantetheine attachment site RA13_12570 PF00501 AMP-binding enzyme RA13_12575 PF13193 AMP-binding enzyme C-terminal domain RA13_12575 PF00501 AMP-binding enzyme RA13_12575 PF00550 Phosphopantetheine attachment site RA13_12575 PF00668 Condensation domain RA13_12585 PF00668 Condensation domain RA13_12585 PF00550 Phosphopantetheine attachment site RA13_12585 PF00975 Thioesterase domain RA13_12585 PF13193 AMP-binding enzyme C-terminal domain RA13_12585 PF00501 AMP-binding enzyme RA13_12590 PF07098 Protein of unknown function (DUF1360) RA13_12595 PF02638 Glycosyl hydrolase-like 10 RA13_12600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA13_12600 PF02770 Acyl-CoA dehydrogenase, middle domain RA13_12600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA13_12605 PF13193 AMP-binding enzyme C-terminal domain RA13_12605 PF00501 AMP-binding enzyme RA13_12610 PF02785 Biotin carboxylase C-terminal domain RA13_12610 PF00289 Biotin carboxylase, N-terminal domain RA13_12610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA13_12615 PF00364 Biotin-requiring enzyme RA13_12625 PF01039 Carboxyl transferase domain RA13_12635 PF09335 SNARE associated Golgi protein RA13_12640 PF00483 Nucleotidyl transferase RA13_12645 PF04138 GtrA-like protein RA13_12665 PF01235 Sodium:alanine symporter family RA13_12675 PF03989 DNA gyrase C-terminal domain, beta-propeller RA13_12675 PF00521 DNA gyrase/topoisomerase IV, subunit A RA13_12680 PF00204 DNA gyrase B RA13_12680 PF00986 DNA gyrase B subunit, carboxyl terminus RA13_12680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_12680 PF01751 Toprim domain RA13_12685 PF13380 CoA binding domain RA13_12690 PF02660 Glycerol-3-phosphate acyltransferase RA13_12695 PF01521 Iron-sulphur cluster biosynthesis RA13_12705 PF03061 Thioesterase superfamily RA13_12715 PF08177 Small acid-soluble spore protein N family RA13_12720 PF13040 Fur-regulated basic protein B RA13_12725 PF00578 AhpC/TSA family RA13_12730 PF00330 Aconitase family (aconitate hydratase) RA13_12730 PF00694 Aconitase C-terminal domain RA13_12740 PF08179 Small acid-soluble spore protein P family RA13_12750 PF11084 Protein of unknown function (DUF2621) RA13_12755 PF07301 Protein of unknown function (DUF1453) RA13_12760 PF00072 Response regulator receiver domain RA13_12765 PF02683 Cytochrome C biogenesis protein transmembrane region RA13_12770 PF09388 Spo0E like sporulation regulatory protein RA13_12775 PF03672 Uncharacterised protein family (UPF0154) RA13_12780 PF10747 Sporulation inhibitor of replication protein SirA RA13_12785 PF00456 Transketolase, thiamine diphosphate binding domain RA13_12785 PF02780 Transketolase, C-terminal domain RA13_12785 PF02779 Transketolase, pyrimidine binding domain RA13_12790 PF05979 Bacterial protein of unknown function (DUF896) RA13_12795 PF00239 Resolvase, N terminal domain RA13_12800 PF01476 LysM domain RA13_12805 PF00717 Peptidase S24-like RA13_12805 PF01726 LexA DNA binding domain RA13_12815 PF07875 Coat F domain RA13_12820 PF10710 Protein of unknown function (DUF2512) RA13_12840 PF05908 Poly-gamma-glutamate hydrolase RA13_12845 PF14158 YndJ-like protein RA13_12850 PF13761 Domain of unknown function (DUF4166) RA13_12860 PF06912 Protein of unknown function (DUF1275) RA13_12900 PF04439 Streptomycin adenylyltransferase RA13_12905 PF14037 YoqO-like protein RA13_12915 PF00005 ABC transporter RA13_12930 PF18801 response regulator aspartate phosphatase H, N terminal RA13_12940 PF00753 Metallo-beta-lactamase superfamily RA13_12945 PF02586 SOS response associated peptidase (SRAP) RA13_12960 PF01575 MaoC like domain RA13_12965 PF13411 MerR HTH family regulatory protein RA13_12965 PF06445 GyrI-like small molecule binding domain RA13_12970 PF00583 Acetyltransferase (GNAT) family RA13_12995 PF01374 Glycosyl hydrolase family 46 RA13_13005 PF05995 Cysteine dioxygenase type I RA13_13095 PF13419 Haloacid dehalogenase-like hydrolase RA13_13105 PF07859 alpha/beta hydrolase fold RA13_13120 PF00085 Thioredoxin RA13_13125 PF03449 Transcription elongation factor, N-terminal RA13_13125 PF01272 Transcription elongation factor, GreA/GreB, C-term RA13_13145 PF02627 Carboxymuconolactone decarboxylase family RA13_13155 PF00085 Thioredoxin RA13_13165 PF00085 Thioredoxin RA13_13175 PF01597 Glycine cleavage H-protein RA13_13185 PF00440 Bacterial regulatory proteins, tetR family RA13_13185 PF16925 Tetracyclin repressor-like, C-terminal domain RA13_13190 PF00356 Bacterial regulatory proteins, lacI family RA13_13200 PF00528 Binding-protein-dependent transport system inner membrane component RA13_13215 PF00251 Glycosyl hydrolases family 32 N-terminal domain RA13_13215 PF08244 Glycosyl hydrolases family 32 C terminal RA13_13275 PF09346 SMI1 / KNR4 family (SUKH-1) RA13_13305 PF00722 Glycosyl hydrolases family 16 RA13_13315 PF08863 YolD-like protein RA13_13350 PF04740 LXG domain of WXG superfamily RA13_13350 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH RA13_13355 PF00005 ABC transporter RA13_13385 PF09346 SMI1 / KNR4 family (SUKH-1) RA13_13405 PF00583 Acetyltransferase (GNAT) family RA13_13425 PF01510 N-acetylmuramoyl-L-alanine amidase RA13_13425 PF01471 Putative peptidoglycan binding domain RA13_13450 PF00005 ABC transporter RA13_13485 PF03951 Glutamine synthetase, beta-Grasp domain RA13_13485 PF00120 Glutamine synthetase, catalytic domain RA13_13490 PF13411 MerR HTH family regulatory protein RA13_13495 PF06838 Methionine gamma-lyase RA13_13500 PF16360 GTP-binding GTPase Middle Region RA13_13500 PF13167 GTP-binding GTPase N-terminal RA13_13500 PF01926 50S ribosome-binding GTPase RA13_13540 PF00149 Calcineurin-like phosphoesterase RA13_13545 PF00269 Small, acid-soluble spore proteins, alpha/beta type RA13_13575 PF00303 Thymidylate synthase RA13_13610 PF00085 Thioredoxin RA13_13615 PF00268 Ribonucleotide reductase, small chain RA13_13630 PF13392 HNH endonuclease RA13_13635 PF14528 LAGLIDADG-like domain RA13_13635 PF02867 Ribonucleotide reductase, barrel domain RA13_13635 PF00317 Ribonucleotide reductase, all-alpha domain RA13_13635 PF08343 Ribonucleotide reductase N-terminal RA13_13640 PF07972 NrdI Flavodoxin like RA13_13745 PF02223 Thymidylate kinase RA13_13755 PF09629 YorP protein RA13_13765 PF06725 3D domain RA13_13770 PF02811 PHP domain RA13_13770 PF14579 Helix-hairpin-helix motif RA13_13770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RA13_13770 PF07733 Bacterial DNA polymerase III alpha NTPase domain RA13_13775 PF17768 RecJ OB domain RA13_13775 PF01368 DHH family RA13_13785 PF03796 DnaB-like helicase C terminal domain RA13_13810 PF09636 XkdW protein RA13_13825 PF13229 Right handed beta helix region RA13_13830 PF05908 Poly-gamma-glutamate hydrolase RA13_13865 PF01068 ATP dependent DNA ligase domain RA13_13885 PF14037 YoqO-like protein RA13_13950 PF09643 YopX protein RA13_13975 PF09467 Hypothetical protein Yopt RA13_13980 PF13443 Cro/C1-type HTH DNA-binding domain RA13_13990 PF14072 DNA-sulfur modification-associated RA13_14000 PF01381 Helix-turn-helix RA13_14060 PF17094 Uncharacterised protein family (UPF0715) RA13_14075 PF13443 Cro/C1-type HTH DNA-binding domain RA13_14140 PF16302 Domain of unknown function (DUF4944) RA13_14165 PF00216 Bacterial DNA-binding protein RA13_14170 PF09642 YonK protein RA13_14270 PF03009 Glycerophosphoryl diester phosphodiesterase family RA13_14315 PF10145 Phage-related minor tail protein RA13_14315 PF01551 Peptidase family M23 RA13_14315 PF01464 Transglycosylase SLT domain RA13_14320 PF05709 Phage tail protein RA13_14325 PF06605 Prophage endopeptidase tail RA13_14335 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain RA13_14335 PF12708 Pectate lyase superfamily protein RA13_14365 PF18801 response regulator aspartate phosphatase H, N terminal RA13_14375 PF11798 IMS family HHH motif RA13_14375 PF00817 impB/mucB/samB family RA13_14375 PF11799 impB/mucB/samB family C-terminal domain RA13_14380 PF08863 YolD-like protein RA13_14430 PF04740 LXG domain of WXG superfamily RA13_14430 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH RA13_14440 PF00565 Staphylococcal nuclease homologue RA13_14440 PF05901 Excalibur calcium-binding domain RA13_14460 PF00004 ATPase family associated with various cellular activities (AAA) RA13_14460 PF17866 AAA lid domain RA13_14465 PF01520 N-acetylmuramoyl-L-alanine amidase RA13_14465 PF05036 Sporulation related domain RA13_14475 PF00268 Ribonucleotide reductase, small chain RA13_14480 PF02867 Ribonucleotide reductase, barrel domain RA13_14480 PF08343 Ribonucleotide reductase N-terminal RA13_14480 PF00317 Ribonucleotide reductase, all-alpha domain RA13_14485 PF07972 NrdI Flavodoxin like RA13_14495 PF14157 YmzC-like protein RA13_14500 PF17209 Hfq protein RA13_14510 PF12788 YmaF family RA13_14525 PF00893 Small Multidrug Resistance protein RA13_14530 PF00893 Small Multidrug Resistance protein RA13_14535 PF02566 OsmC-like protein RA13_14540 PF05908 Poly-gamma-glutamate hydrolase RA13_14550 PF00082 Subtilase family RA13_14560 PF00067 Cytochrome P450 RA13_14570 PF08659 KR domain RA13_14570 PF02801 Beta-ketoacyl synthase, C-terminal domain RA13_14570 PF14765 Polyketide synthase dehydratase RA13_14570 PF00550 Phosphopantetheine attachment site RA13_14570 PF00109 Beta-ketoacyl synthase, N-terminal domain RA13_14570 PF16197 Ketoacyl-synthetase C-terminal extension RA13_14570 PF00668 Condensation domain RA13_14570 PF13193 AMP-binding enzyme C-terminal domain RA13_14570 PF00501 AMP-binding enzyme RA13_14575 PF08659 KR domain RA13_14575 PF08242 Methyltransferase domain RA13_14575 PF00550 Phosphopantetheine attachment site RA13_14575 PF02801 Beta-ketoacyl synthase, C-terminal domain RA13_14575 PF14765 Polyketide synthase dehydratase RA13_14575 PF00109 Beta-ketoacyl synthase, N-terminal domain RA13_14575 PF16197 Ketoacyl-synthetase C-terminal extension RA13_14590 PF00378 Enoyl-CoA hydratase/isomerase RA13_14595 PF00378 Enoyl-CoA hydratase/isomerase RA13_14600 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal RA13_14600 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal RA13_14610 PF00550 Phosphopantetheine attachment site RA13_14620 PF00698 Acyl transferase domain RA13_14625 PF00753 Metallo-beta-lactamase superfamily RA13_14630 PF13977 BetI-type transcriptional repressor, C-terminal RA13_14630 PF00440 Bacterial regulatory proteins, tetR family RA13_14645 PF08676 MutL C terminal dimerisation domain RA13_14645 PF01119 DNA mismatch repair protein, C-terminal domain RA13_14650 PF05190 MutS family domain IV RA13_14650 PF05192 MutS domain III RA13_14650 PF05188 MutS domain II RA13_14650 PF01624 MutS domain I RA13_14650 PF00488 MutS domain V RA13_14655 PF10628 Outer spore coat protein E (CotE) RA13_14660 PF06133 Control of competence regulator ComK, YlbF/YmcA RA13_14665 PF01938 TRAM domain RA13_14665 PF04055 Radical SAM superfamily RA13_14665 PF00919 Uncharacterized protein family UPF0004 RA13_14670 PF00302 Chloramphenicol acetyltransferase RA13_14675 PF00155 Aminotransferase class I and II RA13_14680 PF00107 Zinc-binding dehydrogenase RA13_14680 PF08240 Alcohol dehydrogenase GroES-like domain RA13_14685 PF04232 Stage V sporulation protein S (SpoVS) RA13_14690 PF13277 YmdB-like protein RA13_14695 PF12072 Domain of unknown function (DUF3552) RA13_14695 PF01966 HD domain RA13_14695 PF00013 KH domain RA13_14700 PF00144 Beta-lactamase RA13_14705 PF00154 recA bacterial DNA recombination protein RA13_14715 PF01066 CDP-alcohol phosphatidyltransferase RA13_14720 PF13464 Domain of unknown function (DUF4115) RA13_14725 PF11868 Protein of unknown function (DUF3388) RA13_14730 PF11588 Protein of unknown function (DUF3243) RA13_14740 PF05193 Peptidase M16 inactive domain RA13_14740 PF00675 Insulinase (Peptidase family M16) RA13_14745 PF05193 Peptidase M16 inactive domain RA13_14755 PF07690 Major Facilitator Superfamily RA13_14760 PF07702 UTRA domain RA13_14760 PF00392 Bacterial regulatory proteins, gntR family RA13_14765 PF17854 FtsK alpha domain RA13_14765 PF09397 Ftsk gamma domain RA13_14765 PF01580 FtsK/SpoIIIE family RA13_14770 PF14035 YlzJ-like protein RA13_14775 PF00574 Clp protease RA13_14780 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RA13_14780 PF00753 Metallo-beta-lactamase superfamily RA13_14780 PF17770 Ribonuclease J C-terminal domain RA13_14785 PF00701 Dihydrodipicolinate synthetase family RA13_14790 PF13840 ACT domain RA13_14790 PF00696 Amino acid kinase family RA13_14795 PF02774 Semialdehyde dehydrogenase, dimerisation domain RA13_14795 PF01118 Semialdehyde dehydrogenase, NAD binding domain RA13_14800 PF02441 Flavoprotein RA13_14805 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RA13_14805 PF16924 Dipicolinate synthase subunit A N-terminal domain RA13_14810 PF05239 PRC-barrel domain RA13_14815 PF05193 Peptidase M16 inactive domain RA13_14815 PF00675 Insulinase (Peptidase family M16) RA13_14820 PF01522 Polysaccharide deacetylase RA13_14825 PF03725 3' exoribonuclease family, domain 2 RA13_14825 PF01138 3' exoribonuclease family, domain 1 RA13_14825 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RA13_14825 PF00575 S1 RNA binding domain RA13_14825 PF00013 KH domain RA13_14830 PF00312 Ribosomal protein S15 RA13_14835 PF01687 Riboflavin kinase RA13_14835 PF06574 FAD synthetase RA13_14840 PF01509 TruB family pseudouridylate synthase (N terminal domain) RA13_14840 PF16198 tRNA pseudouridylate synthase B C-terminal domain RA13_14845 PF02033 Ribosome-binding factor A RA13_14850 PF04456 Protein of unknown function (DUF503) RA13_14855 PF00009 Elongation factor Tu GTP binding domain RA13_14855 PF11987 Translation-initiation factor 2 RA13_14855 PF04760 Translation initiation factor IF-2, N-terminal region RA13_14860 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RA13_14865 PF04296 Protein of unknown function (DUF448) RA13_14870 PF00575 S1 RNA binding domain RA13_14870 PF13184 NusA-like KH domain RA13_14870 PF08529 NusA N-terminal domain RA13_14875 PF02576 RimP N-terminal domain RA13_14875 PF17384 RimP C-terminal SH3 domain RA13_14920 PF01765 Ribosome recycling factor RA13_14925 PF00696 Amino acid kinase family RA13_14930 PF00889 Elongation factor TS RA13_14935 PF00318 Ribosomal protein S2 RA13_14945 PF04542 Sigma-70 region 2 RA13_14945 PF04539 Sigma-70 region 3 RA13_14945 PF04545 Sigma-70, region 4 RA13_14950 PF03975 CheD chemotactic sensory transduction RA13_14955 PF04509 CheC-like family RA13_14960 PF01584 CheW-like domain RA13_14965 PF07194 P2 response regulator binding domain RA13_14965 PF01627 Hpt domain RA13_14965 PF02895 Signal transducing histidine kinase, homodimeric domain RA13_14965 PF01584 CheW-like domain RA13_14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_14970 PF00072 Response regulator receiver domain RA13_14970 PF01339 CheB methylesterase RA13_14975 PF10609 NUBPL iron-transfer P-loop NTPase RA13_14980 PF00448 SRP54-type protein, GTPase domain RA13_14985 PF00771 FHIPEP family RA13_14990 PF01312 FlhB HrpN YscU SpaS Family RA13_14995 PF01311 Bacterial export proteins, family 1 RA13_15000 PF01313 Bacterial export proteins, family 3 RA13_15005 PF00813 FliP family RA13_15010 PF04347 Flagellar biosynthesis protein, FliO RA13_15015 PF00072 Response regulator receiver domain RA13_15020 PF04509 CheC-like family RA13_15020 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RA13_15025 PF02154 Flagellar motor switch protein FliM RA13_15025 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RA13_15030 PF03748 Flagellar basal body-associated protein FliL RA13_15035 PF06289 Flagellar and Swarming motility proteins RA13_15040 PF00460 Flagella basal body rod protein RA13_15040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA13_15045 PF03963 Flagellar hook capping protein - N-terminal region RA13_15050 PF02120 Flagellar hook-length control protein FliK RA13_15055 PF03448 MgtE intracellular N domain RA13_15060 PF02050 Flagellar FliJ protein RA13_15065 PF18269 T3SS EscN ATPase C-terminal domain RA13_15065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RA13_15065 PF02874 ATP synthase alpha/beta family, beta-barrel domain RA13_15070 PF02108 Flagellar assembly protein FliH RA13_15075 PF01706 FliG C-terminal domain RA13_15075 PF14841 FliG middle domain RA13_15075 PF14842 FliG N-terminal domain RA13_15080 PF08345 Flagellar M-ring protein C-terminal RA13_15080 PF01514 Secretory protein of YscJ/FliF family RA13_15085 PF02049 Flagellar hook-basal body complex protein FliE RA13_15090 PF00460 Flagella basal body rod protein RA13_15090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RA13_15095 PF00460 Flagella basal body rod protein RA13_15100 PF08222 CodY helix-turn-helix domain RA13_15100 PF06018 CodY GAF-like domain RA13_15105 PF10431 C-terminal, D2-small domain, of ClpB protein RA13_15105 PF07724 AAA domain (Cdc48 subfamily) RA13_15105 PF00004 ATPase family associated with various cellular activities (AAA) RA13_15110 PF00227 Proteasome subunit RA13_15115 PF00589 Phage integrase family RA13_15115 PF02899 Phage integrase, N-terminal SAM-like domain RA13_15120 PF01134 Glucose inhibited division protein A RA13_15125 PF01131 DNA topoisomerase RA13_15125 PF01751 Toprim domain RA13_15125 PF01396 Topoisomerase DNA binding C4 zinc finger RA13_15130 PF02481 DNA recombination-mediator protein A RA13_15135 PF00549 CoA-ligase RA13_15135 PF02629 CoA binding domain RA13_15140 PF08442 ATP-grasp domain RA13_15140 PF00549 CoA-ligase RA13_15145 PF01312 FlhB HrpN YscU SpaS Family RA13_15155 PF01351 Ribonuclease HII RA13_15160 PF01926 50S ribosome-binding GTPase RA13_15165 PF01245 Ribosomal protein L19 RA13_15170 PF01746 tRNA (Guanine-1)-methyltransferase RA13_15175 PF01782 RimM N-terminal domain RA13_15175 PF05239 PRC-barrel domain RA13_15180 PF11068 YlqD protein RA13_15190 PF00886 Ribosomal protein S16 RA13_15200 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RA13_15205 PF02881 SRP54-type protein, helical bundle domain RA13_15205 PF00448 SRP54-type protein, GTPase domain RA13_15210 PF06470 SMC proteins Flexible Hinge Domain RA13_15210 PF02463 RecF/RecN/SMC N terminal domain RA13_15215 PF00035 Double-stranded RNA binding motif RA13_15215 PF14622 Ribonuclease-III-like RA13_15220 PF00550 Phosphopantetheine attachment site RA13_15230 PF00698 Acyl transferase domain RA13_15235 PF02504 Fatty acid synthesis protein RA13_15240 PF03061 Thioesterase superfamily RA13_15245 PF17191 RecG wedge domain RA13_15245 PF00271 Helicase conserved C-terminal domain RA13_15245 PF00270 DEAD/DEAH box helicase RA13_15250 PF03313 Serine dehydratase alpha chain RA13_15255 PF03315 Serine dehydratase beta chain RA13_15255 PF01842 ACT domain RA13_15260 PF13684 Dihydroxyacetone kinase family RA13_15260 PF02734 DAK2 domain RA13_15265 PF03780 Asp23 family, cell envelope-related function RA13_15270 PF00830 Ribosomal L28 family RA13_15275 PF08183 Stage V sporulation protein family RA13_15280 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain RA13_15280 PF04263 Thiamin pyrophosphokinase, catalytic domain RA13_15285 PF00834 Ribulose-phosphate 3 epimerase family RA13_15290 PF03193 RsgA GTPase RA13_15290 PF16745 RsgA N-terminal domain RA13_15295 PF00069 Protein kinase domain RA13_15295 PF03793 PASTA domain RA13_15305 PF04055 Radical SAM superfamily RA13_15310 PF01029 NusB family RA13_15310 PF01189 16S rRNA methyltransferase RsmB/F RA13_15315 PF00551 Formyl transferase RA13_15315 PF02911 Formyl transferase, C-terminal domain RA13_15320 PF01327 Polypeptide deformylase RA13_15325 PF17764 3′ DNA-binding domain (3′BD) RA13_15325 PF18074 Primosomal protein N C-terminal domain RA13_15325 PF04851 Type III restriction enzyme, res subunit RA13_15325 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RA13_15325 PF00271 Helicase conserved C-terminal domain RA13_15330 PF02441 Flavoprotein RA13_15330 PF04127 DNA / pantothenate metabolism flavoprotein RA13_15335 PF01192 RNA polymerase Rpb6 RA13_15340 PF00625 Guanylate kinase RA13_15345 PF04025 Domain of unknown function (DUF370) RA13_15350 PF08340 Domain of unknown function (DUF1732) RA13_15350 PF03755 YicC-like family, N-terminal region RA13_15355 PF00689 Cation transporting ATPase, C-terminus RA13_15355 PF00690 Cation transporter/ATPase, N-terminus RA13_15375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RA13_15385 PF01747 ATP-sulfurylase RA13_15385 PF14306 PUA-like domain RA13_15390 PF01384 Phosphate transporter family RA13_15395 PF01507 Phosphoadenosine phosphosulfate reductase family RA13_15400 PF00156 Phosphoribosyl transferase domain RA13_15405 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RA13_15410 PF01180 Dihydroorotate dehydrogenase RA13_15415 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RA13_15415 PF00175 Oxidoreductase NAD-binding domain RA13_15420 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RA13_15420 PF02142 MGS-like domain RA13_15420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA13_15425 PF00117 Glutamine amidotransferase class-I RA13_15425 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RA13_15430 PF01979 Amidohydrolase family RA13_15435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RA13_15435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RA13_15440 PF00860 Permease family RA13_15445 PF00156 Phosphoribosyl transferase domain RA13_15450 PF00849 RNA pseudouridylate synthase RA13_15450 PF01479 S4 domain RA13_15460 PF01258 Prokaryotic dksA/traR C4-type zinc finger RA13_15465 PF08264 Anticodon-binding domain of tRNA RA13_15465 PF00133 tRNA synthetases class I (I, L, M and V) RA13_15475 PF05103 DivIVA protein RA13_15480 PF17774 Putative RNA-binding domain in YlmH RA13_15480 PF01479 S4 domain RA13_15485 PF02325 YGGT family RA13_15490 PF04472 Cell division protein SepF RA13_15495 PF01168 Alanine racemase, N-terminal domain RA13_15505 PF05239 PRC-barrel domain RA13_15510 PF01546 Peptidase family M20/M25/M40 RA13_15510 PF07687 Peptidase dimerisation domain RA13_15515 PF00005 ABC transporter RA13_15520 PF04539 Sigma-70 region 3 RA13_15520 PF04545 Sigma-70, region 4 RA13_15520 PF04542 Sigma-70 region 2 RA13_15525 PF04542 Sigma-70 region 2 RA13_15525 PF04545 Sigma-70, region 4 RA13_15530 PF03419 Sporulation factor SpoIIGA RA13_15535 PF05922 Peptidase inhibitor I9 RA13_15535 PF00082 Subtilase family RA13_15540 PF00091 Tubulin/FtsZ family, GTPase domain RA13_15540 PF12327 FtsZ family, C-terminal domain RA13_15550 PF06947 Protein of unknown function (DUF1290) RA13_15560 PF05949 Bacterial protein of unknown function (DUF881) RA13_15565 PF08478 POTRA domain, FtsQ-type RA13_15570 PF01565 FAD binding domain RA13_15570 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RA13_15575 PF04101 Glycosyltransferase family 28 C-terminal domain RA13_15575 PF03033 Glycosyltransferase family 28 N-terminal domain RA13_15580 PF01098 Cell cycle protein RA13_15585 PF08245 Mur ligase middle domain RA13_15585 PF02875 Mur ligase family, glutamate ligase domain RA13_15590 PF00953 Glycosyl transferase family 4 RA13_15590 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RA13_15595 PF01225 Mur ligase family, catalytic domain RA13_15595 PF02875 Mur ligase family, glutamate ligase domain RA13_15595 PF08245 Mur ligase middle domain RA13_15600 PF00905 Penicillin binding protein transpeptidase domain RA13_15600 PF03717 Penicillin-binding Protein dimerisation domain RA13_15600 PF03793 PASTA domain RA13_15615 PF01795 MraW methylase family RA13_15620 PF02381 MraZ protein, putative antitoxin-like RA13_15625 PF10079 Bacillithiol biosynthesis BshC RA13_15635 PF00583 Acetyltransferase (GNAT) family RA13_15645 PF01783 Ribosomal L32p protein family RA13_15650 PF02620 Large ribosomal RNA subunit accumulation protein YceD RA13_15660 PF05636 HIGH Nucleotidyl Transferase RA13_15665 PF13180 PDZ domain RA13_15665 PF05362 Lon protease (S16) C-terminal proteolytic domain RA13_15670 PF01734 Patatin-like phospholipase RA13_15675 PF07670 Nucleoside recognition RA13_15680 PF01467 Cytidylyltransferase-like RA13_15690 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) RA13_15695 PF06133 Control of competence regulator ComK, YlbF/YmcA RA13_15705 PF14003 YlbE-like protein RA13_15710 PF14071 Putative coat protein RA13_15715 PF14504 CAP-associated N-terminal RA13_15715 PF00188 Cysteine-rich secretory protein family RA13_15720 PF00571 CBS domain RA13_15725 PF08868 YugN-like family RA13_15730 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) RA13_15735 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RA13_15740 PF00510 Cytochrome c oxidase subunit III RA13_15745 PF00115 Cytochrome C and Quinol oxidase polypeptide I RA13_15750 PF00034 Cytochrome c RA13_15750 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RA13_15750 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RA13_15755 PF01040 UbiA prenyltransferase family RA13_15760 PF02628 Cytochrome oxidase assembly protein RA13_15765 PF02436 Conserved carboxylase domain RA13_15765 PF00682 HMGL-like RA13_15765 PF00289 Biotin carboxylase, N-terminal domain RA13_15765 PF02785 Biotin carboxylase C-terminal domain RA13_15765 PF00364 Biotin-requiring enzyme RA13_15765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA13_15770 PF01098 Cell cycle protein RA13_15775 PF07408 Protein of unknown function (DUF1507) RA13_15790 PF02562 PhoH-like protein RA13_15790 PF13638 PIN domain RA13_15795 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RA13_15800 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) RA13_15805 PF14036 YlaH-like protein RA13_15815 PF17259 Family of unknown function (DUF5325) RA13_15825 PF13490 Putative zinc-finger RA13_15830 PF03413 Peptidase propeptide and YPEB domain RA13_15830 PF07504 Fungalysin/Thermolysin Propeptide Motif RA13_15830 PF01447 Thermolysin metallopeptidase, catalytic domain RA13_15830 PF02868 Thermolysin metallopeptidase, alpha-helical domain RA13_15835 PF04072 Leucine carboxyl methyltransferase RA13_15840 PF00583 Acetyltransferase (GNAT) family RA13_15845 PF00459 Inositol monophosphatase family RA13_15855 PF06335 Protein of unknown function (DUF1054) RA13_15860 PF05256 Uncharacterised protein family (UPF0223) RA13_15865 PF01276 Orn/Lys/Arg decarboxylase, major domain RA13_15865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RA13_15870 PF13790 SR1 protein RA13_15885 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_15885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA13_15890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA13_15890 PF02817 e3 binding domain RA13_15890 PF00364 Biotin-requiring enzyme RA13_15895 PF02780 Transketolase, C-terminal domain RA13_15895 PF02779 Transketolase, pyrimidine binding domain RA13_15900 PF00676 Dehydrogenase E1 component RA13_15905 PF10368 Putative cell-wall binding lipoprotein RA13_15915 PF01327 Polypeptide deformylase RA13_15930 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RA13_15930 PF00753 Metallo-beta-lactamase superfamily RA13_15930 PF17770 Ribonuclease J C-terminal domain RA13_15935 PF13382 Adenine deaminase C-terminal domain RA13_15935 PF01979 Amidohydrolase family RA13_15940 PF02080 TrkA-C domain RA13_15940 PF02254 TrkA-N domain RA13_15945 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like RA13_15950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_15950 PF00512 His Kinase A (phospho-acceptor) domain RA13_15950 PF00989 PAS fold RA13_15955 PF18277 AbrB C-terminal domain RA13_15955 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RA13_15965 PF17447 Uncharacterized YkpC-like RA13_15970 PF02073 Thermophilic metalloprotease (M29) RA13_15975 PF02558 Ketopantoate reductase PanE/ApbA RA13_15975 PF08546 Ketopantoate reductase PanE/ApbA C terminal RA13_15980 PF12848 ABC transporter RA13_15980 PF00005 ABC transporter RA13_15990 PF10502 Signal peptidase, peptidase S26 RA13_15995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA13_15995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RA13_16000 PF00294 pfkB family carbohydrate kinase RA13_16005 PF00455 DeoR C terminal sensor domain RA13_16005 PF08220 DeoR-like helix-turn-helix domain RA13_16010 PF02687 FtsX-like permease family RA13_16010 PF12704 MacB-like periplasmic core domain RA13_16020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RA13_16025 PF04893 Yip1 domain RA13_16030 PF00005 ABC transporter RA13_16030 PF00664 ABC transporter transmembrane region RA13_16035 PF00664 ABC transporter transmembrane region RA13_16035 PF00005 ABC transporter RA13_16040 PF02597 ThiS family RA13_16045 PF02391 MoaE protein RA13_16050 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RA13_16055 PF03454 MoeA C-terminal region (domain IV) RA13_16055 PF00994 Probable molybdopterin binding domain RA13_16055 PF03453 MoeA N-terminal region (domain I and II) RA13_16060 PF00899 ThiF family RA13_16065 PF12804 MobA-like NTP transferase domain RA13_16080 PF00578 AhpC/TSA family RA13_16085 PF00578 AhpC/TSA family RA13_16085 PF10417 C-terminal domain of 1-Cys peroxiredoxin RA13_16090 PF00924 Mechanosensitive ion channel RA13_16095 PF03698 Uncharacterised protein family (UPF0180) RA13_16100 PF07687 Peptidase dimerisation domain RA13_16100 PF01546 Peptidase family M20/M25/M40 RA13_16105 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal RA13_16105 PF00132 Bacterial transferase hexapeptide (six repeats) RA13_16105 PF14602 Hexapeptide repeat of succinyl-transferase RA13_16110 PF00258 Flavodoxin RA13_16120 PF00258 Flavodoxin RA13_16125 PF03466 LysR substrate binding domain RA13_16125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_16135 PF14156 Antirepressor AbbA RA13_16140 PF04308 Ribonuclease H-like RA13_16145 PF08796 Protein of unknown function (DUF1797) RA13_16150 PF05067 Manganese containing catalase RA13_16155 PF10388 EAL-domain associated signalling protein domain RA13_16155 PF00563 EAL domain RA13_16165 PF10518 TAT (twin-arginine translocation) pathway signal sequence RA13_16165 PF00149 Calcineurin-like phosphoesterase RA13_16170 PF01476 LysM domain RA13_16170 PF03734 L,D-transpeptidase catalytic domain RA13_16175 PF07690 Major Facilitator Superfamily RA13_16180 PF14177 YkyB-like protein RA13_16185 PF01584 CheW-like domain RA13_16185 PF00072 Response regulator receiver domain RA13_16195 PF00155 Aminotransferase class I and II RA13_16200 PF00512 His Kinase A (phospho-acceptor) domain RA13_16200 PF08447 PAS fold RA13_16200 PF00989 PAS fold RA13_16200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_16205 PF03717 Penicillin-binding Protein dimerisation domain RA13_16205 PF00905 Penicillin binding protein transpeptidase domain RA13_16210 PF00188 Cysteine-rich secretory protein family RA13_16215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA13_16215 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA13_16220 PF02743 Cache domain RA13_16220 PF00672 HAMP domain RA13_16220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_16225 PF00583 Acetyltransferase (GNAT) family RA13_16235 PF11132 Transcriptional regulator protein (SplA) RA13_16240 PF00391 PEP-utilising enzyme, mobile domain RA13_16240 PF05524 PEP-utilising enzyme, N-terminal RA13_16240 PF02896 PEP-utilising enzyme, TIM barrel domain RA13_16245 PF00381 PTS HPr component phosphorylation site RA13_16250 PF00367 phosphotransferase system, EIIB RA13_16250 PF02378 Phosphotransferase system, EIIC RA13_16250 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RA13_16255 PF00874 PRD domain RA13_16255 PF03123 CAT RNA binding domain RA13_16260 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RA13_16260 PF00356 Bacterial regulatory proteins, lacI family RA13_16265 PF01321 Creatinase/Prolidase N-terminal domain RA13_16265 PF00557 Metallopeptidase family M24 RA13_16280 PF00578 AhpC/TSA family RA13_16285 PF01943 Polysaccharide biosynthesis protein RA13_16290 PF07486 Cell Wall Hydrolase RA13_16300 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) RA13_16310 PF11514 Protein of unknown function (DUF3219) RA13_16315 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain RA13_16315 PF01740 STAS domain RA13_16320 PF14489 QueF-like protein RA13_16325 PF04055 Radical SAM superfamily RA13_16330 PF01242 6-pyruvoyl tetrahydropterin synthase RA13_16335 PF06508 Queuosine biosynthesis protein QueC RA13_16350 PF00004 ATPase family associated with various cellular activities (AAA) RA13_16350 PF07724 AAA domain (Cdc48 subfamily) RA13_16350 PF17871 AAA lid domain RA13_16350 PF10431 C-terminal, D2-small domain, of ClpB protein RA13_16355 PF01618 MotA/TolQ/ExbB proton channel family RA13_16360 PF00691 OmpA family RA13_16360 PF13677 Membrane MotB of proton-channel complex MotA/MotB RA13_16365 PF01047 MarR family RA13_16370 PF02743 Cache domain RA13_16370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_16370 PF00512 His Kinase A (phospho-acceptor) domain RA13_16380 PF09388 Spo0E like sporulation regulatory protein RA13_16390 PF03079 ARD/ARD' family RA13_16395 PF00596 Class II Aldolase and Adducin N-terminal domain RA13_16405 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain RA13_16405 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain RA13_16410 PF00155 Aminotransferase class I and II RA13_16415 PF00795 Carbon-nitrogen hydrolase RA13_16420 PF01636 Phosphotransferase enzyme family RA13_16425 PF01008 Initiation factor 2 subunit family RA13_16430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RA13_16430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RA13_16435 PF13426 PAS domain RA13_16435 PF13188 PAS domain RA13_16435 PF00989 PAS fold RA13_16435 PF00512 His Kinase A (phospho-acceptor) domain RA13_16435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_16440 PF01757 Acyltransferase family RA13_16455 PF04239 Protein of unknown function (DUF421) RA13_16460 PF02386 Cation transport protein RA13_16465 PF01435 Peptidase family M48 RA13_16470 PF08876 Domain of unknown function (DUF1836) RA13_16475 PF00269 Small, acid-soluble spore proteins, alpha/beta type RA13_16480 PF12791 Anti-sigma factor N-terminus RA13_16485 PF04542 Sigma-70 region 2 RA13_16490 PF03741 Integral membrane protein TerC family RA13_16500 PF09335 SNARE associated Golgi protein RA13_16520 PF02735 Ku70/Ku80 beta-barrel domain RA13_16525 PF01068 ATP dependent DNA ligase domain RA13_16545 PF00149 Calcineurin-like phosphoesterase RA13_16555 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase RA13_16560 PF01047 MarR family RA13_16575 PF13411 MerR HTH family regulatory protein RA13_16580 PF00571 CBS domain RA13_16580 PF03448 MgtE intracellular N domain RA13_16580 PF01769 Divalent cation transporter RA13_16585 PF03413 Peptidase propeptide and YPEB domain RA13_16625 PF02361 Cobalt transport protein RA13_16630 PF01740 STAS domain RA13_16640 PF01717 Cobalamin-independent synthase, Catalytic domain RA13_16640 PF08267 Cobalamin-independent synthase, N-terminal domain RA13_16645 PF00300 Histidine phosphatase superfamily (branch 1) RA13_16650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RA13_16660 PF13181 Tetratricopeptide repeat RA13_16660 PF00535 Glycosyl transferase family 2 RA13_16680 PF02566 OsmC-like protein RA13_16685 PF01047 MarR family RA13_16690 PF02566 OsmC-like protein RA13_16695 PF00171 Aldehyde dehydrogenase family RA13_16700 PF01472 PUA domain RA13_16700 PF00696 Amino acid kinase family RA13_16705 PF01842 ACT domain RA13_16705 PF00551 Formyl transferase RA13_16710 PF00893 Small Multidrug Resistance protein RA13_16715 PF00893 Small Multidrug Resistance protein RA13_16720 PF13302 Acetyltransferase (GNAT) domain RA13_16725 PF12867 DinB superfamily RA13_16740 PF03551 Transcriptional regulator PadR-like family RA13_16745 PF04239 Protein of unknown function (DUF421) RA13_16750 PF03061 Thioesterase superfamily RA13_16760 PF10282 Lactonase, 7-bladed beta-propeller RA13_16765 PF00005 ABC transporter RA13_16765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA13_16770 PF00877 NlpC/P60 family RA13_16775 PF13378 Enolase C-terminal domain-like RA13_16775 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA13_16780 PF02016 LD-carboxypeptidase N-terminal domain RA13_16780 PF17676 LD-carboxypeptidase C-terminal domain RA13_16785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA13_16800 PF00528 Binding-protein-dependent transport system inner membrane component RA13_16805 PF04951 D-aminopeptidase RA13_16810 PF14748 Pyrroline-5-carboxylate reductase dimerisation RA13_16810 PF03807 NADP oxidoreductase coenzyme F420-dependent RA13_16815 PF13180 PDZ domain RA13_16825 PF00535 Glycosyl transferase family 2 RA13_16830 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RA13_16835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_16840 PF13520 Amino acid permease RA13_16845 PF01865 Protein of unknown function DUF47 RA13_16850 PF01384 Phosphate transporter family RA13_16855 PF14171 Toxin SpoIISA, type II toxin-antitoxin system RA13_16860 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system RA13_16865 PF01510 N-acetylmuramoyl-L-alanine amidase RA13_16865 PF01476 LysM domain RA13_16865 PF01471 Putative peptidoglycan binding domain RA13_16870 PF04688 SPP1 phage holin RA13_16875 PF10779 Haemolysin XhlA RA13_16885 PF09693 Phage uncharacterised protein (Phage_XkdX) RA13_16890 PF09636 XkdW protein RA13_16905 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) RA13_16910 PF04865 Baseplate J-like protein RA13_16915 PF10934 Protein of unknown function (DUF2634) RA13_16920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_16925 PF10844 Protein of unknown function (DUF2577) RA13_16935 PF01476 LysM domain RA13_16940 PF01464 Transglycosylase SLT domain RA13_16950 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC RA13_16955 PF09393 Phage tail tube protein RA13_16960 PF17482 Phage tail sheath C-terminal domain RA13_16960 PF17481 Phage tail sheath protein beta-sandwich domain RA13_16960 PF04984 Phage tail sheath protein subtilisin-like domain RA13_16975 PF04883 Bacteriophage HK97-gp10, putative tail-component RA13_16980 PF12206 Domain of unknown function (DUF3599) RA13_16985 PF11436 Protein of unknown function (DUF3199) RA13_16990 PF05065 Phage capsid family RA13_17000 PF04860 Phage portal protein RA13_17005 PF17288 Terminase RNAseH like domain RA13_17005 PF04466 Phage terminase large subunit RA13_17010 PF03592 Terminase small subunit RA13_17010 PF10668 Phage terminase small subunit RA13_17015 PF08281 Sigma-70, region 4 RA13_17020 PF17356 Phage-like element PBSX protein XtrA RA13_17035 PF01695 IstB-like ATP binding protein RA13_17050 PF01381 Helix-turn-helix RA13_17055 PF06114 IrrE N-terminal-like domain RA13_17060 PF05908 Poly-gamma-glutamate hydrolase RA13_17065 PF08000 Bacterial PH domain RA13_17070 PF01510 N-acetylmuramoyl-L-alanine amidase RA13_17070 PF01476 LysM domain RA13_17070 PF01471 Putative peptidoglycan binding domain RA13_17080 PF18801 response regulator aspartate phosphatase H, N terminal RA13_17085 PF05163 DinB family RA13_17090 PF01925 Sulfite exporter TauE/SafE RA13_17095 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RA13_17095 PF08666 SAF domain RA13_17100 PF01232 Mannitol dehydrogenase Rossmann domain RA13_17100 PF08125 Mannitol dehydrogenase C-terminal domain RA13_17115 PF02614 Glucuronate isomerase RA13_17125 PF05163 DinB family RA13_17130 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_17135 PF07849 Protein of unknown function (DUF1641) RA13_17145 PF13536 Putative multidrug resistance efflux transporter RA13_17150 PF00005 ABC transporter RA13_17155 PF03649 Uncharacterised protein family (UPF0014) RA13_17160 PF02602 Uroporphyrinogen-III synthase HemD RA13_17185 PF00067 Cytochrome P450 RA13_17195 PF00293 NUDIX domain RA13_17200 PF11611 Domain of unknown function (DUF4352) RA13_17205 PF07849 Protein of unknown function (DUF1641) RA13_17210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RA13_17210 PF01568 Molydopterin dinucleotide binding domain RA13_17210 PF00384 Molybdopterin oxidoreductase RA13_17210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA13_17210 PF12838 4Fe-4S dicluster domain RA13_17215 PF14172 Domain of unknown function (DUF4309) RA13_17220 PF10990 Protein of unknown function (DUF2809) RA13_17225 PF10901 Protein of unknown function (DUF2690) RA13_17230 PF01522 Polysaccharide deacetylase RA13_17230 PF13739 Deacetylase PdaC RA13_17230 PF11738 Protein of unknown function (DUF3298) RA13_17240 PF09388 Spo0E like sporulation regulatory protein RA13_17250 PF02308 MgtC family RA13_17255 PF14040 Deoxyribonuclease NucA/NucB RA13_17310 PF04740 LXG domain of WXG superfamily RA13_17310 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH RA13_17325 PF05684 Protein of unknown function (DUF819) RA13_17335 PF01053 Cys/Met metabolism PLP-dependent enzyme RA13_17340 PF01053 Cys/Met metabolism PLP-dependent enzyme RA13_17345 PF00756 Putative esterase RA13_17355 PF13673 Acetyltransferase (GNAT) domain RA13_17380 PF13361 UvrD-like helicase C-terminal domain RA13_17380 PF00580 UvrD/REP helicase N-terminal domain RA13_17385 PF14069 Stage VI sporulation protein F RA13_17400 PF07098 Protein of unknown function (DUF1360) RA13_17405 PF07552 Spore Coat Protein X and V domain RA13_17415 PF07552 Spore Coat Protein X and V domain RA13_17420 PF10612 Spore coat protein Z RA13_17425 PF10612 Spore coat protein Z RA13_17430 PF14153 Spore coat protein CotO RA13_17440 PF08543 Phosphomethylpyrimidine kinase RA13_17445 PF00899 ThiF family RA13_17450 PF05690 Thiazole biosynthesis protein ThiG RA13_17455 PF02597 ThiS family RA13_17460 PF01266 FAD dependent oxidoreductase RA13_17465 PF02581 Thiamine monophosphate synthase RA13_17470 PF03070 TENA/THI-4/PQQC family RA13_17475 PF00999 Sodium/hydrogen exchanger family RA13_17475 PF02254 TrkA-N domain RA13_17475 PF02080 TrkA-C domain RA13_17485 PF00149 Calcineurin-like phosphoesterase RA13_17490 PF00849 RNA pseudouridylate synthase RA13_17495 PF01513 ATP-NAD kinase RA13_17500 PF04607 Region found in RelA / SpoT proteins RA13_17510 PF01928 CYTH domain RA13_17515 PF01464 Transglycosylase SLT domain RA13_17520 PF01152 Bacterial-like globin RA13_17535 PF08439 Oligopeptidase F RA13_17535 PF01432 Peptidase family M3 RA13_17540 PF06054 Competence protein CoiA-like family RA13_17545 PF05389 Negative regulator of genetic competence (MecA) RA13_17550 PF03741 Integral membrane protein TerC family RA13_17555 PF03960 ArsC family RA13_17560 PF13508 Acetyltransferase (GNAT) domain RA13_17575 PF00005 ABC transporter RA13_17575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA13_17580 PF00005 ABC transporter RA13_17580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA13_17585 PF12911 N-terminal TM domain of oligopeptide transport permease C RA13_17585 PF00528 Binding-protein-dependent transport system inner membrane component RA13_17590 PF00528 Binding-protein-dependent transport system inner membrane component RA13_17595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA13_17605 PF00579 tRNA synthetases class I (W and Y) RA13_17610 PF12227 Protein of unknown function (DUF3603) RA13_17615 PF00528 Binding-protein-dependent transport system inner membrane component RA13_17615 PF12911 N-terminal TM domain of oligopeptide transport permease C RA13_17620 PF00528 Binding-protein-dependent transport system inner membrane component RA13_17625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA13_17630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA13_17630 PF00005 ABC transporter RA13_17635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RA13_17635 PF00005 ABC transporter RA13_17640 PF10026 Predicted Zn-dependent protease (DUF2268) RA13_17645 PF02801 Beta-ketoacyl synthase, C-terminal domain RA13_17645 PF00109 Beta-ketoacyl synthase, N-terminal domain RA13_17650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RA13_17650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RA13_17660 PF10815 ComZ RA13_17665 PF02608 ABC transporter substrate-binding protein PnrA-like RA13_17680 PF11151 Protein of unknown function (DUF2929) RA13_17685 PF14168 YjzC-like protein RA13_17690 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RA13_17690 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RA13_17695 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RA13_17695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RA13_17700 PF00117 Glutamine amidotransferase class-I RA13_17700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RA13_17705 PF00202 Aminotransferase class-III RA13_17710 PF00696 Amino acid kinase family RA13_17720 PF01118 Semialdehyde dehydrogenase, NAD binding domain RA13_17720 PF02774 Semialdehyde dehydrogenase, dimerisation domain RA13_17725 PF07690 Major Facilitator Superfamily RA13_17730 PF01565 FAD binding domain RA13_17740 PF01883 Iron-sulfur cluster assembly protein RA13_17755 PF12758 Protein of unknown function (DUF3813) RA13_17760 PF12690 Intracellular proteinase inhibitor RA13_17765 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RA13_17765 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RA13_17770 PF02645 Uncharacterised protein, DegV family COG1307 RA13_17775 PF12650 Domain of unknown function (DUF3784) RA13_17785 PF13509 S1 domain RA13_17785 PF17783 CvfB-like winged helix domain RA13_17790 PF04461 Protein of unknown function (DUF520) RA13_17795 PF02574 Homocysteine S-methyltransferase RA13_17795 PF02219 Methylenetetrahydrofolate reductase RA13_17800 PF13673 Acetyltransferase (GNAT) domain RA13_17805 PF18014 Acetyltransferase (GNAT) domain RA13_17805 PF13673 Acetyltransferase (GNAT) domain RA13_17810 PF07690 Major Facilitator Superfamily RA13_17815 PF13378 Enolase C-terminal domain-like RA13_17815 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RA13_17820 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RA13_17825 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) RA13_17835 PF01507 Phosphoadenosine phosphosulfate reductase family RA13_17840 PF01747 ATP-sulfurylase RA13_17840 PF14306 PUA-like domain RA13_17860 PF13599 Pentapeptide repeats (9 copies) RA13_17875 PF05163 DinB family RA13_17880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RA13_17880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RA13_17885 PF00356 Bacterial regulatory proteins, lacI family RA13_17890 PF01040 UbiA prenyltransferase family RA13_17895 PF02311 AraC-like ligand binding domain RA13_17895 PF12833 Helix-turn-helix domain RA13_17900 PF01554 MatE RA13_17910 PF00733 Asparagine synthase RA13_17910 PF13537 Glutamine amidotransferase domain RA13_17915 PF10949 Protein of unknown function (DUF2777) RA13_17925 PF07457 Protein of unknown function (DUF1516) RA13_17930 PF01557 Fumarylacetoacetate (FAA) hydrolase family RA13_17935 PF08757 CotH kinase protein RA13_17940 PF09388 Spo0E like sporulation regulatory protein RA13_17945 PF04235 Protein of unknown function (DUF418) RA13_17955 PF10803 Spore germination GerPB RA13_17960 PF10737 Spore germination protein GerPC RA13_17970 PF10970 Spore germination protein GerPE RA13_17975 PF10676 Spore germination protein gerPA/gerPF RA13_17985 PF13476 AAA domain RA13_17990 PF00149 Calcineurin-like phosphoesterase RA13_17990 PF12320 Type 5 capsule protein repressor C-terminal domain RA13_17995 PF12705 PD-(D/E)XK nuclease superfamily RA13_17995 PF13361 UvrD-like helicase C-terminal domain RA13_17995 PF00580 UvrD/REP helicase N-terminal domain RA13_18000 PF13361 UvrD-like helicase C-terminal domain RA13_18000 PF12705 PD-(D/E)XK nuclease superfamily RA13_18005 PF02915 Rubrerythrin RA13_18010 PF03860 Domain of Unknown Function (DUF326) RA13_18015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RA13_18015 PF12793 Sugar transport-related sRNA regulator N-term RA13_18020 PF07690 Major Facilitator Superfamily RA13_18025 PF05145 Transition state regulatory protein AbrB RA13_18030 PF01047 MarR family RA13_18035 PF01494 FAD binding domain RA13_18040 PF10502 Signal peptidase, peptidase S26 RA13_18045 PF09335 SNARE associated Golgi protein RA13_18055 PF11755 Protein of unknown function (DUF3311) RA13_18060 PF00474 Sodium:solute symporter family RA13_18065 PF05901 Excalibur calcium-binding domain RA13_18070 PF06338 ComK protein RA13_18075 PF08858 IDEAL domain RA13_18085 PF00355 Rieske [2Fe-2S] domain RA13_18085 PF01266 FAD dependent oxidoreductase RA13_18090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_18100 PF00378 Enoyl-CoA hydratase/isomerase RA13_18105 PF00171 Aldehyde dehydrogenase family RA13_18110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA13_18110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA13_18115 PF02770 Acyl-CoA dehydrogenase, middle domain RA13_18115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RA13_18115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA13_18125 PF02803 Thiolase, C-terminal domain RA13_18125 PF00108 Thiolase, N-terminal domain RA13_18130 PF00300 Histidine phosphatase superfamily (branch 1) RA13_18135 PF01032 FecCD transport family RA13_18140 PF01032 FecCD transport family RA13_18145 PF01497 Periplasmic binding protein RA13_18150 PF08240 Alcohol dehydrogenase GroES-like domain RA13_18150 PF00107 Zinc-binding dehydrogenase RA13_18155 PF00583 Acetyltransferase (GNAT) family RA13_18160 PF00082 Subtilase family RA13_18160 PF05922 Peptidase inhibitor I9 RA13_18165 PF16491 CAAX prenyl protease N-terminal, five membrane helices RA13_18165 PF01435 Peptidase family M48 RA13_18180 PF13460 NAD(P)H-binding RA13_18185 PF03099 Biotin/lipoate A/B protein ligase family RA13_18185 PF10437 Bacterial lipoate protein ligase C-terminus RA13_18190 PF12706 Beta-lactamase superfamily domain RA13_18195 PF14149 YhfH-like protein RA13_18200 PF00375 Sodium:dicarboxylate symporter family RA13_18205 PF05343 M42 glutamyl aminopeptidase RA13_18215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RA13_18215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RA13_18225 PF00440 Bacterial regulatory proteins, tetR family RA13_18225 PF17932 Tetracyclin repressor-like, C-terminal domain RA13_18240 PF01208 Uroporphyrinogen decarboxylase (URO-D) RA13_18245 PF00905 Penicillin binding protein transpeptidase domain RA13_18245 PF00912 Transglycosylase RA13_18250 PF03992 Antibiotic biosynthesis monooxygenase RA13_18260 PF01546 Peptidase family M20/M25/M40 RA13_18260 PF07687 Peptidase dimerisation domain RA13_18265 PF12787 EcsC protein family RA13_18270 PF05975 Bacterial ABC transporter protein EcsB RA13_18275 PF00005 ABC transporter RA13_18280 PF01230 HIT domain RA13_18285 PF00266 Aminotransferase class-V RA13_18290 PF17099 Tryptophan transporter TrpP RA13_18300 PF12732 YtxH-like protein RA13_18305 PF01047 MarR family RA13_18310 PF08963 Protein of unknown function (DUF1878) RA13_18320 PF11667 Putative zincin peptidase RA13_18330 PF09680 Family of unknown function RA13_18335 PF09680 Family of unknown function RA13_18345 PF14147 Sporulation protein YhaL RA13_18350 PF01966 HD domain RA13_18355 PF13514 AAA domain RA13_18360 PF00149 Calcineurin-like phosphoesterase RA13_18370 PF13732 Domain of unknown function (DUF4162) RA13_18370 PF00005 ABC transporter RA13_18375 PF14120 YhzD-like protein RA13_18380 PF00378 Enoyl-CoA hydratase/isomerase RA13_18390 PF02080 TrkA-C domain RA13_18395 PF00999 Sodium/hydrogen exchanger family RA13_18400 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RA13_18405 PF04055 Radical SAM superfamily RA13_18420 PF06133 Control of competence regulator ComK, YlbF/YmcA RA13_18425 PF04286 Protein of unknown function (DUF445) RA13_18435 PF14398 YheC/D like ATP-grasp RA13_18440 PF14398 YheC/D like ATP-grasp RA13_18445 PF17277 Family of unknown function (DUF5342) RA13_18450 PF00269 Small, acid-soluble spore proteins, alpha/beta type RA13_18460 PF13460 NAD(P)H-binding RA13_18465 PF00664 ABC transporter transmembrane region RA13_18465 PF00005 ABC transporter RA13_18470 PF00664 ABC transporter transmembrane region RA13_18470 PF00005 ABC transporter RA13_18475 PF00582 Universal stress protein family RA13_18480 PF03553 Na+/H+ antiporter family RA13_18485 PF01063 Amino-transferase class IV RA13_18490 PF01522 Polysaccharide deacetylase RA13_18495 PF02146 Sir2 family RA13_18500 PF00924 Mechanosensitive ion channel RA13_18505 PF17444 Uncharacterized YhdX-like RA13_18510 PF03009 Glycerophosphoryl diester phosphodiesterase family RA13_18515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RA13_18520 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RA13_18525 PF01595 Cyclin M transmembrane N-terminal domain RA13_18525 PF00571 CBS domain RA13_18525 PF03471 Transporter associated domain RA13_18535 PF13411 MerR HTH family regulatory protein RA13_18540 PF03471 Transporter associated domain RA13_18540 PF01595 Cyclin M transmembrane N-terminal domain RA13_18540 PF00571 CBS domain RA13_18545 PF01370 NAD dependent epimerase/dehydratase family RA13_18550 PF01266 FAD dependent oxidoreductase RA13_18555 PF01553 Acyltransferase RA13_18560 PF00248 Aldo/keto reductase family RA13_18565 PF08281 Sigma-70, region 4 RA13_18565 PF04542 Sigma-70 region 2 RA13_18570 PF13791 Sigma factor regulator C-terminal RA13_18570 PF13800 Sigma factor regulator N-terminal RA13_18575 PF17453 Sigma-M inhibitor RA13_18580 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RA13_18580 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RA13_18585 PF00171 Aldehyde dehydrogenase family RA13_18590 PF01546 Peptidase family M20/M25/M40 RA13_18595 PF00324 Amino acid permease RA13_18600 PF00583 Acetyltransferase (GNAT) family RA13_18620 PF13520 Amino acid permease RA13_18630 PF00285 Citrate synthase, C-terminal domain RA13_18635 PF03466 LysR substrate binding domain RA13_18635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_18640 PF00877 NlpC/P60 family RA13_18640 PF01476 LysM domain RA13_18645 PF00245 Alkaline phosphatase RA13_18650 PF04293 SpoVR like protein RA13_18655 PF05552 Conserved TM helix RA13_18660 PF02082 Transcriptional regulator RA13_18665 PF01476 LysM domain RA13_18665 PF00877 NlpC/P60 family RA13_18670 PF13028 Protein of unknown function (DUF3889) RA13_18675 PF14148 YhdB-like protein RA13_18680 PF03358 NADPH-dependent FMN reductase RA13_18685 PF00196 Bacterial regulatory proteins, luxR family RA13_18685 PF00072 Response regulator receiver domain RA13_18690 PF13185 GAF domain RA13_18690 PF07730 Histidine kinase RA13_18695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RA13_18695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RA13_18695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RA13_18695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RA13_18700 PF01266 FAD dependent oxidoreductase RA13_18700 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RA13_18705 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RA13_18705 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RA13_18710 PF00230 Major intrinsic protein RA13_18715 PF04309 Glycerol-3-phosphate responsive antiterminator RA13_18720 PF00202 Aminotransferase class-III RA13_18730 PF00795 Carbon-nitrogen hydrolase RA13_18730 PF00583 Acetyltransferase (GNAT) family RA13_18735 PF13419 Haloacid dehalogenase-like hydrolase RA13_18740 PF00571 CBS domain RA13_18745 PF17326 Family of unknown function (DUF5365) RA13_18750 PF00849 RNA pseudouridylate synthase RA13_18750 PF01479 S4 domain RA13_18755 PF04203 Sortase domain RA13_18765 PF03705 CheR methyltransferase, all-alpha domain RA13_18765 PF08448 PAS fold RA13_18765 PF01339 CheB methylesterase RA13_18765 PF01739 CheR methyltransferase, SAM binding domain RA13_18770 PF07875 Coat F domain RA13_18780 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) RA13_18790 PF00375 Sodium:dicarboxylate symporter family RA13_18795 PF07694 5TMR of 5TMR-LYT RA13_18795 PF00990 Diguanylate cyclase, GGDEF domain RA13_18800 PF03180 NLPA lipoprotein RA13_18810 PF00313 'Cold-shock' DNA-binding domain RA13_18815 PF12679 ABC-2 family transporter protein RA13_18820 PF00005 ABC transporter RA13_18825 PF00005 ABC transporter RA13_18830 PF00392 Bacterial regulatory proteins, gntR family RA13_18845 PF03358 NADPH-dependent FMN reductase RA13_18850 PF07690 Major Facilitator Superfamily RA13_18860 PF01047 MarR family RA13_18865 PF04285 Protein of unknown function (DUF444) RA13_18870 PF08298 PrkA AAA domain RA13_18870 PF06798 PrkA serine protein kinase C-terminal domain RA13_18880 PF04519 Polymer-forming cytoskeletal RA13_18885 PF13171 Protein of unknown function (DUF4004) RA13_18890 PF00588 SpoU rRNA Methylase family RA13_18895 PF12671 Putative amidase domain RA13_18900 PF08331 Domain of unknown function (DUF1730) RA13_18915 PF01381 Helix-turn-helix RA13_18925 PF00253 Ribosomal protein S14p/S29e RA13_18930 PF00296 Luciferase-like monooxygenase RA13_18935 PF00528 Binding-protein-dependent transport system inner membrane component RA13_18940 PF09084 NMT1/THI5 like RA13_18950 PF00199 Catalase RA13_18950 PF06628 Catalase-related immune-responsive RA13_18955 PF13040 Fur-regulated basic protein B RA13_18960 PF01964 Radical SAM ThiC family RA13_18960 PF13667 ThiC-associated domain RA13_18970 PF07070 SpoOM protein RA13_19085 PF14540 Nucleotidyltransferase-like RA13_19085 PF18576 Helix-turn-helix domain RA13_19090 PF11023 Zinc-ribbon containing domain RA13_19095 PF01475 Ferric uptake regulator family RA13_19100 PF00578 AhpC/TSA family RA13_19105 PF00202 Aminotransferase class-III RA13_19110 PF06081 Aromatic acid exporter family member 1 RA13_19115 PF00005 ABC transporter RA13_19115 PF00664 ABC transporter transmembrane region RA13_19120 PF04167 Protein of unknown function (DUF402) RA13_19125 PF14182 YgaB-like protein RA13_19130 PF04259 Small, acid-soluble spore protein, gamma-type RA13_19145 PF00730 HhH-GPD superfamily base excision DNA repair protein RA13_19145 PF14815 NUDIX domain RA13_19150 PF04307 LexA-binding, inner membrane-associated putative hydrolase RA13_19155 PF09586 Bacterial membrane protein YfhO RA13_19160 PF00535 Glycosyl transferase family 2 RA13_19165 PF00561 alpha/beta hydrolase fold RA13_19170 PF13630 SdpI/YhfL protein family RA13_19175 PF08239 Bacterial SH3 domain RA13_19180 PF14043 WVELL protein RA13_19185 PF08176 Small acid-soluble spore protein K family RA13_19190 PF07690 Major Facilitator Superfamily RA13_19195 PF08838 Protein of unknown function (DUF1811) RA13_19200 PF02631 RecX family RA13_19205 PF08338 Domain of unknown function (DUF1731) RA13_19205 PF01370 NAD dependent epimerase/dehydratase family RA13_19210 PF14152 YfhE-like protein RA13_19215 PF14151 YfhD-like protein RA13_19220 PF00881 Nitroreductase family RA13_19225 PF02567 Phenazine biosynthesis-like protein RA13_19230 PF01032 FecCD transport family RA13_19235 PF01032 FecCD transport family RA13_19240 PF01497 Periplasmic binding protein RA13_19250 PF01047 MarR family RA13_19255 PF07690 Major Facilitator Superfamily RA13_19260 PF12867 DinB superfamily RA13_19265 PF08240 Alcohol dehydrogenase GroES-like domain RA13_19265 PF00107 Zinc-binding dehydrogenase RA13_19270 PF01337 Barstar (barnase inhibitor) RA13_19275 PF01757 Acyltransferase family RA13_19280 PF03551 Transcriptional regulator PadR-like family RA13_19280 PF10400 Virulence activator alpha C-term RA13_19295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_19300 PF07681 DoxX RA13_19305 PF00005 ABC transporter RA13_19305 PF00664 ABC transporter transmembrane region RA13_19310 PF00664 ABC transporter transmembrane region RA13_19310 PF00005 ABC transporter RA13_19315 PF12708 Pectate lyase superfamily protein RA13_19315 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain RA13_19320 PF02378 Phosphotransferase system, EIIC RA13_19320 PF00367 phosphotransferase system, EIIB RA13_19325 PF01380 SIS domain RA13_19325 PF01418 Helix-turn-helix domain, rpiR family RA13_19330 PF11975 Family 4 glycosyl hydrolase C-terminal domain RA13_19330 PF02056 Family 4 glycosyl hydrolase RA13_19335 PF06013 Proteins of 100 residues with WXG RA13_19350 PF17353 Family of unknown function (DUF5381) RA13_19355 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RA13_19360 PF08141 Small acid-soluble spore protein H family RA13_19365 PF00158 Sigma-54 interaction domain RA13_19365 PF01590 GAF domain RA13_19365 PF02954 Bacterial regulatory protein, Fis family RA13_19370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RA13_19370 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_19375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RA13_19375 PF00364 Biotin-requiring enzyme RA13_19375 PF02817 e3 binding domain RA13_19385 PF00676 Dehydrogenase E1 component RA13_19395 PF01207 Dihydrouridine synthase (Dus) RA13_19400 PF05958 tRNA (Uracil-5-)-methyltransferase RA13_19400 PF01938 TRAM domain RA13_19410 PF00730 HhH-GPD superfamily base excision DNA repair protein RA13_19415 PF01544 CorA-like Mg2+ transporter protein RA13_19425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RA13_19425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RA13_19430 PF01522 Polysaccharide deacetylase RA13_19440 PF08756 YfkB-like domain RA13_19440 PF04055 Radical SAM superfamily RA13_19445 PF00924 Mechanosensitive ion channel RA13_19450 PF14167 YfkD-like protein RA13_19455 PF01699 Sodium/calcium exchanger protein RA13_19460 PF07690 Major Facilitator Superfamily RA13_19465 PF03631 Virulence factor BrkB RA13_19475 PF01451 Low molecular weight phosphotyrosine protein phosphatase RA13_19480 PF06569 Protein of unknown function (DUF1128) RA13_19485 PF07690 Major Facilitator Superfamily RA13_19490 PF01487 Type I 3-dehydroquinase RA13_19495 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RA13_19495 PF08501 Shikimate dehydrogenase substrate binding domain RA13_19500 PF07690 Major Facilitator Superfamily RA13_19505 PF00356 Bacterial regulatory proteins, lacI family RA13_19510 PF01965 DJ-1/PfpI family RA13_19515 PF02872 5'-nucleotidase, C-terminal domain RA13_19515 PF00149 Calcineurin-like phosphoesterase RA13_19520 PF00881 Nitroreductase family RA13_19525 PF00392 Bacterial regulatory proteins, gntR family RA13_19525 PF07702 UTRA domain RA13_19530 PF16657 Maltogenic Amylase, C-terminal domain RA13_19530 PF00128 Alpha amylase, catalytic domain RA13_19535 PF00367 phosphotransferase system, EIIB RA13_19535 PF02378 Phosphotransferase system, EIIC RA13_19545 PF09350 Domain of unknown function (DUF1992) RA13_19550 PF00884 Sulfatase RA13_19555 PF00367 phosphotransferase system, EIIB RA13_19555 PF02378 Phosphotransferase system, EIIC RA13_19565 PF11588 Protein of unknown function (DUF3243) RA13_19575 PF11121 Protein of unknown function (DUF2639) RA13_19580 PF03475 3-alpha domain RA13_19580 PF03473 MOSC domain RA13_19585 PF00708 Acylphosphatase RA13_19590 PF02898 Nitric oxide synthase, oxygenase domain RA13_19595 PF00753 Metallo-beta-lactamase superfamily RA13_19600 PF03600 Citrate transporter RA13_19605 PF03401 Tripartite tricarboxylate transporter family receptor RA13_19610 PF00072 Response regulator receiver domain RA13_19610 PF12431 Transcriptional regulator RA13_19610 PF08279 HTH domain RA13_19620 PF00939 Sodium:sulfate symporter transmembrane region RA13_19630 PF00544 Pectate lyase RA13_19635 PF11181 Heat induced stress protein YflT RA13_19640 PF11486 Protein of unknown function (DUF3212) RA13_19645 PF01497 Periplasmic binding protein RA13_19650 PF01032 FecCD transport family RA13_19655 PF01032 FecCD transport family RA13_19660 PF00005 ABC transporter RA13_19665 PF00107 Zinc-binding dehydrogenase RA13_19665 PF16884 N-terminal domain of oxidoreductase RA13_19670 PF00270 DEAD/DEAH box helicase RA13_19670 PF00271 Helicase conserved C-terminal domain RA13_19675 PF12848 ABC transporter RA13_19675 PF00005 ABC transporter RA13_19680 PF13302 Acetyltransferase (GNAT) domain RA13_19685 PF07690 Major Facilitator Superfamily RA13_19690 PF13411 MerR HTH family regulatory protein RA13_19695 PF16326 ABC transporter C-terminal domain RA13_19695 PF00005 ABC transporter RA13_19695 PF12848 ABC transporter RA13_19700 PF00535 Glycosyl transferase family 2 RA13_19705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_19710 PF00171 Aldehyde dehydrogenase family RA13_19715 PF13520 Amino acid permease RA13_19720 PF07690 Major Facilitator Superfamily RA13_19725 PF03407 Nucleotide-diphospho-sugar transferase RA13_19730 PF00535 Glycosyl transferase family 2 RA13_19735 PF03407 Nucleotide-diphospho-sugar transferase RA13_19740 PF16363 GDP-mannose 4,6 dehydratase RA13_19745 PF00483 Nucleotidyl transferase RA13_19750 PF00884 Sulfatase RA13_19760 PF00005 ABC transporter RA13_19775 PF00258 Flavodoxin RA13_19775 PF00067 Cytochrome P450 RA13_19775 PF00667 FAD binding domain RA13_19775 PF00175 Oxidoreductase NAD-binding domain RA13_19780 PF13039 Protein of unknown function (DUF3900) RA13_19780 PF13037 Domain of unknown function (DUF3898) RA13_19785 PF01027 Inhibitor of apoptosis-promoting Bax1 RA13_19790 PF01687 Riboflavin kinase RA13_19795 PF10055 Uncharacterized small protein (DUF2292) RA13_19800 PF01740 STAS domain RA13_19800 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain RA13_19805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RA13_19810 PF03992 Antibiotic biosynthesis monooxygenase RA13_19815 PF04239 Protein of unknown function (DUF421) RA13_19820 PF11975 Family 4 glycosyl hydrolase C-terminal domain RA13_19820 PF02056 Family 4 glycosyl hydrolase RA13_19825 PF00528 Binding-protein-dependent transport system inner membrane component RA13_19830 PF00528 Binding-protein-dependent transport system inner membrane component RA13_19835 PF01547 Bacterial extracellular solute-binding protein RA13_19845 PF08533 Beta-galactosidase C-terminal domain RA13_19845 PF08532 Beta-galactosidase trimerisation domain RA13_19845 PF02449 Beta-galactosidase RA13_19850 PF00657 GDSL-like Lipase/Acylhydrolase RA13_19855 PF00248 Aldo/keto reductase family RA13_19860 PF18370 Rhamnogalacturonan I lyases beta-sheet domain RA13_19860 PF01839 FG-GAP repeat RA13_19865 PF18370 Rhamnogalacturonan I lyases beta-sheet domain RA13_19870 PF04854 Protein of unknown function, DUF624 RA13_19875 PF09224 Domain of unknown function (DUF1961) RA13_19880 PF13472 GDSL-like Lipase/Acylhydrolase family RA13_19885 PF12833 Helix-turn-helix domain RA13_19890 PF07470 Glycosyl Hydrolase Family 88 RA13_19900 PF00528 Binding-protein-dependent transport system inner membrane component RA13_19905 PF13416 Bacterial extracellular solute-binding protein RA13_19910 PF00072 Response regulator receiver domain RA13_19910 PF12833 Helix-turn-helix domain RA13_19920 PF04854 Protein of unknown function, DUF624 RA13_19930 PF00583 Acetyltransferase (GNAT) family RA13_19935 PF05067 Manganese containing catalase RA13_19940 PF12652 CotJB protein RA13_19945 PF11007 Spore coat associated protein JA (CotJA) RA13_19955 PF01709 Transcriptional regulator RA13_19960 PF18801 response regulator aspartate phosphatase H, N terminal RA13_19960 PF13176 Tetratricopeptide repeat RA13_19970 PF04740 LXG domain of WXG superfamily RA13_19970 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH RA13_19985 PF18801 response regulator aspartate phosphatase H, N terminal RA13_19985 PF13181 Tetratricopeptide repeat RA13_20020 PF01938 TRAM domain RA13_20020 PF05958 tRNA (Uracil-5-)-methyltransferase RA13_20025 PF00781 Diacylglycerol kinase catalytic domain RA13_20030 PF00873 AcrB/AcrD/AcrF family RA13_20035 PF00440 Bacterial regulatory proteins, tetR family RA13_20040 PF02934 GatB/GatE catalytic domain RA13_20040 PF02637 GatB domain RA13_20045 PF01425 Amidase RA13_20050 PF02686 Glu-tRNAGln amidotransferase C subunit RA13_20055 PF00474 Sodium:solute symporter family RA13_20060 PF02308 MgtC family RA13_20065 PF01636 Phosphotransferase enzyme family RA13_20075 PF12826 Helix-hairpin-helix motif RA13_20075 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RA13_20075 PF03120 NAD-dependent DNA ligase OB-fold domain RA13_20075 PF01653 NAD-dependent DNA ligase adenylation domain RA13_20075 PF00533 BRCA1 C Terminus (BRCT) domain RA13_20080 PF00580 UvrD/REP helicase N-terminal domain RA13_20080 PF13361 UvrD-like helicase C-terminal domain RA13_20085 PF01884 PcrB family RA13_20090 PF01645 Conserved region in glutamate synthase RA13_20095 PF01371 Trp repressor protein RA13_20100 PF11258 Protein of unknown function (DUF3048) N-terminal domain RA13_20100 PF17479 Protein of unknown function (DUF3048) C-terminal domain RA13_20105 PF13382 Adenine deaminase C-terminal domain RA13_20105 PF01979 Amidohydrolase family RA13_20110 PF11127 Protein of unknown function (DUF2892) RA13_20115 PF13520 Amino acid permease RA13_20120 PF01037 Lrp/AsnC ligand binding domain RA13_20125 PF02843 Phosphoribosylglycinamide synthetase, C domain RA13_20125 PF02844 Phosphoribosylglycinamide synthetase, N domain RA13_20125 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RA13_20130 PF01808 AICARFT/IMPCHase bienzyme RA13_20130 PF02142 MGS-like domain RA13_20135 PF00551 Formyl transferase RA13_20140 PF02769 AIR synthase related protein, C-terminal domain RA13_20140 PF00586 AIR synthase related protein, N-terminal domain RA13_20145 PF00156 Phosphoribosyl transferase domain RA13_20150 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RA13_20150 PF00586 AIR synthase related protein, N-terminal domain RA13_20150 PF02769 AIR synthase related protein, C-terminal domain RA13_20160 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RA13_20165 PF01259 SAICAR synthetase RA13_20170 PF00206 Lyase RA13_20170 PF10397 Adenylosuccinate lyase C-terminus RA13_20175 PF02222 ATP-grasp domain RA13_20175 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RA13_20180 PF00731 AIR carboxylase RA13_20185 PF14044 NETI protein RA13_20190 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RA13_20205 PF00860 Permease family RA13_20220 PF02540 NAD synthase RA13_20220 PF00958 GMP synthase C terminal domain RA13_20220 PF00117 Glutamine amidotransferase class-I RA13_20225 PF11992 Domain of unknown function (DUF3488) RA13_20225 PF01841 Transglutaminase-like superfamily RA13_20225 PF13559 Domain of unknown function (DUF4129) RA13_20230 PF01882 Protein of unknown function DUF58 RA13_20235 PF17863 AAA lid domain RA13_20235 PF07726 ATPase family associated with various cellular activities (AAA) RA13_20240 PF01545 Cation efflux family RA13_20240 PF16916 Dimerisation domain of Zinc Transporter RA13_20250 PF00324 Amino acid permease RA13_20255 PF00394 Multicopper oxidase RA13_20255 PF07732 Multicopper oxidase RA13_20255 PF07731 Multicopper oxidase RA13_20260 PF13170 Protein of unknown function (DUF4003) RA13_20265 PF12697 Alpha/beta hydrolase family RA13_20270 PF14169 Cold-inducible protein YdjO RA13_20280 PF03330 Lytic transglycolase RA13_20285 PF08240 Alcohol dehydrogenase GroES-like domain RA13_20285 PF00107 Zinc-binding dehydrogenase RA13_20290 PF00083 Sugar (and other) transporter RA13_20295 PF01047 MarR family RA13_20300 PF00881 Nitroreductase family RA13_20310 PF08281 Sigma-70, region 4 RA13_20310 PF04542 Sigma-70 region 2 RA13_20315 PF11738 Protein of unknown function (DUF3298) RA13_20315 PF13739 Deacetylase PdaC RA13_20320 PF13421 SPFH domain-Band 7 family RA13_20325 PF04536 TPM domain RA13_20330 PF08271 TFIIB zinc-binding RA13_20335 PF04012 PspA/IM30 family RA13_20340 PF00294 pfkB family carbohydrate kinase RA13_20350 PF08240 Alcohol dehydrogenase GroES-like domain RA13_20350 PF00107 Zinc-binding dehydrogenase RA13_20355 PF00931 NB-ARC domain RA13_20355 PF13176 Tetratricopeptide repeat RA13_20370 PF00144 Beta-lactamase RA13_20380 PF00072 Response regulator receiver domain RA13_20380 PF00196 Bacterial regulatory proteins, luxR family RA13_20390 PF00118 TCP-1/cpn60 chaperonin family RA13_20395 PF00166 Chaperonin 10 Kd subunit RA13_20400 PF02517 CPBP intramembrane metalloprotease RA13_20405 PF14146 Domain of unknown function (DUF4305) RA13_20410 PF00902 Sec-independent protein translocase protein (TatC) RA13_20415 PF02416 mttA/Hcf106 family RA13_20420 PF06971 Putative DNA-binding protein N-terminus RA13_20420 PF02629 CoA binding domain RA13_20425 PF01967 MoaC family RA13_20430 PF16326 ABC transporter C-terminal domain RA13_20430 PF12848 ABC transporter RA13_20430 PF00005 ABC transporter RA13_20435 PF00814 Glycoprotease family RA13_20440 PF00583 Acetyltransferase (GNAT) family RA13_20445 PF00814 Glycoprotease family RA13_20450 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RA13_20455 PF00586 AIR synthase related protein, N-terminal domain RA13_20455 PF02769 AIR synthase related protein, C-terminal domain RA13_20500 PF01978 Sugar-specific transcriptional regulator TrmB RA13_20500 PF11495 Archaeal transcriptional regulator TrmB RA13_20515 PF07690 Major Facilitator Superfamily RA13_20520 PF07729 FCD domain RA13_20520 PF00392 Bacterial regulatory proteins, gntR family RA13_20525 PF07690 Major Facilitator Superfamily RA13_20540 PF13302 Acetyltransferase (GNAT) domain RA13_20545 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain RA13_20545 PF12708 Pectate lyase superfamily protein RA13_20550 PF00528 Binding-protein-dependent transport system inner membrane component RA13_20555 PF00571 CBS domain RA13_20555 PF00005 ABC transporter RA13_20565 PF11553 Protein of unknown function (DUF3231) RA13_20570 PF00245 Alkaline phosphatase RA13_20575 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RA13_20575 PF11611 Domain of unknown function (DUF4352) RA13_20585 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RA13_20590 PF00704 Glycosyl hydrolases family 18 RA13_20590 PF01476 LysM domain RA13_20595 PF00465 Iron-containing alcohol dehydrogenase RA13_20600 PF07690 Major Facilitator Superfamily RA13_20610 PF00905 Penicillin binding protein transpeptidase domain RA13_20625 PF00561 alpha/beta hydrolase fold RA13_20635 PF01037 Lrp/AsnC ligand binding domain RA13_20640 PF12706 Beta-lactamase superfamily domain RA13_20660 PF01238 Phosphomannose isomerase type I RA13_20665 PF02378 Phosphotransferase system, EIIC RA13_20665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA13_20665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RA13_20670 PF08279 HTH domain RA13_20670 PF05043 Mga helix-turn-helix domain RA13_20670 PF00874 PRD domain RA13_20670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA13_20675 PF03176 MMPL family RA13_20680 PF01047 MarR family RA13_20690 PF00474 Sodium:solute symporter family RA13_20700 PF01451 Low molecular weight phosphotyrosine protein phosphatase RA13_20705 PF02040 Arsenical pump membrane protein RA13_20710 PF01022 Bacterial regulatory protein, arsR family RA13_20715 PF01022 Bacterial regulatory protein, arsR family RA13_20720 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RA13_20720 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RA13_20725 PF00155 Aminotransferase class I and II RA13_20725 PF00392 Bacterial regulatory proteins, gntR family RA13_20730 PF00892 EamA-like transporter family RA13_20745 PF07690 Major Facilitator Superfamily RA13_20750 PF02567 Phenazine biosynthesis-like protein RA13_20765 PF00892 EamA-like transporter family RA13_20770 PF00583 Acetyltransferase (GNAT) family RA13_20775 PF01047 MarR family RA13_20785 PF04237 YjbR RA13_20790 PF02559 CarD-like/TRCF domain RA13_20795 PF00313 'Cold-shock' DNA-binding domain RA13_20805 PF00487 Fatty acid desaturase RA13_20810 PF07690 Major Facilitator Superfamily RA13_20810 PF00083 Sugar (and other) transporter RA13_20815 PF12706 Beta-lactamase superfamily domain RA13_20830 PF01037 Lrp/AsnC ligand binding domain RA13_20845 PF00486 Transcriptional regulatory protein, C terminal RA13_20845 PF00072 Response regulator receiver domain RA13_20850 PF00512 His Kinase A (phospho-acceptor) domain RA13_20850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_20860 PF01522 Polysaccharide deacetylase RA13_20860 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain RA13_20890 PF00710 Asparaginase, N-terminal RA13_20890 PF17763 Glutaminase/Asparaginase C-terminal domain RA13_20895 PF00291 Pyridoxal-phosphate dependent enzyme RA13_20900 PF01042 Endoribonuclease L-PSP RA13_20970 PF10263 SprT-like family RA13_20970 PF17283 SprT-like zinc ribbon domain RA13_20980 PF09371 Tex-like protein N-terminal domain RA13_20980 PF16921 Tex protein YqgF-like domain RA13_20980 PF00575 S1 RNA binding domain RA13_20980 PF17674 HHH domain RA13_20985 PF07228 Stage II sporulation protein E (SpoIIE) RA13_20990 PF04539 Sigma-70 region 3 RA13_20990 PF04545 Sigma-70, region 4 RA13_20990 PF04542 Sigma-70 region 2 RA13_20995 PF13581 Histidine kinase-like ATPase domain RA13_21000 PF01740 STAS domain RA13_21005 PF07228 Stage II sporulation protein E (SpoIIE) RA13_21005 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain RA13_21010 PF13581 Histidine kinase-like ATPase domain RA13_21015 PF01740 STAS domain RA13_21020 PF08678 Rsbr N terminal RA13_21020 PF01740 STAS domain RA13_21025 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RA13_21030 PF01402 Ribbon-helix-helix protein, copG family RA13_21035 PF01168 Alanine racemase, N-terminal domain RA13_21035 PF00842 Alanine racemase, C-terminal domain RA13_21045 PF01648 4'-phosphopantetheinyl transferase superfamily RA13_21050 PF01694 Rhomboid family RA13_21055 PF03703 Bacterial PH domain RA13_21060 PF03703 Bacterial PH domain RA13_21065 PF00270 DEAD/DEAH box helicase RA13_21065 PF00271 Helicase conserved C-terminal domain RA13_21075 PF01225 Mur ligase family, catalytic domain RA13_21075 PF02875 Mur ligase family, glutamate ligase domain RA13_21075 PF08245 Mur ligase middle domain RA13_21080 PF07478 D-ala D-ala ligase C-terminus RA13_21080 PF01820 D-ala D-ala ligase N-terminus RA13_21085 PF00085 Thioredoxin RA13_21090 PF01545 Cation efflux family RA13_21090 PF16916 Dimerisation domain of Zinc Transporter RA13_21100 PF13040 Fur-regulated basic protein B RA13_21105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RA13_21105 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RA13_21105 PF02770 Acyl-CoA dehydrogenase, middle domain RA13_21120 PF00005 ABC transporter RA13_21125 PF01594 AI-2E family transporter RA13_21130 PF00375 Sodium:dicarboxylate symporter family RA13_21135 PF00072 Response regulator receiver domain RA13_21135 PF08279 HTH domain RA13_21140 PF17203 Single cache domain 3 RA13_21140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_21140 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RA13_21145 PF03480 Bacterial extracellular solute-binding protein, family 7 RA13_21150 PF05067 Manganese containing catalase RA13_21160 PF07883 Cupin domain RA13_21165 PF10685 Stress-induced bacterial acidophilic repeat motif RA13_21165 PF00477 Small hydrophilic plant seed protein RA13_21170 PF12787 EcsC protein family RA13_21175 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) RA13_21180 PF04226 Transglycosylase associated protein RA13_21185 PF01566 Natural resistance-associated macrophage protein RA13_21215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RA13_21215 PF00205 Thiamine pyrophosphate enzyme, central domain RA13_21215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RA13_21225 PF13520 Amino acid permease RA13_21230 PF03170 Bacterial cellulose synthase subunit RA13_21240 PF00990 Diguanylate cyclase, GGDEF domain RA13_21255 PF01037 Lrp/AsnC ligand binding domain RA13_21270 PF12823 Domain of unknown function (DUF3817) RA13_21275 PF10997 Alternate to MurJ RA13_21285 PF16242 Pyridoxamine 5'-phosphate oxidase like RA13_21305 PF13193 AMP-binding enzyme C-terminal domain RA13_21305 PF00501 AMP-binding enzyme RA13_21310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RA13_21310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA13_21310 PF00874 PRD domain RA13_21310 PF08279 HTH domain RA13_21310 PF05043 Mga helix-turn-helix domain RA13_21315 PF00248 Aldo/keto reductase family RA13_21320 PF05223 NTF2-like N-terminal transpeptidase domain RA13_21320 PF03717 Penicillin-binding Protein dimerisation domain RA13_21320 PF00905 Penicillin binding protein transpeptidase domain RA13_21325 PF03992 Antibiotic biosynthesis monooxygenase RA13_21330 PF13129 Protein of unknown function (DUF3953) RA13_21340 PF01614 Bacterial transcriptional regulator RA13_21340 PF09339 IclR helix-turn-helix domain RA13_21345 PF02626 Carboxyltransferase domain, subdomain A and B RA13_21350 PF02682 Carboxyltransferase domain, subdomain C and D RA13_21355 PF07286 Protein of unknown function (DUF1445) RA13_21360 PF01566 Natural resistance-associated macrophage protein RA13_21365 PF03746 LamB/YcsF family RA13_21385 PF07977 FabA-like domain RA13_21390 PF01738 Dienelactone hydrolase family RA13_21395 PF08125 Mannitol dehydrogenase C-terminal domain RA13_21395 PF01232 Mannitol dehydrogenase Rossmann domain RA13_21400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RA13_21405 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RA13_21405 PF02378 Phosphotransferase system, EIIC RA13_21415 PF08220 DeoR-like helix-turn-helix domain RA13_21415 PF05573 NosL RA13_21420 PF13115 YtkA-like RA13_21420 PF05425 Copper resistance protein D RA13_21420 PF04234 CopC domain RA13_21425 PF07987 Domain of unkown function (DUF1775) RA13_21435 PF06800 Sugar transport protein RA13_21440 PF00171 Aldehyde dehydrogenase family RA13_21445 PF00202 Aminotransferase class-III RA13_21455 PF01022 Bacterial regulatory protein, arsR family RA13_21460 PF03992 Antibiotic biosynthesis monooxygenase RA13_21465 PF00881 Nitroreductase family RA13_21470 PF18801 response regulator aspartate phosphatase H, N terminal RA13_21475 PF00440 Bacterial regulatory proteins, tetR family RA13_21480 PF07690 Major Facilitator Superfamily RA13_21485 PF01497 Periplasmic binding protein RA13_21490 PF00005 ABC transporter RA13_21495 PF01032 FecCD transport family RA13_21500 PF01032 FecCD transport family RA13_21505 PF00696 Amino acid kinase family RA13_21505 PF13840 ACT domain RA13_21510 PF09680 Family of unknown function RA13_21515 PF09680 Family of unknown function RA13_21520 PF11131 Rap-phr extracellular signalling RA13_21525 PF18801 response regulator aspartate phosphatase H, N terminal RA13_21530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RA13_21530 PF00672 HAMP domain RA13_21530 PF00512 His Kinase A (phospho-acceptor) domain RA13_21540 PF12704 MacB-like periplasmic core domain RA13_21540 PF02687 FtsX-like permease family RA13_21545 PF00005 ABC transporter RA13_21550 PF03972 MmgE/PrpD family RA13_21560 PF00005 ABC transporter RA13_21565 PF00528 Binding-protein-dependent transport system inner membrane component RA13_21570 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA13_21585 PF03845 Spore germination protein RA13_21590 PF05504 Spore germination B3/ GerAC like, C-terminal RA13_21605 PF12708 Pectate lyase superfamily protein RA13_21605 PF13229 Right handed beta helix region RA13_21610 PF00854 POT family RA13_21615 PF00561 alpha/beta hydrolase fold RA13_21630 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RA13_21635 PF02441 Flavoprotein RA13_21640 PF03466 LysR substrate binding domain RA13_21640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RA13_21645 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA13_21655 PF00005 ABC transporter RA13_21665 PF01648 4'-phosphopantetheinyl transferase superfamily RA13_21670 PF00155 Aminotransferase class I and II RA13_21670 PF00392 Bacterial regulatory proteins, gntR family RA13_21675 PF00892 EamA-like transporter family RA13_21685 PF00975 Thioesterase domain RA13_21690 PF00550 Phosphopantetheine attachment site RA13_21690 PF00668 Condensation domain RA13_21690 PF13193 AMP-binding enzyme C-terminal domain RA13_21690 PF00501 AMP-binding enzyme RA13_21690 PF00975 Thioesterase domain RA13_21695 PF00550 Phosphopantetheine attachment site RA13_21695 PF00668 Condensation domain RA13_21695 PF13193 AMP-binding enzyme C-terminal domain RA13_21695 PF00501 AMP-binding enzyme RA13_21700 PF13193 AMP-binding enzyme C-terminal domain RA13_21700 PF00550 Phosphopantetheine attachment site RA13_21700 PF00668 Condensation domain RA13_21700 PF00501 AMP-binding enzyme RA13_21705 PF01638 HxlR-like helix-turn-helix RA13_21710 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RA13_21715 PF01380 SIS domain RA13_21720 PF00672 HAMP domain RA13_21720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RA13_21720 PF17202 Single cache domain 3 RA13_21725 PF14040 Deoxyribonuclease NucA/NucB RA13_21735 PF00232 Glycosyl hydrolase family 1 RA13_21750 PF10925 Protein of unknown function (DUF2680) RA13_21755 PF06271 RDD family RA13_21765 PF00497 Bacterial extracellular solute-binding proteins, family 3 RA13_21770 PF00528 Binding-protein-dependent transport system inner membrane component RA13_21775 PF07683 Cobalamin synthesis protein cobW C-terminal domain RA13_21775 PF02492 CobW/HypB/UreG, nucleotide-binding domain RA13_21780 PF03734 L,D-transpeptidase catalytic domain RA13_21785 PF02649 Type I GTP cyclohydrolase folE2 RA13_21790 PF07690 Major Facilitator Superfamily RA13_21795 PF18267 Rubredoxin NAD+ reductase C-terminal domain RA13_21795 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_21795 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RA13_21795 PF04324 BFD-like [2Fe-2S] binding domain RA13_21800 PF01568 Molydopterin dinucleotide binding domain RA13_21800 PF00384 Molybdopterin oxidoreductase RA13_21800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RA13_21805 PF04324 BFD-like [2Fe-2S] binding domain RA13_21805 PF07992 Pyridine nucleotide-disulphide oxidoreductase RA13_21805 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RA13_21805 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RA13_21805 PF18267 Rubredoxin NAD+ reductase C-terminal domain RA13_21810 PF00355 Rieske [2Fe-2S] domain RA13_21815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RA13_21830 PF03773 Predicted permease RA13_21835 PF09323 Domain of unknown function (DUF1980) RA13_21840 PF13556 PucR C-terminal helix-turn-helix domain RA13_21840 PF17853 GGDEF-like domain RA13_21845 PF00474 Sodium:solute symporter family RA13_21850 PF00171 Aldehyde dehydrogenase family RA13_21860 PF10127 RNA repair pathway DNA polymerase beta family RA13_21865 PF05448 Acetyl xylan esterase (AXE1) RA13_21875 PF01202 Shikimate kinase RA13_21880 PF01261 Xylose isomerase-like TIM barrel RA13_21890 PF02540 NAD synthase RA13_21895 PF09347 Domain of unknown function (DUF1989) RA13_21900 PF00324 Amino acid permease RA13_21905 PF08892 YqcI/YcgG family RA13_21910 PF01810 LysE type translocator RA13_21915 PF01047 MarR family RA13_21920 PF07690 Major Facilitator Superfamily RA13_21925 PF02652 L-lactate permease RA13_21930 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RA13_21930 PF00056 lactate/malate dehydrogenase, NAD binding domain