RA13_00095 SM00382 ATPases associated with a variety of cellular activities RA13_00105 SM00642 Alpha-amylase domain RA13_00115 SM00028 Tetratricopeptide repeats RA13_00225 SM00382 ATPases associated with a variety of cellular activities RA13_00230 SM00387 Histidine kinase-like ATPases RA13_00230 SM00388 His Kinase A (phosphoacceptor) domain RA13_00235 SM00448 cheY-homologous receiver domain RA13_00235 SM00862 Transcriptional regulatory protein, C terminal RA13_00255 SM00858 RA13_00255 RA13_00260 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_00260 SM00895 RA13_00260 RA13_00265 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RA13_00280 SM01130 RA13_00280 RA13_00285 SM00448 cheY-homologous receiver domain RA13_00290 SM00387 Histidine kinase-like ATPases RA13_00325 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_00325 SM00866 RA13_00325 RA13_00345 SM00450 Rhodanese Homology Domain RA13_00350 SM00342 helix_turn_helix, arabinose operon control protein RA13_00510 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_00530 SM00387 Histidine kinase-like ATPases RA13_00530 SM00388 His Kinase A (phosphoacceptor) domain RA13_00535 SM00448 cheY-homologous receiver domain RA13_00535 SM00862 Transcriptional regulatory protein, C terminal RA13_00545 SM01130 RA13_00545 RA13_00555 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_00580 SM00422 helix_turn_helix, mercury resistance RA13_00580 SM00871 Bacterial transcription activator, effector binding domain RA13_00605 SM00382 ATPases associated with a variety of cellular activities RA13_00620 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RA13_00745 SM00342 helix_turn_helix, arabinose operon control protein RA13_00830 SM01251 RA13_00830 RA13_00845 SM00646 RA13_00845 RA13_00895 SM00382 ATPases associated with a variety of cellular activities RA13_00900 SM00382 ATPases associated with a variety of cellular activities RA13_00910 SM00662 RNA polymerases D RA13_00930 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_00995 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RA13_01000 SM01374 RA13_01000 RA13_01020 SM00322 K homology RNA-binding domain RA13_01035 SM01382 RA13_01035 RA13_01035 SM01383 RA13_01035 RA13_01055 SM01403 RA13_01055 RA13_01070 SM00838 Elongation factor G C-terminus RA13_01070 SM00889 Elongation factor G, domain IV RA13_01090 SM00663 RNA polymerase I subunit A N-terminus RA13_01120 SM00649 Ribosomal protein L11/L12 RA13_01125 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RA13_01125 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RA13_01150 SM00967 RNA 2'-O ribose methyltransferase substrate binding RA13_01155 SM00535 Ribonuclease III family RA13_01160 SM00840 RA13_01160 RA13_01185 SM00670 Large family of predicted nucleotide-binding domains RA13_01195 SM00382 ATPases associated with a variety of cellular activities RA13_01200 SM00382 ATPases associated with a variety of cellular activities RA13_01200 SM01086 C-terminal, D2-small domain, of ClpB protein RA13_01305 SM00530 Helix-turn-helix XRE-family like proteins RA13_01315 SM00905 Dihydroneopterin aldolase RA13_01360 SM00382 ATPases associated with a variety of cellular activities RA13_01370 SM00977 TilS substrate C-terminal domain RA13_01375 SM00220 Serine/Threonine protein kinases, catalytic domain RA13_01385 SM00331 Sigma factor PP2C-like phosphatases RA13_01385 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RA13_01400 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_01420 SM00363 S4 RNA-binding domain RA13_01435 SM00966 SpoVT / AbrB like domain RA13_01440 SM00487 DEAD-like helicases superfamily RA13_01440 SM00490 helicase superfamily c-terminal domain RA13_01440 SM00982 RA13_01440 RA13_01440 SM01058 CarD-like/TRCF domain RA13_01460 SM01400 RA13_01460 RA13_01505 SM00650 Ribosomal RNA adenine dimethylases RA13_01510 SM00493 RA13_01510 RA13_01515 SM01208 RA13_01515 RA13_01530 SM00966 SpoVT / AbrB like domain RA13_01540 SM00465 GIY-YIG type nucleases (URI domain) RA13_01635 SM00493 RA13_01635 RA13_01645 SM00382 ATPases associated with a variety of cellular activities RA13_01665 SM00257 Lysin motif RA13_01665 SM00636 RA13_01665 RA13_01700 SM00936 Penicillin-binding protein 5, C-terminal domain RA13_01705 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_01705 SM01240 RA13_01705 RA13_01775 SM00434 DNA Topoisomerase IV RA13_01780 SM00387 Histidine kinase-like ATPases RA13_01780 SM00433 TopoisomeraseII RA13_01800 SM00480 DNA polymerase III beta subunit RA13_01805 SM00382 ATPases associated with a variety of cellular activities RA13_01805 SM00760 Bacterial dnaA protein helix-turn-helix domain RA13_01825 SM00393 Putative single-stranded nucleic acids-binding domain RA13_01825 SM01245 RA13_01825 RA13_01835 SM01228 RA13_01835 RA13_01845 SM00470 ParB-like nuclease domain RA13_01860 SM00470 ParB-like nuclease domain RA13_01880 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RA13_01905 SM00849 Metallo-beta-lactamase superfamily RA13_01910 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_01910 SM00895 RA13_01910 RA13_01925 SM00342 helix_turn_helix, arabinose operon control protein RA13_01935 SM00354 helix_turn _helix lactose operon repressor RA13_01975 SM00387 Histidine kinase-like ATPases RA13_01975 SM00388 His Kinase A (phosphoacceptor) domain RA13_01980 SM00448 cheY-homologous receiver domain RA13_01980 SM00862 Transcriptional regulatory protein, C terminal RA13_02000 SM00387 Histidine kinase-like ATPases RA13_02005 SM00421 helix_turn_helix, Lux Regulon RA13_02005 SM00448 cheY-homologous receiver domain RA13_02020 SM00422 helix_turn_helix, mercury resistance RA13_02025 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_02025 SM00895 RA13_02025 RA13_02030 SM01329 RA13_02030 RA13_02055 SM01131 RA13_02055 RA13_02080 SM00267 diguanylate cyclase RA13_02115 SM00382 ATPases associated with a variety of cellular activities RA13_02150 SM00448 cheY-homologous receiver domain RA13_02150 SM00862 Transcriptional regulatory protein, C terminal RA13_02155 SM00091 PAS domain RA13_02155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_02155 SM00387 Histidine kinase-like ATPases RA13_02155 SM00388 His Kinase A (phosphoacceptor) domain RA13_02170 SM00849 Metallo-beta-lactamase superfamily RA13_02175 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_02195 SM00382 ATPases associated with a variety of cellular activities RA13_02200 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. RA13_02205 SM00382 ATPases associated with a variety of cellular activities RA13_02210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RA13_02335 SM00857 Resolvase, N terminal domain RA13_02340 SM00857 Resolvase, N terminal domain RA13_02375 SM00382 ATPases associated with a variety of cellular activities RA13_02435 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_02435 SM00895 RA13_02435 RA13_02530 SM00387 Histidine kinase-like ATPases RA13_02560 SM00420 helix_turn_helix, Deoxyribose operon repressor RA13_02560 SM01134 RA13_02560 RA13_02625 SM00448 cheY-homologous receiver domain RA13_02625 SM00862 Transcriptional regulatory protein, C terminal RA13_02630 SM00387 Histidine kinase-like ATPases RA13_02635 SM00382 ATPases associated with a variety of cellular activities RA13_02700 SM01133 RA13_02700 RA13_02710 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RA13_02755 SM00028 Tetratricopeptide repeats RA13_02755 SM00530 Helix-turn-helix XRE-family like proteins RA13_02770 SM00752 Horizontally Transferred TransMembrane Domain RA13_02960 SM00487 DEAD-like helicases superfamily RA13_02960 SM00490 helicase superfamily c-terminal domain RA13_02975 SM01061 CAT RNA binding domain RA13_02990 SM01060 RA13_02990 RA13_03020 SM00882 Coenzyme A transferase RA13_03025 SM00882 Coenzyme A transferase RA13_03030 SM00822 RA13_03030 RA13_03035 SM00091 PAS domain RA13_03035 SM00382 ATPases associated with a variety of cellular activities RA13_03095 SM00382 ATPases associated with a variety of cellular activities RA13_03125 SM00382 ATPases associated with a variety of cellular activities RA13_03130 SM00382 ATPases associated with a variety of cellular activities RA13_03165 SM00382 ATPases associated with a variety of cellular activities RA13_03180 SM01060 RA13_03180 RA13_03255 SM00954 Region found in RelA / SpoT proteins RA13_03260 SM00363 S4 RNA-binding domain RA13_03265 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_03270 SM00028 Tetratricopeptide repeats RA13_03290 SM01061 CAT RNA binding domain RA13_03320 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RA13_03355 SM00382 ATPases associated with a variety of cellular activities RA13_03495 SM01061 CAT RNA binding domain RA13_03510 SM00640 Glycosyl hydrolases family 32 RA13_03550 SM00986 Uracil DNA glycosylase superfamily RA13_03550 SM00987 UreE urease accessory protein, C-terminal domain RA13_03670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RA13_03685 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_03725 SM00382 ATPases associated with a variety of cellular activities RA13_03755 SM00028 Tetratricopeptide repeats RA13_03795 SM00836 DALR anticodon binding domain RA13_03795 SM01016 Arginyl tRNA synthetase N terminal dom RA13_03805 SM00100 Cyclic nucleotide-monophosphate binding domain RA13_03805 SM00419 helix_turn_helix, cAMP Regulatory protein RA13_03820 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RA13_03840 SM00155 Phospholipase D. Active site motifs. RA13_03845 SM00382 ATPases associated with a variety of cellular activities RA13_03865 SM00155 Phospholipase D. Active site motifs. RA13_03895 SM00448 cheY-homologous receiver domain RA13_03920 SM00357 Cold shock protein domain RA13_03920 SM00382 ATPases associated with a variety of cellular activities RA13_03920 SM00959 Rho termination factor, N-terminal domain RA13_03935 SM00919 Malic enzyme, NAD binding domain RA13_03935 SM01274 RA13_03935 RA13_03955 SM00937 RA13_03955 RA13_03995 SM00226 Low molecular weight phosphatase family RA13_04055 SM00382 ATPases associated with a variety of cellular activities RA13_04095 SM00327 von Willebrand factor (vWF) type A domain RA13_04100 SM00327 von Willebrand factor (vWF) type A domain RA13_04115 SM00729 Elongator protein 3, MiaB family, Radical SAM RA13_04120 SM00028 Tetratricopeptide repeats RA13_04165 SM00422 helix_turn_helix, mercury resistance RA13_04170 SM00155 Phospholipase D. Active site motifs. RA13_04180 SM00858 RA13_04180 RA13_04235 SM00014 Acid phosphatase homologues RA13_04245 SM00938 Nitrogen regulatory protein P-II RA13_04280 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_04310 SM00028 Tetratricopeptide repeats RA13_04340 SM00420 helix_turn_helix, Deoxyribose operon repressor RA13_04340 SM01134 RA13_04340 RA13_04350 SM00487 DEAD-like helicases superfamily RA13_04350 SM00490 helicase superfamily c-terminal domain RA13_04380 SM00984 UDP binding domain RA13_04460 SM00344 helix_turn_helix ASNC type RA13_04495 SM00903 Flavin reductase like domain RA13_04535 SM00287 Bacterial SH3 domain homologues RA13_04550 SM00382 ATPases associated with a variety of cellular activities RA13_04565 SM00354 helix_turn _helix lactose operon repressor RA13_04595 SM00854 Bacterial capsule synthesis protein PGA_cap RA13_04650 SM00047 Lysozyme subfamily 2 RA13_04650 SM00287 Bacterial SH3 domain homologues RA13_04685 SM00382 ATPases associated with a variety of cellular activities RA13_04715 SM00646 RA13_04715 RA13_04740 SM00984 UDP binding domain RA13_04780 SM00387 Histidine kinase-like ATPases RA13_04785 SM00421 helix_turn_helix, Lux Regulon RA13_04785 SM00448 cheY-homologous receiver domain RA13_04795 SM00487 DEAD-like helicases superfamily RA13_04795 SM00490 helicase superfamily c-terminal domain RA13_04885 SM00957 SecA DEAD-like domain RA13_04885 SM00958 SecA preprotein cross-linking domain RA13_04905 SM00382 ATPases associated with a variety of cellular activities RA13_04915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_04915 SM00245 tail specific protease RA13_04925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_04960 SM00382 ATPases associated with a variety of cellular activities RA13_04995 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_04995 SM00866 RA13_04995 RA13_05105 SM00028 Tetratricopeptide repeats RA13_05155 SM00448 cheY-homologous receiver domain RA13_05155 SM00862 Transcriptional regulatory protein, C terminal RA13_05160 SM00387 Histidine kinase-like ATPases RA13_05160 SM00388 His Kinase A (phosphoacceptor) domain RA13_05165 SM00382 ATPases associated with a variety of cellular activities RA13_05270 SM00382 ATPases associated with a variety of cellular activities RA13_05275 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_05290 SM00530 Helix-turn-helix XRE-family like proteins RA13_05385 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_05385 SM00895 RA13_05385 RA13_05435 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_05450 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RA13_05470 SM01192 RA13_05470 RA13_05470 SM01193 RA13_05470 RA13_05480 SM00984 UDP binding domain RA13_05550 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_05550 SM00382 ATPases associated with a variety of cellular activities RA13_05575 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_05575 SM00382 ATPases associated with a variety of cellular activities RA13_05595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_05595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_05605 SM00530 Helix-turn-helix XRE-family like proteins RA13_05610 SM00530 Helix-turn-helix XRE-family like proteins RA13_05615 SM00530 Helix-turn-helix XRE-family like proteins RA13_05630 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_05630 SM00357 Cold shock protein domain RA13_05630 SM00955 RA13_05630 RA13_05760 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_05795 SM00382 ATPases associated with a variety of cellular activities RA13_05805 SM00382 ATPases associated with a variety of cellular activities RA13_05820 SM00835 Cupin RA13_05840 SM00448 cheY-homologous receiver domain RA13_05840 SM00862 Transcriptional regulatory protein, C terminal RA13_05845 SM00387 Histidine kinase-like ATPases RA13_05845 SM00388 His Kinase A (phosphoacceptor) domain RA13_05870 SM00382 ATPases associated with a variety of cellular activities RA13_05905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_05905 SM00387 Histidine kinase-like ATPases RA13_05910 SM00421 helix_turn_helix, Lux Regulon RA13_05910 SM00448 cheY-homologous receiver domain RA13_05950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_05950 SM00387 Histidine kinase-like ATPases RA13_05950 SM00388 His Kinase A (phosphoacceptor) domain RA13_05955 SM00448 cheY-homologous receiver domain RA13_05955 SM00862 Transcriptional regulatory protein, C terminal RA13_05960 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_05970 SM00822 RA13_05970 RA13_05985 SM00382 ATPases associated with a variety of cellular activities RA13_06000 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_06055 SM00493 RA13_06055 RA13_06070 SM00382 ATPases associated with a variety of cellular activities RA13_06070 SM00930 RA13_06070 RA13_06090 SM00382 ATPases associated with a variety of cellular activities RA13_06120 SM00465 GIY-YIG type nucleases (URI domain) RA13_06150 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_06150 SM00866 RA13_06150 RA13_06155 SM00382 ATPases associated with a variety of cellular activities RA13_06210 SM00382 ATPases associated with a variety of cellular activities RA13_06215 SM00862 Transcriptional regulatory protein, C terminal RA13_06325 SM00729 Elongator protein 3, MiaB family, Radical SAM RA13_06420 SM01240 RA13_06420 RA13_06515 SM00823 Phosphopantetheine attachment site RA13_06515 SM00824 Thioesterase RA13_06520 SM00923 MbtH-like protein RA13_06530 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RA13_06530 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RA13_06575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RA13_06615 SM00052 Putative diguanylate phosphodiesterase RA13_06640 SM00387 Histidine kinase-like ATPases RA13_06645 SM00421 helix_turn_helix, Lux Regulon RA13_06645 SM00448 cheY-homologous receiver domain RA13_06710 SM00382 ATPases associated with a variety of cellular activities RA13_06720 SM00448 cheY-homologous receiver domain RA13_06725 SM00387 Histidine kinase-like ATPases RA13_06755 SM00479 RA13_06755 RA13_06760 SM01298 RA13_06760 RA13_06765 SM00387 Histidine kinase-like ATPases RA13_06765 SM00388 His Kinase A (phosphoacceptor) domain RA13_06785 SM00344 helix_turn_helix ASNC type RA13_06795 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_06850 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_06850 SM01091 Transporter associated domain RA13_06880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_06880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_06880 SM00319 Homologues of the ligand binding domain of Tar RA13_06885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_06885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_06885 SM00319 Homologues of the ligand binding domain of Tar RA13_06890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_06890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_06890 SM00319 Homologues of the ligand binding domain of Tar RA13_06895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_06895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_06895 SM00319 Homologues of the ligand binding domain of Tar RA13_06900 SM01007 Class II Aldolase and Adducin N-terminal domain RA13_06905 SM00420 helix_turn_helix, Deoxyribose operon repressor RA13_06905 SM01134 RA13_06905 RA13_07025 SM00047 Lysozyme subfamily 2 RA13_07085 SM00244 prohibitin homologues RA13_07225 SM00642 Alpha-amylase domain RA13_07320 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RA13_07330 SM00382 ATPases associated with a variety of cellular activities RA13_07370 SM00833 Cobalamin synthesis protein cobW C-terminal domain RA13_07375 SM00947 Carbonic anhydrase RA13_07380 SM01234 RA13_07380 RA13_07425 SM00382 ATPases associated with a variety of cellular activities RA13_07495 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_07500 SM00382 ATPases associated with a variety of cellular activities RA13_07510 SM00382 ATPases associated with a variety of cellular activities RA13_07520 SM00448 cheY-homologous receiver domain RA13_07520 SM00862 Transcriptional regulatory protein, C terminal RA13_07525 SM00387 Histidine kinase-like ATPases RA13_07530 SM00382 ATPases associated with a variety of cellular activities RA13_07550 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RA13_07550 SM00091 PAS domain RA13_07565 SM00450 Rhodanese Homology Domain RA13_07600 SM00729 Elongator protein 3, MiaB family, Radical SAM RA13_07600 SM00876 Biotin and Thiamin Synthesis associated domain RA13_07625 SM00342 helix_turn_helix, arabinose operon control protein RA13_07675 SM00363 S4 RNA-binding domain RA13_07680 SM00420 helix_turn_helix, Deoxyribose operon repressor RA13_07715 SM00642 Alpha-amylase domain RA13_07735 SM00849 Metallo-beta-lactamase superfamily RA13_07740 SM00919 Malic enzyme, NAD binding domain RA13_07740 SM01274 RA13_07740 RA13_07775 SM00382 ATPases associated with a variety of cellular activities RA13_07775 SM00843 RA13_07775 RA13_07800 SM00830 Chorismate mutase type II RA13_07805 SM00354 helix_turn _helix lactose operon repressor RA13_07825 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_07845 SM00363 S4 RNA-binding domain RA13_07890 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_07920 SM00363 S4 RNA-binding domain RA13_07920 SM01390 RA13_07920 RA13_07925 SM00267 diguanylate cyclase RA13_07930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RA13_07960 SM00981 RA13_07960 RA13_08020 SM00852 Probable molybdopterin binding domain RA13_08045 SM00849 Metallo-beta-lactamase superfamily RA13_08050 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_08085 SM00919 Malic enzyme, NAD binding domain RA13_08085 SM01274 RA13_08085 RA13_08130 SM01329 RA13_08130 RA13_08140 SM00448 cheY-homologous receiver domain RA13_08140 SM00862 Transcriptional regulatory protein, C terminal RA13_08145 SM00091 PAS domain RA13_08145 SM00387 Histidine kinase-like ATPases RA13_08145 SM00388 His Kinase A (phosphoacceptor) domain RA13_08150 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RA13_08150 SM00474 3'-5' exonuclease RA13_08150 SM00475 5'-3' exonuclease RA13_08150 SM00482 DNA polymerase A domain RA13_08155 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RA13_08155 SM01232 RA13_08155 RA13_08185 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RA13_08205 SM00382 ATPases associated with a variety of cellular activities RA13_08220 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RA13_08230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RA13_08230 SM00387 Histidine kinase-like ATPases RA13_08235 SM00448 cheY-homologous receiver domain RA13_08235 SM00850 LytTr DNA-binding domain RA13_08315 SM00849 Metallo-beta-lactamase superfamily RA13_08330 SM01007 Class II Aldolase and Adducin N-terminal domain RA13_08360 SM00813 Alpha-L-arabinofuranosidase C-terminus RA13_08395 SM00967 RNA 2'-O ribose methyltransferase substrate binding RA13_08405 SM00873 B3/4 domain RA13_08405 SM00874 tRNA synthetase B5 domain RA13_08405 SM00896 Ferredoxin-fold anticodon binding domain RA13_08425 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RA13_08425 SM00481 DNA polymerase alpha chain like domain RA13_08425 SM00483 DNA polymerase X family RA13_08430 SM00463 Small MutS-related domain RA13_08430 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RA13_08430 SM00534 ATPase domain of DNA mismatch repair MUTS family RA13_08460 SM00893 Electron transfer flavoprotein domain RA13_08465 SM00893 Electron transfer flavoprotein domain RA13_08470 SM00813 Alpha-L-arabinofuranosidase C-terminus RA13_08480 SM00465 GIY-YIG type nucleases (URI domain) RA13_08515 SM00421 helix_turn_helix, Lux Regulon RA13_08520 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_08530 SM00909 Sporulation and spore germination RA13_08590 SM00917 LeuA allosteric (dimerisation) domain RA13_08595 SM01329 RA13_08595 RA13_08620 SM00382 ATPases associated with a variety of cellular activities RA13_08620 SM00994 ClpX C4-type zinc finger RA13_08620 SM01086 C-terminal, D2-small domain, of ClpB protein RA13_08630 SM00382 ATPases associated with a variety of cellular activities RA13_08630 SM00464 Found in ATP-dependent protease La (LON) RA13_08665 SM01004 Delta-aminolevulinic acid dehydratase RA13_08675 SM00257 Lysin motif RA13_08770 SM01317 RA13_08770 RA13_08815 SM00257 Lysin motif RA13_08850 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_08850 SM00866 RA13_08850 RA13_08860 SM00060 Fibronectin type 3 domain RA13_08860 SM00495 Chitin-binding domain type 3 RA13_08860 SM00636 RA13_08860 RA13_08865 SM00636 RA13_08865 RA13_08910 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RA13_08915 SM00382 ATPases associated with a variety of cellular activities RA13_08935 SM01323 RA13_08935 RA13_08995 SM00287 Bacterial SH3 domain homologues RA13_08995 SM00646 RA13_08995 RA13_09025 SM00382 ATPases associated with a variety of cellular activities RA13_09045 SM00028 Tetratricopeptide repeats RA13_09050 SM00382 ATPases associated with a variety of cellular activities RA13_09080 SM00062 Bacterial periplasmic substrate-binding proteins RA13_09080 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RA13_09085 SM00382 ATPases associated with a variety of cellular activities RA13_09095 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RA13_09105 SM00732 Likely ribonuclease with RNase H fold. RA13_09160 SM00650 Ribosomal RNA adenine dimethylases RA13_09190 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RA13_09190 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RA13_09230 SM00479 RA13_09230 RA13_09295 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_09300 SM00382 ATPases associated with a variety of cellular activities RA13_09390 SM00857 Resolvase, N terminal domain RA13_09475 SM01103 RA13_09475 RA13_09485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RA13_09505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RA13_09515 SM00849 Metallo-beta-lactamase superfamily RA13_09550 SM00838 Elongation factor G C-terminus RA13_09555 SM00729 Elongator protein 3, MiaB family, Radical SAM RA13_09575 SM00271 DnaJ molecular chaperone homology domain RA13_09590 SM00729 Elongator protein 3, MiaB family, Radical SAM RA13_09660 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RA13_09705 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_09720 SM00400 zinc finger RA13_09720 SM00493 RA13_09720 RA13_09755 SM00487 DEAD-like helicases superfamily RA13_09755 SM00490 helicase superfamily c-terminal domain RA13_09760 SM00518 AP endonuclease family 2 RA13_09795 SM00257 Lysin motif RA13_09840 SM00382 ATPases associated with a variety of cellular activities RA13_09845 SM00382 ATPases associated with a variety of cellular activities RA13_09885 SM00028 Tetratricopeptide repeats RA13_09905 SM00631 RA13_09905 RA13_09925 SM00849 Metallo-beta-lactamase superfamily RA13_09950 SM01091 Transporter associated domain RA13_09965 SM00382 ATPases associated with a variety of cellular activities RA13_10025 SM00530 Helix-turn-helix XRE-family like proteins RA13_10040 SM00487 DEAD-like helicases superfamily RA13_10040 SM00490 helicase superfamily c-terminal domain RA13_10060 SM00450 Rhodanese Homology Domain RA13_10070 SM00529 Helix-turn-helix diphteria tox regulatory element RA13_10105 SM00841 Elongation factor P, C-terminal RA13_10105 SM01185 RA13_10105 RA13_10115 SM00382 ATPases associated with a variety of cellular activities RA13_10160 SM00878 Biotin carboxylase C-terminal domain RA13_10195 SM00861 Transketolase, pyrimidine binding domain RA13_10200 SM00363 S4 RNA-binding domain RA13_10215 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_10220 SM00448 cheY-homologous receiver domain RA13_10240 SM00646 RA13_10240 RA13_10315 SM00861 Transketolase, pyrimidine binding domain RA13_10330 SM00046 Diacylglycerol kinase catalytic domain (presumed) RA13_10340 SM00062 Bacterial periplasmic substrate-binding proteins RA13_10340 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RA13_10350 SM00382 ATPases associated with a variety of cellular activities RA13_10400 SM01350 RA13_10400 RA13_10410 SM00849 Metallo-beta-lactamase superfamily RA13_10440 SM00849 Metallo-beta-lactamase superfamily RA13_10555 SM00530 Helix-turn-helix XRE-family like proteins RA13_10560 SM00870 RA13_10560 RA13_10575 SM00919 Malic enzyme, NAD binding domain RA13_10575 SM01274 RA13_10575 RA13_10615 SM00936 Penicillin-binding protein 5, C-terminal domain RA13_10625 SM00387 Histidine kinase-like ATPases RA13_10690 SM00710 Parallel beta-helix repeats RA13_10690 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses RA13_10755 SM00357 Cold shock protein domain RA13_10840 SM00363 S4 RNA-binding domain RA13_10860 SM00448 cheY-homologous receiver domain RA13_10860 SM00862 Transcriptional regulatory protein, C terminal RA13_10865 SM00091 PAS domain RA13_10865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_10865 SM00387 Histidine kinase-like ATPases RA13_10865 SM00388 His Kinase A (phosphoacceptor) domain RA13_10905 SM00487 DEAD-like helicases superfamily RA13_10905 SM00490 helicase superfamily c-terminal domain RA13_10915 SM00257 Lysin motif RA13_10935 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RA13_10975 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_10980 SM01240 RA13_10980 RA13_11030 SM00411 bacterial (prokaryotic) histone like domain RA13_11060 SM00562 RA13_11060 RA13_11065 SM00138 Methyltransferase, chemotaxis proteins RA13_11130 SM00028 Tetratricopeptide repeats RA13_11135 SM00914 RA13_11135 RA13_11170 SM00835 Cupin RA13_11190 SM00851 MGS-like domain RA13_11235 SM00479 RA13_11235 RA13_11235 SM00491 RA13_11235 RA13_11265 SM00478 endonuclease III RA13_11265 SM00525 RA13_11265 RA13_11355 SM00981 RA13_11355 RA13_11370 SM00491 RA13_11370 RA13_11385 SM00354 helix_turn _helix lactose operon repressor RA13_11450 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RA13_11450 SM00475 5'-3' exonuclease RA13_11490 SM00357 Cold shock protein domain RA13_11510 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RA13_11515 SM00567 E-Z type HEAT repeats RA13_11515 SM00932 Scaffold protein Nfu/NifU N terminal RA13_11565 SM00382 ATPases associated with a variety of cellular activities RA13_11605 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_11635 SM00342 helix_turn_helix, arabinose operon control protein RA13_11635 SM00871 Bacterial transcription activator, effector binding domain RA13_11650 SM00530 Helix-turn-helix XRE-family like proteins RA13_11665 SM00632 RA13_11665 RA13_11665 SM00642 Alpha-amylase domain RA13_11680 SM01005 Alanine racemase, C-terminal domain RA13_11730 SM00882 Coenzyme A transferase RA13_11735 SM00882 Coenzyme A transferase RA13_11780 SM00014 Acid phosphatase homologues RA13_11815 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_11815 SM00245 tail specific protease RA13_11905 SM00530 Helix-turn-helix XRE-family like proteins RA13_11950 SM00382 ATPases associated with a variety of cellular activities RA13_12005 SM00507 HNH nucleases RA13_12100 SM00047 Lysozyme subfamily 2 RA13_12105 SM00710 Parallel beta-helix repeats RA13_12130 SM00644 RA13_12130 RA13_12190 SM00257 Lysin motif RA13_12200 SM00382 ATPases associated with a variety of cellular activities RA13_12205 SM00327 von Willebrand factor (vWF) type A domain RA13_12210 SM00861 Transketolase, pyrimidine binding domain RA13_12275 SM00341 Helicase and RNase D C-terminal RA13_12275 SM00487 DEAD-like helicases superfamily RA13_12275 SM00490 helicase superfamily c-terminal domain RA13_12275 SM00956 RA13_12275 RA13_12280 SM00257 Lysin motif RA13_12295 SM00421 helix_turn_helix, Lux Regulon RA13_12295 SM00448 cheY-homologous receiver domain RA13_12330 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RA13_12345 SM00871 Bacterial transcription activator, effector binding domain RA13_12350 SM00849 Metallo-beta-lactamase superfamily RA13_12360 SM00342 helix_turn_helix, arabinose operon control protein RA13_12385 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RA13_12415 SM00822 RA13_12415 RA13_12435 SM00823 Phosphopantetheine attachment site RA13_12435 SM00825 Beta-ketoacyl synthase RA13_12445 SM00823 Phosphopantetheine attachment site RA13_12445 SM00824 Thioesterase RA13_12460 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RA13_12480 SM00829 Enoylreductase RA13_12530 SM00028 Tetratricopeptide repeats RA13_12565 SM00823 Phosphopantetheine attachment site RA13_12570 SM00823 Phosphopantetheine attachment site RA13_12575 SM00823 Phosphopantetheine attachment site RA13_12610 SM00878 Biotin carboxylase C-terminal domain RA13_12675 SM00434 DNA Topoisomerase IV RA13_12680 SM00387 Histidine kinase-like ATPases RA13_12680 SM00433 TopoisomeraseII RA13_12685 SM00881 CoA binding domain RA13_12690 SM01207 RA13_12690 RA13_12760 SM00448 cheY-homologous receiver domain RA13_12785 SM00861 Transketolase, pyrimidine binding domain RA13_12795 SM00857 Resolvase, N terminal domain RA13_12800 SM00257 Lysin motif RA13_12915 SM00382 ATPases associated with a variety of cellular activities RA13_12925 SM00850 LytTr DNA-binding domain RA13_12940 SM00849 Metallo-beta-lactamase superfamily RA13_12965 SM00422 helix_turn_helix, mercury resistance RA13_13190 SM00354 helix_turn _helix lactose operon repressor RA13_13215 SM00640 Glycosyl hydrolases family 32 RA13_13345 SM00860 SMI1 / KNR4 family RA13_13355 SM00382 ATPases associated with a variety of cellular activities RA13_13385 SM00860 SMI1 / KNR4 family RA13_13450 SM00382 ATPases associated with a variety of cellular activities RA13_13485 SM01230 RA13_13485 RA13_13490 SM00422 helix_turn_helix, mercury resistance RA13_13510 SM00857 Resolvase, N terminal domain RA13_13520 SM00506 Appr-1"-p processing enzyme RA13_13770 SM00481 DNA polymerase alpha chain like domain RA13_13825 SM00710 Parallel beta-helix repeats RA13_13980 SM00530 Helix-turn-helix XRE-family like proteins RA13_14000 SM00530 Helix-turn-helix XRE-family like proteins RA13_14070 SM00507 HNH nucleases RA13_14155 SM00465 GIY-YIG type nucleases (URI domain) RA13_14155 SM00496 Intron-encoded nuclease repeat 2 RA13_14165 SM00411 bacterial (prokaryotic) histone like domain RA13_14335 SM00710 Parallel beta-helix repeats RA13_14365 SM00028 Tetratricopeptide repeats RA13_14425 SM00860 SMI1 / KNR4 family RA13_14435 SM00860 SMI1 / KNR4 family RA13_14440 SM00318 Staphylococcal nuclease homologues RA13_14440 SM00894 Excalibur calcium-binding domain RA13_14460 SM00382 ATPases associated with a variety of cellular activities RA13_14465 SM00646 RA13_14465 RA13_14570 SM00822 RA13_14570 RA13_14570 SM00823 Phosphopantetheine attachment site RA13_14570 SM00825 Beta-ketoacyl synthase RA13_14570 SM00826 RA13_14570 RA13_14570 SM01294 RA13_14570 RA13_14575 SM00822 RA13_14575 RA13_14575 SM00823 Phosphopantetheine attachment site RA13_14575 SM00825 Beta-ketoacyl synthase RA13_14575 SM00826 RA13_14575 RA13_14575 SM01294 RA13_14575 RA13_14620 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RA13_14625 SM00849 Metallo-beta-lactamase superfamily RA13_14645 SM00853 MutL C terminal dimerisation domain RA13_14645 SM01340 RA13_14645 RA13_14650 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RA13_14650 SM00534 ATPase domain of DNA mismatch repair MUTS family RA13_14665 SM00729 Elongator protein 3, MiaB family, Radical SAM RA13_14670 SM01059 Chloramphenicol acetyltransferase RA13_14680 SM00829 Enoylreductase RA13_14695 SM00322 K homology RNA-binding domain RA13_14695 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RA13_14705 SM00382 ATPases associated with a variety of cellular activities RA13_14720 SM00530 Helix-turn-helix XRE-family like proteins RA13_14760 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_14760 SM00866 RA13_14760 RA13_14765 SM00382 ATPases associated with a variety of cellular activities RA13_14765 SM00843 RA13_14765 RA13_14780 SM00849 Metallo-beta-lactamase superfamily RA13_14785 SM01130 RA13_14785 RA13_14795 SM00859 Semialdehyde dehydrogenase, NAD binding domain RA13_14825 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_14825 SM00322 K homology RNA-binding domain RA13_14830 SM01387 RA13_14830 RA13_14835 SM00904 Riboflavin kinase RA13_14870 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_14870 SM00322 K homology RNA-binding domain RA13_14960 SM00260 Two component signalling adaptor domain RA13_14965 SM00073 Histidine Phosphotransfer domain RA13_14965 SM00260 Two component signalling adaptor domain RA13_14965 SM00387 Histidine kinase-like ATPases RA13_14965 SM01231 RA13_14965 RA13_14970 SM00448 cheY-homologous receiver domain RA13_14980 SM00962 SRP54-type protein, GTPase domain RA13_15015 SM00448 cheY-homologous receiver domain RA13_15065 SM00382 ATPases associated with a variety of cellular activities RA13_15105 SM00382 ATPases associated with a variety of cellular activities RA13_15105 SM01086 C-terminal, D2-small domain, of ClpB protein RA13_15125 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RA13_15125 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RA13_15125 SM00493 RA13_15125 RA13_15135 SM00881 CoA binding domain RA13_15205 SM00382 ATPases associated with a variety of cellular activities RA13_15205 SM00962 SRP54-type protein, GTPase domain RA13_15205 SM00963 SRP54-type protein, helical bundle domain RA13_15210 SM00968 SMC proteins Flexible Hinge Domain RA13_15215 SM00358 Double-stranded RNA binding motif RA13_15215 SM00535 Ribonuclease III family RA13_15225 SM00822 RA13_15225 RA13_15230 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RA13_15245 SM00487 DEAD-like helicases superfamily RA13_15245 SM00490 helicase superfamily c-terminal domain RA13_15260 SM01120 RA13_15260 RA13_15260 SM01121 RA13_15260 RA13_15280 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain RA13_15295 SM00220 Serine/Threonine protein kinases, catalytic domain RA13_15295 SM00740 RA13_15295 RA13_15300 SM00331 Sigma factor PP2C-like phosphatases RA13_15300 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RA13_15325 SM00487 DEAD-like helicases superfamily RA13_15325 SM00490 helicase superfamily c-terminal domain RA13_15335 SM01409 RA13_15335 RA13_15340 SM00072 Guanylate kinase homologues. RA13_15355 SM00831 Cation transporter/ATPase, N-terminus RA13_15405 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RA13_15420 SM00851 MGS-like domain RA13_15420 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RA13_15425 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RA13_15450 SM00363 S4 RNA-binding domain RA13_15480 SM00363 S4 RNA-binding domain RA13_15515 SM00382 ATPases associated with a variety of cellular activities RA13_15540 SM00864 Tubulin/FtsZ family, GTPase domain RA13_15540 SM00865 Tubulin/FtsZ family, C-terminal domain RA13_15600 SM00740 RA13_15600 RA13_15605 SM00740 RA13_15605 RA13_15665 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_15720 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_15765 SM00878 Biotin carboxylase C-terminal domain RA13_15790 SM00670 Large family of predicted nucleotide-binding domains RA13_15810 SM00838 Elongation factor G C-terminus RA13_15895 SM00861 Transketolase, pyrimidine binding domain RA13_15930 SM00849 Metallo-beta-lactamase superfamily RA13_15950 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RA13_15950 SM00091 PAS domain RA13_15950 SM00387 Histidine kinase-like ATPases RA13_15950 SM00388 His Kinase A (phosphoacceptor) domain RA13_15955 SM00966 SpoVT / AbrB like domain RA13_15980 SM00382 ATPases associated with a variety of cellular activities RA13_16005 SM00420 helix_turn_helix, Deoxyribose operon repressor RA13_16005 SM01134 RA13_16005 RA13_16010 SM01066 Carbohydrate binding domain RA13_16030 SM00382 ATPases associated with a variety of cellular activities RA13_16035 SM00382 ATPases associated with a variety of cellular activities RA13_16055 SM00852 Probable molybdopterin binding domain RA13_16155 SM00052 Putative diguanylate phosphodiesterase RA13_16170 SM00257 Lysin motif RA13_16185 SM00260 Two component signalling adaptor domain RA13_16185 SM00448 cheY-homologous receiver domain RA13_16200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RA13_16200 SM00091 PAS domain RA13_16200 SM00387 Histidine kinase-like ATPases RA13_16200 SM00388 His Kinase A (phosphoacceptor) domain RA13_16220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_16220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_16255 SM01061 CAT RNA binding domain RA13_16260 SM00354 helix_turn _helix lactose operon repressor RA13_16350 SM00382 ATPases associated with a variety of cellular activities RA13_16350 SM01086 C-terminal, D2-small domain, of ClpB protein RA13_16365 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_16370 SM00387 Histidine kinase-like ATPases RA13_16370 SM00388 His Kinase A (phosphoacceptor) domain RA13_16395 SM01007 Class II Aldolase and Adducin N-terminal domain RA13_16435 SM00091 PAS domain RA13_16435 SM00387 Histidine kinase-like ATPases RA13_16435 SM00388 His Kinase A (phosphoacceptor) domain RA13_16520 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RA13_16560 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_16575 SM00422 helix_turn_helix, mercury resistance RA13_16580 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_16580 SM00924 MgtE intracellular N domain RA13_16645 SM00855 Phosphoglycerate mutase family RA13_16660 SM00028 Tetratricopeptide repeats RA13_16685 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_16700 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RA13_16765 SM00382 ATPases associated with a variety of cellular activities RA13_16775 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RA13_16815 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RA13_16865 SM00257 Lysin motif RA13_16865 SM00644 RA13_16865 RA13_16935 SM00257 Lysin motif RA13_17035 SM00382 ATPases associated with a variety of cellular activities RA13_17050 SM00530 Helix-turn-helix XRE-family like proteins RA13_17070 SM00257 Lysin motif RA13_17070 SM00644 RA13_17070 RA13_17080 SM00028 Tetratricopeptide repeats RA13_17095 SM00858 RA13_17095 RA13_17140 SM00835 Cupin RA13_17150 SM00382 ATPases associated with a variety of cellular activities RA13_17210 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RA13_17210 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RA13_17500 SM00954 Region found in RelA / SpoT proteins RA13_17510 SM01118 RA13_17510 RA13_17575 SM00382 ATPases associated with a variety of cellular activities RA13_17580 SM00382 ATPases associated with a variety of cellular activities RA13_17630 SM00382 ATPases associated with a variety of cellular activities RA13_17635 SM00382 ATPases associated with a variety of cellular activities RA13_17645 SM00825 Beta-ketoacyl synthase RA13_17695 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RA13_17700 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RA13_17720 SM00859 Semialdehyde dehydrogenase, NAD binding domain RA13_17785 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_17815 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RA13_17885 SM00354 helix_turn _helix lactose operon repressor RA13_17895 SM00342 helix_turn_helix, arabinose operon control protein RA13_18030 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_18065 SM00894 Excalibur calcium-binding domain RA13_18075 SM00914 RA13_18075 RA13_18090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_18130 SM00855 Phosphoglycerate mutase family RA13_18150 SM00829 Enoylreductase RA13_18190 SM00849 Metallo-beta-lactamase superfamily RA13_18275 SM00382 ATPases associated with a variety of cellular activities RA13_18305 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_18350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RA13_18370 SM00382 ATPases associated with a variety of cellular activities RA13_18405 SM00729 Elongator protein 3, MiaB family, Radical SAM RA13_18465 SM00382 ATPases associated with a variety of cellular activities RA13_18470 SM00382 ATPases associated with a variety of cellular activities RA13_18525 SM01091 Transporter associated domain RA13_18535 SM00422 helix_turn_helix, mercury resistance RA13_18540 SM01091 Transporter associated domain RA13_18555 SM00563 Phosphate acyltransferases RA13_18580 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RA13_18640 SM00257 Lysin motif RA13_18645 SM00098 Alkaline phosphatase homologues RA13_18665 SM00257 Lysin motif RA13_18685 SM00421 helix_turn_helix, Lux Regulon RA13_18685 SM00448 cheY-homologous receiver domain RA13_18690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RA13_18690 SM00387 Histidine kinase-like ATPases RA13_18740 SM00116 Domain in cystathionine beta-synthase and other proteins. RA13_18750 SM00363 S4 RNA-binding domain RA13_18765 SM00091 PAS domain RA13_18765 SM00138 Methyltransferase, chemotaxis proteins RA13_18765 SM00387 Histidine kinase-like ATPases RA13_18765 SM00388 His Kinase A (phosphoacceptor) domain RA13_18795 SM00267 diguanylate cyclase RA13_18810 SM00357 Cold shock protein domain RA13_18820 SM00382 ATPases associated with a variety of cellular activities RA13_18825 SM00382 ATPases associated with a variety of cellular activities RA13_18830 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_18860 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_18870 SM00763 PrkA AAA domain RA13_18900 SM00567 E-Z type HEAT repeats RA13_18915 SM00530 Helix-turn-helix XRE-family like proteins RA13_18940 SM00062 Bacterial periplasmic substrate-binding proteins RA13_18950 SM01060 RA13_18950 RA13_19115 SM00382 ATPases associated with a variety of cellular activities RA13_19145 SM00478 endonuclease III RA13_19145 SM00525 RA13_19145 RA13_19175 SM00287 Bacterial SH3 domain homologues RA13_19250 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_19265 SM00829 Enoylreductase RA13_19305 SM00382 ATPases associated with a variety of cellular activities RA13_19310 SM00382 ATPases associated with a variety of cellular activities RA13_19315 SM00710 Parallel beta-helix repeats RA13_19365 SM00382 ATPases associated with a variety of cellular activities RA13_19410 SM00478 endonuclease III RA13_19475 SM00226 Low molecular weight phosphatase family RA13_19505 SM00354 helix_turn _helix lactose operon repressor RA13_19525 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_19525 SM00866 RA13_19525 RA13_19530 SM00642 Alpha-amylase domain RA13_19595 SM00849 Metallo-beta-lactamase superfamily RA13_19610 SM00448 cheY-homologous receiver domain RA13_19630 SM00656 RA13_19630 RA13_19660 SM00382 ATPases associated with a variety of cellular activities RA13_19665 SM00829 Enoylreductase RA13_19670 SM00487 DEAD-like helicases superfamily RA13_19670 SM00490 helicase superfamily c-terminal domain RA13_19675 SM00382 ATPases associated with a variety of cellular activities RA13_19690 SM00422 helix_turn_helix, mercury resistance RA13_19695 SM00382 ATPases associated with a variety of cellular activities RA13_19705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_19760 SM00382 ATPases associated with a variety of cellular activities RA13_19885 SM00342 helix_turn_helix, arabinose operon control protein RA13_19910 SM00342 helix_turn_helix, arabinose operon control protein RA13_19910 SM00448 cheY-homologous receiver domain RA13_19960 SM00028 Tetratricopeptide repeats RA13_19985 SM00028 Tetratricopeptide repeats RA13_20025 SM00046 Diacylglycerol kinase catalytic domain (presumed) RA13_20040 SM00845 GatB domain RA13_20075 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RA13_20075 SM00292 breast cancer carboxy-terminal domain RA13_20075 SM00532 Ligase N family RA13_20120 SM00344 helix_turn_helix ASNC type RA13_20125 SM01209 RA13_20125 RA13_20125 SM01210 RA13_20125 RA13_20130 SM00798 AICARFT/IMPCHase bienzyme RA13_20130 SM00851 MGS-like domain RA13_20155 SM01211 RA13_20155 RA13_20170 SM00998 Adenylosuccinate lyase C-terminus RA13_20180 SM01001 AIR carboxylase RA13_20225 SM00460 Transglutaminase/protease-like homologues RA13_20285 SM00829 Enoylreductase RA13_20295 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_20350 SM00829 Enoylreductase RA13_20355 SM00028 Tetratricopeptide repeats RA13_20355 SM00382 ATPases associated with a variety of cellular activities RA13_20380 SM00387 Histidine kinase-like ATPases RA13_20380 SM00421 helix_turn_helix, Lux Regulon RA13_20380 SM00448 cheY-homologous receiver domain RA13_20395 SM00883 Chaperonin 10 Kd subunit RA13_20420 SM00881 CoA binding domain RA13_20430 SM00382 ATPases associated with a variety of cellular activities RA13_20520 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_20520 SM00895 RA13_20520 RA13_20535 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_20545 SM00710 Parallel beta-helix repeats RA13_20555 SM00382 ATPases associated with a variety of cellular activities RA13_20570 SM00098 Alkaline phosphatase homologues RA13_20590 SM00257 Lysin motif RA13_20590 SM00636 RA13_20590 RA13_20630 SM00382 ATPases associated with a variety of cellular activities RA13_20635 SM00344 helix_turn_helix ASNC type RA13_20640 SM00849 Metallo-beta-lactamase superfamily RA13_20680 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_20700 SM00226 Low molecular weight phosphatase family RA13_20710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RA13_20715 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RA13_20725 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_20775 SM00347 helix_turn_helix multiple antibiotic resistance protein RA13_20790 SM01058 CarD-like/TRCF domain RA13_20795 SM00357 Cold shock protein domain RA13_20830 SM00344 helix_turn_helix ASNC type RA13_20845 SM00448 cheY-homologous receiver domain RA13_20845 SM00862 Transcriptional regulatory protein, C terminal RA13_20850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_20850 SM00387 Histidine kinase-like ATPases RA13_20850 SM00388 His Kinase A (phosphoacceptor) domain RA13_20880 SM00530 Helix-turn-helix XRE-family like proteins RA13_20890 SM00870 RA13_20890 RA13_20920 SM00860 SMI1 / KNR4 family RA13_20970 SM00731 SprT homologues. RA13_20980 SM00316 Ribosomal protein S1-like RNA-binding domain RA13_20980 SM00732 Likely ribonuclease with RNase H fold. RA13_20985 SM00331 Sigma factor PP2C-like phosphatases RA13_20985 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RA13_21005 SM00331 Sigma factor PP2C-like phosphatases RA13_21010 SM00387 Histidine kinase-like ATPases RA13_21035 SM01005 Alanine racemase, C-terminal domain RA13_21065 SM00487 DEAD-like helicases superfamily RA13_21065 SM00490 helicase superfamily c-terminal domain RA13_21120 SM00382 ATPases associated with a variety of cellular activities RA13_21135 SM00448 cheY-homologous receiver domain RA13_21140 SM00091 PAS domain RA13_21140 SM00387 Histidine kinase-like ATPases RA13_21240 SM00267 diguanylate cyclase RA13_21255 SM00344 helix_turn_helix ASNC type RA13_21260 SM00530 Helix-turn-helix XRE-family like proteins RA13_21340 SM00346 helix_turn_helix isocitrate lyase regulation RA13_21345 SM00797 Allophanate hydrolase subunit 2 RA13_21350 SM00796 Allophanate hydrolase subunit 1 RA13_21415 SM00420 helix_turn_helix, Deoxyribose operon repressor RA13_21455 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RA13_21470 SM00028 Tetratricopeptide repeats RA13_21490 SM00382 ATPases associated with a variety of cellular activities RA13_21525 SM00028 Tetratricopeptide repeats RA13_21530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_21530 SM00387 Histidine kinase-like ATPases RA13_21530 SM00388 His Kinase A (phosphoacceptor) domain RA13_21545 SM00382 ATPases associated with a variety of cellular activities RA13_21560 SM00382 ATPases associated with a variety of cellular activities RA13_21570 SM00062 Bacterial periplasmic substrate-binding proteins RA13_21605 SM00710 Parallel beta-helix repeats RA13_21645 SM00062 Bacterial periplasmic substrate-binding proteins RA13_21655 SM00382 ATPases associated with a variety of cellular activities RA13_21670 SM00345 helix_turn_helix gluconate operon transcriptional repressor RA13_21685 SM00824 Thioesterase RA13_21690 SM00823 Phosphopantetheine attachment site RA13_21690 SM00824 Thioesterase RA13_21695 SM00823 Phosphopantetheine attachment site RA13_21695 SM01294 RA13_21695 RA13_21700 SM00823 Phosphopantetheine attachment site RA13_21700 SM01294 RA13_21700 RA13_21710 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RA13_21720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RA13_21720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RA13_21740 SM00382 ATPases associated with a variety of cellular activities RA13_21765 SM00062 Bacterial periplasmic substrate-binding proteins RA13_21775 SM00833 Cobalamin synthesis protein cobW C-terminal domain RA13_21800 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RA13_21915 SM00347 helix_turn_helix multiple antibiotic resistance protein