RA13_13635 e1e9b7d2e61089f302c21c25be37c2c5 225 SUPERFAMILY SSF48168 4 150 5.23E-47 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_13635 e1e9b7d2e61089f302c21c25be37c2c5 225 SUPERFAMILY SSF51998 151 225 1.51E-20 T 13-10-2018 RA13_13635 e1e9b7d2e61089f302c21c25be37c2c5 225 Gene3D G3DSA:3.20.70.20 8 225 1.5E-40 T 13-10-2018 RA13_13635 e1e9b7d2e61089f302c21c25be37c2c5 225 Pfam PF02867 Ribonucleotide reductase, barrel domain 152 225 3.5E-19 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_13635 e1e9b7d2e61089f302c21c25be37c2c5 225 Pfam PF08343 Ribonucleotide reductase N-terminal 3 73 6.6E-26 T 13-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_13635 e1e9b7d2e61089f302c21c25be37c2c5 225 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 75 147 9.5E-16 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_07700 0d83586c2da228cd841475a98493e0b1 182 Gene3D G3DSA:3.90.1140.10 2 182 6.9E-39 T 13-10-2018 RA13_07700 0d83586c2da228cd841475a98493e0b1 182 SUPERFAMILY SSF55144 6 182 2.79E-39 T 13-10-2018 IPR009097 Cyclic phosphodiesterase RA13_07700 0d83586c2da228cd841475a98493e0b1 182 Pfam PF13563 2'-5' RNA ligase superfamily 16 138 1.5E-17 T 13-10-2018 RA13_07700 0d83586c2da228cd841475a98493e0b1 182 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 6 182 20.202 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RA13_07700 0d83586c2da228cd841475a98493e0b1 182 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 7 182 6.1E-47 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 SUPERFAMILY SSF47323 432 556 2.49E-37 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 306 327 2.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 163 176 2.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 124 139 2.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 139 155 2.6E-24 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 SUPERFAMILY SSF55190 5 115 5.89E-28 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 Gene3D G3DSA:3.30.1360.70 2 113 6.3E-29 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 Gene3D G3DSA:3.40.50.620 124 431 4.7E-177 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 Gene3D G3DSA:1.10.730.10 432 556 4.7E-177 T 13-10-2018 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 134 143 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 SMART SM00836 437 556 8.2E-57 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 SUPERFAMILY SSF52374 118 448 1.94E-98 T 13-10-2018 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 11 94 2.1E-25 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 Pfam PF05746 DALR anticodon binding domain 438 556 1.4E-38 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 7 556 1.7E-189 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 Pfam PF00750 tRNA synthetases class I (R) 104 400 1.7E-27 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 SMART SM01016 5 95 1.8E-35 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RA13_03795 823a40a7312169c5a03ac8b2eb760b31 556 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 556 28.724 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RA13_01965 d1e223d9d1f931c1a3e750708d984d8c 162 Pfam PF07508 Recombinase 83 146 3.7E-12 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 RA13_01965 d1e223d9d1f931c1a3e750708d984d8c 162 Gene3D G3DSA:1.10.10.2600 45 161 1.2E-13 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily RA13_17635 19192c8037c7b98c4599d4a2974b2ef2 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 299 2.3E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_17635 19192c8037c7b98c4599d4a2974b2ef2 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 319 1.6E-27 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_17635 19192c8037c7b98c4599d4a2974b2ef2 328 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_17635 19192c8037c7b98c4599d4a2974b2ef2 328 Gene3D G3DSA:3.40.50.300 1 327 1.9E-100 T 13-10-2018 RA13_17635 19192c8037c7b98c4599d4a2974b2ef2 328 SUPERFAMILY SSF52540 4 254 1.49E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17635 19192c8037c7b98c4599d4a2974b2ef2 328 Pfam PF00005 ABC transporter 25 183 1.3E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_17635 19192c8037c7b98c4599d4a2974b2ef2 328 SMART SM00382 33 234 8.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_16325 1ea9146eb815f25ee23841b08ce00af6 243 SUPERFAMILY SSF102114 27 118 5.89E-13 T 13-10-2018 RA13_16325 1ea9146eb815f25ee23841b08ce00af6 243 PIRSF PIRSF000370 3 243 1.2E-51 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RA13_16325 1ea9146eb815f25ee23841b08ce00af6 243 Gene3D G3DSA:3.20.20.70 5 191 4.1E-31 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_16325 1ea9146eb815f25ee23841b08ce00af6 243 Pfam PF13394 4Fe-4S single cluster domain 27 113 1.0E-9 T 13-10-2018 RA13_16325 1ea9146eb815f25ee23841b08ce00af6 243 TIGRFAM TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 4 243 1.4E-118 T 13-10-2018 IPR017742 7-carboxy-7-deazaguanine synthase KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RA13_16325 1ea9146eb815f25ee23841b08ce00af6 243 Pfam PF04055 Radical SAM superfamily 29 125 1.0E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_16325 1ea9146eb815f25ee23841b08ce00af6 243 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 5 240 39.735 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RA13_07455 94129a94ce42ae03439d78688aaf578a 633 SUPERFAMILY SSF52402 233 606 7.39E-86 T 13-10-2018 RA13_07455 94129a94ce42ae03439d78688aaf578a 633 Pfam PF13537 Glutamine amidotransferase domain 51 168 1.0E-44 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RA13_07455 94129a94ce42ae03439d78688aaf578a 633 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 548 1.8E-180 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RA13_07455 94129a94ce42ae03439d78688aaf578a 633 SUPERFAMILY SSF56235 1 223 1.46E-59 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_07455 94129a94ce42ae03439d78688aaf578a 633 Pfam PF00733 Asparagine synthase 241 611 2.8E-111 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RA13_07455 94129a94ce42ae03439d78688aaf578a 633 Gene3D G3DSA:3.60.20.10 3 188 1.7E-63 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_07455 94129a94ce42ae03439d78688aaf578a 633 PIRSF PIRSF001589 1 629 1.8E-193 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RA13_11890 cab2f386b9f74ab860dcedc01073eade 137 SUPERFAMILY SSF52091 19 126 1.55E-17 T 13-10-2018 IPR036513 STAS domain superfamily RA13_11890 cab2f386b9f74ab860dcedc01073eade 137 Gene3D G3DSA:3.30.750.24 18 136 8.2E-34 T 13-10-2018 IPR036513 STAS domain superfamily RA13_11890 cab2f386b9f74ab860dcedc01073eade 137 Pfam PF01740 STAS domain 29 126 3.0E-13 T 13-10-2018 IPR002645 STAS domain RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 Pfam PF00005 ABC transporter 379 528 7.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 Pfam PF00664 ABC transporter transmembrane region 47 313 5.8E-48 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 Gene3D G3DSA:1.20.1560.10 16 349 6.5E-92 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 SUPERFAMILY SSF90123 32 345 1.26E-78 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 ProSitePatterns PS00211 ABC transporters family signature. 500 514 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 Gene3D G3DSA:3.40.50.300 359 602 2.3E-90 T 13-10-2018 RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 SMART SM00382 388 574 2.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_16030 3feafb46818a2285f7afa40891c2c2fc 602 SUPERFAMILY SSF52540 353 598 4.66E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 7.2E-168 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 Gene3D G3DSA:3.30.1490.20 21 104 1.5E-96 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 SUPERFAMILY SSF52210 239 384 3.14E-54 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 Pfam PF00549 CoA-ligase 262 381 4.9E-26 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 Gene3D G3DSA:3.40.50.261 240 385 7.8E-57 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 Gene3D G3DSA:3.30.470.20 1 234 1.5E-96 T 13-10-2018 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 Pfam PF08442 ATP-grasp domain 2 203 2.0E-84 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 PIRSF PIRSF001554 1 385 1.9E-154 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 385 44.404 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_15140 03d04d6b5f955b0de7e64e1b1c881ec4 385 SUPERFAMILY SSF56059 1 238 7.81E-85 T 13-10-2018 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 4 757 33.951 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 6 310 1.7E-118 T 13-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 Gene3D G3DSA:3.20.20.210 8 523 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 Gene3D G3DSA:3.20.20.210 388 755 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 PIRSF PIRSF000382 3 761 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 SUPERFAMILY SSF51726 397 755 3.66E-118 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 430 752 3.1E-157 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 9 757 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RA13_16640 d268452e81d7f5da96f17a8b2207de0f 762 SUPERFAMILY SSF51726 6 372 3.01E-92 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 3.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 3.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 3.1E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 ProSitePatterns PS01117 MarR-type HTH domain signature. 68 102 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 SMART SM00347 29 129 2.6E-26 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 Gene3D G3DSA:1.10.10.10 1 144 1.5E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 Pfam PF01047 MarR family 36 93 2.3E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16365 6347378c5be59b88e3ad34fe27b4d04e 149 SUPERFAMILY SSF46785 8 143 1.08E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_19705 ede2cb514ba2bc847168ac77df5a272c 284 Gene3D G3DSA:1.10.287.950 109 284 1.2E-39 T 13-10-2018 RA13_19705 ede2cb514ba2bc847168ac77df5a272c 284 SMART SM00283 106 282 1.1E-4 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_19705 ede2cb514ba2bc847168ac77df5a272c 284 SUPERFAMILY SSF103190 52 115 2.94E-7 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_19705 ede2cb514ba2bc847168ac77df5a272c 284 SUPERFAMILY SSF58104 113 279 1.83E-43 T 13-10-2018 RA13_19705 ede2cb514ba2bc847168ac77df5a272c 284 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 149 276 2.7E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 1235 1476 2.78E-64 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 8 185 7.11E-28 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.10 1065 1421 4.8E-151 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.300.30 2936 3033 1.3E-33 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.300.30 1905 2006 7.7E-34 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF56801 427 992 2.75E-149 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF13193 AMP-binding enzyme C-terminal domain 1918 1991 2.2E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF13193 AMP-binding enzyme C-terminal domain 2949 3021 7.1E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF13193 AMP-binding enzyme C-terminal domain 877 952 2.2E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1655 1666 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 191 430 8.23E-42 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1003 1018 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.40.50.980 1535 1670 7.5E-98 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 2098 2269 2.67E-41 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 3130 3304 2.22E-36 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.30 2272 2518 6.9E-147 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2042 2057 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF47336 971 1043 3.8E-19 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF47336 2010 2083 4.03E-19 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.40.50.12780 453 863 9.6E-127 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.40.50.12780 2539 2935 5.6E-127 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF56801 2512 3060 2.35E-155 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3071 3086 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SMART SM00823 Phosphopantetheine attachment site 979 1048 0.0078 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SMART SM00823 Phosphopantetheine attachment site 3047 3115 3.5E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SMART SM00823 Phosphopantetheine attachment site 2018 2087 0.12 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 ProSitePatterns PS00455 Putative AMP-binding domain signature. 604 615 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.30 189 432 5.7E-79 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:1.10.1200.10 3034 3116 2.1E-26 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF47336 3039 3112 1.11E-20 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.30 1232 1478 4.8E-151 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00501 AMP-binding enzyme 467 869 5.3E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00501 AMP-binding enzyme 1513 1910 8.0E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00501 AMP-binding enzyme 2553 2941 2.8E-95 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 3314 3562 2.11E-38 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.10 7 374 5.7E-79 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.10 2108 2462 6.9E-147 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 2276 2516 1.78E-56 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.30 3295 3566 1.6E-73 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00550 Phosphopantetheine attachment site 981 1043 1.1E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00550 Phosphopantetheine attachment site 2019 2083 1.8E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00550 Phosphopantetheine attachment site 3049 3111 8.1E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.559.10 3117 3294 7.0E-64 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.40.50.1820 2008 2107 1.9E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.30.300.30 864 967 1.7E-31 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF56801 1474 2031 6.54E-156 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2698 2709 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3433 3586 2.0E-52 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SMART SM01294 3044 3111 0.0032 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:2.30.38.10 1823 1900 4.1E-34 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:3.40.50.980 1518 1822 7.5E-98 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1534 1934 3.9E-126 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2574 2965 8.9E-124 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 488 893 1.1E-128 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Gene3D G3DSA:1.10.1200.10 968 1052 1.6E-25 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 SUPERFAMILY SSF52777 1058 1248 6.67E-45 T 13-10-2018 RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00668 Condensation domain 4 447 7.5E-115 T 13-10-2018 IPR001242 Condensation domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00668 Condensation domain 3125 3578 6.7E-130 T 13-10-2018 IPR001242 Condensation domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00668 Condensation domain 1061 1489 2.2E-143 T 13-10-2018 IPR001242 Condensation domain RA13_21700 e89a64fdbd8b4750cc7bea17150e9d2a 3590 Pfam PF00668 Condensation domain 2099 2533 4.8E-144 T 13-10-2018 IPR001242 Condensation domain RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 Gene3D G3DSA:3.40.50.720 4 336 1.6E-151 T 13-10-2018 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 SUPERFAMILY SSF55021 349 422 4.89E-11 T 13-10-2018 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 SUPERFAMILY SSF55347 137 302 8.5E-54 T 13-10-2018 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 PIRSF PIRSF000098 1 430 7.9E-176 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 Gene3D G3DSA:3.30.70.260 344 418 1.6E-151 T 13-10-2018 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 SUPERFAMILY SSF51735 2 158 7.1E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 Pfam PF01842 ACT domain 351 416 1.2E-12 T 13-10-2018 IPR002912 ACT domain RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 183 205 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 Pfam PF00742 Homoserine dehydrogenase 137 315 5.7E-66 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 Gene3D G3DSA:3.30.360.10 136 343 1.6E-151 T 13-10-2018 RA13_06360 8b31aad8826ac91e8a9f919280204ff9 433 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 129 4.9E-28 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RA13_15000 10bd1925c65ce6b82dce5e6787ca17dc 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.5E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RA13_15000 10bd1925c65ce6b82dce5e6787ca17dc 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.5E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RA13_15000 10bd1925c65ce6b82dce5e6787ca17dc 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.5E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RA13_15000 10bd1925c65ce6b82dce5e6787ca17dc 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.1E-30 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RA13_15000 10bd1925c65ce6b82dce5e6787ca17dc 89 PIRSF PIRSF004669 1 89 5.7E-35 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 RA13_15000 10bd1925c65ce6b82dce5e6787ca17dc 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 3 87 2.6E-34 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 RA13_19490 81098e86f0f35fd469126ebb66754c9b 253 ProSitePatterns PS01028 Dehydroquinase class I active site. 114 144 - T 13-10-2018 IPR018508 3-dehydroquinate dehydratase, active site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_19490 81098e86f0f35fd469126ebb66754c9b 253 SUPERFAMILY SSF51569 1 250 2.31E-78 T 13-10-2018 RA13_19490 81098e86f0f35fd469126ebb66754c9b 253 Gene3D G3DSA:3.20.20.70 1 252 3.2E-92 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_19490 81098e86f0f35fd469126ebb66754c9b 253 Pfam PF01487 Type I 3-dehydroquinase 20 246 8.2E-69 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_19490 81098e86f0f35fd469126ebb66754c9b 253 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 17 245 1.9E-71 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_19490 81098e86f0f35fd469126ebb66754c9b 253 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 17 249 40.007 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_17465 806b7ca94a21b7a1fb99766a5bd65c55 205 Gene3D G3DSA:3.20.20.70 1 205 3.5E-58 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_17465 806b7ca94a21b7a1fb99766a5bd65c55 205 SUPERFAMILY SSF51391 3 197 5.89E-48 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_17465 806b7ca94a21b7a1fb99766a5bd65c55 205 Pfam PF02581 Thiamine monophosphate synthase 5 179 7.7E-40 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_07900 bccfe7d68b03555304b23ffa88e47ec4 214 SUPERFAMILY SSF52499 5 203 1.7E-51 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_07900 bccfe7d68b03555304b23ffa88e47ec4 214 Gene3D G3DSA:3.40.50.850 1 209 2.6E-51 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_07900 bccfe7d68b03555304b23ffa88e47ec4 214 Pfam PF00857 Isochorismatase family 14 165 1.2E-21 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RA13_02360 2133c7bfd6baa9be21d3e300545ae9bc 203 Pfam PF04239 Protein of unknown function (DUF421) 85 194 5.1E-23 T 13-10-2018 IPR007353 Protein of unknown function DUF421 RA13_02360 2133c7bfd6baa9be21d3e300545ae9bc 203 Gene3D G3DSA:3.30.240.20 77 150 1.8E-18 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_19495 d5a190461f14396c68cadd2a0d12aaa3 294 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 17 99 7.3E-28 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RA13_19495 d5a190461f14396c68cadd2a0d12aaa3 294 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 14 292 3.8E-62 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RA13_19495 d5a190461f14396c68cadd2a0d12aaa3 294 Gene3D G3DSA:3.40.50.720 113 266 5.0E-93 T 13-10-2018 RA13_19495 d5a190461f14396c68cadd2a0d12aaa3 294 SUPERFAMILY SSF51735 112 292 4.34E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19495 d5a190461f14396c68cadd2a0d12aaa3 294 Gene3D G3DSA:3.40.50.10860 16 283 5.0E-93 T 13-10-2018 RA13_19495 d5a190461f14396c68cadd2a0d12aaa3 294 SUPERFAMILY SSF53223 8 111 2.24E-33 T 13-10-2018 RA13_19495 d5a190461f14396c68cadd2a0d12aaa3 294 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 12 294 32.809 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RA13_21345 6d85dcc29fe1dec39244ef6834692cc1 335 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 23 304 5.8E-93 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RA13_21345 6d85dcc29fe1dec39244ef6834692cc1 335 SUPERFAMILY SSF50891 196 311 2.24E-7 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RA13_21345 6d85dcc29fe1dec39244ef6834692cc1 335 Gene3D G3DSA:2.40.100.10 194 333 1.9E-50 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RA13_21345 6d85dcc29fe1dec39244ef6834692cc1 335 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 2 330 1.4E-91 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RA13_21345 6d85dcc29fe1dec39244ef6834692cc1 335 SMART SM00797 22 321 5.5E-145 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RA13_18485 2c3c72fb07561166af92cffc045b1996 284 Gene3D G3DSA:3.20.10.10 118 280 3.6E-58 T 13-10-2018 RA13_18485 2c3c72fb07561166af92cffc045b1996 284 ProSitePatterns PS00770 Aminotransferases class-IV signature. 176 205 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 RA13_18485 2c3c72fb07561166af92cffc045b1996 284 Gene3D G3DSA:3.30.470.10 1 117 1.6E-33 T 13-10-2018 RA13_18485 2c3c72fb07561166af92cffc045b1996 284 Pfam PF01063 Amino-transferase class IV 29 248 5.3E-47 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RA13_18485 2c3c72fb07561166af92cffc045b1996 284 SUPERFAMILY SSF56752 2 274 2.62E-79 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RA13_18485 2c3c72fb07561166af92cffc045b1996 284 TIGRFAM TIGR01121 D_amino_aminoT: D-amino-acid transaminase 2 276 2.8E-136 T 13-10-2018 IPR005784 D-amino acid aminotransferase GO:0008483|GO:0030170|GO:0046416 KEGG: 00310+2.6.1.21|KEGG: 00330+2.6.1.21|KEGG: 00360+2.6.1.21|KEGG: 00472+2.6.1.21|KEGG: 00473+2.6.1.21 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 94 103 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 SUPERFAMILY SSF55957 357 446 2.09E-27 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 368 7.2E-36 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Gene3D G3DSA:3.40.120.10 174 362 5.5E-73 T 13-10-2018 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Gene3D G3DSA:3.30.310.50 370 448 7.5E-30 T 13-10-2018 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 444 45.129 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 SUPERFAMILY SSF53738 158 256 5.49E-26 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 3.3E-43 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 SUPERFAMILY SSF53738 3 180 9.81E-46 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 442 3.4E-186 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 253 6.4E-15 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 SUPERFAMILY SSF53738 257 366 9.03E-33 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 4.0E-19 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Gene3D G3DSA:3.40.120.10 3 155 6.7E-58 T 13-10-2018 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 Gene3D G3DSA:3.40.120.10 256 339 5.5E-73 T 13-10-2018 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 8.2E-12 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 8.2E-12 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_00655 fb766b78a22f5ab3ed63596b26eb4392 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 8.2E-12 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_12130 674bb4296aec68f3833366e2bc875f9a 336 Gene3D G3DSA:2.30.30.40 168 238 9.1E-10 T 13-10-2018 RA13_12130 674bb4296aec68f3833366e2bc875f9a 336 SMART SM00644 11 153 1.3E-41 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_12130 674bb4296aec68f3833366e2bc875f9a 336 SUPERFAMILY SSF55846 1 153 3.01E-50 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_12130 674bb4296aec68f3833366e2bc875f9a 336 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 22 140 9.8E-26 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_12130 674bb4296aec68f3833366e2bc875f9a 336 Gene3D G3DSA:3.40.80.10 1 154 8.1E-58 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF52777 2272 2521 5.23E-32 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.300.30 869 965 7.3E-31 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.300.30 1896 1996 9.0E-33 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.559.30 192 444 9.0E-131 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2031 2046 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF13193 AMP-binding enzyme C-terminal domain 882 951 2.1E-7 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF13193 AMP-binding enzyme C-terminal domain 1909 1982 5.7E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.559.30 1224 1469 4.0E-153 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF52777 1057 1240 2.78E-43 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF52777 13 190 1.22E-45 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 2392 2545 3.3E-46 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF00550 Phosphopantetheine attachment site 2009 2070 1.5E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF00550 Phosphopantetheine attachment site 979 1040 4.9E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF00501 AMP-binding enzyme 470 874 1.2E-102 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF00501 AMP-binding enzyme 1506 1901 1.5E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.559.10 1063 1414 4.0E-153 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF52777 2080 2258 4.34E-38 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.40.50.12780 1491 1895 2.2E-139 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.40.50.12780 457 868 4.1E-137 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SMART SM00823 Phosphopantetheine attachment site 2007 2075 0.0011 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SMART SM00823 Phosphopantetheine attachment site 977 1046 0.0022 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF47336 1999 2071 5.1E-18 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.559.10 2075 2253 2.2E-61 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF47336 969 1043 3.89E-18 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF52777 1227 1474 1.56E-65 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF56801 428 989 8.5E-160 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.559.30 2254 2527 1.1E-64 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 491 898 6.5E-135 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1527 1925 5.6E-131 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF00668 Condensation domain 1059 1485 5.2E-139 T 13-10-2018 IPR001242 Condensation domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF00668 Condensation domain 2084 2537 4.2E-101 T 13-10-2018 IPR001242 Condensation domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Pfam PF00668 Condensation domain 8 449 1.1E-133 T 13-10-2018 IPR001242 Condensation domain RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:3.30.559.10 13 381 9.0E-131 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 ProSitePatterns PS00455 Putative AMP-binding domain signature. 609 620 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF52777 191 433 3.78E-48 T 13-10-2018 RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:1.10.1200.10 966 1048 5.3E-25 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 Gene3D G3DSA:1.10.1200.10 1997 2074 1.4E-23 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1648 1659 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12575 dd03da5786d5cad386b5b69ed645902d 2552 SUPERFAMILY SSF56801 1463 2020 1.83E-154 T 13-10-2018 RA13_16390 5828a77e5856c396294bf2032a5c316f 177 Pfam PF03079 ARD/ARD' family 4 169 9.6E-50 T 13-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 RA13_16390 5828a77e5856c396294bf2032a5c316f 177 SUPERFAMILY SSF51182 11 174 2.25E-33 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_16390 5828a77e5856c396294bf2032a5c316f 177 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 176 29.636 T 13-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 RA13_16390 5828a77e5856c396294bf2032a5c316f 177 Gene3D G3DSA:2.60.120.10 1 171 3.3E-58 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_15540 722d43d63866afa047264f15215bd3dc 381 Gene3D G3DSA:3.30.1330.20 221 332 3.0E-41 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 Pfam PF12327 FtsZ family, C-terminal domain 222 315 8.2E-32 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal RA13_15540 722d43d63866afa047264f15215bd3dc 381 SUPERFAMILY SSF52490 13 208 9.03E-72 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 SUPERFAMILY SSF55307 204 315 1.05E-42 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 173 1.5E-44 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RA13_15540 722d43d63866afa047264f15215bd3dc 381 PRINTS PR00423 Cell division protein FtsZ signature 189 211 1.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 PRINTS PR00423 Cell division protein FtsZ signature 98 118 1.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 PRINTS PR00423 Cell division protein FtsZ signature 126 147 1.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 PRINTS PR00423 Cell division protein FtsZ signature 212 233 1.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RA13_15540 722d43d63866afa047264f15215bd3dc 381 SMART SM00865 207 324 1.4E-53 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 357 39.217 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RA13_15540 722d43d63866afa047264f15215bd3dc 381 Gene3D G3DSA:3.40.50.1440 6 220 1.9E-83 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RA13_15540 722d43d63866afa047264f15215bd3dc 381 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 343 1.5E-141 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RA13_15540 722d43d63866afa047264f15215bd3dc 381 SMART SM00864 13 205 5.0E-116 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RA13_12710 02b7ebd10b9884953d26da69f2d97b8a 79 TIGRFAM TIGR03090 SASP_tlp: small, acid-soluble spore protein tlp 7 73 3.4E-30 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like RA13_12710 02b7ebd10b9884953d26da69f2d97b8a 79 Hamap MF_01506 Small, acid-soluble spore protein Tlp [tlp]. 1 79 31.713 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like RA13_11720 9f4d3855bad5bfb07d63fbf044442f3a 42 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 19 41 1.2E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_11720 9f4d3855bad5bfb07d63fbf044442f3a 42 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 18 41 8.4E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_21440 346ced1fb171167bb79943f5e7da41bb 462 Gene3D G3DSA:3.40.309.10 238 430 1.4E-181 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_21440 346ced1fb171167bb79943f5e7da41bb 462 Pfam PF00171 Aldehyde dehydrogenase family 4 457 7.7E-173 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_21440 346ced1fb171167bb79943f5e7da41bb 462 PIRSF PIRSF036492 14 459 4.5E-85 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RA13_21440 346ced1fb171167bb79943f5e7da41bb 462 SUPERFAMILY SSF53720 4 460 2.23E-169 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_21440 346ced1fb171167bb79943f5e7da41bb 462 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 7 456 1.2E-228 T 13-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 RA13_21440 346ced1fb171167bb79943f5e7da41bb 462 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 259 270 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_21440 346ced1fb171167bb79943f5e7da41bb 462 Gene3D G3DSA:3.40.605.10 4 452 1.4E-181 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_12375 2eef5e44a63673c4fd6198d6e130d1b5 249 Pfam PF00561 alpha/beta hydrolase fold 13 236 4.8E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_12375 2eef5e44a63673c4fd6198d6e130d1b5 249 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 91 1.4E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_12375 2eef5e44a63673c4fd6198d6e130d1b5 249 PRINTS PR00111 Alpha/beta hydrolase fold signature 37 52 1.4E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_12375 2eef5e44a63673c4fd6198d6e130d1b5 249 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 1.4E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_12375 2eef5e44a63673c4fd6198d6e130d1b5 249 SUPERFAMILY SSF53474 2 248 1.71E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_12375 2eef5e44a63673c4fd6198d6e130d1b5 249 Gene3D G3DSA:3.40.50.1820 1 249 8.1E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_15330 cceb0d1415a4b2959e4c0c97f5cce20c 406 Gene3D G3DSA:3.40.50.1950 1 185 9.4E-62 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RA13_15330 cceb0d1415a4b2959e4c0c97f5cce20c 406 Gene3D G3DSA:3.40.50.10300 186 403 1.6E-79 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RA13_15330 cceb0d1415a4b2959e4c0c97f5cce20c 406 Pfam PF02441 Flavoprotein 6 175 2.2E-45 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RA13_15330 cceb0d1415a4b2959e4c0c97f5cce20c 406 SUPERFAMILY SSF102645 186 398 2.62E-71 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RA13_15330 cceb0d1415a4b2959e4c0c97f5cce20c 406 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 187 369 1.5E-70 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RA13_15330 cceb0d1415a4b2959e4c0c97f5cce20c 406 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 2 395 5.4E-160 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 RA13_15330 cceb0d1415a4b2959e4c0c97f5cce20c 406 SUPERFAMILY SSF52507 2 178 6.15E-62 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RA13_15395 e7bff9abc562a0137270b531711ad1e3 233 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 38 209 2.6E-56 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RA13_15395 e7bff9abc562a0137270b531711ad1e3 233 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 1 233 42.546 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RA13_15395 e7bff9abc562a0137270b531711ad1e3 233 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 43 231 2.7E-84 T 13-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 RA13_15395 e7bff9abc562a0137270b531711ad1e3 233 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 24 233 5.7E-103 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RA13_15395 e7bff9abc562a0137270b531711ad1e3 233 PIRSF PIRSF000857 5 233 1.2E-89 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RA13_15395 e7bff9abc562a0137270b531711ad1e3 233 SUPERFAMILY SSF52402 17 197 6.28E-54 T 13-10-2018 RA13_15395 e7bff9abc562a0137270b531711ad1e3 233 Gene3D G3DSA:3.40.50.620 10 233 1.2E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 Gene3D G3DSA:1.20.120.1320 39 135 2.7E-73 T 13-10-2018 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 SUPERFAMILY SSF55021 371 449 1.24E-21 T 13-10-2018 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 Gene3D G3DSA:3.40.1160.10 3 287 2.7E-73 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 448 9.1E-75 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 Gene3D G3DSA:3.30.2130.10 289 451 7.5E-55 T 13-10-2018 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 PIRSF PIRSF000726 1 451 2.6E-73 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 SUPERFAMILY SSF55021 296 360 2.38E-7 T 13-10-2018 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 Pfam PF00696 Amino acid kinase family 2 276 5.3E-39 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 SUPERFAMILY SSF53633 1 290 2.49E-66 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_21505 ddcdcf6ac6bd8f2e4217abe9b3620efc 454 Pfam PF13840 ACT domain 380 444 7.9E-8 T 13-10-2018 IPR027795 CASTOR, ACT domain RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 Gene3D G3DSA:3.40.1190.10 91 292 9.7E-53 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 Pfam PF02875 Mur ligase family, glutamate ligase domain 295 378 1.1E-18 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 Gene3D G3DSA:3.40.50.720 3 89 4.6E-21 T 13-10-2018 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 1 432 34.327 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 Pfam PF01225 Mur ligase family, catalytic domain 4 101 5.7E-24 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 Gene3D G3DSA:3.90.190.20 293 430 1.9E-38 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 4 430 5.6E-146 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 SUPERFAMILY SSF53623 87 293 8.5E-59 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 SUPERFAMILY SSF53244 294 428 4.58E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 Pfam PF08245 Mur ligase middle domain 106 275 6.0E-26 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RA13_07780 91de8dcf54c52757675ac6e60720bf7a 432 SUPERFAMILY SSF51984 4 88 2.35E-21 T 13-10-2018 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 2 169 1.8E-30 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 SUPERFAMILY SSF53098 5 189 9.19E-57 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 Gene3D G3DSA:3.30.420.10 1 172 2.2E-51 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 Hamap MF_02206 3'-5' exonuclease DinG [dinG]. 2 929 26.729 T 13-10-2018 IPR006310 3'-5' exonuclease DinG GO:0005524|GO:0008408 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 Gene3D G3DSA:3.40.50.300 256 511 2.5E-38 T 13-10-2018 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 Pfam PF00929 Exonuclease 7 159 4.4E-37 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 Pfam PF13307 Helicase C-terminal domain 752 909 5.7E-36 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 SMART SM00491 763 897 7.5E-47 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 Gene3D G3DSA:3.40.50.300 716 920 1.4E-38 T 13-10-2018 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 SMART SM00479 5 172 7.0E-52 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 Pfam PF04851 Type III restriction enzyme, res subunit 257 469 4.1E-7 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 TIGRFAM TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase 5 913 7.6E-253 T 13-10-2018 IPR006310 3'-5' exonuclease DinG GO:0005524|GO:0008408 RA13_11235 189e1385ead6c67e2f7fc99baa3f68e6 930 SUPERFAMILY SSF52540 272 891 7.45E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 SMART SM00490 386 466 5.6E-21 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 SUPERFAMILY SSF52540 168 518 5.15E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 SMART SM00487 56 236 6.8E-33 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 SUPERFAMILY SSF52540 25 259 1.4E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 Pfam PF00176 SNF2 family N-terminal domain 79 314 6.8E-35 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 Gene3D G3DSA:3.40.50.300 271 549 4.5E-52 T 13-10-2018 RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 Gene3D G3DSA:3.40.50.10810 62 261 1.1E-41 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RA13_10040 d840a6d216ce178864f5fa36ea799e02 556 Pfam PF00271 Helicase conserved C-terminal domain 364 466 6.2E-21 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_09115 48e285ba54f253a26f1fc905f10a3380 367 Pfam PF02618 YceG-like family 59 358 1.4E-85 T 13-10-2018 IPR003770 Endolytic murein transglycosylase RA13_09115 48e285ba54f253a26f1fc905f10a3380 367 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 25 364 35.093 T 13-10-2018 IPR003770 Endolytic murein transglycosylase RA13_09115 48e285ba54f253a26f1fc905f10a3380 367 Gene3D G3DSA:3.30.160.60 332 367 6.2E-7 T 13-10-2018 RA13_09115 48e285ba54f253a26f1fc905f10a3380 367 Gene3D G3DSA:1.10.8.1150 53 126 7.7E-27 T 13-10-2018 RA13_09115 48e285ba54f253a26f1fc905f10a3380 367 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 19 365 1.7E-139 T 13-10-2018 IPR003770 Endolytic murein transglycosylase RA13_12515 c5540050f29f36d3c60c5fc25f8b8111 146 TIGRFAM TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin 10 134 8.3E-38 T 13-10-2018 IPR006480 Bacteriophage holin family RA13_12515 c5540050f29f36d3c60c5fc25f8b8111 146 Pfam PF05105 Bacteriophage holin family 18 124 3.9E-28 T 13-10-2018 IPR006480 Bacteriophage holin family RA13_11305 8342796c0e0b2b148e2453c82ce144c3 62 Pfam PF14178 YppF-like protein 1 58 1.3E-26 T 13-10-2018 IPR025553 YppF-like protein RA13_11305 8342796c0e0b2b148e2453c82ce144c3 62 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 62 2.0E-26 T 13-10-2018 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 46.921 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 SUPERFAMILY SSF81271 282 363 2.11E-36 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 PIRSF PIRSF006641 1 366 1.3E-166 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 Gene3D G3DSA:1.10.150.300 113 200 2.5E-159 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 SUPERFAMILY SSF52540 3 304 4.21E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 4.5E-40 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 Gene3D G3DSA:3.40.50.300 4 281 2.5E-159 T 13-10-2018 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.8E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.8E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.8E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.8E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 Gene3D G3DSA:3.10.20.30 48 364 2.5E-159 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 2.7E-158 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RA13_01885 c61635325b00861cce3c898e4dc9f09f 366 Pfam PF01926 50S ribosome-binding GTPase 5 126 1.3E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_05125 e096caad437886a8990a36a8fe48b48f 295 Pfam PF03668 P-loop ATPase protein family 9 292 9.0E-142 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 RA13_05125 e096caad437886a8990a36a8fe48b48f 295 PIRSF PIRSF005052 9 294 3.9E-109 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 RA13_05125 e096caad437886a8990a36a8fe48b48f 295 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 9 291 42.096 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 RA13_05125 e096caad437886a8990a36a8fe48b48f 295 Gene3D G3DSA:3.40.50.300 6 176 4.7E-5 T 13-10-2018 RA13_05125 e096caad437886a8990a36a8fe48b48f 295 SUPERFAMILY SSF52540 11 166 1.98E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 314 1.0E-49 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 Gene3D G3DSA:3.40.366.10 6 286 4.3E-101 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 9.0E-129 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 SUPERFAMILY SSF55048 128 193 1.96E-15 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 PIRSF PIRSF000446 1 311 3.8E-137 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 Pfam PF00698 Acyl transferase domain 6 289 5.1E-47 T 13-10-2018 IPR014043 Acyl transferase RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 SUPERFAMILY SSF52151 4 310 5.23E-80 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RA13_15230 a46fb7f076b4a31a898114a2f0065e2e 318 Gene3D G3DSA:3.30.70.250 126 199 4.3E-101 T 13-10-2018 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Pfam PF14791 DNA polymerase beta thumb 253 314 1.4E-16 T 13-10-2018 IPR029398 DNA polymerase beta, thumb domain RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Pfam PF14716 Helix-hairpin-helix domain 4 68 4.7E-16 T 13-10-2018 IPR010996 DNA polymerase beta-like, N-terminal domain RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 PIRSF PIRSF005047 1 570 7.5E-238 T 13-10-2018 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Gene3D G3DSA:3.30.210.10 259 324 1.2E-15 T 13-10-2018 IPR037160 DNA polymerase, thumb domain superfamily RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Gene3D G3DSA:1.10.150.110 1 82 4.7E-18 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SUPERFAMILY SSF89550 334 569 3.14E-53 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SMART SM00481 336 415 3.4E-21 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SUPERFAMILY SSF81301 152 314 1.18E-41 T 13-10-2018 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Gene3D G3DSA:3.20.20.140 325 570 1.7E-74 T 13-10-2018 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Gene3D G3DSA:3.30.460.10 152 258 2.5E-21 T 13-10-2018 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SUPERFAMILY SSF47802 1 81 6.93E-19 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SMART SM00278 48 67 180.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SMART SM00278 88 107 32.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SMART SM00278 123 142 40.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Pfam PF14520 Helix-hairpin-helix domain 90 144 1.6E-7 T 13-10-2018 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Gene3D G3DSA:1.10.150.20 83 146 8.2E-20 T 13-10-2018 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 Pfam PF02811 PHP domain 337 498 4.0E-7 T 13-10-2018 IPR004013 PHP domain GO:0003824 RA13_08425 df68b1a22e2d555c77b6cbff36eb5016 570 SMART SM00483 1 314 9.4E-110 T 13-10-2018 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 RA13_08735 9f1e491fbae1de37de63d1671f54e6d7 226 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 8 210 22.2 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 RA13_08735 9f1e491fbae1de37de63d1671f54e6d7 226 Gene3D G3DSA:2.160.20.70 101 224 5.2E-35 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 RA13_08735 9f1e491fbae1de37de63d1671f54e6d7 226 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 108 206 1.7E-30 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 RA13_08735 9f1e491fbae1de37de63d1671f54e6d7 226 Gene3D G3DSA:3.30.160.540 7 87 8.0E-32 T 13-10-2018 RA13_08735 9f1e491fbae1de37de63d1671f54e6d7 226 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 8 209 4.5E-52 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 RA13_08735 9f1e491fbae1de37de63d1671f54e6d7 226 SUPERFAMILY SSF63848 106 210 1.15E-29 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 RA13_16920 49b979e310c9cadfb73925c854de13fc 125 Gene3D G3DSA:3.10.180.10 7 125 3.6E-42 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_16920 49b979e310c9cadfb73925c854de13fc 125 SUPERFAMILY SSF54593 3 122 2.06E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_16920 49b979e310c9cadfb73925c854de13fc 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 122 1.7E-12 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 Hamap MF_01669 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [iolD]. 2 637 60.889 T 13-10-2018 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes GO:0000287|GO:0016787|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 8 196 1.5E-29 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 SUPERFAMILY SSF52518 3 210 1.66E-29 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 SUPERFAMILY SSF52467 212 381 7.98E-37 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 476 495 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 Gene3D G3DSA:3.40.50.970 414 604 1.3E-47 T 13-10-2018 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 Gene3D G3DSA:3.40.50.1220 213 403 3.5E-33 T 13-10-2018 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 221 354 6.7E-32 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 Gene3D G3DSA:3.40.50.970 2 207 2.6E-29 T 13-10-2018 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 6 634 4.6E-268 T 13-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 SUPERFAMILY SSF52518 417 630 1.11E-56 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_02580 95765b9757e25267864d9fcf6d8ce396 637 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 440 592 5.7E-42 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 SMART SM00344 1 105 8.0E-25 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.8E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.8E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.8E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 Gene3D G3DSA:1.10.10.10 2 51 6.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 Pfam PF01037 Lrp/AsnC ligand binding domain 69 131 6.6E-9 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 SUPERFAMILY SSF54909 62 132 2.52E-10 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 Gene3D G3DSA:3.30.70.920 52 136 1.4E-13 T 13-10-2018 RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 SUPERFAMILY SSF46785 1 59 5.33E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RA13_20120 0b0014c8273dfd6ba4d53e250649d26d 140 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 3.6E-17 T 13-10-2018 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 Hamap MF_00670 Altronate oxidoreductase [uxaB]. 1 478 54.658 T 13-10-2018 IPR023668 Altronate oxidoreductase GO:0009026|GO:0055114 KEGG: 00040+1.1.1.58 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 18 172 3.1E-20 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 SUPERFAMILY SSF51735 11 267 5.9E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 204 421 8.9E-52 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 SUPERFAMILY SSF48179 273 477 1.09E-44 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 PRINTS PR00084 Mannitol dehydrogenase signature 205 218 2.5E-6 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 PRINTS PR00084 Mannitol dehydrogenase signature 19 29 2.5E-6 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 PRINTS PR00084 Mannitol dehydrogenase signature 164 177 2.5E-6 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 PRINTS PR00084 Mannitol dehydrogenase signature 235 250 2.5E-6 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 Gene3D G3DSA:1.10.1040.10 272 480 1.4E-53 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_17100 cad3bcb1612f52a9eb8d74af1b21ce98 483 Gene3D G3DSA:3.40.50.720 4 268 2.3E-55 T 13-10-2018 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Gene3D G3DSA:3.40.50.140 1 134 1.6E-54 T 13-10-2018 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 SMART SM00437 242 510 1.4E-139 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 642 56.241 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 SMART SM00493 3 103 3.4E-34 T 13-10-2018 IPR006171 TOPRIM domain RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 SUPERFAMILY SSF57783 570 613 6.89E-14 T 13-10-2018 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Pfam PF01131 DNA topoisomerase 128 547 6.4E-139 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Gene3D G3DSA:1.10.460.10 135 550 3.0E-169 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 473 487 5.8E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 5.8E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 370 386 5.8E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 293 302 5.8E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 5.8E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 616 655 9.3E-14 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 576 613 1.9E-15 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 658 689 0.019 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Pfam PF01751 Toprim domain 5 113 3.4E-30 T 13-10-2018 IPR006171 TOPRIM domain RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 279 302 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 SUPERFAMILY SSF56712 4 666 2.35E-202 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 611 1.0E-277 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Gene3D G3DSA:2.70.20.10 184 457 3.0E-169 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Gene3D G3DSA:1.10.290.10 250 385 3.0E-169 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 Gene3D G3DSA:3.30.65.10 559 618 3.2E-13 T 13-10-2018 RA13_15125 163219955f9769699bf0516f6a6aa0ec 691 SMART SM00436 104 192 1.3E-53 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 SMART SM00956 407 509 5.1E-37 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 SUPERFAMILY SSF47819 515 590 8.5E-25 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 SMART SM00490 244 325 4.6E-28 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Pfam PF16124 RecQ zinc-binding 337 398 1.4E-17 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Pfam PF00270 DEAD/DEAH box helicase 20 182 3.6E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Gene3D G3DSA:1.10.150.80 512 591 2.0E-25 T 13-10-2018 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Gene3D G3DSA:1.10.10.10 335 511 3.9E-47 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Gene3D G3DSA:3.40.50.300 203 334 1.5E-39 T 13-10-2018 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Pfam PF00271 Helicase conserved C-terminal domain 217 324 6.6E-19 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 SMART SM00487 14 212 4.3E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 SMART SM00341 514 591 8.3E-25 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Pfam PF09382 RQC domain 407 509 1.5E-28 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Gene3D G3DSA:3.40.50.300 1 202 4.3E-74 T 13-10-2018 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 458 1.0E-144 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 Pfam PF00570 HRDC domain 518 584 1.1E-22 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 6 587 1.0E-228 T 13-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 SUPERFAMILY SSF52540 60 347 4.04E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_12275 26007093a3493faa154b2d7854d1c0f2 592 SUPERFAMILY SSF46785 397 539 3.81E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_01355 f5c292b74ecad72261dbe0dae099f559 258 Gene3D G3DSA:3.30.420.40 89 256 1.9E-64 T 13-10-2018 RA13_01355 f5c292b74ecad72261dbe0dae099f559 258 Pfam PF03309 Type III pantothenate kinase 2 206 8.7E-76 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RA13_01355 f5c292b74ecad72261dbe0dae099f559 258 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 250 5.8E-94 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RA13_01355 f5c292b74ecad72261dbe0dae099f559 258 Gene3D G3DSA:3.30.420.40 1 88 4.3E-33 T 13-10-2018 RA13_01355 f5c292b74ecad72261dbe0dae099f559 258 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 37.937 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RA13_01355 f5c292b74ecad72261dbe0dae099f559 258 SUPERFAMILY SSF53067 2 122 7.26E-41 T 13-10-2018 RA13_01355 f5c292b74ecad72261dbe0dae099f559 258 SUPERFAMILY SSF53067 124 253 1.12E-41 T 13-10-2018 RA13_07260 7a4755d778ba8ff8b22a3aa1abd2219e 377 Pfam PF13439 Glycosyltransferase Family 4 19 165 2.8E-11 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RA13_07260 7a4755d778ba8ff8b22a3aa1abd2219e 377 SUPERFAMILY SSF53756 2 374 7.33E-68 T 13-10-2018 RA13_07260 7a4755d778ba8ff8b22a3aa1abd2219e 377 Gene3D G3DSA:3.40.50.2000 174 375 6.3E-44 T 13-10-2018 RA13_07260 7a4755d778ba8ff8b22a3aa1abd2219e 377 Pfam PF00534 Glycosyl transferases group 1 180 353 1.2E-41 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_07260 7a4755d778ba8ff8b22a3aa1abd2219e 377 Gene3D G3DSA:3.40.50.2000 1 173 4.2E-15 T 13-10-2018 RA13_17145 6ba75478ed0491840827c0e9f048788c 325 Pfam PF13536 Putative multidrug resistance efflux transporter 38 305 2.1E-106 T 13-10-2018 IPR032713 Putative multidrug resistance efflux transporter RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 321 378 1.3E-13 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 471 1.4E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 504 1.4E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 485 1.4E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 523 1.4E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Gene3D G3DSA:3.30.450.20 198 312 2.1E-20 T 13-10-2018 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 422 525 8.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Gene3D G3DSA:3.30.450.20 31 169 1.1E-43 T 13-10-2018 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Gene3D G3DSA:3.30.565.10 376 524 1.3E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 SUPERFAMILY SSF55874 388 524 5.89E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 SUPERFAMILY SSF103190 36 168 2.51E-39 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 SMART SM00387 418 526 2.5E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Gene3D G3DSA:1.10.287.130 313 375 2.8E-7 T 13-10-2018 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 SUPERFAMILY SSF55890 322 392 1.11E-15 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Pfam PF00989 PAS fold 212 311 8.8E-6 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_06725 b76c3ad5a57317ba32d372afb82c2f7a 532 Pfam PF17203 Single cache domain 3 34 169 5.7E-26 T 13-10-2018 IPR033463 Single cache domain 3 RA13_12145 d183867d1729db587c38a85729da8193 163 SUPERFAMILY SSF160424 4 159 1.57E-53 T 13-10-2018 IPR036170 Probable antitoxin YezG superfamily RA13_12145 d183867d1729db587c38a85729da8193 163 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 1 154 6.1E-52 T 13-10-2018 IPR006728 Protein of unknown function DUF600 RA13_12145 d183867d1729db587c38a85729da8193 163 Pfam PF04634 Protein of unknown function, DUF600 6 151 9.4E-55 T 13-10-2018 IPR006728 Protein of unknown function DUF600 RA13_12145 d183867d1729db587c38a85729da8193 163 Gene3D G3DSA:3.30.500.20 1 118 3.7E-43 T 13-10-2018 RA13_05290 2cd9f536976619ac59cf8e3a8fafc069 151 SUPERFAMILY SSF47406 123 147 1.2E-5 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 RA13_05290 2cd9f536976619ac59cf8e3a8fafc069 151 Pfam PF08671 Anti-repressor SinI 123 147 7.3E-9 T 13-10-2018 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain GO:0006355|GO:0046983 RA13_05290 2cd9f536976619ac59cf8e3a8fafc069 151 Pfam PF01381 Helix-turn-helix 6 61 5.4E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_05290 2cd9f536976619ac59cf8e3a8fafc069 151 SUPERFAMILY SSF47413 2 64 1.21E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_05290 2cd9f536976619ac59cf8e3a8fafc069 151 Gene3D G3DSA:1.10.260.40 1 111 1.3E-21 T 13-10-2018 RA13_05290 2cd9f536976619ac59cf8e3a8fafc069 151 SMART SM00530 5 61 6.0E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_16810 d2f28254b11665e28e24c42c80a1b22e 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 99 1.4E-13 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RA13_16810 d2f28254b11665e28e24c42c80a1b22e 272 Gene3D G3DSA:1.10.3730.10 163 266 2.5E-13 T 13-10-2018 RA13_16810 d2f28254b11665e28e24c42c80a1b22e 272 SUPERFAMILY SSF51735 3 158 1.17E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_16810 d2f28254b11665e28e24c42c80a1b22e 272 SUPERFAMILY SSF48179 160 266 9.18E-16 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_16810 d2f28254b11665e28e24c42c80a1b22e 272 PIRSF PIRSF000193 1 267 1.5E-68 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_16810 d2f28254b11665e28e24c42c80a1b22e 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 160 264 2.6E-13 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_16810 d2f28254b11665e28e24c42c80a1b22e 272 Gene3D G3DSA:3.40.50.720 1 162 6.2E-29 T 13-10-2018 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 287 294 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Gene3D G3DSA:3.90.600.10 325 422 1.6E-33 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 SUPERFAMILY SSF51246 324 417 3.56E-27 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 417 42.839 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 SUPERFAMILY SSF52440 2 101 7.48E-33 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 8.4E-86 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Gene3D G3DSA:3.30.1490.20 119 188 3.0E-27 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 SMART SM01210 325 417 2.3E-43 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 SMART SM01209 101 293 5.4E-131 T 13-10-2018 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 SUPERFAMILY SSF56059 102 321 3.54E-63 T 13-10-2018 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Gene3D G3DSA:3.30.470.20 189 324 1.5E-61 T 13-10-2018 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Gene3D G3DSA:3.40.50.20 1 93 1.4E-34 T 13-10-2018 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 326 415 3.2E-27 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 417 1.4E-174 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20125 efb3a0d7b2b418a062d3e2e4b46f5961 422 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 9.4E-32 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_05520 cad41cfbe6f31f63cd971c161214e196 411 Pfam PF07690 Major Facilitator Superfamily 20 356 1.5E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_05520 cad41cfbe6f31f63cd971c161214e196 411 SUPERFAMILY SSF103473 15 397 1.7E-30 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_05520 cad41cfbe6f31f63cd971c161214e196 411 Gene3D G3DSA:1.20.1250.20 12 398 4.7E-27 T 13-10-2018 RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 20 375 51.864 T 13-10-2018 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 Pfam PF14306 PUA-like domain 4 153 2.4E-48 T 13-10-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 Pfam PF01747 ATP-sulfurylase 161 371 3.8E-92 T 13-10-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 Gene3D G3DSA:3.40.50.620 161 373 2.3E-94 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 SUPERFAMILY SSF88697 4 156 1.09E-47 T 13-10-2018 IPR015947 PUA-like superfamily RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 5 371 5.0E-147 T 13-10-2018 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 SUPERFAMILY SSF52374 159 371 1.13E-83 T 13-10-2018 RA13_15385 bebc89a7363803b1fa2061acad2f21d1 382 Gene3D G3DSA:3.10.400.10 3 153 8.9E-45 T 13-10-2018 RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 SUPERFAMILY SSF55785 21 131 2.58E-26 T 13-10-2018 IPR035965 PAS domain superfamily RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 Gene3D G3DSA:3.30.450.20 9 148 4.8E-50 T 13-10-2018 RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 Gene3D G3DSA:3.30.750.24 149 261 9.0E-28 T 13-10-2018 IPR036513 STAS domain superfamily RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 Pfam PF13426 PAS domain 26 130 1.2E-21 T 13-10-2018 IPR000014 PAS domain RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 Pfam PF01740 STAS domain 153 256 2.1E-7 T 13-10-2018 IPR002645 STAS domain RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 136 8.6E-21 T 13-10-2018 IPR000014 PAS domain RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 SMART SM00086 89 131 3.2E-11 T 13-10-2018 IPR001610 PAC motif RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 SUPERFAMILY SSF52091 150 260 6.28E-12 T 13-10-2018 IPR036513 STAS domain superfamily RA13_07550 d8b2b2bbfbfcee7da4c822b5968c1b76 263 SMART SM00091 14 83 6.5E-4 T 13-10-2018 IPR000014 PAS domain RA13_15180 6cf5080ea74b957bbc0cf9db0e0fc2ba 128 Pfam PF11068 YlqD protein 1 126 5.0E-36 T 13-10-2018 IPR021297 YlqD protein RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 489 600 2.0E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SMART SM00387 488 602 6.1E-45 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Gene3D G3DSA:1.10.287.130 368 447 8.9E-29 T 13-10-2018 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SUPERFAMILY SSF55874 432 600 3.14E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SUPERFAMILY SSF47384 362 443 2.55E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SMART SM00388 376 443 1.6E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Gene3D G3DSA:3.30.565.10 451 601 5.3E-52 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SMART SM00091 263 329 6.1E-6 T 13-10-2018 IPR000014 PAS domain RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Pfam PF13426 PAS domain 274 369 7.5E-7 T 13-10-2018 IPR000014 PAS domain RA13_02155 957b824d43a77bf0734d1347cc09e621 611 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 541 1.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 555 1.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 580 1.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 599 1.5E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Gene3D G3DSA:3.30.450.20 32 182 4.0E-42 T 13-10-2018 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SMART SM00304 204 256 5.0E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Gene3D G3DSA:3.30.450.20 271 367 2.4E-21 T 13-10-2018 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Pfam PF00512 His Kinase A (phospho-acceptor) domain 377 442 1.3E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Gene3D G3DSA:1.10.8.500 203 255 9.2E-9 T 13-10-2018 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SUPERFAMILY SSF55785 250 368 5.58E-10 T 13-10-2018 IPR035965 PAS domain superfamily RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SUPERFAMILY SSF103190 57 178 1.02E-6 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_02155 957b824d43a77bf0734d1347cc09e621 611 SUPERFAMILY SSF158472 204 253 7.85E-10 T 13-10-2018 RA13_02155 957b824d43a77bf0734d1347cc09e621 611 Pfam PF00672 HAMP domain 204 252 1.5E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_11370 db866937fa04f86779456393a65b1de0 643 SMART SM00491 501 622 1.2E-6 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RA13_11370 db866937fa04f86779456393a65b1de0 643 Gene3D G3DSA:3.40.50.300 37 317 1.7E-29 T 13-10-2018 RA13_11370 db866937fa04f86779456393a65b1de0 643 Gene3D G3DSA:3.40.50.300 461 620 2.3E-25 T 13-10-2018 RA13_11370 db866937fa04f86779456393a65b1de0 643 SUPERFAMILY SSF52540 52 619 1.32E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11370 db866937fa04f86779456393a65b1de0 643 Pfam PF13307 Helicase C-terminal domain 486 618 2.8E-23 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 RA13_02340 ec2d61b547a26078f6896c68735c5668 562 Pfam PF13408 Recombinase zinc beta ribbon domain 318 383 6.0E-10 T 13-10-2018 IPR025827 Recombinase zinc beta ribbon domain RA13_02340 ec2d61b547a26078f6896c68735c5668 562 SUPERFAMILY SSF53041 23 173 3.92E-37 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RA13_02340 ec2d61b547a26078f6896c68735c5668 562 Gene3D G3DSA:3.40.50.1390 20 155 9.8E-45 T 13-10-2018 RA13_02340 ec2d61b547a26078f6896c68735c5668 562 SMART SM00857 24 173 5.3E-60 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_02340 ec2d61b547a26078f6896c68735c5668 562 ProSitePatterns PS00397 Site-specific recombinases active site. 27 35 - T 13-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RA13_02340 ec2d61b547a26078f6896c68735c5668 562 Pfam PF07508 Recombinase 202 304 1.1E-24 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 RA13_02340 ec2d61b547a26078f6896c68735c5668 562 Gene3D G3DSA:1.10.10.2600 158 307 5.5E-31 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily RA13_02340 ec2d61b547a26078f6896c68735c5668 562 Pfam PF00239 Resolvase, N terminal domain 24 172 1.4E-41 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_18370 bedf16593ecd5945b6c9f5797ccbc793 298 Pfam PF00005 ABC transporter 18 157 2.4E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_18370 bedf16593ecd5945b6c9f5797ccbc793 298 Pfam PF13732 Domain of unknown function (DUF4162) 211 293 1.1E-20 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RA13_18370 bedf16593ecd5945b6c9f5797ccbc793 298 SUPERFAMILY SSF52540 2 222 8.57E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18370 bedf16593ecd5945b6c9f5797ccbc793 298 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_18370 bedf16593ecd5945b6c9f5797ccbc793 298 Gene3D G3DSA:3.40.50.300 1 234 4.1E-58 T 13-10-2018 RA13_18370 bedf16593ecd5945b6c9f5797ccbc793 298 SMART SM00382 26 239 1.5E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05430 00739194cfca6bcd621ed61cc0879730 336 SUPERFAMILY SSF51679 10 331 4.0E-86 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_05430 00739194cfca6bcd621ed61cc0879730 336 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 11 331 1.1E-136 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 RA13_05430 00739194cfca6bcd621ed61cc0879730 336 Gene3D G3DSA:3.20.20.30 6 335 2.4E-99 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_05430 00739194cfca6bcd621ed61cc0879730 336 Pfam PF00296 Luciferase-like monooxygenase 27 308 1.2E-38 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RA13_04755 c3d9780279822c73644ab546b0c21010 252 Pfam PF00535 Glycosyl transferase family 2 9 121 2.4E-37 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_04755 c3d9780279822c73644ab546b0c21010 252 Gene3D G3DSA:3.90.550.10 1 251 3.8E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04755 c3d9780279822c73644ab546b0c21010 252 SUPERFAMILY SSF53448 6 226 8.91E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 SUPERFAMILY SSF52317 1 189 6.3E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 Pfam PF00117 Glutamine amidotransferase class-I 4 185 3.5E-55 T 13-10-2018 IPR017926 Glutamine amidotransferase RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.7E-35 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.7E-35 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.7E-35 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00097 Anthranilate synthase component II signature 164 177 1.7E-35 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.7E-35 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.7E-35 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 1.5E-92 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.0E-13 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 4.0E-13 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.0E-13 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 7.4E-7 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 7.4E-7 T 13-10-2018 RA13_01330 364b261a54c3503f5e14cfabfbaa0619 194 Gene3D G3DSA:3.40.50.880 1 190 2.3E-62 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_13770 b61a0e055ba12e959f44a126b1bed0a7 1309 Pfam PF14579 Helix-hairpin-helix motif 919 1004 1.8E-12 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_13770 b61a0e055ba12e959f44a126b1bed0a7 1309 Pfam PF02811 PHP domain 4 209 1.0E-21 T 13-10-2018 IPR004013 PHP domain GO:0003824 RA13_13770 b61a0e055ba12e959f44a126b1bed0a7 1309 Gene3D G3DSA:3.20.20.140 2 305 3.9E-55 T 13-10-2018 RA13_13770 b61a0e055ba12e959f44a126b1bed0a7 1309 SUPERFAMILY SSF89550 4 271 1.18E-20 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RA13_13770 b61a0e055ba12e959f44a126b1bed0a7 1309 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 352 822 7.1E-107 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_13770 b61a0e055ba12e959f44a126b1bed0a7 1309 SMART SM00481 2 80 8.0E-20 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 13-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 Pfam PF00186 Dihydrofolate reductase 1 159 2.4E-65 T 13-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 SUPERFAMILY SSF53597 1 160 1.19E-61 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 PRINTS PR00070 Dihydrofolate reductase signature 13 23 1.3E-15 T 13-10-2018 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 PRINTS PR00070 Dihydrofolate reductase signature 27 35 1.3E-15 T 13-10-2018 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 PRINTS PR00070 Dihydrofolate reductase signature 40 51 1.3E-15 T 13-10-2018 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 PRINTS PR00070 Dihydrofolate reductase signature 91 105 1.3E-15 T 13-10-2018 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 Gene3D G3DSA:3.40.430.10 1 169 1.3E-65 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RA13_11550 aa06f2fd12497d23b68ca4694b1ea516 169 PIRSF PIRSF000194 1 162 1.0E-62 T 13-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.30.70.3290 872 1006 1.1E-247 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 3839 3956 2.2E-37 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 2607 2724 4.7E-40 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 679 796 1.6E-40 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF00550 Phosphopantetheine attachment site 3477 3540 4.6E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF00550 Phosphopantetheine attachment site 313 378 5.3E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF00550 Phosphopantetheine attachment site 2236 2300 3.8E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF00550 Phosphopantetheine attachment site 4207 4271 9.4E-8 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00826 1034 1201 5.9E-23 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF53335 1966 2163 1.67E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM01294 4205 4271 3.7E-4 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM01294 312 378 4.3E-7 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 800 917 1.1E-9 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2728 2839 2.3E-10 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 3960 4067 2.7E-8 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.40.50.720 3038 3440 1.6E-90 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.10.129.110 1 270 1.0E-81 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF51735 1554 1781 4.54E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF47336 3476 3606 4.32E-11 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.30.70.3050 4060 4156 1.2E-221 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.30.70.3050 2838 2936 2.8E-245 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF53901 2362 2777 2.18E-90 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00823 Phosphopantetheine attachment site 3474 3545 1.2E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00823 Phosphopantetheine attachment site 311 382 7.2E-8 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00823 Phosphopantetheine attachment site 4204 4275 0.34 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00823 Phosphopantetheine attachment site 2234 2304 7.0E-10 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF51735 1348 1544 1.07E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.40.50.720 1333 1789 4.6E-77 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF53901 417 786 9.87E-90 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.40.47.10 2366 2947 2.8E-245 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF53901 3589 3945 2.96E-87 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.40.50.150 1864 2171 1.1E-47 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00825 Beta-ketoacyl synthase 3595 4010 5.7E-159 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00825 Beta-ketoacyl synthase 420 858 5.3E-194 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00825 Beta-ketoacyl synthase 2367 2782 1.9E-186 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:1.10.1200.10 4187 4280 1.0E-14 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF08659 KR domain 1558 1736 7.0E-38 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF08659 KR domain 3203 3383 2.3E-47 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3203 3384 6.4E-37 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1558 1738 1.8E-25 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.40.47.10 420 1018 1.1E-247 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14575 369d14922e8b97326f83171a5d154248 4323 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 3749 3767 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF47336 308 431 2.09E-16 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF51735 3201 3424 6.76E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 419 671 4.8E-89 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2365 2599 2.0E-82 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3593 3831 7.0E-85 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF47336 2234 2304 1.96E-11 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF08242 Methyltransferase domain 2003 2107 1.2E-14 T 13-10-2018 IPR013217 Methyltransferase type 12 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF14765 Polyketide synthase dehydratase 1034 1325 1.7E-64 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Pfam PF14765 Polyketide synthase dehydratase 12 274 1.2E-21 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.10.129.110 1040 1332 5.6E-87 T 13-10-2018 RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:1.10.1200.10 2220 2306 5.4E-16 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 3744 3760 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:3.40.47.10 3594 4167 1.2E-221 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14575 369d14922e8b97326f83171a5d154248 4323 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 2512 2528 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:1.10.1200.10 3462 3543 4.7E-11 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 Gene3D G3DSA:1.10.1200.10 295 383 8.2E-18 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14575 369d14922e8b97326f83171a5d154248 4323 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2260 2275 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_14575 369d14922e8b97326f83171a5d154248 4323 SUPERFAMILY SSF47336 4201 4283 1.31E-10 T 13-10-2018 IPR036736 ACP-like superfamily RA13_11255 decad71299be6d7e82967e2322d115c5 430 Pfam PF00152 tRNA synthetases class II (D, K and N) 111 424 8.4E-85 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_11255 decad71299be6d7e82967e2322d115c5 430 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 2 429 2.9E-174 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 RA13_11255 decad71299be6d7e82967e2322d115c5 430 Gene3D G3DSA:2.40.50.140 2 101 3.3E-25 T 13-10-2018 RA13_11255 decad71299be6d7e82967e2322d115c5 430 Gene3D G3DSA:3.30.930.10 102 430 1.3E-118 T 13-10-2018 RA13_11255 decad71299be6d7e82967e2322d115c5 430 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 1 430 42.284 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 RA13_11255 decad71299be6d7e82967e2322d115c5 430 SUPERFAMILY SSF50249 9 102 8.95E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_11255 decad71299be6d7e82967e2322d115c5 430 Pfam PF01336 OB-fold nucleic acid binding domain 16 95 1.5E-15 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RA13_11255 decad71299be6d7e82967e2322d115c5 430 SUPERFAMILY SSF55681 110 424 9.54E-98 T 13-10-2018 RA13_11255 decad71299be6d7e82967e2322d115c5 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 180 192 3.1E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_11255 decad71299be6d7e82967e2322d115c5 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 385 399 3.1E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_11255 decad71299be6d7e82967e2322d115c5 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 209 3.1E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_11255 decad71299be6d7e82967e2322d115c5 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 345 361 3.1E-15 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_16800 d09247fd92ca82c582e66f37c257ccc9 308 SUPERFAMILY SSF161098 88 286 2.13E-20 T 13-10-2018 IPR035906 MetI-like superfamily RA13_16800 d09247fd92ca82c582e66f37c257ccc9 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 3.4E-39 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_16800 d09247fd92ca82c582e66f37c257ccc9 308 Gene3D G3DSA:1.10.3720.10 83 299 3.3E-22 T 13-10-2018 IPR035906 MetI-like superfamily RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 Gene3D G3DSA:3.40.50.300 1 241 7.1E-60 T 13-10-2018 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 Gene3D G3DSA:3.40.50.300 905 1186 1.9E-55 T 13-10-2018 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 SUPERFAMILY SSF57997 669 862 1.83E-5 T 13-10-2018 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 Pfam PF06470 SMC proteins Flexible Hinge Domain 518 637 4.0E-30 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1178 0.0 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 SUPERFAMILY SSF52540 1 1163 2.05E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1180 24.891 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 SMART SM00968 518 637 8.7E-40 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 Gene3D G3DSA:1.20.1060.20 495 679 9.3E-67 T 13-10-2018 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1171 5.5E-64 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 Gene3D G3DSA:3.30.70.1620 578 667 9.3E-67 T 13-10-2018 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 SUPERFAMILY SSF75553 484 686 3.01E-55 T 13-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 RA13_15210 2f4cd10ee649520e6398c653cb4e25f8 1186 PIRSF PIRSF005719 1 1186 0.0 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein RA13_16930 d766e7576326288a6c811bb63c92512f 325 SUPERFAMILY SSF69279 19 150 7.65E-12 T 13-10-2018 RA13_09735 e867983f3ac0febf6d33a7972d9c1e64 235 Gene3D G3DSA:3.40.50.150 1 161 3.9E-56 T 13-10-2018 RA13_09735 e867983f3ac0febf6d33a7972d9c1e64 235 Pfam PF04816 tRNA (adenine(22)-N(1))-methyltransferase 20 230 2.4E-77 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 RA13_09735 e867983f3ac0febf6d33a7972d9c1e64 235 PIRSF PIRSF018637 1 235 9.9E-91 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 RA13_09735 e867983f3ac0febf6d33a7972d9c1e64 235 SUPERFAMILY SSF53335 7 139 5.88E-10 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 2 306 2.7E-85 T 13-10-2018 IPR014146 DNA ligase D, ligase domain RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 321 560 6.2E-85 T 13-10-2018 IPR014145 DNA ligase D, polymerase domain RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 Gene3D G3DSA:3.30.470.30 3 204 1.8E-37 T 13-10-2018 RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 SUPERFAMILY SSF56091 8 204 3.12E-37 T 13-10-2018 RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 9 588 5.1E-200 T 13-10-2018 IPR014143 DNA ligase D RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 18 26 - T 13-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 Gene3D G3DSA:3.90.920.30 327 604 9.8E-79 T 13-10-2018 RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 Pfam PF01068 ATP dependent DNA ligase domain 12 204 9.2E-35 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RA13_16525 23c459b8e649eed521315f6df4b1fde7 607 ProSitePatterns PS00333 ATP-dependent DNA ligase signature 2. 180 204 - T 13-10-2018 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 RA13_11695 91f53ce91e3dfb117bc39a204178e8b9 287 Pfam PF12996 DUF based on E. rectale Gene description (DUF3880) 51 123 2.7E-14 T 13-10-2018 IPR024542 Domain of unknown function DUF3880 RA13_11695 91f53ce91e3dfb117bc39a204178e8b9 287 Pfam PF13524 Glycosyl transferases group 1 183 267 9.0E-8 T 13-10-2018 RA13_11695 91f53ce91e3dfb117bc39a204178e8b9 287 SUPERFAMILY SSF53756 12 188 2.9E-6 T 13-10-2018 RA13_05050 46b28994344f9df735e0e5d9abb73503 213 Gene3D G3DSA:3.40.190.10 6 199 1.6E-80 T 13-10-2018 RA13_05050 46b28994344f9df735e0e5d9abb73503 213 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 5 184 3.1E-62 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RA13_05050 46b28994344f9df735e0e5d9abb73503 213 SUPERFAMILY SSF53850 3 206 7.6E-65 T 13-10-2018 RA13_05050 46b28994344f9df735e0e5d9abb73503 213 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 143 164 - T 13-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 RA13_05050 46b28994344f9df735e0e5d9abb73503 213 Pfam PF01634 ATP phosphoribosyltransferase 54 203 1.2E-49 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RA13_05050 46b28994344f9df735e0e5d9abb73503 213 Gene3D G3DSA:3.40.190.10 95 176 1.6E-80 T 13-10-2018 RA13_05050 46b28994344f9df735e0e5d9abb73503 213 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 4 208 56.904 T 13-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 2 588 7.1E-272 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 123 560 5.2E-110 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 Pfam PF02938 GAD domain 314 408 6.5E-33 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 3 587 34.653 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 Pfam PF01336 OB-fold nucleic acid binding domain 20 104 1.7E-16 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 Gene3D G3DSA:3.30.1360.30 278 422 7.5E-196 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 521 535 1.0E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 477 493 1.0E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 208 1.0E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 213 226 1.0E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 Gene3D G3DSA:3.30.930.10 122 584 7.5E-196 T 13-10-2018 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 SUPERFAMILY SSF55261 295 422 4.25E-43 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 SUPERFAMILY SSF55681 118 586 2.67E-107 T 13-10-2018 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 Gene3D G3DSA:2.40.50.140 1 109 4.3E-34 T 13-10-2018 RA13_09010 0b0a2d69f230ec33687cba5db839f4c7 592 SUPERFAMILY SSF50249 4 108 5.52E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_01970 40d272da6f122d2706464420e92ad1ce 103 Pfam PF09685 Domain of unknown function (DUF4870) 5 98 2.7E-7 T 13-10-2018 IPR019109 Protein of unknown function DUF4870 RA13_01970 40d272da6f122d2706464420e92ad1ce 103 ProDom PD070949 MEMBRANE PROTEIN YVLA SPANNING SIMILAR SE2241 LMO0604 LMO2177 LIN2280 INTEGRAL 1 100 5.0E-23 T 13-10-2018 RA13_16775 e72cf39a5cd5a13736f9ac3b5ad1d440 366 SUPERFAMILY SSF51604 112 354 1.57E-68 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_16775 e72cf39a5cd5a13736f9ac3b5ad1d440 366 Pfam PF13378 Enolase C-terminal domain-like 144 354 2.3E-53 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RA13_16775 e72cf39a5cd5a13736f9ac3b5ad1d440 366 SUPERFAMILY SSF54826 1 125 8.2E-33 T 13-10-2018 RA13_16775 e72cf39a5cd5a13736f9ac3b5ad1d440 366 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 11 124 7.8E-20 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RA13_16775 e72cf39a5cd5a13736f9ac3b5ad1d440 366 Gene3D G3DSA:3.20.20.120 116 353 1.5E-119 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_16775 e72cf39a5cd5a13736f9ac3b5ad1d440 366 SMART SM00922 141 240 2.5E-28 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RA13_16775 e72cf39a5cd5a13736f9ac3b5ad1d440 366 Gene3D G3DSA:3.30.390.10 6 115 1.5E-119 T 13-10-2018 IPR029017 Enolase-like, N-terminal RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 SUPERFAMILY SSF52540 3 197 9.23E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 Gene3D G3DSA:3.40.50.300 2 211 2.0E-66 T 13-10-2018 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 TIGRFAM TIGR00235 udk: uridine kinase 4 206 1.6E-95 T 13-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 192 1.7E-42 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 Hamap MF_00551 Uridine kinase [udk]. 2 206 42.352 T 13-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 PRINTS PR00988 Uridine kinase signature 35 46 2.1E-37 T 13-10-2018 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 PRINTS PR00988 Uridine kinase signature 136 146 2.1E-37 T 13-10-2018 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 PRINTS PR00988 Uridine kinase signature 150 161 2.1E-37 T 13-10-2018 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 PRINTS PR00988 Uridine kinase signature 5 22 2.1E-37 T 13-10-2018 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 PRINTS PR00988 Uridine kinase signature 172 185 2.1E-37 T 13-10-2018 RA13_09135 9e03b2488cc18f3ebfe8a11937c74ba0 211 PRINTS PR00988 Uridine kinase signature 80 95 2.1E-37 T 13-10-2018 RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 Gene3D G3DSA:3.40.50.300 238 489 1.1E-43 T 13-10-2018 RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 SMART SM00382 27 224 3.7E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 SMART SM00382 276 470 9.2E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 ProSitePatterns PS00211 ABC transporters family signature. 394 408 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 Gene3D G3DSA:3.40.50.300 1 237 4.7E-61 T 13-10-2018 RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 SUPERFAMILY SSF52540 256 478 2.08E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 Pfam PF00005 ABC transporter 18 168 1.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 SUPERFAMILY SSF52540 3 225 3.34E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_04550 c2350ecd86662ea68150f74a97d987fe 493 Pfam PF00005 ABC transporter 268 421 3.2E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_11100 f20e8304cdb8c6f8dea04a14f6edd195 218 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 4 213 31.07 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RA13_11100 f20e8304cdb8c6f8dea04a14f6edd195 218 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 7 207 1.6E-48 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RA13_11100 f20e8304cdb8c6f8dea04a14f6edd195 218 SUPERFAMILY SSF51366 6 208 3.14E-40 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_11100 f20e8304cdb8c6f8dea04a14f6edd195 218 Gene3D G3DSA:3.20.20.70 5 206 1.0E-49 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 Gene3D G3DSA:3.30.390.30 339 459 2.5E-37 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 274 1.4E-37 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 1.4E-37 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 1.4E-37 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 1.4E-37 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 1.4E-37 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 34 49 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 273 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 5.7E-64 T 13-10-2018 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 Gene3D G3DSA:3.50.50.60 149 268 1.9E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 Gene3D G3DSA:3.50.50.60 3 326 1.9E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 458 4.6E-166 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 321 7.7E-68 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 35 45 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 SUPERFAMILY SSF51905 3 330 9.26E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 PIRSF PIRSF000350 1 452 1.7E-88 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 SUPERFAMILY SSF55424 336 458 2.75E-34 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RA13_19370 83f65fbf38b506a501690c843c8c2a99 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 448 3.2E-34 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RA13_19745 0424091be096885f1a8d11604649a948 254 Pfam PF00483 Nucleotidyl transferase 2 243 5.1E-18 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RA13_19745 0424091be096885f1a8d11604649a948 254 Gene3D G3DSA:3.90.550.10 1 254 4.8E-67 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19745 0424091be096885f1a8d11604649a948 254 SUPERFAMILY SSF53448 1 254 2.25E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_10275 bf906d3e8a9586ddeb6093c0e6bac2a7 301 ProSitePatterns PS00161 Isocitrate lyase signature. 127 132 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 RA13_10275 bf906d3e8a9586ddeb6093c0e6bac2a7 301 Gene3D G3DSA:3.20.20.60 1 301 1.3E-112 T 13-10-2018 RA13_10275 bf906d3e8a9586ddeb6093c0e6bac2a7 301 SUPERFAMILY SSF51621 9 294 9.87E-100 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RA13_10275 bf906d3e8a9586ddeb6093c0e6bac2a7 301 Pfam PF13714 Phosphoenolpyruvate phosphomutase 18 258 1.1E-54 T 13-10-2018 RA13_10275 bf906d3e8a9586ddeb6093c0e6bac2a7 301 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 16 295 1.8E-130 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 RA13_10275 bf906d3e8a9586ddeb6093c0e6bac2a7 301 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 12 296 47.201 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 Pfam PF08245 Mur ligase middle domain 118 292 1.8E-29 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 Gene3D G3DSA:3.40.1190.10 103 309 6.3E-61 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 367 6.3E-8 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 SUPERFAMILY SSF53623 104 309 3.36E-51 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 Gene3D G3DSA:3.40.50.720 10 96 4.6E-27 T 13-10-2018 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 SUPERFAMILY SSF51984 10 101 1.15E-15 T 13-10-2018 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 SUPERFAMILY SSF53244 311 450 2.9E-41 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 Gene3D G3DSA:3.90.190.20 316 449 9.8E-41 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 450 35.728 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_15585 5ff7f94f2c8b565d95ef41c6cc3fe308 451 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 448 4.7E-150 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 SMART SM00919 274 535 2.3E-125 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 SUPERFAMILY SSF53223 4 273 4.75E-104 T 13-10-2018 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 Gene3D G3DSA:3.40.50.10380 16 271 1.7E-105 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 Pfam PF03949 Malic enzyme, NAD binding domain 274 535 9.8E-105 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 Gene3D G3DSA:3.40.50.720 272 566 1.6E-107 T 13-10-2018 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 SMART SM01274 82 264 2.0E-97 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PIRSF PIRSF000106 2 566 1.1E-221 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PRINTS PR00072 Malic enzyme signature 150 179 4.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PRINTS PR00072 Malic enzyme signature 270 286 4.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PRINTS PR00072 Malic enzyme signature 88 112 4.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PRINTS PR00072 Malic enzyme signature 301 317 4.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PRINTS PR00072 Malic enzyme signature 186 208 4.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PRINTS PR00072 Malic enzyme signature 413 429 4.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 PRINTS PR00072 Malic enzyme signature 245 263 4.6E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 Pfam PF00390 Malic enzyme, N-terminal domain 82 264 4.8E-73 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 ProSitePatterns PS00331 Malic enzymes signature. 270 286 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RA13_07740 4dccb621de3ae8570f4c528dee5eb9e4 566 SUPERFAMILY SSF51735 274 564 1.27E-92 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 SMART SM00926 19 75 3.1E-6 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 SUPERFAMILY SSF50692 568 707 1.76E-34 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 Gene3D G3DSA:3.40.228.10 156 355 2.5E-162 T 13-10-2018 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 19 73 1.5E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 Pfam PF01568 Molydopterin dinucleotide binding domain 597 704 1.4E-27 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 Gene3D G3DSA:3.40.50.740 83 552 2.5E-162 T 13-10-2018 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 Gene3D G3DSA:2.20.25.90 20 74 4.5E-7 T 13-10-2018 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 Gene3D G3DSA:2.40.40.20 594 709 4.2E-35 T 13-10-2018 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 SUPERFAMILY SSF53706 19 578 6.41E-172 T 13-10-2018 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 449 466 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 Pfam PF00384 Molybdopterin oxidoreductase 78 503 1.3E-95 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_21800 adfe1e4d6d8a119dd40f82d843dff731 710 PIRSF PIRSF000144 65 618 8.1E-41 T 13-10-2018 RA13_16755 402cf369d0771f37307f776a0ac4d5d3 286 Pfam PF02274 Amidinotransferase 26 284 2.0E-50 T 13-10-2018 RA13_16755 402cf369d0771f37307f776a0ac4d5d3 286 Gene3D G3DSA:3.75.10.10 8 286 2.3E-78 T 13-10-2018 RA13_16755 402cf369d0771f37307f776a0ac4d5d3 286 SUPERFAMILY SSF55909 12 285 5.53E-76 T 13-10-2018 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 SUPERFAMILY SSF51569 3 286 1.15E-101 T 13-10-2018 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 SMART SM01130 2 289 2.6E-135 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 8.6E-37 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 8.6E-37 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 8.6E-37 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 8.6E-37 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 2 288 63.89 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 Gene3D G3DSA:3.20.20.70 1 289 6.2E-113 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 Pfam PF00701 Dihydrodipicolinate synthetase family 3 288 9.2E-123 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 288 2.1E-120 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_14785 f7c1cdd6963155f3c3ccbba50c39e298 289 PIRSF PIRSF001365 1 289 2.3E-96 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_04110 e49f0c24bfafc8a71b7e77af48766db5 262 Pfam PF02634 FdhD/NarQ family 27 260 3.1E-80 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RA13_04110 e49f0c24bfafc8a71b7e77af48766db5 262 PIRSF PIRSF015626 2 262 3.7E-80 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RA13_04110 e49f0c24bfafc8a71b7e77af48766db5 262 Gene3D G3DSA:3.10.20.10 29 111 5.2E-13 T 13-10-2018 RA13_04110 e49f0c24bfafc8a71b7e77af48766db5 262 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 3 261 32.258 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RA13_04110 e49f0c24bfafc8a71b7e77af48766db5 262 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 23 260 7.2E-94 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RA13_04110 e49f0c24bfafc8a71b7e77af48766db5 262 Gene3D G3DSA:3.40.140.10 115 262 3.6E-50 T 13-10-2018 RA13_04110 e49f0c24bfafc8a71b7e77af48766db5 262 SUPERFAMILY SSF53927 6 260 1.53E-78 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 15 283 3.0E-136 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 Pfam PF01039 Carboxyl transferase domain 62 242 3.6E-20 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 SUPERFAMILY SSF52096 28 281 1.49E-79 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 3 281 38.366 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 Gene3D G3DSA:3.90.226.10 28 282 8.3E-88 T 13-10-2018 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 9.3E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 9.3E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 9.3E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 9.3E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08090 90d65ba954a3e8e842731258036e2bdb 290 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 9.3E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_04395 948691c46cefb0f5fd254c92bb1965b2 86 ProDom PD061728 YWQI YWQIA COIL COILED 1 86 5.0E-38 T 13-10-2018 IPR020299 Uncharacterised protein family YwqI RA13_04395 948691c46cefb0f5fd254c92bb1965b2 86 Pfam PF17279 Family of unknown function (DUF5344) 1 84 3.2E-24 T 13-10-2018 RA13_18165 3278b0641407af4c2f41d92c33e61993 430 Pfam PF01435 Peptidase family M48 207 414 1.8E-39 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RA13_18165 3278b0641407af4c2f41d92c33e61993 430 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 45 203 6.0E-17 T 13-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 RA13_18165 3278b0641407af4c2f41d92c33e61993 430 Gene3D G3DSA:3.30.2010.10 203 285 2.6E-26 T 13-10-2018 RA13_11560 b55052d781cc35c491df82ac2644db10 212 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 6 206 9.3E-71 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 RA13_11560 b55052d781cc35c491df82ac2644db10 212 Pfam PF03006 Haemolysin-III related 2 198 1.2E-38 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RA13_16680 168b6529435a45aaf6065131c380c208 137 SUPERFAMILY SSF82784 4 136 4.19E-40 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RA13_16680 168b6529435a45aaf6065131c380c208 137 Gene3D G3DSA:3.30.300.20 44 137 1.1E-34 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_16680 168b6529435a45aaf6065131c380c208 137 Pfam PF02566 OsmC-like protein 40 134 1.8E-19 T 13-10-2018 IPR003718 OsmC/Ohr family RA13_16680 168b6529435a45aaf6065131c380c208 137 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 135 8.3E-53 T 13-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 RA13_16680 168b6529435a45aaf6065131c380c208 137 Gene3D G3DSA:2.20.25.10 3 43 2.8E-22 T 13-10-2018 RA13_18045 06999bc9e7bd92f438c31cb7fae4c419 207 Pfam PF09335 SNARE associated Golgi protein 43 160 1.0E-21 T 13-10-2018 IPR032816 SNARE associated Golgi protein RA13_16955 4c1eaf1353f2b7766388f9265f520090 147 SUPERFAMILY SSF69279 6 142 2.38E-49 T 13-10-2018 RA13_16955 4c1eaf1353f2b7766388f9265f520090 147 Gene3D G3DSA:2.30.110.40 1 142 1.1E-61 T 13-10-2018 IPR038628 XkdM-like superfamily RA13_16955 4c1eaf1353f2b7766388f9265f520090 147 Pfam PF09393 Phage tail tube protein 2 141 3.4E-54 T 13-10-2018 IPR018989 Phage tail tube protein RA13_17720 8419d0813510e523ad7c3c1531272d83 345 Gene3D G3DSA:3.30.360.10 147 313 5.5E-128 T 13-10-2018 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 SMART SM00859 2 141 3.3E-51 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 345 1.0E-141 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 SUPERFAMILY SSF55347 149 313 7.77E-57 T 13-10-2018 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 316 3.3E-32 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 Gene3D G3DSA:3.40.50.720 2 331 5.5E-128 T 13-10-2018 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 1 339 43.933 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 141 4.9E-35 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RA13_17720 8419d0813510e523ad7c3c1531272d83 345 SUPERFAMILY SSF51735 2 176 2.59E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 SUPERFAMILY SSF48179 160 268 1.6E-31 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 2 265 25.564 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 SUPERFAMILY SSF51735 2 156 2.3E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 161 264 8.5E-33 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 98 6.4E-22 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 Gene3D G3DSA:1.10.3730.10 163 270 1.5E-36 T 13-10-2018 RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 Gene3D G3DSA:3.40.50.720 1 162 1.3E-47 T 13-10-2018 RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 PIRSF PIRSF000193 1 268 1.2E-76 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 4 264 3.6E-81 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_10435 fdd1b5b7a08ecd2713a0d9057dad2430 277 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 221 243 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 5 283 8.2E-100 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 Pfam PF01678 Diaminopimelate epimerase 6 130 6.2E-34 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 Pfam PF01678 Diaminopimelate epimerase 161 276 6.1E-35 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 Gene3D G3DSA:3.10.310.10 126 274 1.7E-111 T 13-10-2018 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 SUPERFAMILY SSF54506 3 280 1.1E-49 T 13-10-2018 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 67 81 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 4 284 37.909 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RA13_06410 80c76ebed4dcb20fc3e648f80b3029fa 284 Gene3D G3DSA:3.10.310.10 6 280 1.7E-111 T 13-10-2018 RA13_20810 e9d06dee6571e8ff4b9bc86e512b31b6 436 Pfam PF07690 Major Facilitator Superfamily 260 432 1.7E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_20810 e9d06dee6571e8ff4b9bc86e512b31b6 436 Pfam PF00083 Sugar (and other) transporter 68 218 2.9E-5 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RA13_20810 e9d06dee6571e8ff4b9bc86e512b31b6 436 SUPERFAMILY SSF103473 29 432 1.19E-46 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_20810 e9d06dee6571e8ff4b9bc86e512b31b6 436 Gene3D G3DSA:1.20.1250.20 29 428 3.7E-40 T 13-10-2018 RA13_05615 d5d1fa6ae982749374a9945139a0a7ac 62 Pfam PF01381 Helix-turn-helix 4 50 1.1E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_05615 d5d1fa6ae982749374a9945139a0a7ac 62 SUPERFAMILY SSF47413 3 56 1.34E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_05615 d5d1fa6ae982749374a9945139a0a7ac 62 SMART SM00530 1 51 0.0012 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_05615 d5d1fa6ae982749374a9945139a0a7ac 62 Gene3D G3DSA:1.10.260.40 1 54 3.7E-8 T 13-10-2018 RA13_20765 696da624718ad4ad7464c5652cf0f812 296 SUPERFAMILY SSF103481 181 279 3.53E-11 T 13-10-2018 RA13_20765 696da624718ad4ad7464c5652cf0f812 296 SUPERFAMILY SSF103481 38 137 1.57E-14 T 13-10-2018 RA13_20765 696da624718ad4ad7464c5652cf0f812 296 Pfam PF00892 EamA-like transporter family 7 134 3.0E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_20765 696da624718ad4ad7464c5652cf0f812 296 Pfam PF00892 EamA-like transporter family 147 279 4.6E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_10185 88169e41745febf546106d5572e6de16 84 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 11 71 14.514 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RA13_10185 88169e41745febf546106d5572e6de16 84 SUPERFAMILY SSF116842 5 74 2.48E-21 T 13-10-2018 RA13_10185 88169e41745febf546106d5572e6de16 84 Gene3D G3DSA:1.10.287.1040 5 82 9.3E-23 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 RA13_10185 88169e41745febf546106d5572e6de16 84 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 11 66 1.7E-22 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RA13_10185 88169e41745febf546106d5572e6de16 84 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 11 50 8.0E-15 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RA13_10185 88169e41745febf546106d5572e6de16 84 Pfam PF02609 Exonuclease VII small subunit 12 61 6.2E-21 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RA13_12795 f29c9b756b5776c56e5fadab684c1d28 216 Pfam PF00239 Resolvase, N terminal domain 3 147 6.5E-27 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_12795 f29c9b756b5776c56e5fadab684c1d28 216 SUPERFAMILY SSF53041 1 148 6.15E-27 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RA13_12795 f29c9b756b5776c56e5fadab684c1d28 216 SMART SM00857 3 149 4.4E-35 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_12795 f29c9b756b5776c56e5fadab684c1d28 216 Gene3D G3DSA:3.40.50.1390 1 158 1.5E-28 T 13-10-2018 RA13_03600 46374dd0c6ac1af90d5d3db945e24699 316 Gene3D G3DSA:3.40.50.720 5 306 5.9E-123 T 13-10-2018 RA13_03600 46374dd0c6ac1af90d5d3db945e24699 316 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 307 5.7E-82 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_03600 46374dd0c6ac1af90d5d3db945e24699 316 SUPERFAMILY SSF51735 2 315 9.54E-93 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_03600 46374dd0c6ac1af90d5d3db945e24699 316 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 5 314 7.1E-148 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RA13_03600 46374dd0c6ac1af90d5d3db945e24699 316 Gene3D G3DSA:3.90.25.10 193 314 5.9E-123 T 13-10-2018 RA13_04615 3955cc6d230e55535175a072ca4186e9 322 Gene3D G3DSA:1.10.260.190 45 244 3.9E-61 T 13-10-2018 RA13_04615 3955cc6d230e55535175a072ca4186e9 322 Gene3D G3DSA:1.10.260.190 245 322 3.6E-18 T 13-10-2018 RA13_04615 3955cc6d230e55535175a072ca4186e9 322 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 94 243 4.6E-40 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RA13_04615 3955cc6d230e55535175a072ca4186e9 322 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 95 243 1.3E-42 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RA13_07235 deb16a384f64c57ecdd3090ba67a9be5 343 Gene3D G3DSA:2.160.10.10 233 337 6.4E-27 T 13-10-2018 RA13_07235 deb16a384f64c57ecdd3090ba67a9be5 343 SUPERFAMILY SSF53448 26 302 6.37E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_07235 deb16a384f64c57ecdd3090ba67a9be5 343 Pfam PF00483 Nucleotidyl transferase 19 148 5.8E-7 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RA13_07235 deb16a384f64c57ecdd3090ba67a9be5 343 Gene3D G3DSA:3.90.550.10 5 157 2.2E-18 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_07235 deb16a384f64c57ecdd3090ba67a9be5 343 TIGRFAM TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit 156 336 1.2E-74 T 13-10-2018 IPR011832 Glucose-1-phosphate adenylyltransferase, GlgD subunit GO:0005978 RA13_07235 deb16a384f64c57ecdd3090ba67a9be5 343 SUPERFAMILY SSF51161 247 319 4.57E-11 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 SUPERFAMILY SSF52777 173 399 2.31E-78 T 13-10-2018 RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 SUPERFAMILY SSF51230 1 95 3.8E-24 T 13-10-2018 IPR011053 Single hybrid motif RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 Pfam PF00364 Biotin-requiring enzyme 4 76 8.5E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 171 399 3.2E-81 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 Pfam PF02817 e3 binding domain 118 153 1.3E-13 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 Gene3D G3DSA:3.30.559.10 172 400 1.3E-82 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 Gene3D G3DSA:4.10.320.10 110 171 1.8E-18 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 SUPERFAMILY SSF47005 114 156 3.79E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_19375 34efaaf34b1db9c83733dde6fc24d8b3 400 Gene3D G3DSA:2.40.50.100 2 101 6.2E-26 T 13-10-2018 RA13_18085 669276efc6531586b7cf1254a6781d12 510 Pfam PF01266 FAD dependent oxidoreductase 35 379 3.9E-44 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RA13_18085 669276efc6531586b7cf1254a6781d12 510 Gene3D G3DSA:3.30.9.10 128 339 1.6E-44 T 13-10-2018 RA13_18085 669276efc6531586b7cf1254a6781d12 510 Pfam PF00355 Rieske [2Fe-2S] domain 428 507 2.1E-13 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RA13_18085 669276efc6531586b7cf1254a6781d12 510 Gene3D G3DSA:3.50.50.60 35 381 1.6E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18085 669276efc6531586b7cf1254a6781d12 510 SUPERFAMILY SSF50022 428 507 1.31E-24 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RA13_18085 669276efc6531586b7cf1254a6781d12 510 PRINTS PR00162 Rieske 2Fe-2S subunit signature 492 504 1.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RA13_18085 669276efc6531586b7cf1254a6781d12 510 PRINTS PR00162 Rieske 2Fe-2S subunit signature 480 492 1.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RA13_18085 669276efc6531586b7cf1254a6781d12 510 PRINTS PR00162 Rieske 2Fe-2S subunit signature 459 470 1.2E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 RA13_18085 669276efc6531586b7cf1254a6781d12 510 SUPERFAMILY SSF51905 32 386 4.4E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18085 669276efc6531586b7cf1254a6781d12 510 Gene3D G3DSA:2.102.10.10 408 510 4.1E-26 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 6 383 5.6E-190 T 13-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 1 384 51.823 T 13-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 Gene3D G3DSA:3.30.470.20 189 384 3.7E-59 T 13-10-2018 RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 SUPERFAMILY SSF56059 105 307 1.94E-57 T 13-10-2018 RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 Gene3D G3DSA:3.30.1490.20 115 188 2.0E-30 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 SUPERFAMILY SSF51246 313 383 1.26E-13 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 SUPERFAMILY SSF52440 4 104 5.18E-31 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 Pfam PF02222 ATP-grasp domain 115 286 2.0E-59 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RA13_00400 8e7ce2c8aa2dab2741fcb7a5d84d5b18 384 Gene3D G3DSA:3.40.50.20 1 114 7.2E-50 T 13-10-2018 RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 SUPERFAMILY SSF46785 5 64 2.01E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.0E-10 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.0E-10 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 SUPERFAMILY SSF100950 74 234 9.31E-37 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 SMART SM01134 73 233 5.1E-72 T 13-10-2018 RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 Pfam PF00455 DeoR C terminal sensor domain 75 232 1.8E-54 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 Gene3D G3DSA:1.10.10.10 1 74 3.2E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 62 7.5E-18 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_06905 f9281ea743233a51ed6d0cc1f228a72d 256 SMART SM00420 6 58 3.1E-23 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 Gene3D G3DSA:3.10.20.580 449 555 4.6E-37 T 13-10-2018 RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 Pfam PF00753 Metallo-beta-lactamase superfamily 20 167 3.9E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 SUPERFAMILY SSF56281 10 424 6.98E-80 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 SMART SM00849 21 216 3.6E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 Gene3D G3DSA:3.40.50.10710 208 358 9.8E-167 T 13-10-2018 RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 Gene3D G3DSA:3.60.15.10 12 442 9.8E-167 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 Hamap MF_01491 Ribonuclease J [rnj]. 4 555 45.192 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 PIRSF PIRSF004803 1 555 1.3E-228 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 9 553 6.3E-225 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RA13_14780 1653aecfd47cb3d27746ff0a761f6e17 555 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 362 407 7.1E-9 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RA13_09645 b81f8c47a27811da9a8c26a521d35829 93 TIGRFAM TIGR02856 spore_yqfC: sporulation protein YqfC 8 91 1.0E-36 T 13-10-2018 IPR022477 Sporulation protein YqfC RA13_09645 b81f8c47a27811da9a8c26a521d35829 93 Pfam PF07873 YabP family 27 90 7.6E-18 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC RA13_07785 251b86908fa7214124c09204f94ae6e7 140 Pfam PF06103 Bacterial protein of unknown function (DUF948) 8 94 3.0E-27 T 13-10-2018 IPR009293 Uncharacterised protein family UPF0478 RA13_07785 251b86908fa7214124c09204f94ae6e7 140 SUPERFAMILY SSF58104 25 129 6.28E-5 T 13-10-2018 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 502 639 5.0E-32 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 SUPERFAMILY SSF63520 174 281 1.7E-19 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 SUPERFAMILY SSF63520 298 402 5.36E-23 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Pfam PF08279 HTH domain 5 63 6.1E-13 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 SUPERFAMILY SSF52794 409 490 1.41E-6 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Gene3D G3DSA:3.40.930.10 500 640 5.6E-30 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Pfam PF05043 Mga helix-turn-helix domain 71 166 1.6E-18 T 13-10-2018 IPR007737 Mga helix-turn-helix domain RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 SUPERFAMILY SSF46785 2 64 7.39E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Gene3D G3DSA:1.10.1790.10 299 400 6.5E-24 T 13-10-2018 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Gene3D G3DSA:1.10.1790.10 184 284 1.4E-14 T 13-10-2018 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Gene3D G3DSA:3.40.50.2300 409 495 1.3E-9 T 13-10-2018 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 SUPERFAMILY SSF55804 501 639 1.05E-31 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Gene3D G3DSA:1.10.10.10 3 152 1.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Pfam PF00874 PRD domain 203 281 5.9E-16 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_03190 2cd70372b1b16c81333581ed354c5c3b 643 Pfam PF00874 PRD domain 310 398 1.4E-21 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_02600 122a1633560091eb97351802e5ff8b1d 289 Gene3D G3DSA:3.20.20.150 1 285 7.1E-46 T 13-10-2018 RA13_02600 122a1633560091eb97351802e5ff8b1d 289 Pfam PF01261 Xylose isomerase-like TIM barrel 23 241 3.5E-38 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RA13_02600 122a1633560091eb97351802e5ff8b1d 289 SUPERFAMILY SSF51658 2 286 6.42E-54 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_14820 b5d429ef02d5dccea6a3c4456c43d50d 319 TIGRFAM TIGR02873 spore_ylxY: probable sporulation protein, polysaccharide deacetylase family 46 313 2.3E-145 T 13-10-2018 IPR014228 Sporulation protein, polysaccharide deacetylase, YlxY RA13_14820 b5d429ef02d5dccea6a3c4456c43d50d 319 SUPERFAMILY SSF88713 114 313 7.08E-59 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_14820 b5d429ef02d5dccea6a3c4456c43d50d 319 Gene3D G3DSA:3.20.20.370 81 316 2.9E-60 T 13-10-2018 RA13_14820 b5d429ef02d5dccea6a3c4456c43d50d 319 Pfam PF01522 Polysaccharide deacetylase 128 245 7.6E-29 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 Pfam PF13396 Phospholipase_D-nuclease N-terminal 13 55 9.3E-13 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 Hamap MF_01916 Cardiolipin synthase. 8 482 46.847 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 SUPERFAMILY SSF56024 80 312 2.36E-57 T 13-10-2018 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 Gene3D G3DSA:3.30.870.10 305 451 9.3E-27 T 13-10-2018 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 SUPERFAMILY SSF56024 269 469 1.73E-51 T 13-10-2018 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 SMART SM00155 395 422 2.0E-6 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 SMART SM00155 217 244 1.6E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 Pfam PF13091 PLD-like domain 135 277 3.4E-14 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 Pfam PF13091 PLD-like domain 323 449 3.3E-27 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 Gene3D G3DSA:3.30.870.10 109 301 3.7E-47 T 13-10-2018 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 5 482 1.1E-197 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 PIRSF PIRSF000850 306 395 0.17 T 13-10-2018 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 PIRSF PIRSF000850 107 277 0.095 T 13-10-2018 RA13_04170 27d7f14d8c5a414a9a75dea65e8ca002 482 PIRSF PIRSF000850 383 477 0.16 T 13-10-2018 RA13_21325 40d3ff65b15ec7de65aab2bc039b93ae 95 Gene3D G3DSA:3.30.70.100 1 95 5.5E-36 T 13-10-2018 RA13_21325 40d3ff65b15ec7de65aab2bc039b93ae 95 SUPERFAMILY SSF54909 1 95 5.65E-26 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_21325 40d3ff65b15ec7de65aab2bc039b93ae 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 1.1E-12 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 SMART SM00478 39 187 3.1E-70 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 ProSitePatterns PS01155 Endonuclease III family signature. 103 132 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 SUPERFAMILY SSF48150 3 210 5.02E-73 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 Gene3D G3DSA:1.10.340.30 22 133 2.1E-81 T 13-10-2018 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 189 205 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 TIGRFAM TIGR01083 nth: endonuclease III 5 196 5.5E-88 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 SMART SM00525 188 208 4.9E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 170 8.1E-24 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 PIRSF PIRSF001435 3 214 1.7E-57 T 13-10-2018 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 189 205 6.0E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 Hamap MF_00942 Endonuclease III [nth]. 1 211 39.302 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 Gene3D G3DSA:1.10.1670.10 17 205 2.1E-81 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RA13_11265 e52d14c8d00c0b5369b0849b00c4fd26 219 Pfam PF00633 Helix-hairpin-helix motif 100 128 9.7E-10 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RA13_00460 2af8a345c120e16d128b19b7dde04b04 79 Pfam PF10852 Protein of unknown function (DUF2651) 6 76 3.6E-22 T 13-10-2018 IPR020258 Uncharacterised protein family YbeF RA13_00460 2af8a345c120e16d128b19b7dde04b04 79 ProDom PD060054 MEMBRANE SPANNING TRANSMEMBRANE YBEF 1 71 5.0E-23 T 13-10-2018 IPR020258 Uncharacterised protein family YbeF RA13_03245 5b0fb937252bed82cbc7b9173aacae1a 221 Pfam PF02080 TrkA-C domain 153 218 2.6E-10 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RA13_03245 5b0fb937252bed82cbc7b9173aacae1a 221 Pfam PF02254 TrkA-N domain 8 123 1.7E-27 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RA13_03245 5b0fb937252bed82cbc7b9173aacae1a 221 Gene3D G3DSA:3.40.50.720 2 140 6.5E-39 T 13-10-2018 RA13_03245 5b0fb937252bed82cbc7b9173aacae1a 221 SUPERFAMILY SSF116726 135 218 5.23E-17 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_03245 5b0fb937252bed82cbc7b9173aacae1a 221 SUPERFAMILY SSF51735 6 135 2.36E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_03245 5b0fb937252bed82cbc7b9173aacae1a 221 Gene3D G3DSA:3.30.70.1450 141 221 9.1E-25 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 SMART SM00448 3 113 1.2E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 Gene3D G3DSA:3.40.50.2300 2 134 2.9E-30 T 13-10-2018 RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 Gene3D G3DSA:1.10.10.10 135 225 4.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 222 1.7E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 SMART SM00862 151 222 1.6E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 Pfam PF00072 Response regulator receiver domain 5 113 2.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 SUPERFAMILY SSF46894 130 223 1.42E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_05955 6f8ce0ef9e16a93134da5129e044c06a 225 SUPERFAMILY SSF52172 4 117 2.56E-31 T 13-10-2018 IPR011006 CheY-like superfamily RA13_01025 061ab000543b7ecf744dcf98134afbaa 113 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 30.61 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01025 061ab000543b7ecf744dcf98134afbaa 113 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01025 061ab000543b7ecf744dcf98134afbaa 113 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 1.1E-36 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RA13_01025 061ab000543b7ecf744dcf98134afbaa 113 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 5.1E-54 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01025 061ab000543b7ecf744dcf98134afbaa 113 SUPERFAMILY SSF54843 1 112 9.55E-44 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_01025 061ab000543b7ecf744dcf98134afbaa 113 Gene3D G3DSA:3.90.470.10 1 113 7.7E-51 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 Pfam PF12848 ABC transporter 230 315 3.3E-21 T 13-10-2018 IPR032781 ABC-transporter extension domain RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 Gene3D G3DSA:3.40.50.300 3 285 5.1E-66 T 13-10-2018 RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 SUPERFAMILY SSF52540 4 245 1.29E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 SUPERFAMILY SSF52540 307 507 6.83E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 Pfam PF00005 ABC transporter 20 191 1.3E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 SMART SM00382 349 518 1.1E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 SMART SM00382 28 238 8.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 Pfam PF00005 ABC transporter 342 469 2.6E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19675 6350a9b40ff415a751cf0c8c0f7620de 518 Gene3D G3DSA:3.40.50.300 289 515 2.2E-44 T 13-10-2018 RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 Gene3D G3DSA:2.10.240.10 215 256 4.7E-20 T 13-10-2018 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 PIRSF PIRSF006816 1 256 2.1E-72 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 Gene3D G3DSA:3.40.50.80 102 214 3.2E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 Pfam PF00175 Oxidoreductase NAD-binding domain 112 202 5.4E-7 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 SUPERFAMILY SSF52343 94 255 5.89E-33 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 Gene3D G3DSA:2.40.30.10 2 97 3.7E-28 T 13-10-2018 RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 SUPERFAMILY SSF63380 3 99 1.09E-21 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 Hamap MF_01211 Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [pyrK]. 3 256 38.571 T 13-10-2018 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit RA13_15415 6e2ec01b3a55bd5f945b37a763f6e251 256 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 215 254 6.0E-17 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 372 30.71 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 341 8.7E-130 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Gene3D G3DSA:3.30.300.20 198 276 1.0E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_14870 6d0070979de30e46c46142bad05de0dc 372 SUPERFAMILY SSF54814 199 277 2.03E-30 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 SMART SM00316 133 199 3.5E-11 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 SUPERFAMILY SSF50249 132 198 8.21E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Gene3D G3DSA:3.30.1480.10 1 124 6.7E-52 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Gene3D G3DSA:3.30.300.20 277 370 8.9E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_14870 6d0070979de30e46c46142bad05de0dc 372 SUPERFAMILY SSF69705 1 126 1.44E-45 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 SMART SM00322 302 356 44.0 T 13-10-2018 IPR004087 K Homology domain GO:0003676 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 SMART SM00322 229 301 2.6E-5 T 13-10-2018 IPR004087 K Homology domain GO:0003676 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Pfam PF00575 S1 RNA binding domain 133 195 3.0E-12 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Gene3D G3DSA:2.40.50.140 136 197 1.2E-24 T 13-10-2018 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Pfam PF08529 NusA N-terminal domain 4 123 9.0E-47 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 Pfam PF13184 NusA-like KH domain 229 296 1.4E-28 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 RA13_14870 6d0070979de30e46c46142bad05de0dc 372 SUPERFAMILY SSF54814 278 341 6.02E-16 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 Gene3D G3DSA:3.40.10.10 2 75 5.8E-32 T 13-10-2018 IPR035451 Ada-like domain superfamily RA13_01925 289c05c8693ade40bbc66a3548440f41 188 SMART SM00342 98 181 4.0E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 135 177 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 SUPERFAMILY SSF57884 8 88 3.66E-32 T 13-10-2018 IPR035451 Ada-like domain superfamily RA13_01925 289c05c8693ade40bbc66a3548440f41 188 Gene3D G3DSA:1.10.10.60 132 186 7.4E-16 T 13-10-2018 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 Gene3D G3DSA:1.10.10.60 80 131 3.8E-14 T 13-10-2018 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 Pfam PF02805 Metal binding domain of Ada 10 73 8.0E-32 T 13-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 PIRSF PIRSF000408 1 188 7.1E-83 T 13-10-2018 IPR016220 Methylphosphotriester-DNA alkyltransferase, AdaA RA13_01925 289c05c8693ade40bbc66a3548440f41 188 SUPERFAMILY SSF46689 82 132 8.51E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 150 165 4.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 165 181 4.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 SUPERFAMILY SSF46689 135 182 1.08E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_01925 289c05c8693ade40bbc66a3548440f41 188 Pfam PF12833 Helix-turn-helix domain 104 182 9.1E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 SUPERFAMILY SSF53681 110 264 7.36E-38 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 181 191 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 TIGRFAM TIGR00067 glut_race: glutamate racemase 6 255 6.5E-103 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 71 79 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 Gene3D G3DSA:3.40.50.1860 96 208 9.3E-98 T 13-10-2018 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 Gene3D G3DSA:3.40.50.1860 5 242 9.3E-98 T 13-10-2018 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 Hamap MF_00258 Glutamate racemase [murI]. 4 257 40.846 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 Pfam PF01177 Asp/Glu/Hydantoin racemase 6 216 2.8E-40 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_08525 17f3449e81cb20b0239b5113413f39eb 272 SUPERFAMILY SSF53681 5 108 1.96E-36 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 SMART SM00862 144 217 7.5E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 Gene3D G3DSA:1.10.10.10 126 222 1.1E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 Pfam PF00072 Response regulator receiver domain 6 111 3.9E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 SUPERFAMILY SSF46894 125 217 4.54E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 SMART SM00448 4 112 4.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 217 3.1E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 Gene3D G3DSA:3.40.50.2300 1 125 6.4E-30 T 13-10-2018 RA13_00535 94cf546de59997c7d8f0bd2357191cc4 223 SUPERFAMILY SSF52172 1 123 4.27E-32 T 13-10-2018 IPR011006 CheY-like superfamily RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 224 256 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 29 421 1.6E-170 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 1 422 43.045 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 Gene3D G3DSA:3.40.50.1980 228 344 5.2E-127 T 13-10-2018 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 SUPERFAMILY SSF53720 7 421 1.04E-86 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PIRSF PIRSF000099 5 425 4.3E-173 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 130 156 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 315 340 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 224 245 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 29 53 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 246 265 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 PRINTS PR00083 Histidinol dehydrogenase signature 356 374 1.9E-89 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 Gene3D G3DSA:3.40.50.1980 27 226 5.2E-127 T 13-10-2018 RA13_05055 46fed6d9f3f60df60c7b9e4543197b58 427 Pfam PF00815 Histidinol dehydrogenase 22 421 2.2E-173 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 PRINTS PR00110 Alpha-amylase signature 211 222 3.5E-10 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 PRINTS PR00110 Alpha-amylase signature 132 143 3.5E-10 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 PRINTS PR00110 Alpha-amylase signature 300 312 3.5E-10 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 PRINTS PR00110 Alpha-amylase signature 99 116 3.5E-10 T 13-10-2018 IPR006046 Alpha amylase GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+3.2.1.1|Reactome: R-HSA-189085 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 Gene3D G3DSA:2.60.40.10 560 659 9.6E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 Gene3D G3DSA:2.60.40.1180 389 466 6.7E-23 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 SMART SM00632 393 468 4.3E-9 T 13-10-2018 IPR031319 Alpha-amylase, C-terminal domain Reactome: R-HSA-189085 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 SUPERFAMILY SSF51445 47 354 1.51E-59 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 Gene3D G3DSA:3.20.20.80 45 388 4.1E-151 T 13-10-2018 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 Pfam PF16738 Starch-binding module 26 567 638 6.7E-19 T 13-10-2018 IPR031965 Starch-binding module 26 KEGG: 00500+3.2.1.1 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 SUPERFAMILY SSF51011 392 465 4.37E-16 T 13-10-2018 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 Pfam PF00128 Alpha amylase, catalytic domain 69 322 7.3E-17 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_11665 091781e6f39c78341f7ac2aca9ad99f3 666 SMART SM00642 50 366 1.8E-18 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_21405 859c61b6d677c28c88f0bd39310bba9b 481 Pfam PF02378 Phosphotransferase system, EIIC 24 282 3.7E-20 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_21405 859c61b6d677c28c88f0bd39310bba9b 481 Gene3D G3DSA:3.40.50.2300 381 481 5.5E-40 T 13-10-2018 RA13_21405 859c61b6d677c28c88f0bd39310bba9b 481 SUPERFAMILY SSF52794 392 481 7.72E-28 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_21405 859c61b6d677c28c88f0bd39310bba9b 481 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 394 478 1.8E-13 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RA13_21405 859c61b6d677c28c88f0bd39310bba9b 481 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 14 352 6.4E-189 T 13-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 RA13_09825 60cd858814309593367c61a7a55a590a 300 SUPERFAMILY SSF53850 46 293 2.96E-72 T 13-10-2018 RA13_09825 60cd858814309593367c61a7a55a590a 300 Gene3D G3DSA:3.40.190.10 48 286 1.4E-85 T 13-10-2018 RA13_09825 60cd858814309593367c61a7a55a590a 300 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 1 286 2.5E-83 T 13-10-2018 IPR011862 Phosphate binding protein GO:0042301 RA13_09825 60cd858814309593367c61a7a55a590a 300 Gene3D G3DSA:3.40.190.10 120 242 1.4E-85 T 13-10-2018 RA13_09825 60cd858814309593367c61a7a55a590a 300 Pfam PF12849 PBP superfamily domain 35 272 1.9E-41 T 13-10-2018 IPR024370 PBP domain RA13_04830 bd3aaee251d1cef0a8aa72657dc66a36 298 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 184 1.7E-55 T 13-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 RA13_04830 bd3aaee251d1cef0a8aa72657dc66a36 298 Gene3D G3DSA:1.20.1330.10 40 244 5.7E-48 T 13-10-2018 RA13_04830 bd3aaee251d1cef0a8aa72657dc66a36 298 Pfam PF00700 Bacterial flagellin C-terminal helical region 215 297 6.0E-6 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RA13_04830 bd3aaee251d1cef0a8aa72657dc66a36 298 Pfam PF00669 Bacterial flagellin N-terminal helical region 7 139 7.2E-25 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RA13_04830 bd3aaee251d1cef0a8aa72657dc66a36 298 SUPERFAMILY SSF64518 1 298 6.8E-67 T 13-10-2018 RA13_10350 cd48840ae4e5ecd30d8bdb5cf9803218 240 SMART SM00382 26 219 2.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_10350 cd48840ae4e5ecd30d8bdb5cf9803218 240 SUPERFAMILY SSF52540 1 235 2.54E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10350 cd48840ae4e5ecd30d8bdb5cf9803218 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_10350 cd48840ae4e5ecd30d8bdb5cf9803218 240 Pfam PF00005 ABC transporter 17 165 7.5E-39 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_10350 cd48840ae4e5ecd30d8bdb5cf9803218 240 Gene3D G3DSA:3.40.50.300 1 240 6.8E-82 T 13-10-2018 RA13_10350 cd48840ae4e5ecd30d8bdb5cf9803218 240 PIRSF PIRSF039085 1 240 8.3E-115 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 167 269 1.5E-34 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 Gene3D G3DSA:2.40.500.20 161 280 3.8E-43 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 PRINTS PR01703 Manganese superoxide dismutase signature 196 204 1.2E-20 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 PRINTS PR01703 Manganese superoxide dismutase signature 143 156 1.2E-20 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 PRINTS PR01703 Manganese superoxide dismutase signature 234 246 1.2E-20 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 PRINTS PR01703 Manganese superoxide dismutase signature 83 94 1.2E-20 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 PRINTS PR01703 Manganese superoxide dismutase signature 104 117 1.2E-20 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 236 243 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 SUPERFAMILY SSF46609 73 161 1.31E-30 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 SUPERFAMILY SSF54719 159 274 4.32E-42 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 79 159 7.5E-27 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12230 0efe68c300ab38a1a63a6bd583bf01e6 281 Gene3D G3DSA:1.10.287.990 97 160 1.8E-23 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Pfam PF01541 GIY-YIG catalytic domain 16 90 1.3E-9 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 6 570 2.4E-233 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 SUPERFAMILY SSF47781 502 589 1.08E-20 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Gene3D G3DSA:4.10.860.10 195 232 4.4E-6 T 13-10-2018 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Hamap MF_00203 UvrABC system protein C [uvrC]. 2 587 29.059 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Gene3D G3DSA:3.40.1440.10 1 99 1.5E-38 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Pfam PF02151 UvrB/uvrC motif 197 229 1.7E-10 T 13-10-2018 IPR001943 UVR domain GO:0005515 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 372 523 2.3E-57 T 13-10-2018 IPR001162 UvrC family homology region RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 SUPERFAMILY SSF82771 14 97 4.71E-21 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Gene3D G3DSA:1.10.150.20 527 588 9.6E-22 T 13-10-2018 RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 Gene3D G3DSA:3.30.420.340 365 523 3.6E-63 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 SMART SM00465 15 95 5.9E-24 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_08480 ac3ecf55a56312988bf1d25a19bfde0f 590 SUPERFAMILY SSF46600 182 235 4.32E-15 T 13-10-2018 IPR036876 UVR domain superfamily RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 SUPERFAMILY SSF46785 1 111 1.36E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.7E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 SUPERFAMILY SSF53850 90 292 3.41E-45 T 13-10-2018 RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 Gene3D G3DSA:1.10.10.10 1 92 5.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 Gene3D G3DSA:3.40.190.290 93 293 6.6E-58 T 13-10-2018 RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 Pfam PF03466 LysR substrate binding domain 90 290 1.8E-48 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.5E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.5E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03370 224a67c700371861c6e4ed95d3f3913e 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.5E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 Gene3D G3DSA:3.40.50.12160 3 132 3.5E-24 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 Pfam PF04055 Radical SAM superfamily 149 319 1.3E-29 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 Pfam PF00919 Uncharacterized protein family UPF0004 4 98 9.5E-26 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 Pfam PF01938 TRAM domain 392 434 6.5E-6 T 13-10-2018 IPR002792 TRAM domain RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 6 426 4.0E-107 T 13-10-2018 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 423 1.9E-142 T 13-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 147 167 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 SUPERFAMILY SSF102114 125 363 6.93E-59 T 13-10-2018 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 SMART SM00729 143 361 2.9E-61 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 431 4.8E-153 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RA13_09590 295d7ff2b3e49d17cd4c2bc0c3358254 451 Gene3D G3DSA:3.80.30.20 140 374 3.9E-88 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 PIRSF PIRSF006160 1 156 3.7E-60 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 3.8E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 3.8E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 3.8E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 78 96 3.8E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 119 138 3.8E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 SUPERFAMILY SSF63411 4 150 2.01E-58 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 8 148 1.0E-77 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 150 7.7E-51 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 157 32.408 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_07385 2338f75702ecb9a82929fe89b02bbd10 157 Gene3D G3DSA:3.30.1360.80 1 157 3.6E-63 T 13-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_16630 cd70c77b1f47220fd221d508f15c591b 277 Pfam PF01740 STAS domain 173 271 4.4E-14 T 13-10-2018 IPR002645 STAS domain RA13_16630 cd70c77b1f47220fd221d508f15c591b 277 SUPERFAMILY SSF52091 164 272 1.0E-15 T 13-10-2018 IPR036513 STAS domain superfamily RA13_16630 cd70c77b1f47220fd221d508f15c591b 277 Gene3D G3DSA:3.30.750.24 162 277 1.1E-35 T 13-10-2018 IPR036513 STAS domain superfamily RA13_16130 0bfa6a9d8eb814d601c25bfb7073b6c2 147 SUPERFAMILY SSF54631 12 140 2.24E-28 T 13-10-2018 RA13_16130 0bfa6a9d8eb814d601c25bfb7073b6c2 147 Gene3D G3DSA:3.10.580.10 1 147 3.0E-61 T 13-10-2018 RA13_12480 57637dac3ba62f3fdc92ba374c01a01e 329 SUPERFAMILY SSF51735 133 303 6.1E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_12480 57637dac3ba62f3fdc92ba374c01a01e 329 SMART SM00829 10 326 6.6E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RA13_12480 57637dac3ba62f3fdc92ba374c01a01e 329 SUPERFAMILY SSF50129 1 162 5.17E-32 T 13-10-2018 IPR011032 GroES-like superfamily RA13_12480 57637dac3ba62f3fdc92ba374c01a01e 329 Pfam PF00107 Zinc-binding dehydrogenase 169 290 8.5E-27 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_12480 57637dac3ba62f3fdc92ba374c01a01e 329 Gene3D G3DSA:3.90.180.10 18 318 1.9E-85 T 13-10-2018 RA13_12480 57637dac3ba62f3fdc92ba374c01a01e 329 Gene3D G3DSA:3.40.50.720 139 276 1.9E-85 T 13-10-2018 RA13_12480 57637dac3ba62f3fdc92ba374c01a01e 329 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 125 1.6E-12 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 SMART SM00418 14 87 4.2E-26 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 Pfam PF01022 Bacterial regulatory protein, arsR family 21 66 1.0E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 SUPERFAMILY SSF46785 11 84 6.57E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 Gene3D G3DSA:1.10.10.10 2 95 3.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 16 31 2.5E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 35 46 2.5E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 2.5E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20710 5f4f119704343ca4fd2ca608293f7a2d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 2.5E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 Pfam PF00072 Response regulator receiver domain 5 114 8.5E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 Gene3D G3DSA:1.10.10.10 142 239 1.2E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 SMART SM00862 157 233 7.2E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 SMART SM00448 3 114 5.9E-50 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 SUPERFAMILY SSF52172 2 126 1.08E-43 T 13-10-2018 IPR011006 CheY-like superfamily RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 233 5.3E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 SUPERFAMILY SSF46894 133 234 5.67E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_08140 904512c6ba29940b325eb7f401b86ae7 240 Gene3D G3DSA:3.40.50.12740 1 141 2.9E-48 T 13-10-2018 RA13_17730 e185fd20f9440a4d3b84f3c7c1a29a9e 478 SUPERFAMILY SSF55103 187 466 4.8E-17 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RA13_17730 e185fd20f9440a4d3b84f3c7c1a29a9e 478 Pfam PF01565 FAD binding domain 50 181 8.5E-33 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RA13_17730 e185fd20f9440a4d3b84f3c7c1a29a9e 478 SUPERFAMILY SSF56176 27 208 3.69E-40 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RA13_17730 e185fd20f9440a4d3b84f3c7c1a29a9e 478 Gene3D G3DSA:3.30.465.40 44 228 4.6E-28 T 13-10-2018 RA13_08795 09164f1e6520c77ae121cdff9cc37cae 395 Gene3D G3DSA:1.10.260.50 13 277 3.1E-115 T 13-10-2018 RA13_08795 09164f1e6520c77ae121cdff9cc37cae 395 Pfam PF00266 Aminotransferase class-V 2 366 1.9E-83 T 13-10-2018 IPR000192 Aminotransferase class V domain RA13_08795 09164f1e6520c77ae121cdff9cc37cae 395 Gene3D G3DSA:3.90.1150.10 2 368 3.1E-115 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_08795 09164f1e6520c77ae121cdff9cc37cae 395 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 191 210 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RA13_08795 09164f1e6520c77ae121cdff9cc37cae 395 SUPERFAMILY SSF53383 1 370 1.32E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_08795 09164f1e6520c77ae121cdff9cc37cae 395 Gene3D G3DSA:3.40.640.10 59 233 3.1E-115 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_08795 09164f1e6520c77ae121cdff9cc37cae 395 PIRSF PIRSF005572 1 381 7.4E-121 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RA13_08095 da7951594f7606e38e0fa43299066c17 325 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 315 49.152 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 1.0E-170 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 SUPERFAMILY SSF52096 6 313 2.3E-99 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_08095 da7951594f7606e38e0fa43299066c17 325 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 147 5.0E-66 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 Gene3D G3DSA:3.90.226.10 2 316 5.9E-121 T 13-10-2018 RA13_08095 da7951594f7606e38e0fa43299066c17 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 87 98 8.0E-48 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 112 130 8.0E-48 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 168 181 8.0E-48 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 196 205 8.0E-48 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 152 165 8.0E-48 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_08095 da7951594f7606e38e0fa43299066c17 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 133 149 8.0E-48 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Gene3D G3DSA:3.40.1170.10 1 117 2.3E-49 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Pfam PF05190 MutS family domain IV 415 506 1.4E-29 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 SUPERFAMILY SSF55271 2 110 3.4E-42 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Gene3D G3DSA:3.40.50.300 556 860 1.3E-102 T 13-10-2018 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 4 851 25.496 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Pfam PF05188 MutS domain II 125 239 1.0E-13 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Gene3D G3DSA:3.30.420.110 124 247 2.1E-13 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Pfam PF00488 MutS domain V 599 785 2.8E-85 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 SUPERFAMILY SSF53150 114 266 6.54E-29 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Pfam PF01624 MutS domain I 5 116 1.8E-46 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 676 692 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 PIRSF PIRSF037677 155 840 3.5E-129 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 PIRSF PIRSF037677 1 164 3.1E-31 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 SUPERFAMILY SSF52540 555 786 1.71E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 SMART SM00534 595 782 4.9E-123 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 4 857 0.0 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 SUPERFAMILY SSF48334 253 552 1.7E-87 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Gene3D G3DSA:1.10.1420.10 252 547 6.3E-100 T 13-10-2018 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Gene3D G3DSA:1.10.1420.10 387 523 6.3E-100 T 13-10-2018 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 Pfam PF05192 MutS domain III 258 547 3.0E-44 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RA13_14650 28879670f0a0dcd5c89ea99ca9908f9d 860 SMART SM00533 270 578 2.9E-112 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RA13_13200 6d9fb3f02d1e803f215917b70b88e4af 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 301 1.3E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_13200 6d9fb3f02d1e803f215917b70b88e4af 312 Gene3D G3DSA:1.10.3720.10 70 311 2.3E-73 T 13-10-2018 IPR035906 MetI-like superfamily RA13_13200 6d9fb3f02d1e803f215917b70b88e4af 312 SUPERFAMILY SSF161098 74 299 4.45E-61 T 13-10-2018 IPR035906 MetI-like superfamily RA13_13200 6d9fb3f02d1e803f215917b70b88e4af 312 SUPERFAMILY SSF160964 22 61 3.53E-6 T 13-10-2018 RA13_16080 d7336e853bf3b27b16965bb017b03a60 152 SUPERFAMILY SSF52833 2 141 2.78E-33 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_16080 d7336e853bf3b27b16965bb017b03a60 152 Gene3D G3DSA:3.40.30.10 1 148 2.0E-40 T 13-10-2018 RA13_16080 d7336e853bf3b27b16965bb017b03a60 152 Pfam PF00578 AhpC/TSA family 5 125 5.3E-12 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Gene3D G3DSA:3.30.70.240 602 672 1.1E-95 T 13-10-2018 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Gene3D G3DSA:2.40.30.10 293 403 4.2E-47 T 13-10-2018 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 SUPERFAMILY SSF54211 477 597 9.86E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Pfam PF03764 Elongation factor G, domain IV 477 595 1.6E-46 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Hamap MF_00054_B Elongation factor G [fusA]. 6 689 114.007 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Pfam PF00679 Elongation factor G C-terminus 598 684 2.7E-32 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 690 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Gene3D G3DSA:3.30.70.870 404 481 1.1E-32 T 13-10-2018 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Pfam PF14492 Elongation Factor G, domain II 402 475 7.2E-36 T 13-10-2018 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 SMART SM00838 598 685 1.0E-59 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 SUPERFAMILY SSF54980 400 478 2.95E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Pfam PF03144 Elongation factor Tu domain 2 322 389 1.9E-16 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Gene3D G3DSA:3.30.230.10 482 685 1.1E-95 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 SMART SM00889 478 596 1.1E-73 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 SUPERFAMILY SSF54980 598 688 3.02E-31 T 13-10-2018 IPR035647 EF-G domain III/V-like RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 SUPERFAMILY SSF52540 6 279 6.64E-111 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Pfam PF00009 Elongation factor Tu GTP binding domain 9 279 2.9E-69 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 SUPERFAMILY SSF50447 263 402 1.09E-36 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 Gene3D G3DSA:3.40.50.300 1 292 3.4E-114 T 13-10-2018 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 181 2.0E-48 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 PRINTS PR00315 GTP-binding elongation factor signature 78 88 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 PRINTS PR00315 GTP-binding elongation factor signature 94 105 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 PRINTS PR00315 GTP-binding elongation factor signature 12 25 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 PRINTS PR00315 GTP-binding elongation factor signature 130 139 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01070 aac8a872ba31d9c7e016a71cbd7e1b21 692 PRINTS PR00315 GTP-binding elongation factor signature 58 66 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_17495 91c3a05b568bfbd66c7323e448682e4a 266 Pfam PF01513 ATP-NAD kinase 33 185 1.8E-23 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RA13_17495 91c3a05b568bfbd66c7323e448682e4a 266 Gene3D G3DSA:2.60.200.30 102 240 5.5E-99 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RA13_17495 91c3a05b568bfbd66c7323e448682e4a 266 SUPERFAMILY SSF111331 21 261 6.02E-62 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RA13_17495 91c3a05b568bfbd66c7323e448682e4a 266 Gene3D G3DSA:3.40.50.10330 16 262 5.5E-99 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RA13_17495 91c3a05b568bfbd66c7323e448682e4a 266 Hamap MF_00361 NAD kinase [nadK]. 1 263 23.044 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 371 1.3E-65 T 13-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 Gene3D G3DSA:3.40.50.620 175 401 1.0E-72 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 Gene3D G3DSA:3.30.2130.30 1 174 7.0E-60 T 13-10-2018 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 SMART SM00981 74 165 5.6E-24 T 13-10-2018 IPR004114 THUMP domain GO:0003723 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 Pfam PF02926 THUMP domain 31 164 9.9E-26 T 13-10-2018 IPR004114 THUMP domain GO:0003723 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 SUPERFAMILY SSF143437 3 173 4.36E-52 T 13-10-2018 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 SUPERFAMILY SSF52402 174 383 1.1E-49 T 13-10-2018 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 6 372 8.0E-148 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 RA13_07960 28d90bb48546089d639fd3f3c15866c6 401 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 401 164.156 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 RA13_00095 0b6095e742f72d79a0766b7782760869 231 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_00095 0b6095e742f72d79a0766b7782760869 231 SMART SM00382 28 215 3.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_00095 0b6095e742f72d79a0766b7782760869 231 Gene3D G3DSA:3.40.50.300 1 220 1.0E-59 T 13-10-2018 RA13_00095 0b6095e742f72d79a0766b7782760869 231 SUPERFAMILY SSF52540 3 215 1.13E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00095 0b6095e742f72d79a0766b7782760869 231 Pfam PF00005 ABC transporter 19 165 1.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19485 beb4ce6bba1650bc2a199c3ac3a4a004 395 SUPERFAMILY SSF103473 6 392 3.53E-51 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_19485 beb4ce6bba1650bc2a199c3ac3a4a004 395 Gene3D G3DSA:1.20.1250.20 1 190 4.0E-23 T 13-10-2018 RA13_19485 beb4ce6bba1650bc2a199c3ac3a4a004 395 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 79 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_19485 beb4ce6bba1650bc2a199c3ac3a4a004 395 Gene3D G3DSA:1.20.1250.20 213 393 1.0E-22 T 13-10-2018 RA13_19485 beb4ce6bba1650bc2a199c3ac3a4a004 395 Pfam PF07690 Major Facilitator Superfamily 13 299 3.6E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 9 458 6.4E-117 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 Pfam PF00083 Sugar (and other) transporter 30 462 6.7E-116 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 ProSitePatterns PS00216 Sugar transport proteins signature 1. 80 97 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 ProSitePatterns PS00216 Sugar transport proteins signature 1. 321 338 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 SUPERFAMILY SSF103473 1 459 9.42E-79 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 Gene3D G3DSA:1.20.1250.20 18 462 1.7E-133 T 13-10-2018 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 PRINTS PR00171 Sugar transporter signature 277 287 9.7E-22 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 PRINTS PR00171 Sugar transporter signature 34 44 9.7E-22 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 PRINTS PR00171 Sugar transporter signature 117 136 9.7E-22 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 PRINTS PR00171 Sugar transporter signature 363 384 9.7E-22 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 PRINTS PR00171 Sugar transporter signature 386 398 9.7E-22 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_05440 ef954785a9aa0befb2e2609c0722faf5 474 ProSitePatterns PS00217 Sugar transport proteins signature 2. 122 147 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:1.10.1200.10 3032 3114 2.1E-26 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.10 1058 1416 1.9E-146 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 3119 3298 4.22E-33 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 3309 3556 3.89E-36 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.300.30 859 960 4.3E-31 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.300.30 2934 3031 1.3E-33 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3431 3579 5.0E-52 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 2272 2514 3.11E-58 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.10 2102 2460 3.7E-149 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF13193 AMP-binding enzyme C-terminal domain 1916 1988 6.8E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF13193 AMP-binding enzyme C-terminal domain 872 945 4.2E-6 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF13193 AMP-binding enzyme C-terminal domain 2947 3019 6.5E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 ProSitePatterns PS00012 Phosphopantetheine attachment site. 994 1009 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_21695 92524378df6182598fe42f6d5670c753 3589 SMART SM01294 3042 3109 0.0032 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00668 Condensation domain 2098 2531 4.9E-144 T 13-10-2018 IPR001242 Condensation domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00668 Condensation domain 3123 3572 7.7E-120 T 13-10-2018 IPR001242 Condensation domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00668 Condensation domain 7 450 6.9E-135 T 13-10-2018 IPR001242 Condensation domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00668 Condensation domain 1054 1487 3.7E-143 T 13-10-2018 IPR001242 Condensation domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2039 2054 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:1.10.1200.10 961 1044 3.8E-23 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:1.10.1200.10 2005 2087 2.2E-24 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21695 92524378df6182598fe42f6d5670c753 3589 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3069 3084 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 1060 1222 4.08E-42 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.30 191 446 1.0E-125 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 492 887 1.4E-132 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2572 2963 2.6E-123 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1527 1932 4.3E-134 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 2104 2266 2.45E-45 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF47336 3037 3110 1.11E-20 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF56801 1466 2028 4.45E-146 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.10 3115 3293 1.6E-57 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00550 Phosphopantetheine attachment site 2016 2079 6.8E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00550 Phosphopantetheine attachment site 3047 3109 8.1E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00550 Phosphopantetheine attachment site 972 1035 2.3E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF47336 2009 2114 3.01E-18 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00501 AMP-binding enzyme 1507 1908 5.1E-102 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00501 AMP-binding enzyme 471 864 1.3E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Pfam PF00501 AMP-binding enzyme 2551 2939 3.4E-95 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 12 189 4.22E-43 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.30 3294 3563 3.9E-68 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.30 1226 1472 1.9E-146 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 1229 1475 1.89E-61 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF56801 431 984 1.83E-150 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.300.30 1903 2004 1.3E-28 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF47336 963 1070 6.41E-18 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF52777 190 440 2.56E-44 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 ProSitePatterns PS00455 Putative AMP-binding domain signature. 611 622 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_21695 92524378df6182598fe42f6d5670c753 3589 SUPERFAMILY SSF56801 2509 3058 2.35E-155 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.30 2270 2516 3.7E-149 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.40.50.12780 456 858 5.9E-136 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.40.50.12780 1492 1902 3.5E-129 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.40.50.12780 2537 2933 1.2E-126 T 13-10-2018 RA13_21695 92524378df6182598fe42f6d5670c753 3589 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2696 2707 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_21695 92524378df6182598fe42f6d5670c753 3589 Gene3D G3DSA:3.30.559.10 12 382 1.0E-125 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SMART SM00823 Phosphopantetheine attachment site 2015 2084 0.0018 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SMART SM00823 Phosphopantetheine attachment site 971 1039 0.003 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_21695 92524378df6182598fe42f6d5670c753 3589 SMART SM00823 Phosphopantetheine attachment site 3045 3113 3.5E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_21695 92524378df6182598fe42f6d5670c753 3589 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1646 1657 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 SMART SM00420 5 57 4.9E-22 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 23 37 9.3E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 37 55 9.3E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 ProSitePatterns PS00894 DeoR-type HTH domain signature. 5 39 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 SMART SM01134 71 232 1.3E-59 T 13-10-2018 RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 SUPERFAMILY SSF46785 5 65 2.64E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 Pfam PF08220 DeoR-like helix-turn-helix domain 5 60 3.2E-21 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 Pfam PF00455 DeoR C terminal sensor domain 73 230 8.7E-51 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 Gene3D G3DSA:1.10.10.10 2 54 1.6E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_02560 baf56623559ea1e8507cb28d11eca54a 253 SUPERFAMILY SSF100950 72 232 2.72E-32 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_06420 76689341d8fc12ba274c99b21ca13706 326 Hamap MF_01511 GMP reductase [guaC]. 2 325 64.688 T 13-10-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 RA13_06420 76689341d8fc12ba274c99b21ca13706 326 SMART SM01240 3 326 5.4E-118 T 13-10-2018 RA13_06420 76689341d8fc12ba274c99b21ca13706 326 PIRSF PIRSF036500 1 326 7.2E-198 T 13-10-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 RA13_06420 76689341d8fc12ba274c99b21ca13706 326 Gene3D G3DSA:3.20.20.70 1 326 2.6E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_06420 76689341d8fc12ba274c99b21ca13706 326 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 165 177 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 RA13_06420 76689341d8fc12ba274c99b21ca13706 326 TIGRFAM TIGR01306 GMP_reduct_2: guanosine monophosphate reductase 4 324 5.9E-206 T 13-10-2018 IPR005994 Guanosine monophosphate reductase, type2 GO:0003920|GO:0006163|GO:1902560 KEGG: 00230+1.7.1.7 RA13_06420 76689341d8fc12ba274c99b21ca13706 326 SUPERFAMILY SSF51412 4 314 5.23E-94 T 13-10-2018 RA13_06420 76689341d8fc12ba274c99b21ca13706 326 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 6 311 1.3E-70 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RA13_03110 120a725296464ba5e7c2ae81d4695ae7 445 Pfam PF03390 2-hydroxycarboxylate transporter family 28 438 1.2E-150 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RA13_03110 120a725296464ba5e7c2ae81d4695ae7 445 TIGRFAM TIGR00783 ccs: citrate carrier protein, CCS family 23 439 2.1E-168 T 13-10-2018 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes RA13_03110 120a725296464ba5e7c2ae81d4695ae7 445 PIRSF PIRSF005348 8 445 4.6E-165 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 117 193 3.4E-11 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 Gene3D G3DSA:3.40.50.10860 5 262 1.8E-95 T 13-10-2018 RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 SUPERFAMILY SSF53223 2 101 4.14E-35 T 13-10-2018 RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 273 35.259 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 Gene3D G3DSA:3.40.50.720 101 241 1.8E-95 T 13-10-2018 RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 275 2.6E-106 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 5.3E-32 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RA13_09470 032697e9d06e35a001ff526f1c3d3e22 280 SUPERFAMILY SSF51735 102 273 7.39E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_21900 8ab41bb57459bfd0201419797ca640f7 444 PIRSF PIRSF006060 1 441 7.7E-45 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_21900 8ab41bb57459bfd0201419797ca640f7 444 Pfam PF00324 Amino acid permease 19 384 1.5E-44 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_21900 8ab41bb57459bfd0201419797ca640f7 444 Gene3D G3DSA:1.20.1740.10 8 442 3.6E-47 T 13-10-2018 RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 TIGRFAM TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I 100 456 3.4E-123 T 13-10-2018 IPR010118 Para-aminobenzoate synthase/anthranilate synthase, component I RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 Pfam PF04715 Anthranilate synthase component I, N terminal region 14 150 7.2E-31 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 Gene3D G3DSA:3.60.120.10 1 469 8.8E-164 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 Pfam PF00425 chorismate binding enzyme 200 453 5.0E-97 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 SUPERFAMILY SSF56322 9 462 1.16E-147 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 PRINTS PR00095 Anthranilate synthase component I signature 410 424 2.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 PRINTS PR00095 Anthranilate synthase component I signature 395 409 2.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 PRINTS PR00095 Anthranilate synthase component I signature 301 314 2.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_01335 5c799b3e1e5d03620b82d89667202c1b 471 PRINTS PR00095 Anthranilate synthase component I signature 315 328 2.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_19120 fdf987729b45b8aee35c49f97eff2ba2 176 SUPERFAMILY SSF159234 3 170 4.32E-32 T 13-10-2018 IPR035930 FomD-like superfamily RA13_19120 fdf987729b45b8aee35c49f97eff2ba2 176 PIRSF PIRSF028345 1 176 4.8E-79 T 13-10-2018 IPR016882 Uncharacterised protein family UPF0374 RA13_19120 fdf987729b45b8aee35c49f97eff2ba2 176 Hamap MF_01568 UPF0374 protein . 1 175 49.599 T 13-10-2018 IPR016882 Uncharacterised protein family UPF0374 RA13_19120 fdf987729b45b8aee35c49f97eff2ba2 176 Gene3D G3DSA:2.40.380.10 13 170 2.9E-12 T 13-10-2018 IPR035930 FomD-like superfamily RA13_19120 fdf987729b45b8aee35c49f97eff2ba2 176 Pfam PF04167 Protein of unknown function (DUF402) 60 124 3.1E-17 T 13-10-2018 IPR007295 Domain of unknown function DUF402 RA13_04950 59aa52faf8533a2bf116e2d837185e74 76 Pfam PF09964 Uncharacterized protein conserved in bacteria (DUF2198) 4 74 1.2E-29 T 13-10-2018 IPR019242 Protein of unknown function DUF2198 RA13_02515 9029e4cbd81c136aa41a01cdfd2301c5 445 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 241 252 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_02515 9029e4cbd81c136aa41a01cdfd2301c5 445 Gene3D G3DSA:3.40.309.10 217 419 1.3E-155 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_02515 9029e4cbd81c136aa41a01cdfd2301c5 445 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 213 220 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_02515 9029e4cbd81c136aa41a01cdfd2301c5 445 SUPERFAMILY SSF53720 8 442 1.24E-118 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_02515 9029e4cbd81c136aa41a01cdfd2301c5 445 PIRSF PIRSF036492 1 445 2.9E-166 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RA13_02515 9029e4cbd81c136aa41a01cdfd2301c5 445 Pfam PF00171 Aldehyde dehydrogenase family 8 437 4.1E-94 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_02515 9029e4cbd81c136aa41a01cdfd2301c5 445 Gene3D G3DSA:3.40.605.10 21 439 1.3E-155 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_10025 f6790eee4152c278eb88ca262233756b 111 Gene3D G3DSA:1.10.260.40 1 111 9.4E-34 T 13-10-2018 RA13_10025 f6790eee4152c278eb88ca262233756b 111 SMART SM00530 5 61 2.5E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_10025 f6790eee4152c278eb88ca262233756b 111 Pfam PF01381 Helix-turn-helix 6 58 3.1E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_10025 f6790eee4152c278eb88ca262233756b 111 SUPERFAMILY SSF47406 74 107 1.23E-12 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 RA13_10025 f6790eee4152c278eb88ca262233756b 111 SUPERFAMILY SSF47413 2 64 2.95E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_10025 f6790eee4152c278eb88ca262233756b 111 Pfam PF08671 Anti-repressor SinI 74 101 1.5E-12 T 13-10-2018 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain GO:0006355|GO:0046983 RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 Pfam PF01595 Domain of unknown function DUF21 9 202 2.0E-50 T 13-10-2018 IPR002550 CNNM, transmembrane domain RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 Pfam PF00571 CBS domain 292 341 2.2E-4 T 13-10-2018 IPR000644 CBS domain RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 Pfam PF00571 CBS domain 219 272 3.0E-5 T 13-10-2018 IPR000644 CBS domain RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 SMART SM01091 357 434 1.3E-20 T 13-10-2018 IPR005170 Transporter-associated domain RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 SUPERFAMILY SSF54631 205 344 6.57E-30 T 13-10-2018 RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 SUPERFAMILY SSF56176 355 435 2.24E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 Gene3D G3DSA:3.30.465.10 351 441 1.0E-18 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 Gene3D G3DSA:3.10.580.10 197 350 5.5E-48 T 13-10-2018 RA13_18525 636e4174c721ccc4fdd59efe5dc6c1df 462 Pfam PF03471 Transporter associated domain 358 431 1.9E-18 T 13-10-2018 IPR005170 Transporter-associated domain RA13_12065 8334f2d62d9ae1c7c8ec313d356fc8fd 127 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 6 119 2.2E-25 T 13-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component RA13_12065 8334f2d62d9ae1c7c8ec313d356fc8fd 127 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 10 92 5.4E-6 T 13-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component RA13_03220 d747fce4a089e3d0239813cf353f7904 392 Pfam PF04914 DltD protein 40 385 1.5E-121 T 13-10-2018 IPR006998 DltD RA13_03220 d747fce4a089e3d0239813cf353f7904 392 TIGRFAM TIGR04092 LTA_DltD: D-alanyl-lipoteichoic acid biosynthesis protein DltD 6 384 5.4E-138 T 13-10-2018 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes RA13_03220 d747fce4a089e3d0239813cf353f7904 392 SUPERFAMILY SSF52266 294 385 6.05E-8 T 13-10-2018 RA13_03220 d747fce4a089e3d0239813cf353f7904 392 PIRSF PIRSF021438 1 387 7.5E-154 T 13-10-2018 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 SUPERFAMILY SSF48019 244 361 2.47E-25 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 SUPERFAMILY SSF52540 31 222 1.11E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.2E-44 T 13-10-2018 RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 SMART SM00382 37 179 1.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 Gene3D G3DSA:1.10.8.60 8 235 3.4E-105 T 13-10-2018 RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 Gene3D G3DSA:1.20.272.10 242 363 3.3E-8 T 13-10-2018 RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 Gene3D G3DSA:3.40.50.300 13 177 3.4E-105 T 13-10-2018 RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 358 7.7E-145 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RA13_01645 3cb28453a86f6fea6c90680d21796b7b 564 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 238 361 8.2E-11 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RA13_18140 53815826351f234a207dd6f387ce95fe 345 Pfam PF01032 FecCD transport family 27 338 5.3E-93 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_18140 53815826351f234a207dd6f387ce95fe 345 Gene3D G3DSA:1.10.3470.10 14 343 3.6E-93 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_18140 53815826351f234a207dd6f387ce95fe 345 SUPERFAMILY SSF81345 15 338 4.05E-81 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_00530 69235849218c73efaca2199873c4d682 333 SUPERFAMILY SSF55874 208 327 2.19E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00530 69235849218c73efaca2199873c4d682 333 SMART SM00388 136 199 3.1E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_00530 69235849218c73efaca2199873c4d682 333 SUPERFAMILY SSF47384 126 194 2.16E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_00530 69235849218c73efaca2199873c4d682 333 Gene3D G3DSA:3.30.565.10 203 332 2.9E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00530 69235849218c73efaca2199873c4d682 333 SMART SM00387 245 332 1.0E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_00530 69235849218c73efaca2199873c4d682 333 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 250 330 3.9E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_00530 69235849218c73efaca2199873c4d682 333 Pfam PF00512 His Kinase A (phospho-acceptor) domain 136 195 4.8E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_00530 69235849218c73efaca2199873c4d682 333 Gene3D G3DSA:1.10.287.130 72 193 2.1E-12 T 13-10-2018 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1181 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 SUPERFAMILY SSF64484 5 1182 0.0 T 13-10-2018 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Pfam PF04997 RNA polymerase Rpb1, domain 1 6 331 4.9E-90 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Pfam PF04998 RNA polymerase Rpb1, domain 5 770 1129 9.2E-68 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Pfam PF00623 RNA polymerase Rpb1, domain 2 333 386 5.5E-9 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Pfam PF00623 RNA polymerase Rpb1, domain 2 378 474 2.0E-29 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 4 1195 18.711 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Gene3D G3DSA:1.10.40.90 363 405 1.3E-23 T 13-10-2018 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Gene3D G3DSA:1.10.150.390 1130 1190 1.2E-28 T 13-10-2018 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Gene3D G3DSA:1.10.132.30 660 794 3.3E-59 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Gene3D G3DSA:1.10.1790.20 950 1128 1.2E-66 T 13-10-2018 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Pfam PF05000 RNA polymerase Rpb1, domain 4 692 759 4.5E-14 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Gene3D G3DSA:2.40.50.100 966 1029 1.2E-66 T 13-10-2018 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Pfam PF04983 RNA polymerase Rpb1, domain 3 478 663 5.1E-37 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 SMART SM00663 224 503 2.2E-185 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01090 9d95cc09ce9d9ab053fb0ff4bdcb4bfa 1199 Gene3D G3DSA:1.10.274.100 479 659 7.0E-48 T 13-10-2018 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 Gene3D G3DSA:1.10.390.10 377 521 1.8E-54 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily RA13_15830 5ab09a890261096252fc5dae188d3c91 521 SUPERFAMILY SSF55486 224 521 7.51E-99 T 13-10-2018 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 Gene3D G3DSA:3.10.170.10 224 376 4.1E-57 T 13-10-2018 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 Pfam PF03413 Peptidase propeptide and YPEB domain 139 215 1.7E-11 T 13-10-2018 IPR025711 PepSY domain RA13_15830 5ab09a890261096252fc5dae188d3c91 521 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 225 372 1.1E-51 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 78 126 1.4E-13 T 13-10-2018 IPR011096 FTP domain RA13_15830 5ab09a890261096252fc5dae188d3c91 521 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 448 464 9.3E-29 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 384 395 9.3E-29 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 363 379 9.3E-29 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 327 347 9.3E-29 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 RA13_15830 5ab09a890261096252fc5dae188d3c91 521 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 375 520 6.7E-46 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 RA13_03285 0851af1963f7a4f0d68be71eaabbcfd5 286 Gene3D G3DSA:3.90.550.10 7 278 6.3E-78 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_03285 0851af1963f7a4f0d68be71eaabbcfd5 286 SUPERFAMILY SSF53448 7 278 5.06E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_03285 0851af1963f7a4f0d68be71eaabbcfd5 286 Pfam PF01501 Glycosyl transferase family 8 8 258 1.7E-60 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Gene3D G3DSA:3.40.50.150 275 474 1.2E-63 T 13-10-2018 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Gene3D G3DSA:1.10.287.130 973 1028 5.5E-16 T 13-10-2018 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Pfam PF13596 PAS domain 725 830 2.3E-25 T 13-10-2018 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Gene3D G3DSA:3.30.450.20 844 972 5.8E-24 T 13-10-2018 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SUPERFAMILY SSF55785 846 956 6.28E-20 T 13-10-2018 IPR035965 PAS domain superfamily RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1075 1180 1.5E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SUPERFAMILY SSF47384 965 1029 1.0E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SMART SM00388 969 1032 5.3E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SMART SM00091 840 906 4.1E-4 T 13-10-2018 IPR000014 PAS domain RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SMART SM00091 723 788 23.0 T 13-10-2018 IPR000014 PAS domain RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Gene3D G3DSA:3.30.565.10 1032 1182 2.6E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SUPERFAMILY SSF53335 276 471 2.63E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Pfam PF01339 CheB methylesterase 21 194 2.9E-48 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Pfam PF01739 CheR methyltransferase, SAM binding domain 277 467 1.1E-55 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SMART SM00387 1074 1181 4.9E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SMART SM00138 208 471 3.1E-77 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Pfam PF08448 PAS fold 846 955 5.0E-12 T 13-10-2018 IPR013656 PAS fold-4 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SUPERFAMILY SSF52738 17 201 1.7E-47 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Pfam PF00512 His Kinase A (phospho-acceptor) domain 971 1030 4.9E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Gene3D G3DSA:3.30.450.20 709 843 6.9E-10 T 13-10-2018 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SUPERFAMILY SSF47757 204 278 5.23E-10 T 13-10-2018 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Gene3D G3DSA:3.40.50.180 11 205 4.4E-55 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 SUPERFAMILY SSF55874 1021 1179 1.83E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 845 961 1.2E-15 T 13-10-2018 IPR000014 PAS domain RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 Pfam PF03705 CheR methyltransferase, all-alpha domain 216 263 2.3E-9 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 PRINTS PR00996 Glutamate methyltransferase family signature 311 331 1.5E-27 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 PRINTS PR00996 Glutamate methyltransferase family signature 347 363 1.5E-27 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 PRINTS PR00996 Glutamate methyltransferase family signature 230 243 1.5E-27 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 PRINTS PR00996 Glutamate methyltransferase family signature 432 455 1.5E-27 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 PRINTS PR00996 Glutamate methyltransferase family signature 413 427 1.5E-27 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_18765 3a07f3ca62cab749c34a54dc767f9f22 1182 PRINTS PR00996 Glutamate methyltransferase family signature 269 281 1.5E-27 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Gene3D G3DSA:3.30.980.10 564 699 5.2E-52 T 13-10-2018 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Gene3D G3DSA:3.10.310.40 766 876 2.4E-36 T 13-10-2018 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 SUPERFAMILY SSF50447 455 554 6.25E-19 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_09095 9c400c2567357da7cdf4aa953481acae 878 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 857 0.0 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Gene3D G3DSA:3.30.930.10 3 242 9.0E-96 T 13-10-2018 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 655 698 3.7E-18 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Gene3D G3DSA:2.40.30.130 462 554 8.0E-10 T 13-10-2018 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 SUPERFAMILY SSF55186 554 713 4.71E-52 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 878 185.957 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 SUPERFAMILY SSF101353 246 459 3.4E-68 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Pfam PF02272 DHHA1 domain 735 874 4.4E-30 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 300 313 4.5E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 73 84 4.5E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 4.5E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 276 292 4.5E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 4.5E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Pfam PF01411 tRNA synthetases class II (A) 8 557 8.8E-219 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 Gene3D G3DSA:3.30.54.20 626 679 5.2E-52 T 13-10-2018 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 SUPERFAMILY SSF55681 5 245 9.94E-90 T 13-10-2018 RA13_09095 9c400c2567357da7cdf4aa953481acae 878 SMART SM00863 655 698 2.7E-21 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 SMART SM00319 33 150 4.9E-33 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 Gene3D G3DSA:1.10.287.950 301 658 2.7E-76 T 13-10-2018 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 SUPERFAMILY SSF103190 69 190 9.42E-11 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 Pfam PF02743 Cache domain 51 262 9.3E-26 T 13-10-2018 IPR033479 Double Cache domain 1 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 Gene3D G3DSA:3.30.450.20 60 271 2.2E-30 T 13-10-2018 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 SUPERFAMILY SSF58104 322 657 1.96E-74 T 13-10-2018 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 Pfam PF00672 HAMP domain 302 350 3.3E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 428 611 1.8E-59 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 SMART SM00283 383 658 5.3E-98 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 Gene3D G3DSA:3.30.450.20 72 182 2.2E-30 T 13-10-2018 RA13_06890 375f09c7d44e8353dfa1572db6e12fad 660 SMART SM00304 302 354 1.2E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_14815 4f9abb9510788330dd0ede277986201b 410 SUPERFAMILY SSF63411 226 401 6.83E-46 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RA13_14815 4f9abb9510788330dd0ede277986201b 410 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 33 56 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RA13_14815 4f9abb9510788330dd0ede277986201b 410 Gene3D G3DSA:3.30.830.10 1 212 4.2E-81 T 13-10-2018 RA13_14815 4f9abb9510788330dd0ede277986201b 410 SUPERFAMILY SSF63411 3 204 2.1E-62 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RA13_14815 4f9abb9510788330dd0ede277986201b 410 Gene3D G3DSA:3.30.830.10 218 409 4.7E-55 T 13-10-2018 RA13_14815 4f9abb9510788330dd0ede277986201b 410 Pfam PF00675 Insulinase (Peptidase family M16) 12 159 1.9E-50 T 13-10-2018 IPR011765 Peptidase M16, N-terminal RA13_14815 4f9abb9510788330dd0ede277986201b 410 Pfam PF05193 Peptidase M16 inactive domain 166 338 2.5E-38 T 13-10-2018 IPR007863 Peptidase M16, C-terminal RA13_04770 84c7ea19a0372991813f2e0747ecc932 407 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 93 246 5.1E-61 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RA13_04770 84c7ea19a0372991813f2e0747ecc932 407 Gene3D G3DSA:1.10.260.150 71 342 3.7E-102 T 13-10-2018 RA13_04770 84c7ea19a0372991813f2e0747ecc932 407 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 94 246 4.9E-52 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RA13_00945 f105496f48a1e308726b384fa3b0312c 217 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 Pfam PF05191 Adenylate kinase, active site lid 127 162 4.3E-17 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 Gene3D G3DSA:3.40.50.300 1 213 4.7E-85 T 13-10-2018 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 SUPERFAMILY SSF52540 1 213 4.37E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00945 f105496f48a1e308726b384fa3b0312c 217 PRINTS PR00094 Adenylate kinase signature 160 175 4.2E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 PRINTS PR00094 Adenylate kinase signature 4 17 4.2E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 PRINTS PR00094 Adenylate kinase signature 177 191 4.2E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 PRINTS PR00094 Adenylate kinase signature 32 46 4.2E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 PRINTS PR00094 Adenylate kinase signature 81 97 4.2E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 3.5E-82 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 Pfam PF00406 Adenylate kinase 5 190 3.0E-62 T 13-10-2018 RA13_00945 f105496f48a1e308726b384fa3b0312c 217 Hamap MF_00235 Adenylate kinase [adk]. 1 213 54.036 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RA13_03580 67e3381ba3a98ad940bd79fad81544a1 256 Pfam PF00535 Glycosyl transferase family 2 5 167 2.0E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_03580 67e3381ba3a98ad940bd79fad81544a1 256 Gene3D G3DSA:3.90.550.10 2 256 2.5E-98 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_03580 67e3381ba3a98ad940bd79fad81544a1 256 SUPERFAMILY SSF53448 2 234 1.13E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_03650 751e5486674c0d06eb8847f07ddc9181 281 Hamap MF_02119 Lipoyl-[GcvH]:protein N-lipoyltransferase [lipL]. 7 281 50.482 T 13-10-2018 IPR024897 Octanoyltransferase LipL GO:0009107|GO:0009249|GO:0016415 MetaCyc: PWY-6987 RA13_03650 751e5486674c0d06eb8847f07ddc9181 281 Gene3D G3DSA:3.30.930.10 5 281 1.5E-81 T 13-10-2018 RA13_03650 751e5486674c0d06eb8847f07ddc9181 281 SUPERFAMILY SSF55681 6 267 1.41E-67 T 13-10-2018 RA13_03650 751e5486674c0d06eb8847f07ddc9181 281 Pfam PF03099 Biotin/lipoate A/B protein ligase family 74 184 6.0E-18 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Pfam PF01584 CheW-like domain 545 671 5.2E-27 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Pfam PF07194 P2 response regulator binding domain 166 244 3.0E-26 T 13-10-2018 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SMART SM00387 397 540 3.2E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SUPERFAMILY SSF50341 539 671 1.44E-32 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Gene3D G3DSA:2.40.50.180 563 626 2.5E-39 T 13-10-2018 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Gene3D G3DSA:2.30.30.40 540 666 2.5E-39 T 13-10-2018 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Gene3D G3DSA:3.30.565.10 353 539 3.6E-59 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 500 518 9.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 537 9.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 456 9.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 494 9.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SUPERFAMILY SSF55052 162 244 2.35E-25 T 13-10-2018 IPR035891 CheY-binding domain of CheA RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Pfam PF01627 Hpt domain 5 98 2.9E-20 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SUPERFAMILY SSF47384 293 353 2.47E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SMART SM00260 532 671 9.2E-46 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Gene3D G3DSA:1.10.287.560 292 352 3.8E-20 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 400 539 1.3E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SMART SM00073 3 100 2.2E-40 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 292 351 2.7E-14 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SUPERFAMILY SSF55874 354 538 7.07E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Gene3D G3DSA:3.30.70.1110 162 245 7.6E-29 T 13-10-2018 IPR037052 Chemotaxis protein CheA, P2 response regulator-binding domain superfamily RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SUPERFAMILY SSF47226 2 112 2.22E-32 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 SMART SM01231 292 352 1.5E-19 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RA13_14965 eb6bd496e7284cf00a0d3820deaae0c7 672 Gene3D G3DSA:1.20.120.160 3 142 3.2E-38 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 RA13_03275 847678b75b04450d9c4ee83685813025 458 SUPERFAMILY SSF53187 39 432 4.04E-56 T 13-10-2018 RA13_03275 847678b75b04450d9c4ee83685813025 458 Pfam PF02225 PA domain 129 212 3.7E-18 T 13-10-2018 IPR003137 PA domain RA13_03275 847678b75b04450d9c4ee83685813025 458 Gene3D G3DSA:3.50.30.30 102 223 1.2E-102 T 13-10-2018 RA13_03275 847678b75b04450d9c4ee83685813025 458 Gene3D G3DSA:3.40.630.10 64 423 1.2E-102 T 13-10-2018 RA13_03275 847678b75b04450d9c4ee83685813025 458 SUPERFAMILY SSF52025 123 215 1.96E-20 T 13-10-2018 RA13_03275 847678b75b04450d9c4ee83685813025 458 Pfam PF04389 Peptidase family M28 232 426 2.4E-40 T 13-10-2018 IPR007484 Peptidase M28 RA13_00455 73d07da77084dc0101f895f72639edc3 313 Gene3D G3DSA:3.40.50.12580 106 300 2.6E-35 T 13-10-2018 RA13_00455 73d07da77084dc0101f895f72639edc3 313 SUPERFAMILY SSF53756 55 311 1.57E-16 T 13-10-2018 RA13_00455 73d07da77084dc0101f895f72639edc3 313 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 3 311 3.7E-58 T 13-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 Gene3D G3DSA:2.30.24.10 1 55 7.5E-19 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 Gene3D G3DSA:1.20.58.1950 222 273 1.5E-11 T 13-10-2018 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 SUPERFAMILY SSF63520 53 163 1.44E-29 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 Pfam PF03123 CAT RNA binding domain 2 55 6.3E-18 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 Pfam PF00874 PRD domain 72 159 2.7E-24 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 Pfam PF00874 PRD domain 178 270 3.0E-23 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 SUPERFAMILY SSF63520 169 272 4.58E-30 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 SMART SM01061 1 59 3.3E-19 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 Gene3D G3DSA:1.20.890.100 165 218 2.7E-18 T 13-10-2018 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 Gene3D G3DSA:1.10.1790.10 62 164 2.3E-33 T 13-10-2018 RA13_03495 425e218bc5d58cddcbded428fa80df90 276 SUPERFAMILY SSF50151 2 53 6.67E-15 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_05780 e5761aa454fd17dfda9cf272bead9336 316 Gene3D G3DSA:3.40.50.1980 163 316 3.9E-63 T 13-10-2018 RA13_05780 e5761aa454fd17dfda9cf272bead9336 316 Pfam PF01497 Periplasmic binding protein 81 292 1.5E-33 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_05780 e5761aa454fd17dfda9cf272bead9336 316 Gene3D G3DSA:3.40.50.1980 31 162 3.8E-24 T 13-10-2018 RA13_05780 e5761aa454fd17dfda9cf272bead9336 316 SUPERFAMILY SSF53807 41 308 3.34E-55 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 SMART SM00382 90 244 4.6E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 Pfam PF13481 AAA domain 72 222 6.2E-17 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 SUPERFAMILY SSF54211 255 455 4.17E-43 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 SUPERFAMILY SSF52540 67 291 3.09E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 Pfam PF13541 Subunit ChlI of Mg-chelatase 366 430 7.5E-9 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 Gene3D G3DSA:3.30.230.10 287 458 5.7E-20 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 452 5.8E-231 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 Hamap MF_01498 DNA repair protein RadA [radA]. 21 456 45.786 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 Gene3D G3DSA:3.40.50.300 64 285 3.1E-43 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 PRINTS PR01874 DNA repair protein radA signature 213 241 2.3E-94 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 PRINTS PR01874 DNA repair protein radA signature 10 34 2.3E-94 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 PRINTS PR01874 DNA repair protein radA signature 82 110 2.3E-94 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 PRINTS PR01874 DNA repair protein radA signature 124 141 2.3E-94 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 PRINTS PR01874 DNA repair protein radA signature 322 345 2.3E-94 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 PRINTS PR01874 DNA repair protein radA signature 248 274 2.3E-94 T 13-10-2018 RA13_01195 a2470478fd1aef4d1480035c7bf20856 459 PRINTS PR01874 DNA repair protein radA signature 174 198 2.3E-94 T 13-10-2018 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 SUPERFAMILY SSF52518 341 527 4.04E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 SUPERFAMILY SSF52518 4 325 5.89E-117 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 SUPERFAMILY SSF52922 535 666 8.9E-40 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 ProSitePatterns PS00801 Transketolase signature 1. 13 33 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 Pfam PF02780 Transketolase, C-terminal domain 548 657 3.3E-10 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 Gene3D G3DSA:3.40.50.970 331 537 1.9E-80 T 13-10-2018 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 Gene3D G3DSA:3.40.50.970 3 330 1.5E-125 T 13-10-2018 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 Gene3D G3DSA:3.40.50.920 540 666 1.0E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 1.9E-45 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 SMART SM00861 354 525 5.6E-72 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 338 6.6E-152 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_12785 6087aec459410f92eaeb1efb9610f4c2 667 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 665 0.0 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RA13_17125 4c5c04895348a51a0e15487bb2e92ffa 158 SUPERFAMILY SSF109854 4 136 2.75E-32 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_17125 4c5c04895348a51a0e15487bb2e92ffa 158 Pfam PF05163 DinB family 3 146 7.5E-27 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB RA13_17125 4c5c04895348a51a0e15487bb2e92ffa 158 Gene3D G3DSA:1.20.120.450 1 158 7.7E-46 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_21715 a9c934520133ae1505123ae65b052fbb 185 SUPERFAMILY SSF53697 4 184 1.98E-39 T 13-10-2018 RA13_21715 a9c934520133ae1505123ae65b052fbb 185 TIGRFAM TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase 8 185 3.3E-73 T 13-10-2018 IPR017552 3-hexulose-6-phosphate isomerase GO:0016853 RA13_21715 a9c934520133ae1505123ae65b052fbb 185 Gene3D G3DSA:3.40.50.10490 1 185 1.6E-56 T 13-10-2018 RA13_21715 a9c934520133ae1505123ae65b052fbb 185 Pfam PF01380 SIS domain 33 155 6.0E-19 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RA13_03755 1e4d4d35c61fc069aa37e58c619dcaae 380 SMART SM00028 221 254 7.8E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03755 1e4d4d35c61fc069aa37e58c619dcaae 380 SMART SM00028 181 214 50.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03755 1e4d4d35c61fc069aa37e58c619dcaae 380 SMART SM00028 140 173 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03755 1e4d4d35c61fc069aa37e58c619dcaae 380 SMART SM00028 261 294 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03755 1e4d4d35c61fc069aa37e58c619dcaae 380 Pfam PF13424 Tetratricopeptide repeat 222 289 6.3E-8 T 13-10-2018 RA13_03755 1e4d4d35c61fc069aa37e58c619dcaae 380 SUPERFAMILY SSF48452 105 303 1.12E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_03755 1e4d4d35c61fc069aa37e58c619dcaae 380 Gene3D G3DSA:1.25.40.10 2 380 1.9E-148 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_12110 a0086d3725b985f437ed566dee33b690 410 Pfam PF10651 Domain of unknown function (DUF2479) 8 145 3.7E-31 T 13-10-2018 IPR018913 Domain of unknown function DUF2479 RA13_12110 a0086d3725b985f437ed566dee33b690 410 Gene3D G3DSA:2.60.40.3350 7 124 6.0E-6 T 13-10-2018 RA13_18720 19ce4980b2d52918208999846c8e92f7 443 Gene3D G3DSA:3.90.1150.10 14 440 2.1E-151 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_18720 19ce4980b2d52918208999846c8e92f7 443 Gene3D G3DSA:3.40.640.10 63 333 2.1E-151 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_18720 19ce4980b2d52918208999846c8e92f7 443 Pfam PF00202 Aminotransferase class-III 29 438 1.9E-109 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_18720 19ce4980b2d52918208999846c8e92f7 443 SUPERFAMILY SSF53383 18 440 4.76E-124 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_18720 19ce4980b2d52918208999846c8e92f7 443 PIRSF PIRSF000521 26 443 4.4E-36 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_18720 19ce4980b2d52918208999846c8e92f7 443 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_12685 8933ba4220cc5573c98897b24633fb79 135 SMART SM00881 12 105 8.1E-16 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RA13_12685 8933ba4220cc5573c98897b24633fb79 135 Pfam PF13380 CoA binding domain 17 131 2.4E-35 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RA13_12685 8933ba4220cc5573c98897b24633fb79 135 SUPERFAMILY SSF51735 7 133 5.15E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_12685 8933ba4220cc5573c98897b24633fb79 135 Gene3D G3DSA:3.40.50.720 1 135 6.5E-38 T 13-10-2018 RA13_00155 2f9e17c10176da0420735e746aa808b0 214 Gene3D G3DSA:3.40.50.1820 34 214 9.8E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_00155 2f9e17c10176da0420735e746aa808b0 214 Pfam PF01674 Lipase (class 2) 37 131 1.4E-12 T 13-10-2018 IPR002918 Lipase EstA/Esterase EstB GO:0016787 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 RA13_00155 2f9e17c10176da0420735e746aa808b0 214 SUPERFAMILY SSF53474 37 143 1.77E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_08910 b257af3b54193323762fd057c895596d 201 SUPERFAMILY SSF50249 2 60 3.83E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_08910 b257af3b54193323762fd057c895596d 201 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 200 4.5E-67 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RA13_08910 b257af3b54193323762fd057c895596d 201 SUPERFAMILY SSF47781 62 135 4.89E-20 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_08910 b257af3b54193323762fd057c895596d 201 Pfam PF14520 Helix-hairpin-helix domain 69 126 4.0E-14 T 13-10-2018 RA13_08910 b257af3b54193323762fd057c895596d 201 SMART SM00278 70 89 0.8 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_08910 b257af3b54193323762fd057c895596d 201 SMART SM00278 105 124 0.7 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_08910 b257af3b54193323762fd057c895596d 201 Gene3D G3DSA:2.40.50.140 1 62 1.2E-16 T 13-10-2018 RA13_08910 b257af3b54193323762fd057c895596d 201 Pfam PF01330 RuvA N terminal domain 2 59 3.8E-19 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RA13_08910 b257af3b54193323762fd057c895596d 201 SUPERFAMILY SSF46929 154 199 1.11E-8 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily RA13_08910 b257af3b54193323762fd057c895596d 201 Gene3D G3DSA:1.10.150.20 63 133 6.1E-24 T 13-10-2018 RA13_08910 b257af3b54193323762fd057c895596d 201 Gene3D G3DSA:1.10.8.10 151 199 5.1E-8 T 13-10-2018 RA13_08910 b257af3b54193323762fd057c895596d 201 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 200 28.844 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RA13_08910 b257af3b54193323762fd057c895596d 201 Pfam PF07499 RuvA, C-terminal domain 155 199 1.7E-12 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RA13_02700 1057a5c806dda3c4cd0e587fb3d0f630 222 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 1 215 35.238 T 13-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 RA13_02700 1057a5c806dda3c4cd0e587fb3d0f630 222 PIRSF PIRSF001357 1 221 6.3E-77 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RA13_02700 1057a5c806dda3c4cd0e587fb3d0f630 222 Gene3D G3DSA:3.20.20.70 1 219 8.2E-96 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_02700 1057a5c806dda3c4cd0e587fb3d0f630 222 SMART SM01133 1 213 9.7E-103 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RA13_02700 1057a5c806dda3c4cd0e587fb3d0f630 222 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 3 211 7.5E-96 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RA13_02700 1057a5c806dda3c4cd0e587fb3d0f630 222 Pfam PF01791 DeoC/LacD family aldolase 8 209 7.2E-23 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 RA13_02700 1057a5c806dda3c4cd0e587fb3d0f630 222 SUPERFAMILY SSF51569 3 212 8.58E-81 T 13-10-2018 RA13_11460 fc19fa37dfea5586d5706cf19b9a4612 132 SUPERFAMILY SSF53098 3 123 1.52E-27 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_11460 fc19fa37dfea5586d5706cf19b9a4612 132 Pfam PF13456 Reverse transcriptase-like 8 125 1.7E-17 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RA13_11460 fc19fa37dfea5586d5706cf19b9a4612 132 Gene3D G3DSA:3.30.420.10 3 131 7.1E-28 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 SUPERFAMILY SSF50465 304 396 4.03E-35 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 PRINTS PR00315 GTP-binding elongation factor signature 79 89 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 PRINTS PR00315 GTP-binding elongation factor signature 59 67 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 PRINTS PR00315 GTP-binding elongation factor signature 132 141 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 PRINTS PR00315 GTP-binding elongation factor signature 95 106 3.1E-25 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 Gene3D G3DSA:2.40.30.10 207 336 1.0E-54 T 13-10-2018 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 Gene3D G3DSA:3.40.50.300 1 204 4.3E-70 T 13-10-2018 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 147 4.8E-16 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 SUPERFAMILY SSF52540 6 220 5.12E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.16 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 202 1.9E-60 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 SUPERFAMILY SSF50447 204 303 1.47E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 1.8E-233 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 Gene3D G3DSA:2.40.30.10 340 394 4.2E-26 T 13-10-2018 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 1.3E-32 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 Pfam PF03144 Elongation factor Tu domain 2 226 295 5.6E-19 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RA13_01065 65f05c18f6a76c6dc6baab4d28a11650 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 52 67 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Gene3D G3DSA:3.50.50.60 110 244 2.7E-89 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 770 8.3E-303 T 13-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Gene3D G3DSA:1.10.10.1100 412 465 2.2E-9 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.2E-23 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 8.2E-23 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 8.2E-23 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 8.2E-23 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 8.2E-23 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 1.0E-12 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 1.0E-12 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.0E-12 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 1.0E-12 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 SUPERFAMILY SSF55124 493 603 2.62E-18 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 SUPERFAMILY SSF56014 627 742 9.55E-17 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Pfam PF04324 BFD-like [2Fe-2S] binding domain 412 461 3.7E-13 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Pfam PF04324 BFD-like [2Fe-2S] binding domain 478 526 8.8E-11 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 634 740 1.5E-8 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 PIRSF PIRSF037149 1 771 2.1E-265 T 13-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Gene3D G3DSA:3.30.413.10 607 760 1.2E-14 T 13-10-2018 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 SUPERFAMILY SSF51905 146 308 2.76E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 281 1.2E-57 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Gene3D G3DSA:3.30.390.30 316 392 5.0E-5 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 SUPERFAMILY SSF51905 3 191 4.9E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Gene3D G3DSA:3.50.50.60 7 280 2.7E-89 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21795 c8a73839e79f7d002deb96b07d7adb4b 772 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 541 604 2.2E-10 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 Pfam PF13361 UvrD-like helicase C-terminal domain 280 621 4.0E-74 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 Gene3D G3DSA:1.10.10.160 116 190 1.6E-110 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 8 737 0.0 T 13-10-2018 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 SUPERFAMILY SSF52540 3 648 6.23E-186 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 Pfam PF00580 UvrD/REP helicase N-terminal domain 12 275 1.2E-82 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 Gene3D G3DSA:3.40.50.300 283 639 1.6E-132 T 13-10-2018 RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 Gene3D G3DSA:1.10.486.10 386 552 1.6E-132 T 13-10-2018 RA13_20080 79f0351e8f51414b5f1945ec9f8bb5cd 739 Gene3D G3DSA:3.40.50.300 12 277 1.6E-110 T 13-10-2018 RA13_03595 adf1f84b5c25065fdf5fe7b8ca1d6c95 245 SUPERFAMILY SSF53448 2 234 1.91E-67 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_03595 adf1f84b5c25065fdf5fe7b8ca1d6c95 245 Pfam PF00483 Nucleotidyl transferase 2 232 4.1E-51 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RA13_03595 adf1f84b5c25065fdf5fe7b8ca1d6c95 245 Gene3D G3DSA:3.90.550.10 1 244 4.7E-67 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 63 124 4.3E-19 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 Gene3D G3DSA:1.10.10.10 1 73 1.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 Gene3D G3DSA:1.10.60.10 74 142 1.4E-35 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 1 60 8.0E-27 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 SUPERFAMILY SSF46785 3 62 2.69E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 Hamap MF_00732 Transcriptional regulator MntR [mntR]. 1 139 45.303 T 13-10-2018 IPR022897 HTH-type transcription regulator MntR RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 SUPERFAMILY SSF47979 63 133 1.45E-19 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 RA13_10070 b1b68357acc6dc1c3b8f4aaea30eeb7d 142 SMART SM00529 24 123 1.9E-46 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 RA13_05040 a223411ea8ce2f5e73065970827ae9e5 238 Pfam PF13529 Peptidase_C39 like family 50 210 4.8E-44 T 13-10-2018 IPR039564 Peptidase C39-like RA13_05040 a223411ea8ce2f5e73065970827ae9e5 238 Gene3D G3DSA:3.90.70.10 47 238 4.7E-69 T 13-10-2018 RA13_05040 a223411ea8ce2f5e73065970827ae9e5 238 PIRSF PIRSF032442 19 238 2.1E-76 T 13-10-2018 IPR016997 Uncharacterised conserved protein UCP032442 RA13_08960 748414c6bae3fb6497950870142324c6 740 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 476 719 2.0E-67 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RA13_08960 748414c6bae3fb6497950870142324c6 740 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 33 405 1.5E-117 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RA13_08960 748414c6bae3fb6497950870142324c6 740 Pfam PF07549 SecD/SecF GG Motif 469 493 2.7E-6 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RA13_08960 748414c6bae3fb6497950870142324c6 740 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 447 730 25.032 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RA13_08960 748414c6bae3fb6497950870142324c6 740 SUPERFAMILY SSF82866 540 732 1.7E-35 T 13-10-2018 RA13_08960 748414c6bae3fb6497950870142324c6 740 Gene3D G3DSA:1.20.1640.10 249 421 3.1E-17 T 13-10-2018 RA13_08960 748414c6bae3fb6497950870142324c6 740 Gene3D G3DSA:3.30.70.3400 33 121 3.2E-21 T 13-10-2018 RA13_08960 748414c6bae3fb6497950870142324c6 740 Pfam PF02355 Protein export membrane protein 241 408 1.8E-16 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 Pfam PF02355 Protein export membrane protein 551 727 7.7E-66 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 PRINTS PR01755 Bacterial translocase SecF protein signature 584 598 5.3E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 PRINTS PR01755 Bacterial translocase SecF protein signature 632 650 5.3E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 PRINTS PR01755 Bacterial translocase SecF protein signature 474 489 5.3E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 PRINTS PR01755 Bacterial translocase SecF protein signature 667 682 5.3E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 SUPERFAMILY SSF82866 215 413 1.31E-42 T 13-10-2018 RA13_08960 748414c6bae3fb6497950870142324c6 740 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 179 398 1.0E-59 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 554 716 1.8E-49 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RA13_08960 748414c6bae3fb6497950870142324c6 740 Gene3D G3DSA:1.20.1640.10 425 473 3.1E-17 T 13-10-2018 RA13_08960 748414c6bae3fb6497950870142324c6 740 Gene3D G3DSA:1.20.1640.10 542 737 8.1E-8 T 13-10-2018 RA13_08960 748414c6bae3fb6497950870142324c6 740 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 420 34.172 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RA13_08895 1c8365457f064585e4b3900287755c18 216 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 33 66 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RA13_08895 1c8365457f064585e4b3900287755c18 216 SUPERFAMILY SSF56112 31 168 2.14E-18 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_08895 1c8365457f064585e4b3900287755c18 216 Gene3D G3DSA:1.10.510.10 5 180 7.7E-8 T 13-10-2018 RA13_00605 7bbb28006fa76f80bf156628293bf5aa 1142 SMART SM00382 194 316 0.0043 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_00605 7bbb28006fa76f80bf156628293bf5aa 1142 SUPERFAMILY SSF52540 179 395 1.42E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00605 7bbb28006fa76f80bf156628293bf5aa 1142 Pfam PF04471 Restriction endonuclease 10 63 4.4E-6 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RA13_00605 7bbb28006fa76f80bf156628293bf5aa 1142 Gene3D G3DSA:3.40.50.300 159 315 6.4E-8 T 13-10-2018 RA13_00605 7bbb28006fa76f80bf156628293bf5aa 1142 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 198 293 1.0E-4 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_00165 3b02a8f22b26e924bf81093a3d26d3f3 188 Gene3D G3DSA:1.10.357.10 1 188 1.8E-59 T 13-10-2018 RA13_00165 3b02a8f22b26e924bf81093a3d26d3f3 188 SUPERFAMILY SSF46689 5 71 4.93E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_00165 3b02a8f22b26e924bf81093a3d26d3f3 188 SUPERFAMILY SSF48498 78 187 1.28E-21 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_00165 3b02a8f22b26e924bf81093a3d26d3f3 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_00165 3b02a8f22b26e924bf81093a3d26d3f3 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_00165 3b02a8f22b26e924bf81093a3d26d3f3 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 57 5.9E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_17845 fa0c36be495cb9e05b77d48d39ff2657 199 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 9 192 1.8E-89 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_17845 fa0c36be495cb9e05b77d48d39ff2657 199 Pfam PF01583 Adenylylsulphate kinase 26 179 1.3E-73 T 13-10-2018 RA13_17845 fa0c36be495cb9e05b77d48d39ff2657 199 SUPERFAMILY SSF52540 22 195 2.66E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17845 fa0c36be495cb9e05b77d48d39ff2657 199 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 25 197 39.169 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_17845 fa0c36be495cb9e05b77d48d39ff2657 199 Gene3D G3DSA:3.40.50.300 3 199 3.4E-79 T 13-10-2018 RA13_13980 3618ddb0965cdddcab563fd1e798a1cc 74 SUPERFAMILY SSF47413 11 69 2.22E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_13980 3618ddb0965cdddcab563fd1e798a1cc 74 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 12 70 4.2E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_13980 3618ddb0965cdddcab563fd1e798a1cc 74 Gene3D G3DSA:1.10.260.40 6 73 8.5E-12 T 13-10-2018 RA13_13980 3618ddb0965cdddcab563fd1e798a1cc 74 SMART SM00530 10 66 4.1E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_19635 4d4ce0cd0ef5cc3ef9766287f49d4f57 115 Pfam PF11181 Heat induced stress protein YflT 5 104 4.4E-31 T 13-10-2018 IPR025889 General stress protein 17M-like domain RA13_08190 8fe1e2eba56b8d8106e05bc4577419c9 126 SUPERFAMILY SSF56276 2 113 1.67E-40 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 RA13_08190 8fe1e2eba56b8d8106e05bc4577419c9 126 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 3 112 3.0E-41 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 RA13_08190 8fe1e2eba56b8d8106e05bc4577419c9 126 Pfam PF02675 S-adenosylmethionine decarboxylase 7 112 7.5E-37 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 RA13_08190 8fe1e2eba56b8d8106e05bc4577419c9 126 Gene3D G3DSA:3.30.360.110 1 62 5.6E-26 T 13-10-2018 RA13_08190 8fe1e2eba56b8d8106e05bc4577419c9 126 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 116 31.789 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 RA13_08190 8fe1e2eba56b8d8106e05bc4577419c9 126 Gene3D G3DSA:3.30.160.750 63 125 3.5E-18 T 13-10-2018 RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 Gene3D G3DSA:3.30.230.10 1 158 6.5E-61 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 Pfam PF08544 GHMP kinases C terminal 197 270 5.7E-9 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 SUPERFAMILY SSF55060 161 281 1.22E-30 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 PIRSF PIRSF010376 1 288 3.8E-99 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 1 287 8.9E-123 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 Pfam PF00288 GHMP kinases N terminal domain 87 144 6.7E-13 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 SUPERFAMILY SSF54211 2 157 1.59E-47 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 279 35.67 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RA13_01485 ee585a4cfe1e6d015d63b41082403152 289 Gene3D G3DSA:3.30.70.890 162 287 3.6E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RA13_16050 38cc612c1b414b0045735ab0523645cf 174 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 9 139 6.1E-30 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 RA13_16050 38cc612c1b414b0045735ab0523645cf 174 Gene3D G3DSA:3.40.50.300 7 173 4.1E-58 T 13-10-2018 RA13_16050 38cc612c1b414b0045735ab0523645cf 174 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 9 164 3.1E-27 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 RA13_16050 38cc612c1b414b0045735ab0523645cf 174 SUPERFAMILY SSF52540 8 146 2.23E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19595 81b559328d33477a6de56de7e26859ee 265 Gene3D G3DSA:3.60.15.10 13 262 2.6E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_19595 81b559328d33477a6de56de7e26859ee 265 SMART SM00849 30 241 2.7E-36 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_19595 81b559328d33477a6de56de7e26859ee 265 Pfam PF00753 Metallo-beta-lactamase superfamily 27 241 1.1E-35 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_19595 81b559328d33477a6de56de7e26859ee 265 SUPERFAMILY SSF56281 17 264 6.94E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 SMART SM00840 353 420 4.7E-18 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 SUPERFAMILY SSF52374 4 314 1.74E-104 T 13-10-2018 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 SUPERFAMILY SSF47323 340 464 1.9E-35 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 465 39.055 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 Gene3D G3DSA:3.40.50.620 1 305 5.1E-135 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 313 4.0E-140 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 463 7.0E-199 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 Gene3D G3DSA:1.20.120.640 306 464 8.2E-36 T 13-10-2018 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 1.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 1.1E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RA13_01160 2791cde8293bbfbc296bf94bee158e61 466 Pfam PF09190 DALR domain 353 411 2.7E-17 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 Gene3D G3DSA:3.20.20.70 93 357 1.1E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 TIGRFAM TIGR01801 CM_A: chorismate mutase 1 101 3.9E-50 T 13-10-2018 IPR010954 Chorismate mutase, Firmicutes/Deinococcus KEGG: 00400+2.5.1.54+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6164|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 Pfam PF01817 Chorismate mutase type II 10 87 2.1E-17 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 Pfam PF00793 DAHP synthetase I family 111 354 2.5E-84 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 Gene3D G3DSA:1.20.59.10 8 92 2.3E-27 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 95 351 4.3E-121 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 SUPERFAMILY SSF51569 26 353 5.95E-103 T 13-10-2018 RA13_07800 2b0a08fb83b7d2197e8a8a2e6540766d 358 SMART SM00830 10 89 4.3E-20 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_04960 bd9154068b07204a48f65d4098691266 957 Gene3D G3DSA:1.10.8.280 286 403 5.7E-256 T 13-10-2018 RA13_04960 bd9154068b07204a48f65d4098691266 957 Gene3D G3DSA:1.20.1580.10 691 828 1.4E-144 T 13-10-2018 RA13_04960 bd9154068b07204a48f65d4098691266 957 Pfam PF00005 ABC transporter 622 858 3.0E-9 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_04960 bd9154068b07204a48f65d4098691266 957 Gene3D G3DSA:3.40.50.300 612 934 1.4E-144 T 13-10-2018 RA13_04960 bd9154068b07204a48f65d4098691266 957 SMART SM00382 631 906 8.9E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04960 bd9154068b07204a48f65d4098691266 957 Gene3D G3DSA:3.40.50.300 8 594 5.7E-256 T 13-10-2018 RA13_04960 bd9154068b07204a48f65d4098691266 957 SUPERFAMILY SSF52540 6 569 2.4E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04960 bd9154068b07204a48f65d4098691266 957 SUPERFAMILY SSF52540 613 912 2.93E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04960 bd9154068b07204a48f65d4098691266 957 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_04960 bd9154068b07204a48f65d4098691266 957 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 922 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RA13_04960 bd9154068b07204a48f65d4098691266 957 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 938 23.735 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RA13_04960 bd9154068b07204a48f65d4098691266 957 Gene3D G3DSA:1.20.1580.10 92 492 5.7E-256 T 13-10-2018 RA13_04960 bd9154068b07204a48f65d4098691266 957 Gene3D G3DSA:3.30.190.20 132 241 5.7E-256 T 13-10-2018 RA13_04960 bd9154068b07204a48f65d4098691266 957 ProSitePatterns PS00211 ABC transporters family signature. 828 842 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 SUPERFAMILY SSF54106 27 70 1.96E-10 T 13-10-2018 RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 SMART SM00257 79 122 2.3E-18 T 13-10-2018 IPR018392 LysM domain RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 SMART SM00257 27 70 4.6E-15 T 13-10-2018 IPR018392 LysM domain RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 SUPERFAMILY SSF50685 223 266 3.84E-8 T 13-10-2018 IPR036908 RlpA-like domain superfamily RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 SUPERFAMILY SSF54106 79 121 3.79E-13 T 13-10-2018 RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 Pfam PF06725 3D domain 221 282 1.9E-21 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 Pfam PF01476 LysM domain 28 69 9.3E-13 T 13-10-2018 IPR018392 LysM domain RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 Pfam PF01476 LysM domain 80 121 2.2E-16 T 13-10-2018 IPR018392 LysM domain RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 Gene3D G3DSA:2.40.40.10 128 277 1.2E-5 T 13-10-2018 IPR036908 RlpA-like domain superfamily RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 Gene3D G3DSA:3.10.350.10 77 127 1.7E-20 T 13-10-2018 IPR036779 LysM domain superfamily RA13_12280 04b6ae6d979b3a6255712bf6b56d101f 282 Gene3D G3DSA:3.10.350.10 24 76 9.4E-17 T 13-10-2018 IPR036779 LysM domain superfamily RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 Pfam PF01676 Metalloenzyme superfamily 8 381 1.1E-46 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 SUPERFAMILY SSF143856 103 219 6.8E-52 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 TIGRFAM TIGR01696 deoB: phosphopentomutase 8 388 4.4E-217 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 Gene3D G3DSA:3.30.70.1250 101 219 4.6E-177 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 Hamap MF_00740 Phosphopentomutase [deoB]. 6 390 55.438 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 PIRSF PIRSF001491 5 394 1.6E-168 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 Gene3D G3DSA:3.40.720.10 7 390 4.6E-177 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_10605 790d1975630bb977a7a007103aa2a0f8 394 SUPERFAMILY SSF53649 6 393 8.24E-79 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_01820 0db5b8a64a2540e8561b1c1832581711 261 PRINTS PR00701 60kDa inner membrane protein signature 126 149 2.3E-15 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RA13_01820 0db5b8a64a2540e8561b1c1832581711 261 PRINTS PR00701 60kDa inner membrane protein signature 210 233 2.3E-15 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RA13_01820 0db5b8a64a2540e8561b1c1832581711 261 Pfam PF02096 60Kd inner membrane protein 61 243 1.4E-61 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RA13_01820 0db5b8a64a2540e8561b1c1832581711 261 PRINTS PR01900 YidC translocation/secretion protein signature 199 223 5.7E-6 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RA13_01820 0db5b8a64a2540e8561b1c1832581711 261 PRINTS PR01900 YidC translocation/secretion protein signature 177 192 5.7E-6 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RA13_01820 0db5b8a64a2540e8561b1c1832581711 261 Hamap MF_01811 Membrane protein insertase YidC [yidC]. 4 248 32.45 T 13-10-2018 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes GO:0016021|GO:0032977 RA13_01820 0db5b8a64a2540e8561b1c1832581711 261 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 60 243 7.6E-68 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 Gene3D G3DSA:3.40.50.2300 157 283 1.3E-64 T 13-10-2018 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 Gene3D G3DSA:3.40.50.2300 63 304 1.3E-64 T 13-10-2018 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 SUPERFAMILY SSF53822 59 318 3.93E-65 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 9.0E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 9.0E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 Pfam PF13377 Periplasmic binding protein-like domain 166 324 4.4E-24 T 13-10-2018 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 SUPERFAMILY SSF47413 2 61 1.73E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 2.2E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 SMART SM00354 2 72 2.8E-33 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_13190 a08fdb8a1bb579c282551156b00746fe 324 Gene3D G3DSA:1.10.260.40 1 60 4.2E-23 T 13-10-2018 RA13_01435 bbaa565d11c00d85214273752efbac71 178 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 9 51 1.1E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_01435 bbaa565d11c00d85214273752efbac71 178 SMART SM00966 8 52 1.1E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_01435 bbaa565d11c00d85214273752efbac71 178 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 49 1.2E-15 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_01435 bbaa565d11c00d85214273752efbac71 178 SUPERFAMILY SSF89447 1 52 9.03E-15 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily RA13_01435 bbaa565d11c00d85214273752efbac71 178 PIRSF PIRSF026579 1 178 7.5E-96 T 13-10-2018 IPR014213 Sporulation stage V, protein T RA13_01435 bbaa565d11c00d85214273752efbac71 178 Gene3D G3DSA:2.10.260.10 1 49 3.8E-24 T 13-10-2018 RA13_01435 bbaa565d11c00d85214273752efbac71 178 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 54 177 1.4E-44 T 13-10-2018 IPR039472 Sporulation stage V protein T, GAF domain RA13_01435 bbaa565d11c00d85214273752efbac71 178 TIGRFAM TIGR02851 spore_V_T: stage V sporulation protein T 2 177 6.5E-89 T 13-10-2018 IPR014213 Sporulation stage V, protein T RA13_01435 bbaa565d11c00d85214273752efbac71 178 Gene3D G3DSA:3.30.450.40 56 178 6.9E-47 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 Gene3D G3DSA:3.30.160.20 175 242 1.8E-21 T 13-10-2018 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 SMART SM00535 35 170 1.7E-61 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 Pfam PF00035 Double-stranded RNA binding motif 177 242 3.9E-16 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 SUPERFAMILY SSF69065 17 177 1.55E-52 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 SUPERFAMILY SSF54768 132 244 2.83E-23 T 13-10-2018 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 Gene3D G3DSA:1.10.1520.10 19 165 1.3E-47 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 SMART SM00358 176 243 8.0E-23 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 Hamap MF_00104 Ribonuclease 3 [rnc]. 23 239 31.733 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 23 242 9.1E-81 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 Pfam PF14622 Ribonuclease-III-like 33 163 3.1E-36 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RA13_15215 4a125b8fbd2ce5c82fb043a266c288de 249 ProSitePatterns PS00517 Ribonuclease III family signature. 59 67 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RA13_16780 4ac452c8b783783f86f458cb880efa44 313 Gene3D G3DSA:3.40.50.10740 1 160 3.6E-55 T 13-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal RA13_16780 4ac452c8b783783f86f458cb880efa44 313 Gene3D G3DSA:3.50.30.60 168 301 4.6E-43 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RA13_16780 4ac452c8b783783f86f458cb880efa44 313 PIRSF PIRSF028757 2 306 1.1E-91 T 13-10-2018 IPR003507 Peptidase family S66 RA13_16780 4ac452c8b783783f86f458cb880efa44 313 SUPERFAMILY SSF52317 3 162 5.49E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_16780 4ac452c8b783783f86f458cb880efa44 313 Pfam PF02016 LD-carboxypeptidase 14 292 5.3E-83 T 13-10-2018 IPR003507 Peptidase family S66 RA13_16780 4ac452c8b783783f86f458cb880efa44 313 SUPERFAMILY SSF141986 142 299 2.09E-42 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily RA13_08340 e82da41326aedcc27849f5d416973432 392 SUPERFAMILY SSF56796 23 382 2.36E-57 T 13-10-2018 RA13_08340 e82da41326aedcc27849f5d416973432 392 Pfam PF13685 Iron-containing alcohol dehydrogenase 29 295 3.3E-70 T 13-10-2018 IPR032837 Glycerol-1-phosphate dehydrogenase KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 RA13_08340 e82da41326aedcc27849f5d416973432 392 Gene3D G3DSA:1.20.1090.10 179 390 2.0E-58 T 13-10-2018 RA13_08340 e82da41326aedcc27849f5d416973432 392 Gene3D G3DSA:3.40.50.1970 20 178 2.9E-33 T 13-10-2018 RA13_08340 e82da41326aedcc27849f5d416973432 392 Hamap MF_00497_B Glycerol-1-phosphate dehydrogenase [NAD(P)+] [egsA]. 3 384 54.333 T 13-10-2018 IPR023003 Glycerol-1-phosphate dehydrogenase, bacteria GO:0050492|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 RA13_06715 a0284e34c04fe656d19654beba26494e 359 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 40 349 3.3E-100 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 RA13_06715 a0284e34c04fe656d19654beba26494e 359 Gene3D G3DSA:3.40.50.2300 146 343 1.4E-108 T 13-10-2018 RA13_06715 a0284e34c04fe656d19654beba26494e 359 Gene3D G3DSA:3.40.50.2300 42 312 1.4E-108 T 13-10-2018 RA13_06715 a0284e34c04fe656d19654beba26494e 359 SUPERFAMILY SSF53822 53 270 1.31E-13 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_12465 464bc31be590e936e42089636af5659d 300 Pfam PF03466 LysR substrate binding domain 89 291 1.1E-46 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_12465 464bc31be590e936e42089636af5659d 300 SUPERFAMILY SSF46785 1 84 1.23E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_12465 464bc31be590e936e42089636af5659d 300 Gene3D G3DSA:3.40.190.290 90 297 8.4E-53 T 13-10-2018 RA13_12465 464bc31be590e936e42089636af5659d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12465 464bc31be590e936e42089636af5659d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12465 464bc31be590e936e42089636af5659d 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12465 464bc31be590e936e42089636af5659d 300 SUPERFAMILY SSF53850 88 296 7.06E-42 T 13-10-2018 RA13_12465 464bc31be590e936e42089636af5659d 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.9E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12465 464bc31be590e936e42089636af5659d 300 Gene3D G3DSA:1.10.10.10 1 84 5.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15335 32960fe8838f162e019dd385665cd8f2 67 Pfam PF01192 RNA polymerase Rpb6 9 59 3.3E-11 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RA13_15335 32960fe8838f162e019dd385665cd8f2 67 SMART SM01409 8 61 6.0E-11 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RA13_15335 32960fe8838f162e019dd385665cd8f2 67 Gene3D G3DSA:3.90.940.10 1 67 3.1E-15 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RA13_15335 32960fe8838f162e019dd385665cd8f2 67 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 6.7E-28 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_15335 32960fe8838f162e019dd385665cd8f2 67 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 13.569 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_15335 32960fe8838f162e019dd385665cd8f2 67 SUPERFAMILY SSF63562 1 65 1.31E-20 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 Gene3D G3DSA:3.40.50.720 83 215 1.4E-49 T 13-10-2018 RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 SUPERFAMILY SSF51735 84 207 1.02E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 SUPERFAMILY SSF46785 9 80 3.48E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 Gene3D G3DSA:1.10.10.10 1 82 3.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 Pfam PF02629 CoA binding domain 83 178 9.2E-30 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 3 209 38.397 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 Pfam PF06971 Putative DNA-binding protein N-terminus 7 55 1.4E-19 T 13-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 RA13_20420 db4a9a0a4aae5578d57386aa186517fc 215 SMART SM00881 81 180 1.5E-18 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RA13_15920 811cd625b62f2004c55397e42ddd54f7 257 ProSitePatterns PS01229 Hypothetical cof family signature 2. 204 226 - T 13-10-2018 RA13_15920 811cd625b62f2004c55397e42ddd54f7 257 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 249 1.4E-59 T 13-10-2018 RA13_15920 811cd625b62f2004c55397e42ddd54f7 257 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 249 3.3E-61 T 13-10-2018 IPR000150 Cof family GO:0016787 RA13_15920 811cd625b62f2004c55397e42ddd54f7 257 Gene3D G3DSA:3.30.1240.10 81 179 1.4E-82 T 13-10-2018 RA13_15920 811cd625b62f2004c55397e42ddd54f7 257 Gene3D G3DSA:3.40.50.1000 4 247 1.4E-82 T 13-10-2018 IPR023214 HAD superfamily RA13_15920 811cd625b62f2004c55397e42ddd54f7 257 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 223 3.2E-22 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RA13_15920 811cd625b62f2004c55397e42ddd54f7 257 SUPERFAMILY SSF56784 1 254 3.56E-69 T 13-10-2018 IPR036412 HAD-like superfamily RA13_05525 69ced9345313e4edd0c0bb30dbfaeff8 154 Gene3D G3DSA:3.40.630.30 2 154 1.4E-46 T 13-10-2018 RA13_05525 69ced9345313e4edd0c0bb30dbfaeff8 154 Pfam PF00583 Acetyltransferase (GNAT) family 30 119 2.0E-14 T 13-10-2018 IPR000182 GNAT domain RA13_05525 69ced9345313e4edd0c0bb30dbfaeff8 154 SUPERFAMILY SSF55729 15 153 5.06E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 TIGRFAM TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor 5 228 7.2E-115 T 13-10-2018 IPR014209 RNA polymerase sigma-K type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 197 223 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 SUPERFAMILY SSF88659 139 225 1.57E-18 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 PIRSF PIRSF000770 1 241 1.6E-95 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 SUPERFAMILY SSF88946 10 120 2.75E-33 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 Pfam PF04542 Sigma-70 region 2 54 123 3.1E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 223 6.2E-31 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 PRINTS PR00046 Major sigma-70 factor signature 197 212 7.2E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 PRINTS PR00046 Major sigma-70 factor signature 78 91 7.2E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 PRINTS PR00046 Major sigma-70 factor signature 176 188 7.2E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 PRINTS PR00046 Major sigma-70 factor signature 212 223 7.2E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 Gene3D G3DSA:1.20.120.1810 21 123 1.7E-23 T 13-10-2018 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 Pfam PF04545 Sigma-70, region 4 173 223 1.5E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_09430 5e82d1dcb43b4e471d85e086423369d3 241 Gene3D G3DSA:1.10.10.10 154 234 2.8E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 9 44 3.3E-13 T 13-10-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 Gene3D G3DSA:3.40.50.12440 48 1228 0.0 T 13-10-2018 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 7 1227 0.0 T 13-10-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 52 70 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 Pfam PF01568 Molydopterin dinucleotide binding domain 1080 1194 1.4E-20 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 1117 1144 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 SUPERFAMILY SSF53706 8 1065 0.0 T 13-10-2018 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 Pfam PF00384 Molybdopterin oxidoreductase 112 824 6.1E-186 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 SMART SM00926 47 109 6.0E-7 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 SUPERFAMILY SSF50692 1074 1226 4.52E-44 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RA13_03820 c8d3df547eb2202de521a304b4ca4e8b 1228 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 768 785 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RA13_04990 ca8a84cc0fc1991d7811b5e2474be83a 1299 SUPERFAMILY SSF56300 928 1133 6.64E-31 T 13-10-2018 RA13_04990 ca8a84cc0fc1991d7811b5e2474be83a 1299 Pfam PF00149 Calcineurin-like phosphoesterase 931 1127 3.4E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_04990 ca8a84cc0fc1991d7811b5e2474be83a 1299 Gene3D G3DSA:3.60.21.10 931 1161 1.3E-17 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_04990 ca8a84cc0fc1991d7811b5e2474be83a 1299 Pfam PF00932 Lamin Tail Domain 159 289 7.2E-8 T 13-10-2018 IPR001322 Lamin tail domain RA13_04990 ca8a84cc0fc1991d7811b5e2474be83a 1299 PIRSF PIRSF036444 28 1299 0.0 T 13-10-2018 IPR011401 Phosphoesterase, YvnB RA13_05800 519b9c73ff06d7e64de2b95d2a0551bf 397 SUPERFAMILY SSF111369 79 169 3.01E-7 T 13-10-2018 RA13_05800 519b9c73ff06d7e64de2b95d2a0551bf 397 Gene3D G3DSA:2.40.30.170 61 317 1.1E-37 T 13-10-2018 RA13_05800 519b9c73ff06d7e64de2b95d2a0551bf 397 Gene3D G3DSA:2.40.420.20 318 378 1.1E-37 T 13-10-2018 RA13_05800 519b9c73ff06d7e64de2b95d2a0551bf 397 Gene3D G3DSA:1.10.287.470 105 187 1.1E-37 T 13-10-2018 RA13_05800 519b9c73ff06d7e64de2b95d2a0551bf 397 Gene3D G3DSA:2.40.50.100 70 224 1.1E-37 T 13-10-2018 RA13_05800 519b9c73ff06d7e64de2b95d2a0551bf 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 264 4.0E-9 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RA13_04085 54616b8e97b251b3ecc33739704d610f 343 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 71 330 3.6E-70 T 13-10-2018 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 RA13_04085 54616b8e97b251b3ecc33739704d610f 343 TIGRFAM TIGR02870 spore_II_D: stage II sporulation protein D 5 331 6.2E-135 T 13-10-2018 IPR014225 Sporulation stage II, protein D firmicutes RA13_04085 54616b8e97b251b3ecc33739704d610f 343 Pfam PF08486 Stage II sporulation protein 68 171 9.2E-23 T 13-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal RA13_13095 f031f97cd5340491d22409e2c2104480 236 SUPERFAMILY SSF56784 4 227 7.03E-41 T 13-10-2018 IPR036412 HAD-like superfamily RA13_13095 f031f97cd5340491d22409e2c2104480 236 Gene3D G3DSA:1.10.150.240 17 100 6.4E-78 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RA13_13095 f031f97cd5340491d22409e2c2104480 236 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 199 2.0E-22 T 13-10-2018 RA13_13095 f031f97cd5340491d22409e2c2104480 236 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 96 194 3.0E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_13095 f031f97cd5340491d22409e2c2104480 236 Gene3D G3DSA:3.40.50.1000 6 223 6.4E-78 T 13-10-2018 IPR023214 HAD superfamily RA13_13095 f031f97cd5340491d22409e2c2104480 236 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 4 227 1.7E-90 T 13-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 RA13_06770 7c472bf883ddb14068381d52084043cc 387 Gene3D G3DSA:3.40.640.10 66 290 3.4E-148 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_06770 7c472bf883ddb14068381d52084043cc 387 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 3 387 1.5E-150 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 RA13_06770 7c472bf883ddb14068381d52084043cc 387 Pfam PF00155 Aminotransferase class I and II 41 382 1.9E-39 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_06770 7c472bf883ddb14068381d52084043cc 387 SUPERFAMILY SSF53383 2 386 1.14E-99 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_06770 7c472bf883ddb14068381d52084043cc 387 Gene3D G3DSA:3.90.1150.10 11 382 3.4E-148 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_16835 26e8a04e77f0027218940d416050f6bf 316 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 155 275 1.2E-19 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_16835 26e8a04e77f0027218940d416050f6bf 316 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 104 8.1E-19 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_16835 26e8a04e77f0027218940d416050f6bf 316 Gene3D G3DSA:3.10.180.10 65 219 1.6E-114 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_16835 26e8a04e77f0027218940d416050f6bf 316 SUPERFAMILY SSF54593 1 303 2.56E-49 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_16835 26e8a04e77f0027218940d416050f6bf 316 Gene3D G3DSA:3.10.180.10 4 314 1.6E-114 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_09845 2ebc152d3fac1358dc428cc84e2cc87f 260 Gene3D G3DSA:3.40.50.300 11 258 8.5E-63 T 13-10-2018 RA13_09845 2ebc152d3fac1358dc428cc84e2cc87f 260 SMART SM00382 38 231 2.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_09845 2ebc152d3fac1358dc428cc84e2cc87f 260 SUPERFAMILY SSF52540 14 247 7.34E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09845 2ebc152d3fac1358dc428cc84e2cc87f 260 Pfam PF00005 ABC transporter 29 185 1.7E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_09845 2ebc152d3fac1358dc428cc84e2cc87f 260 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_09845 2ebc152d3fac1358dc428cc84e2cc87f 260 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 14 260 5.9E-123 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RA13_19845 fd41730f5258862540bf18959898064e 663 SUPERFAMILY SSF51445 4 356 6.41E-86 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_19845 fd41730f5258862540bf18959898064e 663 Pfam PF02449 Beta-galactosidase 10 375 3.1E-118 T 13-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RA13_19845 fd41730f5258862540bf18959898064e 663 Pfam PF08533 Beta-galactosidase C-terminal domain 602 659 1.3E-5 T 13-10-2018 IPR013739 Beta-galactosidase C-terminal GO:0004565|GO:0006012 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RA13_19845 fd41730f5258862540bf18959898064e 663 Gene3D G3DSA:3.20.20.80 1 380 9.0E-98 T 13-10-2018 RA13_19845 fd41730f5258862540bf18959898064e 663 SUPERFAMILY SSF52317 386 593 9.84E-30 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_19845 fd41730f5258862540bf18959898064e 663 PIRSF PIRSF001084 1 661 1.4E-196 T 13-10-2018 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RA13_19845 fd41730f5258862540bf18959898064e 663 Gene3D G3DSA:3.40.50.880 386 595 6.5E-32 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_19845 fd41730f5258862540bf18959898064e 663 Pfam PF08532 Beta-galactosidase trimerisation domain 388 593 8.6E-45 T 13-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 Pfam PF00203 Ribosomal protein S19 3 83 1.4E-35 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 SUPERFAMILY SSF54570 3 84 3.92E-35 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 5.0E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 5.0E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 5.0E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 8.5E-48 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 PIRSF PIRSF002144 1 92 8.2E-32 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.275 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01030 c3bce074df56b8c0e0e1e1ff39287dcb 92 Gene3D G3DSA:3.30.860.10 1 92 6.5E-40 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_09985 5410e52a89b3e22a8f031816736a8aff 115 ProDom PD073895 COMPETENCE COMGE LATE MACHINERY MEMBRANE OPERON DNA THE METHYLATION PART 1 115 2.0E-33 T 13-10-2018 IPR020488 Competence operon G, ComGE RA13_09985 5410e52a89b3e22a8f031816736a8aff 115 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RA13_16170 9b366597aa4002af32ad4e4fc37300af 165 SUPERFAMILY SSF54106 2 47 1.83E-9 T 13-10-2018 RA13_16170 9b366597aa4002af32ad4e4fc37300af 165 Gene3D G3DSA:2.40.440.10 1 165 3.0E-46 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RA13_16170 9b366597aa4002af32ad4e4fc37300af 165 Pfam PF03734 L,D-transpeptidase catalytic domain 56 163 2.2E-22 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RA13_16170 9b366597aa4002af32ad4e4fc37300af 165 SMART SM00257 3 47 5.8E-11 T 13-10-2018 IPR018392 LysM domain RA13_16170 9b366597aa4002af32ad4e4fc37300af 165 Pfam PF01476 LysM domain 4 47 2.4E-9 T 13-10-2018 IPR018392 LysM domain RA13_16170 9b366597aa4002af32ad4e4fc37300af 165 SUPERFAMILY SSF141523 56 163 2.62E-36 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RA13_15590 ce4697eccfb5430ff62e771324aaa2a1 324 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 5 322 24.923 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15590 ce4697eccfb5430ff62e771324aaa2a1 324 ProSitePatterns PS01347 MraY family signature 1. 48 60 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15590 ce4697eccfb5430ff62e771324aaa2a1 324 Pfam PF00953 Glycosyl transferase family 4 82 248 6.7E-39 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 RA13_15590 ce4697eccfb5430ff62e771324aaa2a1 324 ProSitePatterns PS01348 MraY family signature 2. 168 179 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15590 ce4697eccfb5430ff62e771324aaa2a1 324 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 48 60 1.4E-5 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15590 ce4697eccfb5430ff62e771324aaa2a1 324 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 17 323 1.4E-133 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_03205 71e048b63f2d6a30c2ba0ee149b0ea32 110 PIRSF PIRSF000699 1 106 7.0E-40 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 RA13_03205 71e048b63f2d6a30c2ba0ee149b0ea32 110 SUPERFAMILY SSF46973 3 101 1.14E-37 T 13-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 RA13_03205 71e048b63f2d6a30c2ba0ee149b0ea32 110 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 7 100 1.3E-37 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 RA13_03205 71e048b63f2d6a30c2ba0ee149b0ea32 110 TIGRFAM TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component 3 101 2.2E-41 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 RA13_03205 71e048b63f2d6a30c2ba0ee149b0ea32 110 Gene3D G3DSA:1.20.58.280 1 105 8.8E-41 T 13-10-2018 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 189 210 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 56 83 8.1E-49 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 174 198 8.1E-49 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 199 223 8.1E-49 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 6 23 8.1E-49 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 239 256 8.1E-49 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 134 154 8.1E-49 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 181 321 1.5E-56 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 Gene3D G3DSA:3.40.50.720 1 188 1.1E-68 T 13-10-2018 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 2 323 40.276 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 PIRSF PIRSF000114 1 333 4.7E-116 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 SUPERFAMILY SSF51735 3 179 2.27E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 SUPERFAMILY SSF48179 181 332 5.1E-59 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3 160 1.0E-57 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RA13_11010 4b68af4c6b38f1b3faf185497a9d1c6a 345 Gene3D G3DSA:1.10.1040.10 190 337 9.4E-55 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_17000 34e95a6d52e4fb0a850e1da02a921a29 496 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 37 410 4.4E-144 T 13-10-2018 IPR006430 Phage portal protein PBSX family RA13_17000 34e95a6d52e4fb0a850e1da02a921a29 496 Pfam PF04860 Phage portal protein 128 450 4.0E-10 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein RA13_17000 34e95a6d52e4fb0a850e1da02a921a29 496 PIRSF PIRSF019260 7 496 4.9E-178 T 13-10-2018 IPR016753 Phage portal protein PBSX family, Firmicutes RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 SUPERFAMILY SSF103473 9 436 1.27E-81 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 PIRSF PIRSF002808 5 444 6.0E-177 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 2.9E-169 T 13-10-2018 RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 1.5E-258 T 13-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 Gene3D G3DSA:1.20.1250.20 240 442 3.1E-56 T 13-10-2018 RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 Gene3D G3DSA:1.20.1250.20 19 226 1.4E-56 T 13-10-2018 RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 Pfam PF07690 Major Facilitator Superfamily 34 399 1.7E-53 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_00465 4ef2090d7cf2c349ed14efb665d4e1fd 444 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 13-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 RA13_04865 387c80fcebbd93c44ee019d2895c9c13 133 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 120 1.6E-47 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RA13_04865 387c80fcebbd93c44ee019d2895c9c13 133 Gene3D G3DSA:1.20.120.340 1 122 3.3E-35 T 13-10-2018 RA13_04865 387c80fcebbd93c44ee019d2895c9c13 133 Pfam PF02561 Flagellar protein FliS 7 118 1.0E-35 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RA13_04865 387c80fcebbd93c44ee019d2895c9c13 133 PIRSF PIRSF039090 1 129 1.9E-32 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 RA13_04865 387c80fcebbd93c44ee019d2895c9c13 133 SUPERFAMILY SSF101116 4 123 5.49E-35 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 Gene3D G3DSA:3.40.50.720 6 258 1.1E-119 T 13-10-2018 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 Gene3D G3DSA:3.40.50.10860 8 276 1.1E-119 T 13-10-2018 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 281 1.5E-75 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 40.571 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 259 267 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 SUPERFAMILY SSF53223 1 121 2.78E-41 T 13-10-2018 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 SUPERFAMILY SSF51735 122 280 1.66E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 2.3E-41 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 2.6E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 2.6E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 2.6E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 2.6E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 2.6E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 2.6E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 2.6E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_10175 35c5c2a8dc8d17694f912562a57f1815 283 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RA13_04135 71ee0e1fe1bdcecef2a37433a49de3d3 105 Pfam PF00547 Urease, gamma subunit 1 99 2.2E-44 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04135 71ee0e1fe1bdcecef2a37433a49de3d3 105 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 102 2.1E-55 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04135 71ee0e1fe1bdcecef2a37433a49de3d3 105 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.035 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04135 71ee0e1fe1bdcecef2a37433a49de3d3 105 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-45 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04135 71ee0e1fe1bdcecef2a37433a49de3d3 105 SUPERFAMILY SSF54111 1 101 3.27E-43 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04135 71ee0e1fe1bdcecef2a37433a49de3d3 105 PIRSF PIRSF001223 1 100 5.9E-49 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04135 71ee0e1fe1bdcecef2a37433a49de3d3 105 Gene3D G3DSA:3.30.280.10 1 100 3.6E-45 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 Pfam PF00515 Tetratricopeptide repeat 160 193 3.8E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 SMART SM00028 92 125 0.0062 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 SMART SM00028 58 91 0.17 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 SMART SM00028 24 57 0.049 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 SMART SM00028 126 159 24.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 SMART SM00028 160 193 6.1E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 Gene3D G3DSA:1.25.40.10 9 206 5.9E-56 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 Pfam PF13181 Tetratricopeptide repeat 1 22 0.082 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 SUPERFAMILY SSF48452 2 199 9.48E-36 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 72 147 2.8E-6 T 13-10-2018 RA13_09045 c4426b47584a95984f7e7611c8890a86 206 Pfam PF13414 TPR repeat 38 69 4.6E-7 T 13-10-2018 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 SUPERFAMILY SSF47384 224 304 1.2E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 450 2.8E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 Gene3D G3DSA:1.10.8.500 186 235 8.5E-7 T 13-10-2018 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 Pfam PF00672 HAMP domain 188 236 6.3E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 Gene3D G3DSA:3.30.565.10 310 451 2.8E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 SUPERFAMILY SSF55874 309 450 2.49E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 SMART SM00304 187 239 4.7E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 Gene3D G3DSA:1.10.287.130 236 305 9.4E-15 T 13-10-2018 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 304 1.4E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 SMART SM00388 240 306 6.3E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 5.4E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 450 5.4E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 413 5.4E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 432 5.4E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 SMART SM00387 350 451 6.8E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05950 b2c370700a7bee097d04bdaf292186ae 452 SUPERFAMILY SSF158472 188 236 6.93E-8 T 13-10-2018 RA13_08320 830ba641653b21a23976a49409acc388 496 SUPERFAMILY SSF50443 326 494 5.23E-72 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal RA13_08320 830ba641653b21a23976a49409acc388 496 Pfam PF11762 L-arabinose isomerase C-terminal domain 359 472 8.8E-50 T 13-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 RA13_08320 830ba641653b21a23976a49409acc388 496 Hamap MF_00519 L-arabinose isomerase [araA]. 1 473 62.999 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RA13_08320 830ba641653b21a23976a49409acc388 496 SUPERFAMILY SSF53743 3 325 6.54E-116 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 RA13_08320 830ba641653b21a23976a49409acc388 496 PIRSF PIRSF001478 1 496 4.4E-250 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RA13_08320 830ba641653b21a23976a49409acc388 496 Pfam PF02610 L-arabinose isomerase 5 356 1.2E-172 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RA13_08320 830ba641653b21a23976a49409acc388 496 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 5 302 2.0E-153 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 RA13_08320 830ba641653b21a23976a49409acc388 496 Gene3D G3DSA:3.40.50.10940 3 174 8.1E-78 T 13-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 ProSitePatterns PS01128 Shikimate kinase signature. 67 93 - T 13-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 Gene3D G3DSA:3.40.50.300 3 179 1.9E-42 T 13-10-2018 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 SUPERFAMILY SSF52540 12 176 1.2E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 Pfam PF01202 Shikimate kinase 20 177 4.7E-44 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 Hamap MF_00109 Shikimate kinase [aroK]. 11 177 23.583 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 PRINTS PR01100 Shikimate kinase family signature 66 74 2.5E-15 T 13-10-2018 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 PRINTS PR01100 Shikimate kinase family signature 85 94 2.5E-15 T 13-10-2018 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 PRINTS PR01100 Shikimate kinase family signature 14 29 2.5E-15 T 13-10-2018 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 PRINTS PR01100 Shikimate kinase family signature 106 123 2.5E-15 T 13-10-2018 RA13_21875 2224bc1f6aa98569094822efa7ed2f11 187 PRINTS PR01100 Shikimate kinase family signature 38 51 2.5E-15 T 13-10-2018 RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 Gene3D G3DSA:1.25.10.10 194 375 3.7E-29 T 13-10-2018 IPR011989 Armadillo-like helical RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 SUPERFAMILY SSF48371 205 372 8.42E-35 T 13-10-2018 IPR016024 Armadillo-type fold RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 Pfam PF13769 Virulence factor 108 187 6.6E-30 T 13-10-2018 IPR025989 Virulence factor domain RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 SMART SM00932 4 90 1.1E-28 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 SUPERFAMILY SSF110836 1 84 7.19E-23 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 Pfam PF13646 HEAT repeats 267 343 1.5E-12 T 13-10-2018 RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 Gene3D G3DSA:3.30.1370.70 1 92 3.8E-28 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 6 83 5.6E-20 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 SMART SM00567 E-Z type HEAT repeats 219 246 970.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 SMART SM00567 E-Z type HEAT repeats 310 339 4.6E-4 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 SMART SM00567 E-Z type HEAT repeats 279 308 4.5E-4 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RA13_11515 1fd5988ba2e7e7dfafbfae8881a0d55a 376 SMART SM00567 E-Z type HEAT repeats 248 277 0.072 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RA13_18420 c841a69cd707a71755f6ce17376d44ff 117 Hamap MF_01526 UPF0342 protein . 2 113 19.149 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA RA13_18420 c841a69cd707a71755f6ce17376d44ff 117 SUPERFAMILY SSF158622 4 114 4.58E-39 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily RA13_18420 c841a69cd707a71755f6ce17376d44ff 117 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 6 108 4.3E-25 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA RA13_18420 c841a69cd707a71755f6ce17376d44ff 117 Gene3D G3DSA:1.20.1500.10 2 113 4.2E-39 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily RA13_01040 5ab205b22bb518b0d0f13e56a396b91f 95 ProSitePatterns PS00050 Ribosomal protein L23 signature. 77 92 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01040 5ab205b22bb518b0d0f13e56a396b91f 95 Pfam PF00276 Ribosomal protein L23 6 88 2.9E-32 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RA13_01040 5ab205b22bb518b0d0f13e56a396b91f 95 Gene3D G3DSA:3.30.70.330 1 95 1.1E-32 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RA13_01040 5ab205b22bb518b0d0f13e56a396b91f 95 SUPERFAMILY SSF54189 2 91 1.58E-30 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01040 5ab205b22bb518b0d0f13e56a396b91f 95 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 5 95 21.716 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 SUPERFAMILY SSF51261 546 693 9.07E-53 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 64 365 1.9E-99 T 13-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 Pfam PF02378 Phosphotransferase system, EIIC 14 354 2.1E-97 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 Pfam PF00367 phosphotransferase system, EIIB 444 476 1.6E-13 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 Gene3D G3DSA:2.70.70.10 538 699 4.4E-64 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 516 3.3E-248 T 13-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 552 673 1.3E-48 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 Gene3D G3DSA:3.30.1360.60 439 517 9.4E-28 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 413 500 2.4E-28 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 614 626 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 454 471 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 SUPERFAMILY SSF55604 443 513 1.24E-19 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_16250 fc897b8dd13239c3f35930c27e2a4bb0 699 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 553 672 8.2E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 254 2.6E-86 T 13-10-2018 RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 PIRSF PIRSF000094 2 258 8.6E-103 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 Gene3D G3DSA:3.40.50.720 1 258 4.2E-61 T 13-10-2018 RA13_17435 4f8189f35bbd7d1e9bfa9d0cd5edc4e1 258 SUPERFAMILY SSF51735 6 255 1.05E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 Gene3D G3DSA:3.90.1150.10 10 440 8.5E-163 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 PIRSF PIRSF000521 19 443 6.3E-28 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 441 5.2E-169 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 SUPERFAMILY SSF53383 10 443 4.96E-125 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 443 53.15 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 248 285 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 Gene3D G3DSA:3.40.640.10 62 338 8.5E-163 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_07585 95335624a70542ccda37ad8ab65bbdc5 448 Pfam PF00202 Aminotransferase class-III 22 440 1.1E-113 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_04925 b42eadb8a0eacf3b948d7c880f64eff2 399 SUPERFAMILY SSF50156 303 385 6.18E-14 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_04925 b42eadb8a0eacf3b948d7c880f64eff2 399 Gene3D G3DSA:2.30.42.10 280 367 1.1E-11 T 13-10-2018 RA13_04925 b42eadb8a0eacf3b948d7c880f64eff2 399 SMART SM00228 295 361 9.6E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_04925 b42eadb8a0eacf3b948d7c880f64eff2 399 Pfam PF13180 PDZ domain 299 349 2.2E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_17095 70674ee741b566ae93ece2fd77176030 497 Pfam PF08666 SAF domain 11 80 3.6E-16 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RA13_17095 70674ee741b566ae93ece2fd77176030 497 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 107 496 1.2E-158 T 13-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 RA13_17095 70674ee741b566ae93ece2fd77176030 497 Gene3D G3DSA:3.90.1210.30 3 85 2.6E-30 T 13-10-2018 RA13_17095 70674ee741b566ae93ece2fd77176030 497 SMART SM00858 11 82 2.0E-14 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RA13_17630 3bc7893edfaa24e157ed74c0db2f8f42 329 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_17630 3bc7893edfaa24e157ed74c0db2f8f42 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 327 9.6E-28 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_17630 3bc7893edfaa24e157ed74c0db2f8f42 329 SUPERFAMILY SSF52540 9 260 3.31E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17630 3bc7893edfaa24e157ed74c0db2f8f42 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 307 2.9E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_17630 3bc7893edfaa24e157ed74c0db2f8f42 329 SMART SM00382 45 238 2.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_17630 3bc7893edfaa24e157ed74c0db2f8f42 329 Gene3D G3DSA:3.40.50.300 7 329 5.6E-104 T 13-10-2018 RA13_17630 3bc7893edfaa24e157ed74c0db2f8f42 329 Pfam PF00005 ABC transporter 37 188 2.3E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_04070 54156debbf47767cddb2f2dc6ce24da6 76 Pfam PF06612 Protein of unknown function (DUF1146) 16 63 6.8E-22 T 13-10-2018 IPR009526 Protein of unknown function DUF1146 RA13_04070 54156debbf47767cddb2f2dc6ce24da6 76 TIGRFAM TIGR02327 int_mem_ywzB: conserved hypothetical integral membrane protein 10 76 3.9E-26 T 13-10-2018 IPR009526 Protein of unknown function DUF1146 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 SUPERFAMILY SSF56112 8 269 4.18E-85 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Gene3D G3DSA:3.30.200.20 1 90 4.1E-34 T 13-10-2018 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 130 142 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 SMART SM00740 354 422 2.8E-14 T 13-10-2018 IPR005543 PASTA domain RA13_15295 21e340f068dc05810f512346ae50e3f3 646 SMART SM00740 491 557 1.7E-16 T 13-10-2018 IPR005543 PASTA domain RA13_15295 21e340f068dc05810f512346ae50e3f3 646 SMART SM00740 423 490 3.0E-13 T 13-10-2018 IPR005543 PASTA domain RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Gene3D G3DSA:3.30.10.20 353 424 8.8E-13 T 13-10-2018 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 SMART SM00220 11 268 2.2E-76 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Gene3D G3DSA:3.30.10.20 425 491 2.3E-17 T 13-10-2018 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Pfam PF03793 PASTA domain 496 556 1.5E-12 T 13-10-2018 IPR005543 PASTA domain RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Pfam PF03793 PASTA domain 430 489 4.0E-15 T 13-10-2018 IPR005543 PASTA domain RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Pfam PF03793 PASTA domain 358 421 4.3E-10 T 13-10-2018 IPR005543 PASTA domain RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Gene3D G3DSA:1.10.510.10 92 278 1.6E-54 T 13-10-2018 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Gene3D G3DSA:2.60.40.2560 564 642 1.7E-16 T 13-10-2018 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Gene3D G3DSA:3.30.10.20 495 559 4.4E-14 T 13-10-2018 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 Pfam PF00069 Protein kinase domain 11 258 4.5E-57 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RA13_15295 21e340f068dc05810f512346ae50e3f3 646 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 17 40 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RA13_11650 7e7a0e07707fbe281070f2173b0fd3d6 73 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 67 8.1E-24 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_11650 7e7a0e07707fbe281070f2173b0fd3d6 73 SUPERFAMILY SSF47413 1 69 1.38E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_11650 7e7a0e07707fbe281070f2173b0fd3d6 73 Gene3D G3DSA:1.10.260.40 6 73 1.7E-10 T 13-10-2018 RA13_11650 7e7a0e07707fbe281070f2173b0fd3d6 73 SMART SM00530 6 62 2.5E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 ProSitePatterns PS00789 Chorismate synthase signature 3. 339 355 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 PIRSF PIRSF001456 1 384 3.2E-131 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 ProSitePatterns PS00787 Chorismate synthase signature 1. 7 22 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 Pfam PF01264 Chorismate synthase 1 364 5.1E-124 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 ProSitePatterns PS00788 Chorismate synthase signature 2. 131 147 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 TIGRFAM TIGR00033 aroC: chorismate synthase 1 369 1.2E-127 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 SUPERFAMILY SSF103263 1 388 5.23E-149 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 Hamap MF_00300 Chorismate synthase [aroC]. 1 372 36.557 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_11070 ec45609ec0f0eda22f0c936f6a1d4ae9 390 Gene3D G3DSA:3.60.150.10 1 389 2.7E-155 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 595 607 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 184 199 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 364 378 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 611 627 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 378 398 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 476 485 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 10 20 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 314 330 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 199 212 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR01159 DNA gyrase subunit B signature 223 245 6.7E-58 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 SUPERFAMILY SSF55874 10 221 1.83E-67 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Pfam PF01751 Toprim domain 425 528 2.4E-16 T 13-10-2018 IPR006171 TOPRIM domain RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 SMART SM00433 39 635 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 SMART SM00387 35 179 3.4E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Gene3D G3DSA:3.40.50.670 412 644 4.2E-102 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 SUPERFAMILY SSF56719 400 635 1.15E-86 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Gene3D G3DSA:3.30.565.10 7 222 5.0E-87 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 ProSitePatterns PS00177 DNA topoisomerase II signature. 428 436 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 TIGRFAM TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit 9 644 0.0 T 13-10-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 156 3.2E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Hamap MF_00939 DNA topoisomerase 4 subunit B [parE]. 8 640 48.401 T 13-10-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Pfam PF00204 DNA gyrase B 224 394 1.8E-58 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 270 283 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 492 508 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 574 590 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 116 130 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 530 542 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 74 87 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 510 527 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 39 54 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 PRINTS PR00418 DNA topoisomerase II family signature 426 440 5.9E-70 T 13-10-2018 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 570 631 2.3E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 Gene3D G3DSA:3.30.230.10 223 404 5.5E-71 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_12680 56c468bb8a2ef3b49b8954e77db1d464 656 SUPERFAMILY SSF54211 224 394 1.48E-52 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_08405 299010ef449d7dc167efa82f964ea382 804 Gene3D G3DSA:3.30.70.380 711 803 4.7E-31 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 SUPERFAMILY SSF55681 475 697 3.93E-52 T 13-10-2018 RA13_08405 299010ef449d7dc167efa82f964ea382 804 SMART SM00874 411 479 3.8E-27 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RA13_08405 299010ef449d7dc167efa82f964ea382 804 SMART SM00896 710 803 1.1E-44 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 SUPERFAMILY SSF54991 705 803 8.37E-31 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 SMART SM00873 221 394 9.8E-88 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Gene3D G3DSA:3.30.56.10 410 483 4.5E-25 T 13-10-2018 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 797 45.748 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Gene3D G3DSA:3.30.930.10 495 698 7.5E-62 T 13-10-2018 RA13_08405 299010ef449d7dc167efa82f964ea382 804 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 803 2.3E-267 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Pfam PF03147 Ferredoxin-fold anticodon binding domain 710 803 3.6E-29 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Pfam PF03483 B3/4 domain 222 394 1.8E-63 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Gene3D G3DSA:3.30.56.10 4 189 1.1E-67 T 13-10-2018 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Pfam PF01588 Putative tRNA binding domain 46 152 1.4E-26 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Pfam PF03484 tRNA synthetase B5 domain 414 479 4.7E-21 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RA13_08405 299010ef449d7dc167efa82f964ea382 804 SUPERFAMILY SSF50249 36 199 9.3E-46 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_08405 299010ef449d7dc167efa82f964ea382 804 SUPERFAMILY SSF46955 413 483 1.1E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_08405 299010ef449d7dc167efa82f964ea382 804 Gene3D G3DSA:3.50.40.10 204 404 3.5E-80 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 RA13_08405 299010ef449d7dc167efa82f964ea382 804 SUPERFAMILY SSF56037 209 402 2.46E-70 T 13-10-2018 RA13_08405 299010ef449d7dc167efa82f964ea382 804 Gene3D G3DSA:2.40.50.140 40 161 1.1E-67 T 13-10-2018 RA13_03165 b03bb1bc25c3f8a09bc4abaa0041b171 296 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_03165 b03bb1bc25c3f8a09bc4abaa0041b171 296 Pfam PF00005 ABC transporter 18 155 6.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_03165 b03bb1bc25c3f8a09bc4abaa0041b171 296 SUPERFAMILY SSF52540 2 218 8.26E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03165 b03bb1bc25c3f8a09bc4abaa0041b171 296 Gene3D G3DSA:3.40.50.300 1 230 3.9E-68 T 13-10-2018 RA13_03165 b03bb1bc25c3f8a09bc4abaa0041b171 296 Pfam PF13732 Domain of unknown function (DUF4162) 208 293 3.5E-12 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 RA13_03165 b03bb1bc25c3f8a09bc4abaa0041b171 296 SMART SM00382 26 202 1.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 Gene3D G3DSA:3.40.50.970 1 183 4.5E-59 T 13-10-2018 RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 SUPERFAMILY SSF52467 187 350 2.0E-44 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 SUPERFAMILY SSF52518 357 557 8.65E-64 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 321 2.7E-34 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 SUPERFAMILY SSF52518 4 176 5.56E-45 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 7.7E-47 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 Gene3D G3DSA:3.40.50.1220 184 335 5.3E-47 T 13-10-2018 RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 Gene3D G3DSA:3.40.50.970 348 570 1.7E-62 T 13-10-2018 RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RA13_21215 93b80b2254d0e235cfdf41c0b5dceec5 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 381 526 2.2E-44 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 SUPERFAMILY SSF81296 37 108 2.45E-9 T 13-10-2018 IPR014756 Immunoglobulin E-set RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 Gene3D G3DSA:3.20.20.80 125 514 6.1E-145 T 13-10-2018 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 10 617 1.1E-296 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 Pfam PF00128 Alpha amylase, catalytic domain 177 277 7.2E-11 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 26 108 8.1E-23 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 Gene3D G3DSA:2.60.40.1180 516 619 8.6E-30 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 SUPERFAMILY SSF51445 85 508 4.56E-104 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 PIRSF PIRSF000463 1 626 3.5E-252 T 13-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 SMART SM00642 152 496 1.2E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 Gene3D G3DSA:2.60.40.10 3 121 5.8E-41 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 4 619 39.114 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 SUPERFAMILY SSF51011 516 618 1.39E-28 T 13-10-2018 RA13_07225 5f0ad34b8251ea8672f660ce436b17f1 626 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 520 618 1.8E-17 T 13-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 RA13_16765 4826ec5da8cd40cb5960593020a4d5ae 334 Pfam PF00005 ABC transporter 28 179 3.1E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_16765 4826ec5da8cd40cb5960593020a4d5ae 334 SMART SM00382 36 229 2.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_16765 4826ec5da8cd40cb5960593020a4d5ae 334 Gene3D G3DSA:3.40.50.300 4 332 9.4E-102 T 13-10-2018 RA13_16765 4826ec5da8cd40cb5960593020a4d5ae 334 SUPERFAMILY SSF52540 6 251 3.27E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_16765 4826ec5da8cd40cb5960593020a4d5ae 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 230 318 1.5E-25 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_16765 4826ec5da8cd40cb5960593020a4d5ae 334 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_16765 4826ec5da8cd40cb5960593020a4d5ae 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 298 6.4E-18 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_05680 a0e1b975807526215219dc3ad93076d4 139 Pfam PF02600 Disulfide bond formation protein DsbB 12 130 1.8E-7 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RA13_05680 a0e1b975807526215219dc3ad93076d4 139 Hamap MF_00287 Probable disulfide formation protein [bdbC]. 1 136 24.87 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC RA13_05680 a0e1b975807526215219dc3ad93076d4 139 PIRSF PIRSF036659 1 139 7.3E-61 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC RA13_05680 a0e1b975807526215219dc3ad93076d4 139 Gene3D G3DSA:1.20.1550.10 1 138 1.4E-6 T 13-10-2018 IPR023380 DsbB-like superfamily RA13_05680 a0e1b975807526215219dc3ad93076d4 139 SUPERFAMILY SSF158442 8 131 5.36E-30 T 13-10-2018 IPR023380 DsbB-like superfamily RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SMART SM00474 304 470 9.1E-23 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 652 675 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 743 754 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 706 731 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 606 628 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 827 840 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 765 776 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 797 813 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 682 695 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 629 644 7.4E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Gene3D G3DSA:3.30.420.10 302 493 8.1E-61 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Gene3D G3DSA:3.30.70.370 615 876 3.5E-109 T 13-10-2018 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SUPERFAMILY SSF56672 474 880 2.0E-158 T 13-10-2018 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 ProSitePatterns PS00447 DNA polymerase family A signature. 706 725 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 TIGRFAM TIGR00593 pola: DNA polymerase I 7 880 0.0 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Gene3D G3DSA:3.40.50.1010 7 280 1.3E-100 T 13-10-2018 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 174 267 2.3E-35 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SUPERFAMILY SSF47807 173 287 6.58E-35 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Gene3D G3DSA:1.10.150.20 176 249 1.3E-100 T 13-10-2018 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 172 3.5E-54 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SMART SM00475 5 264 8.1E-155 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SUPERFAMILY SSF53098 304 471 1.67E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SMART SM00279 175 210 9.0E-19 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Gene3D G3DSA:1.10.150.20 661 804 3.5E-109 T 13-10-2018 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Gene3D G3DSA:1.20.1060.10 495 609 6.7E-45 T 13-10-2018 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 Pfam PF00476 DNA polymerase family A 503 878 1.6E-162 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SMART SM00482 637 844 7.1E-121 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_08150 8d6a5ea0131163c85fb039ebd00e3580 880 SUPERFAMILY SSF88723 4 172 7.57E-55 T 13-10-2018 IPR029060 PIN-like domain superfamily RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF13193 AMP-binding enzyme C-terminal domain 1914 1986 1.0E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF13193 AMP-binding enzyme C-terminal domain 876 945 6.7E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.300.30 863 959 8.5E-31 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF47336 963 1037 5.04E-18 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.559.10 2079 2264 7.5E-55 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2035 2050 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF56801 422 983 1.96E-159 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 ProSitePatterns PS00455 Putative AMP-binding domain signature. 603 614 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF00668 Condensation domain 3 444 3.3E-114 T 13-10-2018 IPR001242 Condensation domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF00668 Condensation domain 1053 1478 3.5E-140 T 13-10-2018 IPR001242 Condensation domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF00668 Condensation domain 2088 2545 6.2E-110 T 13-10-2018 IPR001242 Condensation domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.559.30 1218 1462 2.0E-154 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF00501 AMP-binding enzyme 1500 1905 1.1E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF00501 AMP-binding enzyme 464 868 2.4E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF52777 8 181 6.23E-32 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF52777 2286 2539 2.22E-34 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF56801 1458 2024 1.44E-146 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.40.50.12780 451 862 1.4E-135 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.300.30 1900 2000 1.7E-32 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF00550 Phosphopantetheine attachment site 2016 2075 6.0E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Pfam PF00550 Phosphopantetheine attachment site 973 1034 6.2E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.559.30 192 450 5.7E-44 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF52777 1051 1234 2.22E-44 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:1.10.1200.10 2001 2078 1.2E-21 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:1.10.1200.10 960 1042 9.8E-25 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF47336 2003 2075 1.7E-17 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF52777 1221 1467 2.0E-64 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SMART SM00823 Phosphopantetheine attachment site 2011 2079 0.0011 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SMART SM00823 Phosphopantetheine attachment site 971 1040 0.0036 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.559.30 2265 2535 1.2E-57 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF52777 2084 2269 1.67E-35 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.40.50.12780 1494 1899 2.6E-119 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1644 1655 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 SUPERFAMILY SSF52777 187 447 4.0E-38 T 13-10-2018 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.559.10 8 191 8.0E-34 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 2406 2552 3.4E-42 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 485 892 1.1E-133 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1521 1929 2.5E-119 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12565 06dd567a9a061bab9b6a239c404e9a98 2560 Gene3D G3DSA:3.30.559.10 1057 1408 2.0E-154 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_10590 ad483216bda8632cd015af00566f29a7 149 Pfam PF01475 Ferric uptake regulator family 15 136 1.1E-39 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RA13_10590 ad483216bda8632cd015af00566f29a7 149 Gene3D G3DSA:1.10.10.10 1 88 6.1E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10590 ad483216bda8632cd015af00566f29a7 149 Gene3D G3DSA:3.30.1490.190 93 149 2.0E-15 T 13-10-2018 RA13_10590 ad483216bda8632cd015af00566f29a7 149 SUPERFAMILY SSF46785 7 141 8.55E-38 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_13950 b8f6f90d56c1a0ca37d90d52478d0fad 135 SUPERFAMILY SSF159006 3 135 2.49E-17 T 13-10-2018 RA13_13950 b8f6f90d56c1a0ca37d90d52478d0fad 135 Pfam PF09643 YopX protein 4 132 8.7E-22 T 13-10-2018 IPR019096 YopX protein RA13_13950 b8f6f90d56c1a0ca37d90d52478d0fad 135 Gene3D G3DSA:2.10.70.50 1 49 7.3E-21 T 13-10-2018 RA13_13950 b8f6f90d56c1a0ca37d90d52478d0fad 135 Gene3D G3DSA:2.30.30.290 55 135 1.1E-13 T 13-10-2018 IPR023385 YopX-like, C-terminal RA13_21185 1c4c24c5ab1556f412746658347e6773 425 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 13 424 38.916 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21185 1c4c24c5ab1556f412746658347e6773 425 Pfam PF01566 Natural resistance-associated macrophage protein 50 398 2.9E-117 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21185 1c4c24c5ab1556f412746658347e6773 425 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 28 392 2.8E-135 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21185 1c4c24c5ab1556f412746658347e6773 425 PRINTS PR00447 Natural resistance-associated macrophage protein signature 109 135 7.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21185 1c4c24c5ab1556f412746658347e6773 425 PRINTS PR00447 Natural resistance-associated macrophage protein signature 212 235 7.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21185 1c4c24c5ab1556f412746658347e6773 425 PRINTS PR00447 Natural resistance-associated macrophage protein signature 314 333 7.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21185 1c4c24c5ab1556f412746658347e6773 425 PRINTS PR00447 Natural resistance-associated macrophage protein signature 162 183 7.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21185 1c4c24c5ab1556f412746658347e6773 425 PRINTS PR00447 Natural resistance-associated macrophage protein signature 137 156 7.6E-31 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_01135 a3674b876d39e95f208fe7255b743c40 49 Pfam PF00471 Ribosomal protein L33 3 49 2.4E-18 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01135 a3674b876d39e95f208fe7255b743c40 49 SUPERFAMILY SSF57829 1 49 1.46E-16 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RA13_01135 a3674b876d39e95f208fe7255b743c40 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 49 1.4E-16 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01135 a3674b876d39e95f208fe7255b743c40 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01135 a3674b876d39e95f208fe7255b743c40 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 17.668 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01135 a3674b876d39e95f208fe7255b743c40 49 Gene3D G3DSA:2.20.28.120 1 49 4.9E-19 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09085 3fb0e8bfc00048a49c9f65d0298a64d3 242 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_09085 3fb0e8bfc00048a49c9f65d0298a64d3 242 Gene3D G3DSA:3.40.50.300 1 241 2.0E-77 T 13-10-2018 RA13_09085 3fb0e8bfc00048a49c9f65d0298a64d3 242 PIRSF PIRSF039085 1 241 2.0E-116 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RA13_09085 3fb0e8bfc00048a49c9f65d0298a64d3 242 SMART SM00382 26 213 5.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_09085 3fb0e8bfc00048a49c9f65d0298a64d3 242 Pfam PF00005 ABC transporter 17 165 2.9E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_09085 3fb0e8bfc00048a49c9f65d0298a64d3 242 SUPERFAMILY SSF52540 1 234 3.33E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05565 8393d7150ff13d870a0fe4ac0380a7ca 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 209 1.9E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_05565 8393d7150ff13d870a0fe4ac0380a7ca 226 SUPERFAMILY SSF161098 16 199 1.96E-35 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05565 8393d7150ff13d870a0fe4ac0380a7ca 226 Gene3D G3DSA:1.10.3720.10 15 211 2.1E-31 T 13-10-2018 IPR035906 MetI-like superfamily RA13_11570 6c868034d7d29aa8c9415bbdebb6bda3 422 TIGRFAM TIGR02079 THD1: threonine dehydratase 14 422 9.5E-195 T 13-10-2018 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RA13_11570 6c868034d7d29aa8c9415bbdebb6bda3 422 Gene3D G3DSA:3.40.50.1100 59 158 7.4E-118 T 13-10-2018 RA13_11570 6c868034d7d29aa8c9415bbdebb6bda3 422 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 316 4.1E-74 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RA13_11570 6c868034d7d29aa8c9415bbdebb6bda3 422 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 51 64 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RA13_11570 6c868034d7d29aa8c9415bbdebb6bda3 422 SUPERFAMILY SSF53686 13 366 2.75E-99 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RA13_11570 6c868034d7d29aa8c9415bbdebb6bda3 422 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 421 8.9E-30 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RA13_11570 6c868034d7d29aa8c9415bbdebb6bda3 422 Gene3D G3DSA:3.40.50.1100 23 326 7.4E-118 T 13-10-2018 RA13_10980 3cfdf0591674edd9370f8a1b74ca2b47 349 Pfam PF01070 FMN-dependent dehydrogenase 166 324 1.7E-23 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 RA13_10980 3cfdf0591674edd9370f8a1b74ca2b47 349 Gene3D G3DSA:3.20.20.70 2 349 2.4E-128 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_10980 3cfdf0591674edd9370f8a1b74ca2b47 349 SUPERFAMILY SSF51395 23 343 1.88E-88 T 13-10-2018 RA13_10980 3cfdf0591674edd9370f8a1b74ca2b47 349 PIRSF PIRSF003314 1 340 8.1E-126 T 13-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RA13_10980 3cfdf0591674edd9370f8a1b74ca2b47 349 TIGRFAM TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2 5 329 1.2E-123 T 13-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RA13_10980 3cfdf0591674edd9370f8a1b74ca2b47 349 SMART SM01240 23 342 1.0E-4 T 13-10-2018 RA13_10980 3cfdf0591674edd9370f8a1b74ca2b47 349 Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. 3 330 38.544 T 13-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 RA13_21570 4b23f0a72e7ff8cb0e4dcc65e2d3dd22 264 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 255 4.3E-61 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_21570 4b23f0a72e7ff8cb0e4dcc65e2d3dd22 264 Gene3D G3DSA:3.40.190.10 37 254 6.7E-64 T 13-10-2018 RA13_21570 4b23f0a72e7ff8cb0e4dcc65e2d3dd22 264 SUPERFAMILY SSF53850 3 258 6.9E-68 T 13-10-2018 RA13_21570 4b23f0a72e7ff8cb0e4dcc65e2d3dd22 264 SMART SM00062 34 257 6.9E-82 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_21570 4b23f0a72e7ff8cb0e4dcc65e2d3dd22 264 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 56 69 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RA13_21570 4b23f0a72e7ff8cb0e4dcc65e2d3dd22 264 Gene3D G3DSA:3.40.190.10 101 217 6.7E-64 T 13-10-2018 RA13_10900 b1a18372cb39fac6db65fd9bf8dec711 352 PIRSF PIRSF021350 4 352 9.0E-114 T 13-10-2018 IPR008308 Uncharacterised conserved protein UCP021350 RA13_10900 b1a18372cb39fac6db65fd9bf8dec711 352 Pfam PF14493 Helix-turn-helix domain 256 344 1.3E-20 T 13-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RA13_19525 ee516988325156d742918f93edbff70e 238 TIGRFAM TIGR02404 trehalos_R_Bsub: trehalose operon repressor 5 236 3.8E-105 T 13-10-2018 IPR012770 Trehalose operon transcriptional repressor RA13_19525 ee516988325156d742918f93edbff70e 238 Gene3D G3DSA:1.10.10.10 1 68 1.5E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19525 ee516988325156d742918f93edbff70e 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.9E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_19525 ee516988325156d742918f93edbff70e 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.9E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_19525 ee516988325156d742918f93edbff70e 238 Gene3D G3DSA:3.40.1410.10 88 228 6.8E-31 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_19525 ee516988325156d742918f93edbff70e 238 Pfam PF07702 UTRA domain 91 229 2.5E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_19525 ee516988325156d742918f93edbff70e 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 6.3E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_19525 ee516988325156d742918f93edbff70e 238 SUPERFAMILY SSF64288 75 234 1.73E-42 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_19525 ee516988325156d742918f93edbff70e 238 SMART SM00345 9 68 4.4E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_19525 ee516988325156d742918f93edbff70e 238 SMART SM00866 90 229 1.4E-27 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_19525 ee516988325156d742918f93edbff70e 238 SUPERFAMILY SSF46785 3 77 7.44E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 Gene3D G3DSA:1.20.5.710 3 53 4.9E-20 T 13-10-2018 RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 57 123 2.3E-30 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 SUPERFAMILY SSF48300 4 58 3.92E-16 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 SUPERFAMILY SSF54736 52 123 9.42E-25 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 123 1.3E-51 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 96 8.0E-14 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 51 5.1E-20 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 Gene3D G3DSA:3.30.1390.10 54 123 9.7E-31 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RA13_01105 ec13e064b216f3088383a22b0a1f9708 123 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 123 25.446 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 Pfam PF13404 AsnC-type helix-turn-helix domain 3 44 7.0E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 Gene3D G3DSA:1.10.10.10 1 50 4.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.1E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.1E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.1E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 SMART SM00344 3 109 2.7E-43 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 Pfam PF01037 Lrp/AsnC ligand binding domain 70 135 2.9E-13 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 Gene3D G3DSA:3.30.70.920 51 144 4.6E-27 T 13-10-2018 RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 SUPERFAMILY SSF54909 64 137 2.5E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_21255 65e2c3a79ada553f7f3b33a75162d8e0 144 SUPERFAMILY SSF46785 2 62 9.57E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_07510 02f428a7de21a05829045bf8ea89e5dd 231 SUPERFAMILY SSF52540 1 223 2.46E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07510 02f428a7de21a05829045bf8ea89e5dd 231 Pfam PF00005 ABC transporter 25 173 1.0E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_07510 02f428a7de21a05829045bf8ea89e5dd 231 Gene3D G3DSA:3.40.50.300 1 230 6.8E-70 T 13-10-2018 RA13_07510 02f428a7de21a05829045bf8ea89e5dd 231 SMART SM00382 34 224 4.8E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_07510 02f428a7de21a05829045bf8ea89e5dd 231 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_09795 53de8c013761f30c47f82bdb534b3ba2 100 Gene3D G3DSA:3.10.350.10 47 95 2.2E-5 T 13-10-2018 IPR036779 LysM domain superfamily RA13_09795 53de8c013761f30c47f82bdb534b3ba2 100 ProDom PD067165 YQFZ MEMBRANE WALL BH1402 TRANSMEMBRANE OB1935 CELL 1 98 1.0E-32 T 13-10-2018 IPR020506 Uncharacterised protein family YqfZ RA13_09795 53de8c013761f30c47f82bdb534b3ba2 100 SMART SM00257 49 96 2.3E-4 T 13-10-2018 IPR018392 LysM domain RA13_10550 48e670464991cfd97fbbe148124b6ce1 387 Pfam PF14520 Helix-hairpin-helix domain 319 366 6.3E-6 T 13-10-2018 RA13_10550 48e670464991cfd97fbbe148124b6ce1 387 Pfam PF13263 PHP-associated 196 242 1.3E-5 T 13-10-2018 RA13_10550 48e670464991cfd97fbbe148124b6ce1 387 SUPERFAMILY SSF47781 309 370 1.41E-8 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_10550 48e670464991cfd97fbbe148124b6ce1 387 TIGRFAM TIGR00375 TIGR00375: TIGR00375 family protein 25 385 2.3E-113 T 13-10-2018 IPR005287 Conserved hypothetical protein CHP00375 RA13_10550 48e670464991cfd97fbbe148124b6ce1 387 Gene3D G3DSA:3.20.20.140 1 240 4.7E-12 T 13-10-2018 RA13_10550 48e670464991cfd97fbbe148124b6ce1 387 Gene3D G3DSA:1.10.150.20 315 368 2.8E-7 T 13-10-2018 RA13_10550 48e670464991cfd97fbbe148124b6ce1 387 SUPERFAMILY SSF89550 2 243 1.96E-13 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RA13_03910 452b2d89962beac3a80fdd595726cf36 429 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 42.475 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_03910 452b2d89962beac3a80fdd595726cf36 429 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 8.6E-176 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_03910 452b2d89962beac3a80fdd595726cf36 429 Gene3D G3DSA:3.65.10.10 21 228 7.0E-160 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RA13_03910 452b2d89962beac3a80fdd595726cf36 429 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 406 3.7E-97 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RA13_03910 452b2d89962beac3a80fdd595726cf36 429 SUPERFAMILY SSF55205 1 416 1.57E-135 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RA13_03910 452b2d89962beac3a80fdd595726cf36 429 Gene3D G3DSA:3.65.10.10 6 413 7.0E-160 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 ProSitePatterns PS01335 Methylglyoxal synthase active site. 54 62 - T 13-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 SMART SM00851 14 107 3.2E-22 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 Gene3D G3DSA:3.40.50.1380 1 133 3.3E-55 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 1 120 33.935 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 PIRSF PIRSF006614 1 136 4.2E-60 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 1 124 1.8E-63 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 SUPERFAMILY SSF52335 1 129 2.09E-51 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RA13_11190 2c004dc7d51e235c3ed43216d8967e0b 137 Pfam PF02142 MGS-like domain 15 107 2.3E-18 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RA13_19710 1868a4f46c5bf01bea8be70d808f4ed3 485 Gene3D G3DSA:3.40.605.10 28 472 1.3E-153 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_19710 1868a4f46c5bf01bea8be70d808f4ed3 485 Gene3D G3DSA:3.40.309.10 256 443 1.3E-153 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_19710 1868a4f46c5bf01bea8be70d808f4ed3 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_19710 1868a4f46c5bf01bea8be70d808f4ed3 485 SUPERFAMILY SSF53720 6 478 9.03E-151 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_19710 1868a4f46c5bf01bea8be70d808f4ed3 485 Pfam PF00171 Aldehyde dehydrogenase family 16 474 1.8E-158 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 SUPERFAMILY SSF53448 5 96 4.93E-28 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 Gene3D G3DSA:1.25.40.10 175 313 2.6E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 SUPERFAMILY SSF48452 205 360 1.08E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 Gene3D G3DSA:3.90.550.10 1 138 9.6E-29 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 Pfam PF00535 Glycosyl transferase family 2 11 130 7.1E-24 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 SMART SM00028 324 357 0.082 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 SMART SM00028 279 312 0.24 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 SMART SM00028 245 278 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_16660 92aa1862a7730ff0e2dab6666c403df5 375 Gene3D G3DSA:1.25.40.10 314 375 1.5E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11840 7af27fcf4a4722e8c1fe2b2f12928a07 202 Pfam PF00881 Nitroreductase family 9 182 4.1E-28 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_11840 7af27fcf4a4722e8c1fe2b2f12928a07 202 Gene3D G3DSA:3.40.109.10 1 202 4.2E-49 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_11840 7af27fcf4a4722e8c1fe2b2f12928a07 202 SUPERFAMILY SSF55469 1 201 6.02E-52 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_12040 c84c58d9ec49ecb2717ab1f93841323e 400 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 10 394 3.8E-73 T 13-10-2018 IPR024455 Phage capsid RA13_12040 c84c58d9ec49ecb2717ab1f93841323e 400 Pfam PF05065 Phage capsid family 131 394 1.7E-30 T 13-10-2018 IPR024455 Phage capsid RA13_12040 c84c58d9ec49ecb2717ab1f93841323e 400 SUPERFAMILY SSF56563 123 396 1.18E-43 T 13-10-2018 RA13_05500 936262a253401b9a02619c5ec69c36b7 292 Gene3D G3DSA:3.40.630.30 88 284 9.2E-19 T 13-10-2018 RA13_05500 936262a253401b9a02619c5ec69c36b7 292 Pfam PF13480 Acetyltransferase (GNAT) domain 144 267 2.5E-8 T 13-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 RA13_05500 936262a253401b9a02619c5ec69c36b7 292 SUPERFAMILY SSF55729 131 285 2.12E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_15730 db61f734581d9a15513c344ff8d45c36 297 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 26 278 4.0E-66 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related RA13_15730 db61f734581d9a15513c344ff8d45c36 297 TIGRFAM TIGR02737 caa3_CtaG: cytochrome c oxidase assembly factor CtaG 3 280 2.6E-130 T 13-10-2018 IPR014108 Cytochrome c oxidase caa3 type assembly factor CtaG RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 SUPERFAMILY SSF48264 23 396 4.71E-94 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 Gene3D G3DSA:1.10.630.10 1 396 4.2E-131 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 Pfam PF00067 Cytochrome P450 47 267 1.0E-15 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 Pfam PF00067 Cytochrome P450 272 366 5.9E-19 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 342 351 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 147 162 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 274 285 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 84 95 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 193 215 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 349 360 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 319 334 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 291 318 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 340 349 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00359 B-class P450 signature 130 146 4.3E-58 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00385 P450 superfamily signature 349 360 4.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00385 P450 superfamily signature 274 285 4.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00385 P450 superfamily signature 239 256 4.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_17185 0f997b18ed64fadd9fc0a38715ec5618 396 PRINTS PR00385 P450 superfamily signature 340 349 4.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 Pfam PF13377 Periplasmic binding protein-like domain 165 321 7.3E-27 T 13-10-2018 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 SMART SM00354 1 71 1.0E-28 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 Gene3D G3DSA:3.40.50.2300 62 301 3.0E-55 T 13-10-2018 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 Gene3D G3DSA:3.40.50.2300 156 283 3.0E-55 T 13-10-2018 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 SUPERFAMILY SSF47413 1 59 1.35E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 6.0E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 6.0E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 SUPERFAMILY SSF53822 61 321 1.16E-55 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_16260 053e862a1d84e8f14ed7f06336982894 321 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.9E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_16260 053e862a1d84e8f14ed7f06336982894 321 Gene3D G3DSA:1.10.260.40 1 58 1.1E-19 T 13-10-2018 RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 SUPERFAMILY SSF47384 339 422 7.65E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 SMART SM00387 470 580 6.2E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 471 578 8.8E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 SMART SM00388 356 424 8.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 Gene3D G3DSA:3.30.565.10 426 580 1.3E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 Pfam PF00512 His Kinase A (phospho-acceptor) domain 357 417 2.5E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 SUPERFAMILY SSF55874 414 577 3.67E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 521 2.4E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 535 2.4E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 559 2.4E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05845 e75b0c5996deb27540e0273e54156fd1 580 Gene3D G3DSA:1.10.287.130 331 421 1.1E-12 T 13-10-2018 RA13_00190 585865ab2c8519b2d8367dff7fea5cc7 72 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 47 4.3E-17 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RA13_00190 585865ab2c8519b2d8367dff7fea5cc7 72 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 71 16.905 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RA13_00190 585865ab2c8519b2d8367dff7fea5cc7 72 Pfam PF02416 mttA/Hcf106 family 5 56 2.8E-21 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RA13_00190 585865ab2c8519b2d8367dff7fea5cc7 72 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 22 41 1.6E-5 T 13-10-2018 RA13_00190 585865ab2c8519b2d8367dff7fea5cc7 72 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 2 22 1.6E-5 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SUPERFAMILY SSF50249 256 345 4.05E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Gene3D G3DSA:2.40.50.140 95 180 4.8E-11 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SUPERFAMILY SSF50249 88 170 8.95E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Pfam PF00575 S1 RNA binding domain 13 83 9.4E-16 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Pfam PF00575 S1 RNA binding domain 98 167 1.4E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Pfam PF00575 S1 RNA binding domain 269 342 1.1E-23 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Pfam PF00575 S1 RNA binding domain 185 256 4.0E-27 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Gene3D G3DSA:2.40.50.140 10 94 5.0E-14 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SMART SM00316 14 84 3.2E-13 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SMART SM00316 100 167 6.0E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SMART SM00316 271 342 1.3E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SMART SM00316 186 256 1.5E-29 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 325 343 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 81 100 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 105 121 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 286 305 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 151 171 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 208 229 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 122 139 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 PRINTS PR00681 Ribosomal protein S1 signature 16 34 2.1E-49 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Gene3D G3DSA:2.40.50.140 183 265 2.0E-30 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 Gene3D G3DSA:2.40.50.140 267 351 3.2E-28 T 13-10-2018 RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SUPERFAMILY SSF50249 10 109 2.86E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_10975 f09c1a5325e48c2dd46cf627418ce5c0 382 SUPERFAMILY SSF50249 185 273 9.61E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_04695 1ad37aa58071ba517a3b29f6a621c323 379 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 25 363 9.7E-120 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RA13_04695 1ad37aa58071ba517a3b29f6a621c323 379 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 366 1.7E-172 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 RA13_04695 1ad37aa58071ba517a3b29f6a621c323 379 Gene3D G3DSA:3.40.50.2000 191 351 7.1E-154 T 13-10-2018 RA13_04695 1ad37aa58071ba517a3b29f6a621c323 379 SUPERFAMILY SSF53756 3 366 1.67E-136 T 13-10-2018 RA13_04695 1ad37aa58071ba517a3b29f6a621c323 379 Gene3D G3DSA:3.40.50.2000 6 361 7.1E-154 T 13-10-2018 RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 Gene3D G3DSA:1.10.12.10 202 250 3.0E-20 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 SUPERFAMILY SSF52096 4 256 3.56E-82 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 Gene3D G3DSA:3.90.226.10 512 775 3.6E-81 T 13-10-2018 RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 Gene3D G3DSA:3.90.226.10 5 201 1.0E-73 T 13-10-2018 RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 Gene3D G3DSA:3.90.226.10 251 511 6.1E-79 T 13-10-2018 RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 Pfam PF01039 Carboxyl transferase domain 293 773 6.2E-164 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 253 1.0E-64 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 SUPERFAMILY SSF52096 478 756 3.26E-81 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_12625 6f327f14e1a3de7c00da5e9537b483c9 776 SUPERFAMILY SSF52096 274 516 3.27E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_17685 1f2c9c282240fe63685883fc2707e4ab 59 Pfam PF14168 YjzC-like protein 1 55 1.2E-28 T 13-10-2018 IPR025549 YjzC-like protein RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 43 8.0E-9 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 13-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 Gene3D G3DSA:1.20.5.1150 16 56 1.7E-18 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 Pfam PF01165 Ribosomal protein S21 5 57 2.5E-21 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 3 56 2.4E-21 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09600 14b9659fd5d60c2bb9b0636536514cb6 57 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.664 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09835 5b188c60ca2053912f17ef239f8d2b02 294 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 8 284 3.5E-80 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RA13_09835 5b188c60ca2053912f17ef239f8d2b02 294 Gene3D G3DSA:1.10.3720.10 57 287 8.2E-35 T 13-10-2018 IPR035906 MetI-like superfamily RA13_09835 5b188c60ca2053912f17ef239f8d2b02 294 SUPERFAMILY SSF161098 16 277 4.06E-40 T 13-10-2018 IPR035906 MetI-like superfamily RA13_09835 5b188c60ca2053912f17ef239f8d2b02 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 292 6.8E-55 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_04660 0e0e889bf23ae398decdc623d636f285 256 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 55 230 1.8E-70 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 RA13_04660 0e0e889bf23ae398decdc623d636f285 256 Hamap MF_02070 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase. 2 239 55.704 T 13-10-2018 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase GO:0047244 MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 RA13_04660 0e0e889bf23ae398decdc623d636f285 256 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 60 224 6.0E-60 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 Gene3D G3DSA:3.40.50.12740 2 210 1.5E-70 T 13-10-2018 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 SUPERFAMILY SSF52172 2 131 2.28E-31 T 13-10-2018 IPR011006 CheY-like superfamily RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 4.9E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 SMART SM00448 2 115 3.3E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 SMART SM00421 147 204 2.6E-29 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 SUPERFAMILY SSF46894 136 210 9.52E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 9.8E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 9.8E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 9.8E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 Pfam PF00072 Response regulator receiver domain 4 115 5.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05910 4f7c40c2e3f7e04ce7898c13e5d90fe5 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 84 97 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 SUPERFAMILY SSF56655 3 258 2.88E-78 T 13-10-2018 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 Gene3D G3DSA:3.30.540.10 1 144 4.6E-46 T 13-10-2018 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 Pfam PF00459 Inositol monophosphatase family 5 256 1.8E-69 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 1.3E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 179 200 1.3E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 133 156 1.3E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.3E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.3E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 1.3E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_15845 ba4986bcfbe04cb6ff192ef00b05618a 265 Gene3D G3DSA:3.40.190.80 145 264 1.2E-34 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:1.10.1200.10 2406 2491 4.5E-19 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:1.10.1200.10 3444 3528 2.3E-22 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 1736 1772 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 924 1041 3.8E-42 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SMART SM00825 Beta-ketoacyl synthase 671 1094 1.6E-180 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2974 3371 3.8E-136 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 669 916 2.8E-69 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.40.50.12780 1 448 6.0E-121 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00202 Aminotransferase class-III 1535 1896 3.0E-54 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.40.47.10 670 1263 2.9E-223 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.300.30 449 553 6.2E-28 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.559.10 2506 2862 2.1E-131 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF47336 1290 1375 3.8E-15 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF13193 AMP-binding enzyme C-terminal domain 3355 3428 4.9E-10 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF52777 2506 2668 7.23E-36 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3092 3103 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF52777 1952 2126 3.11E-40 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 833 849 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.559.30 2139 2388 5.1E-38 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.40.50.12780 2940 3341 1.2E-127 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 ProSitePatterns PS00455 Putative AMP-binding domain signature. 169 180 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 1044 1149 7.7E-18 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF53383 1512 1925 2.82E-88 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF47336 2410 2483 8.64E-14 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 ProSitePatterns PS00012 Phosphopantetheine attachment site. 3479 3494 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00550 Phosphopantetheine attachment site 587 649 2.4E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00550 Phosphopantetheine attachment site 3457 3519 3.1E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00550 Phosphopantetheine attachment site 1295 1360 2.3E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00550 Phosphopantetheine attachment site 2419 2483 1.9E-8 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:1.10.1200.10 575 659 3.9E-16 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF52777 3543 3705 4.45E-43 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.559.30 3709 3955 2.1E-142 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.300.30 3342 3443 2.6E-33 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF47336 3448 3518 3.93E-17 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:1.10.1200.10 1285 1392 9.8E-15 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00668 Condensation domain 3540 3960 3.4E-120 T 13-10-2018 IPR001242 Condensation domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00668 Condensation domain 1948 2385 6.9E-77 T 13-10-2018 IPR001242 Condensation domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00668 Condensation domain 2502 2933 2.8E-114 T 13-10-2018 IPR001242 Condensation domain RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF52777 3711 3955 4.67E-57 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SMART SM00823 Phosphopantetheine attachment site 3455 3524 0.0014 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SMART SM00823 Phosphopantetheine attachment site 585 653 1.7E-5 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SMART SM00823 Phosphopantetheine attachment site 1292 1364 4.9E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF47336 579 682 4.45E-14 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.559.30 2672 2917 2.1E-131 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF52777 2675 2940 2.22E-60 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF52777 2133 2369 2.33E-36 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF56801 2910 3468 8.9E-154 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF53901 666 1042 2.18E-85 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00501 AMP-binding enzyme 2953 3347 4.3E-98 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Pfam PF00501 AMP-binding enzyme 30 453 2.3E-71 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.559.10 3541 3899 2.1E-142 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.40.640.10 1571 1838 3.4E-120 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.70.3050 1148 1252 2.9E-223 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 SUPERFAMILY SSF56801 5 554 2.09E-99 T 13-10-2018 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.30.559.10 1944 2138 2.9E-46 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12435 954c4383d5b15258bb8e50399274e210 3978 Gene3D G3DSA:3.90.1150.10 1518 1919 3.4E-120 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_20530 1afc88a4a383f97f177b77cb72d0b8a0 137 Gene3D G3DSA:3.10.450.50 1 117 6.5E-6 T 13-10-2018 RA13_20530 1afc88a4a383f97f177b77cb72d0b8a0 137 SUPERFAMILY SSF54427 5 113 8.44E-8 T 13-10-2018 IPR032710 NTF2-like domain superfamily RA13_20160 e3cb4d4e58d6d559336a5d8265718fe5 84 SUPERFAMILY SSF82697 1 80 9.42E-30 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20160 e3cb4d4e58d6d559336a5d8265718fe5 84 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 78 22.007 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20160 e3cb4d4e58d6d559336a5d8265718fe5 84 Gene3D G3DSA:3.30.1280.10 1 84 2.1E-38 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20160 e3cb4d4e58d6d559336a5d8265718fe5 84 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 2 80 1.5E-37 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20160 e3cb4d4e58d6d559336a5d8265718fe5 84 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 9 80 3.0E-34 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20160 e3cb4d4e58d6d559336a5d8265718fe5 84 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 3 78 7.4E-33 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_05195 0c477f17153e076a4abb2aebf78fca43 191 Pfam PF03641 Possible lysine decarboxylase 46 176 1.0E-42 T 13-10-2018 IPR031100 LOG family RA13_05195 0c477f17153e076a4abb2aebf78fca43 191 Gene3D G3DSA:3.40.50.450 1 191 9.7E-78 T 13-10-2018 RA13_05195 0c477f17153e076a4abb2aebf78fca43 191 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 2 179 7.1E-81 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RA13_05195 0c477f17153e076a4abb2aebf78fca43 191 SUPERFAMILY SSF102405 1 179 8.7E-58 T 13-10-2018 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 Gene3D G3DSA:3.40.50.12740 2 197 1.1E-59 T 13-10-2018 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 1.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 1.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 1.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 190 7.5E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 SUPERFAMILY SSF46894 121 198 1.46E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 SMART SM00421 135 192 3.3E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 SUPERFAMILY SSF52172 1 129 2.56E-29 T 13-10-2018 IPR011006 CheY-like superfamily RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 Pfam PF00072 Response regulator receiver domain 4 113 4.0E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_12295 ba1ccb3a45acf8321d86dad0901c8909 199 SMART SM00448 2 113 2.3E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_12190 9f840637127f50ad89d33336597cb365 418 SUPERFAMILY SSF54106 159 202 5.36E-10 T 13-10-2018 RA13_12190 9f840637127f50ad89d33336597cb365 418 Gene3D G3DSA:3.90.1720.10 295 418 2.4E-32 T 13-10-2018 RA13_12190 9f840637127f50ad89d33336597cb365 418 SUPERFAMILY SSF54106 27 71 1.7E-9 T 13-10-2018 RA13_12190 9f840637127f50ad89d33336597cb365 418 Gene3D G3DSA:3.10.350.10 156 210 9.3E-17 T 13-10-2018 IPR036779 LysM domain superfamily RA13_12190 9f840637127f50ad89d33336597cb365 418 Gene3D G3DSA:3.10.350.10 226 280 6.6E-18 T 13-10-2018 IPR036779 LysM domain superfamily RA13_12190 9f840637127f50ad89d33336597cb365 418 Gene3D G3DSA:3.10.350.10 85 140 1.9E-18 T 13-10-2018 IPR036779 LysM domain superfamily RA13_12190 9f840637127f50ad89d33336597cb365 418 Gene3D G3DSA:3.10.350.10 25 78 1.1E-14 T 13-10-2018 IPR036779 LysM domain superfamily RA13_12190 9f840637127f50ad89d33336597cb365 418 Pfam PF00877 NlpC/P60 family 315 415 5.7E-28 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_12190 9f840637127f50ad89d33336597cb365 418 SUPERFAMILY SSF54001 299 417 2.6E-32 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_12190 9f840637127f50ad89d33336597cb365 418 Pfam PF01476 LysM domain 231 272 4.6E-15 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 Pfam PF01476 LysM domain 161 202 6.0E-13 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 Pfam PF01476 LysM domain 30 71 1.2E-12 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 Pfam PF01476 LysM domain 90 132 1.5E-13 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 SUPERFAMILY SSF54106 89 131 9.16E-11 T 13-10-2018 RA13_12190 9f840637127f50ad89d33336597cb365 418 SMART SM00257 230 273 4.7E-18 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 SMART SM00257 89 132 2.2E-14 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 SMART SM00257 160 203 7.1E-16 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 SMART SM00257 28 71 2.0E-16 T 13-10-2018 IPR018392 LysM domain RA13_12190 9f840637127f50ad89d33336597cb365 418 SUPERFAMILY SSF54106 228 273 8.24E-12 T 13-10-2018 RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 Gene3D G3DSA:2.40.50.140 3 76 1.2E-15 T 13-10-2018 RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 Gene3D G3DSA:3.30.60.100 146 181 1.0E-19 T 13-10-2018 RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 243 3.1E-87 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 SUPERFAMILY SSF57863 80 231 1.33E-47 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 Hamap MF_00201 DNA repair protein RecO [recO]. 1 243 30.812 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 Gene3D G3DSA:1.20.1440.120 88 225 1.0E-19 T 13-10-2018 RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 SUPERFAMILY SSF50249 1 75 7.37E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 Pfam PF11967 Recombination protein O N terminal 1 76 1.0E-26 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal RA13_09690 55f048b8c5b391e7983345bbe9c022c7 255 Pfam PF02565 Recombination protein O C terminal 82 238 2.0E-42 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 350 487 3.0E-24 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Gene3D G3DSA:1.10.8.60 490 582 1.8E-33 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 SUPERFAMILY SSF54211 593 768 1.06E-56 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Gene3D G3DSA:3.40.50.300 312 489 3.8E-69 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 PIRSF PIRSF001174 1 773 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 9 199 5.5E-41 T 13-10-2018 IPR003111 Lon, substrate-binding domain RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 568 770 9.2E-99 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Gene3D G3DSA:2.30.130.40 1 115 5.1E-32 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 SUPERFAMILY SSF88697 9 199 5.47E-45 T 13-10-2018 IPR015947 PUA-like superfamily RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 674 682 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 SMART SM00464 8 200 4.8E-77 T 13-10-2018 IPR003111 Lon, substrate-binding domain RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 SMART SM00382 346 491 2.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 SUPERFAMILY SSF52540 311 586 6.21E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Gene3D G3DSA:3.30.230.10 591 774 3.3E-87 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 TIGRFAM TIGR00763 lon: endopeptidase La 10 769 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 701 720 3.1E-54 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 724 742 3.1E-54 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 671 690 3.1E-54 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 593 609 3.1E-54 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 354 373 3.1E-54 T 13-10-2018 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Hamap MF_01973 Lon protease [lon]. 9 770 73.333 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RA13_08630 428bbfdbb601c7d470edfe5f5486231b 774 Gene3D G3DSA:1.20.58.1480 119 243 2.1E-43 T 13-10-2018 RA13_16470 bfa194edd00af51b7f38676e45f37183 233 Pfam PF08876 Domain of unknown function (DUF1836) 63 158 4.8E-19 T 13-10-2018 IPR014975 Protein of unknown function DUF1836 RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SUPERFAMILY SSF51126 79 368 2.2E-32 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 Gene3D G3DSA:4.10.80.40 692 734 4.8E-59 T 13-10-2018 RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 Gene3D G3DSA:2.160.20.10 77 527 6.2E-124 T 13-10-2018 IPR012334 Pectin lyase fold RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 Gene3D G3DSA:2.40.300.10 640 803 4.8E-59 T 13-10-2018 RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 Pfam PF12708 Pectate lyase superfamily protein 82 302 7.0E-21 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 Pfam PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain 593 806 1.5E-78 T 13-10-2018 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SMART SM00710 495 516 9800.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SMART SM00710 237 259 21.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SMART SM00710 294 315 3900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SMART SM00710 448 470 560.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SMART SM00710 199 221 120.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SMART SM00710 419 441 250.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_20545 4549e2a4d0e2436bd1e931270933905b 806 SMART SM00710 260 292 1300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_12300 cd311e05dae4ce4f1f3909c6bf0f5327 378 Pfam PF07730 Histidine kinase 179 242 5.1E-21 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RA13_12300 cd311e05dae4ce4f1f3909c6bf0f5327 378 SUPERFAMILY SSF55874 252 366 1.16E-10 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_12300 cd311e05dae4ce4f1f3909c6bf0f5327 378 Gene3D G3DSA:3.30.565.10 243 370 2.3E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Pfam PF00384 Molybdopterin oxidoreductase 314 737 4.4E-83 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 PIRSF PIRSF036643 1 964 0.0 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Gene3D G3DSA:3.10.20.740 4 124 1.1E-23 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 190 201 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 SMART SM00926 257 311 1.2E-16 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 262 930 1.8E-259 T 13-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 SUPERFAMILY SSF53706 251 775 1.05E-195 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Gene3D G3DSA:2.40.40.20 811 938 6.6E-28 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 SUPERFAMILY SSF54292 5 73 1.74E-11 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 257 311 1.2E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 SUPERFAMILY SSF54862 76 210 2.8E-29 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Pfam PF12838 4Fe-4S dicluster domain 146 204 4.2E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Gene3D G3DSA:2.20.25.90 257 312 1.8E-19 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 SUPERFAMILY SSF50692 794 932 2.71E-33 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 SMART SM00929 83 124 2.2E-7 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 87 122 2.0E-7 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Gene3D G3DSA:3.40.228.10 392 591 1.0E-169 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Gene3D G3DSA:3.40.50.740 319 780 1.0E-169 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 6 74 7.6E-8 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Gene3D G3DSA:3.30.70.20 125 208 4.2E-21 T 13-10-2018 RA13_17210 487e8f98cb537d1b6bed30cf1388df36 984 Pfam PF01568 Molydopterin dinucleotide binding domain 822 927 2.4E-20 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RA13_15055 6d24451d64ef9db9dcdd10501fc64dd4 199 Gene3D G3DSA:1.25.60.10 128 198 3.6E-6 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily RA13_15055 6d24451d64ef9db9dcdd10501fc64dd4 199 SUPERFAMILY SSF158791 132 188 3.27E-7 T 13-10-2018 RA13_15055 6d24451d64ef9db9dcdd10501fc64dd4 199 Pfam PF03448 MgtE intracellular N domain 135 192 4.0E-7 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RA13_13520 81671e99ba65663f45f357ceb019bf12 158 Gene3D G3DSA:3.40.220.10 1 158 9.0E-38 T 13-10-2018 RA13_13520 81671e99ba65663f45f357ceb019bf12 158 SUPERFAMILY SSF52949 1 156 1.36E-30 T 13-10-2018 RA13_13520 81671e99ba65663f45f357ceb019bf12 158 SMART SM00506 1 143 1.2E-6 T 13-10-2018 IPR002589 Macro domain RA13_08110 99bc56f78013446d838d562718226f13 127 Pfam PF04186 FxsA cytoplasmic membrane protein 6 113 1.7E-33 T 13-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 RA13_10995 8b60c91c0dd23a226d569a2c6c7a90a5 297 Pfam PF14045 YIEGIA protein 8 287 4.2E-127 T 13-10-2018 IPR025918 YIEGIA protein RA13_10995 8b60c91c0dd23a226d569a2c6c7a90a5 297 ProDom PD128584 YPHB BH1976 TRANSMEMBRANE MEMBRANE SEAA 1 280 3.0E-134 T 13-10-2018 RA13_07875 5bdecc6041f8975ddf85a9729b1a2c91 312 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 117 8.3E-20 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_07875 5bdecc6041f8975ddf85a9729b1a2c91 312 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 156 266 3.0E-15 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_07875 5bdecc6041f8975ddf85a9729b1a2c91 312 Gene3D G3DSA:3.10.180.10 67 210 9.9E-123 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_07875 5bdecc6041f8975ddf85a9729b1a2c91 312 Gene3D G3DSA:3.10.180.10 7 302 9.9E-123 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_07875 5bdecc6041f8975ddf85a9729b1a2c91 312 SUPERFAMILY SSF54593 5 281 2.21E-47 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 Pfam PF07690 Major Facilitator Superfamily 16 352 1.4E-53 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 ProSitePatterns PS00216 Sugar transport proteins signature 1. 65 81 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 Gene3D G3DSA:1.20.1250.20 2 393 7.9E-75 T 13-10-2018 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 TIGRFAM TIGR00880 2_A_01_02: multidrug resistance protein 48 186 1.5E-41 T 13-10-2018 IPR004734 Multidrug resistance protein GO:0015238|GO:0015893|GO:0016021 Reactome: R-HSA-442660 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 PRINTS PR01035 Tetracycline resistance protein signature 164 184 2.7E-20 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 PRINTS PR01035 Tetracycline resistance protein signature 253 273 2.7E-20 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 PRINTS PR01035 Tetracycline resistance protein signature 136 158 2.7E-20 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 PRINTS PR01035 Tetracycline resistance protein signature 341 364 2.7E-20 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 PRINTS PR01035 Tetracycline resistance protein signature 21 37 2.7E-20 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_20745 c437d19d6c7c76da229d11ed095e6e90 400 SUPERFAMILY SSF103473 7 392 7.98E-77 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_01140 53a18ff9d6ebf956849412485e10a608 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 179 206 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 PIRSF PIRSF002939 3 218 2.2E-110 T 13-10-2018 IPR016371 RNA polymerase sigma-H factor GO:0003677|GO:0006351|GO:0016987 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 TIGRFAM TIGR02859 spore_sigH: RNA polymerase sigma-H factor 16 212 1.1E-110 T 13-10-2018 IPR014218 RNA polymerase sigma-H type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 Pfam PF08281 Sigma-70, region 4 164 207 3.4E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 62 75 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 SUPERFAMILY SSF88946 20 107 9.55E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 Pfam PF04542 Sigma-70 region 2 38 107 2.0E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 211 7.7E-28 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_01140 53a18ff9d6ebf956849412485e10a608 218 SUPERFAMILY SSF88659 125 211 3.79E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_19655 5cd5d64ec69f0b31c829bb09d545e3e4 333 Pfam PF01032 FecCD transport family 21 326 4.5E-98 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_19655 5cd5d64ec69f0b31c829bb09d545e3e4 333 Gene3D G3DSA:1.10.3470.10 1 329 4.0E-101 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_19655 5cd5d64ec69f0b31c829bb09d545e3e4 333 SUPERFAMILY SSF81345 5 326 4.84E-88 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_05625 dbe73fbea0d370dda19a5c8ddeced945 248 PIRSF PIRSF017388 3 248 9.2E-98 T 13-10-2018 IPR012354 Esterase/lipase GO:0052689 RA13_05625 dbe73fbea0d370dda19a5c8ddeced945 248 SUPERFAMILY SSF53474 6 246 3.94E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_05625 dbe73fbea0d370dda19a5c8ddeced945 248 Gene3D G3DSA:3.40.50.1820 2 248 3.2E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_05625 dbe73fbea0d370dda19a5c8ddeced945 248 Pfam PF12146 Serine aminopeptidase, S33 18 231 1.4E-15 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RA13_17160 16ca22542356227130aba577a9ca6a23 272 SUPERFAMILY SSF69618 7 267 1.7E-53 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_17160 16ca22542356227130aba577a9ca6a23 272 Gene3D G3DSA:3.40.50.10090 38 174 1.0E-76 T 13-10-2018 RA13_17160 16ca22542356227130aba577a9ca6a23 272 Gene3D G3DSA:3.40.50.10090 14 258 1.0E-76 T 13-10-2018 RA13_17160 16ca22542356227130aba577a9ca6a23 272 Pfam PF02602 Uroporphyrinogen-III synthase HemD 20 259 1.5E-35 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 PIRSF PIRSF000915 1 256 3.4E-60 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 TIGRFAM TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family 4 252 2.3E-138 T 13-10-2018 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 8 228 1.0E-41 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 Gene3D G3DSA:3.40.50.1000 84 179 7.0E-92 T 13-10-2018 IPR023214 HAD superfamily RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 Pfam PF13242 HAD-hyrolase-like 179 251 2.2E-22 T 13-10-2018 RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 Gene3D G3DSA:3.40.50.1000 5 230 7.0E-92 T 13-10-2018 IPR023214 HAD superfamily RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 Pfam PF13344 Haloacid dehalogenase-like hydrolase 8 106 8.5E-29 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RA13_06345 1a348b125d1ac00e4edf391e96ed2388 256 SUPERFAMILY SSF56784 4 253 4.33E-76 T 13-10-2018 IPR036412 HAD-like superfamily RA13_06575 511cf748ccfe53c216a33155becbdf6a 176 Pfam PF01966 HD domain 25 137 4.3E-15 T 13-10-2018 IPR006674 HD domain RA13_06575 511cf748ccfe53c216a33155becbdf6a 176 SUPERFAMILY SSF109604 17 137 1.96E-20 T 13-10-2018 RA13_06575 511cf748ccfe53c216a33155becbdf6a 176 SMART SM00471 19 148 5.5E-8 T 13-10-2018 IPR003607 HD/PDEase domain RA13_06575 511cf748ccfe53c216a33155becbdf6a 176 TIGRFAM TIGR00277 HDIG: HDIG domain 22 91 9.8E-8 T 13-10-2018 IPR006675 HDIG domain RA13_06575 511cf748ccfe53c216a33155becbdf6a 176 Gene3D G3DSA:1.10.3210.10 7 167 1.1E-16 T 13-10-2018 RA13_21790 5a7ca71e59511cbaf1952fdd896482d6 402 Gene3D G3DSA:1.20.1250.20 6 189 2.5E-41 T 13-10-2018 RA13_21790 5a7ca71e59511cbaf1952fdd896482d6 402 Gene3D G3DSA:1.20.1250.20 194 397 2.4E-52 T 13-10-2018 RA13_21790 5a7ca71e59511cbaf1952fdd896482d6 402 Pfam PF07690 Major Facilitator Superfamily 19 350 9.0E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_21790 5a7ca71e59511cbaf1952fdd896482d6 402 TIGRFAM TIGR00886 2A0108: nitrite transporter 14 346 3.3E-99 T 13-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 RA13_21790 5a7ca71e59511cbaf1952fdd896482d6 402 SUPERFAMILY SSF103473 9 390 2.75E-64 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 948 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Gene3D G3DSA:3.30.470.20 119 401 2.9E-121 T 13-10-2018 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 706 720 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 832 839 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Gene3D G3DSA:3.30.1490.20 683 750 1.5E-84 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Gene3D G3DSA:3.30.470.20 664 922 1.5E-84 T 13-10-2018 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 670 868 3.2E-35 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 3.2E-81 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 SUPERFAMILY SSF56059 670 923 1.35E-78 T 13-10-2018 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 SUPERFAMILY SSF48108 394 547 4.32E-45 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 SMART SM01096 420 542 2.9E-61 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Gene3D G3DSA:1.10.1030.10 416 547 3.2E-43 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1017 12.405 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 SUPERFAMILY SSF52440 1 127 2.88E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 SUPERFAMILY SSF56059 128 399 6.72E-107 T 13-10-2018 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 426 542 1.2E-40 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Gene3D G3DSA:3.40.50.20 550 658 2.1E-42 T 13-10-2018 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 Gene3D G3DSA:3.40.50.20 1 116 1.4E-45 T 13-10-2018 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 2.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 2.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 2.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 2.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 2.4E-61 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17695 5ec1a82d01efc7b5c53fc6f41f110f90 1030 SUPERFAMILY SSF52440 554 672 1.58E-44 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_19585 a5cb625817aecd65958f250e414baf5f 90 Gene3D G3DSA:3.30.70.100 1 90 6.5E-35 T 13-10-2018 RA13_19585 a5cb625817aecd65958f250e414baf5f 90 Pfam PF00708 Acylphosphatase 4 88 2.7E-27 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RA13_19585 a5cb625817aecd65958f250e414baf5f 90 SUPERFAMILY SSF54975 1 89 3.49E-27 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RA13_19585 a5cb625817aecd65958f250e414baf5f 90 ProSitePatterns PS00151 Acylphosphatase signature 2. 32 48 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 330 349 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 76 101 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 357 377 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 2 22 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 195 214 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 225 244 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 46 66 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 1.4E-45 T 13-10-2018 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 298 321 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 Pfam PF00375 Sodium:dicarboxylate symporter family 8 403 6.5E-126 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 38 53 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 SUPERFAMILY SSF118215 8 404 3.92E-123 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_18200 2989f6625cf5e23ab4a59deb077942e6 429 Gene3D G3DSA:1.10.3860.10 1 420 2.7E-136 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 3.6E-37 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 218 2.4E-26 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 Gene3D G3DSA:1.20.140.10 235 380 3.1E-57 T 13-10-2018 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 SUPERFAMILY SSF47203 230 380 1.16E-58 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 379 1.1E-51 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 Gene3D G3DSA:1.10.540.10 1 120 3.5E-43 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 SUPERFAMILY SSF56645 1 243 1.31E-83 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 Gene3D G3DSA:2.40.110.10 122 234 7.4E-40 T 13-10-2018 RA13_12600 0a0ef58971d805c1398deb48d08b8420 380 PIRSF PIRSF016578 3 380 2.2E-26 T 13-10-2018 RA13_11320 42a261053e6c1854bb90ec584065292f 168 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 82 94 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_11320 42a261053e6c1854bb90ec584065292f 168 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 19 142 1.1E-51 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_11320 42a261053e6c1854bb90ec584065292f 168 SUPERFAMILY SSF51261 13 153 7.32E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_11320 42a261053e6c1854bb90ec584065292f 168 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 20 140 1.1E-44 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_11320 42a261053e6c1854bb90ec584065292f 168 Gene3D G3DSA:2.70.70.10 9 167 1.9E-58 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_20430 71a028c3fc93912821380096b4f59937 643 SUPERFAMILY SSF52540 4 244 1.0E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20430 71a028c3fc93912821380096b4f59937 643 Pfam PF00005 ABC transporter 19 191 1.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_20430 71a028c3fc93912821380096b4f59937 643 SMART SM00382 28 245 3.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_20430 71a028c3fc93912821380096b4f59937 643 SMART SM00382 352 518 6.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_20430 71a028c3fc93912821380096b4f59937 643 ProSitePatterns PS00211 ABC transporters family signature. 445 459 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_20430 71a028c3fc93912821380096b4f59937 643 Pfam PF00005 ABC transporter 344 473 8.1E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_20430 71a028c3fc93912821380096b4f59937 643 Pfam PF12848 ABC transporter 231 316 9.6E-25 T 13-10-2018 IPR032781 ABC-transporter extension domain RA13_20430 71a028c3fc93912821380096b4f59937 643 SUPERFAMILY SSF52540 311 534 2.81E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20430 71a028c3fc93912821380096b4f59937 643 Gene3D G3DSA:1.10.287.380 556 642 1.2E-5 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RA13_20430 71a028c3fc93912821380096b4f59937 643 Gene3D G3DSA:3.40.50.300 1 285 3.6E-68 T 13-10-2018 RA13_20430 71a028c3fc93912821380096b4f59937 643 Pfam PF16326 ABC transporter C-terminal domain 562 639 2.4E-11 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RA13_20430 71a028c3fc93912821380096b4f59937 643 Gene3D G3DSA:3.40.50.300 289 553 2.4E-64 T 13-10-2018 RA13_20430 71a028c3fc93912821380096b4f59937 643 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 Pfam PF00248 Aldo/keto reductase family 19 262 1.2E-43 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_00525 b207c43662f65eac2808cb777eddb15b 280 PIRSF PIRSF000097 1 278 1.1E-78 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 PRINTS PR00069 Aldo-keto reductase signature 198 222 4.6E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 PRINTS PR00069 Aldo-keto reductase signature 126 143 4.6E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 PRINTS PR00069 Aldo-keto reductase signature 38 62 4.6E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 PRINTS PR00069 Aldo-keto reductase signature 94 112 4.6E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 PRINTS PR00069 Aldo-keto reductase signature 160 189 4.6E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 42 59 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 231 246 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_00525 b207c43662f65eac2808cb777eddb15b 280 SUPERFAMILY SSF51430 8 269 9.04E-84 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_00525 b207c43662f65eac2808cb777eddb15b 280 Gene3D G3DSA:3.20.20.100 1 277 1.6E-99 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_00525 b207c43662f65eac2808cb777eddb15b 280 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 126 143 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 586 604 1.5E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 615 633 1.5E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 541 559 1.5E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 648 662 1.5E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 714 793 5.0E-25 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Gene3D G3DSA:1.10.8.60 346 481 6.7E-54 T 13-10-2018 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Gene3D G3DSA:1.10.1780.10 1 150 6.9E-64 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Gene3D G3DSA:3.40.50.300 151 343 6.5E-72 T 13-10-2018 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Pfam PF02151 UvrB/uvrC motif 417 452 5.0E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 SMART SM01086 714 803 1.4E-35 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Gene3D G3DSA:4.10.860.10 409 467 6.7E-54 T 13-10-2018 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 SMART SM00382 200 343 1.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 SMART SM00382 537 681 3.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 2.1E-17 T 13-10-2018 IPR004176 Clp, N-terminal RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 143 2.0E-18 T 13-10-2018 IPR004176 Clp, N-terminal RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 295 307 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Gene3D G3DSA:3.40.50.300 489 712 1.5E-90 T 13-10-2018 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 205 317 1.6E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Gene3D G3DSA:1.10.8.60 714 810 1.6E-27 T 13-10-2018 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 571 589 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 Pfam PF07724 AAA domain (Cdc48 subfamily) 536 708 2.7E-57 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 SUPERFAMILY SSF52540 486 802 7.27E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 SUPERFAMILY SSF52540 161 468 1.97E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01200 6b7ca72a1e775b24f85f22bffdbd26e5 812 SUPERFAMILY SSF81923 5 149 8.63E-34 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Gene3D G3DSA:3.40.50.740 325 780 6.0E-164 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Gene3D G3DSA:2.40.40.20 821 944 2.4E-28 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 SMART SM00929 86 127 2.1E-14 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Pfam PF00384 Molybdopterin oxidoreductase 320 743 9.9E-87 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 SMART SM00926 263 317 9.7E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 125 7.9E-12 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Gene3D G3DSA:3.10.20.740 7 127 1.8E-30 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 PIRSF PIRSF036643 2 970 0.0 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Gene3D G3DSA:3.40.228.10 398 597 6.0E-164 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 268 936 2.4E-246 T 13-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 5 76 9.4E-15 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 196 207 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Gene3D G3DSA:2.20.25.90 263 318 4.6E-18 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Pfam PF01568 Molydopterin dinucleotide binding domain 826 933 3.8E-21 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Pfam PF12838 4Fe-4S dicluster domain 152 210 4.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 SUPERFAMILY SSF53706 257 787 9.16E-193 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 SUPERFAMILY SSF54292 7 129 2.42E-30 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 SUPERFAMILY SSF54862 139 220 2.05E-17 T 13-10-2018 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 SUPERFAMILY SSF50692 799 938 1.42E-34 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 264 317 2.0E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_09190 2ab71d609602e82d47f33b5ae20d95d6 980 Gene3D G3DSA:3.30.70.20 131 214 2.8E-20 T 13-10-2018 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 Gene3D G3DSA:3.90.190.20 312 455 3.2E-44 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 SUPERFAMILY SSF53244 314 452 3.3E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 Gene3D G3DSA:3.40.1390.10 2 81 4.7E-20 T 13-10-2018 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 Pfam PF08245 Mur ligase middle domain 111 292 7.7E-51 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 Pfam PF01225 Mur ligase family, catalytic domain 27 100 3.1E-8 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 392 8.1E-17 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 SUPERFAMILY SSF53623 107 310 4.32E-55 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 Gene3D G3DSA:3.40.1190.10 87 309 4.5E-69 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 453 34.685 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 32 452 3.8E-143 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21075 b47ab6e3106d3591d7192aad91e4d8d4 455 SUPERFAMILY SSF63418 4 102 2.09E-22 T 13-10-2018 IPR035911 MurE/MurF, N-terminal RA13_07710 032cb99bccf4e9e0c04dcce6e30867d7 309 SUPERFAMILY SSF111331 2 307 1.83E-58 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RA13_07710 032cb99bccf4e9e0c04dcce6e30867d7 309 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 308 2.2E-105 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase RA13_07710 032cb99bccf4e9e0c04dcce6e30867d7 309 Gene3D G3DSA:2.60.200.40 136 299 3.5E-36 T 13-10-2018 RA13_07710 032cb99bccf4e9e0c04dcce6e30867d7 309 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 128 3.3E-25 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RA13_07710 032cb99bccf4e9e0c04dcce6e30867d7 309 Gene3D G3DSA:3.40.50.10330 1 129 1.4E-27 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.695 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 PIRSF PIRSF002134 1 121 8.4E-42 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.2E-33 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 Gene3D G3DSA:4.10.910.10 72 121 7.2E-25 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 Gene3D G3DSA:1.10.8.50 1 71 3.0E-29 T 13-10-2018 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 SUPERFAMILY SSF46946 2 114 3.66E-45 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RA13_00920 df5117f381d14ae80225d4618259b7fc 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 1.8E-52 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03175 345a7a9d406a90ef82a52b0ae1ba926d 400 PRINTS PR01035 Tetracycline resistance protein signature 345 368 2.4E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03175 345a7a9d406a90ef82a52b0ae1ba926d 400 PRINTS PR01035 Tetracycline resistance protein signature 114 135 2.4E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03175 345a7a9d406a90ef82a52b0ae1ba926d 400 PRINTS PR01035 Tetracycline resistance protein signature 54 73 2.4E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03175 345a7a9d406a90ef82a52b0ae1ba926d 400 PRINTS PR01035 Tetracycline resistance protein signature 173 193 2.4E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03175 345a7a9d406a90ef82a52b0ae1ba926d 400 SUPERFAMILY SSF103473 17 397 9.16E-50 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_03175 345a7a9d406a90ef82a52b0ae1ba926d 400 Pfam PF07690 Major Facilitator Superfamily 23 251 2.7E-24 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_03175 345a7a9d406a90ef82a52b0ae1ba926d 400 Gene3D G3DSA:1.20.1250.20 10 397 2.2E-50 T 13-10-2018 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 146 285 1.7E-22 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 71 80 2.8E-35 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 207 216 2.8E-35 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 33 55 2.8E-35 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 126 143 2.8E-35 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 270 284 2.8E-35 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00101 Aspartate carbamoyltransferase signature 246 251 2.8E-35 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 127 138 1.6E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 43 62 1.6E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 242 251 1.6E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 254 277 1.6E-24 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 2 288 1.0E-104 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 3 140 1.4E-43 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 43 50 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 SUPERFAMILY SSF53671 1 290 2.62E-94 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 291 39.096 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 Gene3D G3DSA:3.40.50.1370 127 268 2.1E-111 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RA13_15435 073dd2e084a01fb3a5218474afe7a86f 304 Gene3D G3DSA:3.40.50.1370 6 285 2.1E-111 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 SMART SM00642 219 613 9.8E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 SUPERFAMILY SSF51445 196 620 4.88E-125 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 Gene3D G3DSA:3.20.20.80 202 622 8.1E-184 T 13-10-2018 RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 TIGRFAM TIGR02104 pulA_typeI: pullulanase, type I 96 688 6.4E-254 T 13-10-2018 IPR011840 Pullulanase, type I RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 Gene3D G3DSA:2.60.40.2320 1 97 1.6E-30 T 13-10-2018 RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 106 182 1.1E-16 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 Gene3D G3DSA:2.60.40.10 98 201 3.7E-25 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 Pfam PF00128 Alpha amylase, catalytic domain 257 343 3.2E-6 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 Pfam PF00128 Alpha amylase, catalytic domain 375 576 1.4E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 SUPERFAMILY SSF81296 99 198 3.15E-21 T 13-10-2018 IPR014756 Immunoglobulin E-set RA13_07715 fa8be2b5df2692ea3fcd34ce48b0f835 710 Gene3D G3DSA:2.60.40.1180 623 710 1.3E-29 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RA13_19855 beefa076c6023597decd55a790d9e8f9 336 Pfam PF00248 Aldo/keto reductase family 28 329 8.6E-73 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_19855 beefa076c6023597decd55a790d9e8f9 336 Gene3D G3DSA:3.20.20.100 15 334 6.0E-111 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_19855 beefa076c6023597decd55a790d9e8f9 336 SUPERFAMILY SSF51430 13 329 2.62E-88 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 88 130 8.6E-16 T 13-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 130 2.7E-44 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 SUPERFAMILY SSF51344 3 84 2.22E-25 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 Gene3D G3DSA:2.60.15.10 1 88 1.6E-33 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 Gene3D G3DSA:1.20.5.440 89 131 1.4E-15 T 13-10-2018 RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 SUPERFAMILY SSF46604 87 130 8.89E-9 T 13-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 86 2.0E-37 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 82 2.5E-30 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04060 a31cdf94e9dc56eea5000c41915e8f3c 132 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 129 24.118 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_15460 90cc8d4980feb67093d8f065baf6ba5a 124 PIRSF PIRSF026544 1 124 1.9E-62 T 13-10-2018 IPR016841 Transcription regulator DksA-related, predicted RA13_15460 90cc8d4980feb67093d8f065baf6ba5a 124 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 73 97 - T 13-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RA13_15460 90cc8d4980feb67093d8f065baf6ba5a 124 Gene3D G3DSA:1.20.120.910 1 95 3.4E-11 T 13-10-2018 RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 Gene3D G3DSA:1.10.10.10 4 85 7.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 SUPERFAMILY SSF46785 87 160 1.06E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 PIRSF PIRSF019345 1 195 5.1E-55 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 Gene3D G3DSA:1.10.10.10 86 181 1.5E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 Hamap MF_01804 Segregation and condensation protein B [scpB]. 1 185 34.744 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 Pfam PF04079 Segregation and condensation complex subunit ScpB 10 169 3.9E-54 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 7 195 6.5E-76 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RA13_10815 e7289eb71b1a12cd13503440ef93a844 197 SUPERFAMILY SSF46785 2 83 7.71E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03555 1346f4f552616b275408d5a00d942866 456 Pfam PF00171 Aldehyde dehydrogenase family 12 428 9.3E-97 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_03555 1346f4f552616b275408d5a00d942866 456 Gene3D G3DSA:3.40.605.10 13 428 5.5E-176 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_03555 1346f4f552616b275408d5a00d942866 456 PIRSF PIRSF036492 1 456 1.6E-183 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RA13_03555 1346f4f552616b275408d5a00d942866 456 Gene3D G3DSA:3.40.309.10 213 408 5.5E-176 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_03555 1346f4f552616b275408d5a00d942866 456 SUPERFAMILY SSF53720 7 441 2.75E-128 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_03555 1346f4f552616b275408d5a00d942866 456 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 237 248 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_03555 1346f4f552616b275408d5a00d942866 456 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 209 216 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_18055 f8e59ae070c4560ec64a8c53c6eb8cb2 66 Pfam PF11755 Protein of unknown function (DUF3311) 6 64 1.0E-19 T 13-10-2018 IPR021741 Protein of unknown function DUF3311 RA13_08830 126088f0ea51ec8d20e8b67b2a822ff7 100 Gene3D G3DSA:3.40.50.2300 1 100 3.6E-37 T 13-10-2018 RA13_08830 126088f0ea51ec8d20e8b67b2a822ff7 100 SUPERFAMILY SSF52794 1 99 1.07E-35 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_08830 126088f0ea51ec8d20e8b67b2a822ff7 100 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 94 1.5E-23 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RA13_03310 d57024e94d43fe575291213391ef554e 450 Pfam PF02378 Phosphotransferase system, EIIC 29 359 2.4E-75 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_03310 d57024e94d43fe575291213391ef554e 450 PIRSF PIRSF006351 1 444 4.9E-153 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 RA13_03310 d57024e94d43fe575291213391ef554e 450 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 435 1.9E-205 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 RA13_03310 d57024e94d43fe575291213391ef554e 450 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 435 1.9E-205 T 13-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 RA13_21680 db35cc77e58a4d51f43fa4e213dc3c9a 121 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 115 1.9E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_21680 db35cc77e58a4d51f43fa4e213dc3c9a 121 Gene3D G3DSA:3.10.180.10 8 121 4.8E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_21680 db35cc77e58a4d51f43fa4e213dc3c9a 121 SUPERFAMILY SSF54593 4 120 8.99E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_07765 f45c7f3b6520c091f14cf3a6de55e1f4 269 Pfam PF07285 Protein of unknown function (DUF1444) 3 267 8.5E-130 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 RA13_07765 f45c7f3b6520c091f14cf3a6de55e1f4 269 PIRSF PIRSF012562 1 268 5.8E-139 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 RA13_07765 f45c7f3b6520c091f14cf3a6de55e1f4 269 Hamap MF_01548 UPF0354 protein . 3 268 47.608 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 RA13_06565 6791faf983c8637a1caaa6eb9ce4f969 164 Pfam PF17355 Family of unknown function (DUF5383) 35 157 6.7E-37 T 13-10-2018 IPR020212 ESX secretion system protein YueC RA13_06565 6791faf983c8637a1caaa6eb9ce4f969 164 TIGRFAM TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA 12 157 1.2E-42 T 13-10-2018 IPR018920 ESAT-6 secretion machinery protein EssA/YueC RA13_06565 6791faf983c8637a1caaa6eb9ce4f969 164 ProDom PD090911 YUEC MEMBRANE TRANSMEMBRANE 22 162 3.0E-38 T 13-10-2018 IPR020212 ESX secretion system protein YueC RA13_02695 8272a586da708cc9ed06bc22732b1c7a 312 SUPERFAMILY SSF100950 56 310 3.63E-74 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_02695 8272a586da708cc9ed06bc22732b1c7a 312 Pfam PF13384 Homeodomain-like domain 11 48 6.1E-7 T 13-10-2018 RA13_02695 8272a586da708cc9ed06bc22732b1c7a 312 Pfam PF04198 Putative sugar-binding domain 57 309 2.6E-81 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 RA13_02695 8272a586da708cc9ed06bc22732b1c7a 312 Gene3D G3DSA:1.10.10.60 1 52 4.7E-21 T 13-10-2018 RA13_02695 8272a586da708cc9ed06bc22732b1c7a 312 Gene3D G3DSA:3.40.50.1360 53 311 8.0E-87 T 13-10-2018 RA13_02695 8272a586da708cc9ed06bc22732b1c7a 312 SUPERFAMILY SSF88659 13 47 1.77E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_11800 1712f2cc8a5c36163b8f0629b7e39d18 274 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 122 251 3.4E-45 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 RA13_11800 1712f2cc8a5c36163b8f0629b7e39d18 274 Gene3D G3DSA:3.30.1380.10 59 274 1.4E-91 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RA13_11800 1712f2cc8a5c36163b8f0629b7e39d18 274 SUPERFAMILY SSF55166 107 259 8.89E-40 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RA13_12915 0d3785e7867ae75dd00c2ddc84f735cf 241 SMART SM00382 27 210 2.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_12915 0d3785e7867ae75dd00c2ddc84f735cf 241 Pfam PF00005 ABC transporter 18 161 3.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_12915 0d3785e7867ae75dd00c2ddc84f735cf 241 Gene3D G3DSA:3.40.50.300 1 240 1.1E-68 T 13-10-2018 RA13_12915 0d3785e7867ae75dd00c2ddc84f735cf 241 SUPERFAMILY SSF52540 2 225 9.06E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 217 325 4.1E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 252 266 2.1E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 304 2.1E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 280 2.1E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 323 2.1E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 SMART SM00387 216 326 4.5E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 Gene3D G3DSA:1.10.287.130 123 174 4.7E-30 T 13-10-2018 RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 Gene3D G3DSA:3.30.565.10 175 323 4.7E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_07525 9dffd27e21b597a20f7b5a657be7ab56 334 SUPERFAMILY SSF55874 175 323 3.27E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00795 1732fbabe76cd74273da857586d3992b 401 SUPERFAMILY SSF103473 3 384 5.75E-45 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_00795 1732fbabe76cd74273da857586d3992b 401 Gene3D G3DSA:1.20.1250.20 4 181 4.8E-17 T 13-10-2018 RA13_00795 1732fbabe76cd74273da857586d3992b 401 Gene3D G3DSA:1.20.1250.20 202 384 7.1E-28 T 13-10-2018 RA13_00795 1732fbabe76cd74273da857586d3992b 401 Pfam PF07690 Major Facilitator Superfamily 11 234 3.6E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_10465 11c81cafc66cf759455941e0b5657d2d 55 Pfam PF13314 Domain of unknown function (DUF4083) 2 46 8.8E-6 T 13-10-2018 IPR025143 Protein of unknown function DUF4083 RA13_15090 ce3b17310265e7e609ad4e183f3a2bc0 149 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 149 5.6E-54 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 RA13_15090 ce3b17310265e7e609ad4e183f3a2bc0 149 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RA13_15090 ce3b17310265e7e609ad4e183f3a2bc0 149 Pfam PF00460 Flagella basal body rod protein 7 37 3.4E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RA13_15090 ce3b17310265e7e609ad4e183f3a2bc0 149 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 99 145 1.1E-10 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RA13_15015 02cc3969c53999cf671a98855fd16bc1 120 Pfam PF00072 Response regulator receiver domain 5 116 1.5E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_15015 02cc3969c53999cf671a98855fd16bc1 120 Gene3D G3DSA:3.40.50.2300 2 120 9.1E-41 T 13-10-2018 RA13_15015 02cc3969c53999cf671a98855fd16bc1 120 SMART SM00448 3 115 1.5E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_15015 02cc3969c53999cf671a98855fd16bc1 120 SUPERFAMILY SSF52172 4 119 1.18E-40 T 13-10-2018 IPR011006 CheY-like superfamily RA13_06785 37cb1eca413f072ee5e6f20c69049b33 166 Pfam PF01037 Lrp/AsnC ligand binding domain 73 144 6.5E-15 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RA13_06785 37cb1eca413f072ee5e6f20c69049b33 166 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 49 1.2E-5 T 13-10-2018 RA13_06785 37cb1eca413f072ee5e6f20c69049b33 166 SMART SM00344 3 114 2.0E-5 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RA13_06785 37cb1eca413f072ee5e6f20c69049b33 166 Gene3D G3DSA:3.30.70.920 55 153 2.4E-21 T 13-10-2018 RA13_06785 37cb1eca413f072ee5e6f20c69049b33 166 Gene3D G3DSA:1.10.10.10 3 54 3.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_06785 37cb1eca413f072ee5e6f20c69049b33 166 SUPERFAMILY SSF54909 66 147 4.02E-18 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_06785 37cb1eca413f072ee5e6f20c69049b33 166 SUPERFAMILY SSF46785 3 61 1.55E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_10170 6798962b5f3611a66571029656d090a8 131 Pfam PF01029 NusB family 4 124 8.9E-42 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RA13_10170 6798962b5f3611a66571029656d090a8 131 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 2 127 3.1E-45 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 RA13_10170 6798962b5f3611a66571029656d090a8 131 Gene3D G3DSA:1.10.940.10 1 125 5.1E-46 T 13-10-2018 IPR035926 NusB-like superfamily RA13_10170 6798962b5f3611a66571029656d090a8 131 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 1 129 25.213 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 RA13_10170 6798962b5f3611a66571029656d090a8 131 SUPERFAMILY SSF48013 2 128 5.23E-43 T 13-10-2018 IPR035926 NusB-like superfamily RA13_09305 bcca7e5bc7e3d42729501cc69a6570a6 202 Pfam PF13346 ABC-2 family transporter protein 3 198 1.5E-28 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 31 174 1.8E-62 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 SUPERFAMILY SSF54211 87 179 8.85E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 61 74 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 194 41.683 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 SUPERFAMILY SSF54211 1 86 9.74E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 156 168 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 Gene3D G3DSA:3.30.230.40 90 194 1.7E-40 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RA13_05060 0bc396ca2e82a2f442e492031da853a1 194 Gene3D G3DSA:3.30.230.40 1 89 1.3E-34 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 19 431 42.341 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 235 250 - T 13-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 39 296 2.3E-78 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 SUPERFAMILY SSF50621 272 431 4.19E-55 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 Gene3D G3DSA:3.20.20.10 38 297 3.0E-163 T 13-10-2018 IPR029066 PLP-binding barrel RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 81 1.4E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 388 401 1.4E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 287 306 1.4E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 95 1.4E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 198 211 1.4E-18 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 33 388 7.3E-19 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 81 98 2.5E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 398 420 2.5E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 316 334 2.5E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 170 179 2.5E-31 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 Gene3D G3DSA:2.40.37.10 17 427 3.0E-163 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 9 430 2.0E-165 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 63 81 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RA13_10670 7b388555fc8a19291f6c7b44681074b8 439 SUPERFAMILY SSF51419 30 299 2.18E-81 T 13-10-2018 IPR029066 PLP-binding barrel RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 SUPERFAMILY SSF53822 63 333 1.55E-87 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 Pfam PF13377 Periplasmic binding protein-like domain 172 332 6.7E-34 T 13-10-2018 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 Gene3D G3DSA:3.40.50.2300 162 292 1.4E-95 T 13-10-2018 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 13-10-2018 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 SMART SM00354 3 73 5.6E-39 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 4.4E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 4.4E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 Gene3D G3DSA:1.10.260.40 2 61 1.6E-28 T 13-10-2018 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 TIGRFAM TIGR01481 ccpA: catabolite control protein A 3 333 4.1E-162 T 13-10-2018 IPR006377 Catabolite control protein A GO:0006355 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 SUPERFAMILY SSF47413 3 61 7.82E-20 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 Gene3D G3DSA:3.40.50.2300 64 311 1.4E-95 T 13-10-2018 RA13_07805 4290fa0bbba75f5fd417a98cb2e6f49e 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 2.9E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Pfam PF00672 HAMP domain 195 241 8.9E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Gene3D G3DSA:1.10.287.130 360 435 1.9E-25 T 13-10-2018 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Gene3D G3DSA:3.30.450.20 249 359 1.8E-13 T 13-10-2018 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SUPERFAMILY SSF55874 420 591 3.14E-50 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Gene3D G3DSA:3.30.565.10 437 593 2.1E-48 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SMART SM00304 194 246 3.2E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Pfam PF00989 PAS fold 253 355 8.4E-9 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SUPERFAMILY SSF47384 348 432 4.51E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SMART SM00091 253 320 4.2E-7 T 13-10-2018 IPR000014 PAS domain RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 567 3.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 528 3.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 542 3.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 586 3.3E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SMART SM00388 364 431 3.2E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Pfam PF00512 His Kinase A (phospho-acceptor) domain 365 431 7.6E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SUPERFAMILY SSF158472 195 242 3.66E-10 T 13-10-2018 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 587 1.6E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SUPERFAMILY SSF55785 246 356 4.19E-9 T 13-10-2018 IPR035965 PAS domain superfamily RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 Gene3D G3DSA:1.20.1480.50 155 248 8.9E-18 T 13-10-2018 RA13_10865 010b215b22f9f0e52ab5ebfc15d7d19d 595 SMART SM00387 477 589 7.6E-43 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_08980 dd51593bb51aefdd2695ea330e993b53 170 Gene3D G3DSA:3.40.50.2020 1 170 1.5E-59 T 13-10-2018 RA13_08980 dd51593bb51aefdd2695ea330e993b53 170 SUPERFAMILY SSF53271 2 164 7.81E-50 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_08980 dd51593bb51aefdd2695ea330e993b53 170 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 38.303 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 RA13_08980 dd51593bb51aefdd2695ea330e993b53 170 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 3 170 1.0E-70 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 RA13_08980 dd51593bb51aefdd2695ea330e993b53 170 Pfam PF00156 Phosphoribosyl transferase domain 35 151 5.2E-16 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RA13_05005 3b6f093822950c48ce3649604b197916 395 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 384 3.3E-147 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RA13_05005 3b6f093822950c48ce3649604b197916 395 SUPERFAMILY SSF51338 4 391 7.65E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_05005 3b6f093822950c48ce3649604b197916 395 Pfam PF01979 Amidohydrolase family 54 386 1.1E-33 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RA13_05005 3b6f093822950c48ce3649604b197916 395 PIRSF PIRSF038994 3 391 2.9E-139 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 RA13_05005 3b6f093822950c48ce3649604b197916 395 Gene3D G3DSA:3.20.20.140 58 358 1.1E-150 T 13-10-2018 RA13_05005 3b6f093822950c48ce3649604b197916 395 SUPERFAMILY SSF51556 58 358 5.8E-97 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_05005 3b6f093822950c48ce3649604b197916 395 Gene3D G3DSA:2.30.40.10 12 386 1.1E-150 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 PIRSF PIRSF005814 1 785 1.2E-289 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 SMART SM00533 5 315 2.7E-43 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 SMART SM00534 328 513 3.0E-81 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 Gene3D G3DSA:3.30.1370.110 698 785 9.7E-23 T 13-10-2018 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 SUPERFAMILY SSF48334 17 287 1.24E-30 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 Pfam PF01713 Smr domain 710 785 5.0E-19 T 13-10-2018 IPR002625 Smr domain RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 SMART SM00463 707 785 1.3E-20 T 13-10-2018 IPR002625 Smr domain RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 410 426 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 Pfam PF00488 MutS domain V 331 512 1.5E-35 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 TIGRFAM TIGR01069 mutS2: MutS2 family protein 2 785 0.0 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 Gene3D G3DSA:3.40.50.300 292 598 2.8E-83 T 13-10-2018 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 SUPERFAMILY SSF160443 709 785 6.8E-9 T 13-10-2018 IPR036063 Smr domain superfamily RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 SUPERFAMILY SSF52540 292 512 2.55E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 Gene3D G3DSA:1.10.1420.10 34 283 4.2E-9 T 13-10-2018 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 Gene3D G3DSA:1.10.1420.10 138 259 4.2E-9 T 13-10-2018 RA13_08430 c8bea66fc0ad948b78d850d3aa2936a4 785 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 784 22.354 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 RA13_12900 86d5beac6ca074b05a6ee1ab8c8ea379 287 Gene3D G3DSA:1.20.120.330 150 287 9.4E-47 T 13-10-2018 RA13_12900 86d5beac6ca074b05a6ee1ab8c8ea379 287 Gene3D G3DSA:3.30.460.10 9 149 4.3E-57 T 13-10-2018 RA13_12900 86d5beac6ca074b05a6ee1ab8c8ea379 287 PIRSF PIRSF000812 1 283 4.5E-118 T 13-10-2018 IPR007530 Aminoglycoside 6-adenylyltransferase RA13_12900 86d5beac6ca074b05a6ee1ab8c8ea379 287 SUPERFAMILY SSF81301 1 131 5.56E-46 T 13-10-2018 RA13_12900 86d5beac6ca074b05a6ee1ab8c8ea379 287 Pfam PF04439 Streptomycin adenylyltransferase 2 277 1.2E-114 T 13-10-2018 IPR007530 Aminoglycoside 6-adenylyltransferase RA13_12900 86d5beac6ca074b05a6ee1ab8c8ea379 287 SUPERFAMILY SSF81631 138 280 1.1E-52 T 13-10-2018 RA13_08975 622e30370787bc430d1566d0e84d1bda 786 Gene3D G3DSA:3.90.1640.30 57 318 8.5E-98 T 13-10-2018 RA13_08975 622e30370787bc430d1566d0e84d1bda 786 Pfam PF10141 Single-strand DNA-specific exonuclease, C terminal domain 566 769 5.8E-68 T 13-10-2018 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal RA13_08975 622e30370787bc430d1566d0e84d1bda 786 Pfam PF02272 DHHA1 domain 315 437 8.2E-22 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RA13_08975 622e30370787bc430d1566d0e84d1bda 786 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 28 559 1.2E-184 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RA13_08975 622e30370787bc430d1566d0e84d1bda 786 Pfam PF01368 DHH family 83 218 3.4E-11 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_08975 622e30370787bc430d1566d0e84d1bda 786 Gene3D G3DSA:3.10.310.30 319 442 2.3E-35 T 13-10-2018 RA13_08975 622e30370787bc430d1566d0e84d1bda 786 SUPERFAMILY SSF64182 57 450 6.15E-124 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily RA13_11195 9b94a16ec5972dd9480201eddc6a4966 236 Gene3D G3DSA:3.40.50.10320 1 236 2.0E-85 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RA13_11195 9b94a16ec5972dd9480201eddc6a4966 236 TIGRFAM TIGR04001 thiol_BshB1: bacillithiol biosynthesis deacetylase BshB1 4 226 3.8E-99 T 13-10-2018 IPR023842 Bacillithiol biosynthesis deacetylase, BshB1 GO:0019213|GO:0071793 RA13_11195 9b94a16ec5972dd9480201eddc6a4966 236 SUPERFAMILY SSF102588 4 228 5.1E-57 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RA13_11195 9b94a16ec5972dd9480201eddc6a4966 236 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 123 5.6E-22 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RA13_07985 a82c2c42db12736da9f6087f9a21ea0f 334 Pfam PF01343 Peptidase family S49 129 280 1.4E-58 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RA13_07985 a82c2c42db12736da9f6087f9a21ea0f 334 Gene3D G3DSA:3.40.1750.20 170 236 3.6E-90 T 13-10-2018 RA13_07985 a82c2c42db12736da9f6087f9a21ea0f 334 Gene3D G3DSA:3.90.226.10 60 275 3.6E-90 T 13-10-2018 RA13_07985 a82c2c42db12736da9f6087f9a21ea0f 334 SUPERFAMILY SSF52096 55 267 8.45E-42 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_07985 a82c2c42db12736da9f6087f9a21ea0f 334 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 58 279 1.4E-88 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:1.10.1200.10 965 1045 8.4E-26 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 SMART SM00823 Phosphopantetheine attachment site 975 1044 9.5E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:3.40.50.980 474 779 2.2E-114 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 491 891 9.4E-130 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Pfam PF00550 Phosphopantetheine attachment site 976 1040 4.0E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:3.30.559.10 15 382 7.6E-159 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 SUPERFAMILY SSF56801 428 987 8.37E-153 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Pfam PF00975 Thioesterase domain 1061 1263 1.9E-35 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:3.30.559.30 194 447 7.6E-159 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 SUPERFAMILY SSF52777 15 192 5.11E-44 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:2.30.38.10 780 857 9.8E-33 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 ProSitePatterns PS00455 Putative AMP-binding domain signature. 612 623 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:3.40.50.1820 1057 1264 1.5E-74 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Pfam PF00501 AMP-binding enzyme 470 867 1.6E-104 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Pfam PF13193 AMP-binding enzyme C-terminal domain 875 948 1.1E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 ProSitePatterns PS00012 Phosphopantetheine attachment site. 999 1014 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:3.30.300.30 862 963 1.2E-33 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 SUPERFAMILY SSF47336 969 1040 1.31E-20 T 13-10-2018 IPR036736 ACP-like superfamily RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 SMART SM00824 Thioesterase 1063 1268 0.0012 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 SUPERFAMILY SSF52777 194 434 2.56E-52 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 SUPERFAMILY SSF53474 1056 1268 2.19E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Pfam PF00668 Condensation domain 9 451 1.8E-135 T 13-10-2018 IPR001242 Condensation domain RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:1.10.287.490 1153 1207 1.5E-74 T 13-10-2018 RA13_21690 b89e16fe4f78d0682a4ef52ddefd2b8d 1276 Gene3D G3DSA:3.40.50.980 492 627 2.2E-114 T 13-10-2018 RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 Gene3D G3DSA:3.20.20.80 125 411 1.3E-105 T 13-10-2018 RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 SUPERFAMILY SSF54106 1 42 1.57E-9 T 13-10-2018 RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 Gene3D G3DSA:3.10.50.10 318 377 1.3E-105 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 SUPERFAMILY SSF51445 123 422 7.96E-47 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 Pfam PF01476 LysM domain 1 42 4.9E-14 T 13-10-2018 IPR018392 LysM domain RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 Pfam PF01476 LysM domain 48 91 1.5E-10 T 13-10-2018 IPR018392 LysM domain RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 Pfam PF00704 Glycosyl hydrolases family 18 148 404 1.0E-27 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 SUPERFAMILY SSF54106 47 91 1.09E-9 T 13-10-2018 RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 SMART SM00636 98 406 3.2E-35 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 Gene3D G3DSA:3.10.350.10 44 104 8.5E-13 T 13-10-2018 IPR036779 LysM domain superfamily RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 SMART SM00257 47 91 5.1E-13 T 13-10-2018 IPR018392 LysM domain RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 SMART SM00257 1 42 1.6E-13 T 13-10-2018 IPR018392 LysM domain RA13_01665 9887688a0ab6d0339d0ecbe655c2cb67 426 Gene3D G3DSA:3.10.350.10 1 42 4.9E-15 T 13-10-2018 IPR036779 LysM domain superfamily RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 SUPERFAMILY SSF55874 182 346 1.24E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 SMART SM00388 127 191 0.0011 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 347 3.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 304 3.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 276 290 3.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 3.7E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 238 347 3.7E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 Gene3D G3DSA:1.10.287.130 83 191 5.1E-7 T 13-10-2018 RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 SMART SM00387 237 350 2.5E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05160 652c6f0de58405472d9d8a0b3c2971e8 353 Gene3D G3DSA:3.30.565.10 196 350 4.9E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_05735 d13fd201abab8fd083ef9a55af4d4f68 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 222 7.5E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_05735 d13fd201abab8fd083ef9a55af4d4f68 227 Gene3D G3DSA:1.10.3720.10 2 226 8.1E-51 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05735 d13fd201abab8fd083ef9a55af4d4f68 227 SUPERFAMILY SSF161098 9 223 3.14E-47 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05735 d13fd201abab8fd083ef9a55af4d4f68 227 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 19 223 2.2E-68 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 RA13_18285 a8c7255ed4563149d87cf41bda615106 359 SUPERFAMILY SSF53383 1 357 9.37E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_18285 a8c7255ed4563149d87cf41bda615106 359 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 358 48.051 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RA13_18285 a8c7255ed4563149d87cf41bda615106 359 Gene3D G3DSA:3.90.1150.10 256 358 9.6E-41 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_18285 a8c7255ed4563149d87cf41bda615106 359 Gene3D G3DSA:3.40.640.10 16 255 1.1E-83 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_18285 a8c7255ed4563149d87cf41bda615106 359 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 357 1.6E-154 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RA13_18285 a8c7255ed4563149d87cf41bda615106 359 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 185 204 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RA13_18285 a8c7255ed4563149d87cf41bda615106 359 Pfam PF00266 Aminotransferase class-V 6 347 4.2E-47 T 13-10-2018 IPR000192 Aminotransferase class V domain RA13_18285 a8c7255ed4563149d87cf41bda615106 359 PIRSF PIRSF000525 1 359 6.4E-151 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RA13_02175 c60c4440079b791142d00ae45915bd13 398 PRINTS PR00834 HtrA/DegQ protease family signature 120 132 9.9E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_02175 c60c4440079b791142d00ae45915bd13 398 PRINTS PR00834 HtrA/DegQ protease family signature 226 243 9.9E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_02175 c60c4440079b791142d00ae45915bd13 398 PRINTS PR00834 HtrA/DegQ protease family signature 248 265 9.9E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_02175 c60c4440079b791142d00ae45915bd13 398 PRINTS PR00834 HtrA/DegQ protease family signature 141 161 9.9E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_02175 c60c4440079b791142d00ae45915bd13 398 PRINTS PR00834 HtrA/DegQ protease family signature 182 206 9.9E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_02175 c60c4440079b791142d00ae45915bd13 398 PRINTS PR00834 HtrA/DegQ protease family signature 339 351 9.9E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_02175 c60c4440079b791142d00ae45915bd13 398 SMART SM00228 293 381 1.6E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_02175 c60c4440079b791142d00ae45915bd13 398 SUPERFAMILY SSF50156 277 389 1.64E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_02175 c60c4440079b791142d00ae45915bd13 398 Gene3D G3DSA:2.40.10.10 63 173 2.6E-26 T 13-10-2018 RA13_02175 c60c4440079b791142d00ae45915bd13 398 Gene3D G3DSA:2.30.42.10 296 396 2.5E-25 T 13-10-2018 RA13_02175 c60c4440079b791142d00ae45915bd13 398 Gene3D G3DSA:2.40.10.10 174 295 4.6E-37 T 13-10-2018 RA13_02175 c60c4440079b791142d00ae45915bd13 398 Pfam PF13365 Trypsin-like peptidase domain 108 255 1.0E-31 T 13-10-2018 RA13_02175 c60c4440079b791142d00ae45915bd13 398 SUPERFAMILY SSF50494 75 289 2.77E-54 T 13-10-2018 IPR009003 Peptidase S1, PA clan RA13_02175 c60c4440079b791142d00ae45915bd13 398 Pfam PF13180 PDZ domain 293 390 7.9E-20 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_19215 2d24318f556642b4cb7fcca878790604 63 Pfam PF14151 YfhD-like protein 1 61 1.5E-25 T 13-10-2018 IPR025435 YfhD-like protein RA13_19215 2d24318f556642b4cb7fcca878790604 63 ProDom PD053407 YFHD 1 63 1.0E-24 T 13-10-2018 RA13_11295 84a8018ca1c8455b2acd6673fe7f43f8 81 Pfam PF17522 Family of unknown function (DUF5446) 1 69 1.4E-23 T 13-10-2018 IPR020252 Protein of unknown function DUF5446 RA13_11295 84a8018ca1c8455b2acd6673fe7f43f8 81 ProDom PD059812 YPPD 1 69 2.0E-19 T 13-10-2018 IPR020252 Protein of unknown function DUF5446 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 SUPERFAMILY SSF47336 967 1039 9.03E-19 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Gene3D G3DSA:3.40.50.1820 1055 1260 6.0E-71 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 PIRSF PIRSF001617 827 915 9.0E-15 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 PIRSF PIRSF001617 912 1063 3.1E-22 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 PIRSF PIRSF001617 196 582 1.9E-19 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 PIRSF PIRSF001617 580 836 7.6E-19 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Gene3D G3DSA:3.30.300.30 862 961 6.3E-30 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Pfam PF00975 Thioesterase domain 1062 1164 3.3E-21 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 SUPERFAMILY SSF52777 13 192 3.22E-42 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Gene3D G3DSA:3.30.559.30 194 451 1.2E-134 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 SUPERFAMILY SSF56801 434 987 2.62E-151 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 ProSitePatterns PS00012 Phosphopantetheine attachment site. 998 1013 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 PRINTS PR00154 AMP-binding signature 609 620 1.7E-5 T 13-10-2018 IPR020459 AMP-binding RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 PRINTS PR00154 AMP-binding signature 621 629 1.7E-5 T 13-10-2018 IPR020459 AMP-binding RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Gene3D G3DSA:3.40.50.12780 460 861 4.0E-133 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Pfam PF00501 AMP-binding enzyme 475 867 2.4E-103 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Gene3D G3DSA:3.30.559.10 13 386 1.2E-134 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Pfam PF00550 Phosphopantetheine attachment site 975 1037 2.0E-12 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Gene3D G3DSA:1.20.890.40 1163 1198 6.0E-71 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Pfam PF13193 AMP-binding enzyme C-terminal domain 875 947 6.2E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 496 891 1.1E-127 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Pfam PF00668 Condensation domain 8 454 1.7E-125 T 13-10-2018 IPR001242 Condensation domain RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 ProSitePatterns PS00455 Putative AMP-binding domain signature. 614 625 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 SUPERFAMILY SSF52777 193 438 2.22E-53 T 13-10-2018 RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 SUPERFAMILY SSF53474 1052 1261 7.82E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_12585 c14bffa19024b1afc2df741bd01a2a19 1275 Gene3D G3DSA:1.10.1200.10 962 1046 3.0E-22 T 13-10-2018 IPR036736 ACP-like superfamily RA13_02045 50960ab7ade5925aeaa0b194821e9d0e 436 Pfam PF07690 Major Facilitator Superfamily 30 391 5.3E-59 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_02045 50960ab7ade5925aeaa0b194821e9d0e 436 SUPERFAMILY SSF103473 13 434 7.72E-83 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_02045 50960ab7ade5925aeaa0b194821e9d0e 436 Gene3D G3DSA:1.20.1250.20 14 207 1.2E-44 T 13-10-2018 RA13_02045 50960ab7ade5925aeaa0b194821e9d0e 436 Gene3D G3DSA:1.20.1250.20 231 433 4.2E-29 T 13-10-2018 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 Hamap MF_00015 LexA repressor [lexA]. 3 205 34.418 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 Pfam PF01726 LexA DNA binding domain 1 65 8.3E-29 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 Gene3D G3DSA:2.10.109.10 88 205 3.7E-43 T 13-10-2018 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 TIGRFAM TIGR00498 lexA: repressor LexA 1 205 1.8E-88 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 SUPERFAMILY SSF46785 3 70 1.78E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 131 142 1.1E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 120 130 1.1E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 160 172 1.1E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 Pfam PF00717 Peptidase S24-like 123 189 4.9E-17 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 SUPERFAMILY SSF51306 82 203 6.8E-36 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RA13_12805 1ddbf51f60ddfc344d51ce2e4f946727 206 Gene3D G3DSA:1.10.10.10 2 68 2.9E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08400 a1135b0519be9429e6df2f97468cb918 344 Gene3D G3DSA:3.30.930.10 9 344 3.2E-125 T 13-10-2018 RA13_08400 a1135b0519be9429e6df2f97468cb918 344 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 21 88 8.3E-26 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RA13_08400 a1135b0519be9429e6df2f97468cb918 344 Pfam PF01409 tRNA synthetases class II core domain (F) 93 341 1.3E-108 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RA13_08400 a1135b0519be9429e6df2f97468cb918 344 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 40 342 2.3E-117 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RA13_08400 a1135b0519be9429e6df2f97468cb918 344 SUPERFAMILY SSF55681 93 342 7.65E-83 T 13-10-2018 RA13_08400 a1135b0519be9429e6df2f97468cb918 344 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 341 48.834 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RA13_08400 a1135b0519be9429e6df2f97468cb918 344 SUPERFAMILY SSF46589 15 99 1.78E-20 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RA13_02635 4212006c3ad4aca05f97c50fd0ab9dc7 257 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_02635 4212006c3ad4aca05f97c50fd0ab9dc7 257 Gene3D G3DSA:3.40.50.300 1 251 3.7E-66 T 13-10-2018 RA13_02635 4212006c3ad4aca05f97c50fd0ab9dc7 257 SUPERFAMILY SSF52540 4 224 1.49E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_02635 4212006c3ad4aca05f97c50fd0ab9dc7 257 Pfam PF00005 ABC transporter 23 171 4.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_02635 4212006c3ad4aca05f97c50fd0ab9dc7 257 SMART SM00382 32 239 6.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 215 443 5.5E-89 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 Gene3D G3DSA:2.40.50.100 2 81 2.0E-25 T 13-10-2018 RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 Pfam PF00364 Biotin-requiring enzyme 4 75 4.3E-22 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 Gene3D G3DSA:3.30.559.10 196 442 8.7E-91 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 SUPERFAMILY SSF52777 203 443 8.9E-89 T 13-10-2018 RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 SUPERFAMILY SSF51230 3 90 4.97E-25 T 13-10-2018 IPR011053 Single hybrid motif RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 Pfam PF02817 e3 binding domain 140 174 2.8E-15 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 SUPERFAMILY SSF47005 134 180 1.31E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_15890 ef73b4ac68d6abe32a15abdffee7d9b9 445 Gene3D G3DSA:4.10.320.10 129 182 1.0E-22 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 Gene3D G3DSA:3.50.30.20 2 148 7.8E-56 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00097 Anthranilate synthase component II signature 214 223 1.3E-6 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00097 Anthranilate synthase component II signature 241 252 1.3E-6 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00097 Anthranilate synthase component II signature 325 338 1.3E-6 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 Gene3D G3DSA:3.40.50.880 164 359 1.8E-35 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 4 351 5.2E-145 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 SUPERFAMILY SSF52317 144 351 2.75E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00096 Glutamine amidotransferase superfamily signature 214 223 7.3E-12 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00096 Glutamine amidotransferase superfamily signature 325 338 7.3E-12 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00096 Glutamine amidotransferase superfamily signature 241 252 7.3E-12 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 4 129 3.2E-52 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 SMART SM01097 1 131 4.3E-85 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 SUPERFAMILY SSF52021 3 144 2.62E-56 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 241 257 1.1E-36 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 283 294 1.1E-36 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 172 186 1.1E-36 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 211 225 1.1E-36 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 258 275 1.1E-36 T 13-10-2018 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 354 48.194 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15425 efa8046706dea587f94c6cbb74e28e88 364 Pfam PF00117 Glutamine amidotransferase class-I 174 348 3.2E-46 T 13-10-2018 IPR017926 Glutamine amidotransferase RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Gene3D G3DSA:3.40.50.2300 410 499 1.4E-11 T 13-10-2018 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 SUPERFAMILY SSF52794 409 488 6.28E-9 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 517 649 1.2E-26 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Pfam PF00874 PRD domain 201 283 9.9E-15 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Pfam PF00874 PRD domain 311 399 5.1E-20 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 SUPERFAMILY SSF63520 308 402 6.54E-21 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 SUPERFAMILY SSF55804 510 648 1.96E-27 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Gene3D G3DSA:1.10.1790.10 304 401 3.4E-21 T 13-10-2018 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Pfam PF08279 HTH domain 7 65 2.5E-7 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Gene3D G3DSA:1.10.1790.10 190 288 1.2E-12 T 13-10-2018 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Gene3D G3DSA:1.10.10.10 3 156 2.4E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Gene3D G3DSA:3.40.930.10 510 649 1.3E-27 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 557 573 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_20670 8521a6b4a00236c934dd2954609632b2 650 SUPERFAMILY SSF63520 192 284 4.19E-17 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_20670 8521a6b4a00236c934dd2954609632b2 650 Pfam PF05043 Mga helix-turn-helix domain 103 164 6.4E-10 T 13-10-2018 IPR007737 Mga helix-turn-helix domain RA13_11750 e486826bcd0d71c167414c3578b8f90f 475 Gene3D G3DSA:3.20.20.70 63 348 9.5E-119 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_11750 e486826bcd0d71c167414c3578b8f90f 475 PIRSF PIRSF004911 2 402 1.1E-160 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase RA13_11750 e486826bcd0d71c167414c3578b8f90f 475 Pfam PF12544 Lysine-2,3-aminomutase 321 447 1.1E-61 T 13-10-2018 IPR025895 Lysine-2,3-aminomutase, C-terminal domain RA13_11750 e486826bcd0d71c167414c3578b8f90f 475 TIGRFAM TIGR03820 lys_2_3_AblA: lysine-2,3-aminomutase 23 427 1.7E-191 T 13-10-2018 IPR022459 Lysine-2,3-aminomutase KEGG: 00310+5.4.3.2 RA13_11750 e486826bcd0d71c167414c3578b8f90f 475 SUPERFAMILY SSF102114 114 358 2.75E-33 T 13-10-2018 RA13_11750 e486826bcd0d71c167414c3578b8f90f 475 TIGRFAM TIGR00238 TIGR00238: KamA family protein 13 342 5.9E-157 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase RA13_11750 e486826bcd0d71c167414c3578b8f90f 475 Gene3D G3DSA:2.40.50.600 349 414 1.3E-17 T 13-10-2018 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 Gene3D G3DSA:3.30.420.40 142 337 4.9E-155 T 13-10-2018 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 Pfam PF00871 Acetokinase family 10 347 1.4E-69 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 9 358 1.5E-176 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 SUPERFAMILY SSF53067 9 177 5.18E-72 T 13-10-2018 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 10 21 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 Gene3D G3DSA:3.30.420.40 9 360 4.9E-155 T 13-10-2018 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 PRINTS PR00471 Acetate kinase family signature 10 21 3.3E-14 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 PRINTS PR00471 Acetate kinase family signature 184 205 3.3E-14 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 PRINTS PR00471 Acetate kinase family signature 279 292 3.3E-14 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 PRINTS PR00471 Acetate kinase family signature 302 318 3.3E-14 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 Hamap MF_00542 Probable butyrate kinase [buk]. 1 362 167.593 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 184 201 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 SUPERFAMILY SSF53067 122 351 9.58E-55 T 13-10-2018 RA13_10300 03a0c5dee1ed790b409dbccf8fb2c956 362 PIRSF PIRSF036458 6 361 1.3E-173 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 SMART SM00357 3 66 4.0E-31 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 SUPERFAMILY SSF50249 1 64 7.78E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.7E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 PIRSF PIRSF002599 1 66 5.1E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 Gene3D G3DSA:2.40.50.140 1 66 4.6E-31 T 13-10-2018 RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 PRINTS PR00050 Cold shock protein signature 24 33 3.9E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 PRINTS PR00050 Cold shock protein signature 39 57 3.9E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_18810 9610985c3b08892c857af6c1b9696b6d 66 PRINTS PR00050 Cold shock protein signature 4 19 3.9E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_17910 026b1a96ad5f5e7f8ad198f1497a2421 613 SUPERFAMILY SSF56235 1 226 3.17E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_17910 026b1a96ad5f5e7f8ad198f1497a2421 613 Pfam PF00733 Asparagine synthase 242 604 1.2E-98 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 RA13_17910 026b1a96ad5f5e7f8ad198f1497a2421 613 SUPERFAMILY SSF52402 230 576 1.2E-75 T 13-10-2018 RA13_17910 026b1a96ad5f5e7f8ad198f1497a2421 613 Pfam PF13537 Glutamine amidotransferase domain 48 169 8.6E-47 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RA13_17910 026b1a96ad5f5e7f8ad198f1497a2421 613 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 532 2.8E-180 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RA13_17910 026b1a96ad5f5e7f8ad198f1497a2421 613 PIRSF PIRSF001589 1 610 1.0E-151 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 RA13_17910 026b1a96ad5f5e7f8ad198f1497a2421 613 Gene3D G3DSA:3.60.20.10 2 183 3.9E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SMART SM00823 Phosphopantetheine attachment site 975 1044 0.13 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SMART SM00823 Phosphopantetheine attachment site 2014 2082 0.0052 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF52777 1234 1478 1.33E-60 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.559.30 194 453 3.6E-126 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.559.10 1061 1419 1.0E-145 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 2418 2570 5.3E-48 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 496 891 2.7E-129 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1530 1929 8.8E-139 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.559.30 2275 2552 1.0E-67 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.40.50.12780 1494 1899 3.6E-144 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.40.50.12780 461 861 1.5E-127 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF47336 2008 2078 2.62E-17 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF52777 194 459 5.56E-49 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.300.30 1900 2000 1.9E-31 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF56801 1469 2027 2.75E-159 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF56801 451 987 1.19E-153 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF52777 2293 2552 2.22E-38 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1647 1658 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF52777 2088 2279 1.85E-34 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF00668 Condensation domain 1058 1490 1.5E-131 T 13-10-2018 IPR001242 Condensation domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF00668 Condensation domain 8 453 3.7E-128 T 13-10-2018 IPR001242 Condensation domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF00668 Condensation domain 2091 2563 4.1E-110 T 13-10-2018 IPR001242 Condensation domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.300.30 862 965 2.8E-32 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF13193 AMP-binding enzyme C-terminal domain 875 948 1.0E-10 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF13193 AMP-binding enzyme C-terminal domain 1913 1988 7.7E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:1.10.1200.10 2005 2081 6.0E-23 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:1.10.1200.10 966 1047 1.1E-22 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF47336 967 1040 4.71E-17 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF52777 13 192 8.15E-42 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.559.10 2082 2274 8.5E-55 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 SUPERFAMILY SSF52777 1062 1226 5.93E-45 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF00550 Phosphopantetheine attachment site 2018 2078 7.5E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF00550 Phosphopantetheine attachment site 977 1039 2.1E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF00501 AMP-binding enzyme 1509 1905 1.4E-108 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Pfam PF00501 AMP-binding enzyme 475 867 2.5E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.559.30 1230 1474 1.0E-145 T 13-10-2018 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 ProSitePatterns PS00455 Putative AMP-binding domain signature. 614 625 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 Gene3D G3DSA:3.30.559.10 13 388 3.6E-126 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12570 7d3ffd6f5ba0e93f0cfc23b1f3947f62 2577 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2038 2053 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_20680 f5ece5863b429256a24b49912654e804 151 Pfam PF01047 MarR family 36 84 1.6E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20680 f5ece5863b429256a24b49912654e804 151 SMART SM00347 29 131 2.3E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20680 f5ece5863b429256a24b49912654e804 151 SUPERFAMILY SSF46785 35 145 4.34E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20680 f5ece5863b429256a24b49912654e804 151 Gene3D G3DSA:1.10.10.10 4 146 1.3E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21930 206caa36703deec5436898caded200f5 321 PIRSF PIRSF000102 3 320 1.2E-111 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 6 315 47.25 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 RA13_21930 206caa36703deec5436898caded200f5 321 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 176 182 - T 13-10-2018 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 RA13_21930 206caa36703deec5436898caded200f5 321 SUPERFAMILY SSF56327 147 312 8.36E-59 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 Gene3D G3DSA:3.90.110.10 149 314 1.4E-66 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 149 315 4.6E-41 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 Gene3D G3DSA:3.40.50.720 1 148 1.7E-57 T 13-10-2018 RA13_21930 206caa36703deec5436898caded200f5 321 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 8 146 7.9E-49 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 PRINTS PR00086 L-lactate dehydrogenase signature 8 32 7.9E-51 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 7.9E-51 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 PRINTS PR00086 L-lactate dehydrogenase signature 174 187 7.9E-51 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 PRINTS PR00086 L-lactate dehydrogenase signature 144 162 7.9E-51 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 PRINTS PR00086 L-lactate dehydrogenase signature 120 140 7.9E-51 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_21930 206caa36703deec5436898caded200f5 321 SUPERFAMILY SSF51735 3 146 5.51E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_21930 206caa36703deec5436898caded200f5 321 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 11 309 2.4E-131 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 RA13_16290 fcb8f1381c3e0826ffeeec8712d28421 214 Gene3D G3DSA:2.40.10.420 182 214 3.0E-14 T 13-10-2018 RA13_16290 fcb8f1381c3e0826ffeeec8712d28421 214 Pfam PF07486 Cell Wall Hydrolase 115 212 1.9E-27 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 RA13_16290 fcb8f1381c3e0826ffeeec8712d28421 214 Gene3D G3DSA:1.10.10.2520 99 177 7.4E-29 T 13-10-2018 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 221 235 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 6 369 3.2E-123 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 Gene3D G3DSA:3.40.640.10 6 282 3.4E-94 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 SUPERFAMILY SSF55904 341 487 6.28E-42 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 Gene3D G3DSA:3.90.105.10 420 477 9.9E-19 T 13-10-2018 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 Gene3D G3DSA:3.90.1150.10 312 404 8.2E-6 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 381 457 3.0E-12 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 RA13_15865 76ad871064a1cf65720c6cd7d6987a3e 490 SUPERFAMILY SSF53383 6 385 4.49E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_15025 418d3a5c393236e9009c71d38924dd08 332 SUPERFAMILY SSF103039 47 232 1.03E-34 T 13-10-2018 IPR028976 CheC-like superfamily RA13_15025 418d3a5c393236e9009c71d38924dd08 332 SUPERFAMILY SSF101801 251 323 7.98E-18 T 13-10-2018 IPR036429 SpoA-like superfamily RA13_15025 418d3a5c393236e9009c71d38924dd08 332 Pfam PF02154 Flagellar motor switch protein FliM 40 230 1.5E-82 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RA13_15025 418d3a5c393236e9009c71d38924dd08 332 Gene3D G3DSA:2.30.330.10 240 326 1.6E-10 T 13-10-2018 IPR036429 SpoA-like superfamily RA13_15025 418d3a5c393236e9009c71d38924dd08 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 3.0E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RA13_15025 418d3a5c393236e9009c71d38924dd08 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 3.0E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RA13_15025 418d3a5c393236e9009c71d38924dd08 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 91 107 3.0E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RA13_15025 418d3a5c393236e9009c71d38924dd08 332 PRINTS PR00955 Flagellar motor switch protein FliM signature 116 135 3.0E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RA13_15025 418d3a5c393236e9009c71d38924dd08 332 Gene3D G3DSA:3.40.1550.10 46 231 1.1E-60 T 13-10-2018 IPR028976 CheC-like superfamily RA13_15025 418d3a5c393236e9009c71d38924dd08 332 PIRSF PIRSF002888 2 332 3.1E-124 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RA13_15025 418d3a5c393236e9009c71d38924dd08 332 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 254 322 4.3E-22 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) RA13_15025 418d3a5c393236e9009c71d38924dd08 332 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 322 3.0E-115 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 SMART SM01387 8 88 7.5E-52 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 89 1.2E-42 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 7.0E-38 T 13-10-2018 RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 SUPERFAMILY SSF47060 3 89 7.36E-37 T 13-10-2018 IPR009068 S15/NS1, RNA-binding RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 Pfam PF00312 Ribosomal protein S15 8 88 1.8E-38 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 Gene3D G3DSA:1.10.287.10 2 89 8.5E-38 T 13-10-2018 RA13_14830 86244228c0cfb291becb7990ddb1af6a 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.218 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_07080 4f7a7f9f4e52f5251deedea1ef9d6091 175 Gene3D G3DSA:2.40.50.140 93 175 6.4E-31 T 13-10-2018 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 Gene3D G3DSA:1.10.40.30 411 462 8.1E-21 T 13-10-2018 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 Pfam PF10415 Fumarase C C-terminus 412 464 5.7E-19 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 Pfam PF00206 Lyase 16 345 2.7E-117 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 SUPERFAMILY SSF48557 8 465 2.98E-147 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 Gene3D G3DSA:1.20.200.10 143 410 1.8E-114 T 13-10-2018 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 9 472 2.4E-252 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 2.2E-32 T 13-10-2018 IPR000362 Fumarate lyase family RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 2.2E-32 T 13-10-2018 IPR000362 Fumarate lyase family RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 2.2E-32 T 13-10-2018 IPR000362 Fumarate lyase family RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 2.2E-32 T 13-10-2018 IPR000362 Fumarate lyase family RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 Gene3D G3DSA:1.10.275.10 9 142 2.7E-56 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 2.5E-6 T 13-10-2018 RA13_10565 726f50c4bf1972ae6aa65488acd6660a 476 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 2.5E-6 T 13-10-2018 RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 397 420 2000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 156 185 2.1 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 249 283 1.9 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 312 334 0.88 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 189 214 4200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 284 305 22.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 342 364 9300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 125 154 7300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00710 216 238 520.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SMART SM00722 72 237 1.0E-4 T 13-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 SUPERFAMILY SSF51126 49 460 2.24E-66 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 Pfam PF13229 Right handed beta helix region 149 336 1.6E-11 T 13-10-2018 IPR039448 Right handed beta helix domain RA13_10690 7bece31ce40db0e783a4e3b241126f5a 468 Gene3D G3DSA:2.160.20.10 35 443 6.9E-64 T 13-10-2018 IPR012334 Pectin lyase fold RA13_16350 b586655326b9142b40dc79375f811d6a 700 Gene3D G3DSA:3.40.50.300 62 254 3.6E-66 T 13-10-2018 RA13_16350 b586655326b9142b40dc79375f811d6a 700 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 117 248 3.5E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_16350 b586655326b9142b40dc79375f811d6a 700 Gene3D G3DSA:3.40.50.300 392 608 6.4E-83 T 13-10-2018 RA13_16350 b586655326b9142b40dc79375f811d6a 700 SMART SM01086 610 697 1.3E-30 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_16350 b586655326b9142b40dc79375f811d6a 700 Pfam PF07724 AAA domain (Cdc48 subfamily) 438 604 2.1E-51 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_16350 b586655326b9142b40dc79375f811d6a 700 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 610 686 5.8E-23 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_16350 b586655326b9142b40dc79375f811d6a 700 Gene3D G3DSA:1.10.8.60 258 383 4.7E-35 T 13-10-2018 RA13_16350 b586655326b9142b40dc79375f811d6a 700 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 473 491 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 RA13_16350 b586655326b9142b40dc79375f811d6a 700 SMART SM00382 112 256 5.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_16350 b586655326b9142b40dc79375f811d6a 700 SMART SM00382 439 611 2.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_16350 b586655326b9142b40dc79375f811d6a 700 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 207 219 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RA13_16350 b586655326b9142b40dc79375f811d6a 700 SUPERFAMILY SSF52540 74 325 4.66E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_16350 b586655326b9142b40dc79375f811d6a 700 Pfam PF02151 UvrB/uvrC motif 328 360 1.5E-5 T 13-10-2018 IPR001943 UVR domain GO:0005515 RA13_16350 b586655326b9142b40dc79375f811d6a 700 Gene3D G3DSA:1.10.8.60 610 700 6.4E-24 T 13-10-2018 RA13_16350 b586655326b9142b40dc79375f811d6a 700 SUPERFAMILY SSF52540 388 690 1.3E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_16350 b586655326b9142b40dc79375f811d6a 700 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 517 535 3.0E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_16350 b586655326b9142b40dc79375f811d6a 700 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 443 461 3.0E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_16350 b586655326b9142b40dc79375f811d6a 700 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 550 564 3.0E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_16350 b586655326b9142b40dc79375f811d6a 700 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 488 506 3.0E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_16350 b586655326b9142b40dc79375f811d6a 700 Gene3D G3DSA:4.10.860.10 320 369 4.7E-35 T 13-10-2018 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 SUPERFAMILY SSF46689 721 769 8.33E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 SUPERFAMILY SSF46689 670 719 2.12E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 Gene3D G3DSA:3.30.450.20 181 303 8.4E-7 T 13-10-2018 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 722 763 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 Pfam PF12833 Helix-turn-helix domain 692 768 1.1E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 SMART SM00342 685 767 1.1E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 Gene3D G3DSA:1.10.10.60 718 773 2.4E-18 T 13-10-2018 RA13_19885 b36578eef41c0b1fabb79275970f9de0 774 Gene3D G3DSA:1.10.10.60 666 717 1.4E-12 T 13-10-2018 RA13_06050 4517a5568cd4b04c52096ee53d795485 78 ProDom PD058325 YUSG BH3483 7 78 6.0E-32 T 13-10-2018 IPR020140 Uncharacterised protein family YusG RA13_06050 4517a5568cd4b04c52096ee53d795485 78 Pfam PF10830 Protein of unknown function (DUF2553) 6 78 6.4E-32 T 13-10-2018 IPR020140 Uncharacterised protein family YusG RA13_11160 e703ef33751cc3a7419d3c04c28a084a 185 Pfam PF07187 Protein of unknown function (DUF1405) 12 170 2.0E-57 T 13-10-2018 IPR009845 Protein of unknown function DUF1405 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 Gene3D G3DSA:3.40.50.10090 251 363 9.3E-6 T 13-10-2018 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 6 216 2.7E-45 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 SUPERFAMILY SSF53790 2 254 1.22E-78 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 9 23 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 241 5.6E-94 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 Gene3D G3DSA:3.40.1010.10 2 119 2.4E-42 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 Gene3D G3DSA:3.30.950.10 120 250 1.6E-44 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 SUPERFAMILY SSF69618 253 482 3.05E-11 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_21815 12ba6c49680bd595d668de831d3afaeb 493 PIRSF PIRSF036426 1 255 6.4E-96 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 Pfam PF02311 AraC-like ligand binding domain 29 96 4.7E-9 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 SUPERFAMILY SSF46689 232 280 3.09E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 SUPERFAMILY SSF51215 5 169 5.36E-21 T 13-10-2018 IPR037923 Transcription regulator HTH-like RA13_17895 c3928baa8e654128668dd27bc6d04425 287 Gene3D G3DSA:1.10.10.60 178 233 7.9E-10 T 13-10-2018 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 Gene3D G3DSA:1.10.10.2730 234 280 5.1E-16 T 13-10-2018 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 SUPERFAMILY SSF46689 184 230 2.78E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 SMART SM00342 196 279 2.7E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 Pfam PF12833 Helix-turn-helix domain 205 280 1.1E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_17895 c3928baa8e654128668dd27bc6d04425 287 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 233 275 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 60 82 4.8E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 225 237 4.8E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 175 190 4.8E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 192 214 4.8E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 SMART SM00363 352 413 1.3E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 Gene3D G3DSA:3.40.50.620 14 231 6.5E-71 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 SUPERFAMILY SSF52374 16 331 5.63E-86 T 13-10-2018 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 12 412 45.31 T 13-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 Pfam PF00579 tRNA synthetases class I (W and Y) 47 332 9.1E-79 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 SUPERFAMILY SSF55174 335 412 1.44E-17 T 13-10-2018 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 13 412 2.0E-137 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 Gene3D G3DSA:1.10.240.10 232 340 2.9E-35 T 13-10-2018 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 Pfam PF01479 S4 domain 355 386 2.5E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 56 66 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_03260 0bfa1e7239b12b57a29ebc8b303f2d1e 414 Gene3D G3DSA:3.10.290.10 341 412 7.3E-20 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_01470 651e3ad334c9785f9316a977340b066e 97 SUPERFAMILY SSF160537 2 85 5.49E-33 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 RA13_01470 651e3ad334c9785f9316a977340b066e 97 Pfam PF04026 SpoVG 2 81 3.4E-35 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 RA13_01470 651e3ad334c9785f9316a977340b066e 97 Hamap MF_00819 Putative septation protein SpoVG [spoVG]. 1 94 27.832 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 RA13_01470 651e3ad334c9785f9316a977340b066e 97 Gene3D G3DSA:3.30.1120.40 1 97 2.0E-40 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 RA13_14140 7034fc3fdd47e222dcdbf53c7b42c04b 159 ProDom PD034585 YOAO YDHH MEMBRANE PRECURSOR TRANSMEMBRANE SIGNAL 2 157 2.0E-39 T 13-10-2018 IPR032545 Protein of unknown function DUF4944 RA13_14140 7034fc3fdd47e222dcdbf53c7b42c04b 159 Pfam PF16302 Domain of unknown function (DUF4944) 31 159 1.1E-41 T 13-10-2018 IPR032545 Protein of unknown function DUF4944 RA13_21710 2a1f8ce0829361e44434b565ca45d660 210 Gene3D G3DSA:3.20.20.70 1 209 1.3E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_21710 2a1f8ce0829361e44434b565ca45d660 210 TIGRFAM TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase 2 207 7.7E-90 T 13-10-2018 IPR017553 3-hexulose-6-phosphate synthase GO:0005975|GO:0043801 KEGG: 00030+4.1.2.43|KEGG: 00680+4.1.2.43|MetaCyc: PWY-1861|MetaCyc: PWY-7796 RA13_21710 2a1f8ce0829361e44434b565ca45d660 210 SUPERFAMILY SSF51366 3 209 5.54E-41 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_21710 2a1f8ce0829361e44434b565ca45d660 210 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 2 202 3.1E-31 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_21710 2a1f8ce0829361e44434b565ca45d660 210 SMART SM00934 2 203 6.8E-43 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 SUPERFAMILY SSF55021 294 359 1.86E-8 T 13-10-2018 RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 Pfam PF02153 Prephenate dehydrogenase 20 278 1.5E-95 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 Gene3D G3DSA:3.40.50.720 2 183 9.6E-53 T 13-10-2018 RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 Pfam PF01842 ACT domain 301 348 9.9E-10 T 13-10-2018 IPR002912 ACT domain RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 SUPERFAMILY SSF48179 178 287 5.1E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 SUPERFAMILY SSF51735 8 174 4.53E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 Gene3D G3DSA:3.30.70.260 300 367 3.3E-7 T 13-10-2018 RA13_11120 0675fe23b035dfa2546b2d42f3f2c9d9 371 Gene3D G3DSA:1.10.3660.10 185 299 5.2E-36 T 13-10-2018 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 SMART SM00322 59 124 9.9E-9 T 13-10-2018 IPR004087 K Homology domain GO:0003676 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 Gene3D G3DSA:3.30.1140.32 107 207 3.2E-40 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 Pfam PF07650 KH domain 37 109 2.0E-21 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 6.7E-39 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 SUPERFAMILY SSF54821 107 205 2.09E-37 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 SUPERFAMILY SSF54814 2 105 2.88E-39 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 Gene3D G3DSA:3.30.300.20 17 106 5.7E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 1.4E-96 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RA13_01020 1855a82e6ecedf66369645dd4a793f68 218 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 38.263 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RA13_09040 23c647926ce7906b14be4712765edcc8 371 Gene3D G3DSA:2.30.30.280 214 277 9.8E-25 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RA13_09040 23c647926ce7906b14be4712765edcc8 371 SUPERFAMILY SSF52402 7 244 3.75E-59 T 13-10-2018 RA13_09040 23c647926ce7906b14be4712765edcc8 371 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 9 358 1.4E-137 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RA13_09040 23c647926ce7906b14be4712765edcc8 371 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 8 359 40.686 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RA13_09040 23c647926ce7906b14be4712765edcc8 371 Gene3D G3DSA:3.40.50.620 1 213 6.8E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_09040 23c647926ce7906b14be4712765edcc8 371 Pfam PF03054 tRNA methyl transferase 9 358 1.8E-150 T 13-10-2018 RA13_09040 23c647926ce7906b14be4712765edcc8 371 Gene3D G3DSA:2.40.30.10 279 371 2.5E-28 T 13-10-2018 RA13_07445 327739f89832389066e7a42ed7c25442 527 PIRSF PIRSF006294 2 525 2.1E-242 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RA13_07445 327739f89832389066e7a42ed7c25442 527 Pfam PF01293 Phosphoenolpyruvate carboxykinase 18 480 1.2E-225 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RA13_07445 327739f89832389066e7a42ed7c25442 527 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 12 527 55.487 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RA13_07445 327739f89832389066e7a42ed7c25442 527 SUPERFAMILY SSF68923 11 212 5.06E-81 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RA13_07445 327739f89832389066e7a42ed7c25442 527 Gene3D G3DSA:3.40.449.10 28 213 4.6E-227 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RA13_07445 327739f89832389066e7a42ed7c25442 527 SUPERFAMILY SSF53795 213 518 1.08E-134 T 13-10-2018 RA13_07445 327739f89832389066e7a42ed7c25442 527 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 1 526 1.1E-273 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 RA13_07445 327739f89832389066e7a42ed7c25442 527 Gene3D G3DSA:2.170.8.10 38 330 4.6E-227 T 13-10-2018 RA13_07445 327739f89832389066e7a42ed7c25442 527 Gene3D G3DSA:3.90.228.20 214 513 4.6E-227 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 SUPERFAMILY SSF52374 5 625 3.13E-145 T 13-10-2018 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Gene3D G3DSA:3.90.740.10 226 410 1.9E-277 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Gene3D G3DSA:3.10.20.590 744 803 1.8E-22 T 13-10-2018 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Gene3D G3DSA:3.40.50.620 32 571 1.9E-277 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 219 399 1.7E-69 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Gene3D G3DSA:1.10.730.10 599 740 5.9E-46 T 13-10-2018 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 SUPERFAMILY SSF50677 224 410 1.99E-56 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Pfam PF09334 tRNA synthetases class I (M) 39 170 1.1E-16 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 4 803 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Pfam PF08264 Anticodon-binding domain of tRNA 655 766 6.2E-19 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Gene3D G3DSA:2.30.210.10 572 588 1.9E-277 T 13-10-2018 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 803 23.283 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 412 603 1.0E-20 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 SUPERFAMILY SSF47323 619 803 1.08E-39 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 126 143 4.8E-57 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 4.8E-57 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 4.8E-57 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 4.8E-57 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 213 232 4.8E-57 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 4.8E-57 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_07560 3f3fe620e1c6d03ff72a54e6ad7973b1 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 168 4.8E-57 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 ProSitePatterns PS00674 AAA-protein family signature. 300 318 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 109 601 3.3E-248 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 Gene3D G3DSA:3.40.50.300 147 330 3.2E-70 T 13-10-2018 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 SUPERFAMILY SSF52540 151 401 1.78E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 Pfam PF01434 Peptidase family M41 391 600 3.9E-90 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 633 38.838 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 SMART SM00382 193 332 1.0E-23 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 Gene3D G3DSA:1.20.58.760 411 617 3.0E-77 T 13-10-2018 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 197 329 2.8E-44 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 SUPERFAMILY SSF140990 411 605 4.58E-74 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 Gene3D G3DSA:1.10.8.60 331 408 8.4E-30 T 13-10-2018 RA13_01360 984d9c2c6b249a0b31725e1bc9d21916 639 Pfam PF06480 FtsH Extracellular 9 103 1.4E-11 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 RA13_18730 cae1f677c48eea6e629d5f8c4cd5dde6 512 Pfam PF00795 Carbon-nitrogen hydrolase 230 490 2.5E-31 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RA13_18730 cae1f677c48eea6e629d5f8c4cd5dde6 512 Gene3D G3DSA:3.60.110.10 227 512 7.7E-60 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RA13_18730 cae1f677c48eea6e629d5f8c4cd5dde6 512 SUPERFAMILY SSF56317 228 495 2.49E-60 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RA13_18730 cae1f677c48eea6e629d5f8c4cd5dde6 512 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 374 394 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site RA13_18730 cae1f677c48eea6e629d5f8c4cd5dde6 512 Pfam PF00583 Acetyltransferase (GNAT) family 27 144 9.0E-12 T 13-10-2018 IPR000182 GNAT domain RA13_18730 cae1f677c48eea6e629d5f8c4cd5dde6 512 SUPERFAMILY SSF55729 16 144 2.74E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_18730 cae1f677c48eea6e629d5f8c4cd5dde6 512 Gene3D G3DSA:3.40.630.30 7 224 1.9E-59 T 13-10-2018 RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 364 372 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 SUPERFAMILY SSF51445 6 466 2.98E-168 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 364 372 4.8E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 406 423 4.8E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 431 443 4.8E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 385 396 4.8E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 298 312 4.8E-17 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 Gene3D G3DSA:3.20.20.80 7 469 2.6E-159 T 13-10-2018 RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 12 26 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RA13_02830 17b937397e7e485f49f90180bafb3c9c 469 Pfam PF00232 Glycosyl hydrolase family 1 5 466 5.1E-148 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 Pfam PF00902 Sec-independent protein translocase protein (TatC) 13 221 1.2E-57 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 11 226 7.7E-72 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 ProSitePatterns PS01218 TatC family signature. 154 173 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 8 242 16.384 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 102 128 1.8E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 10 37 1.8E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 84 102 1.8E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_20410 a1e34216db5b0eba3cf3a2d6bc22d426 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 1.8E-41 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 172 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 412 4.5E-50 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 Gene3D G3DSA:3.40.50.720 1 170 7.8E-73 T 13-10-2018 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 SUPERFAMILY SSF51735 4 168 4.34E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_03210 a72b7a7d30ce60431b17933541054c90 442 Pfam PF02056 Family 4 glycosyl hydrolase 6 187 4.6E-77 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 Gene3D G3DSA:3.90.110.10 171 442 3.1E-105 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 SUPERFAMILY SSF56327 173 439 6.68E-99 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 6.2E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 6.2E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 6.2E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 6.2E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 6.2E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 6.2E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_03210 a72b7a7d30ce60431b17933541054c90 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 6.2E-55 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 Pfam PF00571 CBS domain 147 203 1.5E-4 T 13-10-2018 IPR000644 CBS domain RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 Pfam PF00571 CBS domain 80 133 7.8E-7 T 13-10-2018 IPR000644 CBS domain RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 SUPERFAMILY SSF46785 5 81 2.08E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 PIRSF PIRSF026546 4 210 2.0E-102 T 13-10-2018 IPR016842 Protein of unknown function UCP026546, HtH-CBS RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 SUPERFAMILY SSF54631 69 204 5.68E-21 T 13-10-2018 RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 Gene3D G3DSA:1.10.10.10 1 63 6.7E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 SMART SM00116 86 134 0.0012 T 13-10-2018 IPR000644 CBS domain RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 SMART SM00116 153 204 1.6 T 13-10-2018 IPR000644 CBS domain RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 Pfam PF08279 HTH domain 9 61 7.6E-13 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_09705 afc64120a2dc9a2f28e47236cbc7b7e3 212 Gene3D G3DSA:3.10.580.10 64 212 6.8E-62 T 13-10-2018 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 SUPERFAMILY SSF53633 4 243 5.89E-75 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 Gene3D G3DSA:3.40.1160.10 1 254 6.3E-93 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 SUPERFAMILY SSF55021 328 404 3.36E-23 T 13-10-2018 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 Pfam PF00696 Amino acid kinase family 3 229 5.2E-56 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 Gene3D G3DSA:3.30.70.260 260 337 3.3E-48 T 13-10-2018 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 Gene3D G3DSA:3.30.70.260 255 402 3.3E-48 T 13-10-2018 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 SUPERFAMILY SSF55021 249 324 9.16E-13 T 13-10-2018 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 402 2.5E-159 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 PIRSF PIRSF000726 1 62 2.5E-21 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 PIRSF PIRSF000726 54 409 4.1E-140 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 Pfam PF13840 ACT domain 335 398 8.8E-16 T 13-10-2018 IPR027795 CASTOR, ACT domain RA13_08485 2d5c64478e26f4a32b7c667c2f88879d 409 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 401 7.8E-128 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_09140 331b92711752e497a38c3574be71065c 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 20 51 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RA13_09140 331b92711752e497a38c3574be71065c 158 Pfam PF03449 Transcription elongation factor, N-terminal 8 77 3.7E-32 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RA13_09140 331b92711752e497a38c3574be71065c 158 Gene3D G3DSA:1.10.287.180 5 78 4.7E-32 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RA13_09140 331b92711752e497a38c3574be71065c 158 SUPERFAMILY SSF54534 84 157 1.18E-22 T 13-10-2018 RA13_09140 331b92711752e497a38c3574be71065c 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 8 158 5.0E-60 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RA13_09140 331b92711752e497a38c3574be71065c 158 Gene3D G3DSA:3.10.50.30 80 158 2.1E-27 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RA13_09140 331b92711752e497a38c3574be71065c 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 123 139 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RA13_09140 331b92711752e497a38c3574be71065c 158 SUPERFAMILY SSF46557 6 80 9.29E-28 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RA13_09140 331b92711752e497a38c3574be71065c 158 PIRSF PIRSF006092 1 158 4.0E-54 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RA13_09140 331b92711752e497a38c3574be71065c 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 5 158 33.716 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RA13_09140 331b92711752e497a38c3574be71065c 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 86 158 1.3E-27 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RA13_04570 45dbf3e2cfba225c4babf527f65f2be8 377 Gene3D G3DSA:3.30.300.210 225 377 8.1E-18 T 13-10-2018 IPR038501 Spore germination GerAC superfamily RA13_04570 45dbf3e2cfba225c4babf527f65f2be8 377 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 7 376 5.9E-68 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_04570 45dbf3e2cfba225c4babf527f65f2be8 377 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 206 374 1.4E-23 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_11280 1415eeef80e5e98fd72ef9dd5d1f77eb 202 TIGRFAM TIGR00648 recU: recombination protein U 30 196 2.7E-88 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 RA13_11280 1415eeef80e5e98fd72ef9dd5d1f77eb 202 PIRSF PIRSF037785 22 201 2.3E-76 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 RA13_11280 1415eeef80e5e98fd72ef9dd5d1f77eb 202 Hamap MF_00130 Holliday junction resolvase RecU [recU]. 1 202 97.3 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 RA13_11280 1415eeef80e5e98fd72ef9dd5d1f77eb 202 SUPERFAMILY SSF52980 34 197 1.02E-64 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RA13_11280 1415eeef80e5e98fd72ef9dd5d1f77eb 202 Pfam PF03838 Recombination protein U 31 193 3.6E-63 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 RA13_11280 1415eeef80e5e98fd72ef9dd5d1f77eb 202 Gene3D G3DSA:3.40.1350.10 34 201 3.3E-72 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RA13_03280 fb7f6b1fe1ecb3994bc2f52c7223284f 239 Pfam PF09529 Integral membrane protein (intg_mem_TP0381) 16 232 1.8E-53 T 13-10-2018 IPR011737 Conserved hypothetical protein CHP02206, TP0381 RA13_03280 fb7f6b1fe1ecb3994bc2f52c7223284f 239 TIGRFAM TIGR02206 intg_mem_TP0381: conserved hypothetical integral membrane protein TIGR02206 12 234 5.0E-68 T 13-10-2018 IPR011737 Conserved hypothetical protein CHP02206, TP0381 RA13_14430 54b734dcfa8563bc09318748a32ceadb 599 Pfam PF04740 LXG domain of WXG superfamily 2 201 4.3E-52 T 13-10-2018 IPR006829 LXG domain RA13_14430 54b734dcfa8563bc09318748a32ceadb 599 Pfam PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH 513 594 7.8E-29 T 13-10-2018 IPR026834 LHH RA13_20135 033b481c6ce88ca0e139430605b9ace4 195 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_20135 033b481c6ce88ca0e139430605b9ace4 195 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 187 4.9E-77 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RA13_20135 033b481c6ce88ca0e139430605b9ace4 195 Pfam PF00551 Formyl transferase 2 182 1.0E-63 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_20135 033b481c6ce88ca0e139430605b9ace4 195 Gene3D G3DSA:3.40.50.170 1 194 3.4E-70 T 13-10-2018 RA13_20135 033b481c6ce88ca0e139430605b9ace4 195 SUPERFAMILY SSF53328 2 185 6.8E-59 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_20135 033b481c6ce88ca0e139430605b9ace4 195 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 30.748 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RA13_06850 abd9d8367400c02494d983bbc28b737d 429 Pfam PF00571 CBS domain 218 272 1.5E-7 T 13-10-2018 IPR000644 CBS domain RA13_06850 abd9d8367400c02494d983bbc28b737d 429 Pfam PF00571 CBS domain 285 335 1.0E-6 T 13-10-2018 IPR000644 CBS domain RA13_06850 abd9d8367400c02494d983bbc28b737d 429 Pfam PF01595 Domain of unknown function DUF21 8 201 1.5E-48 T 13-10-2018 IPR002550 CNNM, transmembrane domain RA13_06850 abd9d8367400c02494d983bbc28b737d 429 SUPERFAMILY SSF54631 204 338 8.72E-33 T 13-10-2018 RA13_06850 abd9d8367400c02494d983bbc28b737d 429 Pfam PF03471 Transporter associated domain 352 427 7.3E-16 T 13-10-2018 IPR005170 Transporter-associated domain RA13_06850 abd9d8367400c02494d983bbc28b737d 429 SMART SM01091 351 428 3.1E-20 T 13-10-2018 IPR005170 Transporter-associated domain RA13_06850 abd9d8367400c02494d983bbc28b737d 429 Gene3D G3DSA:3.10.580.10 195 345 1.8E-52 T 13-10-2018 RA13_06850 abd9d8367400c02494d983bbc28b737d 429 Gene3D G3DSA:3.30.465.10 346 429 1.7E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RA13_06850 abd9d8367400c02494d983bbc28b737d 429 SUPERFAMILY SSF56176 349 427 2.73E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RA13_06850 abd9d8367400c02494d983bbc28b737d 429 SMART SM00116 287 335 1.9 T 13-10-2018 IPR000644 CBS domain RA13_06850 abd9d8367400c02494d983bbc28b737d 429 SMART SM00116 225 275 7.7 T 13-10-2018 IPR000644 CBS domain RA13_07760 acd1a60e7b9b72a6c4364a8f5323f10b 106 SUPERFAMILY SSF52833 2 102 3.19E-26 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_07760 acd1a60e7b9b72a6c4364a8f5323f10b 106 Gene3D G3DSA:3.40.30.10 1 105 4.7E-22 T 13-10-2018 RA13_07760 acd1a60e7b9b72a6c4364a8f5323f10b 106 Pfam PF00085 Thioredoxin 10 102 1.3E-16 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RA13_09790 f56e20989154c97bcefa561d244930e5 370 Pfam PF04551 GcpE protein 10 351 1.6E-140 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RA13_09790 f56e20989154c97bcefa561d244930e5 370 Gene3D G3DSA:3.20.20.20 1 259 2.3E-110 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RA13_09790 f56e20989154c97bcefa561d244930e5 370 PIRSF PIRSF004640 1 361 2.5E-156 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RA13_09790 f56e20989154c97bcefa561d244930e5 370 SUPERFAMILY SSF51717 15 236 2.2E-17 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RA13_09790 f56e20989154c97bcefa561d244930e5 370 SUPERFAMILY SSF56014 263 356 3.93E-14 T 13-10-2018 RA13_09790 f56e20989154c97bcefa561d244930e5 370 Gene3D G3DSA:3.30.413.10 261 360 4.3E-36 T 13-10-2018 RA13_09790 f56e20989154c97bcefa561d244930e5 370 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 7 350 7.1E-131 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RA13_09790 f56e20989154c97bcefa561d244930e5 370 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 5 355 34.602 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RA13_01400 533b223e142744753a58f2b9639e8a19 128 Pfam PF00575 S1 RNA binding domain 4 74 8.2E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_01400 533b223e142744753a58f2b9639e8a19 128 Gene3D G3DSA:2.40.50.140 1 84 9.1E-30 T 13-10-2018 RA13_01400 533b223e142744753a58f2b9639e8a19 128 SUPERFAMILY SSF50249 4 84 3.36E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_01400 533b223e142744753a58f2b9639e8a19 128 SMART SM00316 4 74 1.9E-26 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 SUPERFAMILY SSF55681 1 280 1.86E-130 T 13-10-2018 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 281 57.753 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 3 280 4.7E-147 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 Gene3D G3DSA:3.30.930.10 1 204 3.2E-106 T 13-10-2018 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 Gene3D G3DSA:1.20.58.180 205 285 1.2E-36 T 13-10-2018 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 133 153 1.6E-67 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 241 257 1.6E-67 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 76 96 1.6E-67 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 107 131 1.6E-67 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 156 171 1.6E-67 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 55 70 1.6E-67 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09695 08ed26fd9222cdb4057a7c58030ac12b 295 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 1 288 2.9E-169 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_08170 d8e847497a993577785f359e3a5eae93 280 SUPERFAMILY SSF51430 8 274 1.26E-95 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_08170 d8e847497a993577785f359e3a5eae93 280 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 44 61 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 234 249 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 PRINTS PR00069 Aldo-keto reductase signature 130 147 5.9E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 PRINTS PR00069 Aldo-keto reductase signature 164 193 5.9E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 PRINTS PR00069 Aldo-keto reductase signature 40 64 5.9E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 PRINTS PR00069 Aldo-keto reductase signature 100 118 5.9E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 PRINTS PR00069 Aldo-keto reductase signature 201 225 5.9E-51 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 130 147 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 PIRSF PIRSF000097 2 277 5.7E-92 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_08170 d8e847497a993577785f359e3a5eae93 280 Pfam PF00248 Aldo/keto reductase family 31 266 1.9E-52 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_08170 d8e847497a993577785f359e3a5eae93 280 Gene3D G3DSA:3.20.20.100 1 280 3.3E-129 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_14440 37af0bd173cd996b18e39c7cdae1d96a 326 ProSitePatterns PS01284 Thermonuclease family signature 2. 158 168 - T 13-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 RA13_14440 37af0bd173cd996b18e39c7cdae1d96a 326 Gene3D G3DSA:2.40.50.90 75 222 2.0E-50 T 13-10-2018 IPR035437 SNase-like, OB-fold superfamily RA13_14440 37af0bd173cd996b18e39c7cdae1d96a 326 Pfam PF00565 Staphylococcal nuclease homologue 109 217 1.9E-33 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 RA13_14440 37af0bd173cd996b18e39c7cdae1d96a 326 SUPERFAMILY SSF50199 82 221 2.35E-35 T 13-10-2018 RA13_14440 37af0bd173cd996b18e39c7cdae1d96a 326 Pfam PF05901 Excalibur calcium-binding domain 290 325 3.0E-13 T 13-10-2018 IPR008613 Excalibur calcium-binding domain RA13_14440 37af0bd173cd996b18e39c7cdae1d96a 326 SMART SM00318 84 217 2.0E-45 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 RA13_14440 37af0bd173cd996b18e39c7cdae1d96a 326 SMART SM00894 289 325 1.2E-15 T 13-10-2018 IPR008613 Excalibur calcium-binding domain RA13_09540 96edce4bba9ee57bf8940eed7ab2122b 402 TIGRFAM TIGR02867 spore_II_P: stage II sporulation protein P 184 387 3.4E-75 T 13-10-2018 IPR010897 Sporulation stage II, protein P RA13_09540 96edce4bba9ee57bf8940eed7ab2122b 402 Pfam PF07454 Stage II sporulation protein P (SpoIIP) 105 383 5.9E-78 T 13-10-2018 IPR010897 Sporulation stage II, protein P RA13_09540 96edce4bba9ee57bf8940eed7ab2122b 402 SUPERFAMILY SSF53187 243 386 6.91E-7 T 13-10-2018 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 411 4.9E-143 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 Gene3D G3DSA:1.20.5.100 197 228 1.0E-19 T 13-10-2018 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 SUPERFAMILY SSF48179 197 295 2.72E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 183 1.9E-69 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 SMART SM00984 313 415 1.7E-41 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 SUPERFAMILY SSF52413 299 425 1.96E-34 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 PIRSF PIRSF500134 1 433 9.4E-181 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 PIRSF PIRSF000124 1 430 5.2E-146 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 Gene3D G3DSA:3.40.50.720 229 437 4.0E-72 T 13-10-2018 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 Gene3D G3DSA:3.40.50.720 1 195 2.7E-73 T 13-10-2018 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 SUPERFAMILY SSF51735 1 185 1.64E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 313 412 1.3E-29 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_04380 74eb76683944bb91c37942bb09d7b51f 438 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 198 290 4.9E-39 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 ProSitePatterns PS01120 Urease nickel ligands signature. 130 143 - T 13-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 7.5E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 7.5E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 298 315 7.5E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 337 353 7.5E-32 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 Gene3D G3DSA:2.30.40.10 2 482 1.6E-293 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 569 1.3E-293 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 Pfam PF01979 Amidohydrolase family 128 455 2.0E-76 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 SUPERFAMILY SSF51338 2 180 1.49E-65 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 SUPERFAMILY SSF51556 133 569 5.19E-190 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_04145 6b59c8e793424b639ce0756d73f13945 569 ProSitePatterns PS00145 Urease active site. 320 336 - T 13-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 Gene3D G3DSA:3.20.20.140 132 550 1.6E-293 T 13-10-2018 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 Hamap MF_01953 Urease subunit alpha [ureC]. 1 569 57.427 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 2 122 2.9E-57 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04145 6b59c8e793424b639ce0756d73f13945 569 SUPERFAMILY SSF51338 415 479 1.01E-5 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 91 103 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 2 18 3.4E-13 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 191 204 3.4E-13 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 129 143 3.4E-13 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 Gene3D G3DSA:3.90.120.10 396 516 1.2E-15 T 13-10-2018 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 505 523 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 Gene3D G3DSA:3.40.50.150 1 280 1.2E-57 T 13-10-2018 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 4 522 9.0E-47 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 SUPERFAMILY SSF53335 1 523 2.36E-71 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_02270 feb0271da76b166fc5d1e1327722c51d 534 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 523 2.5E-55 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RA13_09175 977df97ee5e5611d6827d0435e81b75a 379 PIRSF PIRSF001434 1 379 9.7E-152 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_09175 977df97ee5e5611d6827d0435e81b75a 379 Gene3D G3DSA:3.40.640.10 2 245 8.2E-96 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_09175 977df97ee5e5611d6827d0435e81b75a 379 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 187 201 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_09175 977df97ee5e5611d6827d0435e81b75a 379 Gene3D G3DSA:3.90.1150.10 246 379 6.9E-55 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_09175 977df97ee5e5611d6827d0435e81b75a 379 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 376 8.3E-162 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_09175 977df97ee5e5611d6827d0435e81b75a 379 SUPERFAMILY SSF53383 8 377 5.85E-124 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_05555 51902fa4b73218867524aedb203028c0 217 SUPERFAMILY SSF161098 13 198 1.7E-40 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05555 51902fa4b73218867524aedb203028c0 217 Gene3D G3DSA:1.10.3720.10 14 208 7.3E-35 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05555 51902fa4b73218867524aedb203028c0 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 198 8.8E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.5E-29 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 SMART SM00357 3 66 2.0E-29 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 Gene3D G3DSA:2.40.50.140 1 66 5.9E-30 T 13-10-2018 RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 SUPERFAMILY SSF50249 1 65 9.04E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 PIRSF PIRSF002599 1 66 4.9E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 PRINTS PR00050 Cold shock protein signature 39 57 5.0E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 PRINTS PR00050 Cold shock protein signature 24 33 5.0E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_11490 d4d4c93025f2abd4554cd96b040af7c8 66 PRINTS PR00050 Cold shock protein signature 4 19 5.0E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 Pfam PF00285 Citrate synthase, C-terminal domain 10 360 3.9E-112 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 PRINTS PR00143 Citrate synthase signature 177 192 8.7E-35 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 PRINTS PR00143 Citrate synthase signature 128 141 8.7E-35 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 PRINTS PR00143 Citrate synthase signature 252 272 8.7E-35 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 PRINTS PR00143 Citrate synthase signature 199 227 8.7E-35 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 PRINTS PR00143 Citrate synthase signature 310 326 8.7E-35 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 PRINTS PR00143 Citrate synthase signature 330 344 8.7E-35 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 PIRSF PIRSF001369 1 372 7.2E-141 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 ProSitePatterns PS00480 Citrate synthase signature. 259 272 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 Gene3D G3DSA:1.10.230.10 225 324 4.8E-108 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 SUPERFAMILY SSF48256 6 367 1.83E-118 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RA13_10265 2bbb350c7ef14300a5e9411766b9303e 372 Gene3D G3DSA:1.10.580.10 33 356 4.8E-108 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 SUPERFAMILY SSF55874 4 213 2.88E-52 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 113 1.3E-11 T 13-10-2018 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Gene3D G3DSA:3.30.230.10 213 325 2.2E-30 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Pfam PF08676 MutL C terminal dimerisation domain 440 581 1.1E-45 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 SMART SM01340 208 326 5.7E-50 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 621 27.554 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 306 2.3E-101 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Gene3D G3DSA:3.30.1370.100 481 574 2.7E-66 T 13-10-2018 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 SUPERFAMILY SSF54211 190 326 3.34E-35 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 SMART SM00853 439 581 1.6E-52 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Gene3D G3DSA:3.30.565.10 1 212 2.2E-63 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Gene3D G3DSA:2.30.42.20 440 623 2.7E-66 T 13-10-2018 RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 SUPERFAMILY SSF118116 435 623 2.22E-53 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily RA13_14645 909edfa4bc43d961514934931c0eb3d2 625 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 209 324 2.1E-34 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 440 450 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 Gene3D G3DSA:3.40.50.150 85 451 1.9E-128 T 13-10-2018 RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 Pfam PF01938 TRAM domain 8 63 9.2E-13 T 13-10-2018 IPR002792 TRAM domain RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 SUPERFAMILY SSF53335 72 457 8.23E-96 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 388 419 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 Gene3D G3DSA:3.40.1350.30 134 289 1.9E-128 T 13-10-2018 RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 20 450 1.1E-212 T 13-10-2018 RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 Gene3D G3DSA:2.40.50.140 1 83 3.5E-23 T 13-10-2018 RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 SUPERFAMILY SSF50249 2 64 2.0E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_20020 0ac9faf0b378f1f9d0b01e5e3e889011 458 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 280 458 2.1E-22 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RA13_18305 72834089036363cfb2f20a6b93ab006e 203 SUPERFAMILY SSF46785 21 131 6.18E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_18305 72834089036363cfb2f20a6b93ab006e 203 Pfam PF01047 MarR family 44 101 5.5E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18305 72834089036363cfb2f20a6b93ab006e 203 SMART SM00347 37 137 2.5E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18305 72834089036363cfb2f20a6b93ab006e 203 Gene3D G3DSA:1.10.10.10 1 167 9.2E-47 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_18305 72834089036363cfb2f20a6b93ab006e 203 Hamap MF_01911 HTH-type transcriptional regulator Hpr [hpr]. 2 185 48.889 T 13-10-2018 IPR023488 HTH-type transcriptional regulator Hpr RA13_18305 72834089036363cfb2f20a6b93ab006e 203 ProSitePatterns PS01117 MarR-type HTH domain signature. 76 110 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RA13_18640 304b4f00aae0641d226ac9397723880a 278 SMART SM00257 27 70 6.7E-14 T 13-10-2018 IPR018392 LysM domain RA13_18640 304b4f00aae0641d226ac9397723880a 278 SMART SM00257 88 131 8.1E-17 T 13-10-2018 IPR018392 LysM domain RA13_18640 304b4f00aae0641d226ac9397723880a 278 Gene3D G3DSA:3.10.350.10 76 147 3.4E-19 T 13-10-2018 IPR036779 LysM domain superfamily RA13_18640 304b4f00aae0641d226ac9397723880a 278 SUPERFAMILY SSF54001 158 278 2.7E-33 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_18640 304b4f00aae0641d226ac9397723880a 278 Gene3D G3DSA:3.10.350.10 24 75 6.4E-16 T 13-10-2018 IPR036779 LysM domain superfamily RA13_18640 304b4f00aae0641d226ac9397723880a 278 Pfam PF00877 NlpC/P60 family 176 276 3.4E-28 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_18640 304b4f00aae0641d226ac9397723880a 278 SUPERFAMILY SSF54106 88 130 9.94E-12 T 13-10-2018 RA13_18640 304b4f00aae0641d226ac9397723880a 278 Pfam PF01476 LysM domain 89 130 1.5E-14 T 13-10-2018 IPR018392 LysM domain RA13_18640 304b4f00aae0641d226ac9397723880a 278 Pfam PF01476 LysM domain 29 69 6.4E-13 T 13-10-2018 IPR018392 LysM domain RA13_18640 304b4f00aae0641d226ac9397723880a 278 Gene3D G3DSA:3.90.1720.10 154 278 1.7E-32 T 13-10-2018 RA13_18640 304b4f00aae0641d226ac9397723880a 278 SUPERFAMILY SSF54106 26 70 4.05E-10 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 47 575 6.6E-218 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 458 473 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 162 181 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 69 94 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 427 445 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 289 308 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 403 421 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 482 499 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 144 162 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 259 275 8.2E-76 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 Pfam PF01019 Gamma-glutamyltranspeptidase 62 577 9.4E-174 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 Gene3D G3DSA:3.60.20.40 403 581 1.3E-73 T 13-10-2018 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 SUPERFAMILY SSF56235 40 582 2.7E-175 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_12490 fef228e9328040d6b26a613e3edaa351 588 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 403 427 - T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 RA13_12490 fef228e9328040d6b26a613e3edaa351 588 Gene3D G3DSA:1.10.246.130 275 402 3.2E-51 T 13-10-2018 RA13_08930 ebd5c0b3ab0c98a3ad5ce87c1df6ec45 381 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 8 375 1.8E-179 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RA13_08930 ebd5c0b3ab0c98a3ad5ce87c1df6ec45 381 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 6 370 57.821 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RA13_08930 ebd5c0b3ab0c98a3ad5ce87c1df6ec45 381 SUPERFAMILY SSF51713 7 371 2.88E-163 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RA13_08930 ebd5c0b3ab0c98a3ad5ce87c1df6ec45 381 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 8 375 1.6E-190 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RA13_08930 ebd5c0b3ab0c98a3ad5ce87c1df6ec45 381 Pfam PF01702 Queuine tRNA-ribosyltransferase 134 367 1.6E-94 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RA13_08930 ebd5c0b3ab0c98a3ad5ce87c1df6ec45 381 Gene3D G3DSA:3.20.20.105 2 375 1.3E-172 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 Gene3D G3DSA:4.10.80.40 736 783 1.1E-62 T 13-10-2018 RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 SUPERFAMILY SSF51126 93 415 9.9E-38 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 Pfam PF12708 Pectate lyase superfamily protein 95 323 3.1E-23 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 Gene3D G3DSA:2.160.20.10 77 542 3.1E-128 T 13-10-2018 IPR012334 Pectin lyase fold RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 Gene3D G3DSA:2.40.300.10 683 854 1.1E-62 T 13-10-2018 RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 SMART SM00710 308 329 610.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 SMART SM00710 462 484 44.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 SMART SM00710 251 273 13.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 SMART SM00710 433 455 2700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 SMART SM00710 274 306 1200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 SMART SM00710 211 233 140.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_14335 07cce2d36ff71ac5a562709bc7fa09d9 859 Pfam PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain 628 855 1.4E-77 T 13-10-2018 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Gene3D G3DSA:3.90.1150.50 1020 1177 2.6E-44 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SUPERFAMILY SSF52540 377 490 5.76E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SUPERFAMILY SSF52540 543 803 2.96E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SMART SM00982 1024 1124 1.2E-37 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SUPERFAMILY SSF143517 1011 1169 2.09E-37 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Pfam PF02559 CarD-like/TRCF domain 500 595 6.9E-32 T 13-10-2018 IPR003711 CarD-like/TRCF domain RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 42 1147 29.033 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SMART SM00490 846 930 5.3E-20 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Gene3D G3DSA:3.40.50.300 498 1008 2.6E-245 T 13-10-2018 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Gene3D G3DSA:3.40.50.11180 35 329 4.9E-67 T 13-10-2018 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SUPERFAMILY SSF52540 14 368 5.96E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Gene3D G3DSA:3.30.2060.10 140 225 4.9E-67 T 13-10-2018 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SMART SM01058 499 596 2.4E-51 T 13-10-2018 IPR003711 CarD-like/TRCF domain RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Pfam PF00270 DEAD/DEAH box helicase 625 784 1.4E-16 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SUPERFAMILY SSF52540 802 1009 6.25E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SMART SM00487 620 810 1.9E-34 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Gene3D G3DSA:2.30.30.840 503 561 2.6E-245 T 13-10-2018 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 157 1098 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Pfam PF00271 Helicase conserved C-terminal domain 828 929 3.9E-18 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Gene3D G3DSA:3.40.50.300 562 801 2.6E-245 T 13-10-2018 RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 SUPERFAMILY SSF141259 491 568 1.2E-26 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily RA13_01440 21d589a1d6183fd8f751f74c2be73da7 1177 Pfam PF03461 TRCF domain 1026 1117 1.0E-26 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 PIRSF PIRSF005962 1 374 6.7E-108 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 Pfam PF07687 Peptidase dimerisation domain 179 269 1.4E-11 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 SUPERFAMILY SSF55031 178 282 2.49E-28 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 6 361 3.2E-91 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 Gene3D G3DSA:3.40.630.10 6 358 4.4E-120 T 13-10-2018 RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 Hamap MF_01692 N-acetyldiaminopimelate deacetylase. 3 372 62.186 T 13-10-2018 IPR023905 Acetyldiaminopimelate deacetylase GO:0009089|GO:0050118 KEGG: 00300+3.5.1.47|MetaCyc: PWY-2941 RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 SUPERFAMILY SSF53187 4 369 4.96E-68 T 13-10-2018 RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 Gene3D G3DSA:3.30.70.360 173 287 4.4E-120 T 13-10-2018 RA13_16100 f859788ad1e4e3d631f0f0a4cd88c737 374 Pfam PF01546 Peptidase family M20/M25/M40 66 368 1.8E-24 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_07695 2de80419a7d47dd4d3204b6f7e97a17a 312 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RA13_07695 2de80419a7d47dd4d3204b6f7e97a17a 312 SUPERFAMILY SSF53686 3 308 3.14E-98 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RA13_07695 2de80419a7d47dd4d3204b6f7e97a17a 312 Gene3D G3DSA:3.40.50.1100 7 304 1.0E-115 T 13-10-2018 RA13_07695 2de80419a7d47dd4d3204b6f7e97a17a 312 Gene3D G3DSA:3.40.50.1100 46 145 1.0E-115 T 13-10-2018 RA13_07695 2de80419a7d47dd4d3204b6f7e97a17a 312 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 294 1.1E-70 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RA13_07695 2de80419a7d47dd4d3204b6f7e97a17a 312 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 308 7.5E-128 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RA13_07695 2de80419a7d47dd4d3204b6f7e97a17a 312 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 308 7.7E-137 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RA13_00175 081c33353e4d055b8219a50a9082ce2b 377 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 198 218 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RA13_00175 081c33353e4d055b8219a50a9082ce2b 377 Gene3D G3DSA:3.40.640.10 30 284 1.7E-83 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_00175 081c33353e4d055b8219a50a9082ce2b 377 Gene3D G3DSA:3.90.1150.10 17 364 1.7E-83 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_00175 081c33353e4d055b8219a50a9082ce2b 377 Pfam PF00266 Aminotransferase class-V 49 340 2.0E-47 T 13-10-2018 IPR000192 Aminotransferase class V domain RA13_00175 081c33353e4d055b8219a50a9082ce2b 377 SUPERFAMILY SSF53383 5 373 5.61E-73 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_06875 57eff4f74a177f620220dda740511790 245 ProDom PD119415 TRANSGLUTAMINASE TRANSFERASE ACYLTRANSFERASE GAMMA-GLUTAMYLTRANSFERASE PROTEIN-GLUTAMINE TGASE SPORULATION TGL 1 244 8.0E-112 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 RA13_06875 57eff4f74a177f620220dda740511790 245 Hamap MF_00727 Protein-glutamine gamma-glutamyltransferase [tgl]. 1 245 49.823 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 RA13_01320 4814483dc9d729e93db2fd55f5ed6152 285 Pfam PF00809 Pterin binding enzyme 28 261 5.7E-88 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RA13_01320 4814483dc9d729e93db2fd55f5ed6152 285 SUPERFAMILY SSF51717 14 278 1.57E-101 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RA13_01320 4814483dc9d729e93db2fd55f5ed6152 285 Gene3D G3DSA:3.20.20.20 7 282 1.4E-114 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RA13_01320 4814483dc9d729e93db2fd55f5ed6152 285 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 27 42 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RA13_01320 4814483dc9d729e93db2fd55f5ed6152 285 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 61 74 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RA13_01320 4814483dc9d729e93db2fd55f5ed6152 285 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 27 276 1.3E-101 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RA13_21655 f6908887069aebe35e2cc1f8637874ac 247 Pfam PF00005 ABC transporter 17 169 1.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_21655 f6908887069aebe35e2cc1f8637874ac 247 PIRSF PIRSF039085 1 245 8.4E-112 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RA13_21655 f6908887069aebe35e2cc1f8637874ac 247 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_21655 f6908887069aebe35e2cc1f8637874ac 247 SUPERFAMILY SSF52540 1 239 2.52E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_21655 f6908887069aebe35e2cc1f8637874ac 247 Gene3D G3DSA:3.40.50.300 1 246 4.8E-74 T 13-10-2018 RA13_21655 f6908887069aebe35e2cc1f8637874ac 247 SMART SM00382 26 223 1.4E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_21490 cb8d93f7b364a1d12a76e5fe121974a8 252 Pfam PF00005 ABC transporter 17 164 2.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_21490 cb8d93f7b364a1d12a76e5fe121974a8 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_21490 cb8d93f7b364a1d12a76e5fe121974a8 252 SMART SM00382 26 213 8.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_21490 cb8d93f7b364a1d12a76e5fe121974a8 252 Gene3D G3DSA:3.40.50.300 1 250 3.3E-67 T 13-10-2018 RA13_21490 cb8d93f7b364a1d12a76e5fe121974a8 252 SUPERFAMILY SSF52540 2 226 7.17E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01790 083531609a99f874515802fd9e59f1b6 370 SUPERFAMILY SSF52540 2 349 9.35E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01790 083531609a99f874515802fd9e59f1b6 370 ProSitePatterns PS00618 RecF protein signature 2. 312 330 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RA13_01790 083531609a99f874515802fd9e59f1b6 370 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 366 2.4E-142 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RA13_01790 083531609a99f874515802fd9e59f1b6 370 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 348 2.1E-19 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RA13_01790 083531609a99f874515802fd9e59f1b6 370 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 370 105.237 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RA13_01790 083531609a99f874515802fd9e59f1b6 370 Gene3D G3DSA:1.20.1050.90 119 311 3.4E-111 T 13-10-2018 RA13_01790 083531609a99f874515802fd9e59f1b6 370 ProSitePatterns PS00617 RecF protein signature 1. 116 136 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 RA13_01790 083531609a99f874515802fd9e59f1b6 370 Gene3D G3DSA:3.40.50.300 6 345 3.4E-111 T 13-10-2018 RA13_15625 4e5433f18db08e1a2da129c86155b166 539 PIRSF PIRSF012535 1 539 1.5E-219 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC RA13_15625 4e5433f18db08e1a2da129c86155b166 539 TIGRFAM TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC 11 537 1.3E-189 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC RA13_15625 4e5433f18db08e1a2da129c86155b166 539 Pfam PF10079 Bacillithiol biosynthesis BshC 1 536 1.2E-170 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC RA13_15625 4e5433f18db08e1a2da129c86155b166 539 Hamap MF_01867 Putative cysteine ligase BshC [bshC]. 1 539 31.722 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC RA13_03940 3fb9c76ecacbc369a5e88e95dbf9523c 318 Pfam PF03547 Membrane transport protein 7 160 1.6E-27 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RA13_03940 3fb9c76ecacbc369a5e88e95dbf9523c 318 Pfam PF03547 Membrane transport protein 164 314 1.3E-23 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RA13_15665 d14aa9256365772aa9333a6183e22898 340 SMART SM00228 118 185 8.1E-4 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_15665 d14aa9256365772aa9333a6183e22898 340 Gene3D G3DSA:2.30.42.10 127 205 5.2E-29 T 13-10-2018 RA13_15665 d14aa9256365772aa9333a6183e22898 340 Pfam PF13180 PDZ domain 127 194 7.2E-15 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_15665 d14aa9256365772aa9333a6183e22898 340 Gene3D G3DSA:3.30.230.10 211 339 6.9E-18 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_15665 d14aa9256365772aa9333a6183e22898 340 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 231 329 1.3E-11 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RA13_15665 d14aa9256365772aa9333a6183e22898 340 SUPERFAMILY SSF54211 223 332 4.55E-21 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_15665 d14aa9256365772aa9333a6183e22898 340 SUPERFAMILY SSF50156 127 211 9.72E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_14070 fba524ae32a618f2a3c4176c95fea001 290 SMART SM00507 196 254 1.6E-7 T 13-10-2018 IPR003615 HNH nuclease RA13_14070 fba524ae32a618f2a3c4176c95fea001 290 Gene3D G3DSA:3.30.40.60 167 284 1.1E-12 T 13-10-2018 RA13_14070 fba524ae32a618f2a3c4176c95fea001 290 Pfam PF14279 HNH endonuclease 209 267 3.8E-9 T 13-10-2018 IPR029471 HNH endonuclease 5 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 623 42.362 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 8 620 5.3E-301 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 Gene3D G3DSA:3.50.50.60 2 226 4.6E-82 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_01835 a6df07a014f30328f2042c2afec191c6 628 Gene3D G3DSA:3.50.50.60 296 458 2.2E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_01835 a6df07a014f30328f2042c2afec191c6 628 Gene3D G3DSA:1.10.150.570 568 620 8.5E-24 T 13-10-2018 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 Pfam PF13932 GidA associated domain 401 615 2.2E-79 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 Pfam PF01134 Glucose inhibited division protein A 9 398 3.2E-170 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 SMART SM01228 545 616 1.0E-41 T 13-10-2018 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 3.9E-6 T 13-10-2018 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 161 3.9E-6 T 13-10-2018 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 Gene3D G3DSA:1.10.10.1800 459 549 1.4E-25 T 13-10-2018 RA13_01835 a6df07a014f30328f2042c2afec191c6 628 SUPERFAMILY SSF51905 7 261 1.14E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21090 a76babac1cc9e20e2b848f11bed9fcf7 290 SUPERFAMILY SSF161111 7 208 3.92E-53 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RA13_21090 a76babac1cc9e20e2b848f11bed9fcf7 290 Pfam PF01545 Cation efflux family 15 206 3.7E-49 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RA13_21090 a76babac1cc9e20e2b848f11bed9fcf7 290 Pfam PF16916 Dimerisation domain of Zinc Transporter 219 286 7.4E-19 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain RA13_21090 a76babac1cc9e20e2b848f11bed9fcf7 290 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 287 6.0E-71 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RA13_21090 a76babac1cc9e20e2b848f11bed9fcf7 290 Gene3D G3DSA:3.30.70.1350 212 288 5.9E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RA13_21090 a76babac1cc9e20e2b848f11bed9fcf7 290 SUPERFAMILY SSF160240 218 288 1.16E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RA13_21090 a76babac1cc9e20e2b848f11bed9fcf7 290 Gene3D G3DSA:1.20.1510.10 11 207 8.0E-54 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RA13_21665 425c17ad5e86ae7687fed373207adcf2 224 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 103 205 1.2E-18 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_21665 425c17ad5e86ae7687fed373207adcf2 224 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 101 224 7.9E-29 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 RA13_21665 425c17ad5e86ae7687fed373207adcf2 224 SUPERFAMILY SSF56214 1 96 3.14E-25 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_21665 425c17ad5e86ae7687fed373207adcf2 224 Gene3D G3DSA:3.90.470.20 104 206 7.8E-81 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_21665 425c17ad5e86ae7687fed373207adcf2 224 SUPERFAMILY SSF56214 103 223 1.31E-30 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_21665 425c17ad5e86ae7687fed373207adcf2 224 Gene3D G3DSA:3.90.470.20 14 219 7.8E-81 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_02625 188b23d42a811e4952a0283f830dd8e7 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.3E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_02625 188b23d42a811e4952a0283f830dd8e7 229 SMART SM00448 2 112 1.0E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_02625 188b23d42a811e4952a0283f830dd8e7 229 SUPERFAMILY SSF52172 1 181 1.05E-36 T 13-10-2018 IPR011006 CheY-like superfamily RA13_02625 188b23d42a811e4952a0283f830dd8e7 229 Pfam PF00072 Response regulator receiver domain 4 112 3.0E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_02625 188b23d42a811e4952a0283f830dd8e7 229 Gene3D G3DSA:1.10.10.10 126 227 1.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_02625 188b23d42a811e4952a0283f830dd8e7 229 Gene3D G3DSA:3.40.50.2300 1 125 5.8E-33 T 13-10-2018 RA13_02625 188b23d42a811e4952a0283f830dd8e7 229 SMART SM00862 150 225 1.6E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_15870 880d809aed3f52ebb0521e6d58cb702f 39 Pfam PF13790 SR1 protein 1 38 2.2E-20 T 13-10-2018 IPR025236 SR1 protein RA13_18145 7bbe7b88214d92e87908baff1df8942b 320 Gene3D G3DSA:3.40.50.1980 28 139 1.5E-33 T 13-10-2018 RA13_18145 7bbe7b88214d92e87908baff1df8942b 320 SUPERFAMILY SSF53807 34 314 3.19E-63 T 13-10-2018 RA13_18145 7bbe7b88214d92e87908baff1df8942b 320 Gene3D G3DSA:3.40.50.1980 140 318 5.4E-46 T 13-10-2018 RA13_18145 7bbe7b88214d92e87908baff1df8942b 320 Pfam PF01497 Periplasmic binding protein 52 293 2.8E-36 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_08750 821170e509ff11092b0ad00455f529ed 288 Pfam PF02163 Peptidase family M50 108 149 1.2E-7 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 RA13_15405 7f5df126e774ae8eb22de73a8eb23dd2 239 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 6 231 5.5E-63 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15405 7f5df126e774ae8eb22de73a8eb23dd2 239 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 3 235 38.664 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15405 7f5df126e774ae8eb22de73a8eb23dd2 239 SUPERFAMILY SSF51366 2 232 5.27E-69 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_15405 7f5df126e774ae8eb22de73a8eb23dd2 239 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 7 229 1.3E-48 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15405 7f5df126e774ae8eb22de73a8eb23dd2 239 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15405 7f5df126e774ae8eb22de73a8eb23dd2 239 Gene3D G3DSA:3.20.20.70 4 238 1.2E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_15405 7f5df126e774ae8eb22de73a8eb23dd2 239 SMART SM00934 5 230 6.4E-88 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_02575 db136e69a3a63f0cea7ce32ef5a5bd79 327 Hamap MF_01668 5-dehydro-2-deoxygluconokinase [iolC]. 7 325 55.847 T 13-10-2018 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes GO:0016310|GO:0047590 KEGG: 00562+2.7.1.92 RA13_02575 db136e69a3a63f0cea7ce32ef5a5bd79 327 Gene3D G3DSA:2.20.150.10 19 115 7.7E-104 T 13-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 RA13_02575 db136e69a3a63f0cea7ce32ef5a5bd79 327 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 11 320 9.0E-121 T 13-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 RA13_02575 db136e69a3a63f0cea7ce32ef5a5bd79 327 Gene3D G3DSA:3.40.1190.20 14 300 7.7E-104 T 13-10-2018 IPR029056 Ribokinase-like RA13_02575 db136e69a3a63f0cea7ce32ef5a5bd79 327 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 265 278 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RA13_02575 db136e69a3a63f0cea7ce32ef5a5bd79 327 Pfam PF00294 pfkB family carbohydrate kinase 12 313 9.2E-69 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RA13_02575 db136e69a3a63f0cea7ce32ef5a5bd79 327 SUPERFAMILY SSF53613 10 321 2.03E-73 T 13-10-2018 IPR029056 Ribokinase-like RA13_17940 4f1e8e1f38bc1ace4b83e9148dbf4cc8 56 Pfam PF09388 Spo0E like sporulation regulatory protein 2 38 3.3E-13 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 RA13_17940 4f1e8e1f38bc1ace4b83e9148dbf4cc8 56 SUPERFAMILY SSF140500 1 41 2.49E-13 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 RA13_17940 4f1e8e1f38bc1ace4b83e9148dbf4cc8 56 Gene3D G3DSA:1.20.58.990 1 52 1.0E-13 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 RA13_19590 1b42158a461a2198f07afc7dd7fc3628 364 Gene3D G3DSA:3.90.440.10 83 194 3.6E-150 T 13-10-2018 RA13_19590 1b42158a461a2198f07afc7dd7fc3628 364 ProSitePatterns PS60001 Nitric oxide synthase (NOS) signature. 66 73 - T 13-10-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 RA13_19590 1b42158a461a2198f07afc7dd7fc3628 364 Gene3D G3DSA:3.90.340.10 6 356 3.6E-150 T 13-10-2018 RA13_19590 1b42158a461a2198f07afc7dd7fc3628 364 SUPERFAMILY SSF56512 4 363 2.35E-166 T 13-10-2018 IPR036119 Nitric oxide synthase, N-terminal domain superfamily GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 RA13_19590 1b42158a461a2198f07afc7dd7fc3628 364 Gene3D G3DSA:3.90.1230.10 195 301 3.6E-150 T 13-10-2018 RA13_19590 1b42158a461a2198f07afc7dd7fc3628 364 Pfam PF02898 Nitric oxide synthase, oxygenase domain 5 363 2.5E-167 T 13-10-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 RA13_19590 1b42158a461a2198f07afc7dd7fc3628 364 PIRSF PIRSF037219 2 364 1.2E-190 T 13-10-2018 IPR017142 Nitric oxide synthase, oxygenase subunit GO:0004517|GO:0006809|GO:0020037 KEGG: 00220+1.14.14.47|KEGG: 00330+1.14.14.47 RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 223 3.2E-7 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 305 317 3.2E-7 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 PRINTS PR00599 Methionine aminopeptidase-1 signature 274 286 3.2E-7 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 Gene3D G3DSA:3.40.350.10 1 127 7.0E-37 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 SUPERFAMILY SSF55920 83 348 1.7E-82 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 Pfam PF01321 Creatinase/Prolidase N-terminal domain 3 127 1.6E-29 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 283 295 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 SUPERFAMILY SSF53092 2 125 5.18E-26 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 Pfam PF00557 Metallopeptidase family M24 136 337 1.4E-65 T 13-10-2018 IPR000994 Peptidase M24 RA13_10100 8925c95e90845c8a2d6eb8c8bc2aa037 353 Gene3D G3DSA:3.90.230.10 128 353 3.1E-87 T 13-10-2018 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SMART SM00091 5 71 1.4E-5 T 13-10-2018 IPR000014 PAS domain RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SMART SM00091 143 209 2.3E-6 T 13-10-2018 IPR000014 PAS domain RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SMART SM00091 267 333 4.4E-10 T 13-10-2018 IPR000014 PAS domain RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SMART SM00387 501 606 8.3E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Gene3D G3DSA:3.30.565.10 461 606 7.6E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Gene3D G3DSA:3.30.450.20 259 382 7.5E-14 T 13-10-2018 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Gene3D G3DSA:3.30.450.20 142 257 4.0E-12 T 13-10-2018 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Pfam PF08447 PAS fold 27 99 9.4E-7 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SUPERFAMILY SSF55785 158 263 4.64E-13 T 13-10-2018 IPR035965 PAS domain superfamily RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Pfam PF00512 His Kinase A (phospho-acceptor) domain 397 456 2.0E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Gene3D G3DSA:3.30.450.20 12 117 5.8E-21 T 13-10-2018 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SUPERFAMILY SSF55785 19 100 5.63E-11 T 13-10-2018 IPR035965 PAS domain superfamily RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SMART SM00388 395 458 2.5E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Gene3D G3DSA:1.10.287.130 383 457 3.8E-17 T 13-10-2018 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 264 385 5.8E-12 T 13-10-2018 IPR000014 PAS domain RA13_16200 849619edfc95369eedef9ed09e77c76c 606 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 145 259 1.2E-12 T 13-10-2018 IPR000014 PAS domain RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Pfam PF00989 PAS fold 144 248 5.7E-15 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Pfam PF00989 PAS fold 267 377 1.0E-15 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SUPERFAMILY SSF47384 392 456 8.44E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SUPERFAMILY SSF55785 252 378 2.54E-14 T 13-10-2018 IPR035965 PAS domain superfamily RA13_16200 849619edfc95369eedef9ed09e77c76c 606 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 605 8.8E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SUPERFAMILY SSF55874 449 605 4.06E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SMART SM00086 215 255 5.3 T 13-10-2018 IPR001610 PAC motif RA13_16200 849619edfc95369eedef9ed09e77c76c 606 SMART SM00086 74 117 5.1 T 13-10-2018 IPR001610 PAC motif RA13_16200 849619edfc95369eedef9ed09e77c76c 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 604 2.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 556 566 2.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 552 2.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16200 849619edfc95369eedef9ed09e77c76c 606 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 585 2.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_01110 03b802bfaee0decc1b823342a606563a 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 29.001 T 13-10-2018 IPR022973 Ribosomal protein L10 RA13_01110 03b802bfaee0decc1b823342a606563a 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 13-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01110 03b802bfaee0decc1b823342a606563a 166 SUPERFAMILY SSF160369 5 160 3.4E-54 T 13-10-2018 RA13_01110 03b802bfaee0decc1b823342a606563a 166 Gene3D G3DSA:3.30.70.1730 5 133 2.1E-41 T 13-10-2018 RA13_01110 03b802bfaee0decc1b823342a606563a 166 Pfam PF00466 Ribosomal protein L10 6 101 7.6E-29 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 Gene3D G3DSA:3.40.50.720 158 292 4.7E-116 T 13-10-2018 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 SUPERFAMILY SSF50129 5 178 3.65E-48 T 13-10-2018 IPR011032 GroES-like superfamily RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 6 347 54.043 T 13-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 138 5.1E-33 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 8 346 3.2E-181 T 13-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 Pfam PF00107 Zinc-binding dehydrogenase 179 307 8.3E-29 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 Gene3D G3DSA:3.90.180.10 22 338 4.7E-116 T 13-10-2018 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 SMART SM00829 17 345 1.6E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RA13_14680 096fdd0c9fe2cc6948a5b0f86f53b09d 347 SUPERFAMILY SSF51735 148 306 8.02E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_16135 7bdd6c054974b9ad0c16c1aec109fc43 63 Pfam PF14156 Antirepressor AbbA 2 62 1.2E-33 T 13-10-2018 IPR025446 Antirepressor AbbA RA13_16135 7bdd6c054974b9ad0c16c1aec109fc43 63 ProDom PD054279 YKZF 6 63 3.0E-26 T 13-10-2018 RA13_19460 a9a19e734b143fa16ef8db7a6ad64b71 391 SUPERFAMILY SSF103473 4 378 8.37E-54 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_19460 a9a19e734b143fa16ef8db7a6ad64b71 391 Pfam PF07690 Major Facilitator Superfamily 211 386 1.2E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19460 a9a19e734b143fa16ef8db7a6ad64b71 391 Gene3D G3DSA:1.20.1250.20 197 390 1.9E-25 T 13-10-2018 RA13_19460 a9a19e734b143fa16ef8db7a6ad64b71 391 Gene3D G3DSA:1.20.1250.20 2 187 7.9E-23 T 13-10-2018 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 10 456 1.6E-207 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 SMART SM00116 161 209 3.1E-8 T 13-10-2018 IPR000644 CBS domain RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 SMART SM00116 98 148 1.3E-8 T 13-10-2018 IPR000644 CBS domain RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 298 310 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 PIRSF PIRSF000130 1 488 7.8E-212 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 SMART SM01240 9 474 0.0 T 13-10-2018 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 Pfam PF00571 CBS domain 97 144 5.8E-8 T 13-10-2018 IPR000644 CBS domain RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 Pfam PF00571 CBS domain 153 204 7.9E-9 T 13-10-2018 IPR000644 CBS domain RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 Gene3D G3DSA:3.20.20.70 1 487 4.1E-227 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 SUPERFAMILY SSF51412 6 478 7.98E-126 T 13-10-2018 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 SUPERFAMILY SSF54631 66 208 5.81E-33 T 13-10-2018 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 474 3.9E-168 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RA13_01705 5b8f123345033cccaf53bec2a8c5509b 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 10 487 86.083 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RA13_08115 34ad4d9bfa35ae92aab5184ae92c188b 371 TIGRFAM TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI 11 358 3.0E-116 T 13-10-2018 IPR014227 Putative transport protein YtvI-like RA13_08115 34ad4d9bfa35ae92aab5184ae92c188b 371 Pfam PF01594 AI-2E family transporter 15 356 7.2E-73 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 Gene3D G3DSA:1.10.150.280 137 207 2.9E-25 T 13-10-2018 RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 SMART SM00278 184 203 0.31 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 SMART SM00278 154 173 0.0049 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 SUPERFAMILY SSF47781 132 206 3.22E-32 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 TIGRFAM TIGR01259 comE: comEA protein 83 206 5.3E-49 T 13-10-2018 IPR004787 Competence protein ComEA RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 142 206 5.3E-31 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 Pfam PF10531 SLBB domain 66 120 3.4E-15 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 Gene3D G3DSA:3.10.560.10 51 136 1.0E-10 T 13-10-2018 RA13_09505 bdbccbb5f29327b86aadb7c036767b5e 207 Pfam PF12836 Helix-hairpin-helix motif 143 205 5.4E-24 T 13-10-2018 RA13_14690 35765e1bdfe8eab669351a79dca32d07 264 Gene3D G3DSA:3.60.21.10 1 264 5.4E-121 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_14690 35765e1bdfe8eab669351a79dca32d07 264 PIRSF PIRSF004789 1 263 7.7E-111 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like RA13_14690 35765e1bdfe8eab669351a79dca32d07 264 SUPERFAMILY SSF56300 1 256 2.91E-94 T 13-10-2018 RA13_14690 35765e1bdfe8eab669351a79dca32d07 264 Pfam PF13277 YmdB-like protein 4 254 1.4E-114 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like RA13_14690 35765e1bdfe8eab669351a79dca32d07 264 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 264 3.1E-133 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like RA13_15600 b5b6049dec702647c4af8f58eb814334 639 SUPERFAMILY SSF54184 584 637 7.46E-11 T 13-10-2018 RA13_15600 b5b6049dec702647c4af8f58eb814334 639 TIGRFAM TIGR02214 spoVD_pbp: stage V sporulation protein D 11 637 2.1E-268 T 13-10-2018 IPR011927 Stage V sporulation protein D RA13_15600 b5b6049dec702647c4af8f58eb814334 639 SUPERFAMILY SSF56601 171 569 1.37E-102 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_15600 b5b6049dec702647c4af8f58eb814334 639 SMART SM00740 580 638 6.2E-16 T 13-10-2018 IPR005543 PASTA domain RA13_15600 b5b6049dec702647c4af8f58eb814334 639 SUPERFAMILY SSF56519 52 220 7.72E-44 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RA13_15600 b5b6049dec702647c4af8f58eb814334 639 Gene3D G3DSA:3.30.450.330 222 560 7.8E-114 T 13-10-2018 RA13_15600 b5b6049dec702647c4af8f58eb814334 639 Gene3D G3DSA:3.90.1310.30 49 220 6.0E-45 T 13-10-2018 RA13_15600 b5b6049dec702647c4af8f58eb814334 639 Pfam PF00905 Penicillin binding protein transpeptidase domain 246 556 5.2E-90 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_15600 b5b6049dec702647c4af8f58eb814334 639 Pfam PF03717 Penicillin-binding Protein dimerisation domain 56 201 3.6E-23 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RA13_15600 b5b6049dec702647c4af8f58eb814334 639 Pfam PF03793 PASTA domain 584 637 1.1E-13 T 13-10-2018 IPR005543 PASTA domain RA13_15600 b5b6049dec702647c4af8f58eb814334 639 Gene3D G3DSA:3.40.710.10 283 478 7.8E-114 T 13-10-2018 RA13_15600 b5b6049dec702647c4af8f58eb814334 639 Gene3D G3DSA:3.30.10.20 580 637 6.0E-9 T 13-10-2018 RA13_10480 64bacc386615764b0551ba004c3db868 369 Pfam PF01594 AI-2E family transporter 23 353 4.2E-82 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RA13_16925 fd778cdec3509bf391fce1d9717d4527 88 Pfam PF10844 Protein of unknown function (DUF2577) 7 58 2.0E-7 T 13-10-2018 IPR022555 Protein of unknown function, DUF2577 RA13_16925 fd778cdec3509bf391fce1d9717d4527 88 ProDom PD028957 PBSX RELATED XKDR ELEMENT LIN1285 PHAGE PHAGE-LIKE YQBR 3 88 1.0E-32 T 13-10-2018 IPR022555 Protein of unknown function, DUF2577 RA13_18460 46f3a7a229dd649699cca4a04ce3c547 206 SUPERFAMILY SSF51735 1 204 3.33E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18460 46f3a7a229dd649699cca4a04ce3c547 206 Gene3D G3DSA:3.40.50.720 1 205 1.7E-36 T 13-10-2018 RA13_18460 46f3a7a229dd649699cca4a04ce3c547 206 Pfam PF13460 NAD(P)H-binding 7 193 3.3E-34 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 SUPERFAMILY SSF56601 53 305 1.52E-74 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 Gene3D G3DSA:3.40.710.10 39 305 2.9E-77 T 13-10-2018 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 ProSitePatterns PS00146 Beta-lactamase class-A active site. 85 100 - T 13-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 PRINTS PR00118 Beta-lactamase class A signature 52 76 6.8E-67 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 PRINTS PR00118 Beta-lactamase class A signature 83 100 6.8E-67 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 PRINTS PR00118 Beta-lactamase class A signature 159 183 6.8E-67 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 PRINTS PR00118 Beta-lactamase class A signature 221 236 6.8E-67 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 PRINTS PR00118 Beta-lactamase class A signature 123 148 6.8E-67 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 PRINTS PR00118 Beta-lactamase class A signature 238 253 6.8E-67 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 PRINTS PR00118 Beta-lactamase class A signature 185 210 6.8E-67 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 RA13_13060 e2dda6c7e7862437ca1dd6b6be19be74 306 Pfam PF13354 Beta-lactamase enzyme family 73 278 5.4E-33 T 13-10-2018 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 PIRSF PIRSF036361 1 462 5.4E-186 T 13-10-2018 IPR011240 Phosphoesterase-related protein YunD RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 Gene3D G3DSA:3.60.21.10 1 279 1.2E-52 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 PRINTS PR01607 Apyrase family signature 3 21 8.9E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 PRINTS PR01607 Apyrase family signature 330 353 8.9E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 PRINTS PR01607 Apyrase family signature 216 236 8.9E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 PRINTS PR01607 Apyrase family signature 414 433 8.9E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 PRINTS PR01607 Apyrase family signature 169 186 8.9E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 PRINTS PR01607 Apyrase family signature 188 211 8.9E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 Pfam PF02872 5'-nucleotidase, C-terminal domain 287 427 2.1E-14 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 SUPERFAMILY SSF56300 4 277 8.54E-67 T 13-10-2018 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 SUPERFAMILY SSF55816 283 461 2.75E-26 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_06305 5be2acbec2ba94ff47a8d9df1df85b09 462 Gene3D G3DSA:3.90.780.10 283 458 1.1E-15 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Gene3D G3DSA:1.10.8.60 277 345 3.2E-30 T 13-10-2018 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 8 445 2.0E-189 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 SMART SM00382 143 271 1.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 144 164 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 176 190 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 242 269 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 405 424 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 208 222 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Pfam PF00308 Bacterial dnaA protein 111 327 1.4E-107 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Gene3D G3DSA:3.40.50.300 96 275 4.5E-55 T 13-10-2018 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 ProSitePatterns PS01008 DnaA protein signature. 405 424 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 5 446 35.239 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Gene3D G3DSA:3.30.300.180 1 82 2.3E-32 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Gene3D G3DSA:1.10.1750.10 346 446 2.4E-36 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 SMART SM00760 355 424 4.7E-42 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 SUPERFAMILY SSF48295 342 446 1.86E-36 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 SUPERFAMILY SSF52540 111 323 4.07E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 356 424 6.2E-31 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RA13_01805 0978881b73969f9074b56e9e8faef6e2 446 Pfam PF11638 DnaA N-terminal domain 7 66 2.2E-18 T 13-10-2018 IPR024633 DnaA N-terminal domain RA13_16065 c8bb7ef1f9e082d76097a6df86d22e24 192 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 190 20.917 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 RA13_16065 c8bb7ef1f9e082d76097a6df86d22e24 192 Gene3D G3DSA:3.90.550.10 6 192 1.0E-38 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_16065 c8bb7ef1f9e082d76097a6df86d22e24 192 SUPERFAMILY SSF53448 3 190 9.91E-21 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_16065 c8bb7ef1f9e082d76097a6df86d22e24 192 Pfam PF12804 MobA-like NTP transferase domain 6 149 7.7E-23 T 13-10-2018 IPR025877 MobA-like NTP transferase RA13_20300 b36c7cdc8fe0ecb2abd42477116650e7 212 Pfam PF00881 Nitroreductase family 14 192 2.3E-31 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_20300 b36c7cdc8fe0ecb2abd42477116650e7 212 SUPERFAMILY SSF55469 9 209 3.53E-59 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_20300 b36c7cdc8fe0ecb2abd42477116650e7 212 Gene3D G3DSA:3.40.109.10 3 212 1.0E-62 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 186 415 5.1E-77 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 Pfam PF02817 e3 binding domain 123 157 1.2E-12 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 Pfam PF00364 Biotin-requiring enzyme 3 75 3.1E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 Gene3D G3DSA:2.40.50.100 1 121 1.8E-25 T 13-10-2018 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 Gene3D G3DSA:4.10.320.10 123 161 1.4E-14 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 SUPERFAMILY SSF52777 186 415 8.01E-85 T 13-10-2018 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 416 1.5E-174 T 13-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 SUPERFAMILY SSF47005 117 160 2.35E-9 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 Gene3D G3DSA:3.30.559.10 186 416 1.2E-87 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12215 dd35535bc0af3d4b2c87270aea804f1d 417 SUPERFAMILY SSF51230 2 92 7.72E-26 T 13-10-2018 IPR011053 Single hybrid motif RA13_05065 5168f71f8744fb1cff0ed34ea832e0b9 212 PIRSF PIRSF000495 1 207 5.2E-70 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RA13_05065 5168f71f8744fb1cff0ed34ea832e0b9 212 Gene3D G3DSA:3.40.50.880 1 212 1.1E-68 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_05065 5168f71f8744fb1cff0ed34ea832e0b9 212 SUPERFAMILY SSF52317 2 204 2.72E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_05065 5168f71f8744fb1cff0ed34ea832e0b9 212 Pfam PF00117 Glutamine amidotransferase class-I 4 199 8.5E-19 T 13-10-2018 IPR017926 Glutamine amidotransferase RA13_05065 5168f71f8744fb1cff0ed34ea832e0b9 212 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 204 35.246 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RA13_05065 5168f71f8744fb1cff0ed34ea832e0b9 212 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 204 4.0E-69 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RA13_16040 02332897c169987309e4a23ee81c5dff 77 SUPERFAMILY SSF54285 1 77 1.57E-15 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RA13_16040 02332897c169987309e4a23ee81c5dff 77 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 77 2.2E-20 T 13-10-2018 RA13_16040 02332897c169987309e4a23ee81c5dff 77 Gene3D G3DSA:3.10.20.30 1 77 2.0E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RA13_16040 02332897c169987309e4a23ee81c5dff 77 Pfam PF02597 ThiS family 4 77 2.5E-12 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 Gene3D G3DSA:3.20.20.70 7 290 9.7E-68 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 PIRSF PIRSF001365 5 291 1.2E-57 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 SMART SM01130 4 291 8.2E-56 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 136 167 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 3.2E-11 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 3.2E-11 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 3.2E-11 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 Pfam PF00701 Dihydrodipicolinate synthetase family 10 287 7.3E-56 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00545 327bcd841f6bb767e525fb66badbf49c 291 SUPERFAMILY SSF51569 10 290 4.29E-63 T 13-10-2018 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 PIRSF PIRSF002162 1 178 4.9E-46 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 155 163 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 SUPERFAMILY SSF56053 84 177 2.39E-34 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 Gene3D G3DSA:3.90.930.12 84 179 9.2E-40 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 PRINTS PR00059 Ribosomal protein L6 signature 100 116 3.8E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 PRINTS PR00059 Ribosomal protein L6 signature 72 97 3.8E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 PRINTS PR00059 Ribosomal protein L6 signature 142 163 3.8E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 SUPERFAMILY SSF56053 1 83 1.04E-26 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 Pfam PF00347 Ribosomal protein L6 91 165 1.7E-20 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 Pfam PF00347 Ribosomal protein L6 11 83 1.5E-22 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 177 1.7E-75 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 Gene3D G3DSA:3.90.930.12 1 83 1.3E-30 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00975 b2a833bfb7b3d788827726ac4b726905 179 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 177 38.524 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RA13_10935 202c4c0bd8285687a414210e91a47501 424 Gene3D G3DSA:3.40.50.10860 43 197 4.8E-149 T 13-10-2018 RA13_10935 202c4c0bd8285687a414210e91a47501 424 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 191 422 5.8E-78 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_10935 202c4c0bd8285687a414210e91a47501 424 SUPERFAMILY SSF53223 17 193 2.02E-65 T 13-10-2018 RA13_10935 202c4c0bd8285687a414210e91a47501 424 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 45 173 6.1E-54 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_10935 202c4c0bd8285687a414210e91a47501 424 Gene3D G3DSA:1.10.8.1210 18 352 4.8E-149 T 13-10-2018 RA13_10935 202c4c0bd8285687a414210e91a47501 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 182 204 1.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_10935 202c4c0bd8285687a414210e91a47501 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 224 244 1.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_10935 202c4c0bd8285687a414210e91a47501 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 102 116 1.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_10935 202c4c0bd8285687a414210e91a47501 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 350 361 1.0E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_10935 202c4c0bd8285687a414210e91a47501 424 PIRSF PIRSF000185 10 424 1.4E-170 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RA13_10935 202c4c0bd8285687a414210e91a47501 424 Gene3D G3DSA:3.40.50.720 198 351 4.8E-149 T 13-10-2018 RA13_10935 202c4c0bd8285687a414210e91a47501 424 Gene3D G3DSA:1.10.8.1210 378 424 9.4E-17 T 13-10-2018 RA13_10935 202c4c0bd8285687a414210e91a47501 424 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 110 123 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_10935 202c4c0bd8285687a414210e91a47501 424 SUPERFAMILY SSF51735 191 423 9.5E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10935 202c4c0bd8285687a414210e91a47501 424 SMART SM00839 193 422 5.0E-93 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 Hamap MF_00008 Thymidylate synthase [thyA]. 5 279 38.73 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 99 279 1.0E-52 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 Gene3D G3DSA:3.30.572.10 2 279 1.1E-119 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 PRINTS PR00108 Thymidylate synthase family signature 174 200 9.0E-34 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 PRINTS PR00108 Thymidylate synthase family signature 55 76 9.0E-34 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 PRINTS PR00108 Thymidylate synthase family signature 130 149 9.0E-34 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 PRINTS PR00108 Thymidylate synthase family signature 156 171 9.0E-34 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 PRINTS PR00108 Thymidylate synthase family signature 212 229 9.0E-34 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 Pfam PF00303 Thymidylate synthase 7 279 1.7E-91 T 13-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 ProSitePatterns PS00091 Thymidylate synthase active site. 141 169 - T 13-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_13575 191cc9bffdbbdcb2443eb25a2375192a 279 SUPERFAMILY SSF55831 3 279 5.23E-99 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RA13_21010 945dc06261f0e06ffd8fbd1a0919a178 133 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 127 6.9E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_21010 945dc06261f0e06ffd8fbd1a0919a178 133 SUPERFAMILY SSF55874 21 127 7.17E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_21010 945dc06261f0e06ffd8fbd1a0919a178 133 SMART SM00387 34 133 8.9E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_21010 945dc06261f0e06ffd8fbd1a0919a178 133 Gene3D G3DSA:3.30.565.10 6 130 1.4E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_10950 3caf0a6419149df91ba68bc3824b42f2 309 Gene3D G3DSA:1.10.101.10 26 108 2.1E-20 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_10950 3caf0a6419149df91ba68bc3824b42f2 309 TIGRFAM TIGR02869 spore_SleB: spore cortex-lytic enzyme 29 308 8.1E-94 T 13-10-2018 IPR014224 Spore cortex-lytic enzyme SleB GO:0003824|GO:0009847 RA13_10950 3caf0a6419149df91ba68bc3824b42f2 309 Gene3D G3DSA:2.40.10.420 274 309 3.8E-21 T 13-10-2018 RA13_10950 3caf0a6419149df91ba68bc3824b42f2 309 Gene3D G3DSA:1.10.10.2520 194 273 5.6E-31 T 13-10-2018 RA13_10950 3caf0a6419149df91ba68bc3824b42f2 309 Pfam PF01471 Putative peptidoglycan binding domain 40 97 2.4E-16 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_10950 3caf0a6419149df91ba68bc3824b42f2 309 SUPERFAMILY SSF47090 30 97 5.69E-19 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_10950 3caf0a6419149df91ba68bc3824b42f2 309 Pfam PF07486 Cell Wall Hydrolase 210 308 8.3E-27 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 Pfam PF04542 Sigma-70 region 2 62 131 1.8E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 Gene3D G3DSA:1.20.120.1810 30 131 4.0E-25 T 13-10-2018 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 58 234 6.1E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 PRINTS PR00046 Major sigma-70 factor signature 205 220 8.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 PRINTS PR00046 Major sigma-70 factor signature 86 99 8.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 PRINTS PR00046 Major sigma-70 factor signature 184 196 8.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 PRINTS PR00046 Major sigma-70 factor signature 220 231 8.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 PIRSF PIRSF000770 1 239 6.8E-81 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 SUPERFAMILY SSF88659 143 237 5.79E-22 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 Gene3D G3DSA:1.10.10.10 167 239 8.7E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 205 231 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 86 99 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 Pfam PF04545 Sigma-70, region 4 180 233 3.7E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 TIGRFAM TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor 8 239 5.3E-134 T 13-10-2018 IPR014200 RNA polymerase sigma-E type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_15525 2e54f8fc63e8e7c30f242b18408c0e5e 239 SUPERFAMILY SSF88946 25 131 5.23E-35 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Gene3D G3DSA:3.30.1360.40 237 333 1.1E-219 T 13-10-2018 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 506 551 4.8E-14 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 760 806 3.9E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 612 655 2.4E-7 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 660 705 7.4E-15 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 710 756 6.2E-15 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 555 604 1.6E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 SUPERFAMILY SSF101904 500 819 5.75E-114 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Gene3D G3DSA:3.90.199.10 33 486 1.1E-219 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 SMART SM00434 12 465 5.0E-294 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 10 807 0.0 T 13-10-2018 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 SUPERFAMILY SSF56719 31 488 2.49E-182 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 472 9.5E-162 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Gene3D G3DSA:2.120.10.90 498 808 1.2E-125 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Gene3D G3DSA:1.10.268.10 370 459 1.1E-219 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RA13_01775 3e8bbf39c581cbbda8e5988a63a143b0 821 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 808 25.086 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RA13_15380 1696db55b4b34918756cc7d6eb4868bb 197 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 8 192 1.1E-95 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_15380 1696db55b4b34918756cc7d6eb4868bb 197 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 24 196 39.97 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_15380 1696db55b4b34918756cc7d6eb4868bb 197 SUPERFAMILY SSF52540 22 194 4.09E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15380 1696db55b4b34918756cc7d6eb4868bb 197 Gene3D G3DSA:3.40.50.300 3 196 2.3E-80 T 13-10-2018 RA13_15380 1696db55b4b34918756cc7d6eb4868bb 197 Pfam PF01583 Adenylylsulphate kinase 26 180 1.1E-74 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 421 438 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 218 234 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 32 57 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 102 120 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 363 381 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 339 357 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 120 139 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 247 266 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 394 409 2.4E-42 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 SUPERFAMILY SSF56235 4 524 2.7E-167 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 Pfam PF01019 Gamma-glutamyltranspeptidase 25 520 3.1E-160 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 Gene3D G3DSA:3.60.20.40 340 525 1.2E-66 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 Gene3D G3DSA:1.10.246.130 234 339 8.9E-32 T 13-10-2018 RA13_04465 5ca9e9b8b628f7102986b416a4b01f9a 525 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 10 517 4.4E-193 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 RA13_05030 d79b8593b7dfc9a764ecc489da9cb889 172 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 106 139 3.8E-9 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_05030 d79b8593b7dfc9a764ecc489da9cb889 172 SUPERFAMILY SSF51161 9 159 2.36E-33 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RA13_05030 d79b8593b7dfc9a764ecc489da9cb889 172 Gene3D G3DSA:2.160.10.10 17 170 4.7E-29 T 13-10-2018 RA13_20700 8424a8d45412d9e18766cc8432896cf2 139 TIGRFAM TIGR02691 arsC_pI258_fam: arsenate reductase (thioredoxin) 6 134 7.6E-74 T 13-10-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 RA13_20700 8424a8d45412d9e18766cc8432896cf2 139 SUPERFAMILY SSF52788 4 136 6.93E-47 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RA13_20700 8424a8d45412d9e18766cc8432896cf2 139 Gene3D G3DSA:3.40.50.2300 1 139 2.1E-60 T 13-10-2018 RA13_20700 8424a8d45412d9e18766cc8432896cf2 139 Hamap MF_01624 Arsenate reductase [arsC]. 1 137 46.107 T 13-10-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 RA13_20700 8424a8d45412d9e18766cc8432896cf2 139 SMART SM00226 4 137 1.6E-66 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RA13_20700 8424a8d45412d9e18766cc8432896cf2 139 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 135 5.1E-25 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 8 341 42.334 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 SMART SM00729 17 226 6.9E-23 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 Pfam PF06463 Molybdenum Cofactor Synthesis C 195 320 1.4E-38 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 Gene3D G3DSA:3.20.20.70 5 341 1.4E-106 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 Pfam PF04055 Radical SAM superfamily 21 186 1.7E-33 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 SUPERFAMILY SSF102114 9 305 2.22E-81 T 13-10-2018 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 Pfam PF13353 4Fe-4S single cluster domain 25 131 2.7E-7 T 13-10-2018 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 23 34 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_04115 5a5a743bddfc2d9f52a25fb14c5d3a9f 341 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 9 341 7.4E-120 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 Gene3D G3DSA:3.90.105.10 26 183 1.7E-117 T 13-10-2018 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 Gene3D G3DSA:2.170.190.11 50 150 1.7E-117 T 13-10-2018 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 Gene3D G3DSA:2.40.340.10 337 406 1.7E-117 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 SUPERFAMILY SSF63882 7 185 4.45E-52 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 SUPERFAMILY SSF53218 186 328 2.49E-37 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 176 3.1E-42 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 323 6.9E-32 T 13-10-2018 IPR001453 MoaB/Mog domain RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 Gene3D G3DSA:3.40.980.10 184 336 1.7E-117 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 SUPERFAMILY SSF63867 339 412 4.84E-18 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 SMART SM00852 189 327 2.9E-34 T 13-10-2018 IPR001453 MoaB/Mog domain RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 Pfam PF03454 MoeA C-terminal region (domain IV) 341 411 1.0E-18 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_16055 b999e63a28c1bdd2f21424710634ea9a 430 Pfam PF00994 Probable molybdopterin binding domain 189 326 2.8E-23 T 13-10-2018 IPR001453 MoaB/Mog domain RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 8 254 9.9E-115 T 13-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 6.0E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 6.0E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 6.0E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 6.0E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 6.0E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 6.0E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 6.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 6.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 6.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 251 1.5E-59 T 13-10-2018 RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 SUPERFAMILY SSF51735 7 253 7.14E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_11375 a2e414963f7132975b115f6f48cfccd1 254 Gene3D G3DSA:3.40.50.720 4 254 1.3E-75 T 13-10-2018 RA13_13510 5926e9567d6b59159f47cef526ef77da 566 Pfam PF07508 Recombinase 197 302 4.0E-16 T 13-10-2018 IPR011109 DNA-binding recombinase domain GO:0000150|GO:0003677 RA13_13510 5926e9567d6b59159f47cef526ef77da 566 ProSitePatterns PS00397 Site-specific recombinases active site. 27 35 - T 13-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RA13_13510 5926e9567d6b59159f47cef526ef77da 566 Gene3D G3DSA:1.10.10.2600 160 280 2.4E-7 T 13-10-2018 IPR038109 DNA-binding recombinase domain superfamily RA13_13510 5926e9567d6b59159f47cef526ef77da 566 Gene3D G3DSA:3.40.50.1390 22 157 2.4E-20 T 13-10-2018 RA13_13510 5926e9567d6b59159f47cef526ef77da 566 Pfam PF13408 Recombinase zinc beta ribbon domain 315 380 1.8E-8 T 13-10-2018 IPR025827 Recombinase zinc beta ribbon domain RA13_13510 5926e9567d6b59159f47cef526ef77da 566 Pfam PF00239 Resolvase, N terminal domain 24 174 8.3E-21 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_13510 5926e9567d6b59159f47cef526ef77da 566 SUPERFAMILY SSF53041 24 175 1.06E-21 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RA13_13510 5926e9567d6b59159f47cef526ef77da 566 SMART SM00857 24 175 1.2E-27 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_00845 80db12ad40acf1cb9e329ed80e4b904a 237 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 43 226 4.0E-49 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_00845 80db12ad40acf1cb9e329ed80e4b904a 237 Gene3D G3DSA:3.40.630.40 39 234 2.6E-55 T 13-10-2018 RA13_00845 80db12ad40acf1cb9e329ed80e4b904a 237 SMART SM00646 115 226 3.5E-36 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_00845 80db12ad40acf1cb9e329ed80e4b904a 237 TIGRFAM TIGR02883 spore_cwlD: N-acetylmuramoyl-L-alanine amidase CwlD 41 228 6.1E-85 T 13-10-2018 IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD MetaCyc: PWY-7883 RA13_00845 80db12ad40acf1cb9e329ed80e4b904a 237 SUPERFAMILY SSF53187 41 230 1.38E-52 T 13-10-2018 RA13_00895 0bc1330b3235c83f17f3d0a05f88dc7c 289 SUPERFAMILY SSF52540 1 240 1.27E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00895 0bc1330b3235c83f17f3d0a05f88dc7c 289 SMART SM00382 32 223 3.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_00895 0bc1330b3235c83f17f3d0a05f88dc7c 289 Pfam PF00005 ABC transporter 25 174 5.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_00895 0bc1330b3235c83f17f3d0a05f88dc7c 289 Gene3D G3DSA:3.40.50.300 1 288 3.6E-78 T 13-10-2018 RA13_00895 0bc1330b3235c83f17f3d0a05f88dc7c 289 TIGRFAM TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase 3 280 9.3E-122 T 13-10-2018 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 RA13_00895 0bc1330b3235c83f17f3d0a05f88dc7c 289 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_18890 7ee6700778a3c0e7d6017c78531a07f4 160 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 5 159 6.0E-73 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RA13_18890 7ee6700778a3c0e7d6017c78531a07f4 160 Gene3D G3DSA:3.40.1280.10 1 160 3.0E-68 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RA13_18890 7ee6700778a3c0e7d6017c78531a07f4 160 SUPERFAMILY SSF75217 6 158 1.37E-45 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RA13_18890 7ee6700778a3c0e7d6017c78531a07f4 160 Pfam PF00588 SpoU rRNA Methylase family 6 148 1.1E-34 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RA13_18890 7ee6700778a3c0e7d6017c78531a07f4 160 PIRSF PIRSF029256 5 160 5.2E-69 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RA13_18890 7ee6700778a3c0e7d6017c78531a07f4 160 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 6 157 34.639 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RA13_17565 5b0eaadf0ecc6573a3f1d1ae1d259b2a 396 SUPERFAMILY SSF51445 112 210 3.42E-7 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_17565 5b0eaadf0ecc6573a3f1d1ae1d259b2a 396 Pfam PF13200 Putative glycosyl hydrolase domain 64 386 4.4E-129 T 13-10-2018 IPR025275 Putative glycosyl hydrolase domain DUF4015 RA13_17290 f79cb5a6100a65a0b14c99655f6e5cd5 277 Pfam PF12686 Protein of unknown function (DUF3800) 5 228 8.6E-9 T 13-10-2018 IPR024524 Protein of unknown function DUF3800 RA13_17290 f79cb5a6100a65a0b14c99655f6e5cd5 277 ProDom PD040045 PLASMID ORF2 ORF2' 50 269 0.005 T 13-10-2018 RA13_06365 1ab90e14d9f9c0bc1d8ed052ef5bd671 352 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 50 63 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RA13_06365 1ab90e14d9f9c0bc1d8ed052ef5bd671 352 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 315 1.9E-75 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RA13_06365 1ab90e14d9f9c0bc1d8ed052ef5bd671 352 TIGRFAM TIGR00260 thrC: threonine synthase 6 322 1.3E-113 T 13-10-2018 IPR004450 Threonine synthase-like RA13_06365 1ab90e14d9f9c0bc1d8ed052ef5bd671 352 PIRSF PIRSF038945 1 347 8.2E-161 T 13-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 RA13_06365 1ab90e14d9f9c0bc1d8ed052ef5bd671 352 Gene3D G3DSA:3.40.50.1100 58 154 1.5E-123 T 13-10-2018 RA13_06365 1ab90e14d9f9c0bc1d8ed052ef5bd671 352 Gene3D G3DSA:3.40.50.1100 9 321 1.5E-123 T 13-10-2018 RA13_06365 1ab90e14d9f9c0bc1d8ed052ef5bd671 352 SUPERFAMILY SSF53686 4 344 6.29E-108 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 TIGRFAM TIGR03332 salvage_mtnW: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 11 409 1.5E-228 T 13-10-2018 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase GO:0000287|GO:0019509|GO:0043715 KEGG: 00270+5.3.2.5|MetaCyc: PWY-4361 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 Gene3D G3DSA:3.20.20.110 124 414 5.2E-104 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 10 102 5.2E-9 T 13-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 SUPERFAMILY SSF54966 5 121 3.27E-30 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 328 408 3.2E-16 T 13-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 133 298 4.9E-21 T 13-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 SUPERFAMILY SSF51649 124 411 4.97E-82 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 Hamap MF_01679 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [mtnW]. 11 409 61.229 T 13-10-2018 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase GO:0000287|GO:0019509|GO:0043715 KEGG: 00270+5.3.2.5|MetaCyc: PWY-4361 RA13_16405 7c61c540fd7151ecedbbb3d508770c49 414 Gene3D G3DSA:3.30.70.150 3 122 1.4E-30 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 RA13_02190 468d910df13b8310a8792be044210b6f 392 ProSitePatterns PS00216 Sugar transport proteins signature 1. 50 66 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_02190 468d910df13b8310a8792be044210b6f 392 SUPERFAMILY SSF103473 5 380 3.01E-45 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_02190 468d910df13b8310a8792be044210b6f 392 Gene3D G3DSA:1.20.1250.20 201 387 2.9E-17 T 13-10-2018 RA13_02190 468d910df13b8310a8792be044210b6f 392 Gene3D G3DSA:1.20.1250.20 1 176 1.3E-21 T 13-10-2018 RA13_02190 468d910df13b8310a8792be044210b6f 392 Pfam PF07690 Major Facilitator Superfamily 209 378 2.5E-14 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 ProSitePatterns PS00217 Sugar transport proteins signature 2. 106 131 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 ProSitePatterns PS00216 Sugar transport proteins signature 1. 296 312 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 Gene3D G3DSA:1.20.1250.20 2 442 2.6E-139 T 13-10-2018 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 9 436 1.7E-121 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 PRINTS PR00171 Sugar transporter signature 101 120 1.7E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 PRINTS PR00171 Sugar transporter signature 252 262 1.7E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 PRINTS PR00171 Sugar transporter signature 364 376 1.7E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 PRINTS PR00171 Sugar transporter signature 18 28 1.7E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 PRINTS PR00171 Sugar transporter signature 341 362 1.7E-25 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 SUPERFAMILY SSF103473 4 438 1.57E-84 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_04620 fe2b30770180a54526cb60c4128f1a62 458 Pfam PF00083 Sugar (and other) transporter 12 439 2.2E-127 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RA13_02370 3f02edcc5569a4f6c863063d6f2d5710 641 PIRSF PIRSF000906 1 641 0.0 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RA13_02370 3f02edcc5569a4f6c863063d6f2d5710 641 Hamap MF_01854 Fructose-1,6-bisphosphatase class 3 [fbp]. 2 641 39.219 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RA13_02370 3f02edcc5569a4f6c863063d6f2d5710 641 Pfam PF06874 Firmicute fructose-1,6-bisphosphatase 4 637 4.7E-284 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RA13_02370 3f02edcc5569a4f6c863063d6f2d5710 641 SUPERFAMILY SSF56300 187 555 4.98E-10 T 13-10-2018 RA13_01350 865f859856c2cbba4ff2bdc34f45f9a3 291 PIRSF PIRSF005261 1 290 3.2E-77 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RA13_01350 865f859856c2cbba4ff2bdc34f45f9a3 291 Pfam PF01430 Hsp33 protein 2 278 5.5E-91 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RA13_01350 865f859856c2cbba4ff2bdc34f45f9a3 291 Gene3D G3DSA:3.90.1280.10 235 291 9.6E-25 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RA13_01350 865f859856c2cbba4ff2bdc34f45f9a3 291 SUPERFAMILY SSF64397 1 239 7.72E-78 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RA13_01350 865f859856c2cbba4ff2bdc34f45f9a3 291 SUPERFAMILY SSF118352 229 288 4.97E-22 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RA13_01350 865f859856c2cbba4ff2bdc34f45f9a3 291 Hamap MF_00117 33 kDa chaperonin [hslO]. 1 289 40.88 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RA13_01350 865f859856c2cbba4ff2bdc34f45f9a3 291 Gene3D G3DSA:3.55.30.10 1 234 9.6E-99 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.644 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 Pfam PF02629 CoA binding domain 6 99 3.9E-30 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 Pfam PF00549 CoA-ligase 151 268 2.9E-19 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 Gene3D G3DSA:3.40.50.720 1 123 1.2E-51 T 13-10-2018 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 PIRSF PIRSF001553 1 291 4.6E-134 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RA13_15135 681898d726038ab2cbe7d7280475d51b 300 SMART SM00881 4 100 2.6E-34 T 13-10-2018 IPR003781 CoA-binding GO:0048037 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site RA13_15135 681898d726038ab2cbe7d7280475d51b 300 Gene3D G3DSA:3.40.50.261 124 289 2.2E-72 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.9E-40 T 13-10-2018 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.9E-40 T 13-10-2018 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.9E-40 T 13-10-2018 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.9E-40 T 13-10-2018 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 288 5.3E-149 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_15135 681898d726038ab2cbe7d7280475d51b 300 SUPERFAMILY SSF51735 1 122 1.55E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_15135 681898d726038ab2cbe7d7280475d51b 300 SUPERFAMILY SSF52210 123 287 1.24E-54 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RA13_18350 d073bd8d9da4e962cdcd69e103e4d991 314 Gene3D G3DSA:2.40.50.140 24 100 4.0E-7 T 13-10-2018 RA13_18350 d073bd8d9da4e962cdcd69e103e4d991 314 SMART SM00471 156 288 1.2E-7 T 13-10-2018 IPR003607 HD/PDEase domain RA13_18350 d073bd8d9da4e962cdcd69e103e4d991 314 Pfam PF01966 HD domain 161 278 3.7E-13 T 13-10-2018 IPR006674 HD domain RA13_18350 d073bd8d9da4e962cdcd69e103e4d991 314 SUPERFAMILY SSF109604 147 279 3.77E-17 T 13-10-2018 RA13_18350 d073bd8d9da4e962cdcd69e103e4d991 314 Hamap MF_01427 3'-5' exoribonuclease YhaM [yhaM]. 1 313 65.857 T 13-10-2018 IPR020873 3'-5' exoribonuclease YhaM GO:0000175 RA13_18350 d073bd8d9da4e962cdcd69e103e4d991 314 Gene3D G3DSA:1.10.3210.10 123 295 9.6E-14 T 13-10-2018 RA13_18350 d073bd8d9da4e962cdcd69e103e4d991 314 SUPERFAMILY SSF50249 31 96 2.18E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PIRSF PIRSF037149 1 805 0.0 T 13-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Pfam PF04324 BFD-like [2Fe-2S] binding domain 416 465 1.7E-13 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Pfam PF04324 BFD-like [2Fe-2S] binding domain 481 530 1.0E-12 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.0E-22 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.0E-22 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.0E-22 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 1.0E-22 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 1.0E-22 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Gene3D G3DSA:3.30.390.30 316 399 1.6E-13 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 SUPERFAMILY SSF51905 143 306 2.37E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 SUPERFAMILY SSF55124 513 635 3.34E-23 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00397 Sirohaem Fe-binding site signature 673 691 1.5E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00397 Sirohaem Fe-binding site signature 630 648 1.5E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 282 6.6E-60 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 791 0.0 T 13-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 SUPERFAMILY SSF56014 627 794 1.2E-48 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.2E-14 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 1.2E-14 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 1.2E-14 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 1.2E-14 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Gene3D G3DSA:3.50.50.60 115 239 1.4E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Gene3D G3DSA:1.10.10.1100 416 470 5.7E-11 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 556 618 4.0E-12 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Gene3D G3DSA:3.30.413.10 625 796 1.4E-37 T 13-10-2018 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 SUPERFAMILY SSF51905 4 192 3.42E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 626 760 1.2E-25 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_21805 1728d20d04ea7394a5170a82ce4dfdfa 805 Gene3D G3DSA:3.50.50.60 7 303 1.4E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 SMART SM00098 44 456 1.5E-235 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 Gene3D G3DSA:1.10.60.40 327 415 7.4E-148 T 13-10-2018 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 ProSitePatterns PS00123 Alkaline phosphatase active site. 98 106 - T 13-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 SUPERFAMILY SSF53649 34 456 1.06E-128 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 Gene3D G3DSA:3.40.720.10 47 446 7.4E-148 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 Pfam PF00245 Alkaline phosphatase 43 454 4.9E-143 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 PRINTS PR00113 Alkaline phosphatase signature 43 63 1.5E-44 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 PRINTS PR00113 Alkaline phosphatase signature 135 155 1.5E-44 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 PRINTS PR00113 Alkaline phosphatase signature 185 195 1.5E-44 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 PRINTS PR00113 Alkaline phosphatase signature 98 113 1.5E-44 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_20570 a7dc1f8c34c59022bfe5f360b6eee73e 462 PRINTS PR00113 Alkaline phosphatase signature 251 280 1.5E-44 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_06550 f216b01be629e4b573d0a71ea018a627 442 TIGRFAM TIGR03926 T7_EssB: type VII secretion protein EssB 8 382 1.3E-139 T 13-10-2018 IPR018778 Type VII secretion system EssB RA13_06550 f216b01be629e4b573d0a71ea018a627 442 Pfam PF10140 WXG100 protein secretion system (Wss), protein YukC 28 382 2.6E-133 T 13-10-2018 IPR018778 Type VII secretion system EssB RA13_06550 f216b01be629e4b573d0a71ea018a627 442 Gene3D G3DSA:1.25.40.680 240 399 1.4E-48 T 13-10-2018 RA13_06550 f216b01be629e4b573d0a71ea018a627 442 Gene3D G3DSA:1.10.510.10 1 218 1.1E-83 T 13-10-2018 RA13_04490 53643c9901b6d859a19c05376a949666 695 Gene3D G3DSA:1.10.10.10 1 68 5.3E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_04490 53643c9901b6d859a19c05376a949666 695 Gene3D G3DSA:1.10.1790.10 191 290 1.5E-9 T 13-10-2018 RA13_04490 53643c9901b6d859a19c05376a949666 695 SUPERFAMILY SSF63520 302 400 1.83E-18 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_04490 53643c9901b6d859a19c05376a949666 695 Gene3D G3DSA:1.10.1790.10 302 401 5.8E-13 T 13-10-2018 RA13_04490 53643c9901b6d859a19c05376a949666 695 Gene3D G3DSA:3.40.50.2300 410 495 4.2E-12 T 13-10-2018 RA13_04490 53643c9901b6d859a19c05376a949666 695 Pfam PF08279 HTH domain 6 48 4.9E-9 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_04490 53643c9901b6d859a19c05376a949666 695 SUPERFAMILY SSF46785 1 46 1.69E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_04490 53643c9901b6d859a19c05376a949666 695 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 551 692 6.1E-35 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_04490 53643c9901b6d859a19c05376a949666 695 Pfam PF00874 PRD domain 199 286 1.1E-9 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_04490 53643c9901b6d859a19c05376a949666 695 Pfam PF00874 PRD domain 310 398 3.2E-16 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_04490 53643c9901b6d859a19c05376a949666 695 SUPERFAMILY SSF55804 546 693 2.88E-39 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_04490 53643c9901b6d859a19c05376a949666 695 SUPERFAMILY SSF52794 411 485 9.94E-9 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_04490 53643c9901b6d859a19c05376a949666 695 Gene3D G3DSA:3.40.930.10 545 694 3.0E-57 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_04490 53643c9901b6d859a19c05376a949666 695 SUPERFAMILY SSF63520 193 287 5.89E-13 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 SUPERFAMILY SSF48498 79 194 3.71E-23 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 6.5E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 6.5E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 Gene3D G3DSA:1.10.357.10 3 196 2.8E-50 T 13-10-2018 RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 SUPERFAMILY SSF46689 2 85 1.1E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 82 193 1.5E-21 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RA13_14630 10d45f329af6204200c4adb7633dc9b2 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 1.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_11830 2dbc54fae327542e01fc1f9fda91320a 307 Gene3D G3DSA:3.10.180.10 5 298 1.1E-110 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_11830 2dbc54fae327542e01fc1f9fda91320a 307 Gene3D G3DSA:3.10.180.10 65 208 1.1E-110 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_11830 2dbc54fae327542e01fc1f9fda91320a 307 SUPERFAMILY SSF54593 1 277 1.17E-43 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_11830 2dbc54fae327542e01fc1f9fda91320a 307 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 263 9.3E-31 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_06695 9488d8922b89296a5761b508ac7fef5b 446 Pfam PF03390 2-hydroxycarboxylate transporter family 29 439 1.2E-159 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RA13_06695 9488d8922b89296a5761b508ac7fef5b 446 TIGRFAM TIGR00783 ccs: citrate carrier protein, CCS family 23 440 1.3E-179 T 13-10-2018 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes RA13_06695 9488d8922b89296a5761b508ac7fef5b 446 PIRSF PIRSF005348 11 445 2.3E-176 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 RA13_12345 0401daf8dc151fd7341f3acc5e8e110c 161 Gene3D G3DSA:3.20.80.10 1 159 7.3E-37 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RA13_12345 0401daf8dc151fd7341f3acc5e8e110c 161 SMART SM00871 2 159 7.5E-14 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding RA13_12345 0401daf8dc151fd7341f3acc5e8e110c 161 SUPERFAMILY SSF55136 7 158 1.83E-13 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RA13_12345 0401daf8dc151fd7341f3acc5e8e110c 161 Pfam PF14526 Integron-associated effector binding protein 7 158 1.5E-21 T 13-10-2018 IPR029441 Integron-associated effector binding protein RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 SUPERFAMILY SSF53335 4 227 3.65E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 20 35 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 Pfam PF01209 ubiE/COQ5 methyltransferase family 1 233 1.7E-112 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 9 233 1.2E-80 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 1 233 35.678 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 141 155 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 Gene3D G3DSA:3.40.50.150 15 233 1.8E-64 T 13-10-2018 RA13_11050 4608bfcb8c462a6eb67fb3ea96d73361 233 TIGRFAM TIGR02752 MenG_heptapren: demethylmenaquinone methyltransferase 3 233 8.3E-138 T 13-10-2018 IPR014122 Demethylmenaquinone methyltransferase GO:0008168|GO:0009234 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RA13_11715 31b7695c84d8d934f39db47134590154 259 Gene3D G3DSA:3.40.630.30 7 253 4.0E-25 T 13-10-2018 RA13_11715 31b7695c84d8d934f39db47134590154 259 Pfam PF00583 Acetyltransferase (GNAT) family 154 242 2.5E-11 T 13-10-2018 IPR000182 GNAT domain RA13_11715 31b7695c84d8d934f39db47134590154 259 SUPERFAMILY SSF55729 154 254 2.1E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_03680 5058300c734359265fec01a8c6e939d1 459 Pfam PF13520 Amino acid permease 28 429 1.2E-61 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_03680 5058300c734359265fec01a8c6e939d1 459 PIRSF PIRSF006060 8 459 2.7E-88 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_03680 5058300c734359265fec01a8c6e939d1 459 Gene3D G3DSA:1.20.1740.10 20 458 3.2E-126 T 13-10-2018 RA13_06640 d83e92aa990ef53db6c332ec1ee8ea4f 768 SUPERFAMILY SSF55874 642 764 7.33E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_06640 d83e92aa990ef53db6c332ec1ee8ea4f 768 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 678 761 8.7E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_06640 d83e92aa990ef53db6c332ec1ee8ea4f 768 Gene3D G3DSA:3.30.565.10 635 768 4.3E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_06640 d83e92aa990ef53db6c332ec1ee8ea4f 768 Pfam PF07730 Histidine kinase 568 637 3.8E-13 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RA13_06640 d83e92aa990ef53db6c332ec1ee8ea4f 768 SMART SM00387 675 768 9.5E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 SUPERFAMILY SSF63520 170 273 3.53E-31 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 Pfam PF03123 CAT RNA binding domain 2 56 2.9E-21 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 SUPERFAMILY SSF63520 57 166 1.44E-32 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 Pfam PF00874 PRD domain 180 272 2.2E-21 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 Pfam PF00874 PRD domain 75 163 2.3E-26 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 ProSitePatterns PS00654 PRD domain signature. 98 110 - T 13-10-2018 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 Gene3D G3DSA:2.30.24.10 1 55 1.0E-23 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 Gene3D G3DSA:1.10.1790.10 64 167 1.3E-41 T 13-10-2018 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 SUPERFAMILY SSF50151 2 54 6.54E-17 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 Gene3D G3DSA:1.10.1790.10 168 277 1.3E-44 T 13-10-2018 RA13_02975 e182c67d2bb86e3ee79ec0b73641cbbb 277 SMART SM01061 1 59 7.0E-27 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 Pfam PF02863 Arginine repressor, C-terminal domain 81 145 1.9E-27 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 Hamap MF_00173 Arginine repressor [argR]. 1 149 72.223 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 Gene3D G3DSA:3.30.1360.40 68 149 4.1E-34 T 13-10-2018 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 Gene3D G3DSA:1.10.10.10 4 67 5.4E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10205 58333ad6768e5f3e5afb94299c202748 149 PRINTS PR01467 Bacterial arginine repressor signature 118 133 2.0E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 PRINTS PR01467 Bacterial arginine repressor signature 21 34 2.0E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 PRINTS PR01467 Bacterial arginine repressor signature 37 52 2.0E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 PRINTS PR01467 Bacterial arginine repressor signature 88 101 2.0E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 87 149 5.0E-29 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 SUPERFAMILY SSF55252 80 148 2.75E-22 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 Pfam PF01316 Arginine repressor, DNA binding domain 1 70 8.6E-32 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 RA13_10205 58333ad6768e5f3e5afb94299c202748 149 SUPERFAMILY SSF46785 5 78 4.54E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_10205 58333ad6768e5f3e5afb94299c202748 149 TIGRFAM TIGR01529 argR_whole: arginine repressor 5 149 2.9E-59 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Pfam PF02142 MGS-like domain 951 1036 1.2E-17 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Gene3D G3DSA:3.30.470.20 120 401 1.9E-123 T 13-10-2018 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SUPERFAMILY SSF52335 935 1054 3.66E-31 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Gene3D G3DSA:3.30.470.20 659 929 3.9E-109 T 13-10-2018 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SMART SM01096 420 540 5.4E-63 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 702 716 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SUPERFAMILY SSF52440 1 127 2.73E-50 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 830 837 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Gene3D G3DSA:3.40.50.1380 930 1063 2.2E-35 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SUPERFAMILY SSF56059 128 399 1.94E-107 T 13-10-2018 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SUPERFAMILY SSF52440 550 668 4.89E-47 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Gene3D G3DSA:3.40.50.20 547 655 7.9E-45 T 13-10-2018 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1057 13.119 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SUPERFAMILY SSF48108 395 546 2.62E-47 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Gene3D G3DSA:1.10.1030.10 402 546 2.8E-42 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 540 1.6E-37 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 666 867 9.3E-41 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 5.6E-77 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SMART SM00851 949 1036 2.4E-26 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Gene3D G3DSA:3.40.50.20 1 116 2.4E-49 T 13-10-2018 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 SUPERFAMILY SSF56059 666 927 7.78E-102 T 13-10-2018 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.535 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1047 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 6.5E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.5E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.5E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.5E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 6.5E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.5E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15420 d973b0a1662f71594b25680b1bfc2b6d 1071 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.5E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_11110 692059a9762d57f5f282cc9f7ce2fb53 267 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 2 260 3.8E-101 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_11110 692059a9762d57f5f282cc9f7ce2fb53 267 Pfam PF00290 Tryptophan synthase alpha chain 5 255 1.2E-95 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_11110 692059a9762d57f5f282cc9f7ce2fb53 267 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 42 55 - T 13-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_11110 692059a9762d57f5f282cc9f7ce2fb53 267 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 6 263 34.451 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_11110 692059a9762d57f5f282cc9f7ce2fb53 267 SUPERFAMILY SSF51366 2 239 2.07E-77 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_11110 692059a9762d57f5f282cc9f7ce2fb53 267 Gene3D G3DSA:3.20.20.70 1 262 8.6E-91 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_00880 febd4103e2b6ea669a9006ae9534fd04 145 ProSitePatterns PS00783 Ribosomal protein L13 signature. 106 128 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 RA13_00880 febd4103e2b6ea669a9006ae9534fd04 145 Pfam PF00572 Ribosomal protein L13 15 139 1.5E-57 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RA13_00880 febd4103e2b6ea669a9006ae9534fd04 145 SUPERFAMILY SSF52161 6 143 2.88E-59 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_00880 febd4103e2b6ea669a9006ae9534fd04 145 PIRSF PIRSF002181 1 143 1.2E-50 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RA13_00880 febd4103e2b6ea669a9006ae9534fd04 145 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 6 142 1.7E-66 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00880 febd4103e2b6ea669a9006ae9534fd04 145 Gene3D G3DSA:3.90.1180.10 1 143 2.3E-61 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_00880 febd4103e2b6ea669a9006ae9534fd04 145 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 144 28.577 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RA13_07240 734a649260264fcc4f7e7da5fa411bf6 484 SUPERFAMILY SSF53756 3 478 2.09E-125 T 13-10-2018 RA13_07240 734a649260264fcc4f7e7da5fa411bf6 484 Gene3D G3DSA:3.40.50.2000 250 459 1.1E-180 T 13-10-2018 RA13_07240 734a649260264fcc4f7e7da5fa411bf6 484 Pfam PF00534 Glycosyl transferases group 1 287 439 5.6E-13 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_07240 734a649260264fcc4f7e7da5fa411bf6 484 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 2 473 6.7E-175 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 RA13_07240 734a649260264fcc4f7e7da5fa411bf6 484 Pfam PF08323 Starch synthase catalytic domain 2 236 1.1E-84 T 13-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 RA13_07240 734a649260264fcc4f7e7da5fa411bf6 484 Gene3D G3DSA:3.40.50.2000 3 473 1.1E-180 T 13-10-2018 RA13_07240 734a649260264fcc4f7e7da5fa411bf6 484 Hamap MF_00484 Glycogen synthase [glgA]. 1 475 46.15 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 RA13_07305 333853adfb774894ce80462869e92e40 276 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 24 271 8.9E-86 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 RA13_07305 333853adfb774894ce80462869e92e40 276 Pfam PF00561 alpha/beta hydrolase fold 26 258 5.1E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_07305 333853adfb774894ce80462869e92e40 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 3.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_07305 333853adfb774894ce80462869e92e40 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 3.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_07305 333853adfb774894ce80462869e92e40 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 3.4E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_07305 333853adfb774894ce80462869e92e40 276 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 14 272 35.773 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 RA13_07305 333853adfb774894ce80462869e92e40 276 Gene3D G3DSA:3.40.50.1820 13 272 2.4E-61 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_07305 333853adfb774894ce80462869e92e40 276 SUPERFAMILY SSF53474 5 271 2.64E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_15280 ce12f3e83818506d7d3d4f33d96b6e05 214 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 4 210 1.1E-67 T 13-10-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RA13_15280 ce12f3e83818506d7d3d4f33d96b6e05 214 SUPERFAMILY SSF63999 2 130 4.71E-34 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RA13_15280 ce12f3e83818506d7d3d4f33d96b6e05 214 SMART SM00983 142 208 1.7E-24 T 13-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RA13_15280 ce12f3e83818506d7d3d4f33d96b6e05 214 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 20 126 1.0E-19 T 13-10-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RA13_15280 ce12f3e83818506d7d3d4f33d96b6e05 214 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 143 207 2.7E-18 T 13-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RA13_15280 ce12f3e83818506d7d3d4f33d96b6e05 214 Gene3D G3DSA:3.40.50.10240 1 214 4.3E-81 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RA13_15280 ce12f3e83818506d7d3d4f33d96b6e05 214 SUPERFAMILY SSF63862 133 211 1.28E-15 T 13-10-2018 IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 RA13_00900 e6f5e376d7ee6745fb3a3b3da997a2b3 281 Pfam PF00005 ABC transporter 25 171 9.8E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_00900 e6f5e376d7ee6745fb3a3b3da997a2b3 281 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_00900 e6f5e376d7ee6745fb3a3b3da997a2b3 281 TIGRFAM TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase 7 275 6.1E-118 T 13-10-2018 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 RA13_00900 e6f5e376d7ee6745fb3a3b3da997a2b3 281 Gene3D G3DSA:3.40.50.300 3 278 1.4E-82 T 13-10-2018 RA13_00900 e6f5e376d7ee6745fb3a3b3da997a2b3 281 SUPERFAMILY SSF52540 5 231 7.92E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00900 e6f5e376d7ee6745fb3a3b3da997a2b3 281 SMART SM00382 34 219 3.8E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Gene3D G3DSA:3.90.1440.10 227 348 0.0 T 13-10-2018 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Pfam PF02810 SEC-C motif 821 839 7.7E-8 T 13-10-2018 IPR004027 SEC-C motif RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Gene3D G3DSA:1.10.1200.230 621 705 0.0 T 13-10-2018 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 SUPERFAMILY SSF81886 571 829 5.89E-78 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily RA13_04885 12784b6432fa86f3dde8d765d13be998 841 SUPERFAMILY SSF81767 225 348 1.57E-47 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 781 19.608 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 SUPERFAMILY SSF52540 397 568 1.3E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Gene3D G3DSA:3.40.50.300 397 570 0.0 T 13-10-2018 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 SMART SM00958 226 338 9.4E-69 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Gene3D G3DSA:1.10.3060.10 571 772 0.0 T 13-10-2018 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 26 496 2.6E-244 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Gene3D G3DSA:3.10.450.50 773 840 1.9E-8 T 13-10-2018 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Pfam PF01043 SecA preprotein cross-linking domain 230 338 1.6E-42 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Pfam PF07517 SecA DEAD-like domain 7 382 8.0E-128 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 ProSitePatterns PS01312 SecA family signature. 480 495 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Gene3D G3DSA:3.40.50.300 14 396 0.0 T 13-10-2018 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 SMART SM00957 5 382 2.8E-281 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 SUPERFAMILY SSF52540 6 395 1.21E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04885 12784b6432fa86f3dde8d765d13be998 841 Pfam PF07516 SecA Wing and Scaffold domain 568 778 3.2E-64 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 PRINTS PR00906 SecA protein signature 393 406 8.8E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 PRINTS PR00906 SecA protein signature 115 125 8.8E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 PRINTS PR00906 SecA protein signature 99 113 8.8E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 PRINTS PR00906 SecA protein signature 356 373 8.8E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 PRINTS PR00906 SecA protein signature 168 188 8.8E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 PRINTS PR00906 SecA protein signature 61 85 8.8E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_04885 12784b6432fa86f3dde8d765d13be998 841 PRINTS PR00906 SecA protein signature 319 341 8.8E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 SUPERFAMILY SSF54999 5 102 6.41E-39 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 7.9E-37 T 13-10-2018 IPR027486 Ribosomal protein S10 domain RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.3E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.3E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.3E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 SMART SM01403 7 101 5.7E-61 T 13-10-2018 IPR027486 Ribosomal protein S10 domain RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 3.4E-47 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 28.352 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01055 e3951e97f9f82491c34b4f58bf503c25 102 Gene3D G3DSA:3.30.70.600 1 102 1.1E-38 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RA13_14665 505489b5a568efec849b1867f59cb731 509 Pfam PF00919 Uncharacterized protein family UPF0004 67 168 2.5E-29 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RA13_14665 505489b5a568efec849b1867f59cb731 509 Gene3D G3DSA:3.80.30.20 210 443 7.7E-90 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RA13_14665 505489b5a568efec849b1867f59cb731 509 Pfam PF04055 Radical SAM superfamily 215 386 5.0E-33 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_14665 505489b5a568efec849b1867f59cb731 509 SMART SM00729 211 429 4.0E-63 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RA13_14665 505489b5a568efec849b1867f59cb731 509 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 215 235 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RA13_14665 505489b5a568efec849b1867f59cb731 509 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 67 499 6.3E-165 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RA13_14665 505489b5a568efec849b1867f59cb731 509 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 67 502 1.8E-218 T 13-10-2018 RA13_14665 505489b5a568efec849b1867f59cb731 509 Gene3D G3DSA:3.40.50.12160 66 201 2.1E-35 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RA13_14665 505489b5a568efec849b1867f59cb731 509 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 66 503 74.197 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RA13_14665 505489b5a568efec849b1867f59cb731 509 Pfam PF01938 TRAM domain 441 502 7.8E-16 T 13-10-2018 IPR002792 TRAM domain RA13_14665 505489b5a568efec849b1867f59cb731 509 SUPERFAMILY SSF102114 199 434 3.53E-62 T 13-10-2018 RA13_06930 bc39d567dbb95fc969dd629682a7d51d 327 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 6.7E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RA13_06930 bc39d567dbb95fc969dd629682a7d51d 327 SUPERFAMILY SSF51735 2 152 1.02E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06930 bc39d567dbb95fc969dd629682a7d51d 327 SUPERFAMILY SSF55347 127 291 4.25E-29 T 13-10-2018 RA13_06930 bc39d567dbb95fc969dd629682a7d51d 327 Gene3D G3DSA:3.30.360.10 134 327 3.4E-63 T 13-10-2018 RA13_06930 bc39d567dbb95fc969dd629682a7d51d 327 Gene3D G3DSA:3.40.50.720 1 133 3.1E-37 T 13-10-2018 RA13_04075 9c0ca474e2cd3951aa43de292c31f666 246 Gene3D G3DSA:3.30.360.40 171 246 2.3E-32 T 13-10-2018 RA13_04075 9c0ca474e2cd3951aa43de292c31f666 246 Gene3D G3DSA:3.30.2030.10 31 170 1.4E-44 T 13-10-2018 RA13_04075 9c0ca474e2cd3951aa43de292c31f666 246 Pfam PF08680 TATA-box binding 48 246 4.6E-57 T 13-10-2018 IPR014794 TATA-box binding RA13_04075 9c0ca474e2cd3951aa43de292c31f666 246 SUPERFAMILY SSF143842 32 244 6.41E-70 T 13-10-2018 IPR036209 YwmB-like superfamily RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 Gene3D G3DSA:1.10.287.1080 113 206 9.6E-34 T 13-10-2018 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 52 101 2.0E-22 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 3 106 29.196 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 114 200 21.384 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 117 200 1.7E-32 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 117 204 7.5E-20 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 SUPERFAMILY SSF101386 116 204 9.72E-28 T 13-10-2018 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 5 205 38.827 T 13-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 Gene3D G3DSA:3.10.20.400 1 93 4.2E-40 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 SUPERFAMILY SSF141734 4 107 2.35E-47 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RA13_05080 3f260ebe0bb188fc5fef0b0621214dad 208 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 30 102 6.0E-34 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 SUPERFAMILY SSF46911 6 78 1.7E-29 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 7 78 21.484 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 Gene3D G3DSA:4.10.640.10 3 78 1.0E-28 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 PRINTS PR00974 Ribosomal protein S18 family signature 43 50 1.7E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 PRINTS PR00974 Ribosomal protein S18 family signature 33 43 1.7E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 PRINTS PR00974 Ribosomal protein S18 family signature 51 65 1.7E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 PRINTS PR00974 Ribosomal protein S18 family signature 65 75 1.7E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 TIGRFAM TIGR00165 S18: ribosomal protein bS18 10 77 7.9E-36 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 25 76 3.0E-22 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 ProSitePatterns PS00057 Ribosomal protein S18 signature. 26 49 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01900 4b5c7e1d35d4c2ca36263903791ab439 79 Pfam PF01084 Ribosomal protein S18 23 73 3.4E-26 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_16105 4d823de5df86511e6a71c854a2415aec 236 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 118 3.5E-4 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_16105 4d823de5df86511e6a71c854a2415aec 236 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 156 2.4E-10 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_16105 4d823de5df86511e6a71c854a2415aec 236 Pfam PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal 4 87 9.9E-36 T 13-10-2018 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 RA13_16105 4d823de5df86511e6a71c854a2415aec 236 Gene3D G3DSA:3.30.70.250 1 84 5.3E-36 T 13-10-2018 RA13_16105 4d823de5df86511e6a71c854a2415aec 236 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 165 198 2.6E-8 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_16105 4d823de5df86511e6a71c854a2415aec 236 Hamap MF_01691 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [dapH]. 1 235 45.293 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 RA13_16105 4d823de5df86511e6a71c854a2415aec 236 TIGRFAM TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 6 236 3.2E-118 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 RA13_16105 4d823de5df86511e6a71c854a2415aec 236 SUPERFAMILY SSF51161 90 223 6.94E-49 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RA13_16105 4d823de5df86511e6a71c854a2415aec 236 Gene3D G3DSA:2.160.10.10 85 236 2.0E-50 T 13-10-2018 RA13_16105 4d823de5df86511e6a71c854a2415aec 236 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 174 202 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 SMART SM00420 6 58 1.4E-14 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.5E-5 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.5E-5 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 Gene3D G3DSA:1.10.10.10 1 58 2.6E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 SMART SM01134 73 232 9.7E-66 T 13-10-2018 RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 SUPERFAMILY SSF46785 4 77 6.84E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 Pfam PF00455 DeoR C terminal sensor domain 76 231 5.3E-50 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 SUPERFAMILY SSF100950 75 232 3.59E-27 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_04340 38c9bbb8866c4b1395e306ce611469d7 254 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.2E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_18825 7cb086d320fad933d08f82dba865f756 232 SUPERFAMILY SSF52540 3 227 5.95E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18825 7cb086d320fad933d08f82dba865f756 232 Gene3D G3DSA:3.40.50.300 1 230 1.7E-54 T 13-10-2018 RA13_18825 7cb086d320fad933d08f82dba865f756 232 Pfam PF00005 ABC transporter 18 153 5.9E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_18825 7cb086d320fad933d08f82dba865f756 232 SMART SM00382 27 203 8.8E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_08520 c30d74abf07855cbe97e41feb64b2728 146 Gene3D G3DSA:1.10.10.10 2 146 6.7E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08520 c30d74abf07855cbe97e41feb64b2728 146 SUPERFAMILY SSF46785 14 143 9.1E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_08520 c30d74abf07855cbe97e41feb64b2728 146 Pfam PF01047 MarR family 36 94 1.5E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_08520 c30d74abf07855cbe97e41feb64b2728 146 SMART SM00347 29 129 7.6E-23 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_07835 3cc1f9f09b41bbc6b68fb32d0d3ca17d 572 SUPERFAMILY SSF56801 15 562 6.15E-162 T 13-10-2018 RA13_07835 3cc1f9f09b41bbc6b68fb32d0d3ca17d 572 Gene3D G3DSA:3.40.50.12780 15 455 3.5E-119 T 13-10-2018 RA13_07835 3cc1f9f09b41bbc6b68fb32d0d3ca17d 572 Pfam PF00501 AMP-binding enzyme 51 462 5.2E-93 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_07835 3cc1f9f09b41bbc6b68fb32d0d3ca17d 572 Pfam PF13193 AMP-binding enzyme C-terminal domain 471 549 3.8E-24 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_07835 3cc1f9f09b41bbc6b68fb32d0d3ca17d 572 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_07835 3cc1f9f09b41bbc6b68fb32d0d3ca17d 572 Gene3D G3DSA:3.30.300.30 458 571 2.9E-28 T 13-10-2018 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 Gene3D G3DSA:3.40.800.20 1 353 6.6E-101 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01270 Histone deacetylase superfamily signature 248 258 4.0E-17 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01270 Histone deacetylase superfamily signature 162 177 4.0E-17 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01270 Histone deacetylase superfamily signature 129 152 4.0E-17 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 SUPERFAMILY SSF52768 4 362 4.46E-108 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 Pfam PF00850 Histone deacetylase domain 21 315 5.9E-74 T 13-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 15 35 4.2E-57 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 85 99 4.2E-57 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 349 368 4.2E-57 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 312 331 4.2E-57 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 332 348 4.2E-57 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 106 119 4.2E-57 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RA13_07820 02e8a70790f2f47b4ccb21c4f6d3ea94 389 PRINTS PR01272 Acetoin utilisation ACUC protein signature 273 289 4.2E-57 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 RA13_06925 89c6a2db83c15a7e3fd8dff4766740e3 174 Gene3D G3DSA:3.40.50.880 2 174 4.8E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_06925 89c6a2db83c15a7e3fd8dff4766740e3 174 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 7 171 3.7E-49 T 13-10-2018 IPR006286 Deglycase PfpI RA13_06925 89c6a2db83c15a7e3fd8dff4766740e3 174 Pfam PF01965 DJ-1/PfpI family 6 168 7.1E-46 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RA13_06925 89c6a2db83c15a7e3fd8dff4766740e3 174 SUPERFAMILY SSF52317 5 173 2.72E-46 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 23 905 0.0 T 13-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 SUPERFAMILY SSF53732 10 641 2.88E-221 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 Gene3D G3DSA:3.30.499.20 10 379 8.0E-158 T 13-10-2018 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 ProSitePatterns PS01244 Aconitase family signature 2. 507 520 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 Pfam PF00330 Aconitase family (aconitate hydratase) 84 576 8.2E-173 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 Pfam PF00694 Aconitase C-terminal domain 706 833 8.1E-47 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 Gene3D G3DSA:1.10.1440.20 605 666 4.0E-24 T 13-10-2018 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 Gene3D G3DSA:3.20.19.10 669 906 3.6E-102 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 SUPERFAMILY SSF52016 645 904 8.24E-88 T 13-10-2018 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 Gene3D G3DSA:3.30.499.10 380 604 2.7E-98 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 445 456 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 379 393 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 209 222 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 507 520 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 152 165 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 223 238 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 299 312 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 176 184 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 PRINTS PR00415 Aconitase family signature 285 298 3.2E-40 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_12730 36ed205da9eb4a663cd76aada3871c23 907 ProSitePatterns PS00450 Aconitase family signature 1. 441 457 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RA13_04185 a3b6712762000e4c90aedc9e0d38339e 196 TIGRFAM TIGR03585 PseH: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 5 159 2.1E-41 T 13-10-2018 IPR020036 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase RA13_04185 a3b6712762000e4c90aedc9e0d38339e 196 Pfam PF13420 Acetyltransferase (GNAT) domain 6 155 1.2E-15 T 13-10-2018 RA13_04185 a3b6712762000e4c90aedc9e0d38339e 196 SUPERFAMILY SSF55729 5 163 3.23E-31 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_04185 a3b6712762000e4c90aedc9e0d38339e 196 Gene3D G3DSA:3.40.630.30 1 170 1.4E-44 T 13-10-2018 RA13_04820 4ffc8ad087d9bc03861e90c987d7b783 160 SUPERFAMILY SSF140566 2 130 2.35E-16 T 13-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 RA13_04820 4ffc8ad087d9bc03861e90c987d7b783 160 Gene3D G3DSA:1.20.58.300 2 130 9.4E-8 T 13-10-2018 RA13_04820 4ffc8ad087d9bc03861e90c987d7b783 160 Pfam PF05130 FlgN protein 1 144 5.3E-26 T 13-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 PRINTS PR00095 Anthranilate synthase component I signature 441 455 6.3E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 PRINTS PR00095 Anthranilate synthase component I signature 426 440 6.3E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 PRINTS PR00095 Anthranilate synthase component I signature 346 359 6.3E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 PRINTS PR00095 Anthranilate synthase component I signature 332 345 6.3E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 Pfam PF04715 Anthranilate synthase component I, N terminal region 29 167 1.0E-28 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 29 493 1.4E-185 T 13-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 SUPERFAMILY SSF56322 17 497 9.55E-146 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 Gene3D G3DSA:3.60.120.10 1 502 1.2E-163 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_11085 25ce84428c0297de2025d3112c3047e8 515 Pfam PF00425 chorismate binding enzyme 231 484 1.6E-94 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RA13_03020 a19c654a3797f083457530bb2aa204b2 234 SMART SM00882 7 218 3.1E-95 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_03020 a19c654a3797f083457530bb2aa204b2 234 Pfam PF01144 Coenzyme A transferase 8 216 2.0E-79 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_03020 a19c654a3797f083457530bb2aa204b2 234 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 5 216 2.3E-79 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 RA13_03020 a19c654a3797f083457530bb2aa204b2 234 Gene3D G3DSA:3.40.1080.10 2 228 3.7E-103 T 13-10-2018 RA13_03020 a19c654a3797f083457530bb2aa204b2 234 SUPERFAMILY SSF100950 5 229 7.85E-91 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_03020 a19c654a3797f083457530bb2aa204b2 234 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 19 34 - T 13-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Gene3D G3DSA:3.40.50.300 5 200 5.2E-67 T 13-10-2018 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Gene3D G3DSA:2.40.50.250 485 601 1.8E-128 T 13-10-2018 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 SUPERFAMILY SSF54980 400 515 2.06E-29 T 13-10-2018 IPR035647 EF-G domain III/V-like RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Gene3D G3DSA:3.30.70.240 391 484 1.8E-128 T 13-10-2018 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 145 1.7E-22 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Pfam PF03144 Elongation factor Tu domain 2 221 291 3.3E-14 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 SUPERFAMILY SSF50447 154 301 2.7E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 SUPERFAMILY SSF54980 304 389 3.96E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Pfam PF00009 Elongation factor Tu GTP binding domain 7 197 1.3E-56 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 PRINTS PR00315 GTP-binding elongation factor signature 89 100 3.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 PRINTS PR00315 GTP-binding elongation factor signature 125 134 3.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 PRINTS PR00315 GTP-binding elongation factor signature 9 22 3.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 PRINTS PR00315 GTP-binding elongation factor signature 53 61 3.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 PRINTS PR00315 GTP-binding elongation factor signature 73 83 3.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Pfam PF00679 Elongation factor G C-terminus 399 479 6.3E-25 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 SUPERFAMILY SSF52540 4 208 2.66E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Gene3D G3DSA:3.30.70.870 308 592 1.8E-128 T 13-10-2018 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 SMART SM00838 397 485 6.6E-5 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Pfam PF14492 Elongation Factor G, domain II 330 379 3.0E-6 T 13-10-2018 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 601 2.8E-290 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 RA13_15810 5816b1b1f651dbe4c6c86ca0055bf857 612 Gene3D G3DSA:2.40.30.10 201 301 1.4E-33 T 13-10-2018 RA13_03475 c1301fb5a7451679256a365ed2e170ef 249 PIRSF PIRSF005426 1 249 2.3E-91 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 RA13_03475 c1301fb5a7451679256a365ed2e170ef 249 Pfam PF00881 Nitroreductase family 8 165 3.8E-19 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_03475 c1301fb5a7451679256a365ed2e170ef 249 SUPERFAMILY SSF55469 1 248 3.01E-69 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_03475 c1301fb5a7451679256a365ed2e170ef 249 Gene3D G3DSA:3.40.109.10 1 249 1.3E-75 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_20905 c2fd358126fa1d40a18c6e614900872b 216 Pfam PF08348 YheO-like PAS domain 8 120 4.9E-38 T 13-10-2018 IPR013559 YheO-like RA13_20905 c2fd358126fa1d40a18c6e614900872b 216 Pfam PF13309 HTH domain 150 209 1.7E-21 T 13-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain RA13_20905 c2fd358126fa1d40a18c6e614900872b 216 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 6 111 2.0E-41 T 13-10-2018 IPR013559 YheO-like RA13_01410 3e794c342501e4670285ecfcff0bd912 211 TIGRFAM TIGR02893 spore_yabQ: spore cortex biosynthesis protein YabQ 2 129 1.0E-45 T 13-10-2018 IPR014242 Spore cortex biosynthesis protein, YabQ RA13_01410 3e794c342501e4670285ecfcff0bd912 211 Pfam PF09578 Spore cortex protein YabQ (Spore_YabQ) 11 87 5.2E-21 T 13-10-2018 IPR019074 Spore cortex biosynthesis protein, YabQ-like RA13_19425 88a7c844dcd33764f252c472d818c723 290 SUPERFAMILY SSF51735 1 160 4.93E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19425 88a7c844dcd33764f252c472d818c723 290 SUPERFAMILY SSF48179 165 283 1.12E-26 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_19425 88a7c844dcd33764f252c472d818c723 290 Gene3D G3DSA:3.40.50.720 1 159 1.2E-46 T 13-10-2018 RA13_19425 88a7c844dcd33764f252c472d818c723 290 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 157 6.5E-38 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RA13_19425 88a7c844dcd33764f252c472d818c723 290 Gene3D G3DSA:1.10.1040.10 160 287 1.9E-35 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_19425 88a7c844dcd33764f252c472d818c723 290 PIRSF PIRSF000103 1 290 4.9E-86 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RA13_19425 88a7c844dcd33764f252c472d818c723 290 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 281 5.3E-19 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 313 324 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 18 455 1.2E-223 T 13-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 Hamap MF_02103 Lactate utilization protein B [lutB]. 1 475 68.505 T 13-10-2018 IPR022825 Lactate utilization protein B RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 SUPERFAMILY SSF100950 64 296 1.88E-38 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 Pfam PF02589 LUD domain 70 295 8.4E-55 T 13-10-2018 IPR003741 LUD domain RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 SUPERFAMILY SSF46548 275 392 1.38E-15 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 Pfam PF11870 Domain of unknown function (DUF3390) 385 471 1.2E-19 T 13-10-2018 IPR024569 4Fe-4S binding protein, C-terminal RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 Pfam PF13183 4Fe-4S dicluster domain 311 377 1.3E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RA13_05400 2121724a3f5ae535b8b59c27301c3323 481 Gene3D G3DSA:3.40.50.10420 122 295 8.0E-15 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RA13_16705 94165456e08ee87558925842f73f7ed0 300 PIRSF PIRSF036480 17 300 4.5E-114 T 13-10-2018 RA13_16705 94165456e08ee87558925842f73f7ed0 300 Pfam PF01842 ACT domain 22 83 3.7E-11 T 13-10-2018 IPR002912 ACT domain RA13_16705 94165456e08ee87558925842f73f7ed0 300 Pfam PF00551 Formyl transferase 104 281 1.2E-42 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_16705 94165456e08ee87558925842f73f7ed0 300 Gene3D G3DSA:3.30.70.260 18 102 3.4E-28 T 13-10-2018 RA13_16705 94165456e08ee87558925842f73f7ed0 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 55 67 2.5E-64 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_16705 94165456e08ee87558925842f73f7ed0 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 105 127 2.5E-64 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_16705 94165456e08ee87558925842f73f7ed0 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 251 273 2.5E-64 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_16705 94165456e08ee87558925842f73f7ed0 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 273 298 2.5E-64 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_16705 94165456e08ee87558925842f73f7ed0 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 127 154 2.5E-64 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_16705 94165456e08ee87558925842f73f7ed0 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 22 48 2.5E-64 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_16705 94165456e08ee87558925842f73f7ed0 300 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 21 299 3.0E-137 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_16705 94165456e08ee87558925842f73f7ed0 300 SUPERFAMILY SSF53328 104 300 1.31E-62 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_16705 94165456e08ee87558925842f73f7ed0 300 SUPERFAMILY SSF55021 21 101 1.87E-19 T 13-10-2018 RA13_16705 94165456e08ee87558925842f73f7ed0 300 Gene3D G3DSA:3.40.50.170 103 300 3.4E-72 T 13-10-2018 RA13_16705 94165456e08ee87558925842f73f7ed0 300 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 17 299 47.829 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 131 145 - T 13-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 4 215 1.1E-97 T 13-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 Gene3D G3DSA:3.40.630.20 1 215 1.9E-88 T 13-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 70 86 - T 13-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 PIRSF PIRSF015592 2 213 1.9E-86 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 Pfam PF01470 Pyroglutamyl peptidase 4 202 7.4E-90 T 13-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 3 199 42.224 T 13-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 163 175 6.0E-52 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 5 28 6.0E-52 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 81 101 6.0E-52 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 63 75 6.0E-52 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 133 149 6.0E-52 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 RA13_00180 a622d235e54d8e472333ae2f72aaa510 215 SUPERFAMILY SSF53182 3 214 2.35E-73 T 13-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 RA13_14775 cee1877f9bd4b9cf42e28559dd0b9d84 245 Gene3D G3DSA:3.90.226.10 44 222 1.3E-31 T 13-10-2018 RA13_14775 cee1877f9bd4b9cf42e28559dd0b9d84 245 Pfam PF00574 Clp protease 44 220 1.5E-34 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RA13_14775 cee1877f9bd4b9cf42e28559dd0b9d84 245 SUPERFAMILY SSF52096 29 228 1.66E-39 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_20240 1979645cc7079e8ecc0274b07bac51ab 290 SUPERFAMILY SSF160240 211 287 1.7E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RA13_20240 1979645cc7079e8ecc0274b07bac51ab 290 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 287 5.1E-77 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RA13_20240 1979645cc7079e8ecc0274b07bac51ab 290 Gene3D G3DSA:1.20.1510.10 11 207 6.2E-55 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RA13_20240 1979645cc7079e8ecc0274b07bac51ab 290 Pfam PF01545 Cation efflux family 15 206 2.2E-50 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RA13_20240 1979645cc7079e8ecc0274b07bac51ab 290 Gene3D G3DSA:3.30.70.1350 208 289 1.5E-14 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RA13_20240 1979645cc7079e8ecc0274b07bac51ab 290 SUPERFAMILY SSF161111 8 208 1.31E-54 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RA13_20240 1979645cc7079e8ecc0274b07bac51ab 290 Pfam PF16916 Dimerisation domain of Zinc Transporter 214 286 4.7E-16 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 Gene3D G3DSA:3.50.50.100 1 354 1.7E-78 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.8E-6 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 1.8E-6 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 273 1.8E-6 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 225 239 1.8E-6 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 6.0E-7 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 6.0E-7 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 96 114 6.0E-7 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 224 240 6.0E-7 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 273 6.0E-7 T 13-10-2018 RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 SUPERFAMILY SSF51905 1 304 5.12E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06395 242dd7dc58af7824c14b5e49df5ce4af 355 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 287 8.8E-40 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 SMART SM00861 595 791 1.5E-45 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 Pfam PF00676 Dehydrogenase E1 component 220 532 1.4E-95 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 Gene3D G3DSA:3.40.50.970 153 536 4.1E-136 T 13-10-2018 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 SUPERFAMILY SSF52518 577 798 3.92E-43 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 Gene3D G3DSA:3.40.50.12470 554 813 6.8E-153 T 13-10-2018 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 SUPERFAMILY SSF52518 152 572 1.1E-71 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 16 939 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 796 939 2.1E-38 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 PIRSF PIRSF000157 1 942 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 Hamap MF_01169 2-oxoglutarate dehydrogenase E1 component [odhA]. 2 942 23.705 T 13-10-2018 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 Pfam PF02779 Transketolase, pyrimidine binding domain 594 791 9.8E-58 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_12210 f6e1f77f99ecc499b2f368ef4178a64b 944 Gene3D G3DSA:3.40.50.11610 731 938 6.8E-153 T 13-10-2018 RA13_11835 6d916d6cd091dd903d2652166c29334b 200 Gene3D G3DSA:3.40.50.1820 1 198 4.3E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_11835 6d916d6cd091dd903d2652166c29334b 200 SUPERFAMILY SSF53474 3 197 2.59E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_11835 6d916d6cd091dd903d2652166c29334b 200 Pfam PF01738 Dienelactone hydrolase family 65 189 4.9E-9 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 Gene3D G3DSA:2.160.10.10 253 439 6.0E-52 T 13-10-2018 RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 3 452 41.497 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 Pfam PF00483 Nucleotidyl transferase 6 215 6.8E-23 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 SUPERFAMILY SSF51161 249 445 2.87E-49 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 317 351 7.0E-9 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 1.5E-9 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 428 1.5E-6 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 454 7.7E-190 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 Gene3D G3DSA:3.90.550.10 1 252 5.7E-78 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 SUPERFAMILY SSF53448 4 306 3.6E-64 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_01465 fcf547150fffdaabb74993ae723c7baa 458 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RA13_01460 3de2e938aded02ca86408eec760f5346 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 10 126 2.4E-52 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RA13_01460 3de2e938aded02ca86408eec760f5346 317 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 134 149 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RA13_01460 3de2e938aded02ca86408eec760f5346 317 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 10 317 51.292 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RA13_01460 3de2e938aded02ca86408eec760f5346 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 11 317 7.1E-131 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RA13_01460 3de2e938aded02ca86408eec760f5346 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 209 316 2.4E-25 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RA13_01460 3de2e938aded02ca86408eec760f5346 317 Gene3D G3DSA:3.40.50.2020 16 307 6.3E-128 T 13-10-2018 RA13_01460 3de2e938aded02ca86408eec760f5346 317 SMART SM01400 10 126 2.9E-82 T 13-10-2018 RA13_01460 3de2e938aded02ca86408eec760f5346 317 Gene3D G3DSA:3.40.50.2020 153 293 6.3E-128 T 13-10-2018 RA13_01460 3de2e938aded02ca86408eec760f5346 317 SUPERFAMILY SSF53271 75 308 5.93E-68 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_17915 5a4daf4f97d017123c0c7d97165192fe 189 ProDom PD106196 YISN IG BH1722 2 178 9.0E-65 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 RA13_17915 5a4daf4f97d017123c0c7d97165192fe 189 Pfam PF10949 Protein of unknown function (DUF2777) 2 180 1.2E-59 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 SUPERFAMILY SSF52374 6 575 9.01E-148 T 13-10-2018 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Gene3D G3DSA:3.90.740.10 181 347 0.0 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 SUPERFAMILY SSF50677 197 347 1.96E-64 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 SUPERFAMILY SSF47323 577 829 3.55E-76 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 879 16.279 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 PRINTS PR00986 Valyl-tRNA synthetase signature 477 495 4.3E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 PRINTS PR00986 Valyl-tRNA synthetase signature 351 364 4.3E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 4.3E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 4.3E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 PRINTS PR00986 Valyl-tRNA synthetase signature 445 466 4.3E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 SUPERFAMILY SSF46589 814 878 5.75E-17 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Pfam PF08264 Anticodon-binding domain of tRNA 608 756 3.9E-44 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 TIGRFAM TIGR00422 valS: valine--tRNA ligase 8 861 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Gene3D G3DSA:3.40.50.620 28 526 0.0 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Gene3D G3DSA:1.10.287.380 807 879 5.1E-24 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Gene3D G3DSA:1.10.730.10 8 741 0.0 T 13-10-2018 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 814 879 4.3E-23 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RA13_08690 75a7761c26865fceca0d74001704e0f4 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 21 565 3.4E-230 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_07250 dec067dc043e03c49874678e4f47a288 155 Pfam PF03073 TspO/MBR family 11 151 8.6E-28 T 13-10-2018 IPR004307 TspO/MBR-related protein GO:0016021 RA13_07250 dec067dc043e03c49874678e4f47a288 155 Gene3D G3DSA:1.20.1260.100 1 155 2.6E-29 T 13-10-2018 IPR038330 TspO/MBR-related superfamily RA13_07250 dec067dc043e03c49874678e4f47a288 155 PIRSF PIRSF005859 1 155 3.1E-38 T 13-10-2018 IPR004307 TspO/MBR-related protein GO:0016021 RA13_12020 0ed28cd079387ad15703720ca6789fbc 569 Pfam PF03354 Phage Terminase 85 550 4.1E-88 T 13-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type RA13_12020 0ed28cd079387ad15703720ca6789fbc 569 Gene3D G3DSA:3.40.50.300 47 259 2.5E-16 T 13-10-2018 RA13_19835 b5f8e1f22081deeb9707f52e24741408 507 SUPERFAMILY SSF53850 25 504 8.69E-94 T 13-10-2018 RA13_19835 b5f8e1f22081deeb9707f52e24741408 507 Gene3D G3DSA:3.40.190.10 156 502 1.0E-70 T 13-10-2018 RA13_19835 b5f8e1f22081deeb9707f52e24741408 507 Pfam PF01547 Bacterial extracellular solute-binding protein 65 366 1.3E-31 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RA13_19835 b5f8e1f22081deeb9707f52e24741408 507 Gene3D G3DSA:3.40.190.10 70 419 1.0E-70 T 13-10-2018 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 Gene3D G3DSA:1.10.8.870 421 552 1.0E-44 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 51 63 1.5E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 35 45 1.5E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 368 380 1.5E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 34 1.5E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 96 108 1.5E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 338 344 1.5E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 Pfam PF01266 FAD dependent oxidoreductase 23 352 1.5E-52 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 Gene3D G3DSA:3.50.50.60 20 381 4.7E-138 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 27 44 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 373 383 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 Gene3D G3DSA:3.30.9.10 104 345 4.7E-138 T 13-10-2018 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 405 533 1.4E-25 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 SUPERFAMILY SSF51905 1 239 5.8E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18700 8bab30e1622ab3627dabba4ae43510e3 554 SUPERFAMILY SSF54373 251 344 6.02E-12 T 13-10-2018 RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 SUPERFAMILY SSF53335 4 280 2.37E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 25 280 4.4E-84 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 Gene3D G3DSA:3.40.50.150 85 286 5.1E-63 T 13-10-2018 RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 284 43.873 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 Gene3D G3DSA:1.10.8.10 3 84 3.1E-17 T 13-10-2018 RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 Pfam PF05175 Methyltransferase small domain 117 222 3.2E-16 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 187 193 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RA13_03960 65c79a7674caac3c22c84bb10dd2b4aa 288 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 3 286 7.7E-90 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RA13_06275 81132b7d58bb67e96c924a6051183aa1 531 Pfam PF07905 Purine catabolism regulatory protein-like family 5 124 4.5E-35 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain RA13_06275 81132b7d58bb67e96c924a6051183aa1 531 Pfam PF13556 PucR C-terminal helix-turn-helix domain 468 526 2.0E-23 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RA13_06275 81132b7d58bb67e96c924a6051183aa1 531 Gene3D G3DSA:1.10.10.2840 402 530 1.6E-23 T 13-10-2018 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 Pfam PF00989 PAS fold 14 63 5.0E-8 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 173 186 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 SMART SM00382 169 313 2.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 Gene3D G3DSA:1.10.8.60 322 394 9.9E-20 T 13-10-2018 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 Gene3D G3DSA:1.10.10.60 395 465 3.1E-13 T 13-10-2018 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 Pfam PF02954 Bacterial regulatory protein, Fis family 422 462 6.0E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 428 445 4.8E-5 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 445 465 4.8E-5 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 363 372 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 SUPERFAMILY SSF46689 363 464 3.67E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 SUPERFAMILY SSF55785 11 87 1.47E-10 T 13-10-2018 IPR035965 PAS domain superfamily RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 Gene3D G3DSA:3.40.50.300 133 321 1.2E-65 T 13-10-2018 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 SMART SM00091 11 77 2.6E-7 T 13-10-2018 IPR000014 PAS domain RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 Gene3D G3DSA:3.30.450.20 13 114 4.4E-17 T 13-10-2018 RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 66 1.8E-6 T 13-10-2018 IPR000014 PAS domain RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 SUPERFAMILY SSF52540 148 391 8.44E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03035 051466af4ffaa1b658c72ce4ae82bf63 465 Pfam PF00158 Sigma-54 interaction domain 149 317 2.3E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 97 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 77 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 131 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 45 61 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 SMART SM00347 21 121 4.5E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 Pfam PF01047 MarR family 28 85 4.3E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 Gene3D G3DSA:1.10.10.10 2 145 1.5E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 ProSitePatterns PS01117 MarR-type HTH domain signature. 60 94 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RA13_20775 754b07edd5aaec8dff715c4dc9b48675 150 SUPERFAMILY SSF46785 4 140 6.64E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20215 7b793ab43f0c20b9655341eb28222d88 177 SUPERFAMILY SSF88946 3 93 9.42E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_20215 7b793ab43f0c20b9655341eb28222d88 177 Pfam PF04542 Sigma-70 region 2 23 82 1.2E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_20215 7b793ab43f0c20b9655341eb28222d88 177 Gene3D G3DSA:1.10.1740.10 1 110 1.9E-22 T 13-10-2018 RA13_20215 7b793ab43f0c20b9655341eb28222d88 177 Gene3D G3DSA:1.10.10.10 111 167 1.6E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20215 7b793ab43f0c20b9655341eb28222d88 177 SUPERFAMILY SSF88659 109 167 1.08E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_20215 7b793ab43f0c20b9655341eb28222d88 177 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 165 6.3E-26 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_20215 7b793ab43f0c20b9655341eb28222d88 177 Pfam PF08281 Sigma-70, region 4 110 161 7.7E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.2E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.2E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.2E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 Gene3D G3DSA:4.10.520.10 1 92 2.1E-41 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 SMART SM00411 1 90 7.2E-54 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 Pfam PF00216 Bacterial DNA-binding protein 1 89 1.3E-38 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 SUPERFAMILY SSF47729 1 90 1.62E-36 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RA13_11030 b6acc7c928a58dea98a1223257dc0366 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RA13_17005 8e379241728d87b8732bb1b82d08325b 432 TIGRFAM TIGR01547 phage_term_2: phage terminase, large subunit, PBSX family 20 418 7.0E-93 T 13-10-2018 IPR006437 Bacteriophage terminase, large subunit GO:0006323 RA13_17005 8e379241728d87b8732bb1b82d08325b 432 Gene3D G3DSA:3.30.420.280 246 415 8.5E-37 T 13-10-2018 RA13_17005 8e379241728d87b8732bb1b82d08325b 432 Gene3D G3DSA:3.40.50.300 5 232 2.3E-56 T 13-10-2018 RA13_17005 8e379241728d87b8732bb1b82d08325b 432 Pfam PF04466 Phage terminase large subunit 19 231 3.0E-81 T 13-10-2018 IPR035412 Phage terminase large subunit, N-terminal RA13_17005 8e379241728d87b8732bb1b82d08325b 432 Pfam PF17288 Terminase RNAseH like domain 268 410 4.1E-48 T 13-10-2018 IPR035413 Phage terminase large subunit, C-terminal RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 5 371 2.4E-170 T 13-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 ProSitePatterns PS00480 Citrate synthase signature. 254 266 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 PIRSF PIRSF001369 1 372 4.2E-160 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 PRINTS PR00143 Citrate synthase signature 324 338 2.5E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 PRINTS PR00143 Citrate synthase signature 172 187 2.5E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 PRINTS PR00143 Citrate synthase signature 304 320 2.5E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 PRINTS PR00143 Citrate synthase signature 123 136 2.5E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 PRINTS PR00143 Citrate synthase signature 194 222 2.5E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 PRINTS PR00143 Citrate synthase signature 247 267 2.5E-43 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 Pfam PF00285 Citrate synthase, C-terminal domain 6 354 1.3E-127 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 Gene3D G3DSA:1.10.230.10 220 318 6.9E-127 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 SUPERFAMILY SSF48256 2 371 1.83E-134 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RA13_08125 b645fe958c2cce0e0d0b58f56c1dcf04 372 Gene3D G3DSA:1.10.580.10 25 351 6.9E-127 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RA13_20515 9eb3ea9f6ea0d6eee19b7ab0a8337ebf 409 Pfam PF07690 Major Facilitator Superfamily 43 363 2.7E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_20515 9eb3ea9f6ea0d6eee19b7ab0a8337ebf 409 Gene3D G3DSA:1.20.1250.20 6 406 8.5E-43 T 13-10-2018 RA13_20515 9eb3ea9f6ea0d6eee19b7ab0a8337ebf 409 SUPERFAMILY SSF103473 16 398 1.83E-50 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 SUPERFAMILY SSF48452 403 508 4.56E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 SMART SM00028 462 495 6.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 SMART SM00028 428 461 1.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 Pfam PF01694 Rhomboid family 222 356 8.8E-39 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 Pfam PF14559 Tetratricopeptide repeat 442 505 1.8E-9 T 13-10-2018 RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 Gene3D G3DSA:1.20.1540.10 175 365 6.1E-49 T 13-10-2018 IPR035952 Rhomboid-like superfamily RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 SUPERFAMILY SSF144091 179 357 5.1E-44 T 13-10-2018 RA13_09885 e47c989228050c1c9501b4d32603d4ef 509 Gene3D G3DSA:1.25.40.10 389 509 2.0E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_01010 cb5cc3a5fc0650741768f0402dc689c4 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 19.203 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01010 cb5cc3a5fc0650741768f0402dc689c4 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 5.7E-25 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01010 cb5cc3a5fc0650741768f0402dc689c4 66 Pfam PF00831 Ribosomal L29 protein 4 60 1.3E-26 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01010 cb5cc3a5fc0650741768f0402dc689c4 66 Gene3D G3DSA:1.10.287.310 1 66 3.9E-31 T 13-10-2018 RA13_01010 cb5cc3a5fc0650741768f0402dc689c4 66 SUPERFAMILY SSF46561 1 63 4.84E-24 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01010 cb5cc3a5fc0650741768f0402dc689c4 66 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 13-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_02235 6ab5f650ffab552d51eb3dc43f78793c 156 SUPERFAMILY SSF55729 1 150 1.51E-25 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_02235 6ab5f650ffab552d51eb3dc43f78793c 156 Pfam PF00583 Acetyltransferase (GNAT) family 55 145 8.3E-14 T 13-10-2018 IPR000182 GNAT domain RA13_02235 6ab5f650ffab552d51eb3dc43f78793c 156 Gene3D G3DSA:3.40.630.30 2 156 2.2E-43 T 13-10-2018 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 325 1.0E-65 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 15 177 1.4E-76 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 Gene3D G3DSA:1.10.3730.40 182 337 5.2E-70 T 13-10-2018 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 Gene3D G3DSA:3.40.50.720 1 181 3.1E-78 T 13-10-2018 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 PIRSF PIRSF000116 3 206 2.3E-41 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 PIRSF PIRSF000116 201 332 1.9E-17 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 SUPERFAMILY SSF51735 3 182 8.42E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 SUPERFAMILY SSF48179 183 332 8.84E-71 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 2 328 44.818 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RA13_08585 1ab9c2591f08acf36fac9a57344f7fb2 342 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 327 4.4E-151 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 SMART SM00382 51 360 1.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 3 467 44.235 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 6 467 2.0E-226 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 Gene3D G3DSA:1.10.8.60 359 464 1.5E-40 T 13-10-2018 RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 SMART SM01086 359 453 1.6E-25 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 SUPERFAMILY SSF52540 6 465 9.62E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 Pfam PF07724 AAA domain (Cdc48 subfamily) 212 353 3.0E-42 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 55 134 3.4E-7 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_15105 4e4c721e0021c174fdf62d28bad1bc19 467 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 359 429 1.2E-7 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_14720 9af5488c0b37444fd57eee8b565da362 305 Pfam PF13413 Helix-turn-helix domain 7 67 3.8E-22 T 13-10-2018 RA13_14720 9af5488c0b37444fd57eee8b565da362 305 SUPERFAMILY SSF47413 3 75 4.74E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_14720 9af5488c0b37444fd57eee8b565da362 305 Gene3D G3DSA:1.10.260.40 1 102 8.1E-30 T 13-10-2018 RA13_14720 9af5488c0b37444fd57eee8b565da362 305 Pfam PF13464 Domain of unknown function (DUF4115) 220 280 9.8E-11 T 13-10-2018 IPR025194 Domain of unknown function DUF4115 RA13_14720 9af5488c0b37444fd57eee8b565da362 305 SMART SM00530 7 68 0.0031 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 Gene3D G3DSA:3.10.50.40 151 248 1.9E-94 T 13-10-2018 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 Gene3D G3DSA:3.30.70.1050 3 114 6.9E-32 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 239 7.4E-15 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 SUPERFAMILY SSF54534 89 243 1.96E-37 T 13-10-2018 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 Gene3D G3DSA:1.10.3120.10 115 423 1.9E-94 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 Hamap MF_00303 Trigger factor [tig]. 1 424 23.505 T 13-10-2018 IPR005215 Trigger factor GO:0015031 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 TIGRFAM TIGR00115 tig: trigger factor 12 421 1.2E-141 T 13-10-2018 IPR005215 Trigger factor GO:0015031 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 2.6E-45 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 264 422 2.4E-46 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 PIRSF PIRSF003095 1 424 1.4E-136 T 13-10-2018 IPR005215 Trigger factor GO:0015031 RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 SUPERFAMILY SSF109998 250 423 6.41E-42 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily RA13_08615 453c7f8e9c90a8693b26d648d368947d 424 SUPERFAMILY SSF102735 1 130 2.88E-39 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 Pfam PF13426 PAS domain 22 121 2.4E-8 T 13-10-2018 IPR000014 PAS domain RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 438 458 2.0E-6 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 421 438 2.0E-6 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 125 9.8E-9 T 13-10-2018 IPR000014 PAS domain RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 Pfam PF00158 Sigma-54 interaction domain 143 308 1.1E-61 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 Gene3D G3DSA:1.10.10.60 407 460 8.4E-14 T 13-10-2018 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 SUPERFAMILY SSF55785 12 114 2.47E-9 T 13-10-2018 IPR035965 PAS domain superfamily RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 167 180 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 Gene3D G3DSA:1.10.8.60 313 380 4.9E-22 T 13-10-2018 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 SUPERFAMILY SSF52540 143 385 4.4E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 Gene3D G3DSA:3.30.450.20 10 120 2.6E-12 T 13-10-2018 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 SMART SM00382 163 305 4.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 Gene3D G3DSA:3.40.50.300 128 312 2.4E-60 T 13-10-2018 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 SUPERFAMILY SSF46689 355 457 1.93E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_02205 ddf2922e4cce4cddfa116cf510d6bcbe 461 Pfam PF02954 Bacterial regulatory protein, Fis family 415 455 3.1E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_17215 fed9431616deeff95bacdc5c78c944af 193 Pfam PF14172 Domain of unknown function (DUF4309) 53 190 1.6E-27 T 13-10-2018 IPR025453 Protein of unknown function DUF4309 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Gene3D G3DSA:3.30.450.20 149 273 6.2E-15 T 13-10-2018 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 32 147 7.4E-6 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 272 389 1.5E-9 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 390 509 4.9E-12 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 151 266 1.4E-8 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Gene3D G3DSA:3.30.450.20 380 500 3.8E-15 T 13-10-2018 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SUPERFAMILY SSF55785 259 371 1.2E-15 T 13-10-2018 IPR035965 PAS domain superfamily RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SUPERFAMILY SSF47384 512 579 6.87E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SMART SM00387 623 730 3.4E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SUPERFAMILY SSF55874 575 732 7.99E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SMART SM00388 517 581 1.6E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Gene3D G3DSA:1.10.287.130 502 580 8.1E-16 T 13-10-2018 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Pfam PF13188 PAS domain 395 442 4.8E-5 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Pfam PF13426 PAS domain 164 261 9.9E-4 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Gene3D G3DSA:3.30.450.20 274 379 5.2E-15 T 13-10-2018 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 675 1.7E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 PRINTS PR00344 Bacterial sensor protein C-terminal signature 690 708 1.7E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 PRINTS PR00344 Bacterial sensor protein C-terminal signature 714 727 1.7E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 689 1.7E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Gene3D G3DSA:3.30.450.20 18 148 2.0E-14 T 13-10-2018 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SUPERFAMILY SSF55785 138 260 2.97E-14 T 13-10-2018 IPR035965 PAS domain superfamily RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 625 729 3.3E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Pfam PF00989 PAS fold 35 138 1.0E-6 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Pfam PF00989 PAS fold 274 336 5.0E-8 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SMART SM00091 153 219 8.7E-4 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SMART SM00091 394 460 2.3E-5 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SMART SM00091 274 341 7.6E-7 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SMART SM00091 32 98 3.4E-6 T 13-10-2018 IPR000014 PAS domain RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Gene3D G3DSA:3.30.565.10 583 738 1.0E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 Pfam PF00512 His Kinase A (phospho-acceptor) domain 519 579 2.7E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SUPERFAMILY SSF55785 19 139 2.27E-13 T 13-10-2018 IPR035965 PAS domain superfamily RA13_16435 22e61c9ec5a56fba392b11c90a5b166e 739 SUPERFAMILY SSF55785 379 459 5.31E-15 T 13-10-2018 IPR035965 PAS domain superfamily RA13_18160 6163fead34289e85447d1dc8071a075d 382 Gene3D G3DSA:3.30.70.80 30 109 8.8E-26 T 13-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 RA13_18160 6163fead34289e85447d1dc8071a075d 382 PRINTS PR00723 Subtilisin serine protease family (S8) signature 130 149 7.3E-24 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_18160 6163fead34289e85447d1dc8071a075d 382 PRINTS PR00723 Subtilisin serine protease family (S8) signature 167 180 7.3E-24 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_18160 6163fead34289e85447d1dc8071a075d 382 PRINTS PR00723 Subtilisin serine protease family (S8) signature 325 341 7.3E-24 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_18160 6163fead34289e85447d1dc8071a075d 382 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 326 336 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RA13_18160 6163fead34289e85447d1dc8071a075d 382 SUPERFAMILY SSF52743 108 381 4.45E-96 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_18160 6163fead34289e85447d1dc8071a075d 382 Gene3D G3DSA:3.40.50.200 110 382 5.4E-116 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_18160 6163fead34289e85447d1dc8071a075d 382 SUPERFAMILY SSF54897 37 106 1.76E-22 T 13-10-2018 RA13_18160 6163fead34289e85447d1dc8071a075d 382 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 135 146 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RA13_18160 6163fead34289e85447d1dc8071a075d 382 Pfam PF00082 Subtilase family 130 373 9.0E-63 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RA13_18160 6163fead34289e85447d1dc8071a075d 382 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 171 181 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 176 5.6E-69 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 2.3E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 2.3E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 2.3E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 Gene3D G3DSA:2.30.30.30 119 177 6.7E-24 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 SUPERFAMILY SSF82679 2 114 1.09E-40 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 Gene3D G3DSA:3.30.70.940 1 118 6.3E-45 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 Pfam PF00467 KOW motif 128 158 3.8E-8 T 13-10-2018 IPR005824 KOW RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 Pfam PF02357 Transcription termination factor nusG 3 109 7.2E-28 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 SMART SM00739 123 150 4.6E-6 T 13-10-2018 IPR005824 KOW RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 SUPERFAMILY SSF50104 121 177 3.46E-19 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 SMART SM00738 2 113 3.0E-53 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RA13_01125 b8dc0e8761ca59fc4ead50f2b79099ff 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 29.976 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RA13_09740 6fc483f22bea1cb75e1d272e13d097c3 373 SUPERFAMILY SSF102705 6 372 5.1E-133 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily RA13_09740 6fc483f22bea1cb75e1d272e13d097c3 373 Gene3D G3DSA:3.40.1390.30 4 128 1.6E-40 T 13-10-2018 RA13_09740 6fc483f22bea1cb75e1d272e13d097c3 373 PIRSF PIRSF037489 3 373 9.7E-159 T 13-10-2018 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria RA13_09740 6fc483f22bea1cb75e1d272e13d097c3 373 Gene3D G3DSA:3.30.70.120 133 241 3.2E-43 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_09740 6fc483f22bea1cb75e1d272e13d097c3 373 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 9 350 4.6E-80 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RA13_09740 6fc483f22bea1cb75e1d272e13d097c3 373 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 369 8.3E-112 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 Gene3D G3DSA:1.10.287.950 353 659 7.8E-73 T 13-10-2018 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 Gene3D G3DSA:1.10.8.500 302 352 1.4E-11 T 13-10-2018 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 SUPERFAMILY SSF58104 323 659 2.09E-72 T 13-10-2018 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 SUPERFAMILY SSF103190 69 190 7.85E-12 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 429 612 2.7E-55 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 Gene3D G3DSA:3.30.450.20 72 183 8.1E-32 T 13-10-2018 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 SMART SM00283 384 659 4.4E-97 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 Gene3D G3DSA:3.30.450.20 63 268 8.1E-32 T 13-10-2018 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 Pfam PF02743 Cache domain 45 263 1.1E-25 T 13-10-2018 IPR033479 Double Cache domain 1 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 SMART SM00319 33 151 3.7E-11 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 511 540 1.3E-25 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 1.3E-25 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 482 509 1.3E-25 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 SMART SM00304 303 355 6.8E-16 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_06885 921d87bab6aa5e003cd84582da3f5658 661 Pfam PF00672 HAMP domain 303 351 5.2E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 Pfam PF00501 AMP-binding enzyme 8 403 9.7E-87 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 Hamap MF_00593 D-alanine--D-alanyl carrier protein ligase [dltA]. 1 503 239.424 T 13-10-2018 IPR010072 D-alanine--D-alanyl carrier protein ligase GO:0005524|GO:0047473|GO:0070395 RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 SUPERFAMILY SSF56801 3 500 9.68E-122 T 13-10-2018 RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 28 428 1.5E-100 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 148 159 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 TIGRFAM TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1 2 501 1.7E-231 T 13-10-2018 IPR010072 D-alanine--D-alanyl carrier protein ligase GO:0005524|GO:0047473|GO:0070395 RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 Gene3D G3DSA:3.40.50.12780 1 397 2.2E-138 T 13-10-2018 RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 412 491 1.9E-6 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_03235 02fa8ef5c6dba2011d9b6034634a6260 503 Gene3D G3DSA:3.30.300.30 398 502 6.3E-30 T 13-10-2018 RA13_08860 96b4b9cde5115720904662a0f282d110 596 SUPERFAMILY SSF54556 332 402 2.68E-21 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RA13_08860 96b4b9cde5115720904662a0f282d110 596 SMART SM00636 39 431 2.9E-158 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RA13_08860 96b4b9cde5115720904662a0f282d110 596 Gene3D G3DSA:2.60.40.10 452 545 7.1E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_08860 96b4b9cde5115720904662a0f282d110 596 ProSitePatterns PS01095 Chitinases family 18 active site. 190 198 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RA13_08860 96b4b9cde5115720904662a0f282d110 596 Pfam PF00704 Glycosyl hydrolases family 18 40 431 1.4E-100 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RA13_08860 96b4b9cde5115720904662a0f282d110 596 SMART SM00495 547 592 3.5E-17 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RA13_08860 96b4b9cde5115720904662a0f282d110 596 Gene3D G3DSA:3.20.20.80 41 431 6.6E-166 T 13-10-2018 RA13_08860 96b4b9cde5115720904662a0f282d110 596 SUPERFAMILY SSF49265 453 531 3.33E-16 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RA13_08860 96b4b9cde5115720904662a0f282d110 596 Pfam PF02839 Carbohydrate binding domain 564 589 1.5E-6 T 13-10-2018 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RA13_08860 96b4b9cde5115720904662a0f282d110 596 SUPERFAMILY SSF51445 34 435 9.84E-105 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_08860 96b4b9cde5115720904662a0f282d110 596 Pfam PF00041 Fibronectin type III domain 458 528 1.6E-9 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RA13_08860 96b4b9cde5115720904662a0f282d110 596 Gene3D G3DSA:2.10.10.20 546 595 9.4E-17 T 13-10-2018 RA13_08860 96b4b9cde5115720904662a0f282d110 596 Gene3D G3DSA:3.10.50.10 331 402 6.6E-166 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RA13_08860 96b4b9cde5115720904662a0f282d110 596 PRINTS PR00014 Fibronectin type III repeat signature 498 516 3.8E-5 T 13-10-2018 RA13_08860 96b4b9cde5115720904662a0f282d110 596 PRINTS PR00014 Fibronectin type III repeat signature 483 493 3.8E-5 T 13-10-2018 RA13_08860 96b4b9cde5115720904662a0f282d110 596 PRINTS PR00014 Fibronectin type III repeat signature 471 480 3.8E-5 T 13-10-2018 RA13_08860 96b4b9cde5115720904662a0f282d110 596 PRINTS PR00014 Fibronectin type III repeat signature 516 530 3.8E-5 T 13-10-2018 RA13_08860 96b4b9cde5115720904662a0f282d110 596 SMART SM00060 457 529 4.6E-13 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RA13_08860 96b4b9cde5115720904662a0f282d110 596 SUPERFAMILY SSF51055 541 595 1.15E-16 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 RA13_03835 9330370d7503debc428212c1f6fed6f0 230 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 1 223 6.6E-104 T 13-10-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 RA13_03835 9330370d7503debc428212c1f6fed6f0 230 Gene3D G3DSA:1.20.950.20 2 214 8.3E-77 T 13-10-2018 RA13_03835 9330370d7503debc428212c1f6fed6f0 230 Pfam PF02665 Nitrate reductase gamma subunit 4 222 3.7E-84 T 13-10-2018 IPR023234 NarG-like domain RA13_03835 9330370d7503debc428212c1f6fed6f0 230 SUPERFAMILY SSF103501 2 222 2.48E-68 T 13-10-2018 IPR036197 NarG-like superfamily RA13_21530 6a1df8487ba9d0013270329f6f184133 472 Gene3D G3DSA:1.10.287.130 243 313 3.7E-21 T 13-10-2018 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 421 2.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 407 2.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 466 2.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 2.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 SUPERFAMILY SSF158472 189 235 7.06E-10 T 13-10-2018 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 SMART SM00387 357 469 1.8E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_21530 6a1df8487ba9d0013270329f6f184133 472 SMART SM00388 246 312 3.8E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 SUPERFAMILY SSF55874 303 467 1.28E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_21530 6a1df8487ba9d0013270329f6f184133 472 Pfam PF00672 HAMP domain 189 234 3.4E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 SMART SM00304 186 238 3.2E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 468 2.9E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_21530 6a1df8487ba9d0013270329f6f184133 472 Gene3D G3DSA:1.20.1480.50 151 242 3.2E-14 T 13-10-2018 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 311 3.9E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_21530 6a1df8487ba9d0013270329f6f184133 472 Gene3D G3DSA:3.30.565.10 314 472 1.9E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_21530 6a1df8487ba9d0013270329f6f184133 472 SUPERFAMILY SSF47384 229 313 8.44E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_18390 e3075e52cbecc9886834d23ebe2081cb 165 Gene3D G3DSA:3.30.70.1450 85 158 1.4E-17 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_18390 e3075e52cbecc9886834d23ebe2081cb 165 Pfam PF02080 TrkA-C domain 89 159 7.4E-14 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RA13_18390 e3075e52cbecc9886834d23ebe2081cb 165 SUPERFAMILY SSF116726 79 159 1.09E-16 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_18390 e3075e52cbecc9886834d23ebe2081cb 165 PIRSF PIRSF005028 1 162 1.5E-57 T 13-10-2018 IPR026278 Potassium/proton antiporter subunit KhtT RA13_06415 bcb8c7a151f0e073c9d21b20afaabd09 120 Gene3D G3DSA:2.60.300.12 4 112 2.6E-37 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RA13_06415 bcb8c7a151f0e073c9d21b20afaabd09 120 SUPERFAMILY SSF89360 5 98 3.14E-30 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RA13_06415 bcb8c7a151f0e073c9d21b20afaabd09 120 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 5 109 3.8E-39 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 RA13_06415 bcb8c7a151f0e073c9d21b20afaabd09 120 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 91 108 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 RA13_06415 bcb8c7a151f0e073c9d21b20afaabd09 120 Pfam PF01521 Iron-sulphur cluster biosynthesis 5 105 9.4E-21 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 SUPERFAMILY SSF52540 303 751 1.7E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 486 730 1.9E-5 T 13-10-2018 RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 269 430 8.5E-8 T 13-10-2018 RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 Hamap MF_01452 ATP-dependent helicase/deoxyribonuclease subunit B [addB]. 2 1162 65.261 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 Pfam PF12705 PD-(D/E)XK nuclease superfamily 791 1131 7.8E-58 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 TIGRFAM TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit 2 1163 0.0 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 Gene3D G3DSA:3.40.50.300 112 278 8.6E-36 T 13-10-2018 RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 Gene3D G3DSA:3.40.50.300 498 700 1.3E-46 T 13-10-2018 RA13_18000 03b9e20c7381de0807300bd92ec4e3d0 1166 Gene3D G3DSA:3.40.50.300 279 432 1.5E-36 T 13-10-2018 RA13_15925 f3f4dd99f3b9d41dc30e3e77fa664f46 69 ProDom PD055417 UPF0356 TRANSCRIPTIONAL REGULATOR SP0122 SH1862 BLI01669/BL01628 MW0973 LMOF2365_1049 BCE33L3734 SPYM3_1619/SPS0248 1 68 9.0E-29 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 RA13_15925 f3f4dd99f3b9d41dc30e3e77fa664f46 69 Pfam PF07288 Protein of unknown function (DUF1447) 2 68 6.2E-30 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 RA13_15925 f3f4dd99f3b9d41dc30e3e77fa664f46 69 Hamap MF_01553 UPF0356 protein . 1 69 22.433 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 RA13_15925 f3f4dd99f3b9d41dc30e3e77fa664f46 69 Gene3D G3DSA:3.10.20.730 1 58 2.7E-27 T 13-10-2018 RA13_13640 5889a3a0be7ab1ca2f937ef613e4e52c 128 Pfam PF07972 NrdI Flavodoxin like 1 112 1.5E-31 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI RA13_13640 5889a3a0be7ab1ca2f937ef613e4e52c 128 SUPERFAMILY SSF52218 1 113 1.04E-19 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_13640 5889a3a0be7ab1ca2f937ef613e4e52c 128 Gene3D G3DSA:3.40.50.360 1 128 1.5E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_13640 5889a3a0be7ab1ca2f937ef613e4e52c 128 PIRSF PIRSF005087 1 126 1.2E-38 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI RA13_13640 5889a3a0be7ab1ca2f937ef613e4e52c 128 TIGRFAM TIGR00333 nrdI: nrdI protein 1 123 5.4E-49 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI RA13_15260 fab56da98df1fe6510d7d0a09b90fff1 557 Pfam PF02734 DAK2 domain 36 200 6.0E-43 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RA13_15260 fab56da98df1fe6510d7d0a09b90fff1 557 SUPERFAMILY SSF101473 4 201 2.49E-46 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RA13_15260 fab56da98df1fe6510d7d0a09b90fff1 557 Pfam PF13684 Dihydroxyacetone kinase family 239 557 5.4E-123 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain RA13_15260 fab56da98df1fe6510d7d0a09b90fff1 557 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 11 557 6.4E-216 T 13-10-2018 IPR019986 DAK2 domain-containing protein YloV RA13_15260 fab56da98df1fe6510d7d0a09b90fff1 557 SMART SM01121 239 557 3.1E-183 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain RA13_15260 fab56da98df1fe6510d7d0a09b90fff1 557 SMART SM01120 36 201 2.4E-73 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RA13_15260 fab56da98df1fe6510d7d0a09b90fff1 557 Gene3D G3DSA:1.25.40.340 34 179 3.2E-13 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 RA13_06125 51bcca71286f4b741b9355ad2cf73c06 328 Pfam PF01380 SIS domain 25 123 8.2E-13 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RA13_06125 51bcca71286f4b741b9355ad2cf73c06 328 SUPERFAMILY SSF53697 16 328 5.47E-58 T 13-10-2018 RA13_06125 51bcca71286f4b741b9355ad2cf73c06 328 Gene3D G3DSA:3.40.50.12570 193 286 1.1E-64 T 13-10-2018 RA13_06125 51bcca71286f4b741b9355ad2cf73c06 328 PIRSF PIRSF009290 2 328 4.5E-91 T 13-10-2018 IPR024713 Fructosamine deglycase FrlB RA13_06125 51bcca71286f4b741b9355ad2cf73c06 328 Gene3D G3DSA:3.40.50.10490 1 155 5.4E-45 T 13-10-2018 RA13_06125 51bcca71286f4b741b9355ad2cf73c06 328 Gene3D G3DSA:1.10.10.2240 158 310 1.1E-64 T 13-10-2018 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 500 523 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 577 594 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 364 387 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 419 443 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 391 412 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 PRINTS PR00702 Acriflavin resistance protein family signature 475 498 1.5E-46 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 Pfam PF00873 AcrB/AcrD/AcrF family 4 1041 2.0E-206 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 SUPERFAMILY SSF82693 134 345 1.46E-14 T 13-10-2018 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 SUPERFAMILY SSF82866 325 526 2.49E-44 T 13-10-2018 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 SUPERFAMILY SSF82714 186 248 2.49E-5 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 SUPERFAMILY SSF82714 738 821 1.31E-12 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 SUPERFAMILY SSF82693 41 133 2.79E-21 T 13-10-2018 RA13_20030 c4bcb9179a7ed12ba8f00c3b1b3efb80 1054 SUPERFAMILY SSF82866 823 1047 4.97E-45 T 13-10-2018 RA13_12715 dc0440eba10e46181e3367509acfbc87 48 Hamap MF_01505 Small, acid-soluble spore protein N [sspN]. 2 48 18.767 T 13-10-2018 IPR012612 Small acid-soluble spore protein, SspN GO:0030436|GO:0042601 RA13_12715 dc0440eba10e46181e3367509acfbc87 48 Pfam PF08177 Small acid-soluble spore protein N family 1 47 4.8E-24 T 13-10-2018 IPR012612 Small acid-soluble spore protein, SspN GO:0030436|GO:0042601 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 TIGRFAM TIGR00492 alr: alanine racemase 6 378 1.2E-150 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 Pfam PF01168 Alanine racemase, N-terminal domain 12 235 9.2E-66 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 Hamap MF_01201 Alanine racemase. 5 378 34.552 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 SUPERFAMILY SSF51419 12 251 8.04E-64 T 13-10-2018 IPR029066 PLP-binding barrel RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 SUPERFAMILY SSF50621 245 385 2.34E-46 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 Gene3D G3DSA:3.20.20.10 14 230 3.7E-72 T 13-10-2018 IPR029066 PLP-binding barrel RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 Pfam PF00842 Alanine racemase, C-terminal domain 250 377 1.7E-40 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 SMART SM01005 250 378 1.9E-59 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 36 46 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 Gene3D G3DSA:2.40.37.10 239 393 2.2E-58 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 284 299 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 305 322 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 208 235 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 130 142 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 31 47 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 360 373 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 67 85 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 165 176 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_11680 3d78c6a8eed2ddb0ecf2d39a184af9e9 393 PRINTS PR00992 Alanine racemase signature 267 282 5.2E-67 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_19085 57266116e6e3d924dacf1576484c0e83 294 Pfam PF14540 Nucleotidyltransferase-like 1 118 1.4E-48 T 13-10-2018 IPR029348 Nucleotidyltransferase-like domain RA13_19085 57266116e6e3d924dacf1576484c0e83 294 Gene3D G3DSA:3.30.460.10 1 114 3.0E-44 T 13-10-2018 RA13_19085 57266116e6e3d924dacf1576484c0e83 294 ProDom PD128250 YGXA BH0953 1 279 5.0E-152 T 13-10-2018 RA13_19085 57266116e6e3d924dacf1576484c0e83 294 Gene3D G3DSA:1.20.120.330 115 232 4.0E-48 T 13-10-2018 RA13_08460 c2cd0789769ed30d323356475e52acc4 257 Pfam PF01012 Electron transfer flavoprotein domain 24 206 4.4E-46 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RA13_08460 c2cd0789769ed30d323356475e52acc4 257 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 RA13_08460 c2cd0789769ed30d323356475e52acc4 257 SUPERFAMILY SSF52402 1 243 1.26E-73 T 13-10-2018 RA13_08460 c2cd0789769ed30d323356475e52acc4 257 PIRSF PIRSF000090 1 257 7.8E-78 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 RA13_08460 c2cd0789769ed30d323356475e52acc4 257 SMART SM00893 21 211 2.2E-58 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RA13_08460 c2cd0789769ed30d323356475e52acc4 257 Gene3D G3DSA:3.40.50.620 1 254 6.0E-83 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_00280 df87c878c8b45271d11345b8de65df8f 308 SUPERFAMILY SSF51569 4 297 1.57E-60 T 13-10-2018 RA13_00280 df87c878c8b45271d11345b8de65df8f 308 Pfam PF00701 Dihydrodipicolinate synthetase family 8 296 5.3E-99 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00280 df87c878c8b45271d11345b8de65df8f 308 PIRSF PIRSF001365 5 306 1.2E-50 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_00280 df87c878c8b45271d11345b8de65df8f 308 Gene3D G3DSA:3.20.20.70 3 304 5.3E-77 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_00280 df87c878c8b45271d11345b8de65df8f 308 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 7 298 40.811 T 13-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 RA13_00280 df87c878c8b45271d11345b8de65df8f 308 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 5 297 4.7E-140 T 13-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 RA13_00280 df87c878c8b45271d11345b8de65df8f 308 SMART SM01130 7 298 1.9E-60 T 13-10-2018 IPR002220 DapA-like GO:0016829 RA13_17520 8cfa47d63a56d1facc7aad926ac54a73 132 ProSitePatterns PS01213 Protozoan/cyanobacterial globins signature. 52 76 - T 13-10-2018 IPR019795 Globin, bacterial-like, conserved site GO:0015671|GO:0019825 RA13_17520 8cfa47d63a56d1facc7aad926ac54a73 132 Gene3D G3DSA:1.10.490.10 1 132 2.1E-56 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RA13_17520 8cfa47d63a56d1facc7aad926ac54a73 132 SUPERFAMILY SSF46458 8 124 1.98E-38 T 13-10-2018 IPR009050 Globin-like superfamily RA13_17520 8cfa47d63a56d1facc7aad926ac54a73 132 Pfam PF01152 Bacterial-like globin 9 122 5.7E-32 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 RA13_09660 3bca65c4b5ebacd2c770414037e53358 711 Pfam PF07697 7TM-HD extracellular 53 269 7.1E-39 T 13-10-2018 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain RA13_09660 3bca65c4b5ebacd2c770414037e53358 711 Gene3D G3DSA:1.10.3210.10 473 667 2.9E-26 T 13-10-2018 RA13_09660 3bca65c4b5ebacd2c770414037e53358 711 SMART SM00471 496 651 1.1E-11 T 13-10-2018 IPR003607 HD/PDEase domain RA13_09660 3bca65c4b5ebacd2c770414037e53358 711 SUPERFAMILY SSF109604 499 657 1.32E-14 T 13-10-2018 RA13_09660 3bca65c4b5ebacd2c770414037e53358 711 Pfam PF07698 7TM receptor with intracellular HD hydrolase 276 475 2.0E-50 T 13-10-2018 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain RA13_09660 3bca65c4b5ebacd2c770414037e53358 711 TIGRFAM TIGR00277 HDIG: HDIG domain 497 595 2.2E-28 T 13-10-2018 IPR006675 HDIG domain RA13_09660 3bca65c4b5ebacd2c770414037e53358 711 Pfam PF01966 HD domain 500 641 1.2E-18 T 13-10-2018 IPR006674 HD domain RA13_02795 128348fcf3acb919b584db27fb4c8436 473 SUPERFAMILY SSF75005 16 363 1.86E-62 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_02795 128348fcf3acb919b584db27fb4c8436 473 Pfam PF04616 Glycosyl hydrolases family 43 35 283 2.2E-29 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RA13_02795 128348fcf3acb919b584db27fb4c8436 473 Gene3D G3DSA:2.115.10.20 42 366 1.1E-116 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_02795 128348fcf3acb919b584db27fb4c8436 473 Pfam PF16369 C-terminal of Glycosyl hydrolases family 43 367 470 4.4E-37 T 13-10-2018 IPR032291 Extracellular endo-alpha-(1->5)-L-arabinanase, C-terminal RA13_02795 128348fcf3acb919b584db27fb4c8436 473 Gene3D G3DSA:2.40.128.10 379 473 4.7E-35 T 13-10-2018 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 Gene3D G3DSA:3.40.47.10 126 390 1.3E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 SUPERFAMILY SSF53901 271 391 4.87E-38 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 Pfam PF02803 Thiolase, C-terminal domain 271 391 5.9E-48 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 1.4E-141 T 13-10-2018 IPR002155 Thiolase GO:0016747 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 Gene3D G3DSA:3.40.47.10 6 276 1.3E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 Pfam PF00108 Thiolase, N-terminal domain 5 263 4.1E-100 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 SUPERFAMILY SSF53901 4 269 1.83E-80 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RA13_10250 3992a5d641e4a86fa0620187d1358b16 393 PIRSF PIRSF000429 1 393 1.9E-119 T 13-10-2018 IPR002155 Thiolase GO:0016747 RA13_00915 dcb894d2228dd27482600eef0713ae2a 131 Gene3D G3DSA:3.30.420.80 3 131 6.2E-54 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_00915 dcb894d2228dd27482600eef0713ae2a 131 Pfam PF00411 Ribosomal protein S11 21 130 8.0E-52 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RA13_00915 dcb894d2228dd27482600eef0713ae2a 131 PIRSF PIRSF002131 1 131 2.8E-53 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RA13_00915 dcb894d2228dd27482600eef0713ae2a 131 SUPERFAMILY SSF53137 16 131 2.55E-49 T 13-10-2018 RA13_00915 dcb894d2228dd27482600eef0713ae2a 131 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 12 128 2.3E-58 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_00915 dcb894d2228dd27482600eef0713ae2a 131 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 5 131 34.313 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RA13_00915 dcb894d2228dd27482600eef0713ae2a 131 ProSitePatterns PS00054 Ribosomal protein S11 signature. 99 121 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site RA13_00315 64d8782bb32aa5f004f6ed3ea1fc52b9 355 ProSitePatterns PS00770 Aminotransferases class-IV signature. 232 261 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 RA13_00315 64d8782bb32aa5f004f6ed3ea1fc52b9 355 Gene3D G3DSA:3.30.470.10 24 351 4.4E-137 T 13-10-2018 RA13_00315 64d8782bb32aa5f004f6ed3ea1fc52b9 355 Gene3D G3DSA:3.20.10.10 170 338 4.4E-137 T 13-10-2018 RA13_00315 64d8782bb32aa5f004f6ed3ea1fc52b9 355 SUPERFAMILY SSF56752 3 352 1.7E-117 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RA13_00315 64d8782bb32aa5f004f6ed3ea1fc52b9 355 PIRSF PIRSF006468 2 355 8.9E-130 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RA13_00315 64d8782bb32aa5f004f6ed3ea1fc52b9 355 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 43 355 9.6E-134 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RA13_00315 64d8782bb32aa5f004f6ed3ea1fc52b9 355 Pfam PF01063 Amino-transferase class IV 68 311 1.0E-39 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RA13_15615 a7f80af6159cb488308a8995159886c4 311 SUPERFAMILY SSF81799 113 214 1.83E-36 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RA13_15615 a7f80af6159cb488308a8995159886c4 311 SUPERFAMILY SSF53335 4 309 7.15E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_15615 a7f80af6159cb488308a8995159886c4 311 PIRSF PIRSF004486 1 311 3.2E-110 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RA13_15615 a7f80af6159cb488308a8995159886c4 311 Gene3D G3DSA:1.10.150.170 111 215 2.7E-107 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RA13_15615 a7f80af6159cb488308a8995159886c4 311 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 309 3.9E-135 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RA13_15615 a7f80af6159cb488308a8995159886c4 311 Pfam PF01795 MraW methylase family 2 310 8.3E-137 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RA13_15615 a7f80af6159cb488308a8995159886c4 311 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 4 310 39.243 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RA13_15615 a7f80af6159cb488308a8995159886c4 311 Gene3D G3DSA:3.40.50.150 7 309 2.7E-107 T 13-10-2018 RA13_07060 dced561c7ccbb4f8fd830dab16ebcd88 490 Gene3D G3DSA:3.40.309.10 253 446 1.9E-194 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_07060 dced561c7ccbb4f8fd830dab16ebcd88 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 6 474 9.4E-242 T 13-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 RA13_07060 dced561c7ccbb4f8fd830dab16ebcd88 490 SUPERFAMILY SSF53720 4 481 2.36E-173 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_07060 dced561c7ccbb4f8fd830dab16ebcd88 490 Pfam PF00171 Aldehyde dehydrogenase family 11 476 7.3E-184 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_07060 dced561c7ccbb4f8fd830dab16ebcd88 490 Gene3D G3DSA:3.40.605.10 10 471 1.9E-194 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_07060 dced561c7ccbb4f8fd830dab16ebcd88 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_07060 dced561c7ccbb4f8fd830dab16ebcd88 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_16155 0aba1cd021640f24218ffae0909344be 406 Gene3D G3DSA:1.20.5.170 246 290 7.9E-25 T 13-10-2018 RA13_16155 0aba1cd021640f24218ffae0909344be 406 Pfam PF00563 EAL domain 13 236 6.8E-31 T 13-10-2018 IPR001633 EAL domain RA13_16155 0aba1cd021640f24218ffae0909344be 406 Pfam PF10388 EAL-domain associated signalling protein domain 240 406 6.1E-81 T 13-10-2018 IPR018842 YkuI, C-terminal RA13_16155 0aba1cd021640f24218ffae0909344be 406 SUPERFAMILY SSF103190 263 404 9.42E-47 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_16155 0aba1cd021640f24218ffae0909344be 406 SMART SM00052 1 241 7.9E-52 T 13-10-2018 IPR001633 EAL domain RA13_16155 0aba1cd021640f24218ffae0909344be 406 Gene3D G3DSA:3.20.20.450 1 229 2.9E-76 T 13-10-2018 IPR035919 EAL domain superfamily RA13_16155 0aba1cd021640f24218ffae0909344be 406 Gene3D G3DSA:3.30.450.20 291 406 4.4E-49 T 13-10-2018 RA13_16155 0aba1cd021640f24218ffae0909344be 406 SUPERFAMILY SSF141868 6 259 1.96E-43 T 13-10-2018 IPR035919 EAL domain superfamily RA13_06175 6ae1014719f60c9b8e60b4c092f6f722 413 Gene3D G3DSA:3.30.70.360 216 330 6.0E-129 T 13-10-2018 RA13_06175 6ae1014719f60c9b8e60b4c092f6f722 413 Gene3D G3DSA:3.40.630.10 24 404 6.0E-129 T 13-10-2018 RA13_06175 6ae1014719f60c9b8e60b4c092f6f722 413 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 13 411 1.8E-130 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 RA13_06175 6ae1014719f60c9b8e60b4c092f6f722 413 PIRSF PIRSF001235 8 413 2.6E-139 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 RA13_06175 6ae1014719f60c9b8e60b4c092f6f722 413 SUPERFAMILY SSF53187 14 412 1.06E-78 T 13-10-2018 RA13_06175 6ae1014719f60c9b8e60b4c092f6f722 413 Pfam PF01546 Peptidase family M20/M25/M40 81 409 1.2E-31 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_06175 6ae1014719f60c9b8e60b4c092f6f722 413 SUPERFAMILY SSF55031 216 332 7.85E-23 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_20660 7c33c0ff1f0efbf8906d1f1d78de7ff2 315 Gene3D G3DSA:2.60.120.10 1 225 2.1E-94 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_20660 7c33c0ff1f0efbf8906d1f1d78de7ff2 315 Pfam PF01238 Phosphomannose isomerase type I 8 196 1.6E-43 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RA13_20660 7c33c0ff1f0efbf8906d1f1d78de7ff2 315 Gene3D G3DSA:2.60.120.10 228 315 1.6E-27 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_20660 7c33c0ff1f0efbf8906d1f1d78de7ff2 315 PIRSF PIRSF036894 3 315 6.9E-134 T 13-10-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 RA13_20660 7c33c0ff1f0efbf8906d1f1d78de7ff2 315 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 6 102 3.6E-34 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RA13_20660 7c33c0ff1f0efbf8906d1f1d78de7ff2 315 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 100 313 1.6E-62 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RA13_20660 7c33c0ff1f0efbf8906d1f1d78de7ff2 315 SUPERFAMILY SSF51182 2 312 5.1E-107 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.1E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 SUPERFAMILY SSF53850 88 293 2.04E-37 T 13-10-2018 RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 SUPERFAMILY SSF46785 2 84 9.25E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 Gene3D G3DSA:3.40.190.290 91 295 1.4E-37 T 13-10-2018 RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 Pfam PF03466 LysR substrate binding domain 87 290 3.2E-44 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 Gene3D G3DSA:1.10.10.10 1 90 2.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_04435 b8f4e8e0975e8ad0925940ca0c77941b 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 SUPERFAMILY SSF55604 8 83 1.7E-19 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 29 111 1.4E-23 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 Pfam PF00367 phosphotransferase system, EIIB 9 41 8.9E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 Pfam PF02378 Phosphotransferase system, EIIC 112 410 7.4E-46 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 165 452 8.1E-92 T 13-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 465 9.9E-219 T 13-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 RA13_19535 6bdddd758fa8b6fd2fd57250f4089ad2 470 Gene3D G3DSA:3.30.1360.60 3 79 2.3E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_13515 00499c4b42865e55f046f071c53add11 199 Pfam PF03838 Recombination protein U 44 129 1.0E-5 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 RA13_13515 00499c4b42865e55f046f071c53add11 199 Gene3D G3DSA:3.40.1350.10 11 178 6.2E-8 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RA13_13515 00499c4b42865e55f046f071c53add11 199 SUPERFAMILY SSF52980 12 170 1.75E-21 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 Gene3D G3DSA:3.10.350.10 156 214 1.4E-22 T 13-10-2018 IPR036779 LysM domain superfamily RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 SMART SM00257 160 204 1.0E-21 T 13-10-2018 IPR018392 LysM domain RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 Gene3D G3DSA:3.40.80.10 1 154 1.0E-56 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 SMART SM00644 11 153 3.1E-32 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 SUPERFAMILY SSF55846 1 153 7.33E-47 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 25 140 1.6E-22 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 SUPERFAMILY SSF54106 159 203 3.92E-14 T 13-10-2018 RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 Pfam PF01476 LysM domain 161 203 6.1E-19 T 13-10-2018 IPR018392 LysM domain RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 Pfam PF01471 Putative peptidoglycan binding domain 230 291 2.5E-17 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 Gene3D G3DSA:1.10.101.10 220 296 1.8E-18 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_16865 0c664c96fab2b45a23ce9fded7c03d4b 297 SUPERFAMILY SSF47090 225 292 1.94E-16 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_15580 cb9d02d0bf024bb15f655000f84f0da5 366 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 10 363 2.8E-133 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15580 cb9d02d0bf024bb15f655000f84f0da5 366 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 9 362 2.9E-101 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15580 cb9d02d0bf024bb15f655000f84f0da5 366 TIGRFAM TIGR02615 spoVE: stage V sporulation protein E 9 362 1.3E-188 T 13-10-2018 IPR013438 Sporulation stage V, protein E RA13_15580 cb9d02d0bf024bb15f655000f84f0da5 366 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 322 346 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15580 cb9d02d0bf024bb15f655000f84f0da5 366 Pfam PF01098 Cell cycle protein 11 365 6.2E-133 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_01670 a645db14dbc208ec1786e27aa0919816 207 Gene3D G3DSA:3.40.50.300 5 207 5.5E-52 T 13-10-2018 RA13_01670 a645db14dbc208ec1786e27aa0919816 207 Pfam PF01712 Deoxynucleoside kinase 7 207 2.0E-59 T 13-10-2018 IPR031314 Deoxynucleoside kinase domain RA13_01670 a645db14dbc208ec1786e27aa0919816 207 SUPERFAMILY SSF52540 1 205 8.59E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01670 a645db14dbc208ec1786e27aa0919816 207 PIRSF PIRSF000705 1 207 2.7E-60 T 13-10-2018 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 RA13_02005 eb032c757dab2841a639832aef55a6af 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 2.4E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_02005 eb032c757dab2841a639832aef55a6af 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 3.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_02005 eb032c757dab2841a639832aef55a6af 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 3.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_02005 eb032c757dab2841a639832aef55a6af 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 3.2E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_02005 eb032c757dab2841a639832aef55a6af 213 SMART SM00448 2 114 3.7E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_02005 eb032c757dab2841a639832aef55a6af 213 Pfam PF00072 Response regulator receiver domain 4 112 2.6E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_02005 eb032c757dab2841a639832aef55a6af 213 SUPERFAMILY SSF46894 137 209 2.58E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_02005 eb032c757dab2841a639832aef55a6af 213 Gene3D G3DSA:3.40.50.12740 3 209 1.1E-63 T 13-10-2018 RA13_02005 eb032c757dab2841a639832aef55a6af 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_02005 eb032c757dab2841a639832aef55a6af 213 SMART SM00421 146 203 5.2E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_02005 eb032c757dab2841a639832aef55a6af 213 SUPERFAMILY SSF52172 1 131 9.53E-36 T 13-10-2018 IPR011006 CheY-like superfamily RA13_00395 c31e5c2a4247e21829deacd30ded9989 257 Pfam PF13624 SurA N-terminal domain 65 182 1.7E-17 T 13-10-2018 RA13_00395 c31e5c2a4247e21829deacd30ded9989 257 SUPERFAMILY SSF109998 67 206 1.51E-28 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily RA13_00395 c31e5c2a4247e21829deacd30ded9989 257 Gene3D G3DSA:1.10.4030.30 60 256 3.0E-28 T 13-10-2018 RA13_12645 2461605232963249a05b5ceaa46a60b4 141 Pfam PF04138 GtrA-like protein 11 124 1.4E-29 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RA13_11780 631c5e73a9012828dc8f4f7d042df0b1 212 Gene3D G3DSA:1.20.144.10 2 110 7.4E-11 T 13-10-2018 RA13_11780 631c5e73a9012828dc8f4f7d042df0b1 212 Gene3D G3DSA:1.20.144.10 111 212 3.2E-26 T 13-10-2018 RA13_11780 631c5e73a9012828dc8f4f7d042df0b1 212 Pfam PF01569 PAP2 superfamily 80 195 3.7E-23 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RA13_11780 631c5e73a9012828dc8f4f7d042df0b1 212 SMART SM00014 77 191 4.5E-22 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RA13_11780 631c5e73a9012828dc8f4f7d042df0b1 212 SUPERFAMILY SSF48317 9 200 2.22E-36 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 Pfam PF02110 Hydroxyethylthiazole kinase family 12 257 3.2E-96 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 12 261 33.551 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 SUPERFAMILY SSF53613 10 267 1.29E-58 T 13-10-2018 IPR029056 Ribokinase-like RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 11 259 2.1E-99 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 88 105 1.8E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 31 52 1.8E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 119 133 1.8E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 62 70 1.8E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 18 25 1.8E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 164 181 1.8E-42 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 PIRSF PIRSF000513 4 269 4.1E-99 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03375 bf276db2adb7bade72a4fc55e7c73c8f 271 Gene3D G3DSA:3.40.1190.20 1 271 1.1E-98 T 13-10-2018 IPR029056 Ribokinase-like RA13_19100 411c5a336e691c580b330c55906dc07c 157 Pfam PF00578 AhpC/TSA family 5 131 1.4E-40 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_19100 411c5a336e691c580b330c55906dc07c 157 PIRSF PIRSF000239 1 156 3.2E-29 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_19100 411c5a336e691c580b330c55906dc07c 157 Gene3D G3DSA:3.40.30.10 1 155 2.0E-55 T 13-10-2018 RA13_19100 411c5a336e691c580b330c55906dc07c 157 SUPERFAMILY SSF52833 3 154 1.03E-53 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_03355 d81c237aa71a5c2610b92d5599a83eb7 216 Gene3D G3DSA:3.40.50.300 2 216 5.0E-55 T 13-10-2018 RA13_03355 d81c237aa71a5c2610b92d5599a83eb7 216 SUPERFAMILY SSF52540 5 210 2.61E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03355 d81c237aa71a5c2610b92d5599a83eb7 216 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_03355 d81c237aa71a5c2610b92d5599a83eb7 216 SMART SM00382 29 207 2.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03355 d81c237aa71a5c2610b92d5599a83eb7 216 Pfam PF00005 ABC transporter 20 160 1.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05805 550492c9b282d4af770d5d5538804c52 229 Gene3D G3DSA:3.40.50.300 1 227 4.4E-72 T 13-10-2018 RA13_05805 550492c9b282d4af770d5d5538804c52 229 Pfam PF00005 ABC transporter 21 169 6.8E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05805 550492c9b282d4af770d5d5538804c52 229 SMART SM00382 30 217 2.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05805 550492c9b282d4af770d5d5538804c52 229 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_05805 550492c9b282d4af770d5d5538804c52 229 SUPERFAMILY SSF52540 1 221 4.24E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Pfam PF13361 UvrD-like helicase C-terminal domain 472 881 2.1E-34 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1054 1226 2.3E-10 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 461 4.3E-105 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Hamap MF_01451 ATP-dependent helicase/nuclease subunit A [addA]. 8 1234 20.069 T 13-10-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 SUPERFAMILY SSF52980 1014 1232 3.97E-41 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 SUPERFAMILY SSF52540 5 887 9.85E-121 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Gene3D G3DSA:3.40.50.300 261 474 2.9E-34 T 13-10-2018 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Gene3D G3DSA:3.40.50.300 2 187 6.4E-41 T 13-10-2018 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Gene3D G3DSA:3.40.50.300 475 755 4.1E-62 T 13-10-2018 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Gene3D G3DSA:3.40.50.300 756 960 9.9E-52 T 13-10-2018 RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 Gene3D G3DSA:3.90.320.10 991 1234 1.5E-88 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal RA13_17995 a3858962532ccfc759a4abf8ebd40915 1234 TIGRFAM TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit 10 1234 0.0 T 13-10-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 SMART SM01383 42 118 3.1E-45 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 Gene3D G3DSA:2.30.30.30 118 196 1.5E-34 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 PIRSF PIRSF002158 3 276 4.1E-99 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 275 1.0E-140 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 Gene3D G3DSA:4.10.950.10 197 276 3.0E-35 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 4.5E-33 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 Gene3D G3DSA:2.40.50.140 1 114 7.4E-49 T 13-10-2018 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 SUPERFAMILY SSF50249 2 125 2.06E-51 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_01035 b19f428047499527ee66dbfddd8bf432 277 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 5.4E-57 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 275 49.514 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 SMART SM01382 124 253 6.3E-92 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RA13_01035 b19f428047499527ee66dbfddd8bf432 277 SUPERFAMILY SSF50104 126 273 1.93E-60 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RA13_12775 8ccc885b1558ac03f9cb4ed4e4876a7e 72 Pfam PF03672 Uncharacterised protein family (UPF0154) 11 69 1.9E-30 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 RA13_12775 8ccc885b1558ac03f9cb4ed4e4876a7e 72 Hamap MF_00363 UPF0154 protein . 2 72 22.343 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 RA13_12775 8ccc885b1558ac03f9cb4ed4e4876a7e 72 ProDom PD048972 UPF0154 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED FAMILY YNEF SUPERFAMILY MG335.1 EXPORTED MYCGA5700 1 41 0.003 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 RA13_08725 0ba6e34ca780ccdcdcb1b920d4a7145d 290 Pfam PF04085 rod shape-determining protein MreC 119 277 1.2E-42 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RA13_08725 0ba6e34ca780ccdcdcb1b920d4a7145d 290 Gene3D G3DSA:2.40.10.340 109 185 3.2E-21 T 13-10-2018 RA13_08725 0ba6e34ca780ccdcdcb1b920d4a7145d 290 PIRSF PIRSF038471 1 290 9.8E-60 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RA13_08725 0ba6e34ca780ccdcdcb1b920d4a7145d 290 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 288 2.9E-107 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RA13_08725 0ba6e34ca780ccdcdcb1b920d4a7145d 290 Gene3D G3DSA:2.40.10.350 186 264 4.3E-25 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 SUPERFAMILY SSF51569 527 838 4.58E-80 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 SUPERFAMILY SSF56059 89 333 1.94E-70 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 PIRSF PIRSF001594 2 1148 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Gene3D G3DSA:3.10.600.10 465 507 1.7E-7 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Gene3D G3DSA:1.10.10.2790 945 980 1.0E-287 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Pfam PF02436 Conserved carboxylase domain 830 1030 2.0E-79 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Pfam PF00289 Biotin carboxylase, N-terminal domain 7 116 1.8E-43 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Gene3D G3DSA:3.20.20.70 515 819 1.0E-287 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Gene3D G3DSA:1.10.472.90 820 944 1.0E-287 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Gene3D G3DSA:3.10.600.10 511 1062 1.0E-287 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 SUPERFAMILY SSF52440 5 118 2.52E-45 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 SUPERFAMILY SSF51246 343 461 1.41E-36 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Gene3D G3DSA:3.30.470.130 1 462 1.3E-195 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Pfam PF00682 HMGL-like 535 806 5.4E-26 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 9 1147 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 SUPERFAMILY SSF89000 835 1011 9.42E-60 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 SMART SM00878 347 454 9.4E-49 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Gene3D G3DSA:2.40.50.100 1070 1149 3.3E-24 T 13-10-2018 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Pfam PF00364 Biotin-requiring enzyme 1080 1146 8.8E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 SUPERFAMILY SSF51230 1072 1147 2.09E-21 T 13-10-2018 IPR011053 Single hybrid motif RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 121 327 1.3E-78 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 291 298 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_15765 009ba629cd11ce1548fef7241109acc4 1149 Pfam PF02785 Biotin carboxylase C-terminal domain 347 454 2.4E-31 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 Pfam PF03772 Competence protein 208 467 9.9E-64 T 13-10-2018 IPR004477 ComEC/Rec2-related protein RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 229 399 1.7E-45 T 13-10-2018 IPR004477 ComEC/Rec2-related protein RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 Pfam PF00753 Metallo-beta-lactamase superfamily 508 719 1.6E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 68 749 2.7E-217 T 13-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 SMART SM00849 509 720 2.7E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 SUPERFAMILY SSF56281 501 755 1.9E-49 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 Gene3D G3DSA:3.60.15.10 498 760 3.7E-71 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_09515 8c20d18f6cf00e99c06798a842ed7c95 777 Pfam PF13567 Domain of unknown function (DUF4131) 25 169 3.7E-20 T 13-10-2018 IPR025405 Domain of unknown function DUF4131 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 SUPERFAMILY SSF50615 2 82 1.12E-26 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 Gene3D G3DSA:2.40.10.170 1 82 4.0E-31 T 13-10-2018 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 469 57.283 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 138 351 2.1E-66 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 SUPERFAMILY SSF52540 84 354 5.4E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 SUPERFAMILY SSF47917 354 469 6.8E-52 T 13-10-2018 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 79 7.0E-23 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 SMART SM00382 150 335 9.9E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 469 5.6E-259 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 342 351 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 Gene3D G3DSA:3.40.50.300 84 352 1.1E-111 T 13-10-2018 RA13_04055 46c270228f86baf8590dc89a45ebc9aa 473 Gene3D G3DSA:1.10.1140.10 354 472 7.2E-57 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_03915 0ffb7979c5367f72bd96b8fb4b91c4ad 321 SUPERFAMILY SSF56655 1 312 8.55E-111 T 13-10-2018 RA13_03915 0ffb7979c5367f72bd96b8fb4b91c4ad 321 PIRSF PIRSF004532 1 320 2.4E-150 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RA13_03915 0ffb7979c5367f72bd96b8fb4b91c4ad 321 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 309 6.8E-142 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RA13_03915 0ffb7979c5367f72bd96b8fb4b91c4ad 321 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 320 7.5E-165 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 RA13_03915 0ffb7979c5367f72bd96b8fb4b91c4ad 321 Gene3D G3DSA:3.40.190.90 122 283 2.6E-132 T 13-10-2018 RA13_03915 0ffb7979c5367f72bd96b8fb4b91c4ad 321 Gene3D G3DSA:3.30.540.10 7 309 2.6E-132 T 13-10-2018 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 SUPERFAMILY SSF63380 151 254 5.28E-28 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 PRINTS PR00409 Phthalate dioxygenase reductase family signature 179 189 3.7E-9 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 PRINTS PR00409 Phthalate dioxygenase reductase family signature 263 282 3.7E-9 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 PRINTS PR00409 Phthalate dioxygenase reductase family signature 226 240 3.7E-9 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 51.51 T 13-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 Pfam PF00042 Globin 8 102 3.9E-10 T 13-10-2018 IPR000971 Globin GO:0020037 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 Gene3D G3DSA:2.40.30.10 152 253 3.1E-34 T 13-10-2018 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 Pfam PF00970 Oxidoreductase FAD-binding domain 160 252 1.1E-8 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 Pfam PF00175 Oxidoreductase NAD-binding domain 264 371 2.5E-16 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 Gene3D G3DSA:1.10.490.10 1 144 5.9E-59 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 SUPERFAMILY SSF46458 1 144 1.03E-42 T 13-10-2018 IPR009050 Globin-like superfamily RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 Gene3D G3DSA:3.40.50.80 254 397 1.3E-32 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_12560 f39c3a8979847d1174023ea2dfe76080 400 SUPERFAMILY SSF52343 256 392 2.88E-31 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_11095 afc425ba9d75de3c740977bca57881b1 250 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 4 249 31.021 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RA13_11095 afc425ba9d75de3c740977bca57881b1 250 Pfam PF00218 Indole-3-glycerol phosphate synthase 2 247 8.8E-86 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RA13_11095 afc425ba9d75de3c740977bca57881b1 250 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 42 60 - T 13-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 RA13_11095 afc425ba9d75de3c740977bca57881b1 250 SUPERFAMILY SSF51366 21 249 3.88E-75 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_11095 afc425ba9d75de3c740977bca57881b1 250 Gene3D G3DSA:3.20.20.70 1 250 4.8E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 Pfam PF01546 Peptidase family M20/M25/M40 86 415 7.3E-30 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 Gene3D G3DSA:3.30.70.360 192 321 2.1E-26 T 13-10-2018 RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 SUPERFAMILY SSF53187 6 419 5.47E-61 T 13-10-2018 RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 Gene3D G3DSA:3.40.630.10 322 424 3.0E-14 T 13-10-2018 RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 20 410 3.8E-133 T 13-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 Pfam PF07687 Peptidase dimerisation domain 187 306 5.0E-25 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 SUPERFAMILY SSF55031 214 304 7.48E-8 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_15510 642fe5c965a73112a330aa22ff52a0a5 425 Gene3D G3DSA:3.40.630.10 9 191 4.2E-46 T 13-10-2018 RA13_01170 7688d55543e62eed56123a8709e3f566 483 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_01170 7688d55543e62eed56123a8709e3f566 483 Gene3D G3DSA:3.40.50.620 1 332 2.0E-144 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_01170 7688d55543e62eed56123a8709e3f566 483 SUPERFAMILY SSF52374 5 316 3.75E-115 T 13-10-2018 RA13_01170 7688d55543e62eed56123a8709e3f566 483 Gene3D G3DSA:1.10.10.350 390 483 3.2E-34 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RA13_01170 7688d55543e62eed56123a8709e3f566 483 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 323 4.8E-130 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RA13_01170 7688d55543e62eed56123a8709e3f566 483 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 4 481 1.2E-207 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RA13_01170 7688d55543e62eed56123a8709e3f566 483 SUPERFAMILY SSF48163 298 483 1.29E-51 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RA13_01170 7688d55543e62eed56123a8709e3f566 483 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 204 1.3E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RA13_01170 7688d55543e62eed56123a8709e3f566 483 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 218 1.3E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RA13_01170 7688d55543e62eed56123a8709e3f566 483 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 1.3E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RA13_01170 7688d55543e62eed56123a8709e3f566 483 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 1.3E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RA13_01170 7688d55543e62eed56123a8709e3f566 483 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 1.3E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RA13_01170 7688d55543e62eed56123a8709e3f566 483 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 4 483 34.373 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 SUPERFAMILY SSF55347 129 328 1.96E-73 T 13-10-2018 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 Gene3D G3DSA:3.40.50.720 7 338 1.1E-139 T 13-10-2018 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 7 120 8.7E-34 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 341 37.582 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 327 1.7E-58 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 237 251 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 PIRSF PIRSF000148 4 346 3.3E-127 T 13-10-2018 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 SMART SM00859 6 121 6.1E-41 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 Gene3D G3DSA:3.30.360.10 128 324 1.1E-139 T 13-10-2018 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 342 5.9E-167 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_14795 fc3a4dae68e5f863a80464b9ae3052c0 346 SUPERFAMILY SSF51735 5 157 8.01E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_11775 4a8e7227146366044d8647dbb8048a16 58 ProDom PD052277 YOZD 1 56 4.0E-21 T 13-10-2018 RA13_11775 4a8e7227146366044d8647dbb8048a16 58 Pfam PF14162 YozD-like protein 1 57 2.9E-33 T 13-10-2018 IPR025545 YozD-like protein RA13_00750 55cec33a75a5af3ae531470ca7c6166f 317 Gene3D G3DSA:3.40.50.1980 162 317 1.3E-47 T 13-10-2018 RA13_00750 55cec33a75a5af3ae531470ca7c6166f 317 Gene3D G3DSA:3.40.50.1980 36 161 1.7E-29 T 13-10-2018 RA13_00750 55cec33a75a5af3ae531470ca7c6166f 317 SUPERFAMILY SSF53807 45 309 5.49E-59 T 13-10-2018 RA13_00750 55cec33a75a5af3ae531470ca7c6166f 317 Pfam PF01497 Periplasmic binding protein 96 288 2.4E-33 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_21670 c5997e3e46a4777811bc03a0b4a42047 442 Pfam PF00155 Aminotransferase class I and II 98 436 6.4E-23 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_21670 c5997e3e46a4777811bc03a0b4a42047 442 SMART SM00345 7 66 9.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_21670 c5997e3e46a4777811bc03a0b4a42047 442 Gene3D G3DSA:3.40.640.10 69 436 4.0E-86 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_21670 c5997e3e46a4777811bc03a0b4a42047 442 Gene3D G3DSA:1.10.10.10 2 68 1.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21670 c5997e3e46a4777811bc03a0b4a42047 442 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 66 4.4E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_21670 c5997e3e46a4777811bc03a0b4a42047 442 SUPERFAMILY SSF53383 62 439 6.26E-71 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_21670 c5997e3e46a4777811bc03a0b4a42047 442 SUPERFAMILY SSF46785 3 76 7.21E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 Gene3D G3DSA:1.25.40.10 466 833 1.7E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 Pfam PF00931 NB-ARC domain 197 392 1.3E-7 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 SUPERFAMILY SSF48452 701 820 1.86E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 SMART SM00382 193 411 4.9E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 SUPERFAMILY SSF52540 165 352 2.13E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 SMART SM00028 615 651 420.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 SMART SM00028 700 733 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 SMART SM00028 778 811 12.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 SMART SM00028 739 771 17.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 Pfam PF13176 Tetratricopeptide repeat 741 768 0.013 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_20355 6f1b9c434d3666569786f498e4c97b35 834 Gene3D G3DSA:3.40.50.300 159 324 8.0E-18 T 13-10-2018 RA13_03400 bf13d704f263e7a901a4cfcc20779b1c 225 ProDom PD039486 BIOSYNTHESIS STRF STREPTOMYCIN ENZYME ANTIBIOTIC 10 120 0.007 T 13-10-2018 RA13_03400 bf13d704f263e7a901a4cfcc20779b1c 225 Pfam PF13712 Glycosyltransferase like family 8 219 6.1E-78 T 13-10-2018 RA13_03400 bf13d704f263e7a901a4cfcc20779b1c 225 Gene3D G3DSA:3.90.550.10 6 225 2.2E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19440 35afa8e0f0ea970c6837fcde5591c38a 373 Pfam PF04055 Radical SAM superfamily 37 190 1.3E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_19440 35afa8e0f0ea970c6837fcde5591c38a 373 Pfam PF08756 YfkB-like domain 221 370 1.2E-78 T 13-10-2018 IPR014866 YfkB-like domain RA13_19440 35afa8e0f0ea970c6837fcde5591c38a 373 Gene3D G3DSA:3.20.20.70 23 294 1.6E-22 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_19440 35afa8e0f0ea970c6837fcde5591c38a 373 Pfam PF13353 4Fe-4S single cluster domain 41 114 3.1E-5 T 13-10-2018 RA13_19440 35afa8e0f0ea970c6837fcde5591c38a 373 TIGRFAM TIGR04478 rSAM_YfkAB: radical SAM/CxCxxxxC motif protein YfkAB 9 371 1.9E-197 T 13-10-2018 IPR031004 Radical SAM/CxCxxxxC motif protein YfkAB RA13_19440 35afa8e0f0ea970c6837fcde5591c38a 373 SUPERFAMILY SSF102114 32 326 2.22E-27 T 13-10-2018 RA13_21475 28959ad44b3717af5fc554959529168d 292 Gene3D G3DSA:1.10.357.10 2 195 1.6E-21 T 13-10-2018 RA13_21475 28959ad44b3717af5fc554959529168d 292 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 7.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_21475 28959ad44b3717af5fc554959529168d 292 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 7.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_21475 28959ad44b3717af5fc554959529168d 292 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 6.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_21475 28959ad44b3717af5fc554959529168d 292 SUPERFAMILY SSF46689 3 64 6.16E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_17835 7618c378e3df86c59cc95a9327148974 236 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 45 233 8.6E-75 T 13-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 RA13_17835 7618c378e3df86c59cc95a9327148974 236 SUPERFAMILY SSF52402 17 198 5.12E-51 T 13-10-2018 RA13_17835 7618c378e3df86c59cc95a9327148974 236 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 4 235 40.701 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RA13_17835 7618c378e3df86c59cc95a9327148974 236 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 39 211 1.4E-53 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RA13_17835 7618c378e3df86c59cc95a9327148974 236 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 27 234 4.0E-98 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RA13_17835 7618c378e3df86c59cc95a9327148974 236 Gene3D G3DSA:3.40.50.620 2 236 1.3E-77 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_17835 7618c378e3df86c59cc95a9327148974 236 PIRSF PIRSF000857 4 236 3.1E-88 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RA13_00840 fc16cd0be0906468d104e7efef8f81e2 352 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 109 344 5.9E-84 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RA13_00840 fc16cd0be0906468d104e7efef8f81e2 352 ProSitePatterns PS01215 Mrp family signature. 210 226 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 RA13_00840 fc16cd0be0906468d104e7efef8f81e2 352 SUPERFAMILY SSF52540 100 313 1.38E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00840 fc16cd0be0906468d104e7efef8f81e2 352 Gene3D G3DSA:3.40.50.300 105 322 4.7E-67 T 13-10-2018 RA13_00840 fc16cd0be0906468d104e7efef8f81e2 352 Hamap MF_02040 Iron-sulfur cluster carrier protein. 97 345 33.375 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein RA13_20100 f55da6ed308498f4fca504e17015c8f5 331 SUPERFAMILY SSF159774 34 324 1.44E-97 T 13-10-2018 IPR023158 YerB-like superfamily RA13_20100 f55da6ed308498f4fca504e17015c8f5 331 Gene3D G3DSA:3.50.90.10 20 331 4.3E-127 T 13-10-2018 IPR023158 YerB-like superfamily RA13_20100 f55da6ed308498f4fca504e17015c8f5 331 Pfam PF17479 Protein of unknown function (DUF3048) C-terminal domain 211 314 1.7E-23 T 13-10-2018 IPR035328 Protein of unknown function DUF3048, C-terminal domain RA13_20100 f55da6ed308498f4fca504e17015c8f5 331 Pfam PF11258 Protein of unknown function (DUF3048) N-terminal domain 37 179 3.3E-52 T 13-10-2018 IPR021416 Protein of unknown function DUF3048, N-terminal RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 SUPERFAMILY SSF54184 659 713 7.46E-12 T 13-10-2018 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Gene3D G3DSA:3.40.710.10 236 585 1.5E-94 T 13-10-2018 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Gene3D G3DSA:2.20.70.70 58 229 9.3E-59 T 13-10-2018 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 SUPERFAMILY SSF54184 601 656 1.96E-12 T 13-10-2018 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 SUPERFAMILY SSF56519 59 242 6.28E-45 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 SUPERFAMILY SSF56601 193 594 1.16E-88 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Pfam PF03793 PASTA domain 602 655 2.0E-8 T 13-10-2018 IPR005543 PASTA domain RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Pfam PF03793 PASTA domain 659 712 6.0E-8 T 13-10-2018 IPR005543 PASTA domain RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Gene3D G3DSA:3.90.1310.10 63 209 9.3E-59 T 13-10-2018 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Gene3D G3DSA:3.30.70.2110 82 164 9.3E-59 T 13-10-2018 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 225 1.8E-23 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 SMART SM00740 658 714 0.01 T 13-10-2018 IPR005543 PASTA domain RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 SMART SM00740 597 657 1.9E-9 T 13-10-2018 IPR005543 PASTA domain RA13_15605 75dfdfec35c8eff0f9b5af8fc05cc845 716 Pfam PF00905 Penicillin binding protein transpeptidase domain 269 577 1.4E-83 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_05185 251204657a8c50c20bba5ef5a12198d5 536 Pfam PF00916 Sulfate permease family 15 379 1.1E-105 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RA13_05185 251204657a8c50c20bba5ef5a12198d5 536 Gene3D G3DSA:3.30.750.24 416 535 1.4E-25 T 13-10-2018 IPR036513 STAS domain superfamily RA13_05185 251204657a8c50c20bba5ef5a12198d5 536 Pfam PF01740 STAS domain 434 531 2.0E-21 T 13-10-2018 IPR002645 STAS domain RA13_05185 251204657a8c50c20bba5ef5a12198d5 536 SUPERFAMILY SSF52091 434 531 1.41E-18 T 13-10-2018 IPR036513 STAS domain superfamily RA13_05185 251204657a8c50c20bba5ef5a12198d5 536 TIGRFAM TIGR00815 sulP: sulfate permease 8 530 1.2E-118 T 13-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 SUPERFAMILY SSF90123 5 316 1.44E-70 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 PRINTS PR01896 ABC transporter family B2 signature 50 67 3.8E-5 T 13-10-2018 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 PRINTS PR01896 ABC transporter family B2 signature 169 184 3.8E-5 T 13-10-2018 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 PRINTS PR01896 ABC transporter family B2 signature 377 391 3.8E-5 T 13-10-2018 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 PRINTS PR01896 ABC transporter family B2 signature 506 524 3.8E-5 T 13-10-2018 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 Pfam PF00664 ABC transporter transmembrane region 17 285 1.9E-41 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 SUPERFAMILY SSF52540 324 565 2.0E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 Gene3D G3DSA:1.20.1560.10 1 313 2.6E-80 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 ProSitePatterns PS00211 ABC transporters family signature. 468 482 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 Pfam PF00005 ABC transporter 347 496 2.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 Gene3D G3DSA:3.40.50.300 324 574 2.8E-85 T 13-10-2018 RA13_19310 36c3bc9cddfbf80136274201bb87461d 577 SMART SM00382 356 540 8.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_20595 55b7d46ac58ec2599fef5bc09bc8ac95 378 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 251 271 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_20595 55b7d46ac58ec2599fef5bc09bc8ac95 378 PIRSF PIRSF000112 8 372 6.0E-112 T 13-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 RA13_20595 55b7d46ac58ec2599fef5bc09bc8ac95 378 Gene3D G3DSA:1.20.1090.10 170 378 2.3E-77 T 13-10-2018 RA13_20595 55b7d46ac58ec2599fef5bc09bc8ac95 378 SUPERFAMILY SSF56796 13 369 2.09E-89 T 13-10-2018 RA13_20595 55b7d46ac58ec2599fef5bc09bc8ac95 378 Pfam PF00465 Iron-containing alcohol dehydrogenase 18 358 5.8E-61 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RA13_20595 55b7d46ac58ec2599fef5bc09bc8ac95 378 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 160 188 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_20595 55b7d46ac58ec2599fef5bc09bc8ac95 378 Gene3D G3DSA:3.40.50.1970 12 169 1.8E-41 T 13-10-2018 RA13_05870 e8ab4a1b7fa538535ae113878b08c7b9 447 SUPERFAMILY SSF52540 2 231 7.07E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05870 e8ab4a1b7fa538535ae113878b08c7b9 447 Gene3D G3DSA:3.40.50.300 1 256 1.0E-66 T 13-10-2018 RA13_05870 e8ab4a1b7fa538535ae113878b08c7b9 447 Pfam PF00005 ABC transporter 17 167 2.4E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05870 e8ab4a1b7fa538535ae113878b08c7b9 447 SMART SM00382 26 286 7.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Gene3D G3DSA:3.40.1110.10 509 629 1.7E-93 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Gene3D G3DSA:3.40.50.1000 479 749 1.7E-93 T 13-10-2018 IPR023214 HAD superfamily RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Gene3D G3DSA:3.30.70.100 73 147 1.7E-22 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 SUPERFAMILY SSF81653 300 396 5.49E-30 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Pfam PF00403 Heavy-metal-associated domain 9 68 1.3E-16 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Pfam PF00403 Heavy-metal-associated domain 77 137 2.2E-16 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 229 799 1.0E-199 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 SUPERFAMILY SSF81665 254 764 8.11E-12 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 210 800 2.0E-185 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 SUPERFAMILY SSF56784 496 797 2.95E-61 T 13-10-2018 IPR036412 HAD-like superfamily RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Gene3D G3DSA:3.30.70.100 1 72 1.5E-23 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 8 70 1.5E-11 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 74 139 2.6E-13 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 ProSitePatterns PS01047 Heavy-metal-associated domain. 79 108 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 500 506 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 269 781 8.7E-92 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 SUPERFAMILY SSF55008 4 71 3.67E-20 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Pfam PF00702 haloacid dehalogenase-like hydrolase 495 711 1.3E-47 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Gene3D G3DSA:2.70.150.20 289 401 2.9E-43 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 SUPERFAMILY SSF55008 73 140 2.36E-20 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00942 Copper-transporting ATPase 1 signature 192 212 1.9E-19 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00942 Copper-transporting ATPase 1 signature 6 31 1.9E-19 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00942 Copper-transporting ATPase 1 signature 212 237 1.9E-19 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00942 Copper-transporting ATPase 1 signature 32 55 1.9E-19 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 Pfam PF00122 E1-E2 ATPase 296 476 3.2E-59 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 622 633 1.7E-27 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 644 654 1.7E-27 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 498 512 1.7E-27 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 720 732 1.7E-27 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 346 360 1.7E-27 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 697 716 1.7E-27 T 13-10-2018 RA13_05665 81b28a08eef6affb5fa84be32412aaae 803 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 40 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 SUPERFAMILY SSF52540 10 215 1.53E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 SUPERFAMILY SSF54980 302 380 1.01E-18 T 13-10-2018 IPR035647 EF-G domain III/V-like RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Pfam PF00009 Elongation factor Tu GTP binding domain 13 191 5.7E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 TIGRFAM TIGR01393 lepA: elongation factor 4 13 606 0.0 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 SUPERFAMILY SSF54980 409 504 1.01E-26 T 13-10-2018 IPR035647 EF-G domain III/V-like RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Pfam PF00679 Elongation factor G C-terminus 409 496 2.3E-25 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 SMART SM00838 408 496 3.7E-4 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 PRINTS PR00315 GTP-binding elongation factor signature 59 67 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 PRINTS PR00315 GTP-binding elongation factor signature 16 29 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 PRINTS PR00315 GTP-binding elongation factor signature 84 94 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 PRINTS PR00315 GTP-binding elongation factor signature 136 145 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 PRINTS PR00315 GTP-binding elongation factor signature 100 111 3.9E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Gene3D G3DSA:2.40.30.10 196 295 1.5E-37 T 13-10-2018 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Gene3D G3DSA:3.30.70.870 296 377 2.3E-36 T 13-10-2018 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Gene3D G3DSA:3.30.70.2570 490 564 2.2E-35 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 184 2.4E-20 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Gene3D G3DSA:3.30.70.3380 378 489 6.2E-44 T 13-10-2018 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Pfam PF06421 GTP-binding protein LepA C-terminus 498 604 8.0E-52 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 SUPERFAMILY SSF50447 176 298 4.57E-34 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Gene3D G3DSA:3.40.50.300 10 195 4.1E-75 T 13-10-2018 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Pfam PF03144 Elongation factor Tu domain 2 215 285 2.1E-13 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 Hamap MF_00071 Elongation factor 4 [lepA]. 1 608 314.66 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 RA13_09550 05ed1e7461253ebc60ca0a7f6c9f9451 611 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 52 67 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site RA13_08370 ed0e8e51e5c895413884f4ccaea14b5b 127 Pfam PF12681 Glyoxalase-like domain 5 127 4.9E-32 T 13-10-2018 IPR025870 Glyoxalase-like domain RA13_08370 ed0e8e51e5c895413884f4ccaea14b5b 127 Gene3D G3DSA:3.10.180.10 8 127 1.1E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_08370 ed0e8e51e5c895413884f4ccaea14b5b 127 SUPERFAMILY SSF54593 5 125 2.55E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_16225 cad2e4c48de39187d125743518045411 231 Gene3D G3DSA:3.40.630.30 14 227 1.1E-54 T 13-10-2018 RA13_16225 cad2e4c48de39187d125743518045411 231 Pfam PF00583 Acetyltransferase (GNAT) family 32 149 7.8E-13 T 13-10-2018 IPR000182 GNAT domain RA13_16225 cad2e4c48de39187d125743518045411 231 SUPERFAMILY SSF55729 18 206 2.8E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_20140 51add7733b998812387ac5a6763d3b76 346 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 3 343 48.031 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_20140 51add7733b998812387ac5a6763d3b76 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 72 161 6.1E-17 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RA13_20140 51add7733b998812387ac5a6763d3b76 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 339 2.8E-35 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RA13_20140 51add7733b998812387ac5a6763d3b76 346 Gene3D G3DSA:3.90.650.10 168 345 1.6E-72 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_20140 51add7733b998812387ac5a6763d3b76 346 SUPERFAMILY SSF55326 4 166 2.39E-49 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20140 51add7733b998812387ac5a6763d3b76 346 Gene3D G3DSA:3.30.1330.10 1 167 9.5E-69 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20140 51add7733b998812387ac5a6763d3b76 346 SUPERFAMILY SSF56042 168 338 5.98E-59 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_20140 51add7733b998812387ac5a6763d3b76 346 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 4 334 4.4E-152 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RA13_05535 5f6ceb7011c0badcc311355322243f90 233 ProDom PD113106 YVBI TRANSMEMBRANE MEMBRANE YEBC YBEC 1 229 1.0E-91 T 13-10-2018 RA13_07425 61f15c632d7ee39cb74263d3f076c8e2 260 Pfam PF00005 ABC transporter 24 162 6.5E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_07425 61f15c632d7ee39cb74263d3f076c8e2 260 Gene3D G3DSA:3.40.50.300 2 229 5.7E-59 T 13-10-2018 RA13_07425 61f15c632d7ee39cb74263d3f076c8e2 260 SMART SM00382 32 212 2.0E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_07425 61f15c632d7ee39cb74263d3f076c8e2 260 SUPERFAMILY SSF52540 4 225 1.36E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07425 61f15c632d7ee39cb74263d3f076c8e2 260 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 SUPERFAMILY SSF52440 2 113 6.26E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 SMART SM00878 336 441 5.2E-53 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 Gene3D G3DSA:3.30.1490.20 131 202 9.9E-156 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 SUPERFAMILY SSF51246 331 441 1.26E-38 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 Gene3D G3DSA:3.40.50.20 1 85 4.0E-35 T 13-10-2018 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 Gene3D G3DSA:3.30.470.20 87 440 9.9E-156 T 13-10-2018 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 110 5.2E-43 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 SUPERFAMILY SSF56059 83 348 1.31E-67 T 13-10-2018 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 9.8E-38 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_12610 9d8a2248c0c084e1a6524a4f2ae64c24 442 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 1.3E-76 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 Gene3D G3DSA:3.30.450.40 128 266 2.5E-10 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 Gene3D G3DSA:3.30.450.40 267 418 9.4E-10 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 SUPERFAMILY SSF55781 128 280 3.27E-13 T 13-10-2018 RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 Pfam PF00990 Diguanylate cyclase, GGDEF domain 425 572 9.5E-44 T 13-10-2018 IPR000160 GGDEF domain RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 420 574 1.2E-41 T 13-10-2018 IPR000160 GGDEF domain RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 SUPERFAMILY SSF55073 429 576 5.1E-40 T 13-10-2018 IPR029787 Nucleotide cyclase RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 Gene3D G3DSA:3.30.70.270 419 575 7.2E-48 T 13-10-2018 RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 SUPERFAMILY SSF55781 250 411 6.32E-10 T 13-10-2018 RA13_07925 e1dd34f7789e2cc272a13a9424e79045 581 SMART SM00267 413 576 6.4E-58 T 13-10-2018 IPR000160 GGDEF domain RA13_02265 38db8db06200c3140964411704e256e5 159 Gene3D G3DSA:3.40.1280.10 1 159 1.4E-70 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RA13_02265 38db8db06200c3140964411704e256e5 159 PIRSF PIRSF004505 1 159 7.3E-54 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RA13_02265 38db8db06200c3140964411704e256e5 159 SUPERFAMILY SSF75217 2 157 2.88E-64 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RA13_02265 38db8db06200c3140964411704e256e5 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 30.813 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RA13_02265 38db8db06200c3140964411704e256e5 159 Pfam PF02590 Predicted SPOUT methyltransferase 2 158 6.6E-60 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RA13_02265 38db8db06200c3140964411704e256e5 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 159 2.2E-80 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RA13_10160 5498eecada713943820c151a24b03c29 450 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 1.8E-82 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_10160 5498eecada713943820c151a24b03c29 450 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_10160 5498eecada713943820c151a24b03c29 450 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.4E-47 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_10160 5498eecada713943820c151a24b03c29 450 Gene3D G3DSA:3.30.470.130 1 448 6.7E-200 T 13-10-2018 RA13_10160 5498eecada713943820c151a24b03c29 450 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RA13_10160 5498eecada713943820c151a24b03c29 450 SUPERFAMILY SSF56059 83 349 1.03E-72 T 13-10-2018 RA13_10160 5498eecada713943820c151a24b03c29 450 SUPERFAMILY SSF51246 332 445 6.8E-47 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RA13_10160 5498eecada713943820c151a24b03c29 450 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 1.7E-43 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_10160 5498eecada713943820c151a24b03c29 450 SMART SM00878 337 443 7.9E-70 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_10160 5498eecada713943820c151a24b03c29 450 SUPERFAMILY SSF52440 1 113 8.63E-51 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_10160 5498eecada713943820c151a24b03c29 450 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 449 1.2E-247 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 78 1.5E-35 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 Gene3D G3DSA:2.40.50.140 6 86 1.4E-35 T 13-10-2018 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 SUPERFAMILY SSF50249 7 84 1.2E-31 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_01005 060aa892c313023b559ac7dcaacfad90 87 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 7 82 24.27 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 78 1.0E-35 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 ProSitePatterns PS00056 Ribosomal protein S17 signature. 58 70 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 PRINTS PR00973 Ribosomal protein S17 family signature 68 75 1.1E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 PRINTS PR00973 Ribosomal protein S17 family signature 26 49 1.1E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 PRINTS PR00973 Ribosomal protein S17 family signature 58 68 1.1E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01005 060aa892c313023b559ac7dcaacfad90 87 Pfam PF00366 Ribosomal protein S17 12 79 1.4E-32 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 SMART SM00028 289 322 3.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 SMART SM00028 209 242 56.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 SMART SM00028 327 360 21.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 SMART SM00028 406 439 140.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 SUPERFAMILY SSF48452 167 373 1.83E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 Gene3D G3DSA:1.25.40.1000 81 185 2.4E-8 T 13-10-2018 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 SUPERFAMILY SSF47413 25 82 7.32E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 SMART SM00530 30 84 7.0E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 Gene3D G3DSA:1.10.260.40 22 80 6.2E-6 T 13-10-2018 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 Gene3D G3DSA:1.25.40.10 189 440 6.7E-34 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_02755 0553eede777eeb1c9c7521f783550e17 443 Pfam PF01381 Helix-turn-helix 35 82 2.2E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_13355 635a054b73c8606e394a504903c48499 221 Gene3D G3DSA:3.40.50.300 1 221 8.1E-62 T 13-10-2018 RA13_13355 635a054b73c8606e394a504903c48499 221 SMART SM00382 32 219 3.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_13355 635a054b73c8606e394a504903c48499 221 Pfam PF00005 ABC transporter 23 171 1.5E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_13355 635a054b73c8606e394a504903c48499 221 SUPERFAMILY SSF52540 3 220 3.38E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15905 550f0f82172d0d665cfd4caf718f168e 222 Pfam PF10368 Putative cell-wall binding lipoprotein 18 216 2.4E-69 T 13-10-2018 IPR019454 Putative cell-wall binding lipoprotein YkyA-like RA13_15905 550f0f82172d0d665cfd4caf718f168e 222 SUPERFAMILY SSF140423 25 214 7.19E-56 T 13-10-2018 IPR036785 YkyA-like superfamily RA13_15905 550f0f82172d0d665cfd4caf718f168e 222 Gene3D G3DSA:1.20.120.570 19 213 5.0E-50 T 13-10-2018 IPR036785 YkyA-like superfamily RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 377 8.7E-139 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 Gene3D G3DSA:3.70.10.10 145 375 3.3E-143 T 13-10-2018 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 SUPERFAMILY SSF55979 254 377 5.65E-30 T 13-10-2018 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 Pfam PF02767 DNA polymerase III beta subunit, central domain 136 251 2.8E-41 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 PIRSF PIRSF000804 1 378 8.9E-117 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 SUPERFAMILY SSF55979 134 251 1.2E-27 T 13-10-2018 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 Gene3D G3DSA:3.10.150.10 1 250 3.3E-143 T 13-10-2018 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 127 4.7E-42 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 254 376 2.0E-39 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 SUPERFAMILY SSF55979 1 127 1.72E-23 T 13-10-2018 RA13_01800 fba746b8e7043d8d60e2714f08a0bb3e 378 SMART SM00480 17 373 2.5E-181 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RA13_12360 29af1e4566b068479cfb800155d39391 240 Pfam PF12833 Helix-turn-helix domain 154 232 7.0E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_12360 29af1e4566b068479cfb800155d39391 240 SMART SM00342 148 231 4.9E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_12360 29af1e4566b068479cfb800155d39391 240 SUPERFAMILY SSF51182 19 103 1.91E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_12360 29af1e4566b068479cfb800155d39391 240 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 185 227 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RA13_12360 29af1e4566b068479cfb800155d39391 240 SUPERFAMILY SSF46689 138 181 5.82E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_12360 29af1e4566b068479cfb800155d39391 240 Gene3D G3DSA:1.10.10.60 182 236 3.2E-15 T 13-10-2018 RA13_12360 29af1e4566b068479cfb800155d39391 240 SUPERFAMILY SSF46689 184 234 3.94E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_12360 29af1e4566b068479cfb800155d39391 240 Pfam PF07883 Cupin domain 20 76 1.3E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RA13_12360 29af1e4566b068479cfb800155d39391 240 Gene3D G3DSA:2.60.120.10 3 81 2.0E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_12360 29af1e4566b068479cfb800155d39391 240 Gene3D G3DSA:1.10.10.60 121 181 7.9E-13 T 13-10-2018 RA13_00720 6d5f14e212aa9450111eb349bab48e4b 283 SUPERFAMILY SSF46689 5 78 1.11E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_00720 6d5f14e212aa9450111eb349bab48e4b 283 Pfam PF01418 Helix-turn-helix domain, rpiR family 4 77 5.6E-27 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RA13_00720 6d5f14e212aa9450111eb349bab48e4b 283 SUPERFAMILY SSF53697 95 279 1.39E-39 T 13-10-2018 RA13_00720 6d5f14e212aa9450111eb349bab48e4b 283 Gene3D G3DSA:1.10.10.10 1 83 3.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00720 6d5f14e212aa9450111eb349bab48e4b 283 Gene3D G3DSA:3.40.50.10490 95 282 4.4E-49 T 13-10-2018 RA13_00720 6d5f14e212aa9450111eb349bab48e4b 283 Pfam PF01380 SIS domain 126 256 2.1E-22 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 SUPERFAMILY SSF55186 67 243 5.23E-66 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Gene3D G3DSA:3.10.20.30 2 66 8.9E-27 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 SMART SM00863 172 221 9.4E-25 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Pfam PF02824 TGS domain 5 64 1.7E-14 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Gene3D G3DSA:3.30.980.10 72 224 1.8E-66 T 13-10-2018 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 75 640 3.0E-244 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Gene3D G3DSA:3.40.50.800 541 643 3.0E-34 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 69 643 35.307 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 221 5.5E-16 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 SUPERFAMILY SSF52954 535 638 3.02E-31 T 13-10-2018 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Gene3D G3DSA:3.30.930.10 227 540 3.1E-114 T 13-10-2018 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Gene3D G3DSA:3.30.54.20 133 189 1.8E-66 T 13-10-2018 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 328 536 6.6E-35 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 SUPERFAMILY SSF55681 245 534 3.78E-96 T 13-10-2018 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 Pfam PF03129 Anticodon binding domain 549 636 2.9E-25 T 13-10-2018 IPR004154 Anticodon-binding RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 472 500 3.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 333 361 3.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 366 389 3.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 515 528 3.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 542 554 3.1E-47 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RA13_08220 4ea2bf6d75ae8f5ec7a4a1bd9b53da54 643 SUPERFAMILY SSF81271 5 64 1.13E-16 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RA13_14060 8ff41b0ecb606f88e1c75995bd10d30e 131 ProDom PD015812 YOPD YWLA YOAG 11 130 5.0E-33 T 13-10-2018 IPR031374 Uncharacterised protein family UPF0715 RA13_14060 8ff41b0ecb606f88e1c75995bd10d30e 131 Pfam PF17094 Uncharacterised protein family (UPF0715) 11 129 3.5E-42 T 13-10-2018 IPR031374 Uncharacterised protein family UPF0715 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 SUPERFAMILY SSF52743 199 518 8.77E-69 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 SUPERFAMILY SSF49899 637 790 3.8E-10 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 275 285 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Gene3D G3DSA:2.60.40.10 1158 1240 5.9E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Gene3D G3DSA:2.60.40.10 1243 1324 7.9E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 PIRSF PIRSF015477 1 1435 0.0 T 13-10-2018 IPR012103 Peptidase S8A, bacillopeptidase F RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Gene3D G3DSA:2.60.40.1120 913 991 1.0E-11 T 13-10-2018 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Pfam PF05547 Immune inhibitor A peptidase M6 696 788 7.9E-13 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 SUPERFAMILY SSF49464 912 1005 1.44E-13 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Gene3D G3DSA:3.40.50.200 191 516 1.6E-77 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Pfam PF05922 Peptidase inhibitor I9 99 177 6.6E-8 T 13-10-2018 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 451 461 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Gene3D G3DSA:2.60.40.1120 832 908 1.7E-11 T 13-10-2018 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Pfam PF13715 CarboxypepD_reg-like domain 913 986 1.0E-11 T 13-10-2018 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Pfam PF13715 CarboxypepD_reg-like domain 840 907 2.1E-9 T 13-10-2018 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 SUPERFAMILY SSF49464 836 906 4.32E-9 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 Pfam PF00082 Subtilase family 219 505 1.9E-50 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 PRINTS PR00723 Subtilisin serine protease family (S8) signature 219 238 2.5E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 PRINTS PR00723 Subtilisin serine protease family (S8) signature 271 284 2.5E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_15535 6341cda5b26ee44015867e6b5169683b 1435 PRINTS PR00723 Subtilisin serine protease family (S8) signature 450 466 2.5E-14 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_01655 bcbe91ac289492aa98f3c9ffbfa3e427 161 SUPERFAMILY SSF53927 2 153 8.88E-53 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RA13_01655 bcbe91ac289492aa98f3c9ffbfa3e427 161 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 8 149 47.04 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RA13_01655 bcbe91ac289492aa98f3c9ffbfa3e427 161 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RA13_01655 bcbe91ac289492aa98f3c9ffbfa3e427 161 Pfam PF14437 MafB19-like deaminase 4 149 6.0E-38 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RA13_01655 bcbe91ac289492aa98f3c9ffbfa3e427 161 Gene3D G3DSA:3.40.140.10 1 161 8.7E-61 T 13-10-2018 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 SUPERFAMILY SSF51604 139 428 1.98E-130 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 Hamap MF_00318 Enolase [eno]. 2 413 45.99 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 SMART SM01192 139 427 1.7E-227 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 6.3E-223 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 ProSitePatterns PS00164 Enolase signature. 336 349 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 SMART SM01193 4 134 1.3E-100 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 426 2.3E-144 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 Gene3D G3DSA:3.30.390.10 3 127 4.2E-60 T 13-10-2018 IPR029017 Enolase-like, N-terminal RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 SUPERFAMILY SSF54826 3 138 4.57E-61 T 13-10-2018 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 Pfam PF03952 Enolase, N-terminal domain 4 134 9.4E-63 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 PRINTS PR00148 Enolase signature 313 324 1.1E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 PRINTS PR00148 Enolase signature 107 123 1.1E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 PRINTS PR00148 Enolase signature 161 174 1.1E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 PRINTS PR00148 Enolase signature 336 350 1.1E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 PRINTS PR00148 Enolase signature 37 51 1.1E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 PRINTS PR00148 Enolase signature 365 382 1.1E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 PIRSF PIRSF001400 1 427 2.6E-197 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05470 7cd0c554c5690c11029f0e116ed3b8ce 430 Gene3D G3DSA:3.20.20.120 128 430 3.5E-139 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_20690 8e82d7cbb23b94d733aec0161c843ac5 492 Gene3D G3DSA:1.20.1730.10 5 492 3.0E-27 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RA13_20690 8e82d7cbb23b94d733aec0161c843ac5 492 Pfam PF00474 Sodium:solute symporter family 35 428 1.8E-17 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_08935 2a4d01235486abc036520e52a342aec7 87 PRINTS PR01853 Bacterial YajC preprotein translocase signature 5 25 4.7E-15 T 13-10-2018 IPR003849 Preprotein translocase YajC RA13_08935 2a4d01235486abc036520e52a342aec7 87 PRINTS PR01853 Bacterial YajC preprotein translocase signature 43 61 4.7E-15 T 13-10-2018 IPR003849 Preprotein translocase YajC RA13_08935 2a4d01235486abc036520e52a342aec7 87 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 4 84 1.7E-33 T 13-10-2018 IPR003849 Preprotein translocase YajC RA13_08935 2a4d01235486abc036520e52a342aec7 87 SMART SM01323 3 85 3.5E-42 T 13-10-2018 IPR003849 Preprotein translocase YajC RA13_08935 2a4d01235486abc036520e52a342aec7 87 Pfam PF02699 Preprotein translocase subunit 7 82 2.2E-31 T 13-10-2018 IPR003849 Preprotein translocase YajC RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 2 624 44.337 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 Pfam PF02779 Transketolase, pyrimidine binding domain 316 477 2.0E-38 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 SMART SM00861 316 481 1.2E-62 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 Pfam PF02780 Transketolase, C-terminal domain 493 613 1.6E-32 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 ProSitePatterns PS00801 Transketolase signature 1. 28 47 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 SUPERFAMILY SSF52518 315 503 6.11E-54 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 Gene3D G3DSA:3.40.50.970 313 489 1.9E-65 T 13-10-2018 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 ProSitePatterns PS00802 Transketolase signature 2. 422 438 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 Gene3D G3DSA:3.40.50.920 493 626 3.5E-38 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 5 278 2.1E-115 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 SUPERFAMILY SSF52922 489 619 4.45E-32 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 4 620 0.0 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RA13_10195 faa769f13bd0d82326b8768b9e71aacc 633 SUPERFAMILY SSF52518 6 378 3.14E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_10640 47f09d69f0b9de131665774244b3cedb 141 ProDom PD086170 SPORULATION AB V STAGE MEMBRANE SPOVAB TRANSMEMBRANE 27 138 2.0E-51 T 13-10-2018 IPR020144 Stage V sporulation protein AB RA13_10640 47f09d69f0b9de131665774244b3cedb 141 Pfam PF13782 Stage V sporulation protein AB 27 135 3.5E-33 T 13-10-2018 IPR020144 Stage V sporulation protein AB RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 15 315 80.501 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 Gene3D G3DSA:3.40.50.1370 17 310 1.1E-124 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 SUPERFAMILY SSF53671 12 314 1.57E-112 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 Gene3D G3DSA:3.40.50.1370 142 301 1.1E-124 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 57 76 3.5E-28 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 3.5E-28 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 279 302 3.5E-28 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 139 150 3.5E-28 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 57 64 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 16 152 2.0E-54 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 158 312 5.3E-58 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 16 314 2.5E-130 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00102 Ornithine carbamoyltransferase signature 293 304 1.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00102 Ornithine carbamoyltransferase signature 128 142 1.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00102 Ornithine carbamoyltransferase signature 55 69 1.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00102 Ornithine carbamoyltransferase signature 231 241 1.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RA13_17690 8afbd2fb30f26b81f0f67de9cc116b97 317 PRINTS PR00102 Ornithine carbamoyltransferase signature 88 101 1.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 Pfam PF01820 D-ala D-ala ligase N-terminus 5 124 1.8E-31 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 347 5.4E-122 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 Gene3D G3DSA:3.30.470.20 124 350 9.5E-83 T 13-10-2018 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 Gene3D G3DSA:3.40.50.20 1 123 2.3E-36 T 13-10-2018 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 PIRSF PIRSF039102 1 356 1.4E-117 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 348 41.675 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 Pfam PF07478 D-ala D-ala ligase C-terminus 142 345 1.5E-84 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 Gene3D G3DSA:3.30.1490.20 150 222 9.5E-83 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 290 318 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 SUPERFAMILY SSF56059 135 352 8.84E-63 T 13-10-2018 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 102 113 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_21080 5a91ba4f38f1ff626eeec55051d67552 361 SUPERFAMILY SSF52440 2 134 1.63E-34 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_06490 7e04cf50e4984031aae25996ec9fe43f 286 Pfam PF00756 Putative esterase 31 261 1.5E-20 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RA13_06490 7e04cf50e4984031aae25996ec9fe43f 286 SUPERFAMILY SSF53474 16 278 1.77E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_06490 7e04cf50e4984031aae25996ec9fe43f 286 Gene3D G3DSA:3.40.50.1820 15 281 2.8E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_02395 8573f93348e74cfd14d7e85a77e9f651 450 Pfam PF00324 Amino acid permease 14 448 2.3E-103 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_02395 8573f93348e74cfd14d7e85a77e9f651 450 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RA13_02395 8573f93348e74cfd14d7e85a77e9f651 450 Gene3D G3DSA:1.20.1740.10 5 450 1.5E-61 T 13-10-2018 RA13_02395 8573f93348e74cfd14d7e85a77e9f651 450 PIRSF PIRSF006060 1 449 1.9E-66 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_12950 e5fcda700aa4aff8f4be506501cdd0cb 181 Gene3D G3DSA:1.25.10.10 2 179 4.8E-6 T 13-10-2018 IPR011989 Armadillo-like helical RA13_12950 e5fcda700aa4aff8f4be506501cdd0cb 181 SUPERFAMILY SSF48371 4 163 9.0E-11 T 13-10-2018 IPR016024 Armadillo-type fold RA13_14375 b98094ae0aa95acaca954277de003f85 416 Pfam PF00817 impB/mucB/samB family 15 160 1.3E-24 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_14375 b98094ae0aa95acaca954277de003f85 416 Gene3D G3DSA:1.10.150.20 188 240 2.6E-15 T 13-10-2018 RA13_14375 b98094ae0aa95acaca954277de003f85 416 Gene3D G3DSA:3.30.70.270 12 163 1.1E-25 T 13-10-2018 RA13_14375 b98094ae0aa95acaca954277de003f85 416 SUPERFAMILY SSF56672 11 245 2.94E-50 T 13-10-2018 RA13_14375 b98094ae0aa95acaca954277de003f85 416 Pfam PF11798 IMS family HHH motif 176 208 2.8E-8 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RA13_14375 b98094ae0aa95acaca954277de003f85 416 SUPERFAMILY SSF100879 255 354 2.35E-16 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_14375 b98094ae0aa95acaca954277de003f85 416 Gene3D G3DSA:2.30.40.20 29 83 1.1E-25 T 13-10-2018 RA13_14375 b98094ae0aa95acaca954277de003f85 416 Gene3D G3DSA:3.30.1490.100 255 363 6.9E-15 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_14375 b98094ae0aa95acaca954277de003f85 416 Pfam PF11799 impB/mucB/samB family C-terminal domain 255 362 8.1E-18 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_04650 e94778378fcdce0ed01441eff96711db 880 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 736 863 1.5E-12 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RA13_04650 e94778378fcdce0ed01441eff96711db 880 Gene3D G3DSA:1.10.530.10 732 867 1.1E-7 T 13-10-2018 RA13_04650 e94778378fcdce0ed01441eff96711db 880 Pfam PF05036 Sporulation related domain 235 306 3.9E-6 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 RA13_04650 e94778378fcdce0ed01441eff96711db 880 Pfam PF08239 Bacterial SH3 domain 639 692 1.9E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_04650 e94778378fcdce0ed01441eff96711db 880 Gene3D G3DSA:2.30.30.40 623 695 4.8E-9 T 13-10-2018 RA13_04650 e94778378fcdce0ed01441eff96711db 880 SMART SM00287 630 700 6.4E-8 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_04650 e94778378fcdce0ed01441eff96711db 880 SMART SM00047 723 875 5.5E-58 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RA13_21240 b925dceb6daf70b148d1fcfabccb9058 283 SMART SM00267 121 283 2.7E-24 T 13-10-2018 IPR000160 GGDEF domain RA13_21240 b925dceb6daf70b148d1fcfabccb9058 283 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 133 278 5.1E-17 T 13-10-2018 IPR000160 GGDEF domain RA13_21240 b925dceb6daf70b148d1fcfabccb9058 283 Pfam PF00990 Diguanylate cyclase, GGDEF domain 133 276 4.8E-27 T 13-10-2018 IPR000160 GGDEF domain RA13_21240 b925dceb6daf70b148d1fcfabccb9058 283 Gene3D G3DSA:3.30.70.270 134 282 1.5E-21 T 13-10-2018 RA13_21240 b925dceb6daf70b148d1fcfabccb9058 283 SUPERFAMILY SSF55073 138 275 4.24E-18 T 13-10-2018 IPR029787 Nucleotide cyclase RA13_11495 d1fcb49c826c420b12f704448eb73453 382 Pfam PF00534 Glycosyl transferases group 1 187 350 8.2E-18 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_11495 d1fcb49c826c420b12f704448eb73453 382 Gene3D G3DSA:3.40.50.2000 189 353 6.3E-35 T 13-10-2018 RA13_11495 d1fcb49c826c420b12f704448eb73453 382 Hamap MF_01280 Processive diacylglycerol beta-glucosyltransferase [ugtP]. 1 382 55.461 T 13-10-2018 IPR023589 Processive diacylglycerol beta-glucosyltransferase GO:0047228 KEGG: 00561+2.4.1.315|MetaCyc: PWY-7817 RA13_11495 d1fcb49c826c420b12f704448eb73453 382 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 18 179 7.1E-47 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 RA13_11495 d1fcb49c826c420b12f704448eb73453 382 SUPERFAMILY SSF53756 5 366 1.8E-42 T 13-10-2018 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 Gene3D G3DSA:3.30.499.10 324 472 2.4E-50 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 82 95 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 195 208 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 209 222 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 133 148 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 286 300 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 119 132 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 108 116 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 399 412 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 PRINTS PR00415 Aconitase family signature 343 354 2.2E-46 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 SUPERFAMILY SSF53732 2 465 2.49E-166 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 Pfam PF00330 Aconitase family (aconitate hydratase) 8 457 1.9E-155 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 466 59.315 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 2 464 2.5E-268 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RA13_08600 4161f6a819c6d683355bc9cf98dfbe81 472 Gene3D G3DSA:3.30.499.20 5 286 4.3E-102 T 13-10-2018 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 313 324 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 Gene3D G3DSA:3.40.309.10 289 479 4.4E-190 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 TIGRFAM TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase 5 515 3.9E-288 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 Gene3D G3DSA:3.40.605.10 39 502 4.4E-190 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 285 292 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 Pfam PF00171 Aldehyde dehydrogenase family 50 511 1.6E-154 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 Hamap MF_00733 1-pyrroline-5-carboxylate dehydrogenase [rocA]. 1 515 67.724 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 RA13_21850 b3a0467b5d1ecb9c7883021d460140f3 515 SUPERFAMILY SSF53720 4 511 7.85E-156 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_08215 49113e53c67e9ae37c6e576b622104f9 276 TIGRFAM TIGR02834 spo_ytxC: putative sporulation protein YtxC 3 262 2.1E-80 T 13-10-2018 IPR014199 Sporulation protein YtxC RA13_08215 49113e53c67e9ae37c6e576b622104f9 276 Pfam PF08812 YtxC-like family 51 261 4.3E-58 T 13-10-2018 IPR014199 Sporulation protein YtxC RA13_08215 49113e53c67e9ae37c6e576b622104f9 276 PIRSF PIRSF012563 1 275 1.2E-94 T 13-10-2018 IPR014199 Sporulation protein YtxC RA13_14620 41fcd6022a53f8497049867b3bc41767 288 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 282 1.8E-126 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RA13_14620 41fcd6022a53f8497049867b3bc41767 288 Gene3D G3DSA:3.30.70.250 120 188 1.0E-99 T 13-10-2018 RA13_14620 41fcd6022a53f8497049867b3bc41767 288 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 5 287 1.5E-19 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RA13_14620 41fcd6022a53f8497049867b3bc41767 288 PIRSF PIRSF000446 1 288 2.3E-113 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RA13_14620 41fcd6022a53f8497049867b3bc41767 288 SUPERFAMILY SSF55048 121 177 4.71E-13 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RA13_14620 41fcd6022a53f8497049867b3bc41767 288 Pfam PF00698 Acyl transferase domain 3 235 1.3E-33 T 13-10-2018 IPR014043 Acyl transferase RA13_14620 41fcd6022a53f8497049867b3bc41767 288 Gene3D G3DSA:3.40.366.10 4 276 1.0E-99 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RA13_14620 41fcd6022a53f8497049867b3bc41767 288 SUPERFAMILY SSF52151 1 283 9.94E-63 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RA13_21060 8553089cf558788a621ee7a929181ef6 159 Pfam PF03703 Bacterial PH domain 74 148 1.9E-17 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RA13_05130 a5560c60fda94ec1a7484a596b5b5b2f 317 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 7 315 1.4E-130 T 13-10-2018 IPR010119 Gluconeogenesis factor RA13_05130 a5560c60fda94ec1a7484a596b5b5b2f 317 Pfam PF01933 Uncharacterised protein family UPF0052 7 292 2.3E-107 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 RA13_05130 a5560c60fda94ec1a7484a596b5b5b2f 317 Hamap MF_00973 Gluconeogenesis factor. 3 317 36.564 T 13-10-2018 IPR010119 Gluconeogenesis factor RA13_05130 a5560c60fda94ec1a7484a596b5b5b2f 317 SUPERFAMILY SSF142338 4 312 1.7E-109 T 13-10-2018 RA13_05130 a5560c60fda94ec1a7484a596b5b5b2f 317 Gene3D G3DSA:3.40.50.12300 2 316 5.6E-131 T 13-10-2018 IPR038136 Gluconeogenesis factor superfamily RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 17 99 1.0E-33 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 Pfam PF00120 Glutamine synthetase, catalytic domain 106 440 1.5E-141 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 234 249 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 361 373 - T 13-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 70 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 SUPERFAMILY SSF55931 105 442 3.24E-129 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 Gene3D G3DSA:3.10.20.70 2 107 2.2E-46 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 Gene3D G3DSA:3.30.590.10 108 444 3.2E-149 T 13-10-2018 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 441 6.0E-192 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 SUPERFAMILY SSF54368 5 104 6.8E-36 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RA13_13485 d7fd3a8382d06d0b57aabba57e76610a 444 SMART SM01230 105 354 2.4E-138 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 276 4.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 Gene3D G3DSA:1.10.287.130 200 278 1.9E-17 T 13-10-2018 RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 Gene3D G3DSA:3.30.565.10 279 427 6.4E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 SMART SM00388 212 279 1.9E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 SMART SM00387 320 427 2.0E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 SUPERFAMILY SSF55874 270 425 2.75E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 2.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 424 2.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 405 2.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 425 8.8E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_06765 dd0e509dfab5fd2cbe4c9d184a5ca0db 429 SUPERFAMILY SSF47384 207 277 8.83E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_17880 30b8d2cdaf6ab6042d292f3252bd72c3 342 SUPERFAMILY SSF55347 130 304 7.52E-32 T 13-10-2018 RA13_17880 30b8d2cdaf6ab6042d292f3252bd72c3 342 SUPERFAMILY SSF51735 3 153 7.36E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_17880 30b8d2cdaf6ab6042d292f3252bd72c3 342 Gene3D G3DSA:3.40.50.720 5 306 8.5E-104 T 13-10-2018 RA13_17880 30b8d2cdaf6ab6042d292f3252bd72c3 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 125 2.4E-33 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RA13_17880 30b8d2cdaf6ab6042d292f3252bd72c3 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 244 1.7E-15 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RA13_17880 30b8d2cdaf6ab6042d292f3252bd72c3 342 Gene3D G3DSA:3.30.360.10 126 319 8.5E-104 T 13-10-2018 RA13_17880 30b8d2cdaf6ab6042d292f3252bd72c3 342 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 5 332 3.8E-107 T 13-10-2018 IPR030827 Inositol 2-dehydrogenase RA13_11035 6347f612caabc48ab9cd353029929688 190 Gene3D G3DSA:1.10.286.10 1 54 7.6E-26 T 13-10-2018 RA13_11035 6347f612caabc48ab9cd353029929688 190 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 65 81 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RA13_11035 6347f612caabc48ab9cd353029929688 190 Pfam PF01227 GTP cyclohydrolase I 9 186 9.0E-82 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RA13_11035 6347f612caabc48ab9cd353029929688 190 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 5 187 42.862 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RA13_11035 6347f612caabc48ab9cd353029929688 190 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 114 124 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RA13_11035 6347f612caabc48ab9cd353029929688 190 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 9 188 2.1E-85 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RA13_11035 6347f612caabc48ab9cd353029929688 190 Gene3D G3DSA:3.30.1130.10 55 189 2.4E-60 T 13-10-2018 RA13_11035 6347f612caabc48ab9cd353029929688 190 SUPERFAMILY SSF55620 3 189 4.89E-80 T 13-10-2018 RA13_02495 367ed4ca1657bcaa653e653ae8775306 337 Pfam PF07883 Cupin domain 55 109 1.1E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RA13_02495 367ed4ca1657bcaa653e653ae8775306 337 Pfam PF07883 Cupin domain 226 281 1.6E-15 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RA13_02495 367ed4ca1657bcaa653e653ae8775306 337 Gene3D G3DSA:2.60.120.10 23 192 1.2E-149 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_02495 367ed4ca1657bcaa653e653ae8775306 337 Gene3D G3DSA:2.60.120.10 9 332 1.2E-149 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_02495 367ed4ca1657bcaa653e653ae8775306 337 SUPERFAMILY SSF51182 8 330 7.67E-54 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_07665 02a54e19eed3de7c312805104ab032c3 422 Gene3D G3DSA:3.50.50.60 7 408 1.1E-123 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_07665 02a54e19eed3de7c312805104ab032c3 422 SUPERFAMILY SSF160996 194 360 6.28E-47 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 Gene3D G3DSA:1.10.8.260 278 342 1.1E-123 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily RA13_07665 02a54e19eed3de7c312805104ab032c3 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 169 1.1E-8 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.1E-8 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 411 2.5E-146 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RA13_07665 02a54e19eed3de7c312805104ab032c3 422 Gene3D G3DSA:2.40.30.10 193 359 1.1E-123 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 157 175 4.5E-7 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.5E-7 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 4.5E-7 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 Pfam PF03486 HI0933-like protein 4 412 4.2E-155 T 13-10-2018 RA13_07665 02a54e19eed3de7c312805104ab032c3 422 SUPERFAMILY SSF51905 2 415 1.23E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.30.559.10 1331 1701 1.4E-136 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF52777 3 238 2.67E-15 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF52777 1509 1758 1.01E-54 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00501 AMP-binding enzyme 1790 2184 7.6E-100 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00501 AMP-binding enzyme 268 674 1.6E-109 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00668 Condensation domain 858 1301 1.6E-103 T 13-10-2018 IPR001242 Condensation domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00668 Condensation domain 1326 1769 1.8E-117 T 13-10-2018 IPR001242 Condensation domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00668 Condensation domain 3 248 1.2E-13 T 13-10-2018 IPR001242 Condensation domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF52777 1058 1297 1.22E-38 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF47336 2283 2356 4.97E-17 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12445 d97be1d54b1eef22442d48399336fede 2615 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 289 698 2.2E-143 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1811 2208 2.5E-140 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:1.20.890.40 2476 2528 3.9E-58 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1164 1314 9.2E-47 T 13-10-2018 IPR010060 Non-ribosomal peptide synthase RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.30.559.30 1027 1296 8.7E-69 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00975 Thioesterase domain 2379 2480 1.8E-21 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.30.559.10 847 1026 1.3E-58 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF52777 862 1036 2.89E-36 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:1.10.1200.10 2280 2364 2.9E-21 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:1.10.1200.10 769 846 2.6E-21 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.30.300.30 2178 2279 1.9E-31 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2315 2330 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.30.559.30 1510 1766 1.4E-136 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF56801 1748 2302 1.2E-151 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF53474 2361 2583 3.45E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00550 Phosphopantetheine attachment site 783 843 1.3E-9 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF00550 Phosphopantetheine attachment site 2293 2356 7.9E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SMART SM00824 Thioesterase 2381 2538 4.8E-4 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF56801 230 792 2.49E-163 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.30.559.30 2 240 1.2E-17 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF47336 772 844 1.57E-17 T 13-10-2018 IPR036736 ACP-like superfamily RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SMART SM00823 Phosphopantetheine attachment site 780 848 0.21 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SMART SM00823 Phosphopantetheine attachment site 2291 2360 0.022 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 ProSitePatterns PS00012 Phosphopantetheine attachment site. 804 819 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.30.300.30 669 768 5.0E-30 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.40.50.12780 257 666 4.7E-147 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 ProSitePatterns PS00455 Putative AMP-binding domain signature. 407 418 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12445 d97be1d54b1eef22442d48399336fede 2615 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1929 1940 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF13193 AMP-binding enzyme C-terminal domain 682 754 3.8E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Pfam PF13193 AMP-binding enzyme C-terminal domain 2192 2264 2.1E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.40.50.12780 1775 2177 2.1E-132 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 SUPERFAMILY SSF52777 1323 1524 7.78E-43 T 13-10-2018 RA13_12445 d97be1d54b1eef22442d48399336fede 2615 Gene3D G3DSA:3.40.50.1820 2372 2583 3.9E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_19160 518cd03c3091327b77d204e01640ea33 317 SUPERFAMILY SSF53448 5 253 3.38E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19160 518cd03c3091327b77d204e01640ea33 317 Gene3D G3DSA:3.90.550.10 2 194 6.7E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19160 518cd03c3091327b77d204e01640ea33 317 Pfam PF00535 Glycosyl transferase family 2 7 169 6.0E-34 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 474 38.895 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 SUPERFAMILY SSF55931 4 294 6.41E-121 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 142 156 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 Pfam PF02637 GatB domain 326 472 1.7E-55 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 2 471 9.9E-182 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 Pfam PF02934 GatB/GatE catalytic domain 5 285 1.6E-111 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 SMART SM00845 326 473 2.2E-78 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 Gene3D G3DSA:1.10.150.380 298 411 3.2E-39 T 13-10-2018 RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 Gene3D G3DSA:1.10.10.410 413 476 1.1E-25 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RA13_20040 75adbcd0a9bb26b846f1c160748ecc20 476 SUPERFAMILY SSF89095 295 400 3.05E-36 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 198 281 4.7E-36 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 262 288 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 SUPERFAMILY SSF52402 3 192 3.42E-50 T 13-10-2018 RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 Gene3D G3DSA:3.40.50.620 2 193 4.5E-58 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 PIRSF PIRSF000089 1 322 6.5E-116 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 Pfam PF01012 Electron transfer flavoprotein domain 7 179 3.5E-45 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 Gene3D G3DSA:3.40.50.1220 194 324 3.0E-57 T 13-10-2018 RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 SUPERFAMILY SSF52467 198 317 4.65E-49 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RA13_08465 1d21e93a6c046d7e7a4c4b884e8c957c 325 SMART SM00893 5 195 1.1E-46 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 Gene3D G3DSA:3.40.190.10 164 258 6.7E-24 T 13-10-2018 RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 Gene3D G3DSA:3.40.190.10 93 163 6.7E-24 T 13-10-2018 RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 SUPERFAMILY SSF46785 1 87 4.72E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.6E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 SUPERFAMILY SSF53850 87 286 6.4E-28 T 13-10-2018 RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 Gene3D G3DSA:1.10.10.10 1 92 1.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 Pfam PF03466 LysR substrate binding domain 87 287 5.3E-33 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.1E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.1E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_18635 b95b8403ab12c8ba769d28ba8b886309 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.1E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03480 67117984f42bb7cb926c8a01660493df 317 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 311 1.8E-117 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 RA13_03480 67117984f42bb7cb926c8a01660493df 317 Pfam PF00296 Luciferase-like monooxygenase 15 304 5.4E-41 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RA13_03480 67117984f42bb7cb926c8a01660493df 317 Gene3D G3DSA:3.20.20.30 1 316 1.1E-94 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_03480 67117984f42bb7cb926c8a01660493df 317 SUPERFAMILY SSF51679 3 311 8.6E-71 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_07350 3fb657fb8f1cbffc79613b3c36794ac7 52 Pfam PF07561 Domain of Unknown Function (DUF1540) 5 47 2.1E-16 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SUPERFAMILY SSF55666 451 550 3.67E-28 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Gene3D G3DSA:2.40.50.140 623 694 1.2E-25 T 13-10-2018 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 694 30.955 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Pfam PF00013 KH domain 557 615 6.2E-10 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 1.1E-18 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Pfam PF00575 S1 RNA binding domain 620 691 9.0E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Gene3D G3DSA:3.30.230.70 1 230 7.4E-85 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 1.8E-17 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Pfam PF03725 3' exoribonuclease family, domain 2 460 530 2.4E-7 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SUPERFAMILY SSF54211 7 144 7.09E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Gene3D G3DSA:3.30.230.70 235 550 1.4E-119 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Gene3D G3DSA:3.30.1370.10 551 622 1.8E-21 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SUPERFAMILY SSF54211 293 488 7.09E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SUPERFAMILY SSF54791 556 641 6.83E-24 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SMART SM00322 553 618 6.6E-14 T 13-10-2018 IPR004087 K Homology domain GO:0003676 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 PIRSF PIRSF005499 2 705 9.3E-304 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Pfam PF01138 3' exoribonuclease family, domain 1 15 144 9.9E-21 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 Pfam PF01138 3' exoribonuclease family, domain 1 324 457 2.0E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SUPERFAMILY SSF55666 145 235 5.89E-31 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SUPERFAMILY SSF50249 621 704 3.73E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_14825 c56af6924895488bf1eabb1acf198f61 705 SMART SM00316 621 691 2.3E-24 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_20250 014c15d9107a5f5b5d368fdaeb22b3bc 470 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RA13_20250 014c15d9107a5f5b5d368fdaeb22b3bc 470 PIRSF PIRSF006060 1 467 6.9E-81 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_20250 014c15d9107a5f5b5d368fdaeb22b3bc 470 Pfam PF00324 Amino acid permease 16 446 7.9E-129 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_20250 014c15d9107a5f5b5d368fdaeb22b3bc 470 TIGRFAM TIGR01773 GABAperm: GABA permease 1 450 1.4E-233 T 13-10-2018 IPR011265 GABA permease GO:0015185|GO:0015812|GO:0016021 RA13_20250 014c15d9107a5f5b5d368fdaeb22b3bc 470 Gene3D G3DSA:1.20.1740.10 8 464 1.4E-73 T 13-10-2018 RA13_04020 ca4fcf91791f9ac068179497736339dd 127 Pfam PF03899 ATP synthase I chain 10 105 2.9E-19 T 13-10-2018 IPR005598 ATP synthase protein I RA13_04020 ca4fcf91791f9ac068179497736339dd 127 ProDom PD020811 ATP SYNTHASE I ION HYDROLASE SUBUNIT I CF0 MEMBRANE HYDROGEN 23 127 2.0E-47 T 13-10-2018 RA13_06530 a0064fa1a05e989a6188b9870578776b 378 SMART SM01003 4 135 8.7E-78 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RA13_06530 a0064fa1a05e989a6188b9870578776b 378 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 13-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 RA13_06530 a0064fa1a05e989a6188b9870578776b 378 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 171 196 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 RA13_06530 a0064fa1a05e989a6188b9870578776b 378 Gene3D G3DSA:3.40.50.720 3 352 7.0E-139 T 13-10-2018 RA13_06530 a0064fa1a05e989a6188b9870578776b 378 SUPERFAMILY SSF52283 1 359 5.61E-67 T 13-10-2018 RA13_06530 a0064fa1a05e989a6188b9870578776b 378 PIRSF PIRSF000183 1 370 6.7E-196 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 RA13_06530 a0064fa1a05e989a6188b9870578776b 378 SUPERFAMILY SSF51735 135 302 3.28E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06530 a0064fa1a05e989a6188b9870578776b 378 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 2.8E-201 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 RA13_06530 a0064fa1a05e989a6188b9870578776b 378 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 135 3.2E-47 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RA13_06530 a0064fa1a05e989a6188b9870578776b 378 SMART SM01002 147 296 1.2E-87 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RA13_06530 a0064fa1a05e989a6188b9870578776b 378 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 139 351 6.1E-83 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RA13_06530 a0064fa1a05e989a6188b9870578776b 378 Gene3D G3DSA:3.40.50.720 128 304 7.0E-139 T 13-10-2018 RA13_02565 db97aa4ac0cbda2778aa1f3a9eebc2c2 487 SUPERFAMILY SSF53720 4 482 8.51E-152 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_02565 db97aa4ac0cbda2778aa1f3a9eebc2c2 487 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 1 481 73.174 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 RA13_02565 db97aa4ac0cbda2778aa1f3a9eebc2c2 487 Gene3D G3DSA:3.40.605.10 23 458 1.2E-166 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_02565 db97aa4ac0cbda2778aa1f3a9eebc2c2 487 Gene3D G3DSA:3.40.309.10 252 450 1.2E-166 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_02565 db97aa4ac0cbda2778aa1f3a9eebc2c2 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_02565 db97aa4ac0cbda2778aa1f3a9eebc2c2 487 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 8 481 3.9E-181 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RA13_02565 db97aa4ac0cbda2778aa1f3a9eebc2c2 487 Pfam PF00171 Aldehyde dehydrogenase family 15 477 4.3E-157 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 ProSitePatterns PS01034 Glycosyl hydrolases family 16 active sites. 134 144 - T 13-10-2018 IPR008263 Glycoside hydrolase, family 16, active site GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 Gene3D G3DSA:2.60.120.200 114 243 1.6E-49 T 13-10-2018 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 Gene3D G3DSA:2.60.120.200 17 112 2.7E-20 T 13-10-2018 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 SUPERFAMILY SSF49899 34 242 1.32E-59 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 Pfam PF00722 Glycosyl hydrolases family 16 56 238 1.2E-43 T 13-10-2018 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 131 146 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 91 109 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 205 227 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 185 202 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 147 160 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 110 126 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 165 182 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_13305 c8c2ad56ee720c0872e092a29f5f0eaa 243 PRINTS PR00737 Glycosyl hydrolase family 16 signature 229 241 3.2E-79 T 13-10-2018 IPR008264 Beta-glucanase GO:0004553|GO:0005975 RA13_15760 d04ae708daf18d82b6d2cb7ae2656950 308 Pfam PF02628 Cytochrome oxidase assembly protein 55 289 3.8E-29 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 RA13_15760 d04ae708daf18d82b6d2cb7ae2656950 308 Hamap MF_01664 Heme A synthase [ctaA]. 1 304 29.326 T 13-10-2018 IPR023755 Heme A synthase, type 1 GO:0006784|GO:0016020|GO:0016627|GO:0055114 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 465 585 2.6E-46 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 SUPERFAMILY SSF55604 6 79 2.35E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 Pfam PF00367 phosphotransferase system, EIIB 8 41 4.8E-16 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 3 609 1.1E-226 T 13-10-2018 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 Gene3D G3DSA:3.30.1360.60 1 76 2.1E-27 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 Gene3D G3DSA:2.70.70.10 453 609 1.9E-58 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 527 539 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 SUPERFAMILY SSF51261 457 607 1.38E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 465 589 6.1E-52 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 Pfam PF02378 Phosphotransferase system, EIIC 107 386 3.5E-36 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_02825 69391fa0d8f5241695aade5b9df1dcab 610 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 480 496 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 432 561 7.2E-4 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 170 331 1.1E-47 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 SUPERFAMILY SSF55124 347 423 2.94E-23 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 Gene3D G3DSA:3.30.413.10 428 569 3.1E-38 T 13-10-2018 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 SUPERFAMILY SSF56014 146 345 6.02E-58 T 13-10-2018 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 8 572 58.08 T 13-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 17 561 2.5E-284 T 13-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 75 136 5.3E-13 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 354 418 4.7E-15 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 PRINTS PR00397 Sirohaem Fe-binding site signature 480 498 1.6E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 PRINTS PR00397 Sirohaem Fe-binding site signature 432 450 1.6E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 SUPERFAMILY SSF55124 13 145 2.29E-32 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05705 ee3577c4d3b7a3d7e034a9b4c34e929e 573 SUPERFAMILY SSF56014 430 562 2.88E-35 T 13-10-2018 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 147 1.7E-38 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 SUPERFAMILY SSF52794 170 272 1.62E-37 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 Gene3D G3DSA:3.40.50.2300 167 272 1.7E-42 T 13-10-2018 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 Gene3D G3DSA:3.40.930.10 1 150 6.1E-46 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 297 627 6.9E-127 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 173 262 1.3E-17 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 SUPERFAMILY SSF55804 2 147 1.7E-42 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 6 133 3.0E-38 T 13-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 RA13_15995 a996440de4e6e6a54068aa23e1520c31 633 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 173 254 5.1E-31 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 Pfam PF07501 G5 domain 243 315 7.6E-20 T 13-10-2018 IPR011098 G5 domain RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 SUPERFAMILY SSF50685 381 429 2.89E-8 T 13-10-2018 IPR036908 RlpA-like domain superfamily RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 Pfam PF03990 Domain of unknown function (DUF348) 70 108 2.1E-11 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 Pfam PF03990 Domain of unknown function (DUF348) 127 167 1.1E-11 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 Pfam PF03990 Domain of unknown function (DUF348) 184 224 5.8E-14 T 13-10-2018 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 Pfam PF06725 3D domain 380 441 9.9E-22 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 SMART SM01208 238 316 9.4E-27 T 13-10-2018 IPR011098 G5 domain RA13_01515 59b2f00dcdd8f9c271eecf47862c4306 441 Gene3D G3DSA:2.20.230.10 239 316 3.8E-17 T 13-10-2018 RA13_16380 a38ef62e541566c0605770619cc067a7 85 Pfam PF09388 Spo0E like sporulation regulatory protein 10 50 2.3E-12 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 RA13_16380 a38ef62e541566c0605770619cc067a7 85 SUPERFAMILY SSF140500 6 57 4.32E-15 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 RA13_16380 a38ef62e541566c0605770619cc067a7 85 Gene3D G3DSA:1.20.58.990 6 62 1.7E-9 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 RA13_05605 f577d7fe2a89e71578f2cff51fe41774 139 SUPERFAMILY SSF47413 2 65 1.21E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_05605 f577d7fe2a89e71578f2cff51fe41774 139 SMART SM00530 7 63 2.3E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_05605 f577d7fe2a89e71578f2cff51fe41774 139 Gene3D G3DSA:1.10.260.40 2 69 1.6E-17 T 13-10-2018 RA13_05605 f577d7fe2a89e71578f2cff51fe41774 139 Pfam PF13560 Helix-turn-helix domain 3 59 4.0E-16 T 13-10-2018 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 SUPERFAMILY SSF55781 64 203 1.53E-5 T 13-10-2018 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 SMART SM00382 315 470 8.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 Gene3D G3DSA:3.30.450.40 18 204 2.8E-58 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 Gene3D G3DSA:3.40.50.300 284 467 1.6E-59 T 13-10-2018 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 Pfam PF01590 GAF domain 87 200 7.4E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 Pfam PF00158 Sigma-54 interaction domain 298 462 6.7E-64 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 SUPERFAMILY SSF52540 297 527 1.28E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 565 582 3.2E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 582 602 3.2E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 Pfam PF02954 Bacterial regulatory protein, Fis family 560 599 3.5E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 Gene3D G3DSA:1.10.8.60 468 538 3.4E-13 T 13-10-2018 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 504 513 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 SUPERFAMILY SSF46689 504 601 2.48E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 Gene3D G3DSA:1.10.10.60 539 602 3.4E-13 T 13-10-2018 RA13_19365 eda1153db03c6b7aa0a731d8d3618ab6 603 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 382 397 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RA13_15040 6be61027e6f12097ec610ef54540bf02 264 SUPERFAMILY SSF117143 92 224 1.83E-34 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RA13_15040 6be61027e6f12097ec610ef54540bf02 264 Pfam PF00460 Flagella basal body rod protein 5 35 4.0E-13 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RA13_15040 6be61027e6f12097ec610ef54540bf02 264 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 134 1.1E-42 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RA13_15040 6be61027e6f12097ec610ef54540bf02 264 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 149 245 5.5E-31 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RA13_15040 6be61027e6f12097ec610ef54540bf02 264 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 184 262 7.7E-25 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RA13_15040 6be61027e6f12097ec610ef54540bf02 264 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RA13_15040 6be61027e6f12097ec610ef54540bf02 264 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 243 2.1E-58 T 13-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 RA13_03405 cdcace37687ec59957de9eea7cbcdc9d 229 SUPERFAMILY SSF53335 10 194 3.49E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_03405 cdcace37687ec59957de9eea7cbcdc9d 229 Pfam PF13489 Methyltransferase domain 33 178 1.5E-20 T 13-10-2018 RA13_03405 cdcace37687ec59957de9eea7cbcdc9d 229 Gene3D G3DSA:3.40.50.150 20 228 6.1E-58 T 13-10-2018 RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 SMART SM00387 253 346 5.1E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 SMART SM00304 74 126 3.6E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 SUPERFAMILY SSF55874 223 343 1.57E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 Pfam PF07730 Histidine kinase 150 217 1.0E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 253 343 7.4E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 Gene3D G3DSA:1.10.287.130 74 215 5.8E-6 T 13-10-2018 RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 PIRSF PIRSF037431 7 352 3.6E-128 T 13-10-2018 IPR017202 Sensor histidine kinase LiaS/VraS GO:0000155|GO:0000160|GO:0004673|GO:0016021 RA13_05905 f48ed5a2e582b9fb43ba3e03124c61dc 354 Gene3D G3DSA:3.30.565.10 216 347 3.0E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_18870 a8e90f646e6773d4a7ddf756e57e4fff 631 PIRSF PIRSF000549 1 631 5.8E-269 T 13-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 RA13_18870 a8e90f646e6773d4a7ddf756e57e4fff 631 Pfam PF08298 PrkA AAA domain 22 371 4.3E-158 T 13-10-2018 IPR013153 PrkA AAA domain RA13_18870 a8e90f646e6773d4a7ddf756e57e4fff 631 Pfam PF06798 PrkA serine protein kinase C-terminal domain 375 624 1.3E-93 T 13-10-2018 IPR010650 PrkA C-terminal domain RA13_18870 a8e90f646e6773d4a7ddf756e57e4fff 631 SUPERFAMILY SSF52540 68 459 6.31E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18870 a8e90f646e6773d4a7ddf756e57e4fff 631 SMART SM00763 21 371 4.5E-197 T 13-10-2018 IPR013153 PrkA AAA domain RA13_08950 04ccd37972e884d8be3eb27155124816 518 Pfam PF01943 Polysaccharide biosynthesis protein 6 308 4.3E-69 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 RA13_08950 04ccd37972e884d8be3eb27155124816 518 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 360 500 6.3E-16 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain RA13_08950 04ccd37972e884d8be3eb27155124816 518 PIRSF PIRSF038958 1 517 1.3E-196 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type RA13_08950 04ccd37972e884d8be3eb27155124816 518 TIGRFAM TIGR02900 spore_V_B: stage V sporulation protein B 6 494 5.9E-190 T 13-10-2018 IPR014249 Sporulation stage V protein B RA13_00725 c19447e0b7232860e23a4f890c9aa78b 455 Gene3D G3DSA:3.30.1360.60 2 80 1.3E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_00725 c19447e0b7232860e23a4f890c9aa78b 455 Pfam PF00367 phosphotransferase system, EIIB 13 43 3.9E-12 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_00725 c19447e0b7232860e23a4f890c9aa78b 455 Pfam PF02378 Phosphotransferase system, EIIC 120 389 4.6E-38 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_00725 c19447e0b7232860e23a4f890c9aa78b 455 SUPERFAMILY SSF55604 10 83 3.53E-16 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_00335 5e7673bd4d876f09a1313ce364cdfd10 66 Gene3D G3DSA:2.70.70.10 12 66 7.5E-9 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_00335 5e7673bd4d876f09a1313ce364cdfd10 66 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 21 56 3.6E-8 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 RA13_00335 5e7673bd4d876f09a1313ce364cdfd10 66 SUPERFAMILY SSF51261 21 61 7.85E-9 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_08335 427c150588db161df9ae53e7a58bda21 272 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 16 240 5.0E-41 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RA13_08335 427c150588db161df9ae53e7a58bda21 272 Pfam PF13344 Haloacid dehalogenase-like hydrolase 16 116 3.6E-26 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA RA13_08335 427c150588db161df9ae53e7a58bda21 272 SUPERFAMILY SSF56784 15 262 3.46E-58 T 13-10-2018 IPR036412 HAD-like superfamily RA13_08335 427c150588db161df9ae53e7a58bda21 272 Pfam PF13242 HAD-hyrolase-like 191 262 2.1E-17 T 13-10-2018 RA13_08335 427c150588db161df9ae53e7a58bda21 272 Gene3D G3DSA:3.40.50.1000 93 191 2.1E-68 T 13-10-2018 IPR023214 HAD superfamily RA13_08335 427c150588db161df9ae53e7a58bda21 272 Gene3D G3DSA:3.40.50.1000 16 259 2.1E-68 T 13-10-2018 IPR023214 HAD superfamily RA13_05175 693ad697d8893ac2fd2327092722b602 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 3.8E-30 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RA13_05175 693ad697d8893ac2fd2327092722b602 324 SUPERFAMILY SSF52283 2 133 8.08E-29 T 13-10-2018 RA13_05175 693ad697d8893ac2fd2327092722b602 324 SUPERFAMILY SSF51735 105 290 2.17E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05175 693ad697d8893ac2fd2327092722b602 324 Gene3D G3DSA:3.40.50.720 99 290 1.1E-113 T 13-10-2018 RA13_05175 693ad697d8893ac2fd2327092722b602 324 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 178 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RA13_05175 693ad697d8893ac2fd2327092722b602 324 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 199 221 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RA13_05175 693ad697d8893ac2fd2327092722b602 324 Gene3D G3DSA:3.40.50.720 5 316 1.1E-113 T 13-10-2018 RA13_05175 693ad697d8893ac2fd2327092722b602 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 289 1.1E-66 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RA13_03045 5c288c6101898909c2f7f8b16931830f 157 Gene3D G3DSA:3.20.90.20 1 155 7.8E-16 T 13-10-2018 IPR038595 LURP-one-related superfamily RA13_03045 5c288c6101898909c2f7f8b16931830f 157 SUPERFAMILY SSF54518 1 151 1.91E-38 T 13-10-2018 IPR025659 Tubby-like, C-terminal RA13_03045 5c288c6101898909c2f7f8b16931830f 157 Pfam PF04525 LURP-one-related 6 147 1.3E-27 T 13-10-2018 IPR007612 LURP-one-related RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SUPERFAMILY SSF51126 380 567 6.29E-16 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 244 266 1300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 147 169 34.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 409 430 33.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 107 146 5.9 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 286 311 380.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 479 502 1900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 182 204 3500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 205 233 680.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 455 475 4500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 503 529 5900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 385 408 5900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 318 339 13.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SMART SM00710 362 382 5500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 Pfam PF13229 Right handed beta helix region 108 294 3.9E-7 T 13-10-2018 IPR039448 Right handed beta helix domain RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 Gene3D G3DSA:2.160.20.10 28 378 1.7E-36 T 13-10-2018 IPR012334 Pectin lyase fold RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 SUPERFAMILY SSF51126 30 374 1.15E-25 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 Gene3D G3DSA:2.160.20.10 395 578 2.0E-15 T 13-10-2018 IPR012334 Pectin lyase fold RA13_13825 ba3a187e2fbfb87e82a1e101464b6f33 581 Pfam PF05048 Periplasmic copper-binding protein (NosD) 379 568 6.6E-12 T 13-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 RA13_18865 f4ff144cd884d8ae29ef351442ec3a38 392 Pfam PF04285 Protein of unknown function (DUF444) 195 383 1.0E-67 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 RA13_18865 f4ff144cd884d8ae29ef351442ec3a38 392 Pfam PF04285 Protein of unknown function (DUF444) 12 186 1.0E-35 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 RA13_18865 f4ff144cd884d8ae29ef351442ec3a38 392 TIGRFAM TIGR02877 spore_yhbH: sporulation protein YhbH 9 380 1.2E-187 T 13-10-2018 IPR014230 Sporulation protein YhbH RA13_18865 f4ff144cd884d8ae29ef351442ec3a38 392 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 7 385 31.432 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 RA13_16540 31ffcf1a8ef8805417d8ea5cf62f35bf 523 SUPERFAMILY SSF53649 38 515 2.13E-52 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_16540 31ffcf1a8ef8805417d8ea5cf62f35bf 523 Gene3D G3DSA:3.40.720.10 29 501 1.8E-34 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_16540 31ffcf1a8ef8805417d8ea5cf62f35bf 523 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 44 354 1.4E-21 T 13-10-2018 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 RA13_08710 e136e6d6bd9beebb33f71635163c468a 189 Gene3D G3DSA:3.90.950.10 1 189 4.4E-80 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RA13_08710 e136e6d6bd9beebb33f71635163c468a 189 Hamap MF_00528 Septum formation protein Maf [maf]. 4 189 32.63 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RA13_08710 e136e6d6bd9beebb33f71635163c468a 189 Pfam PF02545 Maf-like protein 4 184 6.3E-60 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RA13_08710 e136e6d6bd9beebb33f71635163c468a 189 PIRSF PIRSF006305 1 189 2.7E-65 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RA13_08710 e136e6d6bd9beebb33f71635163c468a 189 SUPERFAMILY SSF52972 2 184 6.28E-65 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RA13_08710 e136e6d6bd9beebb33f71635163c468a 189 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 183 2.4E-76 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 2 179 26.082 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 Gene3D G3DSA:2.40.240.10 1 93 6.4E-26 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 4 91 4.0E-36 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 Gene3D G3DSA:2.170.120.20 94 167 3.3E-28 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 Pfam PF01386 Ribosomal L25p family 4 90 2.6E-22 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 99 181 5.0E-26 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 SUPERFAMILY SSF50715 2 186 9.77E-56 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RA13_01455 f9a730c4487e7bfce6cf35ed28ac51b2 205 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 4 178 4.8E-64 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 SUPERFAMILY SSF103473 17 475 2.35E-58 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 435 2.6E-94 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 Gene3D G3DSA:1.20.1250.20 261 476 6.0E-20 T 13-10-2018 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 Pfam PF07690 Major Facilitator Superfamily 21 414 2.9E-47 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 80 102 1.7E-8 T 13-10-2018 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 1.7E-8 T 13-10-2018 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 337 357 1.7E-8 T 13-10-2018 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 1.7E-8 T 13-10-2018 RA13_00170 efe52aa6b78eaafc83f5ca48f45b12c6 478 Gene3D G3DSA:1.20.1720.10 17 246 2.0E-39 T 13-10-2018 RA13_09615 c2cef25e710669e70d8862dd648eaaca 331 Pfam PF12127 SigmaW regulon antibacterial 10 319 1.8E-162 T 13-10-2018 IPR022853 Uncharacterised protein family YdfA-immunity RA13_09615 c2cef25e710669e70d8862dd648eaaca 331 Hamap MF_01562 UPF0365 protein . 3 323 49.634 T 13-10-2018 IPR022853 Uncharacterised protein family YdfA-immunity RA13_08580 2079bb17b0709bdd78817835f491ee57 172 Gene3D G3DSA:3.30.70.1150 84 165 2.3E-29 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal RA13_08580 2079bb17b0709bdd78817835f491ee57 172 SUPERFAMILY SSF55021 2 77 8.92E-20 T 13-10-2018 RA13_08580 2079bb17b0709bdd78817835f491ee57 172 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 77 7.0E-37 T 13-10-2018 RA13_08580 2079bb17b0709bdd78817835f491ee57 172 Gene3D G3DSA:3.30.70.260 1 80 5.3E-30 T 13-10-2018 RA13_08580 2079bb17b0709bdd78817835f491ee57 172 SUPERFAMILY SSF55021 80 160 4.3E-26 T 13-10-2018 RA13_08580 2079bb17b0709bdd78817835f491ee57 172 Pfam PF01842 ACT domain 4 68 2.2E-15 T 13-10-2018 IPR002912 ACT domain RA13_08580 2079bb17b0709bdd78817835f491ee57 172 Pfam PF10369 Small subunit of acetolactate synthase 85 158 2.8E-29 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RA13_08580 2079bb17b0709bdd78817835f491ee57 172 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 2 158 7.8E-67 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RA13_21905 b4946975be1ead4804f1b0a183e887e5 253 Pfam PF08892 YqcI/YcgG family 29 243 2.9E-78 T 13-10-2018 IPR014988 Uncharacterised protein family, YqcI/YcgG RA13_19580 f6ff8ee76dc4b42bc913d7647243c825 220 Pfam PF03473 MOSC domain 55 164 2.7E-23 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 RA13_19580 f6ff8ee76dc4b42bc913d7647243c825 220 SUPERFAMILY SSF50800 7 216 1.1E-68 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RA13_19580 f6ff8ee76dc4b42bc913d7647243c825 220 Pfam PF03475 3-alpha domain 174 214 7.6E-10 T 13-10-2018 IPR005163 3-alpha domain RA13_19580 f6ff8ee76dc4b42bc913d7647243c825 220 Gene3D G3DSA:2.40.33.20 2 219 4.8E-75 T 13-10-2018 RA13_08705 0f44aa0aae10660bb654f7abaf833cc2 338 Pfam PF05036 Sporulation related domain 185 232 1.1E-8 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 RA13_08705 0f44aa0aae10660bb654f7abaf833cc2 338 SUPERFAMILY SSF110997 185 250 2.88E-8 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RA13_08705 0f44aa0aae10660bb654f7abaf833cc2 338 Gene3D G3DSA:3.30.70.1070 186 253 6.2E-8 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 Gene3D G3DSA:1.10.287.950 264 565 9.0E-65 T 13-10-2018 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 SUPERFAMILY SSF58104 229 564 2.09E-69 T 13-10-2018 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 Pfam PF00672 HAMP domain 208 258 9.5E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 SMART SM00283 290 565 1.2E-88 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 519 1.9E-42 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 181 1.4E-34 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain RA13_05595 2407a3ffe320026f711b30846362f5b0 566 Gene3D G3DSA:1.20.1480.50 166 263 1.4E-15 T 13-10-2018 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 7.4E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 417 446 7.4E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 388 415 7.4E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_05595 2407a3ffe320026f711b30846362f5b0 566 SMART SM00304 208 261 1.7E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_11685 c348d8ac1a588264a83dac846ebbe421 74 Gene3D G3DSA:1.10.443.10 1 74 7.2E-6 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RA13_11685 c348d8ac1a588264a83dac846ebbe421 74 SUPERFAMILY SSF56349 2 71 7.36E-6 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RA13_09465 b7db963b4ae48c0169950540cfaddae3 366 Gene3D G3DSA:3.40.50.300 56 224 2.3E-50 T 13-10-2018 RA13_09465 b7db963b4ae48c0169950540cfaddae3 366 SUPERFAMILY SSF52540 62 277 1.26E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09465 b7db963b4ae48c0169950540cfaddae3 366 Pfam PF01926 50S ribosome-binding GTPase 162 226 2.7E-13 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_09465 b7db963b4ae48c0169950540cfaddae3 366 TIGRFAM TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH 6 366 5.3E-161 T 13-10-2018 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH RA13_21065 677a5768a24ef60b4539a68284222e0a 514 SUPERFAMILY SSF52540 88 375 2.49E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_21065 677a5768a24ef60b4539a68284222e0a 514 Gene3D G3DSA:3.40.50.300 11 225 9.1E-77 T 13-10-2018 RA13_21065 677a5768a24ef60b4539a68284222e0a 514 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 167 175 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RA13_21065 677a5768a24ef60b4539a68284222e0a 514 Hamap MF_01493 DEAD-box ATP-dependent RNA helicase CshA [cshA]. 20 514 45.965 T 13-10-2018 IPR030880 DEAD-box ATP-dependent RNA helicase CshA GO:0004004|GO:0005524|GO:0010501 RA13_21065 677a5768a24ef60b4539a68284222e0a 514 SMART SM00490 272 353 7.0E-34 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_21065 677a5768a24ef60b4539a68284222e0a 514 Pfam PF00271 Helicase conserved C-terminal domain 245 353 8.7E-29 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_21065 677a5768a24ef60b4539a68284222e0a 514 SMART SM00487 39 236 7.7E-67 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_21065 677a5768a24ef60b4539a68284222e0a 514 Gene3D G3DSA:3.40.50.300 228 446 4.2E-53 T 13-10-2018 RA13_21065 677a5768a24ef60b4539a68284222e0a 514 Pfam PF00270 DEAD/DEAH box helicase 44 209 1.1E-49 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_19645 de62d2c6051d9ccbe43f7b5c86813ad4 313 Gene3D G3DSA:3.40.50.1980 35 143 2.7E-26 T 13-10-2018 RA13_19645 de62d2c6051d9ccbe43f7b5c86813ad4 313 SUPERFAMILY SSF53807 41 308 1.61E-62 T 13-10-2018 RA13_19645 de62d2c6051d9ccbe43f7b5c86813ad4 313 Pfam PF01497 Periplasmic binding protein 59 286 1.0E-39 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_19645 de62d2c6051d9ccbe43f7b5c86813ad4 313 Gene3D G3DSA:3.40.50.1980 145 312 2.6E-53 T 13-10-2018 RA13_14950 e1201e4c1e03bf3113dd8345a3b7206d 166 Gene3D G3DSA:3.30.1330.200 6 166 2.1E-44 T 13-10-2018 IPR038592 CheD-like superfamily RA13_14950 e1201e4c1e03bf3113dd8345a3b7206d 166 Pfam PF03975 CheD chemotactic sensory transduction 52 158 2.7E-32 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RA13_14950 e1201e4c1e03bf3113dd8345a3b7206d 166 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 5 162 26.11 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 RA13_14950 e1201e4c1e03bf3113dd8345a3b7206d 166 SUPERFAMILY SSF64438 8 164 4.67E-43 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic RA13_21175 ad3dd99d7bf5fdacf896b8b054d0e43b 150 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 90 145 8.1E-17 T 13-10-2018 IPR018691 Protein of unknown function DUF2188 RA13_11220 c97fef3dac733a0c0c5f1a2245f76fb0 277 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 263 42.566 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RA13_11220 c97fef3dac733a0c0c5f1a2245f76fb0 277 PIRSF PIRSF000388 1 266 2.9E-108 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RA13_11220 c97fef3dac733a0c0c5f1a2245f76fb0 277 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 264 9.4E-130 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RA13_11220 c97fef3dac733a0c0c5f1a2245f76fb0 277 Gene3D G3DSA:3.20.20.60 2 272 5.5E-111 T 13-10-2018 RA13_11220 c97fef3dac733a0c0c5f1a2245f76fb0 277 Pfam PF02548 Ketopantoate hydroxymethyltransferase 6 258 1.1E-109 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RA13_11220 c97fef3dac733a0c0c5f1a2245f76fb0 277 SUPERFAMILY SSF51621 3 263 8.52E-104 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RA13_03770 4d2ab34af02df427c7869a80a1eec39a 457 Gene3D G3DSA:2.130.10.10 136 254 9.2E-16 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_03770 4d2ab34af02df427c7869a80a1eec39a 457 Gene3D G3DSA:2.130.10.10 387 457 3.8E-10 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_03770 4d2ab34af02df427c7869a80a1eec39a 457 SUPERFAMILY SSF50974 148 455 5.23E-35 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RA13_03770 4d2ab34af02df427c7869a80a1eec39a 457 Gene3D G3DSA:2.130.10.10 255 383 1.9E-10 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 Gene3D G3DSA:3.20.20.10 16 234 4.9E-132 T 13-10-2018 IPR029066 PLP-binding barrel RA13_21035 45735bbc407b35b940d6d4204de6e140 389 Pfam PF00842 Alanine racemase, C-terminal domain 245 368 1.0E-44 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 SUPERFAMILY SSF50621 240 380 4.19E-50 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 Pfam PF01168 Alanine racemase, N-terminal domain 14 230 2.1E-68 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 Hamap MF_01201 Alanine racemase. 7 370 34.911 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 38 48 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 33 49 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 298 315 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 203 230 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 261 276 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 69 87 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 163 174 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 352 365 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 128 140 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 PRINTS PR00992 Alanine racemase signature 278 293 2.6E-72 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 SMART SM01005 245 370 2.7E-68 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 Gene3D G3DSA:2.40.37.10 14 367 4.9E-132 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 TIGRFAM TIGR00492 alr: alanine racemase 8 370 2.6E-143 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_21035 45735bbc407b35b940d6d4204de6e140 389 SUPERFAMILY SSF51419 14 235 1.09E-65 T 13-10-2018 IPR029066 PLP-binding barrel RA13_20600 9a55049e9e6a5c4b34356d4a33c3c41d 401 SUPERFAMILY SSF103473 5 398 3.27E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_20600 9a55049e9e6a5c4b34356d4a33c3c41d 401 Gene3D G3DSA:1.20.1720.10 13 393 3.9E-98 T 13-10-2018 RA13_20600 9a55049e9e6a5c4b34356d4a33c3c41d 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 393 1.2E-143 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RA13_20600 9a55049e9e6a5c4b34356d4a33c3c41d 401 Pfam PF07690 Major Facilitator Superfamily 19 355 3.3E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_07755 7d8c637430b6a59abb33e35986edcd01 148 Pfam PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ 6 145 3.4E-64 T 13-10-2018 IPR019884 YtoQ family protein RA13_07755 7d8c637430b6a59abb33e35986edcd01 148 Gene3D G3DSA:3.40.50.450 2 147 2.4E-7 T 13-10-2018 RA13_07755 7d8c637430b6a59abb33e35986edcd01 148 SUPERFAMILY SSF52309 2 117 7.02E-5 T 13-10-2018 RA13_07755 7d8c637430b6a59abb33e35986edcd01 148 TIGRFAM TIGR03646 YtoQ_fam: YtoQ family protein 3 146 4.0E-70 T 13-10-2018 IPR019884 YtoQ family protein RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 289 373 4.7E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 535 549 4.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 565 577 4.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 549 565 4.1E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 Pfam PF00196 Bacterial regulatory proteins, luxR family 535 589 1.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 Pfam PF07730 Histidine kinase 184 247 3.8E-13 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 SUPERFAMILY SSF46894 530 595 1.33E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 SMART SM00421 532 589 1.4E-17 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 SMART SM00387 286 376 4.4E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 Gene3D G3DSA:3.30.565.10 249 377 5.0E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 SUPERFAMILY SSF55874 257 373 7.73E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 Pfam PF00072 Response regulator receiver domain 386 496 1.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 Gene3D G3DSA:3.40.50.12740 383 595 4.6E-61 T 13-10-2018 RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 SUPERFAMILY SSF52172 382 514 8.11E-33 T 13-10-2018 IPR011006 CheY-like superfamily RA13_20380 1ba7c9162c057d6af24c3ad685ab2331 596 SMART SM00448 383 496 1.3E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_18960 eb03357082fc9e4aa874d77261b2a8ed 590 Pfam PF13667 ThiC-associated domain 17 93 4.1E-32 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RA13_18960 eb03357082fc9e4aa874d77261b2a8ed 590 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 132 558 100.476 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RA13_18960 eb03357082fc9e4aa874d77261b2a8ed 590 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 132 556 1.8E-228 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RA13_18960 eb03357082fc9e4aa874d77261b2a8ed 590 Pfam PF01964 Radical SAM ThiC family 133 553 1.4E-205 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RA13_18960 eb03357082fc9e4aa874d77261b2a8ed 590 Gene3D G3DSA:3.20.20.540 176 489 2.2E-157 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RA13_20025 5a594c1f4fbe06c2baf104f90d04343e 303 SUPERFAMILY SSF111331 1 296 5.89E-87 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RA13_20025 5a594c1f4fbe06c2baf104f90d04343e 303 SMART SM00046 3 131 1.6E-8 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RA13_20025 5a594c1f4fbe06c2baf104f90d04343e 303 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 295 1.4E-132 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase RA13_20025 5a594c1f4fbe06c2baf104f90d04343e 303 Gene3D G3DSA:3.40.50.10330 6 125 5.0E-91 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RA13_20025 5a594c1f4fbe06c2baf104f90d04343e 303 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 127 3.1E-38 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RA13_20025 5a594c1f4fbe06c2baf104f90d04343e 303 Gene3D G3DSA:2.60.200.40 126 279 5.0E-91 T 13-10-2018 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 SUPERFAMILY SSF54211 6 158 2.2E-30 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 PIRSF PIRSF000676 4 301 9.8E-94 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 Hamap MF_00384 Homoserine kinase [thrB]. 10 299 29.962 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 TIGRFAM TIGR00191 thrB: homoserine kinase 8 305 7.3E-106 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 PRINTS PR00958 Homoserine kinase signature 97 112 3.1E-38 T 13-10-2018 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 PRINTS PR00958 Homoserine kinase signature 131 144 3.1E-38 T 13-10-2018 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 PRINTS PR00958 Homoserine kinase signature 169 186 3.1E-38 T 13-10-2018 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 PRINTS PR00958 Homoserine kinase signature 15 30 3.1E-38 T 13-10-2018 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 PRINTS PR00958 Homoserine kinase signature 249 264 3.1E-38 T 13-10-2018 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 Pfam PF08544 GHMP kinases C terminal 204 282 3.2E-10 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 Gene3D G3DSA:3.30.230.10 6 165 2.0E-43 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 Gene3D G3DSA:3.30.70.890 166 286 1.2E-36 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 Pfam PF00288 GHMP kinases N terminal domain 83 144 3.9E-12 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RA13_06370 8247a8191d9545ce3327b7e498bf54ee 309 SUPERFAMILY SSF55060 164 284 5.76E-34 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RA13_03135 2c17df0b88c72c36704fef4c02f17df9 280 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 11 277 19.68 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RA13_03135 2c17df0b88c72c36704fef4c02f17df9 280 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 9 278 9.7E-89 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RA13_03135 2c17df0b88c72c36704fef4c02f17df9 280 Gene3D G3DSA:3.40.1190.20 3 280 8.2E-87 T 13-10-2018 IPR029056 Ribokinase-like RA13_03135 2c17df0b88c72c36704fef4c02f17df9 280 Pfam PF01256 Carbohydrate kinase 35 273 5.8E-71 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RA13_03135 2c17df0b88c72c36704fef4c02f17df9 280 SUPERFAMILY SSF53613 8 278 1.46E-70 T 13-10-2018 IPR029056 Ribokinase-like RA13_03135 2c17df0b88c72c36704fef4c02f17df9 280 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 216 226 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site RA13_03615 0d0d2a24f1d12e43c323291516a90978 153 Gene3D G3DSA:2.60.40.3490 27 153 7.6E-46 T 13-10-2018 IPR038480 YuaB-like superfamily RA13_03615 0d0d2a24f1d12e43c323291516a90978 153 ProDom PD034110 YWEA MEMBRANE YUAB TRANSMEMBRANE ORF-1 1 153 4.0E-70 T 13-10-2018 IPR034650 YuaB-like RA13_19175 87d3928e00cb8c514f1b84aae8bf1893 178 Gene3D G3DSA:2.30.30.40 48 105 1.8E-12 T 13-10-2018 RA13_19175 87d3928e00cb8c514f1b84aae8bf1893 178 SMART SM00287 46 109 8.7E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_19175 87d3928e00cb8c514f1b84aae8bf1893 178 SMART SM00287 116 176 0.88 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_19175 87d3928e00cb8c514f1b84aae8bf1893 178 Pfam PF08239 Bacterial SH3 domain 55 105 2.9E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_10650 0be1da3885cbadc5a0f6d60fb4665af4 338 Gene3D G3DSA:3.40.47.40 1 338 6.2E-162 T 13-10-2018 IPR038369 Stage V sporulation AD superfamily RA13_10650 0be1da3885cbadc5a0f6d60fb4665af4 338 SUPERFAMILY SSF53901 57 312 1.05E-16 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_10650 0be1da3885cbadc5a0f6d60fb4665af4 338 PIRSF PIRSF011570 1 335 7.3E-170 T 13-10-2018 IPR010894 Stage V sporulation AD RA13_10650 0be1da3885cbadc5a0f6d60fb4665af4 338 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 6 332 1.9E-170 T 13-10-2018 IPR010894 Stage V sporulation AD RA13_10650 0be1da3885cbadc5a0f6d60fb4665af4 338 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 5 332 5.1E-156 T 13-10-2018 IPR010894 Stage V sporulation AD RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:3.90.1110.10 153 262 7.6E-8 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 ProSitePatterns PS01166 RNA polymerases beta chain signature. 922 934 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Pfam PF04563 RNA polymerase beta subunit 28 454 3.1E-30 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 204 896 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:3.90.1800.10 1057 1110 1.1E-10 T 13-10-2018 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Pfam PF04560 RNA polymerase Rpb2, domain 7 1071 1145 4.7E-27 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Pfam PF10385 RNA polymerase beta subunit external 1 domain 547 614 4.2E-26 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 15 1147 12.591 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Pfam PF04561 RNA polymerase Rpb2, domain 2 140 290 1.1E-26 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Pfam PF04561 RNA polymerase Rpb2, domain 2 371 410 1.4E-6 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:3.90.1100.10 605 671 7.9E-19 T 13-10-2018 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:3.90.1100.10 20 152 2.2E-53 T 13-10-2018 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 SUPERFAMILY SSF64484 13 1156 0.0 T 13-10-2018 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:2.40.50.100 672 751 2.7E-27 T 13-10-2018 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:3.90.1100.10 389 593 2.8E-74 T 13-10-2018 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:2.40.50.150 791 930 4.0E-61 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Pfam PF04565 RNA polymerase Rpb2, domain 3 469 537 1.7E-30 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:2.40.270.10 981 1047 4.7E-25 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Pfam PF00562 RNA polymerase Rpb2, domain 6 676 1069 1.3E-164 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_01095 8f2b22a5ee81a3973361790b80699403 1194 Gene3D G3DSA:2.40.270.10 752 790 4.3E-6 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 403 3.7E-151 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 Pfam PF00696 Amino acid kinase family 2 235 2.7E-47 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 Gene3D G3DSA:3.30.2130.10 256 404 1.5E-32 T 13-10-2018 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 Gene3D G3DSA:3.40.1160.10 1 255 2.4E-81 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 Pfam PF13840 ACT domain 336 398 1.9E-21 T 13-10-2018 IPR027795 CASTOR, ACT domain RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 SUPERFAMILY SSF55021 334 403 2.37E-16 T 13-10-2018 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 SUPERFAMILY SSF55021 260 346 3.0E-12 T 13-10-2018 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 65 401 7.0E-92 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 SUPERFAMILY SSF53633 3 247 3.01E-67 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 PIRSF PIRSF000726 1 63 1.2E-7 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_14790 5bb7b03121f33cdbb7fe03d23ad77b82 404 PIRSF PIRSF000726 59 404 3.2E-86 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RA13_05880 854559edf4b4996b65bd3b37807df240 423 Pfam PF07690 Major Facilitator Superfamily 31 365 5.3E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_05880 854559edf4b4996b65bd3b37807df240 423 SUPERFAMILY SSF103473 28 408 6.28E-32 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_05880 854559edf4b4996b65bd3b37807df240 423 Gene3D G3DSA:1.20.1250.20 24 406 3.8E-23 T 13-10-2018 RA13_21355 baf7e79c8e4a834ec84a97d4e59eabef 257 Pfam PF07286 Protein of unknown function (DUF1445) 106 248 5.2E-68 T 13-10-2018 IPR009906 D-glutamate cyclase RA13_21355 baf7e79c8e4a834ec84a97d4e59eabef 257 Gene3D G3DSA:3.30.2040.10 116 228 1.2E-97 T 13-10-2018 RA13_21355 baf7e79c8e4a834ec84a97d4e59eabef 257 Hamap MF_01830 Putative hydro-lyase . 2 256 54.677 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 RA13_21355 baf7e79c8e4a834ec84a97d4e59eabef 257 Gene3D G3DSA:3.40.1640.10 11 244 1.2E-97 T 13-10-2018 RA13_21355 baf7e79c8e4a834ec84a97d4e59eabef 257 SUPERFAMILY SSF160920 2 249 1.57E-115 T 13-10-2018 IPR038021 Putative hydro-lyase RA13_21355 baf7e79c8e4a834ec84a97d4e59eabef 257 PIRSF PIRSF029755 1 257 6.7E-128 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 RA13_19395 d0e8d19b60318feb25aae68c5f659967 327 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 99 117 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RA13_19395 d0e8d19b60318feb25aae68c5f659967 327 SUPERFAMILY SSF51395 13 317 1.14E-59 T 13-10-2018 RA13_19395 d0e8d19b60318feb25aae68c5f659967 327 PIRSF PIRSF006621 1 326 5.3E-84 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RA13_19395 d0e8d19b60318feb25aae68c5f659967 327 Gene3D G3DSA:3.20.20.70 13 248 1.4E-60 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_19395 d0e8d19b60318feb25aae68c5f659967 327 Pfam PF01207 Dihydrouridine synthase (Dus) 15 316 6.7E-49 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RA13_08175 fe9b8356afc95e54db19e394f2a9690f 398 SUPERFAMILY SSF103473 5 386 1.19E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_08175 fe9b8356afc95e54db19e394f2a9690f 398 Gene3D G3DSA:1.20.1250.20 4 382 1.5E-50 T 13-10-2018 RA13_08175 fe9b8356afc95e54db19e394f2a9690f 398 Pfam PF07690 Major Facilitator Superfamily 16 325 6.1E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_10000 89a25b82ed5c4645880fea6632d2e7f6 59 Pfam PF14038 YqzE-like protein 2 54 1.4E-26 T 13-10-2018 IPR025622 YqzE-like protein RA13_11420 559365ab921adab4d2ca2d6441028ff3 365 Gene3D G3DSA:3.40.47.10 1 212 1.0E-61 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_11420 559365ab921adab4d2ca2d6441028ff3 365 Pfam PF00195 Chalcone and stilbene synthases, N-terminal domain 2 203 2.6E-19 T 13-10-2018 IPR001099 Chalcone/stilbene synthase, N-terminal RA13_11420 559365ab921adab4d2ca2d6441028ff3 365 Gene3D G3DSA:3.40.47.10 219 361 4.9E-37 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_11420 559365ab921adab4d2ca2d6441028ff3 365 SUPERFAMILY SSF53901 219 361 2.56E-34 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_11420 559365ab921adab4d2ca2d6441028ff3 365 SUPERFAMILY SSF53901 1 207 3.79E-44 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_11420 559365ab921adab4d2ca2d6441028ff3 365 Pfam PF02797 Chalcone and stilbene synthases, C-terminal domain 227 358 2.2E-15 T 13-10-2018 IPR012328 Chalcone/stilbene synthase, C-terminal RA13_11420 559365ab921adab4d2ca2d6441028ff3 365 PIRSF PIRSF000451 1 364 1.1E-126 T 13-10-2018 IPR011141 Polyketide synthase, type III GO:0009058|GO:0016747 RA13_00230 f73fc799d81e990118079560c47b41bb 311 SMART SM00387 198 310 7.3E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_00230 f73fc799d81e990118079560c47b41bb 311 Pfam PF00512 His Kinase A (phospho-acceptor) domain 85 152 1.3E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_00230 f73fc799d81e990118079560c47b41bb 311 SMART SM00388 85 152 9.0E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_00230 f73fc799d81e990118079560c47b41bb 311 PRINTS PR00344 Bacterial sensor protein C-terminal signature 235 249 1.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00230 f73fc799d81e990118079560c47b41bb 311 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 288 1.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00230 f73fc799d81e990118079560c47b41bb 311 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 307 1.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00230 f73fc799d81e990118079560c47b41bb 311 PRINTS PR00344 Bacterial sensor protein C-terminal signature 253 263 1.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00230 f73fc799d81e990118079560c47b41bb 311 SUPERFAMILY SSF55874 141 308 7.73E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00230 f73fc799d81e990118079560c47b41bb 311 Gene3D G3DSA:1.10.287.130 76 156 1.0E-16 T 13-10-2018 RA13_00230 f73fc799d81e990118079560c47b41bb 311 SUPERFAMILY SSF47384 73 153 9.42E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_00230 f73fc799d81e990118079560c47b41bb 311 Gene3D G3DSA:3.30.565.10 159 310 3.0E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00230 f73fc799d81e990118079560c47b41bb 311 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 198 307 1.4E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_09555 e7b3a75e3417c60b76781c5343368c24 379 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 2 367 1.7E-166 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 RA13_09555 e7b3a75e3417c60b76781c5343368c24 379 Pfam PF06969 HemN C-terminal domain 301 364 7.0E-12 T 13-10-2018 IPR010723 HemN, C-terminal RA13_09555 e7b3a75e3417c60b76781c5343368c24 379 Gene3D G3DSA:3.80.30.20 2 300 9.4E-105 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RA13_09555 e7b3a75e3417c60b76781c5343368c24 379 SUPERFAMILY SSF102114 3 376 2.22E-119 T 13-10-2018 RA13_09555 e7b3a75e3417c60b76781c5343368c24 379 Pfam PF04055 Radical SAM superfamily 6 176 6.7E-26 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_09555 e7b3a75e3417c60b76781c5343368c24 379 SMART SM00729 1 222 3.9E-61 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RA13_03565 19569ddded7d1fe9813ea200073e8d73 439 Pfam PF00860 Permease family 2 390 1.4E-89 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RA13_03565 19569ddded7d1fe9813ea200073e8d73 439 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 336 356 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RA13_04000 8d4301175d45dc45e17c6e80877bdbd0 149 PIRSF PIRSF005384 1 148 1.3E-57 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RA13_04000 8d4301175d45dc45e17c6e80877bdbd0 149 SUPERFAMILY SSF89623 1 148 1.83E-57 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RA13_04000 8d4301175d45dc45e17c6e80877bdbd0 149 Pfam PF02502 Ribose/Galactose Isomerase 3 141 1.1E-55 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RA13_04000 8d4301175d45dc45e17c6e80877bdbd0 149 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 147 3.1E-64 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RA13_04000 8d4301175d45dc45e17c6e80877bdbd0 149 Gene3D G3DSA:3.40.1400.10 1 149 1.4E-58 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 RA13_04000 8d4301175d45dc45e17c6e80877bdbd0 149 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 144 6.9E-51 T 13-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 RA13_18240 418fdb2283b9d4ead184c5eb06ed0715 351 SUPERFAMILY SSF51726 3 343 1.15E-101 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_18240 418fdb2283b9d4ead184c5eb06ed0715 351 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 6 341 5.4E-118 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RA13_18240 418fdb2283b9d4ead184c5eb06ed0715 351 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RA13_18240 418fdb2283b9d4ead184c5eb06ed0715 351 Gene3D G3DSA:3.20.20.210 1 351 5.0E-146 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_18240 418fdb2283b9d4ead184c5eb06ed0715 351 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 140 156 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RA13_18240 418fdb2283b9d4ead184c5eb06ed0715 351 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 342 45.13 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RA13_18240 418fdb2283b9d4ead184c5eb06ed0715 351 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 340 2.5E-121 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RA13_06250 143c4bb173f29634c7ae0a312ebcd2d0 295 TIGRFAM TIGR03891 thiopep_ocin: thiopeptide-type bacteriocin biosynthesis domain 4 286 1.1E-29 T 13-10-2018 IPR023809 Thiopeptide-type bacteriocin biosynthesis domain RA13_06250 143c4bb173f29634c7ae0a312ebcd2d0 295 Pfam PF14028 Lantibiotic biosynthesis dehydratase C-term 4 286 4.2E-41 T 13-10-2018 IPR023809 Thiopeptide-type bacteriocin biosynthesis domain RA13_19940 58c884b5d7b50eeef2aba3e69ee93b12 87 Pfam PF12652 CotJB protein 11 86 2.1E-28 T 13-10-2018 IPR024207 Spore coat assembly protein CotJB, domain RA13_19940 58c884b5d7b50eeef2aba3e69ee93b12 87 PIRSF PIRSF010606 1 87 3.4E-42 T 13-10-2018 IPR016571 Spore coat assembly protein CotJB RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 292 2.0E-22 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 SUPERFAMILY SSF53850 2 216 4.01E-82 T 13-10-2018 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 Gene3D G3DSA:3.40.190.10 4 209 4.0E-87 T 13-10-2018 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 Gene3D G3DSA:3.40.190.10 101 201 4.0E-87 T 13-10-2018 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 1.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 229 246 1.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 1.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 1.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 1.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 294 3.6E-111 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 211 1.0E-81 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 39.431 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 PIRSF PIRSF001438 1 310 4.9E-124 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 SUPERFAMILY SSF54782 220 309 3.92E-23 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 Gene3D G3DSA:3.30.160.40 220 304 2.7E-28 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08655 c9e32f3428ae2339bceab38a564f6f6a 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 230 246 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_17335 e0c20d32f76e983ffd2984faf6c1e22c 390 SUPERFAMILY SSF53383 21 384 1.65E-112 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_17335 e0c20d32f76e983ffd2984faf6c1e22c 390 Gene3D G3DSA:3.40.640.10 7 249 7.7E-88 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_17335 e0c20d32f76e983ffd2984faf6c1e22c 390 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 192 206 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_17335 e0c20d32f76e983ffd2984faf6c1e22c 390 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 9 382 2.0E-150 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_17335 e0c20d32f76e983ffd2984faf6c1e22c 390 PIRSF PIRSF001434 2 385 4.2E-145 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_17335 e0c20d32f76e983ffd2984faf6c1e22c 390 Gene3D G3DSA:3.90.1150.10 250 384 7.1E-47 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 332 346 7.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 7.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 360 7.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 7.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 301 404 7.1E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 SUPERFAMILY SSF55874 257 403 4.45E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 Gene3D G3DSA:3.30.565.10 253 409 7.7E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00290 7f7830dc7e99c4b4fcf2e43977469975 411 SMART SM00387 294 406 3.3E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_03265 2b4c7966bade79c45d60332442aed7f5 170 Pfam PF01047 MarR family 61 119 2.6E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03265 2b4c7966bade79c45d60332442aed7f5 170 Gene3D G3DSA:1.10.10.10 20 170 2.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03265 2b4c7966bade79c45d60332442aed7f5 170 SUPERFAMILY SSF46785 32 169 8.83E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03265 2b4c7966bade79c45d60332442aed7f5 170 SMART SM00347 54 154 3.6E-23 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03265 2b4c7966bade79c45d60332442aed7f5 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 144 164 6.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03265 2b4c7966bade79c45d60332442aed7f5 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 110 6.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03265 2b4c7966bade79c45d60332442aed7f5 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 130 6.4E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_07685 a9aba98bac74a6ffca2a6fe3b083a1ee 435 PIRSF PIRSF005353 1 434 5.4E-169 T 13-10-2018 IPR026033 Purine permease PbuG-like RA13_07685 a9aba98bac74a6ffca2a6fe3b083a1ee 435 Pfam PF00860 Permease family 13 395 1.2E-75 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RA13_06760 f58e47331e1e70daeaef4fad55238c65 128 SUPERFAMILY SSF141251 3 125 1.96E-55 T 13-10-2018 IPR038080 Kinase associated protein B superfamily RA13_06760 f58e47331e1e70daeaef4fad55238c65 128 Gene3D G3DSA:2.30.30.430 1 125 9.9E-54 T 13-10-2018 IPR038080 Kinase associated protein B superfamily RA13_06760 f58e47331e1e70daeaef4fad55238c65 128 Pfam PF08810 Kinase associated protein B 14 125 1.3E-50 T 13-10-2018 IPR014916 Kinase associated protein B RA13_06760 f58e47331e1e70daeaef4fad55238c65 128 SMART SM01298 14 126 4.0E-77 T 13-10-2018 IPR014916 Kinase associated protein B RA13_02210 91eb0d768fb7611540174ceeb99a7e62 95 Gene3D G3DSA:1.10.10.10 1 91 1.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_02210 91eb0d768fb7611540174ceeb99a7e62 95 SUPERFAMILY SSF46785 3 83 1.53E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_02210 91eb0d768fb7611540174ceeb99a7e62 95 Pfam PF01022 Bacterial regulatory protein, arsR family 10 54 1.9E-17 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_02210 91eb0d768fb7611540174ceeb99a7e62 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 37 52 2.9E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_02210 91eb0d768fb7611540174ceeb99a7e62 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 2.9E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_02210 91eb0d768fb7611540174ceeb99a7e62 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 2.9E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_02210 91eb0d768fb7611540174ceeb99a7e62 95 SMART SM00418 3 81 1.0E-28 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_05360 3f865cb1ef9b6ac2283fbd1f90293577 390 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 372 1.1E-95 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_05360 3f865cb1ef9b6ac2283fbd1f90293577 390 Gene3D G3DSA:3.40.640.10 1 251 8.4E-85 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_05360 3f865cb1ef9b6ac2283fbd1f90293577 390 Gene3D G3DSA:3.90.1150.10 253 386 1.1E-36 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_05360 3f865cb1ef9b6ac2283fbd1f90293577 390 PIRSF PIRSF000390 2 381 5.9E-110 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_05360 3f865cb1ef9b6ac2283fbd1f90293577 390 SUPERFAMILY SSF53383 12 377 7.66E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_09300 46b2a07ab100684f017e7cbe34672a85 286 Pfam PF00005 ABC transporter 19 158 2.2E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_09300 46b2a07ab100684f017e7cbe34672a85 286 SUPERFAMILY SSF52540 3 221 6.82E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09300 46b2a07ab100684f017e7cbe34672a85 286 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_09300 46b2a07ab100684f017e7cbe34672a85 286 SMART SM00382 28 207 1.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_09300 46b2a07ab100684f017e7cbe34672a85 286 Gene3D G3DSA:3.40.50.300 1 258 1.8E-45 T 13-10-2018 RA13_14800 9b01a71af658d75ee1bf84b3393358ee 199 Gene3D G3DSA:3.40.50.1950 1 199 9.5E-61 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RA13_14800 9b01a71af658d75ee1bf84b3393358ee 199 PIRSF PIRSF001390 1 196 1.7E-77 T 13-10-2018 IPR014214 Dipicolinic acid synthetase, subunit B RA13_14800 9b01a71af658d75ee1bf84b3393358ee 199 Pfam PF02441 Flavoprotein 6 167 3.2E-19 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RA13_14800 9b01a71af658d75ee1bf84b3393358ee 199 SUPERFAMILY SSF52507 6 193 6.54E-30 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RA13_14800 9b01a71af658d75ee1bf84b3393358ee 199 TIGRFAM TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit 6 192 1.5E-104 T 13-10-2018 IPR014214 Dipicolinic acid synthetase, subunit B RA13_07520 570301577f3611debab2c996ad5ef4a9 231 SMART SM00862 148 223 7.7E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_07520 570301577f3611debab2c996ad5ef4a9 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 222 4.3E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_07520 570301577f3611debab2c996ad5ef4a9 231 SUPERFAMILY SSF52172 3 127 4.13E-33 T 13-10-2018 IPR011006 CheY-like superfamily RA13_07520 570301577f3611debab2c996ad5ef4a9 231 Gene3D G3DSA:3.40.50.2300 3 125 4.3E-27 T 13-10-2018 RA13_07520 570301577f3611debab2c996ad5ef4a9 231 Pfam PF00072 Response regulator receiver domain 5 113 1.4E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_07520 570301577f3611debab2c996ad5ef4a9 231 Gene3D G3DSA:1.10.10.10 131 229 1.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07520 570301577f3611debab2c996ad5ef4a9 231 SUPERFAMILY SSF46894 133 222 5.39E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_07520 570301577f3611debab2c996ad5ef4a9 231 SMART SM00448 2 112 1.6E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_11115 9926baecd2e48da0a3a0b91a4eb5e2f0 360 Gene3D G3DSA:3.90.1150.10 20 349 5.8E-120 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_11115 9926baecd2e48da0a3a0b91a4eb5e2f0 360 Pfam PF00155 Aminotransferase class I and II 30 354 9.6E-66 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_11115 9926baecd2e48da0a3a0b91a4eb5e2f0 360 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 5 358 1.4E-121 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RA13_11115 9926baecd2e48da0a3a0b91a4eb5e2f0 360 Gene3D G3DSA:3.40.640.10 43 268 5.8E-120 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_11115 9926baecd2e48da0a3a0b91a4eb5e2f0 360 SUPERFAMILY SSF53383 12 360 4.13E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_11115 9926baecd2e48da0a3a0b91a4eb5e2f0 360 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 220 229 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RA13_11115 9926baecd2e48da0a3a0b91a4eb5e2f0 360 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 2 360 61.929 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 SUPERFAMILY SSF116726 552 610 1.07E-9 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 Pfam PF00999 Sodium/hydrogen exchanger family 10 391 5.5E-79 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 SUPERFAMILY SSF51735 404 516 4.53E-14 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 Pfam PF02080 TrkA-C domain 552 610 1.2E-10 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 Pfam PF02254 TrkA-N domain 406 515 2.0E-9 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 Gene3D G3DSA:3.30.70.1450 533 614 2.6E-19 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 Gene3D G3DSA:1.20.1530.20 2 400 2.4E-71 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RA13_17475 8345d1b0c986a5f004dd4f10c29f0968 614 Gene3D G3DSA:3.40.50.720 401 532 4.0E-14 T 13-10-2018 RA13_04010 e1490ddcbe48fa55c9f24d7c7dac0614 415 PIRSF PIRSF000412 1 414 1.4E-172 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RA13_04010 e1490ddcbe48fa55c9f24d7c7dac0614 415 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 218 234 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RA13_04010 e1490ddcbe48fa55c9f24d7c7dac0614 415 Pfam PF00464 Serine hydroxymethyltransferase 6 380 1.1E-184 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RA13_04010 e1490ddcbe48fa55c9f24d7c7dac0614 415 Gene3D G3DSA:3.40.640.10 33 283 1.9E-187 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_04010 e1490ddcbe48fa55c9f24d7c7dac0614 415 Gene3D G3DSA:3.90.1150.10 7 388 1.9E-187 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_04010 e1490ddcbe48fa55c9f24d7c7dac0614 415 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 3 411 53.522 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RA13_04010 e1490ddcbe48fa55c9f24d7c7dac0614 415 SUPERFAMILY SSF53383 2 411 3.3E-182 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_11155 658b29b71f930c10db2f27da52348d2c 255 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 182 249 2.0E-13 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_11155 658b29b71f930c10db2f27da52348d2c 255 SUPERFAMILY SSF81648 21 156 1.57E-29 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RA13_11155 658b29b71f930c10db2f27da52348d2c 255 SUPERFAMILY SSF46626 132 251 3.38E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RA13_11155 658b29b71f930c10db2f27da52348d2c 255 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 71 159 1.8E-8 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RA13_11155 658b29b71f930c10db2f27da52348d2c 255 Gene3D G3DSA:1.20.810.10 12 170 9.2E-25 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 RA13_11155 658b29b71f930c10db2f27da52348d2c 255 Gene3D G3DSA:1.10.760.10 182 253 1.4E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RA13_11155 658b29b71f930c10db2f27da52348d2c 255 PIRSF PIRSF036636 1 255 1.5E-152 T 13-10-2018 IPR012049 Menaquinone:cytochrome c reductase, cytochrome b/c subunit GO:0005506|GO:0009055|GO:0016021|GO:0020037 RA13_19780 3f4be9bc9835b8dd528e557ac3ad1d79 356 Pfam PF13039 Protein of unknown function (DUF3900) 2 254 3.6E-137 T 13-10-2018 IPR025006 Protein of unknown function DUF3900 RA13_19780 3f4be9bc9835b8dd528e557ac3ad1d79 356 Pfam PF13037 Domain of unknown function (DUF3898) 261 350 1.3E-41 T 13-10-2018 IPR025012 Domain of unknown function DUF3898 RA13_10775 076cd9af3b97b1789af526238809f588 363 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 98 3.0E-21 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RA13_10775 076cd9af3b97b1789af526238809f588 363 SUPERFAMILY SSF53597 143 354 1.51E-63 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RA13_10775 076cd9af3b97b1789af526238809f588 363 SUPERFAMILY SSF53927 1 144 4.61E-47 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RA13_10775 076cd9af3b97b1789af526238809f588 363 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 6 354 9.9E-151 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 RA13_10775 076cd9af3b97b1789af526238809f588 363 Gene3D G3DSA:3.40.140.10 1 134 2.4E-47 T 13-10-2018 RA13_10775 076cd9af3b97b1789af526238809f588 363 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 145 357 1.3E-84 T 13-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 RA13_10775 076cd9af3b97b1789af526238809f588 363 Gene3D G3DSA:3.40.430.10 135 361 4.7E-81 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RA13_10775 076cd9af3b97b1789af526238809f588 363 Pfam PF01872 RibD C-terminal domain 146 354 1.4E-65 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RA13_10775 076cd9af3b97b1789af526238809f588 363 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 49 87 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RA13_10775 076cd9af3b97b1789af526238809f588 363 PIRSF PIRSF006769 1 360 3.0E-131 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 RA13_18105 8c8bf741574e4a8845394929e39fdbff 484 Gene3D G3DSA:3.40.605.10 25 460 2.7E-149 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_18105 8c8bf741574e4a8845394929e39fdbff 484 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 3 483 69.061 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 RA13_18105 8c8bf741574e4a8845394929e39fdbff 484 Pfam PF00171 Aldehyde dehydrogenase family 17 479 5.5E-147 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_18105 8c8bf741574e4a8845394929e39fdbff 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_18105 8c8bf741574e4a8845394929e39fdbff 484 Gene3D G3DSA:3.40.309.10 254 452 2.7E-149 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_18105 8c8bf741574e4a8845394929e39fdbff 484 SUPERFAMILY SSF53720 4 483 2.75E-146 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_18105 8c8bf741574e4a8845394929e39fdbff 484 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 12 483 1.1E-177 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 525 5.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 506 5.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 458 472 5.3E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 SUPERFAMILY SSF55890 320 375 8.24E-12 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 SUPERFAMILY SSF55785 216 305 1.75E-6 T 13-10-2018 IPR035965 PAS domain superfamily RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 SUPERFAMILY SSF55874 398 526 1.05E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 Gene3D G3DSA:3.30.565.10 379 532 6.8E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 Gene3D G3DSA:3.30.450.20 200 312 3.2E-23 T 13-10-2018 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 SMART SM00387 417 528 8.8E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 319 370 4.1E-10 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 Gene3D G3DSA:3.30.450.20 32 170 1.4E-34 T 13-10-2018 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 SUPERFAMILY SSF103190 40 167 1.1E-29 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 422 526 5.0E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 Pfam PF17203 Single cache domain 3 40 162 2.6E-19 T 13-10-2018 IPR033463 Single cache domain 3 RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 SMART SM00091 213 278 1.7E-5 T 13-10-2018 IPR000014 PAS domain RA13_21140 ed715490a9c79a7103bad41a1203f8d2 535 Pfam PF13188 PAS domain 219 263 4.8E-4 T 13-10-2018 IPR000014 PAS domain RA13_16970 2c23553f1ac7799d8fa0cab2088c5b5b 146 ProDom PD033466 XKDJ PHAGE PHAGE-LIKE PBSX RELATED LIN1276 ELEMENT YQBJ 1 146 5.0E-66 T 13-10-2018 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 Pfam PF00202 Aminotransferase class-III 13 377 2.9E-129 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 SUPERFAMILY SSF53383 3 377 3.35E-123 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 Gene3D G3DSA:3.90.1150.10 13 366 6.2E-136 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 4 377 1.3E-161 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 PIRSF PIRSF000521 157 380 2.9E-36 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 PIRSF PIRSF000521 5 110 6.7E-5 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 PIRSF PIRSF000521 106 147 0.07 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 Gene3D G3DSA:3.40.640.10 47 287 6.2E-136 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 205 242 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_17705 38c91b633d6a3679e611152b5d81b3c9 385 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 3 380 69.367 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RA13_09260 283c96ff3f1cf5fe1d00cdcd9d07f501 148 Pfam PF04545 Sigma-70, region 4 55 105 7.7E-8 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_09260 283c96ff3f1cf5fe1d00cdcd9d07f501 148 Gene3D G3DSA:1.10.10.10 30 117 2.6E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09260 283c96ff3f1cf5fe1d00cdcd9d07f501 148 SUPERFAMILY SSF88659 21 107 1.02E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_18225 d062e2dcaf4e6b764c9f31c1487d210b 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 6.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_18225 d062e2dcaf4e6b764c9f31c1487d210b 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 6.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_18225 d062e2dcaf4e6b764c9f31c1487d210b 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 2.1E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_18225 d062e2dcaf4e6b764c9f31c1487d210b 190 SUPERFAMILY SSF48498 77 189 1.68E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_18225 d062e2dcaf4e6b764c9f31c1487d210b 190 Gene3D G3DSA:1.10.357.10 1 189 2.6E-37 T 13-10-2018 RA13_18225 d062e2dcaf4e6b764c9f31c1487d210b 190 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 51 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RA13_18225 d062e2dcaf4e6b764c9f31c1487d210b 190 SUPERFAMILY SSF46689 4 78 3.2E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 SUPERFAMILY SSF47384 246 325 1.31E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 Pfam PF00672 HAMP domain 196 242 4.1E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 SMART SM00388 260 327 3.5E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 SMART SM00304 193 245 2.2E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 Pfam PF00512 His Kinase A (phospho-acceptor) domain 262 325 1.3E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 Gene3D G3DSA:3.30.565.10 330 481 7.1E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 SMART SM00387 370 480 3.9E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 373 475 1.3E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 435 1.5E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 1.5E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 SUPERFAMILY SSF55874 330 476 6.16E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 Gene3D G3DSA:1.20.1480.50 160 251 6.2E-16 T 13-10-2018 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 Gene3D G3DSA:1.10.287.130 252 325 2.6E-18 T 13-10-2018 RA13_20850 0d2d99ab5932782bfb4e46cbb8ac7be9 483 SUPERFAMILY SSF158472 193 244 5.49E-11 T 13-10-2018 RA13_16020 32f5f7bfcb28def4ca4f8557ee3d8441 377 Gene3D G3DSA:2.40.50.100 61 218 6.6E-40 T 13-10-2018 RA13_16020 32f5f7bfcb28def4ca4f8557ee3d8441 377 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 376 3.2E-28 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RA13_16020 32f5f7bfcb28def4ca4f8557ee3d8441 377 Gene3D G3DSA:1.10.287.470 96 183 6.6E-40 T 13-10-2018 RA13_16020 32f5f7bfcb28def4ca4f8557ee3d8441 377 Gene3D G3DSA:2.40.420.20 47 362 6.6E-40 T 13-10-2018 RA13_16020 32f5f7bfcb28def4ca4f8557ee3d8441 377 Gene3D G3DSA:2.40.30.170 50 305 6.6E-40 T 13-10-2018 RA13_16020 32f5f7bfcb28def4ca4f8557ee3d8441 377 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 259 3.3E-10 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RA13_11565 e9071ad283e3fffb835af162e6627efa 336 Pfam PF00158 Sigma-54 interaction domain 13 159 2.0E-33 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RA13_11565 e9071ad283e3fffb835af162e6627efa 336 SUPERFAMILY SSF52540 13 230 1.1E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11565 e9071ad283e3fffb835af162e6627efa 336 Gene3D G3DSA:1.10.10.10 249 336 3.9E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_11565 e9071ad283e3fffb835af162e6627efa 336 Gene3D G3DSA:3.40.50.300 11 164 1.3E-41 T 13-10-2018 RA13_11565 e9071ad283e3fffb835af162e6627efa 336 Pfam PF08461 Ribonuclease R winged-helix domain 265 327 2.7E-5 T 13-10-2018 IPR013668 Ribonuclease R winged-helix domain RA13_11565 e9071ad283e3fffb835af162e6627efa 336 Gene3D G3DSA:1.10.8.60 165 237 4.9E-14 T 13-10-2018 RA13_11565 e9071ad283e3fffb835af162e6627efa 336 SMART SM00382 33 157 1.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 173.673 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 3.7E-33 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 Gene3D G3DSA:3.40.50.300 19 182 1.1E-39 T 13-10-2018 RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 Gene3D G3DSA:1.10.8.60 183 257 6.8E-31 T 13-10-2018 RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 SUPERFAMILY SSF46785 257 331 9.93E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 SUPERFAMILY SSF52540 21 255 2.85E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 252 325 1.0E-35 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 25 328 2.2E-151 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 Gene3D G3DSA:1.10.10.10 258 334 7.4E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 5 235 9.6E-119 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RA13_08915 2495188c683f84b4e6e26689d1e8d849 334 SMART SM00382 52 183 3.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04710 adc45775c8d7cc786628089ff5c9d6ac 706 Pfam PF08486 Stage II sporulation protein 416 492 9.4E-22 T 13-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal RA13_04710 adc45775c8d7cc786628089ff5c9d6ac 706 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 415 704 3.2E-77 T 13-10-2018 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 RA13_04710 adc45775c8d7cc786628089ff5c9d6ac 706 Gene3D G3DSA:3.40.50.12090 87 181 1.8E-6 T 13-10-2018 RA13_04710 adc45775c8d7cc786628089ff5c9d6ac 706 Pfam PF04122 Putative cell wall binding repeat 2 64 150 3.6E-13 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 RA13_04710 adc45775c8d7cc786628089ff5c9d6ac 706 Pfam PF04122 Putative cell wall binding repeat 2 254 340 1.5E-10 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 RA13_04710 adc45775c8d7cc786628089ff5c9d6ac 706 Pfam PF04122 Putative cell wall binding repeat 2 163 242 1.3E-18 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 Pfam PF03123 CAT RNA binding domain 13 68 6.4E-21 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 SUPERFAMILY SSF63520 186 283 1.83E-22 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 SUPERFAMILY SSF63520 66 177 2.75E-31 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 Gene3D G3DSA:2.30.24.10 1 77 2.1E-30 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 SUPERFAMILY SSF50151 12 64 3.4E-15 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 SMART SM01061 12 70 2.0E-23 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 Gene3D G3DSA:1.20.890.100 177 232 2.8E-25 T 13-10-2018 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 ProSitePatterns PS00654 PRD domain signature. 109 121 - T 13-10-2018 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 Pfam PF00874 PRD domain 193 282 4.2E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 Pfam PF00874 PRD domain 87 174 2.1E-26 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 Gene3D G3DSA:1.10.1790.10 78 176 6.5E-36 T 13-10-2018 RA13_16255 0c22d9ae5158d19e1802dd229313f69b 288 Gene3D G3DSA:1.20.58.1950 233 285 1.9E-26 T 13-10-2018 RA13_06150 484ea4157ddd9b05002cb53883222f00 262 SUPERFAMILY SSF46785 23 102 1.52E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_06150 484ea4157ddd9b05002cb53883222f00 262 SMART SM00866 114 254 1.5E-26 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_06150 484ea4157ddd9b05002cb53883222f00 262 SMART SM00345 34 93 4.0E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_06150 484ea4157ddd9b05002cb53883222f00 262 Pfam PF07702 UTRA domain 115 253 1.9E-31 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_06150 484ea4157ddd9b05002cb53883222f00 262 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 67 5.9E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_06150 484ea4157ddd9b05002cb53883222f00 262 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 67 83 5.9E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_06150 484ea4157ddd9b05002cb53883222f00 262 SUPERFAMILY SSF64288 81 258 9.71E-43 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_06150 484ea4157ddd9b05002cb53883222f00 262 Gene3D G3DSA:3.40.1410.10 98 262 5.3E-38 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_06150 484ea4157ddd9b05002cb53883222f00 262 Gene3D G3DSA:1.10.10.10 29 97 2.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_06150 484ea4157ddd9b05002cb53883222f00 262 Pfam PF00392 Bacterial regulatory proteins, gntR family 31 93 1.1E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_04735 d9ee926fbe327bef8a7c7097cd6397cc 401 SUPERFAMILY SSF53756 1 387 1.88E-66 T 13-10-2018 RA13_04735 d9ee926fbe327bef8a7c7097cd6397cc 401 Gene3D G3DSA:3.40.50.2000 210 364 7.5E-31 T 13-10-2018 RA13_04735 d9ee926fbe327bef8a7c7097cd6397cc 401 Pfam PF13439 Glycosyltransferase Family 4 23 196 2.0E-14 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RA13_04735 d9ee926fbe327bef8a7c7097cd6397cc 401 Pfam PF00534 Glycosyl transferases group 1 207 351 7.0E-28 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_04735 d9ee926fbe327bef8a7c7097cd6397cc 401 Gene3D G3DSA:3.40.50.2000 1 209 8.5E-26 T 13-10-2018 RA13_19415 09e80616998438c0f6bbbeeb54397429 319 SUPERFAMILY SSF143865 20 249 2.35E-63 T 13-10-2018 RA13_19415 09e80616998438c0f6bbbeeb54397429 319 Pfam PF01544 CorA-like Mg2+ transporter protein 28 310 3.8E-77 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RA13_19415 09e80616998438c0f6bbbeeb54397429 319 Gene3D G3DSA:1.20.58.340 239 315 1.3E-31 T 13-10-2018 RA13_19415 09e80616998438c0f6bbbeeb54397429 319 Gene3D G3DSA:1.20.58.340 126 237 1.2E-29 T 13-10-2018 RA13_19415 09e80616998438c0f6bbbeeb54397429 319 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 4 315 6.1E-121 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 RA13_19415 09e80616998438c0f6bbbeeb54397429 319 SUPERFAMILY SSF144083 250 312 9.29E-22 T 13-10-2018 RA13_19415 09e80616998438c0f6bbbeeb54397429 319 Gene3D G3DSA:3.30.460.20 3 125 2.0E-28 T 13-10-2018 RA13_09160 f7fccb2504c73aec91483f449827ed19 213 SMART SM00650 37 140 0.0079 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RA13_09160 f7fccb2504c73aec91483f449827ed19 213 Gene3D G3DSA:3.40.50.150 24 213 5.7E-43 T 13-10-2018 RA13_09160 f7fccb2504c73aec91483f449827ed19 213 SUPERFAMILY SSF53335 7 204 4.33E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_09160 f7fccb2504c73aec91483f449827ed19 213 Hamap MF_02100 Uncharacterized methyltransferase . 2 213 45.024 T 13-10-2018 IPR023553 Uncharacterised methyltransferase, YrrT GO:0008168 RA13_09160 f7fccb2504c73aec91483f449827ed19 213 Pfam PF13649 Methyltransferase domain 49 137 6.4E-12 T 13-10-2018 RA13_07955 4865a2a338f1066732695df043d11b29 381 SUPERFAMILY SSF53383 1 374 5.56E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_07955 4865a2a338f1066732695df043d11b29 381 Gene3D G3DSA:3.90.1150.10 2 369 1.8E-124 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_07955 4865a2a338f1066732695df043d11b29 381 Gene3D G3DSA:1.10.260.50 13 279 1.8E-124 T 13-10-2018 RA13_07955 4865a2a338f1066732695df043d11b29 381 Pfam PF00266 Aminotransferase class-V 2 363 1.9E-73 T 13-10-2018 IPR000192 Aminotransferase class V domain RA13_07955 4865a2a338f1066732695df043d11b29 381 PIRSF PIRSF005572 1 380 1.1E-104 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RA13_07955 4865a2a338f1066732695df043d11b29 381 Gene3D G3DSA:3.40.640.10 59 235 1.8E-124 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 ProSitePatterns PS01229 Hypothetical cof family signature 2. 231 253 - T 13-10-2018 RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 ProSitePatterns PS01228 Hypothetical cof family signature 1. 3 14 - T 13-10-2018 RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 SUPERFAMILY SSF56784 2 281 6.67E-68 T 13-10-2018 IPR036412 HAD-like superfamily RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 3 250 4.9E-28 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 3 277 4.8E-58 T 13-10-2018 IPR000150 Cof family GO:0016787 RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 Gene3D G3DSA:3.30.1240.10 79 206 2.4E-83 T 13-10-2018 RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 Gene3D G3DSA:3.40.50.1000 2 274 2.4E-83 T 13-10-2018 IPR023214 HAD superfamily RA13_04610 825e84bc1df22b067bb9c5aba1e7009b 285 Pfam PF08282 haloacid dehalogenase-like hydrolase 4 277 4.7E-64 T 13-10-2018 RA13_06380 56980fb85f95afa885496fee56849f65 78 Gene3D G3DSA:3.30.300.130 1 78 1.8E-32 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RA13_06380 56980fb85f95afa885496fee56849f65 78 Pfam PF01106 NifU-like domain 10 75 3.8E-28 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RA13_06380 56980fb85f95afa885496fee56849f65 78 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 14 65 9.0E-23 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RA13_06380 56980fb85f95afa885496fee56849f65 78 SUPERFAMILY SSF117916 2 77 1.14E-26 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RA13_00415 93c0a0b437582931ba398b117317fc14 725 Gene3D G3DSA:3.20.20.80 283 501 2.0E-56 T 13-10-2018 RA13_00415 93c0a0b437582931ba398b117317fc14 725 Gene3D G3DSA:1.10.101.10 204 282 1.5E-7 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_00415 93c0a0b437582931ba398b117317fc14 725 Gene3D G3DSA:1.10.101.10 79 140 7.0E-9 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_00415 93c0a0b437582931ba398b117317fc14 725 SUPERFAMILY SSF47090 77 137 8.48E-12 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_00415 93c0a0b437582931ba398b117317fc14 725 SUPERFAMILY SSF47090 207 276 6.75E-13 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_00415 93c0a0b437582931ba398b117317fc14 725 SUPERFAMILY SSF51445 287 479 3.58E-44 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_00415 93c0a0b437582931ba398b117317fc14 725 Pfam PF08924 Domain of unknown function (DUF1906) 298 432 1.4E-38 T 13-10-2018 IPR015020 Protein of unknown function DUF1906 RA13_00415 93c0a0b437582931ba398b117317fc14 725 Pfam PF01471 Putative peptidoglycan binding domain 222 275 1.2E-9 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_00415 93c0a0b437582931ba398b117317fc14 725 Pfam PF01471 Putative peptidoglycan binding domain 83 133 6.5E-9 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_10750 93d713b1c4f38a5dce7b7ff8b7909900 322 Gene3D G3DSA:3.20.20.150 1 315 9.0E-71 T 13-10-2018 RA13_10750 93d713b1c4f38a5dce7b7ff8b7909900 322 SUPERFAMILY SSF51658 1 311 4.98E-51 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_10750 93d713b1c4f38a5dce7b7ff8b7909900 322 Pfam PF01261 Xylose isomerase-like TIM barrel 19 235 3.0E-32 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RA13_10750 93d713b1c4f38a5dce7b7ff8b7909900 322 Pfam PF07582 AP endonuclease family 2 C terminus 268 321 2.4E-22 T 13-10-2018 IPR011418 AP endonuclease, family 2, C-terminal RA13_13745 ec453547a7d50b4f8e1ff9b0d42340e1 165 Pfam PF02223 Thymidylate kinase 50 136 3.3E-6 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RA13_13745 ec453547a7d50b4f8e1ff9b0d42340e1 165 Gene3D G3DSA:3.40.50.300 1 163 8.4E-49 T 13-10-2018 RA13_13745 ec453547a7d50b4f8e1ff9b0d42340e1 165 SUPERFAMILY SSF52540 3 160 9.77E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 PIRSF PIRSF006250 1 277 4.9E-104 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 10 274 1.0E-98 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 18 106 1.2E-21 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 SUPERFAMILY SSF54675 3 107 2.55E-26 T 13-10-2018 RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 Gene3D G3DSA:3.20.20.70 122 264 6.7E-101 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 SUPERFAMILY SSF51690 108 274 6.67E-58 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 108 273 3.1E-63 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 RA13_08805 1cb8e474e4b9da8f7ab11207b3448ee2 286 Gene3D G3DSA:3.90.1170.20 13 272 6.7E-101 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 RA13_15790 724d59f45356b5979300ebbb779407b9 442 Gene3D G3DSA:3.40.50.1010 2 149 8.9E-21 T 13-10-2018 RA13_15790 724d59f45356b5979300ebbb779407b9 442 Pfam PF13638 PIN domain 5 147 9.7E-34 T 13-10-2018 IPR002716 PIN domain RA13_15790 724d59f45356b5979300ebbb779407b9 442 SMART SM00670 3 135 2.2E-25 T 13-10-2018 IPR002716 PIN domain RA13_15790 724d59f45356b5979300ebbb779407b9 442 SUPERFAMILY SSF88723 4 149 7.46E-11 T 13-10-2018 IPR029060 PIN-like domain superfamily RA13_15790 724d59f45356b5979300ebbb779407b9 442 Pfam PF02562 PhoH-like protein 233 426 3.6E-53 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 RA13_15790 724d59f45356b5979300ebbb779407b9 442 SUPERFAMILY SSF52540 232 419 4.89E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15790 724d59f45356b5979300ebbb779407b9 442 Gene3D G3DSA:3.40.50.300 231 441 1.1E-69 T 13-10-2018 RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 SUPERFAMILY SSF52540 323 570 2.49E-96 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 Gene3D G3DSA:3.40.50.300 324 573 1.1E-93 T 13-10-2018 RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 SMART SM00382 360 546 1.7E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 Pfam PF00005 ABC transporter 351 500 6.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 Gene3D G3DSA:1.20.1560.10 1 316 3.4E-108 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 Pfam PF00664 ABC transporter transmembrane region 13 282 8.3E-48 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19115 0cebaa649e4432ceb08ab1ca615cc74c 573 SUPERFAMILY SSF90123 2 320 2.35E-81 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 Gene3D G3DSA:3.30.70.1560 129 213 1.2E-55 T 13-10-2018 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 SUPERFAMILY SSF55120 45 234 9.54E-41 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 Gene3D G3DSA:3.30.70.580 62 231 1.2E-55 T 13-10-2018 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 Pfam PF00849 RNA pseudouridylate synthase 62 195 5.3E-18 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 228 6.2E-45 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 Gene3D G3DSA:3.10.290.10 1 59 7.8E-18 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 SMART SM00363 1 59 1.7E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 Pfam PF01479 S4 domain 1 44 3.2E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 SUPERFAMILY SSF55174 1 59 1.37E-12 T 13-10-2018 RA13_07675 b45a4f76545d39ef55ad68a3610bebc1 239 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RA13_04520 0d33d6920636e7eda6ebb2c61f0f4484 255 PIRSF PIRSF001332 4 252 2.5E-99 T 13-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 RA13_04520 0d33d6920636e7eda6ebb2c61f0f4484 255 Gene3D G3DSA:3.30.1330.80 22 238 2.8E-81 T 13-10-2018 RA13_04520 0d33d6920636e7eda6ebb2c61f0f4484 255 SUPERFAMILY SSF117856 21 251 1.62E-85 T 13-10-2018 RA13_04520 0d33d6920636e7eda6ebb2c61f0f4484 255 Gene3D G3DSA:3.30.1330.80 97 219 2.8E-81 T 13-10-2018 RA13_04520 0d33d6920636e7eda6ebb2c61f0f4484 255 Pfam PF03306 Alpha-acetolactate decarboxylase 22 239 8.0E-84 T 13-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 RA13_04520 0d33d6920636e7eda6ebb2c61f0f4484 255 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 20 251 7.2E-108 T 13-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 540 2.5E-129 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 Gene3D G3DSA:3.50.30.10 6 234 5.4E-81 T 13-10-2018 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 Pfam PF05524 PEP-utilising enzyme, N-terminal 5 126 2.6E-34 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 Gene3D G3DSA:3.20.20.60 235 569 1.9E-127 T 13-10-2018 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 SUPERFAMILY SSF52009 125 247 4.84E-37 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 PIRSF PIRSF000732 1 571 3.2E-228 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 Pfam PF00391 PEP-utilising enzyme, mobile domain 153 225 1.5E-23 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 2.2E-32 T 13-10-2018 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 2.2E-32 T 13-10-2018 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 2.2E-32 T 13-10-2018 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 2.2E-32 T 13-10-2018 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 SUPERFAMILY SSF47831 23 143 6.67E-37 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 SUPERFAMILY SSF51621 249 547 2.88E-113 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 4 566 7.4E-275 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RA13_16240 699ff0ad9435981e2f141f28fdc50908 571 Gene3D G3DSA:1.10.274.10 23 146 5.4E-81 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 Gene3D G3DSA:3.40.50.720 91 280 7.0E-114 T 13-10-2018 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 278 1.7E-61 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 218 234 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 310 1.2E-33 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 189 211 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 141 168 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 SUPERFAMILY SSF52283 14 126 4.73E-33 T 13-10-2018 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 SUPERFAMILY SSF55021 440 522 1.87E-18 T 13-10-2018 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 Gene3D G3DSA:3.30.70.260 451 525 7.5E-21 T 13-10-2018 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 SUPERFAMILY SSF143548 316 446 3.92E-34 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 Pfam PF01842 ACT domain 452 514 2.4E-9 T 13-10-2018 IPR002912 ACT domain RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 SUPERFAMILY SSF51735 95 279 2.1E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 Gene3D G3DSA:3.30.1330.90 317 450 1.2E-34 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 Gene3D G3DSA:3.40.50.720 4 289 7.0E-114 T 13-10-2018 RA13_10885 0785e9e1bf1414cd72ef04eb5e2c166c 525 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 3 524 1.0E-225 T 13-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 RA13_02855 3b12517a243d66f0343f1f36c6e0494d 243 Pfam PF10014 2OG-Fe dioxygenase 50 239 5.0E-37 T 13-10-2018 IPR018724 2OG-Fe dioxygenase RA13_02855 3b12517a243d66f0343f1f36c6e0494d 243 Gene3D G3DSA:2.60.120.620 11 243 3.0E-34 T 13-10-2018 RA13_05495 04d823289bda4b421d7b404a80562a05 417 SUPERFAMILY SSF53383 44 411 4.79E-48 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_05495 04d823289bda4b421d7b404a80562a05 417 PIRSF PIRSF000390 36 415 7.0E-40 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_05495 04d823289bda4b421d7b404a80562a05 417 Gene3D G3DSA:3.40.640.10 31 261 2.5E-41 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_05495 04d823289bda4b421d7b404a80562a05 417 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 55 407 1.9E-42 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_05495 04d823289bda4b421d7b404a80562a05 417 Gene3D G3DSA:3.90.1150.10 283 417 2.6E-12 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_20235 31b9abbe3d94ec420d0a57e413371bb1 320 Gene3D G3DSA:1.10.8.300 202 310 2.4E-35 T 13-10-2018 RA13_20235 31b9abbe3d94ec420d0a57e413371bb1 320 SUPERFAMILY SSF52540 8 285 6.99E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20235 31b9abbe3d94ec420d0a57e413371bb1 320 PIRSF PIRSF002849 2 315 1.8E-133 T 13-10-2018 RA13_20235 31b9abbe3d94ec420d0a57e413371bb1 320 Gene3D G3DSA:3.40.50.300 22 188 7.7E-47 T 13-10-2018 RA13_20235 31b9abbe3d94ec420d0a57e413371bb1 320 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 41 171 4.6E-65 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 RA13_11740 5fa1ddce807ec0c36935d97c62333364 436 Pfam PF07687 Peptidase dimerisation domain 203 315 6.8E-19 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RA13_11740 5fa1ddce807ec0c36935d97c62333364 436 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 22 411 8.3E-135 T 13-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase RA13_11740 5fa1ddce807ec0c36935d97c62333364 436 Gene3D G3DSA:3.30.70.360 206 332 1.8E-137 T 13-10-2018 RA13_11740 5fa1ddce807ec0c36935d97c62333364 436 SUPERFAMILY SSF53187 8 421 2.86E-60 T 13-10-2018 RA13_11740 5fa1ddce807ec0c36935d97c62333364 436 Pfam PF01546 Peptidase family M20/M25/M40 99 417 9.0E-40 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_11740 5fa1ddce807ec0c36935d97c62333364 436 SUPERFAMILY SSF55031 205 313 8.82E-15 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_11740 5fa1ddce807ec0c36935d97c62333364 436 Gene3D G3DSA:3.40.630.10 31 421 1.8E-137 T 13-10-2018 RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 67 2.4E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 Pfam PF07702 UTRA domain 88 225 4.5E-37 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 SMART SM00866 87 226 3.3E-35 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 Gene3D G3DSA:3.40.1410.10 77 233 7.2E-44 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 2.0E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 2.0E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 Gene3D G3DSA:1.10.10.10 1 68 9.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 SUPERFAMILY SSF46785 4 76 1.25E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 SMART SM00345 8 67 4.3E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00325 a0d71110bf1609cf553b6672a8cc64c9 235 SUPERFAMILY SSF64288 55 230 4.24E-46 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_08020 f82e4359a373f9611a8428d1e0ca6ad6 171 PIRSF PIRSF006443 1 170 3.0E-67 T 13-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 RA13_08020 f82e4359a373f9611a8428d1e0ca6ad6 171 SMART SM00852 17 162 1.0E-25 T 13-10-2018 IPR001453 MoaB/Mog domain RA13_08020 f82e4359a373f9611a8428d1e0ca6ad6 171 SUPERFAMILY SSF53218 9 167 2.75E-40 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RA13_08020 f82e4359a373f9611a8428d1e0ca6ad6 171 Pfam PF00994 Probable molybdopterin binding domain 18 161 3.7E-35 T 13-10-2018 IPR001453 MoaB/Mog domain RA13_08020 f82e4359a373f9611a8428d1e0ca6ad6 171 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 14 157 1.2E-35 T 13-10-2018 IPR001453 MoaB/Mog domain RA13_08020 f82e4359a373f9611a8428d1e0ca6ad6 171 Gene3D G3DSA:3.40.980.10 1 169 3.4E-48 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily RA13_08020 f82e4359a373f9611a8428d1e0ca6ad6 171 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 75 88 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 RA13_09215 891509dc3082e9809e02f8a46bb758ed 191 Gene3D G3DSA:3.40.50.150 8 188 1.5E-22 T 13-10-2018 RA13_09215 891509dc3082e9809e02f8a46bb758ed 191 Pfam PF08241 Methyltransferase domain 48 147 3.8E-12 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RA13_09215 891509dc3082e9809e02f8a46bb758ed 191 SUPERFAMILY SSF53335 24 185 1.35E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SUPERFAMILY SSF48452 39 203 3.98E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SMART SM00028 272 305 270.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SMART SM00028 101 134 400.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SMART SM00028 340 373 12.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SMART SM00028 374 407 130.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SMART SM00028 171 204 0.015 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SMART SM00028 238 271 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SMART SM00028 135 168 27.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 Gene3D G3DSA:1.25.40.10 170 417 1.7E-36 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 Pfam PF13429 Tetratricopeptide repeat 240 402 2.0E-9 T 13-10-2018 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SUPERFAMILY SSF48452 172 331 1.52E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 Pfam PF13432 Tetratricopeptide repeat 139 202 2.9E-5 T 13-10-2018 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 Gene3D G3DSA:1.25.40.10 32 103 1.9E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 Gene3D G3DSA:1.25.40.10 104 168 7.1E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 SUPERFAMILY SSF48452 309 418 4.43E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11130 de7a556d8daf8deb95c2f605b72217a2 423 Pfam PF14559 Tetratricopeptide repeat 47 110 1.3E-6 T 13-10-2018 RA13_01380 ebb4449e855695fc2099879dbe9b8250 262 Gene3D G3DSA:3.40.50.410 16 257 1.2E-57 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_01380 ebb4449e855695fc2099879dbe9b8250 262 SUPERFAMILY SSF53300 11 88 1.63E-10 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_01380 ebb4449e855695fc2099879dbe9b8250 262 SUPERFAMILY SSF53300 150 243 5.04E-10 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_01380 ebb4449e855695fc2099879dbe9b8250 262 Pfam PF00092 von Willebrand factor type A domain 10 96 1.5E-6 T 13-10-2018 IPR002035 von Willebrand factor, type A RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 Hamap MF_01685 Ferredoxin--NADP reductase. 7 328 44.333 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 293 1.4E-27 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 4.9E-16 T 13-10-2018 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 4.9E-16 T 13-10-2018 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 4.9E-16 T 13-10-2018 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 Gene3D G3DSA:3.50.50.60 7 304 2.5E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 66 76 2.8E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 2.8E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 113 121 2.8E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 203 219 2.8E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 152 176 2.8E-19 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 SUPERFAMILY SSF51905 8 314 8.81E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06430 2477d5d4889fc102fd23edfd99369ca1 333 Gene3D G3DSA:3.50.50.60 128 246 2.5E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_02225 2cba8ce490b986148477d123e9c19b47 467 Pfam PF00324 Amino acid permease 19 460 3.6E-119 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_02225 2cba8ce490b986148477d123e9c19b47 467 PIRSF PIRSF006060 1 466 5.7E-87 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_02225 2cba8ce490b986148477d123e9c19b47 467 Gene3D G3DSA:1.20.1740.10 9 466 4.9E-73 T 13-10-2018 RA13_02225 2cba8ce490b986148477d123e9c19b47 467 ProSitePatterns PS00218 Amino acid permeases signature. 44 75 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RA13_05145 424101cace0bd4f9999bd8b4cafba2a4 253 Pfam PF00797 N-acetyltransferase 22 250 1.4E-53 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RA13_05145 424101cace0bd4f9999bd8b4cafba2a4 253 Gene3D G3DSA:3.30.2140.20 1 253 1.1E-70 T 13-10-2018 RA13_05145 424101cace0bd4f9999bd8b4cafba2a4 253 SUPERFAMILY SSF54001 4 250 4.17E-59 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_05145 424101cace0bd4f9999bd8b4cafba2a4 253 PRINTS PR01543 Arylamine N-acetyltransferase signature 101 126 5.1E-7 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RA13_05145 424101cace0bd4f9999bd8b4cafba2a4 253 PRINTS PR01543 Arylamine N-acetyltransferase signature 44 67 5.1E-7 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RA13_05145 424101cace0bd4f9999bd8b4cafba2a4 253 PRINTS PR01543 Arylamine N-acetyltransferase signature 68 90 5.1E-7 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 Gene3D G3DSA:3.40.50.300 68 232 2.6E-50 T 13-10-2018 RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 SUPERFAMILY SSF50249 1 68 2.23E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 SUPERFAMILY SSF52540 70 296 1.65E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 Gene3D G3DSA:2.40.50.140 1 67 1.7E-28 T 13-10-2018 RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 Pfam PF03193 RsgA GTPase 65 232 3.0E-63 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 Pfam PF16745 RsgA N-terminal domain 3 62 2.8E-23 T 13-10-2018 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 2 297 38.69 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 45 291 7.5E-98 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RA13_15290 9df85b12162ae393bd313ae7ea0a6ea0 300 Gene3D G3DSA:1.10.40.50 233 300 7.2E-23 T 13-10-2018 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 SUPERFAMILY SSF69189 300 389 1.73E-20 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 SUPERFAMILY SSF56601 12 308 4.81E-78 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 286 5.9E-86 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 Gene3D G3DSA:2.60.410.10 309 411 9.8E-22 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 Gene3D G3DSA:3.40.710.10 28 308 9.9E-92 T 13-10-2018 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 308 411 2.1E-22 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 SMART SM00936 308 411 5.3E-23 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 123 140 1.0E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 150 163 1.0E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_01700 b3422be0f7520538e543dfa527a3a9e4 441 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 1.0E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_16980 f9a4e359ab3afa864ef3de01532d0f22 118 Pfam PF12206 Domain of unknown function (DUF3599) 1 116 6.6E-52 T 13-10-2018 IPR024556 Protein of unknown function DUF3599 RA13_16980 f9a4e359ab3afa864ef3de01532d0f22 118 Gene3D G3DSA:2.40.10.370 1 118 1.4E-48 T 13-10-2018 IPR038667 XkdH-like superfamily RA13_16980 f9a4e359ab3afa864ef3de01532d0f22 118 ProDom PD031312 YQBH LIN1274 PHAGE XKDH PHAGE-LIKE PBSX RELATED ELEMENT 1 118 2.0E-48 T 13-10-2018 IPR024556 Protein of unknown function DUF3599 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 1469 1577 2.2E-13 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 2961 3074 7.0E-12 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 4463 4578 6.0E-14 T 13-10-2018 IPR032821 Ketoacyl-synthetase, C-terminal extension Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF14765 Polyketide synthase dehydratase 4710 4991 9.5E-65 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF14765 Polyketide synthase dehydratase 1702 1993 1.4E-45 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF14765 Polyketide synthase dehydratase 3210 3494 1.5E-63 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1091 1340 4.4E-62 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4081 4327 9.1E-87 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2577 2825 6.6E-92 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 ProSitePatterns PS00455 Putative AMP-binding domain signature. 620 631 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF51735 2174 2413 2.57E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00826 1702 1866 4.6E-6 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00826 4710 4875 2.1E-11 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00826 3210 3376 7.3E-20 T 13-10-2018 IPR020807 Polyketide synthase, dehydratase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF51735 5221 5440 1.2E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1013 1028 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00668 Condensation domain 8 453 5.6E-108 T 13-10-2018 IPR001242 Condensation domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 4240 4256 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.40.50.12780 466 874 1.4E-135 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF53901 1088 1515 3.74E-74 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.40.50.720 5003 5472 2.8E-80 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 2833 2957 3.2E-39 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 1348 1466 7.2E-39 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 4335 4457 1.8E-38 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.40.47.10 4083 4686 4.4E-241 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF08659 KR domain 3682 3867 1.3E-53 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF08659 KR domain 5222 5400 6.1E-41 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF08659 KR domain 2178 2363 1.2E-52 T 13-10-2018 IPR013968 Polyketide synthase, ketoreductase domain Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF47336 3954 4094 6.41E-19 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM01294 3958 4024 8.9E-8 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM01294 2454 2520 1.7E-5 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.40.50.720 3501 3924 1.8E-145 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.40.50.720 1998 2420 5.8E-148 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF52777 190 437 5.34E-51 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF51735 3676 3919 1.26E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF47336 984 1105 7.07E-16 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF56801 431 1002 5.49E-152 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF53901 2574 3011 4.26E-91 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 495 904 1.8E-128 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 2738 2754 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF13193 AMP-binding enzyme C-terminal domain 890 962 4.8E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00825 Beta-ketoacyl synthase 1093 1519 1.8E-141 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00825 Beta-ketoacyl synthase 2579 3016 2.3E-196 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00825 Beta-ketoacyl synthase 4083 4518 1.4E-182 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.40.47.10 2579 3183 8.0E-249 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00823 Phosphopantetheine attachment site 992 1058 9.8E-4 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00823 Phosphopantetheine attachment site 3957 4028 5.2E-17 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00823 Phosphopantetheine attachment site 2453 2524 1.1E-13 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF47336 2451 2590 1.44E-13 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:1.10.1200.10 2448 2529 1.7E-19 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:1.10.1200.10 3951 4032 7.2E-23 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.30.70.3050 1576 1673 8.8E-200 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00550 Phosphopantetheine attachment site 3959 4024 7.5E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00550 Phosphopantetheine attachment site 990 1054 1.8E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00550 Phosphopantetheine attachment site 2455 2520 1.0E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.30.559.10 9 383 1.4E-111 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.30.559.30 187 438 1.4E-111 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.30.70.3050 4571 4667 4.4E-241 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.30.70.3050 3068 3164 8.0E-249 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF51735 5013 5208 4.73E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.30.300.30 875 978 1.4E-29 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF52777 10 183 1.78E-37 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:1.10.1200.10 979 1062 2.9E-19 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Pfam PF00501 AMP-binding enzyme 474 881 1.8E-108 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SUPERFAMILY SSF53901 4078 4512 2.88E-88 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2178 2364 8.7E-45 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3682 3868 4.5E-48 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5222 5402 6.5E-36 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.10.129.110 4716 4996 1.1E-83 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.10.129.110 1708 1994 2.7E-66 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.10.129.110 3216 3500 1.2E-81 T 13-10-2018 RA13_14570 e4f961245226808bdcb31d46bfdbabd9 5491 Gene3D G3DSA:3.40.47.10 1093 1684 8.8E-200 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_12640 289d717532a65a63903bfc26cb18e083 296 Gene3D G3DSA:3.90.550.10 1 291 1.3E-89 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_12640 289d717532a65a63903bfc26cb18e083 296 SUPERFAMILY SSF53448 1 268 4.38E-66 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_12640 289d717532a65a63903bfc26cb18e083 296 Pfam PF00483 Nucleotidyl transferase 6 265 2.5E-33 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RA13_12640 289d717532a65a63903bfc26cb18e083 296 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 264 5.9E-122 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 RA13_05355 5ca661373736489d2f3987b500ce2395 212 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 102 136 1.2E-5 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_05355 5ca661373736489d2f3987b500ce2395 212 Gene3D G3DSA:3.40.50.20 2 85 4.6E-13 T 13-10-2018 RA13_05355 5ca661373736489d2f3987b500ce2395 212 Gene3D G3DSA:2.160.10.10 86 212 4.4E-28 T 13-10-2018 RA13_05355 5ca661373736489d2f3987b500ce2395 212 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 3 205 1.7E-62 T 13-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like RA13_05355 5ca661373736489d2f3987b500ce2395 212 SUPERFAMILY SSF51161 3 208 3.74E-43 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 Gene3D G3DSA:1.10.357.10 3 189 1.7E-49 T 13-10-2018 RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 SUPERFAMILY SSF46689 5 73 5.99E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.1E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.1E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 SUPERFAMILY SSF48498 78 186 6.35E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 Pfam PF16295 Tetracycline repressor, C-terminal all-alpha domain 58 188 1.7E-50 T 13-10-2018 IPR032551 HTH-type transcriptional repressor, C-terminal RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 55 1.6E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_09220 f357ab09c0ad5f26930c8cc27651b42f 189 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RA13_17740 56139d14c56649c7e3b7c0896ced56f2 102 SUPERFAMILY SSF117916 4 100 5.23E-33 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RA13_17740 56139d14c56649c7e3b7c0896ced56f2 102 Pfam PF01883 Iron-sulfur cluster assembly protein 6 80 6.5E-23 T 13-10-2018 IPR002744 MIP18 family-like RA13_17740 56139d14c56649c7e3b7c0896ced56f2 102 Gene3D G3DSA:3.30.300.130 1 102 2.0E-37 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 Gene3D G3DSA:3.90.110.10 169 449 1.0E-111 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 PRINTS PR00732 Glycosyl hydrolase family 4 signature 76 92 1.6E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 PRINTS PR00732 Glycosyl hydrolase family 4 signature 166 177 1.6E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 PRINTS PR00732 Glycosyl hydrolase family 4 signature 97 110 1.6E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 PRINTS PR00732 Glycosyl hydrolase family 4 signature 111 131 1.6E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 PRINTS PR00732 Glycosyl hydrolase family 4 signature 140 157 1.6E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 1.6E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 PRINTS PR00732 Glycosyl hydrolase family 4 signature 7 22 1.6E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 SUPERFAMILY SSF51735 5 166 1.89E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 Pfam PF02056 Family 4 glycosyl hydrolase 7 186 6.4E-72 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 140 171 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 Gene3D G3DSA:3.40.50.720 3 168 1.5E-61 T 13-10-2018 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 SUPERFAMILY SSF56327 170 442 1.79E-93 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_19330 6090b05a5d6fb3e8eb4137f9e3d280b2 449 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 417 1.0E-50 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RA13_05280 17694eb39e06a77f5c6d49be00ee5756 185 Gene3D G3DSA:2.60.120.40 46 181 1.6E-10 T 13-10-2018 IPR008983 Tumour necrosis factor-like domain superfamily GO:0005515 RA13_05280 17694eb39e06a77f5c6d49be00ee5756 185 SUPERFAMILY SSF49842 47 179 1.78E-14 T 13-10-2018 IPR008983 Tumour necrosis factor-like domain superfamily GO:0005515 RA13_05280 17694eb39e06a77f5c6d49be00ee5756 185 Pfam PF00386 C1q domain 50 166 2.1E-6 T 13-10-2018 IPR001073 C1q domain RA13_08740 71863200aa961b26ac6308d74d7fbd67 268 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 220 3.0E-24 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RA13_08740 71863200aa961b26ac6308d74d7fbd67 268 Gene3D G3DSA:3.40.50.300 3 255 5.8E-66 T 13-10-2018 RA13_08740 71863200aa961b26ac6308d74d7fbd67 268 SUPERFAMILY SSF52540 5 262 2.43E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08740 71863200aa961b26ac6308d74d7fbd67 268 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 264 4.9E-126 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 RA13_08740 71863200aa961b26ac6308d74d7fbd67 268 PIRSF PIRSF003092 1 268 1.9E-95 T 13-10-2018 IPR025501 ATP binding protein MinD RA13_21610 93c088c7301e73ce018b46bad99f4d9f 492 SUPERFAMILY SSF103473 16 485 4.84E-34 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_21610 93c088c7301e73ce018b46bad99f4d9f 492 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 158 170 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RA13_21610 93c088c7301e73ce018b46bad99f4d9f 492 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 84 108 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RA13_21610 93c088c7301e73ce018b46bad99f4d9f 492 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 16 488 7.4E-135 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 RA13_21610 93c088c7301e73ce018b46bad99f4d9f 492 Gene3D G3DSA:1.20.1250.20 1 492 8.0E-145 T 13-10-2018 RA13_21610 93c088c7301e73ce018b46bad99f4d9f 492 Pfam PF00854 POT family 96 458 1.7E-87 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 RA13_17525 646ea145e1a2be3133b23289beb8e194 300 Pfam PF13743 Thioredoxin 24 216 5.8E-74 T 13-10-2018 RA13_17525 646ea145e1a2be3133b23289beb8e194 300 SUPERFAMILY SSF52833 19 224 8.96E-30 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_17525 646ea145e1a2be3133b23289beb8e194 300 Gene3D G3DSA:1.10.472.60 61 186 7.2E-34 T 13-10-2018 RA13_17525 646ea145e1a2be3133b23289beb8e194 300 Gene3D G3DSA:3.40.30.10 26 215 7.2E-34 T 13-10-2018 RA13_17800 a7d112049930713e38a82baa1406b826 146 Pfam PF00583 Acetyltransferase (GNAT) family 26 123 5.1E-11 T 13-10-2018 IPR000182 GNAT domain RA13_17800 a7d112049930713e38a82baa1406b826 146 Gene3D G3DSA:3.40.630.30 1 146 1.0E-37 T 13-10-2018 RA13_17800 a7d112049930713e38a82baa1406b826 146 SUPERFAMILY SSF55729 10 145 1.36E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 192 1.6E-109 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 Pfam PF00574 Clp protease 13 192 3.0E-87 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 4.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 4.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 4.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 4.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 4.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 13-10-2018 IPR033135 ClpP, histidine active site RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 13-10-2018 IPR018215 ClpP, Ser active site RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 Gene3D G3DSA:3.90.226.10 1 196 1.8E-83 T 13-10-2018 RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 SUPERFAMILY SSF52096 10 193 4.97E-73 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_05205 24e985caf7bf157ad4d383d7483ff3f7 198 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 44.459 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RA13_18130 af79c542079a09ea9722c9d177f59c6a 192 PIRSF PIRSF000709 2 155 2.0E-12 T 13-10-2018 RA13_18130 af79c542079a09ea9722c9d177f59c6a 192 SUPERFAMILY SSF53254 1 189 7.07E-54 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RA13_18130 af79c542079a09ea9722c9d177f59c6a 192 Gene3D G3DSA:3.40.50.1240 1 192 1.6E-53 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RA13_18130 af79c542079a09ea9722c9d177f59c6a 192 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 183 1.4E-50 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RA13_18130 af79c542079a09ea9722c9d177f59c6a 192 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RA13_18130 af79c542079a09ea9722c9d177f59c6a 192 SMART SM00855 3 146 1.3E-21 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RA13_08610 2494dd3b17017d9e8777ce974cdb3cf2 334 SUPERFAMILY SSF116965 83 291 2.35E-8 T 13-10-2018 RA13_08610 2494dd3b17017d9e8777ce974cdb3cf2 334 Gene3D G3DSA:1.25.40.10 15 145 7.3E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_08610 2494dd3b17017d9e8777ce974cdb3cf2 334 SUPERFAMILY SSF48452 14 119 2.17E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_08610 2494dd3b17017d9e8777ce974cdb3cf2 334 Pfam PF14559 Tetratricopeptide repeat 27 81 2.1E-10 T 13-10-2018 RA13_19445 121d40bf34d7a6d8a877abcf8330a3ee 280 SUPERFAMILY SSF50182 103 166 1.83E-11 T 13-10-2018 IPR010920 LSM domain superfamily RA13_19445 121d40bf34d7a6d8a877abcf8330a3ee 280 Gene3D G3DSA:3.30.70.100 170 267 1.1E-7 T 13-10-2018 RA13_19445 121d40bf34d7a6d8a877abcf8330a3ee 280 Gene3D G3DSA:2.30.30.60 118 167 1.0E-17 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RA13_19445 121d40bf34d7a6d8a877abcf8330a3ee 280 Pfam PF00924 Mechanosensitive ion channel 61 267 6.7E-33 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RA13_19445 121d40bf34d7a6d8a877abcf8330a3ee 280 SUPERFAMILY SSF82861 16 101 1.7E-10 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RA13_08130 d6331ea15d82e526a56691bdfd960a68 423 SMART SM01329 21 418 3.6E-186 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RA13_08130 d6331ea15d82e526a56691bdfd960a68 423 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 2 422 1.6E-224 T 13-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RA13_08130 d6331ea15d82e526a56691bdfd960a68 423 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 307 326 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RA13_08130 d6331ea15d82e526a56691bdfd960a68 423 SUPERFAMILY SSF53659 4 422 4.22E-142 T 13-10-2018 RA13_08130 d6331ea15d82e526a56691bdfd960a68 423 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 22 417 5.6E-125 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RA13_08130 d6331ea15d82e526a56691bdfd960a68 423 Gene3D G3DSA:3.40.718.10 1 423 4.2E-183 T 13-10-2018 RA13_04300 7ea1c439725e633253f608e94d86d9b2 271 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 191 266 4.6E-16 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RA13_04300 7ea1c439725e633253f608e94d86d9b2 271 SUPERFAMILY SSF117143 115 227 1.15E-9 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RA13_04300 7ea1c439725e633253f608e94d86d9b2 271 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 149 3.2E-20 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RA13_04300 7ea1c439725e633253f608e94d86d9b2 271 Pfam PF00460 Flagella basal body rod protein 5 35 1.1E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RA13_04300 7ea1c439725e633253f608e94d86d9b2 271 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RA13_14320 04359ea947a1a82879a8116c8eb2f16b 251 Gene3D G3DSA:2.40.30.200 1 135 5.4E-9 T 13-10-2018 IPR038675 Streptococcus phage 7201 Orf34, N-terminal domain superfamily RA13_14320 04359ea947a1a82879a8116c8eb2f16b 251 Pfam PF05709 Phage tail protein 37 247 2.5E-18 T 13-10-2018 IPR008841 Siphovirus-type tail component RA13_19670 a780a989c8e53bbed9aaf40088d96ddc 376 Pfam PF00271 Helicase conserved C-terminal domain 229 335 4.3E-22 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_19670 a780a989c8e53bbed9aaf40088d96ddc 376 SMART SM00487 23 220 3.0E-53 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_19670 a780a989c8e53bbed9aaf40088d96ddc 376 Pfam PF00270 DEAD/DEAH box helicase 28 193 2.9E-44 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_19670 a780a989c8e53bbed9aaf40088d96ddc 376 SMART SM00490 255 335 3.9E-22 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_19670 a780a989c8e53bbed9aaf40088d96ddc 376 Gene3D G3DSA:3.40.50.300 6 208 2.7E-62 T 13-10-2018 RA13_19670 a780a989c8e53bbed9aaf40088d96ddc 376 SUPERFAMILY SSF52540 72 354 1.24E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19670 a780a989c8e53bbed9aaf40088d96ddc 376 Gene3D G3DSA:3.40.50.300 211 375 1.1E-37 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Pfam PF01751 Toprim domain 423 534 7.2E-19 T 13-10-2018 IPR006171 TOPRIM domain RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 568 627 1.8E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 183 198 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 607 623 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 8 18 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 474 483 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 364 378 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 224 246 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 591 603 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 198 211 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 316 332 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR01159 DNA gyrase subunit B signature 378 398 1.8E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 638 98.017 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 SUPERFAMILY SSF55874 8 220 1.28E-74 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_01780 48850c0d7313503f474c84b11a97f64e 638 SMART SM00387 33 177 6.0E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_01780 48850c0d7313503f474c84b11a97f64e 638 SMART SM00433 37 631 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Gene3D G3DSA:3.40.50.670 403 638 9.3E-112 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 SUPERFAMILY SSF56719 398 629 1.83E-93 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 SUPERFAMILY SSF54211 225 395 1.54E-63 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_01780 48850c0d7313503f474c84b11a97f64e 638 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 638 0.0 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Gene3D G3DSA:3.30.230.10 224 402 8.8E-75 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 175 8.9E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_01780 48850c0d7313503f474c84b11a97f64e 638 ProSitePatterns PS00177 DNA topoisomerase II signature. 426 434 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Gene3D G3DSA:3.30.565.10 4 223 5.9E-94 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_01780 48850c0d7313503f474c84b11a97f64e 638 Pfam PF00204 DNA gyrase B 225 394 1.4E-64 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 115 129 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 490 506 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 37 52 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 424 438 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 528 540 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 508 525 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 272 285 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 570 586 1.5E-72 T 13-10-2018 RA13_01780 48850c0d7313503f474c84b11a97f64e 638 PRINTS PR00418 DNA topoisomerase II family signature 72 85 1.5E-72 T 13-10-2018 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 17 215 2.7E-29 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 SUPERFAMILY SSF53790 14 232 4.32E-79 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 94 105 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 16 289 6.6E-79 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 PIRSF PIRSF005917 4 292 5.1E-101 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 16 234 35.89 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 Gene3D G3DSA:3.30.950.10 124 239 2.4E-40 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RA13_01535 bd7ff13ee7a90820cd0a0134764d5b16 292 Gene3D G3DSA:3.40.1010.10 3 123 4.6E-45 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RA13_16455 db80b64eb9efa0bf39c44dfac4004a7e 177 Gene3D G3DSA:3.30.240.20 76 149 2.7E-17 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_16455 db80b64eb9efa0bf39c44dfac4004a7e 177 Pfam PF04239 Protein of unknown function (DUF421) 83 157 1.1E-19 T 13-10-2018 IPR007353 Protein of unknown function DUF421 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 387 414 2.2E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 416 445 2.2E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 464 493 2.2E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 2.2E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 SUPERFAMILY SSF58104 228 564 6.71E-66 T 13-10-2018 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 334 515 1.5E-55 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 SUPERFAMILY SSF103190 71 182 1.02E-10 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 SMART SM00283 289 564 5.6E-88 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 SMART SM00304 208 260 4.4E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 Gene3D G3DSA:1.10.287.950 208 530 3.7E-68 T 13-10-2018 RA13_21720 7a9bca20965a8d2aa29d71108c63f25b 566 Pfam PF17202 Single cache domain 3 80 180 8.3E-32 T 13-10-2018 IPR033463 Single cache domain 3 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 PIRSF PIRSF006487 1 364 5.7E-105 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 362 48.416 T 13-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 SUPERFAMILY SSF103025 2 280 4.04E-103 T 13-10-2018 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 Gene3D G3DSA:2.40.30.110 280 362 1.1E-32 T 13-10-2018 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 Gene3D G3DSA:3.30.1360.120 4 235 6.4E-95 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 Gene3D G3DSA:4.10.1250.10 236 279 1.8E-17 T 13-10-2018 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 362 4.3E-166 T 13-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 258 1.3E-96 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 SUPERFAMILY SSF101790 273 363 2.45E-26 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 Gene3D G3DSA:3.30.70.1400 51 136 6.4E-95 T 13-10-2018 RA13_10045 3cdf9e99e9cf336975772fd35c4decb3 364 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 266 356 3.9E-26 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 RA13_00090 f891676c713d33f6a3cfeb945030abd0 280 Pfam PF00950 ABC 3 transport family 6 262 8.2E-81 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 RA13_00090 f891676c713d33f6a3cfeb945030abd0 280 SUPERFAMILY SSF81345 3 258 1.05E-34 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_00090 f891676c713d33f6a3cfeb945030abd0 280 Gene3D G3DSA:1.10.3470.10 59 202 1.1E-7 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_17510 4a913a4d7801ea5a4d6cf9b99c5f180d 190 SMART SM01118 4 189 4.2E-21 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RA13_17510 4a913a4d7801ea5a4d6cf9b99c5f180d 190 Gene3D G3DSA:2.40.320.10 1 189 4.6E-51 T 13-10-2018 RA13_17510 4a913a4d7801ea5a4d6cf9b99c5f180d 190 SUPERFAMILY SSF55154 5 186 6.05E-30 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 RA13_17510 4a913a4d7801ea5a4d6cf9b99c5f180d 190 PIRSF PIRSF012526 1 190 1.9E-69 T 13-10-2018 IPR009195 Uncharacterised protein family YjbK RA13_17510 4a913a4d7801ea5a4d6cf9b99c5f180d 190 Pfam PF01928 CYTH domain 4 183 3.9E-31 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 SUPERFAMILY SSF53067 4 248 1.92E-66 T 13-10-2018 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 PIRSF PIRSF000538 2 504 1.3E-138 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 SUPERFAMILY SSF53067 249 498 8.39E-66 T 13-10-2018 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 Gene3D G3DSA:3.30.420.40 1 247 8.2E-79 T 13-10-2018 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 TIGRFAM TIGR01314 gntK_FGGY: gluconate kinase 4 507 2.7E-294 T 13-10-2018 IPR006002 Gluconate kinase GO:0019521|GO:0046316 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 Gene3D G3DSA:3.30.420.40 248 513 1.1E-87 T 13-10-2018 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 246 2.9E-85 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RA13_02430 3d4189ab39f126ac4e1be5ef4ed45d74 513 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 256 451 3.7E-35 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 44.95 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 5.3E-109 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 Gene3D G3DSA:3.30.190.20 21 225 7.5E-86 T 13-10-2018 RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 PIRSF PIRSF002155 1 227 3.2E-82 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 Gene3D G3DSA:3.40.50.790 68 159 7.5E-86 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 SUPERFAMILY SSF56808 6 226 6.54E-86 T 13-10-2018 IPR023674 Ribosomal protein L1-like RA13_01115 b6f06259f8cb82d51013d4205bb0b7f6 232 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 8.4E-57 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RA13_12150 fe87823451585334457aceaa99b5157d 659 Pfam PF13930 DNA/RNA non-specific endonuclease 516 644 2.0E-41 T 13-10-2018 RA13_12150 fe87823451585334457aceaa99b5157d 659 Pfam PF04740 LXG domain of WXG superfamily 2 201 2.3E-51 T 13-10-2018 IPR006829 LXG domain RA13_06520 8d83da4d58d71f9b5580f169eddc390c 73 Pfam PF03621 MbtH-like protein 1 52 4.2E-26 T 13-10-2018 IPR005153 MbtH-like domain RA13_06520 8d83da4d58d71f9b5580f169eddc390c 73 SMART SM00923 3 53 2.5E-25 T 13-10-2018 IPR005153 MbtH-like domain RA13_06520 8d83da4d58d71f9b5580f169eddc390c 73 Gene3D G3DSA:3.90.820.10 1 68 2.6E-29 T 13-10-2018 RA13_06520 8d83da4d58d71f9b5580f169eddc390c 73 SUPERFAMILY SSF160582 1 65 1.18E-27 T 13-10-2018 IPR038020 MbtH-like domain superfamily RA13_07280 b6db0dc096dafbcb37d5ae48a704b66c 315 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 303 2.1E-55 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_07280 b6db0dc096dafbcb37d5ae48a704b66c 315 SUPERFAMILY SSF51735 1 312 9.79E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_07280 b6db0dc096dafbcb37d5ae48a704b66c 315 PRINTS PR01713 Nucleotide sugar epimerase signature 236 251 1.8E-6 T 13-10-2018 RA13_07280 b6db0dc096dafbcb37d5ae48a704b66c 315 PRINTS PR01713 Nucleotide sugar epimerase signature 275 292 1.8E-6 T 13-10-2018 RA13_07280 b6db0dc096dafbcb37d5ae48a704b66c 315 PRINTS PR01713 Nucleotide sugar epimerase signature 213 228 1.8E-6 T 13-10-2018 RA13_07280 b6db0dc096dafbcb37d5ae48a704b66c 315 Gene3D G3DSA:3.90.25.10 177 304 6.7E-93 T 13-10-2018 RA13_07280 b6db0dc096dafbcb37d5ae48a704b66c 315 Gene3D G3DSA:3.40.50.720 4 296 6.7E-93 T 13-10-2018 RA13_18030 56e65b6a86350b0c3630b75f50ff070e 176 ProSitePatterns PS01117 MarR-type HTH domain signature. 84 118 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RA13_18030 56e65b6a86350b0c3630b75f50ff070e 176 Pfam PF01047 MarR family 52 110 4.9E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18030 56e65b6a86350b0c3630b75f50ff070e 176 Gene3D G3DSA:1.10.10.10 1 162 5.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_18030 56e65b6a86350b0c3630b75f50ff070e 176 SMART SM00347 46 148 2.8E-22 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18030 56e65b6a86350b0c3630b75f50ff070e 176 SUPERFAMILY SSF46785 21 163 1.39E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_00925 608809e732b4bd5a9ebf3fc55cc4543b 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.611 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00925 608809e732b4bd5a9ebf3fc55cc4543b 37 Pfam PF00444 Ribosomal protein L36 1 37 3.2E-19 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00925 608809e732b4bd5a9ebf3fc55cc4543b 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 5.8E-24 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00925 608809e732b4bd5a9ebf3fc55cc4543b 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 10 37 2.0E-8 T 13-10-2018 RA13_00925 608809e732b4bd5a9ebf3fc55cc4543b 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00925 608809e732b4bd5a9ebf3fc55cc4543b 37 SUPERFAMILY SSF57840 1 37 6.28E-17 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00020 783e36cc3ed1a8e7e483967216e061e7 293 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 30 172 1.7E-40 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RA13_00020 783e36cc3ed1a8e7e483967216e061e7 293 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 190 293 8.8E-23 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RA13_00020 783e36cc3ed1a8e7e483967216e061e7 293 Gene3D G3DSA:3.40.190.230 33 291 5.4E-118 T 13-10-2018 RA13_00020 783e36cc3ed1a8e7e483967216e061e7 293 SUPERFAMILY SSF53850 32 187 1.63E-50 T 13-10-2018 RA13_00020 783e36cc3ed1a8e7e483967216e061e7 293 Gene3D G3DSA:3.10.105.10 116 272 5.4E-118 T 13-10-2018 RA13_00020 783e36cc3ed1a8e7e483967216e061e7 293 SUPERFAMILY SSF53850 188 293 3.8E-28 T 13-10-2018 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 Pfam PF04542 Sigma-70 region 2 43 111 4.7E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PRINTS PR00046 Major sigma-70 factor signature 91 99 2.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PRINTS PR00046 Major sigma-70 factor signature 211 223 2.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PRINTS PR00046 Major sigma-70 factor signature 228 243 2.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PRINTS PR00046 Major sigma-70 factor signature 243 254 2.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PRINTS PR00046 Major sigma-70 factor signature 67 80 2.3E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 SUPERFAMILY SSF88946 12 111 2.35E-33 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 Gene3D G3DSA:1.10.10.10 112 165 2.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 228 254 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 Pfam PF04545 Sigma-70, region 4 208 254 3.2E-13 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 TIGRFAM TIGR02850 spore_sigG: RNA polymerase sigma-G factor 4 258 1.3E-156 T 13-10-2018 IPR014212 RNA polymerase sigma-G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 Gene3D G3DSA:1.20.120.1810 3 111 2.0E-27 T 13-10-2018 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 67 80 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 SUPERFAMILY SSF88659 176 258 3.18E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 Gene3D G3DSA:1.10.10.10 186 260 1.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 37 258 8.5E-84 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 SUPERFAMILY SSF88659 115 191 2.75E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 Pfam PF04539 Sigma-70 region 3 125 176 1.6E-6 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 38 257 3.0E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PIRSF PIRSF000770 124 158 2.8 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PIRSF PIRSF000770 13 122 8.7E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_15520 8d70fd7db1c0da09b9b8d082c1910a88 260 PIRSF PIRSF000770 159 260 5.2E-14 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_00890 64504a8dda943d92fa7027613f6ec825 265 Hamap MF_01461 Energy-coupling factor transporter transmembrane protein EcfT [ecfT]. 2 265 38.706 T 13-10-2018 IPR024919 ECF transporter transmembrane protein EcfT GO:0016021|GO:0022857|GO:0055085 RA13_00890 64504a8dda943d92fa7027613f6ec825 265 Pfam PF02361 Cobalt transport protein 14 237 8.6E-63 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component RA13_17805 b808a2b22ce0b3735b78bf0e80230781 284 Pfam PF13673 Acetyltransferase (GNAT) domain 69 124 3.0E-7 T 13-10-2018 IPR000182 GNAT domain RA13_17805 b808a2b22ce0b3735b78bf0e80230781 284 SUPERFAMILY SSF55729 10 228 3.31E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_17805 b808a2b22ce0b3735b78bf0e80230781 284 Gene3D G3DSA:3.40.630.30 5 129 2.6E-12 T 13-10-2018 RA13_19335 f601f8c43a6aa6b9662771dfca2fe814 100 Pfam PF06013 Proteins of 100 residues with WXG 2 80 1.4E-12 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RA13_19335 f601f8c43a6aa6b9662771dfca2fe814 100 Gene3D G3DSA:1.10.287.1060 1 89 3.4E-14 T 13-10-2018 RA13_19335 f601f8c43a6aa6b9662771dfca2fe814 100 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 3 85 1.1E-15 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RA13_19335 f601f8c43a6aa6b9662771dfca2fe814 100 SUPERFAMILY SSF140453 2 88 3.14E-14 T 13-10-2018 IPR036689 ESAT-6-like superfamily RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 Gene3D G3DSA:2.30.140.30 268 359 2.5E-32 T 13-10-2018 RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 26 251 1.3E-76 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 135 148 4.8E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 108 125 4.8E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 60 71 4.8E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 SUPERFAMILY SSF56601 1 268 2.44E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 268 356 1.3E-7 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_10825 40a4ba41fedfa12cafb4f0788bceb1cd 383 Gene3D G3DSA:3.40.710.10 32 267 3.0E-89 T 13-10-2018 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 SUPERFAMILY SSF51735 3 166 1.27E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08845 f41591815c13f40937b93eea6132e0b4 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 2.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 4 19 2.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 165 176 2.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 75 91 2.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 96 109 2.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 139 156 2.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 PRINTS PR00732 Glycosyl hydrolase family 4 signature 110 130 2.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 SUPERFAMILY SSF56327 171 435 1.64E-84 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 410 1.4E-43 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 Pfam PF02056 Family 4 glycosyl hydrolase 4 184 1.6E-64 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 139 170 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 Gene3D G3DSA:3.90.110.10 169 442 1.5E-93 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_08845 f41591815c13f40937b93eea6132e0b4 444 Gene3D G3DSA:3.40.50.720 1 168 1.1E-67 T 13-10-2018 RA13_21845 0fc9a8cac255c514cd44af0369a42897 484 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 151 176 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site RA13_21845 0fc9a8cac255c514cd44af0369a42897 484 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 409 429 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site RA13_21845 0fc9a8cac255c514cd44af0369a42897 484 Pfam PF00474 Sodium:solute symporter family 29 427 3.8E-111 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_21845 0fc9a8cac255c514cd44af0369a42897 484 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 29 427 3.7E-99 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_21845 0fc9a8cac255c514cd44af0369a42897 484 Gene3D G3DSA:1.20.1730.10 17 482 1.7E-101 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RA13_21845 0fc9a8cac255c514cd44af0369a42897 484 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 2 481 3.7E-222 T 13-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 RA13_01815 41e5c11d448c594cdd4d3c46352e5221 115 Pfam PF00825 Ribonuclease P 1 106 6.2E-35 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RA13_01815 41e5c11d448c594cdd4d3c46352e5221 115 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 110 20.341 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RA13_01815 41e5c11d448c594cdd4d3c46352e5221 115 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 1 110 2.2E-37 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RA13_01815 41e5c11d448c594cdd4d3c46352e5221 115 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 7 100 3.0E-36 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RA13_01815 41e5c11d448c594cdd4d3c46352e5221 115 Gene3D G3DSA:3.30.230.10 1 115 2.6E-42 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_01815 41e5c11d448c594cdd4d3c46352e5221 115 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 51 65 - T 13-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 RA13_01815 41e5c11d448c594cdd4d3c46352e5221 115 SUPERFAMILY SSF54211 1 111 3.03E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 Gene3D G3DSA:3.40.50.300 1 240 3.3E-75 T 13-10-2018 RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 SUPERFAMILY SSF54631 250 374 8.45E-27 T 13-10-2018 RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 Pfam PF00571 CBS domain 251 297 6.7E-10 T 13-10-2018 IPR000644 CBS domain RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 Pfam PF00571 CBS domain 311 363 5.4E-9 T 13-10-2018 IPR000644 CBS domain RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 SMART SM00116 258 306 4.0E-8 T 13-10-2018 IPR000644 CBS domain RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 SMART SM00116 318 366 3.3E-10 T 13-10-2018 IPR000644 CBS domain RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 SUPERFAMILY SSF52540 1 240 7.48E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 Gene3D G3DSA:3.10.580.10 247 372 1.4E-37 T 13-10-2018 RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 SMART SM00382 27 212 7.6E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 Pfam PF00005 ABC transporter 19 163 2.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05550 88e00f64bff424e0cc3770f798aecb77 379 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 13 371 1.2E-182 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 9.4E-66 T 13-10-2018 RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.7E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 Gene3D G3DSA:3.40.50.720 1 261 2.7E-87 T 13-10-2018 RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 4.2E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 4.2E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 4.2E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21430 6a424cbc88974f0ce70c80295f061a5a 261 SUPERFAMILY SSF51735 6 251 4.63E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10920 8e4f10583df5e1add36a66f55073e96d 152 ProDom PD089241 YPBF MEMBRANE BH1610 TRANSMEMBRANE 17 150 8.0E-49 T 13-10-2018 IPR020210 Uncharacterised protein family, YpbF, transmembrane RA13_10920 8e4f10583df5e1add36a66f55073e96d 152 Pfam PF10864 Protein of unknown function (DUF2663) 19 150 1.2E-49 T 13-10-2018 IPR020210 Uncharacterised protein family, YpbF, transmembrane RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 Pfam PF06605 Prophage endopeptidase tail 224 548 2.2E-61 T 13-10-2018 IPR010572 Prophage tail endopeptidase RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 14 145 5.8E-22 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 PRINTS PR01002 Flagellar protein FlgJ signature 126 144 1.3E-11 T 13-10-2018 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 PRINTS PR01002 Flagellar protein FlgJ signature 84 105 1.3E-11 T 13-10-2018 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 PRINTS PR01002 Flagellar protein FlgJ signature 106 125 1.3E-11 T 13-10-2018 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 PRINTS PR01002 Flagellar protein FlgJ signature 41 62 1.3E-11 T 13-10-2018 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 Gene3D G3DSA:3.55.50.40 285 373 5.7E-13 T 13-10-2018 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 SMART SM00047 2 149 7.9E-65 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 Gene3D G3DSA:4.10.80.30 57 83 9.7E-45 T 13-10-2018 RA13_12100 d3ea4381763fdaca5109817929d6cddc 568 Gene3D G3DSA:1.10.530.10 6 149 9.7E-45 T 13-10-2018 RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PIRSF PIRSF000126 2 259 7.2E-52 T 13-10-2018 RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 6.4E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.4E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 6.4E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 6.4E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.4E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 SUPERFAMILY SSF51735 1 252 1.35E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 Gene3D G3DSA:3.40.50.720 1 259 1.9E-68 T 13-10-2018 RA13_10445 47e5d2f2f72dc19eaf035ec4415c5dcf 259 Pfam PF00106 short chain dehydrogenase 7 190 2.9E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_17490 23fbcd352f56538fb02377e8cfd10893 282 Gene3D G3DSA:3.30.2350.10 67 282 6.9E-69 T 13-10-2018 RA13_17490 23fbcd352f56538fb02377e8cfd10893 282 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 24 280 2.3E-73 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_17490 23fbcd352f56538fb02377e8cfd10893 282 Pfam PF00849 RNA pseudouridylate synthase 75 225 5.6E-28 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_17490 23fbcd352f56538fb02377e8cfd10893 282 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 117 131 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_17490 23fbcd352f56538fb02377e8cfd10893 282 SUPERFAMILY SSF55120 58 279 1.92E-70 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 SUPERFAMILY SSF51338 14 354 8.8E-19 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 Pfam PF01979 Amidohydrolase family 66 348 6.2E-38 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 Hamap MF_01518 Adenine deaminase [ade]. 20 573 38.68 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 SUPERFAMILY SSF51556 70 318 1.52E-42 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 Gene3D G3DSA:3.20.20.140 70 313 3.8E-124 T 13-10-2018 RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 Gene3D G3DSA:2.30.40.10 13 350 3.8E-124 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 TIGRFAM TIGR01178 ade: adenine deaminase 20 574 2.0E-239 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RA13_15935 2d6ece680fa06b37e51995e571d3e80a 575 Pfam PF13382 Adenine deaminase C-terminal domain 409 570 4.6E-61 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 SUPERFAMILY SSF46689 217 267 8.51E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 232 247 4.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 247 263 4.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 Pfam PF12833 Helix-turn-helix domain 186 264 1.4E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 Gene3D G3DSA:3.40.50.1980 261 377 1.8E-5 T 13-10-2018 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 Gene3D G3DSA:1.10.10.2730 218 260 1.3E-16 T 13-10-2018 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 Gene3D G3DSA:1.10.10.60 162 217 8.6E-12 T 13-10-2018 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 Pfam PF01497 Periplasmic binding protein 271 504 3.8E-23 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 SMART SM00342 180 263 8.0E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 217 259 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 Gene3D G3DSA:3.40.50.1980 380 529 1.9E-24 T 13-10-2018 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 SUPERFAMILY SSF46689 166 214 2.78E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_00745 b185b2e44ca62999f46f494bb55758f4 531 SUPERFAMILY SSF53807 266 525 3.3E-36 T 13-10-2018 RA13_10035 fb34dd8015b30070a72fcfa81b994011 264 ProDom PD123329 YQHG BH2818 1 260 8.0E-132 T 13-10-2018 IPR024562 Uncharacterised protein family YqhG RA13_10035 fb34dd8015b30070a72fcfa81b994011 264 Pfam PF11079 Bacterial protein YqhG of unknown function 2 258 4.1E-123 T 13-10-2018 IPR024562 Uncharacterised protein family YqhG RA13_20425 59ad0abb140a4995db5c9d6f92bc064f 170 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 154 1.0E-67 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_20425 59ad0abb140a4995db5c9d6f92bc064f 170 SUPERFAMILY SSF55040 11 157 2.22E-56 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_20425 59ad0abb140a4995db5c9d6f92bc064f 170 Gene3D G3DSA:3.30.70.640 1 162 1.4E-68 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_20425 59ad0abb140a4995db5c9d6f92bc064f 170 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 160 35.784 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_20425 59ad0abb140a4995db5c9d6f92bc064f 170 Pfam PF01967 MoaC family 15 152 5.3E-53 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 SUPERFAMILY SSF52540 1263 1332 3.01E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 SUPERFAMILY SSF52540 957 1185 4.09E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Pfam PF01580 FtsK/SpoIIIE family 1256 1356 3.0E-7 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Pfam PF01580 FtsK/SpoIIIE family 983 1161 1.2E-21 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Pfam PF01580 FtsK/SpoIIIE family 643 855 6.4E-31 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Gene3D G3DSA:3.40.50.300 391 517 3.4E-5 T 13-10-2018 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Gene3D G3DSA:3.40.50.300 620 952 2.8E-77 T 13-10-2018 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 SUPERFAMILY SSF52540 642 900 5.23E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 TIGRFAM TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC 209 1484 0.0 T 13-10-2018 IPR023839 Firmicutes EssC, C-terminal RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Gene3D G3DSA:3.40.50.300 1254 1486 1.3E-20 T 13-10-2018 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Gene3D G3DSA:3.40.50.300 959 1246 7.1E-60 T 13-10-2018 RA13_06555 ac120b57fb4583a38be9cf163ba60a72 1494 Pfam PF12538 DNA transporter 3 122 5.9E-26 T 13-10-2018 IPR022206 Firmicutes EssC, N-terminal RA13_12400 3c9c26baa1a733655fffcdeebd8f731c 412 Gene3D G3DSA:1.20.1250.20 213 406 1.6E-19 T 13-10-2018 RA13_12400 3c9c26baa1a733655fffcdeebd8f731c 412 Gene3D G3DSA:1.20.1250.20 10 200 3.2E-16 T 13-10-2018 RA13_12400 3c9c26baa1a733655fffcdeebd8f731c 412 TIGRFAM TIGR00897 2A0118: polyol permease 1 398 2.7E-200 T 13-10-2018 IPR004748 Polyol permease GO:0016021|GO:0022857|GO:0055085 RA13_12400 3c9c26baa1a733655fffcdeebd8f731c 412 Pfam PF07690 Major Facilitator Superfamily 262 401 3.8E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_12400 3c9c26baa1a733655fffcdeebd8f731c 412 Pfam PF07690 Major Facilitator Superfamily 15 253 2.3E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_12400 3c9c26baa1a733655fffcdeebd8f731c 412 SUPERFAMILY SSF103473 9 398 3.4E-46 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_21525 f2e4da517c02e75cefde93362f036c61 382 SUPERFAMILY SSF48452 103 211 2.47E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 Gene3D G3DSA:1.25.40.10 2 382 2.2E-130 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 SUPERFAMILY SSF48452 179 296 1.68E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 SMART SM00028 223 256 6.1E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 SMART SM00028 183 216 51.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 SMART SM00028 102 135 430.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 SMART SM00028 263 296 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 SMART SM00028 142 175 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_21525 f2e4da517c02e75cefde93362f036c61 382 Pfam PF00515 Tetratricopeptide repeat 224 256 1.6E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 RA13_02150 81929f72e0706a058975e95ff7c12c33 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 7.5E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_02150 81929f72e0706a058975e95ff7c12c33 235 Pfam PF00072 Response regulator receiver domain 5 114 2.1E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_02150 81929f72e0706a058975e95ff7c12c33 235 SMART SM00862 153 229 5.5E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_02150 81929f72e0706a058975e95ff7c12c33 235 SUPERFAMILY SSF52172 2 125 1.99E-44 T 13-10-2018 IPR011006 CheY-like superfamily RA13_02150 81929f72e0706a058975e95ff7c12c33 235 Gene3D G3DSA:1.10.10.10 131 235 2.1E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_02150 81929f72e0706a058975e95ff7c12c33 235 Gene3D G3DSA:3.40.50.2300 1 130 1.2E-40 T 13-10-2018 RA13_02150 81929f72e0706a058975e95ff7c12c33 235 SMART SM00448 3 113 2.2E-48 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_02150 81929f72e0706a058975e95ff7c12c33 235 SUPERFAMILY SSF46894 130 230 1.23E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_05385 05768452062149fccdd4b688f201d7ae 239 SMART SM00895 99 226 8.1E-24 T 13-10-2018 IPR011711 GntR, C-terminal RA13_05385 05768452062149fccdd4b688f201d7ae 239 SUPERFAMILY SSF46785 6 78 3.08E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05385 05768452062149fccdd4b688f201d7ae 239 SUPERFAMILY SSF48008 95 234 6.8E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_05385 05768452062149fccdd4b688f201d7ae 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 8.1E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05385 05768452062149fccdd4b688f201d7ae 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 8.1E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05385 05768452062149fccdd4b688f201d7ae 239 SMART SM00345 15 74 1.8E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05385 05768452062149fccdd4b688f201d7ae 239 Pfam PF07729 FCD domain 99 225 4.4E-25 T 13-10-2018 IPR011711 GntR, C-terminal RA13_05385 05768452062149fccdd4b688f201d7ae 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 3.3E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05385 05768452062149fccdd4b688f201d7ae 239 Gene3D G3DSA:1.20.120.530 80 232 1.2E-31 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_05385 05768452062149fccdd4b688f201d7ae 239 Gene3D G3DSA:1.10.10.10 1 74 2.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08165 9b3541ca8d09a6e19a7aa27a4b8e0328 197 Pfam PF01121 Dephospho-CoA kinase 3 183 5.9E-64 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RA13_08165 9b3541ca8d09a6e19a7aa27a4b8e0328 197 Gene3D G3DSA:3.40.50.300 1 197 8.4E-79 T 13-10-2018 RA13_08165 9b3541ca8d09a6e19a7aa27a4b8e0328 197 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 190 3.6E-70 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RA13_08165 9b3541ca8d09a6e19a7aa27a4b8e0328 197 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 195 29.014 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RA13_08165 9b3541ca8d09a6e19a7aa27a4b8e0328 197 SUPERFAMILY SSF52540 4 194 1.63E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 Gene3D G3DSA:3.40.50.2300 3 132 5.4E-34 T 13-10-2018 RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 Pfam PF00072 Response regulator receiver domain 8 117 4.2E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 Gene3D G3DSA:1.10.10.10 133 236 2.0E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 SUPERFAMILY SSF46894 130 232 9.64E-30 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 SMART SM00862 155 231 3.5E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 1.1E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 SUPERFAMILY SSF52172 3 129 8.68E-36 T 13-10-2018 IPR011006 CheY-like superfamily RA13_01980 204d99448ffc0b572a90d4af4a1144ca 236 SMART SM00448 6 117 1.9E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05135 e52a031fc00ae466578b5c769075f23e 316 Pfam PF02650 WhiA C-terminal HTH domain 220 304 2.4E-35 T 13-10-2018 IPR023054 Sporulation regulator WhiA, C-terminal RA13_05135 e52a031fc00ae466578b5c769075f23e 316 Pfam PF14527 WhiA LAGLIDADG-like domain 125 217 5.5E-37 T 13-10-2018 IPR039518 WhiA, LAGLIDADG-like domain RA13_05135 e52a031fc00ae466578b5c769075f23e 316 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 4 305 2.1E-132 T 13-10-2018 IPR033981 Sporulation regulator WhiA-like RA13_05135 e52a031fc00ae466578b5c769075f23e 316 Gene3D G3DSA:1.10.10.10 215 309 3.3E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05135 e52a031fc00ae466578b5c769075f23e 316 Gene3D G3DSA:3.10.28.10 1 214 1.8E-67 T 13-10-2018 IPR027434 Homing endonuclease RA13_05135 e52a031fc00ae466578b5c769075f23e 316 SUPERFAMILY SSF55608 120 221 2.49E-19 T 13-10-2018 IPR027434 Homing endonuclease RA13_05135 e52a031fc00ae466578b5c769075f23e 316 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 307 35.603 T 13-10-2018 IPR003802 Sporulation regulator WhiA GO:0043937 RA13_05135 e52a031fc00ae466578b5c769075f23e 316 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 19 103 8.6E-37 T 13-10-2018 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain RA13_21560 7bdd93c13f53c6263e62d6d00cdb4b3b 249 Pfam PF00005 ABC transporter 17 168 8.5E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_21560 7bdd93c13f53c6263e62d6d00cdb4b3b 249 Gene3D G3DSA:3.40.50.300 1 248 1.7E-77 T 13-10-2018 RA13_21560 7bdd93c13f53c6263e62d6d00cdb4b3b 249 SMART SM00382 26 216 1.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_21560 7bdd93c13f53c6263e62d6d00cdb4b3b 249 PIRSF PIRSF039085 1 244 3.4E-100 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RA13_21560 7bdd93c13f53c6263e62d6d00cdb4b3b 249 SUPERFAMILY SSF52540 1 238 7.84E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_21560 7bdd93c13f53c6263e62d6d00cdb4b3b 249 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 SUPERFAMILY SSF53328 3 206 7.06E-67 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 Pfam PF00551 Formyl transferase 3 180 1.5E-39 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 SUPERFAMILY SSF50486 205 310 2.04E-35 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 Gene3D G3DSA:3.10.25.10 207 314 9.2E-42 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 Pfam PF02911 Formyl transferase, C-terminal domain 204 302 2.3E-33 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 Gene3D G3DSA:3.40.50.170 1 206 8.9E-86 T 13-10-2018 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 2 305 37.454 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 133 156 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RA13_15315 266a19db06d5a3bbce67babd0b8c4250 317 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 2 309 4.6E-124 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RA13_13755 da0b85cb586061dfe7f5352fd432030f 71 Pfam PF09629 YorP protein 1 69 9.5E-41 T 13-10-2018 IPR018591 YorP protein RA13_13755 da0b85cb586061dfe7f5352fd432030f 71 SUPERFAMILY SSF159038 1 66 2.22E-35 T 13-10-2018 IPR038027 YorP domain superfamily RA13_13755 da0b85cb586061dfe7f5352fd432030f 71 Gene3D G3DSA:2.30.30.40 11 64 2.0E-31 T 13-10-2018 RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 Pfam PF00005 ABC transporter 356 501 6.6E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 Gene3D G3DSA:3.40.50.300 328 583 7.3E-86 T 13-10-2018 RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 SUPERFAMILY SSF52540 330 574 1.2E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 Pfam PF00664 ABC transporter transmembrane region 20 292 1.7E-39 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 Gene3D G3DSA:1.20.1560.10 2 320 2.6E-76 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 SMART SM00382 363 549 2.5E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_18470 f4bb6e6ced07560fcb98edf3f0c1d371 585 SUPERFAMILY SSF90123 6 325 1.57E-70 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 PIRSF PIRSF005578 1 267 4.7E-108 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 Pfam PF01479 S4 domain 6 48 1.1E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 Gene3D G3DSA:3.10.290.10 2 64 2.4E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 Pfam PF01728 FtsJ-like methyltransferase 62 242 1.0E-16 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 Gene3D G3DSA:3.40.50.150 65 280 2.7E-84 T 13-10-2018 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 SMART SM00363 6 71 6.6E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 SUPERFAMILY SSF53335 58 245 1.49E-19 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 SUPERFAMILY SSF55174 5 71 2.21E-11 T 13-10-2018 RA13_10200 a4e233b3b9c1d5403b68ca554cac3862 281 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 7 239 1.6E-102 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 RA13_07565 2afd6bf950c026d25dfe3bca0cf2bd0f 103 SMART SM00450 7 101 1.1E-19 T 13-10-2018 IPR001763 Rhodanese-like domain RA13_07565 2afd6bf950c026d25dfe3bca0cf2bd0f 103 Pfam PF00581 Rhodanese-like domain 11 96 1.6E-13 T 13-10-2018 IPR001763 Rhodanese-like domain RA13_07565 2afd6bf950c026d25dfe3bca0cf2bd0f 103 SUPERFAMILY SSF52821 3 99 3.4E-28 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RA13_07565 2afd6bf950c026d25dfe3bca0cf2bd0f 103 Gene3D G3DSA:3.40.250.10 3 102 1.5E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RA13_11465 bf9530b1668d2188c7b22a702cbf4175 228 Hamap MF_02088 Probable queuosine precursor transporter. 26 227 17.201 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 RA13_11465 bf9530b1668d2188c7b22a702cbf4175 228 Pfam PF02592 Putative vitamin uptake transporter 57 217 8.8E-47 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 RA13_11465 bf9530b1668d2188c7b22a702cbf4175 228 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 26 223 9.7E-75 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 RA13_12225 f2a6883dbc862ddfd3204afd38bcd104 445 SUPERFAMILY SSF161070 5 442 1.7E-130 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 RA13_12225 f2a6883dbc862ddfd3204afd38bcd104 445 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 28 42 - T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RA13_12225 f2a6883dbc862ddfd3204afd38bcd104 445 Pfam PF00209 Sodium:neurotransmitter symporter family 149 441 2.8E-29 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RA13_12225 f2a6883dbc862ddfd3204afd38bcd104 445 Pfam PF00209 Sodium:neurotransmitter symporter family 5 125 1.7E-26 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RA13_12225 f2a6883dbc862ddfd3204afd38bcd104 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 87 113 1.3E-14 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RA13_12225 f2a6883dbc862ddfd3204afd38bcd104 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 41 60 1.3E-14 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RA13_12225 f2a6883dbc862ddfd3204afd38bcd104 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 12 33 1.3E-14 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RA13_02690 0e2d578ab71bec41d7c8bc097d217d6e 281 Pfam PF06724 Domain of Unknown Function (DUF1206) 206 274 1.4E-19 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 RA13_02690 0e2d578ab71bec41d7c8bc097d217d6e 281 Pfam PF06724 Domain of Unknown Function (DUF1206) 30 97 1.5E-18 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 RA13_02690 0e2d578ab71bec41d7c8bc097d217d6e 281 Pfam PF06724 Domain of Unknown Function (DUF1206) 114 180 2.0E-19 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 RA13_07920 4ed70547df6d2df773692f68151866db 200 Gene3D G3DSA:3.10.290.10 91 185 1.0E-74 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_07920 4ed70547df6d2df773692f68151866db 200 SUPERFAMILY SSF55174 2 200 3.79E-66 T 13-10-2018 RA13_07920 4ed70547df6d2df773692f68151866db 200 ProSitePatterns PS00632 Ribosomal protein S4 signature. 90 114 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07920 4ed70547df6d2df773692f68151866db 200 SMART SM00363 92 156 2.8E-18 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07920 4ed70547df6d2df773692f68151866db 200 SMART SM01390 3 91 3.9E-45 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RA13_07920 4ed70547df6d2df773692f68151866db 200 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 200 35.868 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RA13_07920 4ed70547df6d2df773692f68151866db 200 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 200 1.7E-84 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RA13_07920 4ed70547df6d2df773692f68151866db 200 Gene3D G3DSA:1.10.1050.10 6 200 1.0E-74 T 13-10-2018 RA13_07920 4ed70547df6d2df773692f68151866db 200 Pfam PF01479 S4 domain 93 139 9.2E-21 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07920 4ed70547df6d2df773692f68151866db 200 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 90 9.1E-28 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RA13_14165 ba9ef76c9bf4debafc541ca09df77296 91 SMART SM00411 1 90 3.9E-38 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_14165 ba9ef76c9bf4debafc541ca09df77296 91 SUPERFAMILY SSF47729 1 90 1.77E-31 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RA13_14165 ba9ef76c9bf4debafc541ca09df77296 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-32 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_14165 ba9ef76c9bf4debafc541ca09df77296 91 Gene3D G3DSA:4.10.520.10 1 91 4.6E-36 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RA13_14165 ba9ef76c9bf4debafc541ca09df77296 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 3.8E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_14165 ba9ef76c9bf4debafc541ca09df77296 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 3.8E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_14165 ba9ef76c9bf4debafc541ca09df77296 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 3.8E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RA13_08575 e66750633f1e65d74098c20e4de926ad 574 Gene3D G3DSA:3.40.50.970 371 573 1.4E-70 T 13-10-2018 RA13_08575 e66750633f1e65d74098c20e4de926ad 574 Gene3D G3DSA:3.40.50.970 10 189 1.5E-70 T 13-10-2018 RA13_08575 e66750633f1e65d74098c20e4de926ad 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 18 179 1.5E-55 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RA13_08575 e66750633f1e65d74098c20e4de926ad 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 207 342 9.3E-45 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RA13_08575 e66750633f1e65d74098c20e4de926ad 574 SUPERFAMILY SSF52467 200 368 3.42E-62 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RA13_08575 e66750633f1e65d74098c20e4de926ad 574 SUPERFAMILY SSF52518 14 195 5.16E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_08575 e66750633f1e65d74098c20e4de926ad 574 SUPERFAMILY SSF52518 377 572 4.29E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_08575 e66750633f1e65d74098c20e4de926ad 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 400 548 6.0E-52 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RA13_08575 e66750633f1e65d74098c20e4de926ad 574 Gene3D G3DSA:3.40.50.1220 201 366 2.3E-61 T 13-10-2018 RA13_08575 e66750633f1e65d74098c20e4de926ad 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 18 572 3.7E-281 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 Gene3D G3DSA:1.10.45.10 418 457 2.1E-11 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 44 456 6.0E-192 T 13-10-2018 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 Pfam PF01565 FAD binding domain 41 180 1.9E-41 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 216 456 1.5E-74 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 SUPERFAMILY SSF55103 220 460 2.29E-67 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 Gene3D G3DSA:3.30.465.40 3 238 1.2E-76 T 13-10-2018 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 Gene3D G3DSA:3.30.70.2740 336 417 4.2E-14 T 13-10-2018 RA13_08380 56568a3f6ea7d5fffd9f8733333fe29e 470 SUPERFAMILY SSF56176 5 217 1.36E-70 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RA13_19800 8cb9c23c348929407b3c20f1e8d44d61 289 Pfam PF01740 STAS domain 172 271 5.4E-13 T 13-10-2018 IPR002645 STAS domain RA13_19800 8cb9c23c348929407b3c20f1e8d44d61 289 SUPERFAMILY SSF52091 168 273 2.35E-15 T 13-10-2018 IPR036513 STAS domain superfamily RA13_19800 8cb9c23c348929407b3c20f1e8d44d61 289 Gene3D G3DSA:3.30.750.24 166 281 4.7E-34 T 13-10-2018 IPR036513 STAS domain superfamily RA13_04205 b803a475a76261de119f7a8cd329b36a 314 SUPERFAMILY SSF51735 1 310 1.31E-86 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_04205 b803a475a76261de119f7a8cd329b36a 314 Gene3D G3DSA:3.40.50.720 4 295 4.5E-98 T 13-10-2018 RA13_04205 b803a475a76261de119f7a8cd329b36a 314 Gene3D G3DSA:3.90.25.10 174 307 4.5E-98 T 13-10-2018 RA13_04205 b803a475a76261de119f7a8cd329b36a 314 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 304 8.5E-63 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 Gene3D G3DSA:1.10.10.10 1 82 1.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 Pfam PF03466 LysR substrate binding domain 87 287 2.2E-32 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.0E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 SUPERFAMILY SSF53850 88 290 4.22E-27 T 13-10-2018 RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.2E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.2E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.2E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 Gene3D G3DSA:3.40.190.290 83 286 3.8E-66 T 13-10-2018 RA13_16125 abc7abc8360ec0b57b400c4e5f59a7ae 293 SUPERFAMILY SSF46785 1 87 6.48E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03525 dbed0826a6819173180e56b8a09ad8c7 270 SUPERFAMILY SSF53613 1 264 4.99E-75 T 13-10-2018 IPR029056 Ribokinase-like RA13_03525 dbed0826a6819173180e56b8a09ad8c7 270 Gene3D G3DSA:3.40.1190.20 1 270 1.0E-94 T 13-10-2018 IPR029056 Ribokinase-like RA13_03525 dbed0826a6819173180e56b8a09ad8c7 270 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 3.0E-87 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03525 dbed0826a6819173180e56b8a09ad8c7 270 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 1.2E-89 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 Gene3D G3DSA:3.40.50.300 222 387 4.3E-109 T 13-10-2018 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 Gene3D G3DSA:1.20.120.430 125 459 4.3E-109 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 Pfam PF01926 50S ribosome-binding GTPase 225 336 1.5E-25 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 2 459 34.342 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 Pfam PF12631 MnmE helical domain 127 456 5.1E-60 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 SUPERFAMILY SSF52540 78 375 7.96E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 PRINTS PR00449 Transforming protein P21 ras signature 222 243 3.2E-5 T 13-10-2018 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 PRINTS PR00449 Transforming protein P21 ras signature 262 284 3.2E-5 T 13-10-2018 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 PRINTS PR00449 Transforming protein P21 ras signature 326 339 3.2E-5 T 13-10-2018 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 Gene3D G3DSA:3.30.1360.120 1 124 7.8E-48 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 Pfam PF10396 GTP-binding protein TrmE N-terminus 3 124 1.9E-40 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 9 459 6.1E-132 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 225 373 2.6E-28 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_01830 a0a706b3741f3d51512448fc67871d5c 459 SUPERFAMILY SSF116878 125 459 1.7E-50 T 13-10-2018 RA13_21580 7bd293bd5ae01e36ca887ed5d008c494 441 Gene3D G3DSA:3.20.20.30 1 441 3.9E-171 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_21580 7bd293bd5ae01e36ca887ed5d008c494 441 PIRSF PIRSF000337 3 441 2.7E-167 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RA13_21580 7bd293bd5ae01e36ca887ed5d008c494 441 Pfam PF00296 Luciferase-like monooxygenase 19 382 2.2E-80 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RA13_21580 7bd293bd5ae01e36ca887ed5d008c494 441 SUPERFAMILY SSF51679 5 435 7.2E-144 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_21580 7bd293bd5ae01e36ca887ed5d008c494 441 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 10 429 9.3E-189 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 SUPERFAMILY SSF46894 130 209 4.42E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 2.9E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 3.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 3.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 3.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 SMART SM00421 147 204 8.0E-28 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 Gene3D G3DSA:3.40.50.12740 1 209 1.2E-73 T 13-10-2018 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 SMART SM00448 1 114 7.5E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 SUPERFAMILY SSF52172 1 131 6.4E-35 T 13-10-2018 IPR011006 CheY-like superfamily RA13_18685 344a903e61154a1f22268b3ba135c79d 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_18685 344a903e61154a1f22268b3ba135c79d 215 Pfam PF00072 Response regulator receiver domain 3 114 7.5E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_20205 92521d128e126e2d73d49dc7b7aa2791 440 Pfam PF00860 Permease family 16 402 1.9E-46 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RA13_20205 92521d128e126e2d73d49dc7b7aa2791 440 PIRSF PIRSF005353 1 440 4.1E-173 T 13-10-2018 IPR026033 Purine permease PbuG-like RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 Gene3D G3DSA:1.10.40.30 349 431 1.4E-34 T 13-10-2018 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 2.5E-10 T 13-10-2018 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 2.5E-10 T 13-10-2018 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 2.5E-10 T 13-10-2018 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 2.5E-10 T 13-10-2018 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 Gene3D G3DSA:1.20.200.10 93 348 5.4E-104 T 13-10-2018 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 5.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 5.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 5.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 5.1E-27 T 13-10-2018 IPR000362 Fumarate lyase family RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 SUPERFAMILY SSF48557 3 427 3.14E-142 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 Gene3D G3DSA:1.10.275.10 1 92 3.6E-39 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 Pfam PF00206 Lyase 7 286 2.6E-84 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 SMART SM00998 349 429 2.6E-40 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 428 1.6E-186 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20170 c8abd12feb529bd6f523d01a4faedc62 431 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 427 1.9E-25 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_08810 b6a0d2d945b55e6f3d6e6318c8b8d32d 368 Gene3D G3DSA:3.40.50.10800 29 348 1.2E-83 T 13-10-2018 RA13_08810 b6a0d2d945b55e6f3d6e6318c8b8d32d 368 Pfam PF02445 Quinolinate synthetase A protein 29 366 3.0E-107 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RA13_08810 b6a0d2d945b55e6f3d6e6318c8b8d32d 368 SUPERFAMILY SSF142754 33 366 1.57E-97 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RA13_08810 b6a0d2d945b55e6f3d6e6318c8b8d32d 368 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 21 366 7.9E-128 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RA13_08810 b6a0d2d945b55e6f3d6e6318c8b8d32d 368 Hamap MF_00569 Quinolinate synthase A [nadA]. 22 367 56.931 T 13-10-2018 IPR023515 Quinolinate synthase A, type 3 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RA13_08810 b6a0d2d945b55e6f3d6e6318c8b8d32d 368 Gene3D G3DSA:3.40.50.10800 230 318 1.2E-83 T 13-10-2018 RA13_08810 b6a0d2d945b55e6f3d6e6318c8b8d32d 368 Gene3D G3DSA:3.40.50.10800 112 365 1.2E-83 T 13-10-2018 RA13_18025 64b27f0b1270c23d157be9cfbd300399 384 Pfam PF05145 Transition state regulatory protein AbrB 33 365 7.9E-87 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 RA13_18025 64b27f0b1270c23d157be9cfbd300399 384 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 11 172 1.2E-39 T 13-10-2018 IPR017516 AbrB duplication RA13_18025 64b27f0b1270c23d157be9cfbd300399 384 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 206 365 5.8E-36 T 13-10-2018 IPR017516 AbrB duplication RA13_18025 64b27f0b1270c23d157be9cfbd300399 384 PIRSF PIRSF038991 1 374 2.4E-109 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 Gene3D G3DSA:1.10.10.10 1 74 7.5E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 ProSitePatterns PS00622 LuxR-type HTH domain signature. 26 53 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 SUPERFAMILY SSF46894 8 72 3.4E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 Pfam PF00196 Bacterial regulatory proteins, luxR family 12 64 3.4E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 SMART SM00421 9 66 3.9E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 26 42 1.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 42 54 1.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_08515 8cae6c39ae27257092ec8df22b529a9d 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 12 26 1.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_18405 a767b7499f2a0fc73da03c6eb463473f 500 TIGRFAM TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ 88 490 2.5E-149 T 13-10-2018 IPR023995 Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ RA13_18405 a767b7499f2a0fc73da03c6eb463473f 500 SMART SM00729 171 395 1.3E-48 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RA13_18405 a767b7499f2a0fc73da03c6eb463473f 500 SUPERFAMILY SSF102114 153 484 1.57E-70 T 13-10-2018 RA13_18405 a767b7499f2a0fc73da03c6eb463473f 500 Pfam PF04055 Radical SAM superfamily 179 351 2.1E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_18405 a767b7499f2a0fc73da03c6eb463473f 500 Gene3D G3DSA:3.80.30.20 123 490 2.6E-67 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RA13_05635 2f559c636d1851c7089f7ca9dd9cc1bd 156 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 11 132 9.0E-59 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RA13_05635 2f559c636d1851c7089f7ca9dd9cc1bd 156 Pfam PF01668 SmpB protein 10 150 3.4E-64 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RA13_05635 2f559c636d1851c7089f7ca9dd9cc1bd 156 Hamap MF_00023 SsrA-binding protein [smpB]. 1 155 79.296 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RA13_05635 2f559c636d1851c7089f7ca9dd9cc1bd 156 SUPERFAMILY SSF74982 4 132 2.62E-54 T 13-10-2018 IPR023620 Small protein B RA13_05635 2f559c636d1851c7089f7ca9dd9cc1bd 156 Gene3D G3DSA:2.40.280.10 3 128 1.7E-52 T 13-10-2018 IPR023620 Small protein B RA13_05635 2f559c636d1851c7089f7ca9dd9cc1bd 156 ProSitePatterns PS01317 SsrA-binding protein. 27 39 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site RA13_05635 2f559c636d1851c7089f7ca9dd9cc1bd 156 TIGRFAM TIGR00086 smpB: SsrA-binding protein 9 149 1.2E-60 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 Pfam PF00005 ABC transporter 352 500 4.5E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 Gene3D G3DSA:1.20.1560.10 1 321 1.7E-91 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 Gene3D G3DSA:3.40.50.300 331 580 9.0E-89 T 13-10-2018 RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 SMART SM00382 360 546 2.7E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 SUPERFAMILY SSF52540 329 571 6.35E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 Pfam PF00664 ABC transporter transmembrane region 22 288 1.7E-48 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_16035 e7c39dbc54a9c60155f587813f73d1fa 584 SUPERFAMILY SSF90123 5 317 3.27E-83 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_12615 1eb6a6ed23bb16c2be658d96a80156a6 71 Pfam PF00364 Biotin-requiring enzyme 8 69 3.4E-19 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RA13_12615 1eb6a6ed23bb16c2be658d96a80156a6 71 Gene3D G3DSA:2.40.50.100 3 70 2.8E-26 T 13-10-2018 RA13_12615 1eb6a6ed23bb16c2be658d96a80156a6 71 SUPERFAMILY SSF51230 4 69 1.44E-20 T 13-10-2018 IPR011053 Single hybrid motif RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 Pfam PF02881 SRP54-type protein, helical bundle domain 34 99 3.2E-15 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 Pfam PF00448 SRP54-type protein, GTPase domain 121 320 4.9E-81 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 294 307 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 SUPERFAMILY SSF52540 113 320 1.02E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 SMART SM00963 22 103 7.7E-27 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 SUPERFAMILY SSF47364 18 96 1.11E-21 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 46 321 65.305 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 Gene3D G3DSA:3.40.50.300 112 309 7.6E-115 T 13-10-2018 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 SMART SM00382 119 297 1.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 Gene3D G3DSA:1.20.120.140 20 318 7.6E-115 T 13-10-2018 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 46 320 8.6E-119 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RA13_15205 fa2db2cfc3bee533e33100953362e8dc 329 SMART SM00962 120 321 1.3E-120 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PIRSF PIRSF006615 2 501 4.1E-201 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 Gene3D G3DSA:1.10.1370.30 1 500 1.7E-214 T 13-10-2018 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 447 465 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 292 308 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 333 352 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 245 264 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 265 284 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 228 244 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 379 396 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 402 423 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 148 168 2.4E-85 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 1 495 6.9E-297 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 RA13_11405 3c35783f40b93ca26b7eee8985e43b06 501 SUPERFAMILY SSF55486 7 495 2.56E-115 T 13-10-2018 RA13_17340 397b97d2bbb11410db446d9bbe5b82f8 373 Gene3D G3DSA:3.40.640.10 3 247 2.7E-85 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_17340 397b97d2bbb11410db446d9bbe5b82f8 373 SUPERFAMILY SSF53383 19 365 1.48E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_17340 397b97d2bbb11410db446d9bbe5b82f8 373 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 189 203 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_17340 397b97d2bbb11410db446d9bbe5b82f8 373 PIRSF PIRSF001434 1 366 2.6E-122 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_17340 397b97d2bbb11410db446d9bbe5b82f8 373 Gene3D G3DSA:3.90.1150.10 248 370 1.7E-32 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_17340 397b97d2bbb11410db446d9bbe5b82f8 373 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 362 5.3E-135 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RA13_00970 3ddb99e13acc2d3b01cb2735e58c92f2 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 6 120 1.3E-53 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00970 3ddb99e13acc2d3b01cb2735e58c92f2 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 6 120 30.848 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_00970 3ddb99e13acc2d3b01cb2735e58c92f2 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 7 120 1.7E-49 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_00970 3ddb99e13acc2d3b01cb2735e58c92f2 120 SUPERFAMILY SSF53137 7 118 5.01E-57 T 13-10-2018 RA13_00970 3ddb99e13acc2d3b01cb2735e58c92f2 120 Gene3D G3DSA:3.30.420.100 5 120 2.5E-47 T 13-10-2018 RA13_09480 ed4259cf87620f9bb2db52cbeaa65896 189 Pfam PF01467 Cytidylyltransferase-like 6 162 2.7E-34 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_09480 ed4259cf87620f9bb2db52cbeaa65896 189 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 187 1.8E-57 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RA13_09480 ed4259cf87620f9bb2db52cbeaa65896 189 Gene3D G3DSA:3.40.50.620 1 188 4.0E-67 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_09480 ed4259cf87620f9bb2db52cbeaa65896 189 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 67 6.7E-14 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_09480 ed4259cf87620f9bb2db52cbeaa65896 189 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 188 32.624 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RA13_09480 ed4259cf87620f9bb2db52cbeaa65896 189 SUPERFAMILY SSF52374 1 187 7.41E-54 T 13-10-2018 RA13_07370 0a3e6feb9fc9af5e9309f971cd2e338a 394 Gene3D G3DSA:3.40.50.300 2 228 1.2E-68 T 13-10-2018 RA13_07370 0a3e6feb9fc9af5e9309f971cd2e338a 394 SMART SM00833 256 371 2.7E-51 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RA13_07370 0a3e6feb9fc9af5e9309f971cd2e338a 394 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 256 371 1.0E-28 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RA13_07370 0a3e6feb9fc9af5e9309f971cd2e338a 394 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 207 9.5E-55 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RA13_07370 0a3e6feb9fc9af5e9309f971cd2e338a 394 Gene3D G3DSA:3.30.1220.10 239 371 4.6E-6 T 13-10-2018 IPR036627 CobW-like, C-terminal domain superfamily RA13_07370 0a3e6feb9fc9af5e9309f971cd2e338a 394 SUPERFAMILY SSF52540 3 300 1.59E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19975 7132d48db38eeb46b0df6a65621029e1 131 Pfam PF14112 Immunity protein 22 7 130 1.8E-25 T 13-10-2018 IPR025560 Immunity protein 22 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Gene3D G3DSA:3.40.1110.10 334 536 0.0 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 SUPERFAMILY SSF81653 114 224 9.81E-31 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Gene3D G3DSA:2.70.150.10 16 227 0.0 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 TIGRFAM TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 54 881 2.4E-213 T 13-10-2018 IPR005782 P-type ATPase, subfamily IIA, SERCA-type GO:0005388|GO:0006816|GO:0016021 Reactome: R-HSA-1912420|Reactome: R-HSA-418359|Reactome: R-HSA-5578775|Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 SUPERFAMILY SSF81660 332 533 1.85E-56 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 SUPERFAMILY SSF56784 322 735 8.58E-65 T 13-10-2018 IPR036412 HAD-like superfamily RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 161 175 1.4E-41 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 655 667 1.4E-41 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 551 561 1.4E-41 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 631 650 1.4E-41 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 540 1.4E-41 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 324 338 1.4E-41 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 326 332 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Pfam PF00689 Cation transporting ATPase, C-terminus 715 880 8.7E-54 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Gene3D G3DSA:1.20.1110.10 54 877 0.0 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 SMART SM00831 2 76 1.4E-26 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Pfam PF00702 haloacid dehalogenase-like hydrolase 323 645 1.4E-24 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Pfam PF00122 E1-E2 ATPase 111 304 6.8E-54 T 13-10-2018 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 SUPERFAMILY SSF81665 2 880 8.37E-136 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Pfam PF00690 Cation transporter/ATPase, N-terminus 4 71 1.6E-19 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 600 721 3.7E-37 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 422 575 7.3E-20 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 207 346 4.8E-28 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 83 178 5.0E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 631 647 2.2E-18 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 488 506 2.2E-18 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 603 619 2.2E-18 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 663 688 2.2E-18 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_15355 24aa4ff1e3e4594c8c34155497dc0a37 890 Gene3D G3DSA:3.40.50.1000 321 676 0.0 T 13-10-2018 IPR023214 HAD superfamily RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 Pfam PF12848 ABC transporter 228 318 2.0E-14 T 13-10-2018 IPR032781 ABC-transporter extension domain RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 SMART SM00382 357 521 6.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 SMART SM00382 26 234 2.6E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 Gene3D G3DSA:3.40.50.300 296 541 9.7E-50 T 13-10-2018 RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 Pfam PF00005 ABC transporter 18 189 3.6E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 Pfam PF00005 ABC transporter 349 477 2.1E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 SUPERFAMILY SSF52540 2 240 1.64E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 SUPERFAMILY SSF52540 330 536 9.69E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_02195 f0c4d0ff5fa927b770b97445670bbd9d 541 Gene3D G3DSA:3.40.50.300 4 282 2.7E-62 T 13-10-2018 RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 Gene3D G3DSA:3.40.710.10 322 670 2.3E-173 T 13-10-2018 RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 SUPERFAMILY SSF56519 40 322 8.76E-31 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 Gene3D G3DSA:3.90.1310.10 35 66 1.7E-28 T 13-10-2018 RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 Gene3D G3DSA:1.10.10.1230 67 178 1.7E-28 T 13-10-2018 RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 Pfam PF03717 Penicillin-binding Protein dimerisation domain 45 307 1.5E-25 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 Pfam PF00905 Penicillin binding protein transpeptidase domain 354 662 1.8E-71 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 SUPERFAMILY SSF56601 324 661 2.21E-59 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_16205 1dfbe8384fdbc6665637fa4ba6bbbc30 685 Gene3D G3DSA:3.90.1310.30 203 572 2.3E-173 T 13-10-2018 RA13_07020 97e0555492e7d7ab899f96e4f34b6601 527 SUPERFAMILY SSF103473 7 482 2.49E-29 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_07020 97e0555492e7d7ab899f96e4f34b6601 527 Gene3D G3DSA:1.20.1250.20 265 473 5.4E-7 T 13-10-2018 RA13_07020 97e0555492e7d7ab899f96e4f34b6601 527 Gene3D G3DSA:1.20.1720.10 8 240 1.2E-20 T 13-10-2018 RA13_07020 97e0555492e7d7ab899f96e4f34b6601 527 Pfam PF07690 Major Facilitator Superfamily 28 375 1.5E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_21315 d5d785b59895b85d4a514ab8ec961170 300 Pfam PF00248 Aldo/keto reductase family 15 290 1.0E-59 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_21315 d5d785b59895b85d4a514ab8ec961170 300 PRINTS PR00069 Aldo-keto reductase signature 143 160 1.2E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_21315 d5d785b59895b85d4a514ab8ec961170 300 PRINTS PR00069 Aldo-keto reductase signature 112 130 1.2E-6 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_21315 d5d785b59895b85d4a514ab8ec961170 300 Gene3D G3DSA:3.20.20.100 2 300 3.6E-98 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_21315 d5d785b59895b85d4a514ab8ec961170 300 SUPERFAMILY SSF51430 3 296 8.12E-74 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_18845 9b185fd35f7bd6d44b5a07a824c2cbdf 176 Gene3D G3DSA:3.40.50.360 1 176 6.0E-46 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_18845 9b185fd35f7bd6d44b5a07a824c2cbdf 176 SUPERFAMILY SSF52218 1 169 7.86E-43 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_18845 9b185fd35f7bd6d44b5a07a824c2cbdf 176 Pfam PF03358 NADPH-dependent FMN reductase 44 121 1.9E-11 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RA13_07680 77b8c752a6ce64fad14ac38147828f53 73 SMART SM00420 11 56 0.002 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_07680 77b8c752a6ce64fad14ac38147828f53 73 Gene3D G3DSA:1.10.10.10 10 71 1.6E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07680 77b8c752a6ce64fad14ac38147828f53 73 Pfam PF08220 DeoR-like helix-turn-helix domain 11 53 7.4E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_07680 77b8c752a6ce64fad14ac38147828f53 73 SUPERFAMILY SSF46785 11 59 2.64E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_01305 6ae57b6bb8daeb3c41c24f9998466a88 72 Gene3D G3DSA:1.10.260.40 3 72 2.4E-18 T 13-10-2018 RA13_01305 6ae57b6bb8daeb3c41c24f9998466a88 72 Pfam PF01381 Helix-turn-helix 10 64 1.1E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_01305 6ae57b6bb8daeb3c41c24f9998466a88 72 SMART SM00530 9 64 1.8E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_01305 6ae57b6bb8daeb3c41c24f9998466a88 72 SUPERFAMILY SSF47413 4 70 3.22E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_00125 93f22bd72d43316c75228cc911f23bcf 454 Pfam PF16244 Domain of unknown function (DUF4901) 8 195 7.0E-19 T 13-10-2018 IPR032599 Protein of unknown function DUF4901 RA13_15220 482495139cfdb0cd7592eca805b6f45c 77 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site RA13_15220 482495139cfdb0cd7592eca805b6f45c 77 SUPERFAMILY SSF47336 3 76 8.51E-23 T 13-10-2018 IPR036736 ACP-like superfamily RA13_15220 482495139cfdb0cd7592eca805b6f45c 77 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 55 76 2.0E-5 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RA13_15220 482495139cfdb0cd7592eca805b6f45c 77 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.575 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RA13_15220 482495139cfdb0cd7592eca805b6f45c 77 Pfam PF00550 Phosphopantetheine attachment site 6 73 1.5E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_15220 482495139cfdb0cd7592eca805b6f45c 77 Gene3D G3DSA:1.10.1200.10 1 77 8.0E-29 T 13-10-2018 IPR036736 ACP-like superfamily RA13_15220 482495139cfdb0cd7592eca805b6f45c 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 3 77 6.6E-35 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 Gene3D G3DSA:1.10.287.80 6 281 1.3E-103 T 13-10-2018 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 271 284 - T 13-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 Gene3D G3DSA:3.40.1380.10 61 204 1.3E-103 T 13-10-2018 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 Pfam PF00231 ATP synthase 3 285 1.6E-100 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.9E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 PRINTS PR00126 ATP synthase gamma subunit signature 232 251 1.9E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 PRINTS PR00126 ATP synthase gamma subunit signature 263 284 1.9E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.9E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 SUPERFAMILY SSF52943 2 285 1.7E-92 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 285 36.134 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04050 e4db6616196c3ad4a1f51fdb2b2f44d0 286 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 2 285 3.6E-114 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 SMART SM01086 311 407 6.3E-34 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 Gene3D G3DSA:3.40.50.300 53 309 4.0E-107 T 13-10-2018 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 Pfam PF06689 ClpX C4-type zinc finger 12 48 2.6E-20 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 SUPERFAMILY SSF57716 11 46 1.71E-11 T 13-10-2018 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 SMART SM00994 10 49 8.0E-24 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 SUPERFAMILY SSF52540 59 392 3.4E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 409 53.494 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 1 406 4.3E-216 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 SMART SM00382 108 259 9.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 Pfam PF07724 AAA domain (Cdc48 subfamily) 109 305 2.5E-51 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 Gene3D G3DSA:1.10.8.60 310 417 1.8E-37 T 13-10-2018 RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 Gene3D G3DSA:3.30.50.30 3 50 1.0E-21 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily RA13_08620 8aeaacf77f860a520b02aa873b3a10a0 420 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 389 1.6E-18 T 13-10-2018 IPR019489 Clp ATPase, C-terminal RA13_18590 e7a7451521135dff9ce727a23a2b5bae 581 Pfam PF01546 Peptidase family M20/M25/M40 133 192 1.1E-7 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_18590 e7a7451521135dff9ce727a23a2b5bae 581 SUPERFAMILY SSF53187 6 525 3.93E-30 T 13-10-2018 RA13_18590 e7a7451521135dff9ce727a23a2b5bae 581 PIRSF PIRSF010386 3 556 1.3E-219 T 13-10-2018 IPR012166 Uncharacterised protein family RocB RA13_18590 e7a7451521135dff9ce727a23a2b5bae 581 Gene3D G3DSA:3.40.630.10 1 229 1.7E-31 T 13-10-2018 RA13_14590 fcbaf087f0163fa313062df927867040 248 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 97 117 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RA13_14590 fcbaf087f0163fa313062df927867040 248 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 248 3.0E-70 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_14590 fcbaf087f0163fa313062df927867040 248 SUPERFAMILY SSF52096 8 243 2.33E-42 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_14590 fcbaf087f0163fa313062df927867040 248 Gene3D G3DSA:3.90.226.10 1 223 5.0E-66 T 13-10-2018 RA13_02215 512c7550545745a208667f9fed87482b 211 PIRSF PIRSF038959 1 211 9.8E-53 T 13-10-2018 IPR026272 Immunity protein SdpI RA13_02215 512c7550545745a208667f9fed87482b 211 Pfam PF07853 Protein of unknown function (DUF1648) 9 57 5.6E-13 T 13-10-2018 IPR012867 Domain of unknown function DUF1648 RA13_02215 512c7550545745a208667f9fed87482b 211 Pfam PF13630 SdpI/YhfL protein family 132 198 1.4E-19 T 13-10-2018 IPR025962 SdpI/YhfL protein family RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 112.339 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 Gene3D G3DSA:1.10.8.420 1 53 4.3E-20 T 13-10-2018 RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 Gene3D G3DSA:3.40.1360.10 77 198 5.0E-50 T 13-10-2018 RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 SMART SM00493 80 165 3.8E-19 T 13-10-2018 IPR006171 TOPRIM domain RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 TIGRFAM TIGR00615 recR: recombination protein RecR 1 196 1.6E-91 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 Pfam PF13662 Toprim domain 80 171 9.3E-26 T 13-10-2018 IPR006171 TOPRIM domain RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 Pfam PF02132 RecR protein 40 78 1.6E-17 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger RA13_01635 93e84cac26f0ee333d10c00f79b22f7a 198 SUPERFAMILY SSF111304 1 198 2.22E-79 T 13-10-2018 IPR023627 Recombination protein RecR RA13_01445 84d9fae6fbff4784075f92aeda84d676 76 ProDom PD057826 YABK 4 76 1.0E-33 T 13-10-2018 IPR020115 Anti-sigma-F factor Fin GO:0010468 RA13_01445 84d9fae6fbff4784075f92aeda84d676 76 Pfam PF10955 Protein of unknown function (DUF2757) 1 76 1.2E-36 T 13-10-2018 IPR020115 Anti-sigma-F factor Fin GO:0010468 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 SUPERFAMILY SSF52096 41 368 3.48E-71 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 SUPERFAMILY SSF50156 95 175 3.93E-17 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 Gene3D G3DSA:2.30.42.10 104 190 2.7E-95 T 13-10-2018 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 Pfam PF01471 Putative peptidoglycan binding domain 385 440 1.4E-11 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 104 171 6.9E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 Pfam PF03572 Peptidase family S41 201 362 1.0E-49 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 Gene3D G3DSA:3.90.226.10 191 361 2.7E-95 T 13-10-2018 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 55 381 3.9E-125 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 SUPERFAMILY SSF47090 375 445 7.98E-13 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 SMART SM00228 104 175 3.4E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 Gene3D G3DSA:3.30.750.44 49 339 2.7E-95 T 13-10-2018 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 Gene3D G3DSA:1.10.101.10 373 452 5.6E-13 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_11815 086a5e37bcd1a7dac1d216298031db31 466 SMART SM00245 176 364 5.8E-77 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RA13_13105 bb5920cb7dfca295a0abf19a4f64e56d 318 Gene3D G3DSA:3.40.50.1820 2 316 2.1E-92 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_13105 bb5920cb7dfca295a0abf19a4f64e56d 318 Pfam PF07859 alpha/beta hydrolase fold 78 285 6.2E-65 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RA13_13105 bb5920cb7dfca295a0abf19a4f64e56d 318 SUPERFAMILY SSF53474 37 306 1.72E-73 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_08225 2af8c89c26488160e69ff5b93430d552 261 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 231 1.5E-22 T 13-10-2018 RA13_08225 2af8c89c26488160e69ff5b93430d552 261 Gene3D G3DSA:1.20.120.710 14 130 1.4E-48 T 13-10-2018 RA13_08225 2af8c89c26488160e69ff5b93430d552 261 Gene3D G3DSA:3.40.50.1000 2 254 1.4E-48 T 13-10-2018 IPR023214 HAD superfamily RA13_08225 2af8c89c26488160e69ff5b93430d552 261 SUPERFAMILY SSF56784 1 259 2.1E-42 T 13-10-2018 IPR036412 HAD-like superfamily RA13_08225 2af8c89c26488160e69ff5b93430d552 261 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 104 225 1.4E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_08225 2af8c89c26488160e69ff5b93430d552 261 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 113 231 6.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 4.1E-114 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.4E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.4E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.4E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.4E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.4E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.4E-42 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 Pfam PF00318 Ribosomal protein S2 9 224 2.2E-102 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 228 44.166 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 Gene3D G3DSA:3.40.50.10490 10 215 4.6E-97 T 13-10-2018 RA13_14935 66ba95d491a51a0da89de50dd298336e 243 SUPERFAMILY SSF52313 6 232 1.83E-101 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily RA13_14935 66ba95d491a51a0da89de50dd298336e 243 Gene3D G3DSA:1.10.287.610 97 152 4.6E-97 T 13-10-2018 RA13_19325 b833dc576d80e9d4d1eab28988130e24 254 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 1.6E-27 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 RA13_19325 b833dc576d80e9d4d1eab28988130e24 254 SUPERFAMILY SSF46689 1 73 1.51E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_19325 b833dc576d80e9d4d1eab28988130e24 254 Gene3D G3DSA:1.10.10.10 2 74 6.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19325 b833dc576d80e9d4d1eab28988130e24 254 SUPERFAMILY SSF53697 85 247 3.64E-23 T 13-10-2018 RA13_19325 b833dc576d80e9d4d1eab28988130e24 254 Pfam PF01380 SIS domain 110 218 4.4E-17 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RA13_19325 b833dc576d80e9d4d1eab28988130e24 254 Gene3D G3DSA:3.40.50.10490 82 254 2.9E-25 T 13-10-2018 RA13_19850 c87ac16fc24fadc72dda4acc66d9108b 217 SUPERFAMILY SSF52266 4 211 4.37E-57 T 13-10-2018 RA13_19850 c87ac16fc24fadc72dda4acc66d9108b 217 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 8 190 4.1E-13 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RA13_19850 c87ac16fc24fadc72dda4acc66d9108b 217 Gene3D G3DSA:3.40.50.1110 4 216 1.4E-66 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RA13_08235 b7c826b880cb044226c5936f45f6e956 242 Gene3D G3DSA:2.20.25.10 205 242 2.0E-11 T 13-10-2018 RA13_08235 b7c826b880cb044226c5936f45f6e956 242 Gene3D G3DSA:3.40.50.2300 1 125 1.1E-31 T 13-10-2018 RA13_08235 b7c826b880cb044226c5936f45f6e956 242 SUPERFAMILY SSF52172 1 124 1.42E-28 T 13-10-2018 IPR011006 CheY-like superfamily RA13_08235 b7c826b880cb044226c5936f45f6e956 242 Pfam PF04397 LytTr DNA-binding domain 146 240 9.5E-30 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RA13_08235 b7c826b880cb044226c5936f45f6e956 242 Pfam PF00072 Response regulator receiver domain 4 113 6.0E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_08235 b7c826b880cb044226c5936f45f6e956 242 SMART SM00850 144 241 8.7E-37 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RA13_08235 b7c826b880cb044226c5936f45f6e956 242 SMART SM00448 2 113 5.9E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_08235 b7c826b880cb044226c5936f45f6e956 242 Gene3D G3DSA:2.40.50.40 135 204 1.0E-13 T 13-10-2018 RA13_19190 48b0d03f96ee89c42442f1a81595835d 399 Gene3D G3DSA:1.20.1250.20 10 200 6.2E-31 T 13-10-2018 RA13_19190 48b0d03f96ee89c42442f1a81595835d 399 Gene3D G3DSA:1.20.1250.20 203 395 6.6E-13 T 13-10-2018 RA13_19190 48b0d03f96ee89c42442f1a81595835d 399 Pfam PF07690 Major Facilitator Superfamily 17 335 2.9E-33 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19190 48b0d03f96ee89c42442f1a81595835d 399 SUPERFAMILY SSF103473 11 384 2.88E-53 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_05915 3ac142ae2d700649c2affbfffb5b1c2c 372 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 202 366 4.7E-29 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_05915 3ac142ae2d700649c2affbfffb5b1c2c 372 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 5 368 8.1E-95 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_05915 3ac142ae2d700649c2affbfffb5b1c2c 372 Gene3D G3DSA:3.30.300.210 219 369 1.4E-41 T 13-10-2018 IPR038501 Spore germination GerAC superfamily RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 SUPERFAMILY SSF55120 46 238 3.08E-46 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 Gene3D G3DSA:3.10.290.10 1 63 5.2E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 SUPERFAMILY SSF55174 2 67 2.75E-16 T 13-10-2018 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 SMART SM00363 2 65 4.9E-16 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 Gene3D G3DSA:3.30.70.580 64 223 1.2E-57 T 13-10-2018 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 Pfam PF00849 RNA pseudouridylate synthase 62 196 1.8E-25 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 Pfam PF01479 S4 domain 2 48 8.9E-16 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 Gene3D G3DSA:3.30.70.1560 123 215 1.2E-57 T 13-10-2018 RA13_10840 be1b6d754c29e7714f74acf9a3682118 244 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 226 1.3E-52 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RA13_03985 98015d83c8cb040414eacc17705ebf7d 346 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 12 214 1.2E-70 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 RA13_03985 98015d83c8cb040414eacc17705ebf7d 346 Pfam PF03481 Putative GTP-binding controlling metal-binding 205 341 3.5E-26 T 13-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain RA13_03985 98015d83c8cb040414eacc17705ebf7d 346 Gene3D G3DSA:3.40.50.11030 221 346 7.8E-39 T 13-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily RA13_03985 98015d83c8cb040414eacc17705ebf7d 346 Gene3D G3DSA:3.90.870.10 7 219 4.8E-84 T 13-10-2018 RA13_03985 98015d83c8cb040414eacc17705ebf7d 346 SUPERFAMILY SSF55821 18 210 2.69E-67 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RA13_03985 98015d83c8cb040414eacc17705ebf7d 346 PIRSF PIRSF004930 1 346 6.9E-133 T 13-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 RA13_03985 98015d83c8cb040414eacc17705ebf7d 346 Pfam PF01300 Telomere recombination 27 203 3.0E-58 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 RA13_03705 9f2cd845ba1db50864a4262ba5018848 691 SUPERFAMILY SSF56601 219 661 1.53E-111 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_03705 9f2cd845ba1db50864a4262ba5018848 691 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 73 609 8.7E-174 T 13-10-2018 RA13_03705 9f2cd845ba1db50864a4262ba5018848 691 Gene3D G3DSA:1.10.3810.10 65 260 2.8E-75 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_03705 9f2cd845ba1db50864a4262ba5018848 691 Pfam PF00912 Transglycosylase 64 237 4.3E-63 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_03705 9f2cd845ba1db50864a4262ba5018848 691 Gene3D G3DSA:3.40.710.10 261 666 5.5E-111 T 13-10-2018 RA13_03705 9f2cd845ba1db50864a4262ba5018848 691 SUPERFAMILY SSF53955 53 262 6.75E-73 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_03705 9f2cd845ba1db50864a4262ba5018848 691 Pfam PF00905 Penicillin binding protein transpeptidase domain 330 571 8.0E-29 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_12970 61d0455012aed659928da0cf2c7cbda6 152 Pfam PF00583 Acetyltransferase (GNAT) family 29 134 1.4E-20 T 13-10-2018 IPR000182 GNAT domain RA13_12970 61d0455012aed659928da0cf2c7cbda6 152 SUPERFAMILY SSF55729 1 145 1.69E-31 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_12970 61d0455012aed659928da0cf2c7cbda6 152 Gene3D G3DSA:3.40.630.30 44 151 3.6E-28 T 13-10-2018 RA13_12970 61d0455012aed659928da0cf2c7cbda6 152 Gene3D G3DSA:1.10.287.900 1 42 1.3E-8 T 13-10-2018 IPR027455 Spermine/spermidine acetyltransferase, N-terminal KEGG: 00330+2.3.1.57|MetaCyc: PWY-0|MetaCyc: PWY-6117|MetaCyc: PWY-6922 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 154 6.9E-30 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 28 58 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 Gene3D G3DSA:1.10.1740.10 2 74 6.3E-22 T 13-10-2018 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 Pfam PF04542 Sigma-70 region 2 6 72 4.7E-19 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 TIGRFAM TIGR02950 SigM_subfam: RNA polymerase sigma factor, SigM family 2 156 2.2E-70 T 13-10-2018 IPR014296 RNA polymerase sigma-M, bacillaceae GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 SUPERFAMILY SSF88946 4 81 4.19E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 Pfam PF08281 Sigma-70, region 4 105 152 4.6E-12 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 SUPERFAMILY SSF88659 93 156 6.92E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_18565 7affa846b2f199cae5fd4ccf9daef357 163 Gene3D G3DSA:1.10.10.10 94 158 8.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_17580 e87861680a312e16303f1af677e1cec2 358 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 301 3.9E-13 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_17580 e87861680a312e16303f1af677e1cec2 358 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_17580 e87861680a312e16303f1af677e1cec2 358 Gene3D G3DSA:3.40.50.300 4 332 1.0E-98 T 13-10-2018 RA13_17580 e87861680a312e16303f1af677e1cec2 358 Pfam PF00005 ABC transporter 28 186 1.5E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_17580 e87861680a312e16303f1af677e1cec2 358 SUPERFAMILY SSF52540 7 257 1.81E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17580 e87861680a312e16303f1af677e1cec2 358 SMART SM00382 36 244 6.2E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_17580 e87861680a312e16303f1af677e1cec2 358 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 236 322 9.4E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Pfam PF07949 YbbR-like protein 143 228 1.0E-15 T 13-10-2018 IPR012505 YbbR-like RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Pfam PF07949 YbbR-like protein 344 394 4.8E-5 T 13-10-2018 IPR012505 YbbR-like RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Pfam PF07949 YbbR-like protein 55 135 1.7E-11 T 13-10-2018 IPR012505 YbbR-like RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Pfam PF07949 YbbR-like protein 237 316 2.7E-18 T 13-10-2018 IPR012505 YbbR-like RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Gene3D G3DSA:2.170.120.40 146 232 1.6E-9 T 13-10-2018 RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Gene3D G3DSA:2.170.120.40 234 319 1.2E-20 T 13-10-2018 RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Gene3D G3DSA:2.170.120.30 42 145 2.0E-27 T 13-10-2018 RA13_00660 b535f3536ef952ab0324d5f170f37918 479 Gene3D G3DSA:2.170.120.30 323 421 2.7E-14 T 13-10-2018 RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 301 307 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 Gene3D G3DSA:3.30.2130.30 8 247 1.3E-126 T 13-10-2018 RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 Pfam PF01170 Putative RNA methylase family UPF0020 164 368 9.1E-67 T 13-10-2018 IPR000241 Putative RNA methylase domain RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 197 208 - T 13-10-2018 IPR000241 Putative RNA methylase domain RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 SUPERFAMILY SSF53335 145 362 1.97E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 Pfam PF02926 THUMP domain 18 155 1.7E-19 T 13-10-2018 IPR004114 THUMP domain GO:0003723 RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 Gene3D G3DSA:3.40.50.150 162 367 1.3E-126 T 13-10-2018 RA13_11355 11c6f9dbea29f7be94c758b4d13a8f12 385 SMART SM00981 57 156 1.0E-8 T 13-10-2018 IPR004114 THUMP domain GO:0003723 RA13_04250 7e8f497fd3f7efc6529ffce25f5b7740 402 Gene3D G3DSA:1.10.3430.10 1 402 3.2E-144 T 13-10-2018 IPR029020 Ammonium/urea transporter RA13_04250 7e8f497fd3f7efc6529ffce25f5b7740 402 Pfam PF00909 Ammonium Transporter Family 7 400 2.5E-134 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RA13_04250 7e8f497fd3f7efc6529ffce25f5b7740 402 SUPERFAMILY SSF111352 3 380 1.57E-126 T 13-10-2018 RA13_04250 7e8f497fd3f7efc6529ffce25f5b7740 402 ProSitePatterns PS01219 Ammonium transporters signature. 157 182 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RA13_04250 7e8f497fd3f7efc6529ffce25f5b7740 402 TIGRFAM TIGR00836 amt: ammonium transporter 5 400 1.7E-144 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 Pfam PF01245 Ribosomal protein L19 4 112 3.7E-54 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 4.3E-53 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 PIRSF PIRSF002191 1 115 5.5E-52 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 32.98 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 SUPERFAMILY SSF50104 2 114 4.81E-49 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15165 a7f99dbc6dcdb8b39ac890379e63faf3 115 Gene3D G3DSA:2.30.30.790 2 115 5.0E-15 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_21750 2f58c809ac1fc3e2779eea0fdd6f85b7 109 Pfam PF10925 Protein of unknown function (DUF2680) 40 96 1.5E-23 T 13-10-2018 IPR024485 Protein of unknown function DUF2680 RA13_21750 2f58c809ac1fc3e2779eea0fdd6f85b7 109 ProDom PD673109 PRECURSOR SIGNAL YCKD ORF4 DOMAIN 27 109 4.0E-26 T 13-10-2018 IPR024485 Protein of unknown function DUF2680 RA13_19185 2b86197bde807823e37d701f678aeb96 50 Hamap MF_01504 Small, acid-soluble spore protein K [sspK]. 2 50 18.155 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 RA13_19185 2b86197bde807823e37d701f678aeb96 50 TIGRFAM TIGR03091 SASP_sspK: small, acid-soluble spore protein K 17 48 2.7E-23 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 RA13_19185 2b86197bde807823e37d701f678aeb96 50 Pfam PF08176 Small acid-soluble spore protein K family 2 48 1.6E-29 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 RA13_21645 363901f78193283ce8d5c9b542ce1e76 268 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 70 83 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RA13_21645 363901f78193283ce8d5c9b542ce1e76 268 Gene3D G3DSA:3.40.190.10 45 257 3.8E-68 T 13-10-2018 RA13_21645 363901f78193283ce8d5c9b542ce1e76 268 SUPERFAMILY SSF53850 1 266 1.2E-63 T 13-10-2018 RA13_21645 363901f78193283ce8d5c9b542ce1e76 268 Gene3D G3DSA:3.40.190.10 129 226 3.8E-68 T 13-10-2018 RA13_21645 363901f78193283ce8d5c9b542ce1e76 268 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 264 1.1E-56 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_21645 363901f78193283ce8d5c9b542ce1e76 268 SMART SM00062 46 265 2.9E-82 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_17985 454ca69322f3275ce6e4bb054184497b 1130 Pfam PF13476 AAA domain 6 235 1.9E-12 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain RA13_17985 454ca69322f3275ce6e4bb054184497b 1130 Gene3D G3DSA:3.40.50.300 1 294 1.9E-38 T 13-10-2018 RA13_17985 454ca69322f3275ce6e4bb054184497b 1130 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1002 1085 8.4E-15 T 13-10-2018 RA13_17985 454ca69322f3275ce6e4bb054184497b 1130 SUPERFAMILY SSF52540 6 1113 2.79E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17985 454ca69322f3275ce6e4bb054184497b 1130 Gene3D G3DSA:3.40.50.300 860 1126 7.5E-28 T 13-10-2018 RA13_02165 03704e65008454ee8f025a71a9cf55b7 281 Gene3D G3DSA:3.30.310.160 70 193 7.8E-69 T 13-10-2018 RA13_02165 03704e65008454ee8f025a71a9cf55b7 281 Gene3D G3DSA:3.10.450.660 48 273 7.8E-69 T 13-10-2018 RA13_02165 03704e65008454ee8f025a71a9cf55b7 281 Pfam PF09648 YycH protein 37 270 3.0E-59 T 13-10-2018 IPR018604 Regulatory protein YycH-like GO:0016021 RA13_06230 152e0867dd55c38f163e053fbd0aac96 574 Pfam PF00881 Nitroreductase family 417 568 3.7E-6 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_06230 152e0867dd55c38f163e053fbd0aac96 574 SUPERFAMILY SSF55469 428 568 5.76E-7 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_06230 152e0867dd55c38f163e053fbd0aac96 574 Gene3D G3DSA:3.40.109.10 358 573 6.5E-36 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_06230 152e0867dd55c38f163e053fbd0aac96 574 Gene3D G3DSA:3.40.50.720 163 316 5.2E-14 T 13-10-2018 RA13_06230 152e0867dd55c38f163e053fbd0aac96 574 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 400 569 4.4E-25 T 13-10-2018 IPR020051 SagB-type dehydrogenase domain RA13_12120 4756261423a5262961b7347ecdea37b0 62 Pfam PF09693 Phage uncharacterised protein (Phage_XkdX) 5 46 2.1E-12 T 13-10-2018 IPR010022 Protein of unknown function XkdX RA13_12120 4756261423a5262961b7347ecdea37b0 62 TIGRFAM TIGR01669 phage_XkdX: phage uncharacterized protein, XkdX family 2 46 2.3E-25 T 13-10-2018 IPR010022 Protein of unknown function XkdX RA13_09240 2754f37acccced4f0012082356780b10 299 SUPERFAMILY SSF46785 1 82 1.22E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_09240 2754f37acccced4f0012082356780b10 299 Gene3D G3DSA:1.10.10.10 1 91 1.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09240 2754f37acccced4f0012082356780b10 299 Gene3D G3DSA:3.40.190.290 92 297 1.3E-53 T 13-10-2018 RA13_09240 2754f37acccced4f0012082356780b10 299 SUPERFAMILY SSF53850 91 293 5.87E-40 T 13-10-2018 RA13_09240 2754f37acccced4f0012082356780b10 299 Pfam PF03466 LysR substrate binding domain 91 287 1.6E-44 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_09240 2754f37acccced4f0012082356780b10 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09240 2754f37acccced4f0012082356780b10 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09240 2754f37acccced4f0012082356780b10 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09240 2754f37acccced4f0012082356780b10 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.0E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_04210 70b0cc92cd44b6777b9245582d14780c 334 SUPERFAMILY SSF51735 5 269 9.82E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_04210 70b0cc92cd44b6777b9245582d14780c 334 Pfam PF02719 Polysaccharide biosynthesis protein 8 290 1.8E-101 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RA13_04210 70b0cc92cd44b6777b9245582d14780c 334 Gene3D G3DSA:3.90.25.30 168 324 5.0E-125 T 13-10-2018 RA13_04210 70b0cc92cd44b6777b9245582d14780c 334 Gene3D G3DSA:3.40.50.720 5 312 5.0E-125 T 13-10-2018 RA13_19740 69b77a42b0578872531fcb9deaa776ee 322 SUPERFAMILY SSF51735 3 320 1.79E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19740 69b77a42b0578872531fcb9deaa776ee 322 Gene3D G3DSA:3.40.50.720 2 182 1.8E-50 T 13-10-2018 RA13_19740 69b77a42b0578872531fcb9deaa776ee 322 Gene3D G3DSA:3.90.25.10 183 322 1.2E-39 T 13-10-2018 RA13_19740 69b77a42b0578872531fcb9deaa776ee 322 Pfam PF16363 GDP-mannose 4,6 dehydratase 10 312 8.3E-58 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 4 675 1.8E-286 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 Gene3D G3DSA:1.10.8.540 486 575 4.3E-32 T 13-10-2018 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 221 235 2.2E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 121 137 2.2E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 59 78 2.2E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 22 35 2.2E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 140 158 2.2E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 170 187 2.2E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 126 149 - T 13-10-2018 IPR025505 FHIPEP conserved site RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 Pfam PF00771 FHIPEP family 15 667 6.6E-274 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 PIRSF PIRSF005419 1 677 2.4E-259 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 Gene3D G3DSA:3.40.30.60 342 485 3.2E-53 T 13-10-2018 RA13_14985 ac22ef738bbfb9e6fe8c1870aa0b8cc6 677 Gene3D G3DSA:1.10.490.80 577 675 2.9E-28 T 13-10-2018 RA13_01420 ddaf40a267ffb4ddf6de92306024e28c 86 SMART SM00363 1 63 2.2E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01420 ddaf40a267ffb4ddf6de92306024e28c 86 PIRSF PIRSF038881 1 86 1.7E-35 T 13-10-2018 IPR025490 RNA-binding protein, HP1423 type RA13_01420 ddaf40a267ffb4ddf6de92306024e28c 86 SUPERFAMILY SSF55174 1 76 1.1E-19 T 13-10-2018 RA13_01420 ddaf40a267ffb4ddf6de92306024e28c 86 Gene3D G3DSA:3.10.290.10 1 85 2.3E-24 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_01420 ddaf40a267ffb4ddf6de92306024e28c 86 Pfam PF01479 S4 domain 1 46 3.7E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 3.1E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 SUPERFAMILY SSF46785 2 86 8.0E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 Pfam PF07702 UTRA domain 97 232 1.4E-31 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 4.3E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 4.3E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 Gene3D G3DSA:3.40.1410.10 77 239 2.7E-31 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 Gene3D G3DSA:1.10.10.10 2 74 2.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 SMART SM00866 95 233 1.1E-27 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 SMART SM00345 14 73 4.6E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_14760 262a94c6ed1e55b323d7b062b16aacea 241 SUPERFAMILY SSF64288 62 239 1.73E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_07770 2b3fe6f668f4ec9df189b603fecb9b3d 201 SUPERFAMILY SSF50249 92 200 3.92E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_07770 2b3fe6f668f4ec9df189b603fecb9b3d 201 Pfam PF01588 Putative tRNA binding domain 96 197 4.6E-27 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RA13_07770 2b3fe6f668f4ec9df189b603fecb9b3d 201 Pfam PF14794 Domain of unknown function (DUF4479) 23 91 8.4E-26 T 13-10-2018 IPR027855 Domain of unknown function DUF4479 RA13_07770 2b3fe6f668f4ec9df189b603fecb9b3d 201 Gene3D G3DSA:3.30.1940.10 18 92 5.0E-76 T 13-10-2018 IPR037154 YtpR-like superfamily RA13_07770 2b3fe6f668f4ec9df189b603fecb9b3d 201 Gene3D G3DSA:2.40.50.140 5 199 5.0E-76 T 13-10-2018 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 SMART SM00354 7 78 1.3E-32 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 SUPERFAMILY SSF53822 65 327 8.64E-60 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 Gene3D G3DSA:3.40.50.2300 165 299 1.8E-66 T 13-10-2018 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 SUPERFAMILY SSF47413 7 66 2.2E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 ProSitePatterns PS00356 LacI-type HTH domain signature. 10 28 - T 13-10-2018 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 Pfam PF13377 Periplasmic binding protein-like domain 178 337 4.4E-25 T 13-10-2018 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 Gene3D G3DSA:3.40.50.2300 70 320 1.8E-66 T 13-10-2018 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 Gene3D G3DSA:1.10.260.40 6 67 1.5E-19 T 13-10-2018 RA13_11385 bf0aca2e3f19cd9e0114eed0b9f4d2d7 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 55 5.8E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_18015 c2da7244adaedd86c150bcb82c6650ed 575 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 178 455 5.2E-36 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RA13_18015 c2da7244adaedd86c150bcb82c6650ed 575 Gene3D G3DSA:3.10.105.10 345 545 2.6E-15 T 13-10-2018 RA13_18015 c2da7244adaedd86c150bcb82c6650ed 575 Pfam PF12793 Sugar transport-related sRNA regulator N-term 3 104 2.6E-22 T 13-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain RA13_18015 c2da7244adaedd86c150bcb82c6650ed 575 SUPERFAMILY SSF53850 131 573 1.56E-70 T 13-10-2018 RA13_18015 c2da7244adaedd86c150bcb82c6650ed 575 Gene3D G3DSA:3.40.190.10 123 344 3.5E-38 T 13-10-2018 RA13_18015 c2da7244adaedd86c150bcb82c6650ed 575 PIRSF PIRSF002741 37 103 36.0 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RA13_18015 c2da7244adaedd86c150bcb82c6650ed 575 PIRSF PIRSF002741 124 575 2.6E-37 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RA13_11260 6309643e8658b4ebfc3eea6b31a16bb7 232 Gene3D G3DSA:1.10.10.10 1 115 2.7E-40 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_11260 6309643e8658b4ebfc3eea6b31a16bb7 232 SUPERFAMILY SSF158499 130 195 1.44E-18 T 13-10-2018 IPR034829 DnaD-like domain superfamily RA13_11260 6309643e8658b4ebfc3eea6b31a16bb7 232 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 129 201 4.4E-24 T 13-10-2018 IPR006343 DnaD domain RA13_11260 6309643e8658b4ebfc3eea6b31a16bb7 232 Gene3D G3DSA:1.10.10.630 124 200 1.6E-29 T 13-10-2018 IPR034829 DnaD-like domain superfamily RA13_11260 6309643e8658b4ebfc3eea6b31a16bb7 232 Pfam PF07261 Replication initiation and membrane attachment 130 202 1.8E-23 T 13-10-2018 IPR006343 DnaD domain RA13_10225 e089913be983334f6dd7805afd0d4046 285 Pfam PF05067 Manganese containing catalase 1 278 4.0E-67 T 13-10-2018 IPR007760 Manganese catalase RA13_10225 e089913be983334f6dd7805afd0d4046 285 Gene3D G3DSA:1.20.1260.130 3 285 4.8E-103 T 13-10-2018 RA13_10225 e089913be983334f6dd7805afd0d4046 285 SUPERFAMILY SSF47240 1 284 1.1E-85 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_15200 8c4921e7b023a86a5ce800c4d26f111b 110 Pfam PF04297 Putative helix-turn-helix protein, YlxM / p13 like 3 98 1.7E-41 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like RA13_15200 8c4921e7b023a86a5ce800c4d26f111b 110 Hamap MF_00245 UPF0122 protein . 3 103 22.31 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like RA13_15200 8c4921e7b023a86a5ce800c4d26f111b 110 Gene3D G3DSA:1.10.10.10 1 110 4.8E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15200 8c4921e7b023a86a5ce800c4d26f111b 110 SUPERFAMILY SSF88659 3 103 3.18E-33 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_05725 783f6b7b20812404c2e34a123700c200 276 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 44 61 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 Gene3D G3DSA:3.20.20.100 1 276 1.1E-131 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_05725 783f6b7b20812404c2e34a123700c200 276 PRINTS PR00069 Aldo-keto reductase signature 197 221 4.5E-54 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 PRINTS PR00069 Aldo-keto reductase signature 40 64 4.5E-54 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 PRINTS PR00069 Aldo-keto reductase signature 160 189 4.5E-54 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 PRINTS PR00069 Aldo-keto reductase signature 126 143 4.5E-54 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 PRINTS PR00069 Aldo-keto reductase signature 96 114 4.5E-54 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 PIRSF PIRSF000097 2 120 1.3E-41 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 PIRSF PIRSF000097 115 272 3.0E-54 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 230 245 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_05725 783f6b7b20812404c2e34a123700c200 276 SUPERFAMILY SSF51430 7 268 4.98E-99 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_05725 783f6b7b20812404c2e34a123700c200 276 Pfam PF00248 Aldo/keto reductase family 29 262 1.4E-56 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_05725 783f6b7b20812404c2e34a123700c200 276 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 126 143 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_21310 e7a51460f76286fb3852387866e28364 695 Pfam PF08279 HTH domain 6 62 8.8E-8 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_21310 e7a51460f76286fb3852387866e28364 695 Pfam PF08279 HTH domain 92 145 5.3E-6 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_21310 e7a51460f76286fb3852387866e28364 695 SUPERFAMILY SSF63520 308 404 1.11E-18 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_21310 e7a51460f76286fb3852387866e28364 695 Gene3D G3DSA:1.10.10.10 71 150 7.7E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21310 e7a51460f76286fb3852387866e28364 695 Gene3D G3DSA:1.10.10.10 1 62 6.7E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21310 e7a51460f76286fb3852387866e28364 695 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 553 681 9.1E-9 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_21310 e7a51460f76286fb3852387866e28364 695 Gene3D G3DSA:3.40.50.2300 412 498 2.8E-13 T 13-10-2018 RA13_21310 e7a51460f76286fb3852387866e28364 695 SUPERFAMILY SSF52794 412 496 4.03E-13 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_21310 e7a51460f76286fb3852387866e28364 695 SUPERFAMILY SSF55804 543 682 2.27E-14 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_21310 e7a51460f76286fb3852387866e28364 695 SUPERFAMILY SSF46785 1 45 6.35E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21310 e7a51460f76286fb3852387866e28364 695 SUPERFAMILY SSF63520 196 294 2.49E-22 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_21310 e7a51460f76286fb3852387866e28364 695 Gene3D G3DSA:3.40.930.10 536 682 6.3E-10 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_21310 e7a51460f76286fb3852387866e28364 695 Pfam PF00874 PRD domain 210 293 7.2E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_21310 e7a51460f76286fb3852387866e28364 695 Pfam PF00874 PRD domain 316 403 7.5E-20 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_21310 e7a51460f76286fb3852387866e28364 695 Gene3D G3DSA:1.10.1790.10 201 295 6.4E-20 T 13-10-2018 RA13_21310 e7a51460f76286fb3852387866e28364 695 Gene3D G3DSA:1.10.1790.10 309 405 1.7E-16 T 13-10-2018 RA13_21310 e7a51460f76286fb3852387866e28364 695 SUPERFAMILY SSF46785 87 152 1.51E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21310 e7a51460f76286fb3852387866e28364 695 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 414 489 1.3E-6 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 1.6E-73 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 SUPERFAMILY SSF52540 95 370 3.29E-98 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 SUPERFAMILY SSF47917 372 499 1.62E-47 T 13-10-2018 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 499 51.569 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 27 92 1.0E-19 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 Gene3D G3DSA:1.20.150.20 372 499 9.2E-52 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 SUPERFAMILY SSF50615 10 94 2.94E-31 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 PIRSF PIRSF039088 1 501 5.1E-251 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 Gene3D G3DSA:3.40.50.300 94 371 6.1E-128 T 13-10-2018 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 486 2.7E-47 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 499 7.3E-264 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04045 1790a6ca04a5169539a982ae5f97b0bc 502 Gene3D G3DSA:2.40.30.20 1 93 1.6E-37 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF56801 429 990 3.79E-168 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF00975 Thioesterase domain 2141 2296 5.8E-31 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SMART SM00824 Thioesterase 2143 2301 0.0054 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:1.10.1200.10 967 1049 1.9E-28 T 13-10-2018 IPR036736 ACP-like superfamily RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF47336 971 1043 8.11E-20 T 13-10-2018 IPR036736 ACP-like superfamily RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.40.50.1820 2044 2386 2.7E-116 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF52777 13 187 1.56E-35 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF47336 2047 2118 1.7E-20 T 13-10-2018 IPR036736 ACP-like superfamily RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 488 893 2.5E-136 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1551 1969 2.2E-139 T 13-10-2018 IPR010071 Amino acid adenylation domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.40.50.12780 457 861 3.9E-142 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF00501 AMP-binding enzyme 467 869 4.3E-108 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF00501 AMP-binding enzyme 1530 1945 1.3E-105 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF00550 Phosphopantetheine attachment site 2056 2118 3.9E-14 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF00550 Phosphopantetheine attachment site 980 1042 2.4E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF13193 AMP-binding enzyme C-terminal domain 1953 2028 6.5E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF13193 AMP-binding enzyme C-terminal domain 877 952 1.2E-14 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.30.559.10 13 209 8.1E-60 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 ProSitePatterns PS00455 Putative AMP-binding domain signature. 617 628 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.30.559.30 210 432 6.1E-69 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF56801 1490 2066 1.7E-169 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1680 1691 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF53474 2121 2384 1.02E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.30.559.30 1244 1496 3.1E-153 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF52777 1248 1515 1.33E-60 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF00668 Condensation domain 1059 1511 6.2E-98 T 13-10-2018 IPR001242 Condensation domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Pfam PF00668 Condensation domain 11 445 1.7E-73 T 13-10-2018 IPR001242 Condensation domain RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF52777 193 455 4.67E-43 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.30.559.10 1062 1434 3.1E-153 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SUPERFAMILY SSF52777 1063 1235 8.67E-48 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SMART SM00823 Phosphopantetheine attachment site 977 1046 1.7E-6 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 SMART SM00823 Phosphopantetheine attachment site 2056 2122 8.1E-8 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.30.300.30 1940 2043 4.0E-39 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.30.300.30 863 966 2.6E-38 T 13-10-2018 RA13_06515 9ae3636147ca91f721601fa7f3d65891 2394 Gene3D G3DSA:3.40.50.12780 1515 1939 1.7E-145 T 13-10-2018 RA13_09605 2df337bdc2ab2ff4d8d0a21b1cd0fd25 148 Gene3D G3DSA:1.10.1510.10 1 91 1.1E-29 T 13-10-2018 RA13_09605 2df337bdc2ab2ff4d8d0a21b1cd0fd25 148 Pfam PF09424 Yqey-like protein 5 147 2.2E-53 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 RA13_09605 2df337bdc2ab2ff4d8d0a21b1cd0fd25 148 Gene3D G3DSA:1.10.10.410 92 148 2.5E-27 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RA13_09605 2df337bdc2ab2ff4d8d0a21b1cd0fd25 148 SUPERFAMILY SSF89095 1 147 1.41E-42 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 SUPERFAMILY SSF46894 152 227 2.07E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 SUPERFAMILY SSF52172 3 136 2.13E-34 T 13-10-2018 IPR011006 CheY-like superfamily RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 SMART SM00448 4 117 9.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 196 1.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 180 1.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 196 208 1.0E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 165 220 7.9E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 Pfam PF00072 Response regulator receiver domain 6 118 5.3E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 Gene3D G3DSA:3.40.50.12740 4 226 4.3E-70 T 13-10-2018 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 ProSitePatterns PS00622 LuxR-type HTH domain signature. 180 207 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_04785 32b0f2c6870e6e489d3114c473f9d31f 229 SMART SM00421 163 220 9.7E-29 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 Gene3D G3DSA:1.10.260.40 2 61 2.4E-23 T 13-10-2018 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 Gene3D G3DSA:3.40.50.2300 164 329 5.8E-87 T 13-10-2018 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.6E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 SUPERFAMILY SSF47413 3 61 1.01E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 1.7E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 1.7E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 SMART SM00354 2 72 3.7E-36 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 SUPERFAMILY SSF53822 62 334 2.83E-85 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 Gene3D G3DSA:3.40.50.2300 63 324 5.8E-87 T 13-10-2018 RA13_17885 e2384b6e1464bddd2d4573e5e863ea04 344 Pfam PF13377 Periplasmic binding protein-like domain 172 332 1.4E-46 T 13-10-2018 RA13_09485 a563122cec40886e1303dba1ec82b86a 186 SUPERFAMILY SSF109604 4 181 2.04E-36 T 13-10-2018 RA13_09485 a563122cec40886e1303dba1ec82b86a 186 Pfam PF01966 HD domain 18 130 1.5E-16 T 13-10-2018 IPR006674 HD domain RA13_09485 a563122cec40886e1303dba1ec82b86a 186 SMART SM00471 14 141 7.8E-11 T 13-10-2018 IPR003607 HD/PDEase domain RA13_09485 a563122cec40886e1303dba1ec82b86a 186 TIGRFAM TIGR00277 HDIG: HDIG domain 18 94 7.2E-8 T 13-10-2018 IPR006675 HDIG domain RA13_09485 a563122cec40886e1303dba1ec82b86a 186 Gene3D G3DSA:1.10.3210.10 1 185 1.4E-60 T 13-10-2018 RA13_09485 a563122cec40886e1303dba1ec82b86a 186 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 10 180 9.3E-76 T 13-10-2018 IPR005249 Conserved hypothetical protein CHP00488 RA13_00345 dd2f5edbc629e9fad4a1ee8b62368f65 322 Gene3D G3DSA:3.30.70.100 1 97 7.5E-30 T 13-10-2018 RA13_00345 dd2f5edbc629e9fad4a1ee8b62368f65 322 Gene3D G3DSA:3.40.250.10 102 249 3.5E-44 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RA13_00345 dd2f5edbc629e9fad4a1ee8b62368f65 322 Pfam PF00581 Rhodanese-like domain 120 210 1.4E-10 T 13-10-2018 IPR001763 Rhodanese-like domain RA13_00345 dd2f5edbc629e9fad4a1ee8b62368f65 322 SMART SM00450 115 216 8.3E-19 T 13-10-2018 IPR001763 Rhodanese-like domain RA13_00345 dd2f5edbc629e9fad4a1ee8b62368f65 322 SUPERFAMILY SSF52821 88 246 3.57E-35 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RA13_00345 dd2f5edbc629e9fad4a1ee8b62368f65 322 Pfam PF12368 Rhodanase C-terminal 222 288 6.8E-13 T 13-10-2018 IPR022111 Rhodanase, C-terminal RA13_00345 dd2f5edbc629e9fad4a1ee8b62368f65 322 Hamap MF_00469 UPF0176 protein YceA [yceA]. 3 267 39.37 T 13-10-2018 IPR020936 Uncharacterised protein family UPF0176 RA13_04790 0144dedf2d211e81094477b0d35b3257 280 Gene3D G3DSA:3.40.50.10170 1 151 1.2E-57 T 13-10-2018 RA13_04790 0144dedf2d211e81094477b0d35b3257 280 SUPERFAMILY SSF82549 1 278 2.88E-95 T 13-10-2018 RA13_04790 0144dedf2d211e81094477b0d35b3257 280 Gene3D G3DSA:3.30.1180.10 152 280 4.1E-48 T 13-10-2018 RA13_04790 0144dedf2d211e81094477b0d35b3257 280 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 277 1.2E-105 T 13-10-2018 IPR003797 DegV RA13_04790 0144dedf2d211e81094477b0d35b3257 280 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 278 5.8E-101 T 13-10-2018 IPR003797 DegV RA13_00285 d410862a7216c04e494faebb958dbe76 318 Gene3D G3DSA:3.40.50.2300 1 127 3.2E-21 T 13-10-2018 RA13_00285 d410862a7216c04e494faebb958dbe76 318 SMART SM00448 1 114 9.7E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_00285 d410862a7216c04e494faebb958dbe76 318 Pfam PF08664 YcbB domain 161 299 1.2E-48 T 13-10-2018 IPR013972 YcbB domain RA13_00285 d410862a7216c04e494faebb958dbe76 318 Pfam PF00072 Response regulator receiver domain 4 114 1.1E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_00285 d410862a7216c04e494faebb958dbe76 318 SUPERFAMILY SSF52172 2 177 4.7E-23 T 13-10-2018 IPR011006 CheY-like superfamily RA13_15400 1fd06da73b3193dc37f8511153f6caf7 216 Gene3D G3DSA:3.40.50.2020 4 216 5.3E-60 T 13-10-2018 RA13_15400 1fd06da73b3193dc37f8511153f6caf7 216 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 216 29.099 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15400 1fd06da73b3193dc37f8511153f6caf7 216 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 13 183 9.6E-55 T 13-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RA13_15400 1fd06da73b3193dc37f8511153f6caf7 216 SUPERFAMILY SSF53271 13 210 6.03E-50 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_15400 1fd06da73b3193dc37f8511153f6caf7 216 Pfam PF00156 Phosphoribosyl transferase domain 50 177 7.7E-17 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RA13_10535 e699825eb5fdb0ab545be10e00891556 306 Gene3D G3DSA:3.20.20.100 1 296 7.4E-106 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_10535 e699825eb5fdb0ab545be10e00891556 306 Pfam PF00248 Aldo/keto reductase family 15 293 6.4E-62 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_10535 e699825eb5fdb0ab545be10e00891556 306 SUPERFAMILY SSF51430 1 296 3.93E-78 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_10535 e699825eb5fdb0ab545be10e00891556 306 PRINTS PR00069 Aldo-keto reductase signature 37 61 6.2E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_10535 e699825eb5fdb0ab545be10e00891556 306 PRINTS PR00069 Aldo-keto reductase signature 134 151 6.2E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_10535 e699825eb5fdb0ab545be10e00891556 306 PRINTS PR00069 Aldo-keto reductase signature 103 121 6.2E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_11755 efea71f33d6eef42025166c0ab73411b 92 Pfam PF14122 YokU-like protein, putative antitoxin 3 89 9.3E-40 T 13-10-2018 IPR022451 Conserved hypothetical protein CHP03829, YokU RA13_11755 efea71f33d6eef42025166c0ab73411b 92 TIGRFAM TIGR03829 YokU_near_AblA: uncharacterized protein, YokU family 3 91 8.1E-41 T 13-10-2018 IPR022451 Conserved hypothetical protein CHP03829, YokU RA13_11755 efea71f33d6eef42025166c0ab73411b 92 TIGRFAM TIGR03831 YgiT_finger: YgiT-type zinc finger domain 4 50 2.4E-8 T 13-10-2018 IPR022453 Zinc finger, MqsA-type RA13_00145 0dbe279dfb5859e501272e5cb3d96a15 310 PRINTS PR00069 Aldo-keto reductase signature 142 159 2.7E-15 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00145 0dbe279dfb5859e501272e5cb3d96a15 310 PRINTS PR00069 Aldo-keto reductase signature 242 266 2.7E-15 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00145 0dbe279dfb5859e501272e5cb3d96a15 310 PRINTS PR00069 Aldo-keto reductase signature 111 129 2.7E-15 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00145 0dbe279dfb5859e501272e5cb3d96a15 310 PRINTS PR00069 Aldo-keto reductase signature 45 69 2.7E-15 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_00145 0dbe279dfb5859e501272e5cb3d96a15 310 SUPERFAMILY SSF51430 3 309 1.31E-93 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_00145 0dbe279dfb5859e501272e5cb3d96a15 310 Gene3D G3DSA:3.20.20.100 2 310 5.9E-113 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_00145 0dbe279dfb5859e501272e5cb3d96a15 310 Pfam PF00248 Aldo/keto reductase family 16 307 7.4E-72 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_10745 565a810c85458e4d26bca9e7c8995534 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 120 8.4E-29 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RA13_10745 565a810c85458e4d26bca9e7c8995534 342 Gene3D G3DSA:3.30.360.10 125 330 1.3E-80 T 13-10-2018 RA13_10745 565a810c85458e4d26bca9e7c8995534 342 SUPERFAMILY SSF55347 130 305 2.88E-21 T 13-10-2018 RA13_10745 565a810c85458e4d26bca9e7c8995534 342 SUPERFAMILY SSF51735 1 136 1.83E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10745 565a810c85458e4d26bca9e7c8995534 342 Gene3D G3DSA:3.40.50.720 4 314 1.3E-80 T 13-10-2018 RA13_10745 565a810c85458e4d26bca9e7c8995534 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 145 191 1.9E-7 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RA13_06385 556f744dd0743ec014ecf0f8ca3fd471 108 Gene3D G3DSA:3.40.30.30 1 105 1.2E-41 T 13-10-2018 IPR038218 YuzD-like superfamily RA13_06385 556f744dd0743ec014ecf0f8ca3fd471 108 SUPERFAMILY SSF52833 1 105 5.52E-45 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_06385 556f744dd0743ec014ecf0f8ca3fd471 108 PIRSF PIRSF010603 1 106 2.4E-51 T 13-10-2018 IPR009190 Protein of unknown function DUF1462 RA13_06385 556f744dd0743ec014ecf0f8ca3fd471 108 Pfam PF07315 Protein of unknown function (DUF1462) 9 100 1.1E-42 T 13-10-2018 IPR009190 Protein of unknown function DUF1462 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 PRINTS PR00124 ATP synthase C subunit signature 43 68 5.6E-20 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 PRINTS PR00124 ATP synthase C subunit signature 5 24 5.6E-20 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 PRINTS PR00124 ATP synthase C subunit signature 26 41 5.6E-20 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 ProSitePatterns PS00605 ATP synthase c subunit signature. 33 54 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 Pfam PF00137 ATP synthase subunit C 4 66 9.4E-15 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 SUPERFAMILY SSF81333 3 69 1.83E-19 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 14 69 1.0E-20 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 Gene3D G3DSA:1.20.20.10 1 68 1.6E-27 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04030 b6963ad52c5360a9a725016ca58df5b7 70 Hamap MF_01396 ATP synthase subunit c [atpH]. 3 68 15.863 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 SUPERFAMILY SSF53067 160 351 8.25E-67 T 13-10-2018 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 Gene3D G3DSA:1.20.1270.10 477 580 7.4E-25 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 Gene3D G3DSA:3.30.420.40 159 337 2.1E-150 T 13-10-2018 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 SUPERFAMILY SSF100934 477 580 4.32E-13 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 605 37.063 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 Gene3D G3DSA:2.60.34.10 348 476 1.5E-58 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 307 321 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 SUPERFAMILY SSF53067 2 157 7.2E-58 T 13-10-2018 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 304 320 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 439 455 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 358 377 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 172 182 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 112 132 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 335 355 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 PRINTS PR00301 70kDa heat shock protein signature 53 61 1.5E-79 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 166 179 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 Gene3D G3DSA:3.90.640.10 198 279 2.1E-150 T 13-10-2018 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 Gene3D G3DSA:3.30.420.40 5 347 2.1E-150 T 13-10-2018 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 SUPERFAMILY SSF100920 354 510 5.49E-62 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 573 2.7E-285 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RA13_09570 4bfdc13f0054497932ea901cf5cbb39e 612 Pfam PF00012 Hsp70 protein 4 573 1.3E-249 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RA13_06755 28ac7dca44ce86397f7b770f1feb905c 205 SUPERFAMILY SSF53098 4 179 2.05E-29 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_06755 28ac7dca44ce86397f7b770f1feb905c 205 SMART SM00479 5 182 9.3E-34 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RA13_06755 28ac7dca44ce86397f7b770f1feb905c 205 Pfam PF00929 Exonuclease 7 173 7.8E-27 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RA13_06755 28ac7dca44ce86397f7b770f1feb905c 205 Gene3D G3DSA:3.30.420.10 2 198 8.4E-40 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RA13_08855 841637cb89d98172c3b2c564d9436534 244 Pfam PF04794 YdjC-like protein 4 229 9.9E-57 T 13-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like RA13_08855 841637cb89d98172c3b2c564d9436534 244 Gene3D G3DSA:3.20.20.370 1 244 8.3E-77 T 13-10-2018 RA13_08855 841637cb89d98172c3b2c564d9436534 244 SUPERFAMILY SSF88713 1 244 4.45E-69 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_04270 a8c5330c03578e24e86ca3ab40aa0879 490 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 20 456 3.8E-150 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RA13_04270 a8c5330c03578e24e86ca3ab40aa0879 490 Gene3D G3DSA:1.10.4160.10 4 477 6.0E-136 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily RA13_04270 a8c5330c03578e24e86ca3ab40aa0879 490 TIGRFAM TIGR00800 ncs1: NCS1 nucleoside transporter family 15 451 9.8E-148 T 13-10-2018 IPR012681 Nucleobase cation symporter-1, NCS1 GO:0016020|GO:0022857|GO:0055085 RA13_15740 8ffc6ac05686e46b566e05a8c8343ac6 207 SUPERFAMILY SSF81452 20 204 3.27E-54 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15740 8ffc6ac05686e46b566e05a8c8343ac6 207 Gene3D G3DSA:1.20.120.80 21 206 1.1E-50 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15740 8ffc6ac05686e46b566e05a8c8343ac6 207 Pfam PF00510 Cytochrome c oxidase subunit III 28 204 3.6E-18 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 82 299 2.8E-87 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 SUPERFAMILY SSF53649 4 509 1.96E-74 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 SUPERFAMILY SSF64158 77 310 5.89E-95 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 Pfam PF01676 Metalloenzyme superfamily 4 499 2.8E-78 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 PIRSF PIRSF001492 1 511 8.8E-210 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 Gene3D G3DSA:3.40.720.10 5 509 2.9E-235 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 Gene3D G3DSA:3.40.1450.10 77 312 2.9E-235 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 4 510 50.82 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_05465 ed9b29c0645196c19bde1ea6fa23bc57 511 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5 509 7.2E-216 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Gene3D G3DSA:1.20.990.10 710 831 8.3E-70 T 13-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Gene3D G3DSA:3.40.50.80 894 1054 3.3E-54 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Pfam PF00067 Cytochrome P450 17 449 1.4E-83 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Gene3D G3DSA:3.40.50.360 485 636 1.5E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 SUPERFAMILY SSF48264 5 454 4.06E-108 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 SUPERFAMILY SSF52343 893 1052 6.55E-44 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Gene3D G3DSA:2.40.30.10 675 883 8.3E-70 T 13-10-2018 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 SUPERFAMILY SSF63380 664 889 1.29E-65 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Pfam PF00258 Flavodoxin 490 622 4.7E-25 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Pfam PF00175 Oxidoreductase NAD-binding domain 906 1015 1.3E-14 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 396 405 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Pfam PF00667 FAD binding domain 667 873 2.9E-42 T 13-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PIRSF PIRSF000209 1 1055 0.0 T 13-10-2018 IPR023206 Bifunctional cytochrome P450/NADPH--cytochrome P450 reductase GO:0003958|GO:0055114|GO:0070330 KEGG: 00071+1.14.14.1|KEGG: 00140+1.14.14.1|KEGG: 00232+1.14.14.1|KEGG: 00380+1.14.14.1|KEGG: 00590+1.14.14.1|KEGG: 00591+1.14.14.1|KEGG: 00627+1.14.14.1|KEGG: 00830+1.14.14.1|KEGG: 00980+1.14.14.1|KEGG: 00982+1.14.14.1|MetaCyc: PWY-5451|MetaCyc: PWY-5665|MetaCyc: PWY-6398|MetaCyc: PWY-6992|MetaCyc: PWY-7466|MetaCyc: PWY-7826 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 SUPERFAMILY SSF52218 485 637 1.9E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00369 Flavodoxin signature 536 547 5.6E-12 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00369 Flavodoxin signature 567 577 5.6E-12 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00369 Flavodoxin signature 489 502 5.6E-12 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00369 Flavodoxin signature 592 611 5.6E-12 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 Gene3D G3DSA:1.10.630.10 4 473 6.6E-171 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 868 877 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 934 943 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 905 924 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 978 994 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1001 1009 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 947 958 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 700 710 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_09225 3b61d7bb2e80963aaa0a43e024d3ad37 1055 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 833 840 1.3E-31 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 SUPERFAMILY SSF52540 92 359 3.32E-96 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 345 354 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 TIGRFAM TIGR03497 FliI_clade2: flagellar protein export ATPase FliI 20 433 2.6E-207 T 13-10-2018 IPR022425 Flagellar export ATPase FliI, clade 2 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 Gene3D G3DSA:3.40.50.12240 11 436 6.9E-154 T 13-10-2018 RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 SMART SM00382 157 338 3.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 13 434 2.4E-207 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 22 88 1.7E-6 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_15065 b1394f360bdacd74cea9c34a567e1221 438 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 145 354 1.1E-76 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_18035 6393617b445a6fb79b04e705cccab439 499 Pfam PF01494 FAD binding domain 5 339 4.6E-94 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 RA13_18035 6393617b445a6fb79b04e705cccab439 499 Gene3D G3DSA:3.40.30.120 390 496 1.4E-16 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 Gene3D G3DSA:3.30.70.2450 179 263 1.3E-104 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 274 289 1.3E-40 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 150 165 1.3E-40 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 1.3E-40 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 325 341 1.3E-40 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 325 1.3E-40 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 305 1.3E-40 T 13-10-2018 RA13_18035 6393617b445a6fb79b04e705cccab439 499 Gene3D G3DSA:3.50.50.60 8 338 1.3E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18035 6393617b445a6fb79b04e705cccab439 499 SUPERFAMILY SSF51905 5 350 1.91E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_16235 cd2aa33ac70cc37e546f03566ee831b8 79 Pfam PF11132 Transcriptional regulator protein (SplA) 3 74 1.6E-38 T 13-10-2018 IPR022608 Transcription regulator SplA RA13_16235 cd2aa33ac70cc37e546f03566ee831b8 79 ProDom PD028055 SPLA TRANSCRIPTIONAL TRANSCRIPTION REGULATOR REGULATION 5 74 3.0E-31 T 13-10-2018 RA13_03550 73271719a48c0f293c2befe72e071230 226 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 58 67 - T 13-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RA13_03550 73271719a48c0f293c2befe72e071230 226 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 6 221 40.876 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RA13_03550 73271719a48c0f293c2befe72e071230 226 SMART SM00986 50 210 1.5E-35 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RA13_03550 73271719a48c0f293c2befe72e071230 226 Gene3D G3DSA:3.40.470.10 1 225 6.3E-103 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RA13_03550 73271719a48c0f293c2befe72e071230 226 SUPERFAMILY SSF52141 4 222 2.83E-93 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RA13_03550 73271719a48c0f293c2befe72e071230 226 Pfam PF03167 Uracil DNA glycosylase superfamily 55 209 1.0E-25 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RA13_03550 73271719a48c0f293c2befe72e071230 226 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 7 214 1.8E-86 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RA13_03550 73271719a48c0f293c2befe72e071230 226 SMART SM00987 50 210 1.5E-35 T 13-10-2018 RA13_08470 b3eec010f87a2145726e4c60e180d2b9 493 Gene3D G3DSA:2.60.40.1180 14 488 2.5E-193 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RA13_08470 b3eec010f87a2145726e4c60e180d2b9 493 Gene3D G3DSA:3.20.20.80 18 376 2.5E-193 T 13-10-2018 RA13_08470 b3eec010f87a2145726e4c60e180d2b9 493 SUPERFAMILY SSF51011 357 491 2.7E-30 T 13-10-2018 RA13_08470 b3eec010f87a2145726e4c60e180d2b9 493 SMART SM00813 294 485 2.1E-81 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RA13_08470 b3eec010f87a2145726e4c60e180d2b9 493 SUPERFAMILY SSF51445 17 376 8.45E-96 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_08470 b3eec010f87a2145726e4c60e180d2b9 493 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 294 485 5.0E-44 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 Gene3D G3DSA:3.30.870.10 325 470 8.0E-32 T 13-10-2018 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 Gene3D G3DSA:3.30.870.10 130 319 2.8E-41 T 13-10-2018 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 Pfam PF13396 Phospholipase_D-nuclease N-terminal 42 82 1.3E-6 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 Pfam PF13091 PLD-like domain 342 467 1.2E-32 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 Pfam PF13091 PLD-like domain 155 297 7.4E-14 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 38 500 3.3E-137 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 SUPERFAMILY SSF56024 289 474 2.2E-44 T 13-10-2018 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 SUPERFAMILY SSF56024 106 331 6.5E-50 T 13-10-2018 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 Hamap MF_01916 Cardiolipin synthase. 34 500 39.034 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 SMART SM00155 413 440 2.5E-7 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RA13_03840 1ec59ce5fbc5b162748603f1f1dc2987 500 SMART SM00155 237 264 3.2E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RA13_03215 6cc190af0cc16b4942ab207792a01237 363 Gene3D G3DSA:3.20.10.10 171 339 1.2E-136 T 13-10-2018 RA13_03215 6cc190af0cc16b4942ab207792a01237 363 PIRSF PIRSF006468 1 358 1.2E-135 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RA13_03215 6cc190af0cc16b4942ab207792a01237 363 SUPERFAMILY SSF56752 4 353 3.4E-117 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RA13_03215 6cc190af0cc16b4942ab207792a01237 363 Pfam PF01063 Amino-transferase class IV 70 312 2.6E-35 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RA13_03215 6cc190af0cc16b4942ab207792a01237 363 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 44 356 6.9E-122 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 RA13_03215 6cc190af0cc16b4942ab207792a01237 363 ProSitePatterns PS00770 Aminotransferases class-IV signature. 233 262 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 RA13_03215 6cc190af0cc16b4942ab207792a01237 363 Gene3D G3DSA:3.30.470.10 25 352 1.2E-136 T 13-10-2018 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 SUPERFAMILY SSF52009 465 582 4.97E-30 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 472 2.1E-195 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 Pfam PF00391 PEP-utilising enzyme, mobile domain 504 575 9.1E-22 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 PRINTS PR01050 Pyruvate kinase family signature 294 312 2.2E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 PRINTS PR01050 Pyruvate kinase family signature 217 243 2.2E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 PRINTS PR01050 Pyruvate kinase family signature 313 329 2.2E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 PRINTS PR01050 Pyruvate kinase family signature 244 268 2.2E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.2E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.2E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 PRINTS PR01050 Pyruvate kinase family signature 269 293 2.2E-80 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 Gene3D G3DSA:2.40.33.10 71 167 5.2E-153 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 Gene3D G3DSA:3.20.20.60 4 332 5.2E-153 T 13-10-2018 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 Pfam PF00224 Pyruvate kinase, barrel domain 2 343 1.7E-158 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 SUPERFAMILY SSF52935 323 473 1.57E-41 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 SUPERFAMILY SSF50800 70 167 2.62E-27 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RA13_08105 7d021bcb91678a563d0557f5746d5725 585 Gene3D G3DSA:3.50.30.10 474 585 6.3E-37 T 13-10-2018 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 SUPERFAMILY SSF51621 2 344 3.45E-105 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 Pfam PF02887 Pyruvate kinase, alpha/beta domain 358 469 4.9E-34 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_08105 7d021bcb91678a563d0557f5746d5725 585 Gene3D G3DSA:3.40.1380.20 340 473 5.9E-43 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 RA13_16870 9780bfbadb4709bfd16bf63eb072c5e7 87 Pfam PF04688 SPP1 phage holin 4 82 4.3E-29 T 13-10-2018 IPR006479 Holin RA13_16870 9780bfbadb4709bfd16bf63eb072c5e7 87 ProDom PD008023 HOLIN TRANSMEMBRANE MEMBRANE PROPHAGE FAMILY BHLB SPP1 5'REGION HOLIN ORF050 5 87 4.0E-23 T 13-10-2018 IPR006479 Holin RA13_16870 9780bfbadb4709bfd16bf63eb072c5e7 87 TIGRFAM TIGR01592 holin_SPP1: holin, SPP1 family 5 85 2.7E-31 T 13-10-2018 IPR006479 Holin RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 SUPERFAMILY SSF57783 4 98 3.06E-36 T 13-10-2018 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 SUPERFAMILY SSF56731 117 427 3.79E-102 T 13-10-2018 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 1.2E-150 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 SUPERFAMILY SSF48024 462 563 1.23E-8 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Pfam PF01807 CHC2 zinc finger 6 99 6.3E-40 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 SMART SM00493 262 333 3.3E-15 T 13-10-2018 IPR006171 TOPRIM domain RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Pfam PF08275 DNA primase catalytic core, N-terminal domain 128 255 3.1E-45 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Gene3D G3DSA:3.40.1360.10 244 368 4.1E-39 T 13-10-2018 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 SMART SM00400 36 90 6.3E-36 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Gene3D G3DSA:1.10.860.10 467 563 4.8E-30 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Hamap MF_00974 DNA primase [dnaG]. 4 593 30.187 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Gene3D G3DSA:3.90.980.10 112 243 1.5E-53 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Gene3D G3DSA:3.90.580.10 1 100 1.4E-41 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Pfam PF10410 DnaB-helicase binding domain of primase 371 425 4.5E-10 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 Pfam PF13155 Toprim-like 265 349 3.3E-18 T 13-10-2018 RA13_09720 9b1a5c0e7a30e19cb123e26eefc7a271 603 PIRSF PIRSF002811 2 603 1.9E-204 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RA13_19565 50d4e9c16a46dfa681a8431beb50c614 104 Gene3D G3DSA:1.10.760.20 20 104 3.4E-31 T 13-10-2018 IPR038292 YmfJ/YflH superfamily RA13_19565 50d4e9c16a46dfa681a8431beb50c614 104 Pfam PF11588 Protein of unknown function (DUF3243) 25 102 6.5E-28 T 13-10-2018 IPR021637 Protein of unknown function DUF3243 RA13_04005 0ad9b138e4faab1cedc5243f6f00e89b 180 Hamap MF_00800 UPF0340 protein . 1 180 89.301 T 13-10-2018 IPR006340 Protein of unknown function DUF436 RA13_04005 0ad9b138e4faab1cedc5243f6f00e89b 180 SUPERFAMILY SSF110710 1 179 3.4E-77 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like RA13_04005 0ad9b138e4faab1cedc5243f6f00e89b 180 TIGRFAM TIGR01440 TIGR01440: TIGR01440 family protein 9 177 4.8E-71 T 13-10-2018 IPR006340 Protein of unknown function DUF436 RA13_04005 0ad9b138e4faab1cedc5243f6f00e89b 180 PIRSF PIRSF007510 1 180 5.8E-80 T 13-10-2018 IPR006340 Protein of unknown function DUF436 RA13_04005 0ad9b138e4faab1cedc5243f6f00e89b 180 Gene3D G3DSA:3.40.50.10360 1 180 7.5E-78 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like RA13_04005 0ad9b138e4faab1cedc5243f6f00e89b 180 Pfam PF04260 Protein of unknown function (DUF436) 9 177 1.2E-75 T 13-10-2018 IPR006340 Protein of unknown function DUF436 RA13_04005 0ad9b138e4faab1cedc5243f6f00e89b 180 ProDom PD102102 UPF0340 3D-STRUCTURE YWLG SMU.87 STU1894 BT9727_4999 TRANSFERASE TTE0860 SPY1898/M5005_SPY1614 TT1679 14 180 6.0E-78 T 13-10-2018 IPR006340 Protein of unknown function DUF436 RA13_08355 5f3827cd68b8c0b2545ca32a6274aa50 280 SUPERFAMILY SSF161098 9 280 4.3E-66 T 13-10-2018 IPR035906 MetI-like superfamily RA13_08355 5f3827cd68b8c0b2545ca32a6274aa50 280 Gene3D G3DSA:1.10.3720.10 2 271 2.0E-58 T 13-10-2018 IPR035906 MetI-like superfamily RA13_08355 5f3827cd68b8c0b2545ca32a6274aa50 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 271 6.0E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_09915 59a72d6c33c8eb28b33415d6ebc33601 104 SUPERFAMILY SSF89957 1 103 1.31E-31 T 13-10-2018 IPR029756 MTH1187/YkoF-like RA13_09915 59a72d6c33c8eb28b33415d6ebc33601 104 Gene3D G3DSA:3.30.70.930 1 104 1.6E-38 T 13-10-2018 IPR029756 MTH1187/YkoF-like RA13_09915 59a72d6c33c8eb28b33415d6ebc33601 104 TIGRFAM TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family 2 101 1.2E-37 T 13-10-2018 IPR002767 Thiamine-binding protein RA13_09915 59a72d6c33c8eb28b33415d6ebc33601 104 Pfam PF01910 Thiamine-binding protein 4 98 3.7E-33 T 13-10-2018 IPR002767 Thiamine-binding protein RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Pfam PF01568 Molydopterin dinucleotide binding domain 566 670 8.0E-18 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Gene3D G3DSA:3.30.2070.10 433 522 3.1E-154 T 13-10-2018 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 418 435 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Gene3D G3DSA:3.40.50.740 78 478 3.1E-154 T 13-10-2018 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Pfam PF00384 Molybdopterin oxidoreductase 67 473 6.6E-60 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 SUPERFAMILY SSF50692 528 680 2.49E-30 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Gene3D G3DSA:3.40.228.10 145 544 3.1E-154 T 13-10-2018 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Gene3D G3DSA:2.20.25.90 4 69 1.0E-15 T 13-10-2018 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Gene3D G3DSA:2.40.40.20 546 684 2.8E-26 T 13-10-2018 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 SUPERFAMILY SSF53706 12 564 1.83E-163 T 13-10-2018 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 11 63 7.3E-18 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_12385 4d479e7cfb0b4cba01783eddf1ce3576 685 SMART SM00926 9 64 3.1E-19 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 Pfam PF00512 His Kinase A (phospho-acceptor) domain 293 354 4.5E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 Gene3D G3DSA:1.10.287.130 294 353 4.0E-18 T 13-10-2018 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 SMART SM00388 291 356 3.0E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 483 3.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 464 3.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 502 3.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 450 3.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 SMART SM00387 399 505 1.1E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 Pfam PF02743 Cache domain 54 223 1.7E-19 T 13-10-2018 IPR033479 Double Cache domain 1 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 504 1.0E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 SUPERFAMILY SSF55874 358 503 1.01E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 Gene3D G3DSA:3.30.450.20 83 181 5.2E-65 T 13-10-2018 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 Gene3D G3DSA:3.30.565.10 359 505 1.9E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 SUPERFAMILY SSF103190 84 188 9.02E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 Gene3D G3DSA:3.30.450.20 54 232 5.2E-65 T 13-10-2018 RA13_16370 beabc9978e929d06ec2cf5f1b1491992 505 SUPERFAMILY SSF47384 280 356 2.75E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_10395 45727e786149943dd8788b796c412552 414 Hamap MF_01113 DNA polymerase IV [dinB]. 5 357 38.548 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RA13_10395 45727e786149943dd8788b796c412552 414 Gene3D G3DSA:2.30.40.20 25 78 2.9E-58 T 13-10-2018 RA13_10395 45727e786149943dd8788b796c412552 414 SUPERFAMILY SSF56672 5 238 8.09E-84 T 13-10-2018 RA13_10395 45727e786149943dd8788b796c412552 414 Pfam PF11798 IMS family HHH motif 172 201 2.0E-9 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RA13_10395 45727e786149943dd8788b796c412552 414 Gene3D G3DSA:3.30.1490.100 247 354 1.7E-23 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_10395 45727e786149943dd8788b796c412552 414 Pfam PF11799 impB/mucB/samB family C-terminal domain 247 351 2.2E-16 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_10395 45727e786149943dd8788b796c412552 414 Gene3D G3DSA:3.30.70.270 8 168 2.9E-58 T 13-10-2018 RA13_10395 45727e786149943dd8788b796c412552 414 PIRSF PIRSF036603 1 123 2.5E-25 T 13-10-2018 RA13_10395 45727e786149943dd8788b796c412552 414 PIRSF PIRSF036603 123 414 1.9E-17 T 13-10-2018 RA13_10395 45727e786149943dd8788b796c412552 414 Gene3D G3DSA:1.10.150.20 180 233 5.4E-17 T 13-10-2018 RA13_10395 45727e786149943dd8788b796c412552 414 Pfam PF00817 impB/mucB/samB family 11 158 3.2E-51 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_10395 45727e786149943dd8788b796c412552 414 SUPERFAMILY SSF100879 245 343 1.69E-23 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 SUPERFAMILY SSF143597 22 146 3.27E-30 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 Gene3D G3DSA:1.20.1260.110 147 292 3.4E-46 T 13-10-2018 IPR038331 DisA, linker domain superfamily RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 29 141 4.0E-28 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 Gene3D G3DSA:1.10.150.20 293 356 1.1E-25 T 13-10-2018 RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 Pfam PF10635 DisA bacterial checkpoint controller linker region 146 284 7.1E-50 T 13-10-2018 IPR018906 DNA integrity scanning, DisA, linker region RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 Gene3D G3DSA:3.40.1700.10 10 146 1.3E-56 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 Hamap MF_01438 DNA integrity scanning protein DisA [disA]. 7 357 44.999 T 13-10-2018 IPR023763 DNA integrity scanning protein, DisA RA13_01190 cbb9784b62ee7ba4f43335ff36b7dd9f 360 SUPERFAMILY SSF47781 243 357 2.07E-12 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 SUPERFAMILY SSF54631 223 362 4.04E-27 T 13-10-2018 RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 Pfam PF03471 Transporter associated domain 376 450 1.5E-13 T 13-10-2018 IPR005170 Transporter-associated domain RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 SUPERFAMILY SSF56176 373 450 3.54E-14 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 Gene3D G3DSA:3.30.465.10 372 452 8.0E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 SMART SM01091 375 452 1.1E-16 T 13-10-2018 IPR005170 Transporter-associated domain RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 Pfam PF01595 Domain of unknown function DUF21 27 220 4.5E-47 T 13-10-2018 IPR002550 CNNM, transmembrane domain RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 Pfam PF00571 CBS domain 311 359 0.002 T 13-10-2018 IPR000644 CBS domain RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 Pfam PF00571 CBS domain 241 293 9.0E-4 T 13-10-2018 IPR000644 CBS domain RA13_09950 09801d2b918d1944499d0c0a9d7d740b 452 Gene3D G3DSA:3.10.580.10 216 371 2.2E-47 T 13-10-2018 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 248 5.8E-31 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 SUPERFAMILY SSF88659 163 250 2.62E-20 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 SUPERFAMILY SSF88946 6 99 1.49E-24 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 27 249 6.7E-87 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 SUPERFAMILY SSF88659 100 168 1.89E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 PIRSF PIRSF000770 11 253 6.2E-40 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 Gene3D G3DSA:1.10.1740.10 14 96 1.6E-27 T 13-10-2018 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 Pfam PF04545 Sigma-70, region 4 199 247 8.5E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 54 67 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 Pfam PF04542 Sigma-70 region 2 27 99 9.0E-15 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 Gene3D G3DSA:1.20.140.160 98 252 1.1E-43 T 13-10-2018 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 219 245 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 Pfam PF04539 Sigma-70 region 3 106 184 1.5E-10 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 PRINTS PR00046 Major sigma-70 factor signature 219 234 1.2E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 PRINTS PR00046 Major sigma-70 factor signature 54 67 1.2E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 PRINTS PR00046 Major sigma-70 factor signature 234 245 1.2E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 PRINTS PR00046 Major sigma-70 factor signature 202 214 1.2E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_14945 0b3d5b521bdec316c91124846d1992b0 254 PRINTS PR00046 Major sigma-70 factor signature 78 86 1.2E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_00225 6168fd6fca731ca5564775ec7e6798d5 307 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_00225 6168fd6fca731ca5564775ec7e6798d5 307 Pfam PF00005 ABC transporter 21 161 1.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_00225 6168fd6fca731ca5564775ec7e6798d5 307 Gene3D G3DSA:3.40.50.300 2 241 6.1E-60 T 13-10-2018 RA13_00225 6168fd6fca731ca5564775ec7e6798d5 307 SUPERFAMILY SSF52540 4 226 1.68E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00225 6168fd6fca731ca5564775ec7e6798d5 307 SMART SM00382 29 221 4.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 Pfam PF00672 HAMP domain 303 351 2.1E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 SUPERFAMILY SSF58104 323 659 5.36E-70 T 13-10-2018 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 SMART SM00283 384 659 4.7E-93 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 Gene3D G3DSA:1.10.287.950 360 659 5.6E-70 T 13-10-2018 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 Gene3D G3DSA:3.30.450.20 60 264 1.6E-30 T 13-10-2018 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 429 612 1.0E-56 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 SMART SM00319 33 151 9.4E-28 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 Gene3D G3DSA:3.30.450.20 72 183 1.6E-30 T 13-10-2018 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 Pfam PF02743 Cache domain 53 265 2.2E-26 T 13-10-2018 IPR033479 Double Cache domain 1 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 SMART SM00304 303 355 8.4E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 SUPERFAMILY SSF103190 109 189 7.69E-10 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_06895 a7519f3abd9623c7c079d1b2d632a1aa 662 Gene3D G3DSA:1.20.1480.50 271 359 1.4E-13 T 13-10-2018 RA13_06135 8a67bcab0046f0608791b2cef77bca96 292 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 281 2.5E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_06135 8a67bcab0046f0608791b2cef77bca96 292 SUPERFAMILY SSF161098 50 280 6.02E-60 T 13-10-2018 IPR035906 MetI-like superfamily RA13_06135 8a67bcab0046f0608791b2cef77bca96 292 Gene3D G3DSA:1.10.3720.10 46 289 3.3E-73 T 13-10-2018 IPR035906 MetI-like superfamily RA13_13155 9e1cb414e3e99dec70c8d74edbfeee99 107 PIRSF PIRSF000077 1 105 2.2E-28 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RA13_13155 9e1cb414e3e99dec70c8d74edbfeee99 107 Pfam PF00085 Thioredoxin 3 101 5.6E-22 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RA13_13155 9e1cb414e3e99dec70c8d74edbfeee99 107 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RA13_13155 9e1cb414e3e99dec70c8d74edbfeee99 107 Gene3D G3DSA:3.40.30.10 1 106 6.1E-29 T 13-10-2018 RA13_13155 9e1cb414e3e99dec70c8d74edbfeee99 107 SUPERFAMILY SSF52833 3 103 3.79E-31 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_09390 86d6e19e745839cbb2328fd979e119ef 82 Pfam PF00239 Resolvase, N terminal domain 3 80 1.2E-16 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_09390 86d6e19e745839cbb2328fd979e119ef 82 Gene3D G3DSA:3.40.50.1390 1 82 5.3E-20 T 13-10-2018 RA13_09390 86d6e19e745839cbb2328fd979e119ef 82 SMART SM00857 2 82 0.0083 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_09390 86d6e19e745839cbb2328fd979e119ef 82 SUPERFAMILY SSF53041 3 80 1.09E-15 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RA13_18505 f38af0beb3f46a01fda7cbb74701621c 34 ProDom PD047280 YHDX 1 33 7.0E-11 T 13-10-2018 IPR035384 Uncharacterized protein YhdX RA13_18505 f38af0beb3f46a01fda7cbb74701621c 34 Pfam PF17444 Uncharacterized protein YhdX 1 33 7.7E-25 T 13-10-2018 IPR035384 Uncharacterized protein YhdX RA13_09685 64590a0a7ee9d316bbea5be42e72ba7e 47 Pfam PF14006 YqzL-like protein 3 46 1.5E-19 T 13-10-2018 IPR025617 YqzL-like protein RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 4.5E-23 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.5E-23 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.5E-23 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 63 6.3E-28 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 SUPERFAMILY SSF143034 2 62 6.8E-23 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 Pfam PF01632 Ribosomal protein L35 2 62 2.5E-26 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 Gene3D G3DSA:2.40.50.530 1 63 3.2E-22 T 13-10-2018 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_08270 ce48634939c9dc123787f5d0d1987fca 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 19.574 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RA13_06580 b66467cebfc94d8e4059c5e0bb062921 78 ProDom PD058323 YUZF BH2251 4 72 1.0E-22 T 13-10-2018 IPR020139 Protein of unknown function DUF2642 RA13_06580 b66467cebfc94d8e4059c5e0bb062921 78 Pfam PF10842 Protein of unknown function (DUF2642) 8 72 6.8E-28 T 13-10-2018 IPR020139 Protein of unknown function DUF2642 RA13_08925 d6d2c804897bbd2e163f977a626abdc1 342 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 342 46.509 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RA13_08925 d6d2c804897bbd2e163f977a626abdc1 342 Gene3D G3DSA:2.40.10.240 64 162 1.6E-137 T 13-10-2018 RA13_08925 d6d2c804897bbd2e163f977a626abdc1 342 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 342 2.2E-156 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RA13_08925 d6d2c804897bbd2e163f977a626abdc1 342 SUPERFAMILY SSF111337 1 342 2.88E-138 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RA13_08925 d6d2c804897bbd2e163f977a626abdc1 342 Gene3D G3DSA:3.40.1780.10 14 341 1.6E-137 T 13-10-2018 RA13_08925 d6d2c804897bbd2e163f977a626abdc1 342 Pfam PF02547 Queuosine biosynthesis protein 4 341 3.3E-140 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RA13_09955 0633366ebeb835d7fbb02051262bb0c2 317 Gene3D G3DSA:1.20.58.340 241 298 2.8E-15 T 13-10-2018 RA13_09955 0633366ebeb835d7fbb02051262bb0c2 317 Pfam PF01544 CorA-like Mg2+ transporter protein 58 294 2.8E-34 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RA13_09955 0633366ebeb835d7fbb02051262bb0c2 317 SUPERFAMILY SSF143865 70 215 4.84E-8 T 13-10-2018 RA13_09955 0633366ebeb835d7fbb02051262bb0c2 317 Gene3D G3DSA:1.20.58.340 119 239 5.8E-6 T 13-10-2018 RA13_09955 0633366ebeb835d7fbb02051262bb0c2 317 SUPERFAMILY SSF144083 234 295 1.09E-16 T 13-10-2018 RA13_21180 40bc7bed076b51ea800aff5ecdcea27a 85 Pfam PF04226 Transglycosylase associated protein 34 79 5.0E-10 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 RA13_05655 1343e13bd1e03d23a66fa0c57ddb06f1 101 Pfam PF02583 Metal-sensitive transcriptional repressor 17 97 6.1E-33 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RA13_05655 1343e13bd1e03d23a66fa0c57ddb06f1 101 Gene3D G3DSA:1.20.58.1000 1 100 1.6E-39 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily RA13_19410 8fe2f1cde83bd8030ba05253a7398238 287 Gene3D G3DSA:1.10.1670.40 235 284 1.5E-49 T 13-10-2018 RA13_19410 8fe2f1cde83bd8030ba05253a7398238 287 SMART SM00478 127 286 1.2E-31 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RA13_19410 8fe2f1cde83bd8030ba05253a7398238 287 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 124 273 2.4E-20 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RA13_19410 8fe2f1cde83bd8030ba05253a7398238 287 SUPERFAMILY SSF48150 107 285 2.2E-38 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RA13_19410 8fe2f1cde83bd8030ba05253a7398238 287 Gene3D G3DSA:1.10.340.30 115 234 1.5E-49 T 13-10-2018 RA13_12635 611a4cd6842372a938dc93f2ae0aed25 198 Pfam PF09335 SNARE associated Golgi protein 29 155 2.1E-27 T 13-10-2018 IPR032816 SNARE associated Golgi protein RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 PRINTS PR00819 CbxX/CfqX superfamily signature 54 68 1.9E-35 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 PRINTS PR00819 CbxX/CfqX superfamily signature 146 165 1.9E-35 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 PRINTS PR00819 CbxX/CfqX superfamily signature 176 188 1.9E-35 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 PRINTS PR00819 CbxX/CfqX superfamily signature 94 109 1.9E-35 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 PRINTS PR00819 CbxX/CfqX superfamily signature 132 146 1.9E-35 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 SUPERFAMILY SSF52540 41 184 4.92E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 Gene3D G3DSA:3.40.50.300 26 192 2.6E-43 T 13-10-2018 RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 SMART SM00382 91 210 1.4E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_14460 ce4775a291ea9962e31a68a065bd03bb 213 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 95 185 3.8E-14 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_00385 f815ad5c2345b612b0ad53a5425d16e3 177 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 45 67 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RA13_00385 f815ad5c2345b612b0ad53a5425d16e3 177 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 9 161 7.6E-58 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 RA13_00385 f815ad5c2345b612b0ad53a5425d16e3 177 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 67 2.8E-13 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RA13_00385 f815ad5c2345b612b0ad53a5425d16e3 177 Gene3D G3DSA:1.20.120.1760 1 164 2.4E-11 T 13-10-2018 RA13_06295 e3e40567e57c63df214d97fe0f316a8d 283 Gene3D G3DSA:3.20.20.410 1 282 5.0E-96 T 13-10-2018 IPR036520 UPF0759 superfamily RA13_06295 e3e40567e57c63df214d97fe0f316a8d 283 SUPERFAMILY SSF117396 2 269 1.01E-84 T 13-10-2018 IPR036520 UPF0759 superfamily RA13_06295 e3e40567e57c63df214d97fe0f316a8d 283 Pfam PF01904 Protein of unknown function DUF72 16 264 6.1E-60 T 13-10-2018 IPR002763 Protein of unknown function DUF72 RA13_00960 db79bd5df674f1cb28ec63f6b39adbfc 59 Gene3D G3DSA:3.30.1390.20 1 58 2.5E-27 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RA13_00960 db79bd5df674f1cb28ec63f6b39adbfc 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 7.7E-26 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00960 db79bd5df674f1cb28ec63f6b39adbfc 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 22 54 - T 13-10-2018 IPR018038 Ribosomal protein L30, conserved site RA13_00960 db79bd5df674f1cb28ec63f6b39adbfc 59 SUPERFAMILY SSF55129 1 58 4.84E-21 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RA13_00960 db79bd5df674f1cb28ec63f6b39adbfc 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 54 3.0E-20 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RA13_00960 db79bd5df674f1cb28ec63f6b39adbfc 59 PIRSF PIRSF002211 1 59 2.9E-28 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00960 db79bd5df674f1cb28ec63f6b39adbfc 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.58 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09530 7f65546c062e61d4ae41c5c9c500efd4 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.657 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_09530 7f65546c062e61d4ae41c5c9c500efd4 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 14 88 9.0E-32 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_09530 7f65546c062e61d4ae41c5c9c500efd4 88 Pfam PF01649 Ribosomal protein S20 2 84 2.6E-26 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_09530 7f65546c062e61d4ae41c5c9c500efd4 88 SUPERFAMILY SSF46992 3 86 2.88E-27 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_09530 7f65546c062e61d4ae41c5c9c500efd4 88 Gene3D G3DSA:1.20.58.110 1 87 9.8E-29 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_09530 7f65546c062e61d4ae41c5c9c500efd4 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.8E-32 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_04375 749a28a61d255d73a06de44590ae19dd 256 SUPERFAMILY SSF89550 1 203 2.75E-15 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RA13_04375 749a28a61d255d73a06de44590ae19dd 256 PIRSF PIRSF016557 1 254 6.5E-104 T 13-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 RA13_04375 749a28a61d255d73a06de44590ae19dd 256 Gene3D G3DSA:3.20.20.140 1 256 2.9E-101 T 13-10-2018 RA13_03590 bb883d8f5e4d800949d1f572030ef432 288 Gene3D G3DSA:3.40.630.30 34 280 6.2E-41 T 13-10-2018 RA13_03590 bb883d8f5e4d800949d1f572030ef432 288 SUPERFAMILY SSF55729 133 280 1.03E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_03590 bb883d8f5e4d800949d1f572030ef432 288 Pfam PF00583 Acetyltransferase (GNAT) family 165 270 1.2E-15 T 13-10-2018 IPR000182 GNAT domain RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 2.0E-32 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 37.342 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 163 1.3E-73 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 SUPERFAMILY SSF54768 9 76 5.55E-25 T 13-10-2018 RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 Gene3D G3DSA:3.30.230.10 74 166 4.1E-37 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 Gene3D G3DSA:3.30.160.20 1 73 2.8E-35 T 13-10-2018 RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 SUPERFAMILY SSF54211 80 159 6.57E-26 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_00965 f62a07ae2e006c8a2e283e271f789e4e 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 3.6E-30 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RA13_07100 595e7fa17c4514b4594f0a9001886d35 192 Gene3D G3DSA:1.10.1760.20 4 190 1.1E-58 T 13-10-2018 RA13_07100 595e7fa17c4514b4594f0a9001886d35 192 TIGRFAM TIGR02357 ECF_ThiT_YuaJ: energy-coupled thiamine transporter ThiT 8 188 3.0E-66 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 RA13_07100 595e7fa17c4514b4594f0a9001886d35 192 Pfam PF09515 Thiamine transporter protein (Thia_YuaJ) 10 187 3.0E-61 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 SUPERFAMILY SSF55821 2 199 2.75E-83 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 6 196 1.7E-83 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 Gene3D G3DSA:3.40.50.10990 203 375 1.5E-75 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 206 396 1.5E-78 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 Pfam PF00925 GTP cyclohydrolase II 206 372 2.2E-75 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 1 197 4.3E-85 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 PIRSF PIRSF001259 1 398 2.1E-189 T 13-10-2018 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 1 394 56.896 T 13-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 201 37.906 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 Gene3D G3DSA:3.90.870.10 1 202 7.0E-87 T 13-10-2018 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 202 398 42.375 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RA13_10785 b7de13f7658c36efb0f16b7bddede363 398 SUPERFAMILY SSF142695 203 375 1.12E-71 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RA13_16890 9669148b0f3de8f74d136f4d2634eb29 109 SUPERFAMILY SSF159865 1 59 5.62E-22 T 13-10-2018 IPR035950 XkdW-like superfamily RA13_16890 9669148b0f3de8f74d136f4d2634eb29 109 Gene3D G3DSA:3.30.56.60 1 60 7.1E-27 T 13-10-2018 IPR035950 XkdW-like superfamily RA13_16890 9669148b0f3de8f74d136f4d2634eb29 109 Pfam PF09636 XkdW protein 1 106 5.0E-49 T 13-10-2018 IPR019094 Bacteriophage SP-beta, YorD RA13_03420 305aec5db9159683f2c35cdb7abc2b98 127 Pfam PF04138 GtrA-like protein 2 119 4.2E-28 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RA13_15515 bb1cd20b52d43344a435ef64def2d0c2 264 SMART SM00382 27 220 5.7E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_15515 bb1cd20b52d43344a435ef64def2d0c2 264 Pfam PF00005 ABC transporter 18 169 4.7E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_15515 bb1cd20b52d43344a435ef64def2d0c2 264 SUPERFAMILY SSF52540 2 233 1.52E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15515 bb1cd20b52d43344a435ef64def2d0c2 264 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_15515 bb1cd20b52d43344a435ef64def2d0c2 264 Gene3D G3DSA:3.40.50.300 1 250 3.3E-59 T 13-10-2018 RA13_17015 dba3b4827785627f6ae676528f6117e8 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 65 160 1.9E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_17015 dba3b4827785627f6ae676528f6117e8 169 SUPERFAMILY SSF88659 91 164 1.79E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_17015 dba3b4827785627f6ae676528f6117e8 169 Gene3D G3DSA:1.10.10.10 89 166 2.2E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_17015 dba3b4827785627f6ae676528f6117e8 169 Pfam PF08281 Sigma-70, region 4 104 157 8.9E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_16355 63165c839c0bbea850d7f9466af091ce 271 Pfam PF01618 MotA/TolQ/ExbB proton channel family 102 219 1.6E-27 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RA13_16355 63165c839c0bbea850d7f9466af091ce 271 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 186 203 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site RA13_16410 7bc435a71d2decfb13f12a1e17cc9d56 393 Gene3D G3DSA:3.40.640.10 44 285 2.5E-115 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_16410 7bc435a71d2decfb13f12a1e17cc9d56 393 Pfam PF00155 Aminotransferase class I and II 33 383 6.7E-67 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_16410 7bc435a71d2decfb13f12a1e17cc9d56 393 SUPERFAMILY SSF53383 6 386 5.09E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_16410 7bc435a71d2decfb13f12a1e17cc9d56 393 Gene3D G3DSA:3.90.1150.10 24 383 2.5E-115 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 PRINTS PR00773 GrpE protein signature 85 100 4.6E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 PRINTS PR00773 GrpE protein signature 139 154 4.6E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 PRINTS PR00773 GrpE protein signature 166 185 4.6E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 PRINTS PR00773 GrpE protein signature 57 73 4.6E-31 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 Hamap MF_01151 Protein GrpE [grpE]. 2 187 21.907 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 ProSitePatterns PS01071 grpE protein signature. 142 185 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 Gene3D G3DSA:3.90.20.20 1 130 8.7E-23 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 Pfam PF01025 GrpE 24 187 1.7E-52 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 SUPERFAMILY SSF58014 37 131 1.96E-25 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 Gene3D G3DSA:2.30.22.10 131 187 6.2E-26 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RA13_09565 2a1d67b841cf5be7a312ce6300c9ece9 187 SUPERFAMILY SSF51064 132 187 1.18E-19 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RA13_19105 4cea730fb0baae3923b3b829e60851c6 429 Gene3D G3DSA:3.40.640.10 71 319 1.0E-169 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_19105 4cea730fb0baae3923b3b829e60851c6 429 Gene3D G3DSA:3.90.1150.10 8 422 1.0E-169 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_19105 4cea730fb0baae3923b3b829e60851c6 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_19105 4cea730fb0baae3923b3b829e60851c6 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 4 427 93.721 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RA13_19105 4cea730fb0baae3923b3b829e60851c6 429 SUPERFAMILY SSF53383 3 427 1.49E-123 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_19105 4cea730fb0baae3923b3b829e60851c6 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 426 4.7E-171 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RA13_19105 4cea730fb0baae3923b3b829e60851c6 429 Pfam PF00202 Aminotransferase class-III 35 409 1.4E-70 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_07375 2e960baa36d8582a92dd78b5083ef2fc 189 SMART SM00947 26 182 3.3E-35 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RA13_07375 2e960baa36d8582a92dd78b5083ef2fc 189 Pfam PF00484 Carbonic anhydrase 34 178 6.0E-18 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RA13_07375 2e960baa36d8582a92dd78b5083ef2fc 189 SUPERFAMILY SSF53056 1 181 1.16E-42 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RA13_07375 2e960baa36d8582a92dd78b5083ef2fc 189 Gene3D G3DSA:3.40.1050.10 2 183 2.0E-45 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RA13_12485 464717f0b9148d23b1be0464830376d5 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12485 464717f0b9148d23b1be0464830376d5 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12485 464717f0b9148d23b1be0464830376d5 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12485 464717f0b9148d23b1be0464830376d5 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 5.4E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_12485 464717f0b9148d23b1be0464830376d5 289 Gene3D G3DSA:1.10.10.10 1 89 1.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_12485 464717f0b9148d23b1be0464830376d5 289 SUPERFAMILY SSF46785 4 110 7.07E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_12485 464717f0b9148d23b1be0464830376d5 289 Gene3D G3DSA:3.40.190.290 90 285 1.9E-36 T 13-10-2018 RA13_12485 464717f0b9148d23b1be0464830376d5 289 SUPERFAMILY SSF53850 88 284 2.95E-36 T 13-10-2018 RA13_12485 464717f0b9148d23b1be0464830376d5 289 Pfam PF03466 LysR substrate binding domain 88 283 8.9E-41 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_01810 6b28e8f76ddbd446b8e61ad3efd9b3f5 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 26 9.0E-8 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01810 6b28e8f76ddbd446b8e61ad3efd9b3f5 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.77 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01810 6b28e8f76ddbd446b8e61ad3efd9b3f5 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01810 6b28e8f76ddbd446b8e61ad3efd9b3f5 44 Pfam PF00468 Ribosomal protein L34 1 44 5.7E-23 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01810 6b28e8f76ddbd446b8e61ad3efd9b3f5 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.1E-20 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_10385 c10c8287e228372246e0cdc20ff8b0f3 277 Hamap MF_01811 Membrane protein insertase YidC [yidC]. 3 262 27.788 T 13-10-2018 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes GO:0016021|GO:0032977 RA13_10385 c10c8287e228372246e0cdc20ff8b0f3 277 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 63 258 1.1E-50 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_10385 c10c8287e228372246e0cdc20ff8b0f3 277 Pfam PF02096 60Kd inner membrane protein 63 258 1.5E-47 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RA13_09595 6353c6f1ec06a6d1dd8ffc9c7accd43d 308 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 307 1.0E-127 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 RA13_09595 6353c6f1ec06a6d1dd8ffc9c7accd43d 308 Pfam PF02690 Na+/Pi-cotransporter 162 253 3.4E-17 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 RA13_09595 6353c6f1ec06a6d1dd8ffc9c7accd43d 308 Pfam PF02690 Na+/Pi-cotransporter 13 145 5.5E-33 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 432 2.3E-179 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 SUPERFAMILY SSF52540 5 167 1.3E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 Hamap MF_00195 GTPase Der [der]. 3 436 40.945 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 353 433 3.0E-35 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 PIRSF PIRSF006485 2 436 1.5E-174 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 Gene3D G3DSA:3.30.300.20 353 436 8.8E-37 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 Gene3D G3DSA:3.40.50.300 1 163 1.6E-46 T 13-10-2018 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 Pfam PF01926 50S ribosome-binding GTPase 178 295 3.5E-25 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 Pfam PF01926 50S ribosome-binding GTPase 6 120 5.7E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 Gene3D G3DSA:3.40.50.300 169 352 4.8E-55 T 13-10-2018 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 179 337 2.0E-24 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 125 1.9E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_11005 4c3d9d5a850afda5832c917b482f35af 436 SUPERFAMILY SSF52540 138 434 7.02E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19385 ea5f883c7a6511cc2137066b391a8c67 329 Pfam PF00676 Dehydrogenase E1 component 22 315 2.3E-92 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RA13_19385 ea5f883c7a6511cc2137066b391a8c67 329 SUPERFAMILY SSF52518 9 328 4.65E-99 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_19385 ea5f883c7a6511cc2137066b391a8c67 329 Gene3D G3DSA:3.40.50.970 2 329 6.7E-122 T 13-10-2018 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 SUPERFAMILY SSF51735 2 194 8.05E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_04740 4563ea45195262307dbb26b3049e8c72 461 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 199 291 3.6E-40 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 PIRSF PIRSF500134 2 434 6.8E-181 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 Gene3D G3DSA:3.40.50.720 1 198 1.6E-75 T 13-10-2018 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 Gene3D G3DSA:1.20.5.100 199 229 1.3E-19 T 13-10-2018 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 SUPERFAMILY SSF52413 300 426 1.03E-32 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 2 412 1.2E-139 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 184 1.3E-70 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 Gene3D G3DSA:3.40.50.720 230 442 3.1E-73 T 13-10-2018 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 315 414 1.2E-26 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 SUPERFAMILY SSF48179 199 296 2.99E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 PIRSF PIRSF000124 2 431 3.4E-141 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RA13_04740 4563ea45195262307dbb26b3049e8c72 461 SMART SM00984 314 416 9.0E-39 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 Gene3D G3DSA:1.10.3810.10 65 255 1.3E-194 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 Pfam PF00912 Transglycosylase 56 229 1.1E-65 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 Gene3D G3DSA:3.40.710.10 295 607 1.3E-194 T 13-10-2018 RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 SUPERFAMILY SSF56601 211 611 1.48E-103 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 SUPERFAMILY SSF53955 44 253 7.59E-75 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 Pfam PF00905 Penicillin binding protein transpeptidase domain 321 593 1.5E-47 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 598 1.1E-181 T 13-10-2018 RA13_18245 3ee50d9f39d01fbe633df56359390b5a 713 Gene3D G3DSA:3.90.1310.20 50 503 1.3E-194 T 13-10-2018 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 Gene3D G3DSA:2.40.30.30 190 316 3.8E-42 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 21 312 1.7E-117 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 SUPERFAMILY SSF82114 175 314 2.62E-46 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 21 88 3.7E-11 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 SUPERFAMILY SSF52374 19 181 5.07E-28 T 13-10-2018 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 PIRSF PIRSF004491 3 316 5.3E-110 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 SMART SM00904 185 312 1.3E-59 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 Gene3D G3DSA:3.40.50.620 1 189 4.4E-53 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 Pfam PF01687 Riboflavin kinase 186 310 1.7E-36 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RA13_14835 08d3a673979bfc1686ebaecb663e577d 316 Pfam PF06574 FAD synthetase 14 168 3.2E-49 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 ProSitePatterns PS00902 Glutamate 5-kinase signature. 210 227 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 Gene3D G3DSA:3.40.1160.10 3 263 1.1E-85 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_12460 30b43bf473603a05c838b2f89297bf87 374 SUPERFAMILY SSF53633 8 258 1.17E-67 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_12460 30b43bf473603a05c838b2f89297bf87 374 Hamap MF_00456 Glutamate 5-kinase [proB]. 8 262 37.394 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 SMART SM00359 281 358 7.9E-6 T 13-10-2018 IPR002478 PUA domain GO:0003723 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 TIGRFAM TIGR01027 proB: glutamate 5-kinase 8 354 1.2E-117 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 Gene3D G3DSA:2.30.130.10 270 369 1.1E-13 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 PIRSF PIRSF000729 3 370 6.4E-136 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 Pfam PF00696 Amino acid kinase family 8 234 1.0E-44 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 PRINTS PR00474 Glutamate 5-kinase family signature 79 107 3.3E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 PRINTS PR00474 Glutamate 5-kinase family signature 119 140 3.3E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 PRINTS PR00474 Glutamate 5-kinase family signature 45 59 3.3E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 PRINTS PR00474 Glutamate 5-kinase family signature 151 178 3.3E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 PRINTS PR00474 Glutamate 5-kinase family signature 212 232 3.3E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 Pfam PF01472 PUA domain 281 345 5.7E-9 T 13-10-2018 IPR002478 PUA domain GO:0003723 RA13_12460 30b43bf473603a05c838b2f89297bf87 374 SUPERFAMILY SSF88697 281 341 1.16E-9 T 13-10-2018 IPR015947 PUA-like superfamily RA13_19195 b824c6a2009c45248bf934b1752b8f20 108 Pfam PF08838 Protein of unknown function (DUF1811) 3 101 1.5E-42 T 13-10-2018 IPR014938 Protein of unknown function DUF1811 RA13_19195 b824c6a2009c45248bf934b1752b8f20 108 Gene3D G3DSA:2.30.30.340 51 104 7.0E-25 T 13-10-2018 RA13_19195 b824c6a2009c45248bf934b1752b8f20 108 SUPERFAMILY SSF101697 1 103 1.83E-47 T 13-10-2018 IPR036289 Hypothetical protein YfhH RA13_19195 b824c6a2009c45248bf934b1752b8f20 108 Gene3D G3DSA:1.10.287.880 1 50 9.4E-27 T 13-10-2018 RA13_09760 74aabbf6d907272f47737abe86f210d7 297 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 285 42.275 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 RA13_09760 74aabbf6d907272f47737abe86f210d7 297 Gene3D G3DSA:3.20.20.150 1 297 1.5E-101 T 13-10-2018 RA13_09760 74aabbf6d907272f47737abe86f210d7 297 Pfam PF01261 Xylose isomerase-like TIM barrel 22 237 1.2E-37 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RA13_09760 74aabbf6d907272f47737abe86f210d7 297 SUPERFAMILY SSF51658 2 295 3.54E-102 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_09760 74aabbf6d907272f47737abe86f210d7 297 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 282 8.4E-105 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 RA13_09760 74aabbf6d907272f47737abe86f210d7 297 SMART SM00518 3 285 4.0E-134 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 RA13_09760 74aabbf6d907272f47737abe86f210d7 297 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RA13_09760 74aabbf6d907272f47737abe86f210d7 297 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 213 229 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RA13_09760 74aabbf6d907272f47737abe86f210d7 297 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 RA13_04635 feeb66b2bb4dde86b6946e694ac436d5 368 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 7 363 1.0E-73 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 RA13_04635 feeb66b2bb4dde86b6946e694ac436d5 368 Pfam PF03845 Spore germination protein 7 329 4.1E-97 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 RA13_04635 feeb66b2bb4dde86b6946e694ac436d5 368 PIRSF PIRSF006060 1 293 1.4E-9 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_04635 feeb66b2bb4dde86b6946e694ac436d5 368 PIRSF PIRSF006060 299 367 12.0 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_04635 feeb66b2bb4dde86b6946e694ac436d5 368 Gene3D G3DSA:1.20.1740.10 1 364 8.8E-8 T 13-10-2018 RA13_12395 9877163c697a60d2d773ec0508697580 492 Gene3D G3DSA:3.30.420.40 243 485 1.5E-28 T 13-10-2018 RA13_12395 9877163c697a60d2d773ec0508697580 492 Gene3D G3DSA:3.30.420.40 4 242 1.7E-50 T 13-10-2018 RA13_12395 9877163c697a60d2d773ec0508697580 492 SUPERFAMILY SSF53067 7 245 1.5E-45 T 13-10-2018 RA13_12395 9877163c697a60d2d773ec0508697580 492 PIRSF PIRSF000538 4 486 3.9E-65 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_12395 9877163c697a60d2d773ec0508697580 492 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 357 441 3.5E-12 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RA13_12395 9877163c697a60d2d773ec0508697580 492 SUPERFAMILY SSF53067 251 477 2.89E-24 T 13-10-2018 RA13_12395 9877163c697a60d2d773ec0508697580 492 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 244 1.2E-39 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 Gene3D G3DSA:1.10.1040.10 204 373 5.7E-56 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 SUPERFAMILY SSF48179 201 367 1.43E-40 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 362 8.3E-53 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 Gene3D G3DSA:3.40.50.720 2 202 8.8E-75 T 13-10-2018 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 149 161 - T 13-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 2 122 8.7E-26 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 SUPERFAMILY SSF51735 3 200 7.17E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 371 40.947 T 13-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 1.3E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 PRINTS PR00084 Mannitol dehydrogenase signature 113 126 1.3E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 PRINTS PR00084 Mannitol dehydrogenase signature 149 162 1.3E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_21395 4ae4ac60d2cc74be42363a2b893a7906 373 PRINTS PR00084 Mannitol dehydrogenase signature 167 182 1.3E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 SUPERFAMILY SSF54211 3 202 9.11E-60 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 Gene3D G3DSA:3.30.230.10 21 201 6.1E-134 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 Hamap MF_00246 Galactokinase [galK]. 24 386 47.004 T 13-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 ProSitePatterns PS00106 Galactokinase signature. 26 37 - T 13-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 Gene3D G3DSA:3.30.70.890 202 360 6.1E-134 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 Pfam PF08544 GHMP kinases C terminal 288 366 6.3E-12 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 Pfam PF10509 Galactokinase galactose-binding signature 8 56 5.0E-21 T 13-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 TIGRFAM TIGR00131 gal_kin: galactokinase 3 386 5.2E-150 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PIRSF PIRSF000530 1 388 3.6E-119 T 13-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 Pfam PF00288 GHMP kinases N terminal domain 114 181 9.6E-14 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00473 Galactokinase signature 26 44 6.8E-27 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00473 Galactokinase signature 91 102 6.8E-27 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00473 Galactokinase signature 112 130 6.8E-27 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00473 Galactokinase signature 269 283 6.8E-27 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 SUPERFAMILY SSF55060 205 385 4.32E-54 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00959 Mevalonate kinase family signature 333 350 3.7E-43 T 13-10-2018 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00959 Mevalonate kinase family signature 162 181 3.7E-43 T 13-10-2018 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00959 Mevalonate kinase family signature 119 141 3.7E-43 T 13-10-2018 RA13_03425 2aa34794b8c4460f763dc3e2f49ae7e3 390 PRINTS PR00959 Mevalonate kinase family signature 24 48 3.7E-43 T 13-10-2018 RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 Gene3D G3DSA:1.10.10.10 1 67 6.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 Pfam PF08279 HTH domain 12 64 4.1E-13 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 PIRSF PIRSF037847 7 179 4.8E-68 T 13-10-2018 IPR026043 Transcription repressor NadR RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 Gene3D G3DSA:3.30.1340.20 73 179 1.7E-35 T 13-10-2018 IPR035922 3H domain superfamily RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 ProDom PD469575 TRANSCRIPTION DNA-BINDING REGULATION TRANSCRIPTIONAL REGULATOR REPRESSOR FAMILY BIOTIN REGULATOR 3H 84 174 5.0E-42 T 13-10-2018 IPR004173 3H domain GO:0036094 RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 SUPERFAMILY SSF75500 77 178 4.84E-36 T 13-10-2018 IPR035922 3H domain superfamily RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 Pfam PF02829 3H domain 80 176 7.6E-34 T 13-10-2018 IPR004173 3H domain GO:0036094 RA13_08790 d9e2aa290fdb0a15c15d4b7459212593 179 SUPERFAMILY SSF46785 10 68 1.9E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05490 b5b9c0a60937aaea47713915547e9a92 309 Gene3D G3DSA:3.90.25.10 165 295 3.7E-74 T 13-10-2018 RA13_05490 b5b9c0a60937aaea47713915547e9a92 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 226 3.5E-47 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RA13_05490 b5b9c0a60937aaea47713915547e9a92 309 Gene3D G3DSA:3.40.50.720 4 226 3.7E-74 T 13-10-2018 RA13_05490 b5b9c0a60937aaea47713915547e9a92 309 PRINTS PR01713 Nucleotide sugar epimerase signature 197 212 1.4E-6 T 13-10-2018 RA13_05490 b5b9c0a60937aaea47713915547e9a92 309 PRINTS PR01713 Nucleotide sugar epimerase signature 267 284 1.4E-6 T 13-10-2018 RA13_05490 b5b9c0a60937aaea47713915547e9a92 309 PRINTS PR01713 Nucleotide sugar epimerase signature 220 235 1.4E-6 T 13-10-2018 RA13_05490 b5b9c0a60937aaea47713915547e9a92 309 SUPERFAMILY SSF51735 1 304 2.37E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19715 bc5f5899dbb4db6eb81e52b6013cc9c9 461 Gene3D G3DSA:1.20.1740.10 20 461 2.9E-130 T 13-10-2018 RA13_19715 bc5f5899dbb4db6eb81e52b6013cc9c9 461 PIRSF PIRSF006060 14 460 1.3E-87 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_19715 bc5f5899dbb4db6eb81e52b6013cc9c9 461 Pfam PF13520 Amino acid permease 26 427 5.4E-60 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_15895 fb7b230e8b6e3e406f110444f227b9b9 325 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 3.8E-40 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_15895 fb7b230e8b6e3e406f110444f227b9b9 325 Gene3D G3DSA:3.40.50.920 193 325 3.6E-47 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_15895 fb7b230e8b6e3e406f110444f227b9b9 325 SUPERFAMILY SSF52518 2 204 7.66E-66 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_15895 fb7b230e8b6e3e406f110444f227b9b9 325 Gene3D G3DSA:3.40.50.970 1 192 3.6E-80 T 13-10-2018 RA13_15895 fb7b230e8b6e3e406f110444f227b9b9 325 Pfam PF02780 Transketolase, C-terminal domain 194 314 2.7E-39 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RA13_15895 fb7b230e8b6e3e406f110444f227b9b9 325 SUPERFAMILY SSF52922 188 325 4.45E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_15895 fb7b230e8b6e3e406f110444f227b9b9 325 SMART SM00861 4 179 2.7E-62 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_03665 b1f54e815e6c3992941056e18c463707 73 Pfam PF07293 Protein of unknown function (DUF1450) 7 73 4.1E-9 T 13-10-2018 IPR009910 Protein of unknown function DUF1450 RA13_03665 b1f54e815e6c3992941056e18c463707 73 ProDom PD058324 UPF0349 LMO2392 BLI03401/BL03152 SA0800 SAR0901 LIN2491 SERP0525 GK2958 BT9727_4649 BC4937 22 72 0.002 T 13-10-2018 RA13_03665 b1f54e815e6c3992941056e18c463707 73 Hamap MF_01863 UPF0741 protein . 1 73 30.43 T 13-10-2018 IPR020880 Protein of unknown function UPF0741 RA13_12995 277d7388115474c90ff0de0f4bf1bd6e 274 Gene3D G3DSA:1.20.141.10 40 267 4.1E-78 T 13-10-2018 RA13_12995 277d7388115474c90ff0de0f4bf1bd6e 274 SUPERFAMILY SSF53955 14 274 2.81E-79 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_12995 277d7388115474c90ff0de0f4bf1bd6e 274 ProSitePatterns PS60000 Chitosanases families 46 and 80 active sites signature. 44 84 - T 13-10-2018 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RA13_12995 277d7388115474c90ff0de0f4bf1bd6e 274 PIRSF PIRSF036551 1 274 1.7E-94 T 13-10-2018 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RA13_12995 277d7388115474c90ff0de0f4bf1bd6e 274 Pfam PF01374 Glycosyl hydrolase family 46 45 261 1.6E-73 T 13-10-2018 IPR000400 Glycoside hydrolase, family 46 GO:0005576|GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RA13_12995 277d7388115474c90ff0de0f4bf1bd6e 274 Gene3D G3DSA:3.30.386.10 56 149 4.1E-78 T 13-10-2018 IPR023099 Glycoside hydrolase, family 46, N-terminal GO:0005975|GO:0016977 KEGG: 00520+3.2.1.132 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 Pfam PF00213 ATP synthase delta (OSCP) subunit 6 176 7.1E-48 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 Hamap MF_01416 ATP synthase subunit delta [atpD]. 2 178 19.67 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 138 157 - T 13-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 SUPERFAMILY SSF47928 4 105 1.06E-23 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 Gene3D G3DSA:1.10.520.20 5 98 3.0E-12 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 PRINTS PR00125 ATP synthase delta subunit signature 151 169 1.1E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.1E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 PRINTS PR00125 ATP synthase delta subunit signature 136 151 1.1E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 PRINTS PR00125 ATP synthase delta subunit signature 6 25 1.1E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.1E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04040 8f8d7419e7d58a453f5b7ce0a1f342f5 181 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 6 176 4.5E-59 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 Gene3D G3DSA:3.40.30.80 2 199 3.5E-63 T 13-10-2018 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 SUPERFAMILY SSF52833 3 101 4.75E-29 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 209 483 2.3E-45 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 307 325 6.7E-38 T 13-10-2018 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 349 367 6.7E-38 T 13-10-2018 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 459 481 6.7E-38 T 13-10-2018 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 433 449 6.7E-38 T 13-10-2018 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 211 230 6.7E-38 T 13-10-2018 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 SUPERFAMILY SSF52833 103 194 1.48E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 242 257 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 345 369 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 435 456 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 330 342 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 397 413 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 469 487 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 210 232 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 308 316 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 262 272 1.2E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 3 509 3.2E-245 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 PIRSF PIRSF000238 2 509 8.3E-261 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 Gene3D G3DSA:3.50.50.60 319 441 6.1E-109 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 Gene3D G3DSA:3.50.50.60 209 499 6.1E-109 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 Pfam PF13192 Thioredoxin domain 125 193 2.1E-9 T 13-10-2018 IPR012336 Thioredoxin-like fold RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 SUPERFAMILY SSF51905 202 505 1.47E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_02405 4b804f56170e5ebe707b21d9e6e38f6e 509 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 337 357 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RA13_03000 f77a7d94787f4ec03158e751e31bb99f 225 Pfam PF11738 Protein of unknown function (DUF3298) 180 222 1.3E-10 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 RA13_03000 f77a7d94787f4ec03158e751e31bb99f 225 Gene3D G3DSA:3.30.565.40 33 140 6.4E-23 T 13-10-2018 RA13_03000 f77a7d94787f4ec03158e751e31bb99f 225 Gene3D G3DSA:3.90.640.20 141 225 9.2E-13 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily RA13_03000 f77a7d94787f4ec03158e751e31bb99f 225 Pfam PF13739 Domain of unknown function (DUF4163) 48 129 2.3E-16 T 13-10-2018 IPR025303 Deacetylase PdaC RA13_03685 b390c3b1c72a894deeaf8074242c486c 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 6.4E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03685 b390c3b1c72a894deeaf8074242c486c 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 6.4E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03685 b390c3b1c72a894deeaf8074242c486c 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 6.4E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03685 b390c3b1c72a894deeaf8074242c486c 139 SMART SM00347 27 127 3.9E-27 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03685 b390c3b1c72a894deeaf8074242c486c 139 Pfam PF01047 MarR family 40 92 8.1E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_03685 b390c3b1c72a894deeaf8074242c486c 139 Gene3D G3DSA:1.10.10.10 3 139 6.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03685 b390c3b1c72a894deeaf8074242c486c 139 SUPERFAMILY SSF46785 9 138 1.04E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 Hamap MF_00020 Acetate kinase [ackA]. 1 395 199.264 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 Gene3D G3DSA:3.30.420.40 2 194 3.0E-77 T 13-10-2018 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 SUPERFAMILY SSF53067 157 393 3.99E-95 T 13-10-2018 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 PIRSF PIRSF000722 1 395 1.5E-155 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 SUPERFAMILY SSF53067 1 194 5.18E-73 T 13-10-2018 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 Gene3D G3DSA:3.30.420.40 195 395 1.8E-82 T 13-10-2018 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 TIGRFAM TIGR00016 ackA: acetate kinase 2 394 2.7E-185 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 Pfam PF00871 Acetokinase family 3 388 1.2E-180 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 PRINTS PR00471 Acetate kinase family signature 299 312 2.0E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 PRINTS PR00471 Acetate kinase family signature 202 223 2.0E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 PRINTS PR00471 Acetate kinase family signature 321 337 2.0E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 PRINTS PR00471 Acetate kinase family signature 375 387 2.0E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 PRINTS PR00471 Acetate kinase family signature 4 15 2.0E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_08015 e6a4dfc1671fcda5a76887bc010d052c 395 PRINTS PR00471 Acetate kinase family signature 172 185 2.0E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 Gene3D G3DSA:2.160.20.10 50 514 8.1E-110 T 13-10-2018 IPR012334 Pectin lyase fold RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 Gene3D G3DSA:4.10.80.40 662 701 5.9E-67 T 13-10-2018 RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 Pfam PF12708 Pectate lyase superfamily protein 66 280 9.6E-18 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 Pfam PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain 555 775 2.0E-75 T 13-10-2018 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 Gene3D G3DSA:2.40.300.10 609 773 5.9E-67 T 13-10-2018 RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SMART SM00710 345 384 4100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SMART SM00710 250 280 6200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SMART SM00710 310 331 2000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SMART SM00710 134 155 4600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SMART SM00710 437 459 720.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SMART SM00710 282 303 3900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SMART SM00710 227 249 4000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_19315 a4a0bcc5ecc1aafbf3af48f3fc31a33d 775 SUPERFAMILY SSF51126 65 363 5.84E-33 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_17955 0509d448e384ba0ab28c46b6caef1dbb 76 ProDom PD027559 GERMINATION SPORE GERPB PROBABLE PB SPORULATION PB-RELATED 1 56 1.0E-20 T 13-10-2018 IPR024255 Spore germination GerPB RA13_17955 0509d448e384ba0ab28c46b6caef1dbb 76 Pfam PF10803 Spore germination GerPB 1 51 7.9E-30 T 13-10-2018 IPR024255 Spore germination GerPB RA13_11245 0b1b70628024e7b14d4b24fa377eae27 161 SUPERFAMILY SSF54403 99 160 3.91E-15 T 13-10-2018 RA13_11245 0b1b70628024e7b14d4b24fa377eae27 161 SUPERFAMILY SSF54403 35 98 5.61E-15 T 13-10-2018 RA13_11245 0b1b70628024e7b14d4b24fa377eae27 161 Gene3D G3DSA:3.10.450.40 99 161 1.4E-28 T 13-10-2018 RA13_11245 0b1b70628024e7b14d4b24fa377eae27 161 Gene3D G3DSA:3.10.450.40 27 98 2.3E-30 T 13-10-2018 RA13_11245 0b1b70628024e7b14d4b24fa377eae27 161 Pfam PF03413 Peptidase propeptide and YPEB domain 100 158 3.6E-5 T 13-10-2018 IPR025711 PepSY domain RA13_06540 a59ca06a3982a0a1e35cf6e8b1b557c0 97 Gene3D G3DSA:1.10.287.1060 1 97 8.0E-28 T 13-10-2018 RA13_06540 a59ca06a3982a0a1e35cf6e8b1b557c0 97 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 5 93 1.8E-27 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RA13_06540 a59ca06a3982a0a1e35cf6e8b1b557c0 97 Pfam PF06013 Proteins of 100 residues with WXG 5 89 3.5E-26 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like RA13_06540 a59ca06a3982a0a1e35cf6e8b1b557c0 97 SUPERFAMILY SSF140453 4 96 3.4E-24 T 13-10-2018 IPR036689 ESAT-6-like superfamily RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 Gene3D G3DSA:3.90.1210.10 282 349 3.6E-24 T 13-10-2018 RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 SUPERFAMILY SSF51569 3 304 2.72E-96 T 13-10-2018 RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 Pfam PF08666 SAF domain 293 348 5.3E-12 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 SMART SM00858 292 349 8.6E-7 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 Gene3D G3DSA:3.20.20.70 3 277 1.1E-97 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 Pfam PF03102 NeuB family 37 277 1.3E-92 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 SUPERFAMILY SSF51269 288 349 8.01E-20 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 RA13_04180 fee91ec0e59eea6464c7fe77a6ea61df 349 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 16 344 1.3E-156 T 13-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 RA13_09235 1d4daf9bbdb33faa7cf062d80d15fe95 398 SUPERFAMILY SSF103473 11 388 1.31E-61 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_09235 1d4daf9bbdb33faa7cf062d80d15fe95 398 Pfam PF07690 Major Facilitator Superfamily 18 354 1.4E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_09235 1d4daf9bbdb33faa7cf062d80d15fe95 398 Gene3D G3DSA:1.20.1250.20 7 388 5.1E-54 T 13-10-2018 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 Gene3D G3DSA:3.40.50.10490 59 226 1.1E-149 T 13-10-2018 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 202 215 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 Pfam PF00342 Phosphoglucose isomerase 355 426 3.2E-5 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 Pfam PF00342 Phosphoglucose isomerase 76 295 1.8E-18 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 Gene3D G3DSA:3.40.50.10490 1 58 5.5E-20 T 13-10-2018 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 408 425 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 394 408 3.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 408 421 3.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 198 216 3.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 273 294 3.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 376 394 3.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 PRINTS PR00662 Glucose-6-phosphate isomerase signature 76 95 3.5E-29 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 Gene3D G3DSA:3.40.50.10490 227 417 1.1E-149 T 13-10-2018 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 1 435 26.7 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06815 f178b45ffa8f29a980d1659061b90377 450 SUPERFAMILY SSF53697 5 447 4.0E-142 T 13-10-2018 RA13_05930 2330e2c73d170d3058fb18a72c7aa6d6 61 Pfam PF13113 Protein of unknown function (DUF3970) 2 54 1.6E-27 T 13-10-2018 IPR025088 Protein of unknown function DUF3970 RA13_17150 aacb1889fc526eda79378c434c8d4be6 250 Pfam PF00005 ABC transporter 32 173 1.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_17150 aacb1889fc526eda79378c434c8d4be6 250 Gene3D G3DSA:3.40.50.300 9 246 5.1E-62 T 13-10-2018 RA13_17150 aacb1889fc526eda79378c434c8d4be6 250 SUPERFAMILY SSF52540 9 243 4.21E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17150 aacb1889fc526eda79378c434c8d4be6 250 SMART SM00382 41 222 5.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_17150 aacb1889fc526eda79378c434c8d4be6 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_17575 b50de5713db54db7fb10078ba8548163 305 Pfam PF00005 ABC transporter 26 178 3.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_17575 b50de5713db54db7fb10078ba8548163 305 SMART SM00382 34 228 7.5E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_17575 b50de5713db54db7fb10078ba8548163 305 Gene3D G3DSA:3.40.50.300 3 304 1.4E-93 T 13-10-2018 RA13_17575 b50de5713db54db7fb10078ba8548163 305 SUPERFAMILY SSF52540 5 250 1.69E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17575 b50de5713db54db7fb10078ba8548163 305 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_17575 b50de5713db54db7fb10078ba8548163 305 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 230 280 1.8E-8 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 ProSitePatterns PS01228 Hypothetical cof family signature 1. 3 14 - T 13-10-2018 RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 Gene3D G3DSA:3.40.50.1000 2 278 2.1E-106 T 13-10-2018 IPR023214 HAD superfamily RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 Gene3D G3DSA:3.30.1240.10 81 210 2.1E-106 T 13-10-2018 RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 3 281 6.8E-65 T 13-10-2018 IPR000150 Cof family GO:0016787 RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 ProSitePatterns PS01229 Hypothetical cof family signature 2. 235 257 - T 13-10-2018 RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 3 254 7.6E-30 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 Pfam PF08282 haloacid dehalogenase-like hydrolase 4 281 8.2E-68 T 13-10-2018 RA13_04345 6d6c4036de1f8daeccc236d21778a6da 285 SUPERFAMILY SSF56784 1 285 2.41E-69 T 13-10-2018 IPR036412 HAD-like superfamily RA13_10215 6119751a3f0315d6f24dad5c7c098841 426 TIGRFAM TIGR02860 spore_IV_B: stage IV sporulation protein B 3 417 9.3E-180 T 13-10-2018 IPR014219 Peptidase S55, sporulation stage IV, protein B RA13_10215 6119751a3f0315d6f24dad5c7c098841 426 SUPERFAMILY SSF50494 351 411 7.6E-7 T 13-10-2018 IPR009003 Peptidase S1, PA clan RA13_10215 6119751a3f0315d6f24dad5c7c098841 426 SMART SM00228 111 187 1.0E-5 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_10215 6119751a3f0315d6f24dad5c7c098841 426 SUPERFAMILY SSF50156 136 197 2.23E-10 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_10215 6119751a3f0315d6f24dad5c7c098841 426 Gene3D G3DSA:2.30.42.10 134 213 7.5E-16 T 13-10-2018 RA13_10215 6119751a3f0315d6f24dad5c7c098841 426 Pfam PF05580 SpoIVB peptidase S55 204 412 8.1E-88 T 13-10-2018 IPR008763 Peptidase S55, SpoIVB RA13_10215 6119751a3f0315d6f24dad5c7c098841 426 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 108 183 1.6E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_02615 4a3fb8c530154871334e7fd8120242d3 323 SUPERFAMILY SSF53807 41 308 2.59E-51 T 13-10-2018 RA13_02615 4a3fb8c530154871334e7fd8120242d3 323 Gene3D G3DSA:3.40.50.1980 40 152 8.1E-23 T 13-10-2018 RA13_02615 4a3fb8c530154871334e7fd8120242d3 323 Pfam PF01497 Periplasmic binding protein 74 291 2.3E-28 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_02615 4a3fb8c530154871334e7fd8120242d3 323 Gene3D G3DSA:3.40.50.1980 153 319 3.1E-54 T 13-10-2018 RA13_11015 cd42148e41039d29f36f004be0d1e6b1 67 ProDom PD054986 YPHE TRANSMEMBRANE MEMBRANE PRECURSOR BH1643 SIGNAL 1 67 5.0E-24 T 13-10-2018 IPR020076 Protein of unknown function DUF2768 RA13_11015 cd42148e41039d29f36f004be0d1e6b1 67 Pfam PF10966 Protein of unknown function (DUF2768) 7 64 9.3E-25 T 13-10-2018 IPR020076 Protein of unknown function DUF2768 RA13_03905 62ab5a2e11f230665427847ead426fdb 212 SUPERFAMILY SSF51569 1 212 2.3E-76 T 13-10-2018 RA13_03905 62ab5a2e11f230665427847ead426fdb 212 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 212 1.9E-105 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RA13_03905 62ab5a2e11f230665427847ead426fdb 212 ProSitePatterns PS00958 Transaldolase active site. 81 98 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RA13_03905 62ab5a2e11f230665427847ead426fdb 212 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RA13_03905 62ab5a2e11f230665427847ead426fdb 212 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 203 1.9E-57 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RA13_03905 62ab5a2e11f230665427847ead426fdb 212 Gene3D G3DSA:3.20.20.70 1 212 5.2E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_03905 62ab5a2e11f230665427847ead426fdb 212 Hamap MF_00494 Probable transaldolase [tal]. 1 211 45.855 T 13-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 Gene3D G3DSA:1.10.287.130 189 311 1.7E-17 T 13-10-2018 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 366 469 2.6E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 Gene3D G3DSA:3.30.565.10 323 469 1.6E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 313 1.4E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 9.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 469 9.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 451 9.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 427 9.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 SMART SM00388 249 317 8.2E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 SUPERFAMILY SSF55874 326 469 5.37E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 SMART SM00387 363 469 8.4E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_01975 159ecad64d010a625b7ccdaec45efa9c 469 SUPERFAMILY SSF47384 233 318 7.65E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 105 3.1E-20 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 Gene3D G3DSA:1.10.3730.10 170 277 1.4E-36 T 13-10-2018 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 228 250 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 10 271 3.9E-85 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 Gene3D G3DSA:3.40.50.720 4 169 3.6E-42 T 13-10-2018 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 SUPERFAMILY SSF51735 8 165 1.2E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 SUPERFAMILY SSF48179 167 275 1.87E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 PIRSF PIRSF000193 7 275 3.4E-73 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 8 272 24.717 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_12455 a59db9327b1eb66a522b312c9cdc0ba7 283 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 168 271 5.8E-33 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 459 2.1E-252 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 Pfam PF00206 Lyase 11 340 1.1E-120 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 460 89.622 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 Gene3D G3DSA:1.10.40.30 406 462 2.4E-28 T 13-10-2018 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 Pfam PF10415 Fumarase C C-terminus 406 458 4.0E-26 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 Gene3D G3DSA:1.10.275.10 4 136 6.5E-56 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 2.2E-33 T 13-10-2018 IPR000362 Fumarate lyase family RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 PRINTS PR00149 Fumarate lyase superfamily signature 132 150 2.2E-33 T 13-10-2018 IPR000362 Fumarate lyase family RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 2.2E-33 T 13-10-2018 IPR000362 Fumarate lyase family RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 2.2E-33 T 13-10-2018 IPR000362 Fumarate lyase family RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 SUPERFAMILY SSF48557 3 458 6.13E-157 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 PRINTS PR00145 Argininosuccinate lyase family signature 173 193 1.3E-5 T 13-10-2018 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 PRINTS PR00145 Argininosuccinate lyase family signature 315 331 1.3E-5 T 13-10-2018 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RA13_05935 392eef4cade5aeab404fc7a555ed46ea 462 Gene3D G3DSA:1.20.200.10 137 405 6.2E-115 T 13-10-2018 RA13_04440 3b5df2b638a924e600dccceb3ae37342 181 Pfam PF03358 NADPH-dependent FMN reductase 1 124 1.2E-20 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RA13_04440 3b5df2b638a924e600dccceb3ae37342 181 SUPERFAMILY SSF52218 1 178 7.61E-36 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_04440 3b5df2b638a924e600dccceb3ae37342 181 Gene3D G3DSA:3.40.50.360 1 181 8.8E-51 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_06235 2ca232db36c4e6129a77799d44b1233b 242 SUPERFAMILY SSF55469 56 236 8.64E-13 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_06235 2ca232db36c4e6129a77799d44b1233b 242 Gene3D G3DSA:3.40.109.10 14 236 8.2E-26 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_06235 2ca232db36c4e6129a77799d44b1233b 242 Pfam PF00881 Nitroreductase family 62 234 6.3E-12 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_15940 1df0df3bd02b54634831b1f6fb5b25ea 221 Pfam PF02254 TrkA-N domain 5 120 1.1E-29 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RA13_15940 1df0df3bd02b54634831b1f6fb5b25ea 221 Gene3D G3DSA:3.40.50.720 1 136 3.5E-38 T 13-10-2018 RA13_15940 1df0df3bd02b54634831b1f6fb5b25ea 221 Gene3D G3DSA:3.30.70.1450 137 217 1.4E-28 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_15940 1df0df3bd02b54634831b1f6fb5b25ea 221 Pfam PF02080 TrkA-C domain 150 216 1.6E-16 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RA13_15940 1df0df3bd02b54634831b1f6fb5b25ea 221 SUPERFAMILY SSF116726 131 215 4.05E-22 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_15940 1df0df3bd02b54634831b1f6fb5b25ea 221 SUPERFAMILY SSF51735 4 134 6.22E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08995 9358034285728aa2d9b70556b38cd929 521 Gene3D G3DSA:3.40.630.40 345 521 6.3E-52 T 13-10-2018 RA13_08995 9358034285728aa2d9b70556b38cd929 521 Gene3D G3DSA:2.30.30.40 23 92 2.6E-17 T 13-10-2018 RA13_08995 9358034285728aa2d9b70556b38cd929 521 Gene3D G3DSA:2.30.30.40 171 240 8.6E-19 T 13-10-2018 RA13_08995 9358034285728aa2d9b70556b38cd929 521 SUPERFAMILY SSF53187 347 520 6.28E-51 T 13-10-2018 RA13_08995 9358034285728aa2d9b70556b38cd929 521 SMART SM00646 408 517 6.5E-35 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_08995 9358034285728aa2d9b70556b38cd929 521 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 349 517 2.7E-44 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_08995 9358034285728aa2d9b70556b38cd929 521 PIRSF PIRSF037846 168 521 2.6E-149 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 RA13_08995 9358034285728aa2d9b70556b38cd929 521 PIRSF PIRSF037846 1 213 6.8E-71 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 RA13_08995 9358034285728aa2d9b70556b38cd929 521 Gene3D G3DSA:2.30.30.40 102 164 5.7E-18 T 13-10-2018 RA13_08995 9358034285728aa2d9b70556b38cd929 521 SMART SM00287 260 322 6.2E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 SMART SM00287 178 240 2.7E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 SMART SM00287 29 91 1.1E-20 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 SMART SM00287 102 164 9.1E-17 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 Pfam PF08239 Bacterial SH3 domain 110 160 3.3E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 Pfam PF08239 Bacterial SH3 domain 40 88 2.2E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 Pfam PF08239 Bacterial SH3 domain 268 319 1.9E-8 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 Pfam PF08239 Bacterial SH3 domain 186 236 6.2E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_08995 9358034285728aa2d9b70556b38cd929 521 Gene3D G3DSA:2.30.30.40 258 317 7.9E-13 T 13-10-2018 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 PRINTS PR00412 Epoxide hydrolase signature 53 68 4.2E-23 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 PRINTS PR00412 Epoxide hydrolase signature 99 112 4.2E-23 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 PRINTS PR00412 Epoxide hydrolase signature 260 282 4.2E-23 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 PRINTS PR00412 Epoxide hydrolase signature 33 51 4.2E-23 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 Pfam PF00561 alpha/beta hydrolase fold 27 272 5.0E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 1.0E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 229 243 1.0E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 1.0E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 Gene3D G3DSA:3.40.50.1820 4 284 1.8E-82 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_19165 413a3a250a86fb2dd41e2bef61a47140 288 SUPERFAMILY SSF53474 4 284 5.22E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_08305 deb8cbe6d7d2c3effd327a1f3292b53e 468 SUPERFAMILY SSF75304 10 463 1.11E-151 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_08305 deb8cbe6d7d2c3effd327a1f3292b53e 468 ProSitePatterns PS00571 Amidases signature. 157 188 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RA13_08305 deb8cbe6d7d2c3effd327a1f3292b53e 468 Gene3D G3DSA:3.90.1300.10 8 465 8.2E-159 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_08305 deb8cbe6d7d2c3effd327a1f3292b53e 468 Pfam PF01425 Amidase 30 446 3.9E-129 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_07255 cd5aa468de333d49871cdb8f594befdd 353 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 44 349 4.4E-105 T 13-10-2018 IPR014255 Spore coat protein CotS RA13_07255 cd5aa468de333d49871cdb8f594befdd 353 Gene3D G3DSA:3.90.1200.10 121 353 4.9E-83 T 13-10-2018 RA13_07255 cd5aa468de333d49871cdb8f594befdd 353 Gene3D G3DSA:3.30.200.20 8 120 7.2E-37 T 13-10-2018 RA13_07255 cd5aa468de333d49871cdb8f594befdd 353 SUPERFAMILY SSF56112 29 333 1.51E-44 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_07255 cd5aa468de333d49871cdb8f594befdd 353 Pfam PF01636 Phosphotransferase enzyme family 44 270 8.7E-16 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RA13_20290 7dd11da2efa201d58233549ec7a88110 473 ProSitePatterns PS00217 Sugar transport proteins signature 2. 112 137 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 4 450 4.9E-117 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 Gene3D G3DSA:1.20.1250.20 6 458 5.8E-129 T 13-10-2018 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 SUPERFAMILY SSF103473 8 452 8.89E-78 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_20290 7dd11da2efa201d58233549ec7a88110 473 Pfam PF00083 Sugar (and other) transporter 15 455 3.4E-116 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 PRINTS PR00171 Sugar transporter signature 22 32 1.8E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 PRINTS PR00171 Sugar transporter signature 356 377 1.8E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 PRINTS PR00171 Sugar transporter signature 267 277 1.8E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 PRINTS PR00171 Sugar transporter signature 379 391 1.8E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_20290 7dd11da2efa201d58233549ec7a88110 473 PRINTS PR00171 Sugar transporter signature 107 126 1.8E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_12325 33e112f27938bbcb4a2a4da8e328be3a 220 SUPERFAMILY SSF53955 54 158 3.94E-8 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_12325 33e112f27938bbcb4a2a4da8e328be3a 220 Pfam PF13702 Lysozyme-like 50 203 9.6E-59 T 13-10-2018 RA13_12325 33e112f27938bbcb4a2a4da8e328be3a 220 Gene3D G3DSA:1.10.530.10 47 203 9.1E-47 T 13-10-2018 RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 Gene3D G3DSA:1.10.287.1080 356 488 3.7E-46 T 13-10-2018 RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 SUPERFAMILY SSF101386 362 464 2.29E-23 T 13-10-2018 RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 Gene3D G3DSA:1.10.287.1080 229 352 9.5E-44 T 13-10-2018 RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 SUPERFAMILY SSF53790 3 263 1.05E-33 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 255 328 3.9E-30 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 395 453 4.0E-7 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 PIRSF PIRSF002845 1 488 3.5E-233 T 13-10-2018 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 TIGRFAM TIGR00444 mazG: MazG family protein 239 484 7.2E-121 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 Gene3D G3DSA:3.40.1010.10 1 119 3.0E-11 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 206 3.6E-25 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RA13_01425 f1feb5056e72f782b6563f5b19452fea 495 SUPERFAMILY SSF101386 232 332 1.06E-25 T 13-10-2018 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 SUPERFAMILY SSF53738 209 315 8.24E-20 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Gene3D G3DSA:3.30.310.50 469 572 9.5E-10 T 13-10-2018 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 324 451 1.3E-24 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Gene3D G3DSA:3.40.120.10 325 452 5.7E-37 T 13-10-2018 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Gene3D G3DSA:3.40.120.10 34 190 1.2E-47 T 13-10-2018 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 SUPERFAMILY SSF55957 447 573 3.01E-15 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Gene3D G3DSA:3.40.120.10 209 324 1.2E-22 T 13-10-2018 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 SUPERFAMILY SSF53738 304 455 7.85E-33 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 314 2.6E-23 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 507 560 3.9E-10 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 43 182 3.8E-42 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 SUPERFAMILY SSF53738 30 225 1.1E-46 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 296 311 6.5E-6 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_18695 7a1965d79d302682bc228b3a121b8ada 582 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 139 153 6.5E-6 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RA13_03090 57aee069ca9d167b6bc342a81f6801f1 297 Gene3D G3DSA:1.10.10.2840 173 295 1.7E-12 T 13-10-2018 RA13_03090 57aee069ca9d167b6bc342a81f6801f1 297 Pfam PF13556 PucR C-terminal helix-turn-helix domain 234 287 1.7E-13 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RA13_12330 30ec07bdd07449404c3879c6a2207a5c 110 SUPERFAMILY SSF46785 14 108 2.1E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_12330 30ec07bdd07449404c3879c6a2207a5c 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 2.0E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_12330 30ec07bdd07449404c3879c6a2207a5c 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 29 44 2.0E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_12330 30ec07bdd07449404c3879c6a2207a5c 110 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 76 91 2.0E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_12330 30ec07bdd07449404c3879c6a2207a5c 110 SMART SM00418 27 105 2.4E-35 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_12330 30ec07bdd07449404c3879c6a2207a5c 110 Gene3D G3DSA:1.10.10.10 5 110 2.5E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_12330 30ec07bdd07449404c3879c6a2207a5c 110 Pfam PF01022 Bacterial regulatory protein, arsR family 34 80 3.9E-17 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_19360 2e0ee01bab71a5f06b6f8cb67f949fb2 59 Pfam PF08141 Small acid-soluble spore protein H family 1 58 1.8E-23 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 RA13_19360 2e0ee01bab71a5f06b6f8cb67f949fb2 59 ProDom PD052450 H SPORE ACID-SOLUBLE SMALL SASP SPORULATION SMALL PROTEIN-RELATED SOLUBLE RBL04815 1 58 1.0E-18 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 RA13_19360 2e0ee01bab71a5f06b6f8cb67f949fb2 59 Hamap MF_00667 Small, acid-soluble spore protein H [sspH]. 1 59 20.126 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 RA13_19360 2e0ee01bab71a5f06b6f8cb67f949fb2 59 TIGRFAM TIGR02861 SASP_H: small acid-soluble spore protein, H-type 1 58 8.3E-27 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 RA13_03255 386667f1e3d8a965d8fd36ac461e0cec 210 Gene3D G3DSA:3.30.460.10 12 161 1.6E-51 T 13-10-2018 RA13_03255 386667f1e3d8a965d8fd36ac461e0cec 210 Gene3D G3DSA:1.10.287.860 163 210 1.4E-18 T 13-10-2018 RA13_03255 386667f1e3d8a965d8fd36ac461e0cec 210 Pfam PF04607 Region found in RelA / SpoT proteins 57 178 3.7E-38 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RA13_03255 386667f1e3d8a965d8fd36ac461e0cec 210 SMART SM00954 57 180 1.3E-46 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RA13_03255 386667f1e3d8a965d8fd36ac461e0cec 210 SUPERFAMILY SSF81301 18 209 3.92E-57 T 13-10-2018 RA13_15375 2c7964b069bccd4f4a293db895222b59 257 Gene3D G3DSA:3.40.1010.10 1 117 2.3E-48 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RA13_15375 2c7964b069bccd4f4a293db895222b59 257 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RA13_15375 2c7964b069bccd4f4a293db895222b59 257 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 214 5.6E-54 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RA13_15375 2c7964b069bccd4f4a293db895222b59 257 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 2 238 1.2E-103 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RA13_15375 2c7964b069bccd4f4a293db895222b59 257 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 82 115 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RA13_15375 2c7964b069bccd4f4a293db895222b59 257 SUPERFAMILY SSF53790 1 246 1.27E-84 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RA13_15375 2c7964b069bccd4f4a293db895222b59 257 Gene3D G3DSA:3.30.950.10 118 256 3.8E-45 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 Hamap MF_00372 Imidazolonepropionase [hutI]. 6 412 43.294 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 SUPERFAMILY SSF51556 74 372 3.29E-85 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 Gene3D G3DSA:2.30.40.10 10 410 5.2E-176 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 Pfam PF01979 Amidohydrolase family 71 412 2.6E-20 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 Gene3D G3DSA:3.20.20.140 75 372 5.2E-176 T 13-10-2018 RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 SUPERFAMILY SSF51338 3 72 2.38E-24 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 SUPERFAMILY SSF51338 354 415 2.43E-19 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_02725 3ae0aa8cfb5767bf3a9e47b4bd81c47e 421 TIGRFAM TIGR01224 hutI: imidazolonepropionase 35 410 3.5E-164 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_03385 815f7b99719aa1f8446f5793b8abdbee 201 SUPERFAMILY SSF52833 1 197 2.94E-41 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_03385 815f7b99719aa1f8446f5793b8abdbee 201 Gene3D G3DSA:3.40.30.10 1 196 2.0E-48 T 13-10-2018 RA13_03385 815f7b99719aa1f8446f5793b8abdbee 201 Pfam PF01323 DSBA-like thioredoxin domain 5 193 3.0E-39 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RA13_18115 cd326323b3e95b5180ece85badf96807 571 Gene3D G3DSA:1.20.140.10 411 571 8.4E-27 T 13-10-2018 RA13_18115 cd326323b3e95b5180ece85badf96807 571 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 249 410 5.2E-41 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RA13_18115 cd326323b3e95b5180ece85badf96807 571 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 370 389 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_18115 cd326323b3e95b5180ece85badf96807 571 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 145 237 2.4E-25 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RA13_18115 cd326323b3e95b5180ece85badf96807 571 Gene3D G3DSA:1.20.140.10 249 408 2.4E-134 T 13-10-2018 RA13_18115 cd326323b3e95b5180ece85badf96807 571 Gene3D G3DSA:1.10.540.10 33 143 2.4E-134 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RA13_18115 cd326323b3e95b5180ece85badf96807 571 SUPERFAMILY SSF47203 248 414 2.09E-48 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RA13_18115 cd326323b3e95b5180ece85badf96807 571 Gene3D G3DSA:2.40.110.10 144 248 2.4E-134 T 13-10-2018 RA13_18115 cd326323b3e95b5180ece85badf96807 571 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 29 141 1.4E-24 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RA13_18115 cd326323b3e95b5180ece85badf96807 571 SUPERFAMILY SSF56645 23 260 9.03E-71 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RA13_11450 d368c4492067d8c7a83a3088ef858595 296 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 171 2.5E-47 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RA13_11450 d368c4492067d8c7a83a3088ef858595 296 SMART SM00475 3 264 8.8E-130 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RA13_11450 d368c4492067d8c7a83a3088ef858595 296 SMART SM00279 176 211 2.9E-17 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RA13_11450 d368c4492067d8c7a83a3088ef858595 296 Gene3D G3DSA:1.10.150.20 177 249 3.7E-79 T 13-10-2018 RA13_11450 d368c4492067d8c7a83a3088ef858595 296 SUPERFAMILY SSF47807 174 280 4.78E-26 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RA13_11450 d368c4492067d8c7a83a3088ef858595 296 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 174 261 4.9E-27 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RA13_11450 d368c4492067d8c7a83a3088ef858595 296 SUPERFAMILY SSF88723 2 156 1.05E-44 T 13-10-2018 IPR029060 PIN-like domain superfamily RA13_11450 d368c4492067d8c7a83a3088ef858595 296 Gene3D G3DSA:3.40.50.1010 5 260 3.7E-79 T 13-10-2018 RA13_05810 565ea2c20bb24c396dc7fa5002ee4c11 408 Pfam PF02687 FtsX-like permease family 314 401 6.6E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_05810 565ea2c20bb24c396dc7fa5002ee4c11 408 Pfam PF12704 MacB-like periplasmic core domain 19 241 1.2E-29 T 13-10-2018 IPR025857 MacB-like periplasmic core domain RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 Pfam PF00152 tRNA synthetases class II (D, K and N) 159 496 2.0E-84 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 SUPERFAMILY SSF50249 10 151 3.18E-45 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 PRINTS PR00982 Lysyl-tRNA synthetase signature 211 227 4.0E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 PRINTS PR00982 Lysyl-tRNA synthetase signature 240 253 4.0E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 PRINTS PR00982 Lysyl-tRNA synthetase signature 258 275 4.0E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 PRINTS PR00982 Lysyl-tRNA synthetase signature 195 205 4.0E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 PRINTS PR00982 Lysyl-tRNA synthetase signature 381 397 4.0E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 Gene3D G3DSA:2.40.50.140 11 151 1.8E-46 T 13-10-2018 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 17 499 46.597 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 Pfam PF01336 OB-fold nucleic acid binding domain 65 142 3.4E-15 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 SUPERFAMILY SSF55681 158 497 4.79E-126 T 13-10-2018 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 Gene3D G3DSA:3.30.930.10 152 496 3.7E-141 T 13-10-2018 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 PIRSF PIRSF039101 1 499 3.4E-204 T 13-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_01295 e610b4e344ab6abdc3b9d3d9d93d3931 499 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 10 498 1.1E-233 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RA13_10315 b4b4b4b29548c0c95b94168557a9b9f5 327 SUPERFAMILY SSF52518 2 204 7.85E-74 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_10315 b4b4b4b29548c0c95b94168557a9b9f5 327 Pfam PF02780 Transketolase, C-terminal domain 194 317 1.1E-42 T 13-10-2018 IPR033248 Transketolase, C-terminal domain RA13_10315 b4b4b4b29548c0c95b94168557a9b9f5 327 SMART SM00861 4 179 1.4E-69 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_10315 b4b4b4b29548c0c95b94168557a9b9f5 327 Gene3D G3DSA:3.40.50.920 193 327 2.1E-44 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_10315 b4b4b4b29548c0c95b94168557a9b9f5 327 SUPERFAMILY SSF52922 188 325 2.75E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RA13_10315 b4b4b4b29548c0c95b94168557a9b9f5 327 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 2.8E-52 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RA13_10315 b4b4b4b29548c0c95b94168557a9b9f5 327 Gene3D G3DSA:3.40.50.970 1 192 8.5E-93 T 13-10-2018 RA13_02255 a612437705b9c059aaef7152dc944554 405 TIGRFAM TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent 5 404 8.4E-235 T 13-10-2018 IPR014184 Formaldehyde dehydrogenase, glutathione-independent GO:0016491|GO:0055114 RA13_02255 a612437705b9c059aaef7152dc944554 405 Gene3D G3DSA:3.90.180.10 46 389 4.5E-133 T 13-10-2018 RA13_02255 a612437705b9c059aaef7152dc944554 405 SUPERFAMILY SSF51735 174 364 6.29E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_02255 a612437705b9c059aaef7152dc944554 405 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 78 92 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RA13_02255 a612437705b9c059aaef7152dc944554 405 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 46 155 1.9E-24 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_02255 a612437705b9c059aaef7152dc944554 405 Pfam PF00107 Zinc-binding dehydrogenase 208 277 6.8E-11 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_02255 a612437705b9c059aaef7152dc944554 405 SUPERFAMILY SSF50129 6 196 1.79E-57 T 13-10-2018 IPR011032 GroES-like superfamily RA13_02255 a612437705b9c059aaef7152dc944554 405 Gene3D G3DSA:3.40.50.720 189 352 4.5E-133 T 13-10-2018 RA13_04155 d6840bbc387cb86af621af935b84a369 213 Gene3D G3DSA:3.40.50.720 1 210 1.8E-49 T 13-10-2018 RA13_04155 d6840bbc387cb86af621af935b84a369 213 Pfam PF13460 NAD(P)H-binding 7 199 3.2E-20 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_04155 d6840bbc387cb86af621af935b84a369 213 SUPERFAMILY SSF51735 1 210 3.57E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_12595 b2c22872a45d0f2fe6c99c966a71c194 517 Gene3D G3DSA:3.20.20.70 47 254 3.6E-8 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_12595 b2c22872a45d0f2fe6c99c966a71c194 517 SUPERFAMILY SSF51445 69 334 1.08E-21 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_12595 b2c22872a45d0f2fe6c99c966a71c194 517 Pfam PF02638 Glycosyl hydrolase-like 10 40 361 1.1E-119 T 13-10-2018 IPR003790 Glycosyl hydrolase-like 10 RA13_12595 b2c22872a45d0f2fe6c99c966a71c194 517 Gene3D G3DSA:2.60.40.10 432 517 3.3E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 408 512 8.8E-30 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 SUPERFAMILY SSF55604 453 526 1.19E-19 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 59 356 4.4E-90 T 13-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 Gene3D G3DSA:3.30.1360.60 448 528 5.6E-26 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 Pfam PF02378 Phosphotransferase system, EIIC 10 345 1.2E-74 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 TIGRFAM TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component 2 525 6.8E-267 T 13-10-2018 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component GO:0008982|GO:0009401 RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 Pfam PF00367 phosphotransferase system, EIIB 457 486 6.7E-16 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_19320 e4e0764c5d4b47123a9c369065fea300 528 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 465 482 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_10795 610ad635b250473fe1b501f3e2713748 124 Pfam PF00583 Acetyltransferase (GNAT) family 30 112 2.3E-12 T 13-10-2018 IPR000182 GNAT domain RA13_10795 610ad635b250473fe1b501f3e2713748 124 SUPERFAMILY SSF55729 5 96 1.65E-14 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_10795 610ad635b250473fe1b501f3e2713748 124 Gene3D G3DSA:3.40.630.30 5 123 4.2E-15 T 13-10-2018 RA13_18925 c609535e592875d727b2f9cf54e75982 89 Pfam PF00253 Ribosomal protein S14p/S29e 36 88 1.9E-29 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_18925 c609535e592875d727b2f9cf54e75982 89 SUPERFAMILY SSF57716 2 89 1.78E-33 T 13-10-2018 RA13_18925 c609535e592875d727b2f9cf54e75982 89 Gene3D G3DSA:4.10.830.10 27 89 2.8E-26 T 13-10-2018 RA13_18925 c609535e592875d727b2f9cf54e75982 89 ProSitePatterns PS00527 Ribosomal protein S14 signature. 51 73 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_18925 c609535e592875d727b2f9cf54e75982 89 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 89 25.493 T 13-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 245 2.7E-64 T 13-10-2018 RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 Gene3D G3DSA:3.40.50.720 1 250 4.0E-78 T 13-10-2018 RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 7.5E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.5E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.5E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_19135 a2359fe9965888e3e8a7d695475e4deb 250 SUPERFAMILY SSF51735 3 248 7.72E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_16485 cfda4cb54af9535ec0b406223847d12b 251 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 230 1.2E-14 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_16485 cfda4cb54af9535ec0b406223847d12b 251 Pfam PF04542 Sigma-70 region 2 36 106 4.0E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_16485 cfda4cb54af9535ec0b406223847d12b 251 SUPERFAMILY SSF88946 24 104 2.2E-18 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_16485 cfda4cb54af9535ec0b406223847d12b 251 Gene3D G3DSA:1.10.1740.10 20 103 4.0E-10 T 13-10-2018 RA13_16485 cfda4cb54af9535ec0b406223847d12b 251 TIGRFAM TIGR02895 spore_sigI: RNA polymerase sigma-I factor 22 245 1.5E-87 T 13-10-2018 IPR014244 RNA polymerase sigma-I type RA13_16485 cfda4cb54af9535ec0b406223847d12b 251 PIRSF PIRSF038953 8 251 1.3E-70 T 13-10-2018 IPR014244 RNA polymerase sigma-I type RA13_16485 cfda4cb54af9535ec0b406223847d12b 251 Hamap MF_02064 RNA polymerase sigma factor SigI [sigI]. 17 247 29.699 T 13-10-2018 IPR014244 RNA polymerase sigma-I type RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 SUPERFAMILY SSF52788 1 150 6.93E-49 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 123 138 1.4E-18 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 1.4E-18 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 1.4E-18 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 1.4E-18 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 Gene3D G3DSA:3.40.50.2300 1 156 1.5E-65 T 13-10-2018 RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 147 3.0E-45 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RA13_19475 21e6f5c8d8203cf887e2c8d4d3b6cdb5 156 SMART SM00226 2 149 4.4E-62 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RA13_06145 8aa9ce971c420685e4aa6ef8c6f6654f 284 SUPERFAMILY SSF53613 1 264 2.18E-51 T 13-10-2018 IPR029056 Ribokinase-like RA13_06145 8aa9ce971c420685e4aa6ef8c6f6654f 284 Gene3D G3DSA:3.40.1190.20 1 266 1.4E-48 T 13-10-2018 IPR029056 Ribokinase-like RA13_06145 8aa9ce971c420685e4aa6ef8c6f6654f 284 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 221 234 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RA13_06145 8aa9ce971c420685e4aa6ef8c6f6654f 284 Pfam PF00294 pfkB family carbohydrate kinase 9 263 1.6E-37 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RA13_02945 318363d8a0291345e71566c8a68c5723 382 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 184 363 3.2E-15 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RA13_02945 318363d8a0291345e71566c8a68c5723 382 Gene3D G3DSA:2.60.120.430 16 176 2.8E-60 T 13-10-2018 RA13_02945 318363d8a0291345e71566c8a68c5723 382 Gene3D G3DSA:3.40.50.1110 177 381 2.9E-57 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RA13_02945 318363d8a0291345e71566c8a68c5723 382 SUPERFAMILY SSF49785 30 172 3.49E-39 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RA13_02945 318363d8a0291345e71566c8a68c5723 382 SUPERFAMILY SSF52266 177 377 9.31E-50 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 ProSitePatterns PS01229 Hypothetical cof family signature 2. 198 220 - T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 Gene3D G3DSA:3.40.50.1000 174 244 2.9E-36 T 13-10-2018 IPR023214 HAD superfamily RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 Gene3D G3DSA:3.40.50.1000 11 89 1.1E-25 T 13-10-2018 IPR023214 HAD superfamily RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 TIGRFAM TIGR01487 Pglycolate_arch: phosphoglycolate phosphatase, TA0175-type 10 242 4.0E-36 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 SUPERFAMILY SSF56784 9 248 4.73E-67 T 13-10-2018 IPR036412 HAD-like superfamily RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 221 233 1.8E-5 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 14 28 1.8E-5 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 198 217 1.8E-5 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 TIGRFAM TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily 13 244 3.5E-33 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 ProSitePatterns PS01228 Hypothetical cof family signature 1. 12 23 - T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 Gene3D G3DSA:3.30.1240.10 127 173 2.9E-36 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 Gene3D G3DSA:3.30.1240.10 90 119 1.1E-25 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 12 217 3.0E-27 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 Pfam PF08282 haloacid dehalogenase-like hydrolase 13 122 6.8E-25 T 13-10-2018 RA13_21370 45d682ee3c219b0f8efdac5bb5b657aa 249 Pfam PF08282 haloacid dehalogenase-like hydrolase 126 244 1.7E-31 T 13-10-2018 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Gene3D G3DSA:1.10.287.130 349 420 3.9E-27 T 13-10-2018 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 SMART SM00091 236 302 0.0051 T 13-10-2018 IPR000014 PAS domain RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 516 5.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 530 5.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 561 574 5.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 555 5.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 SUPERFAMILY SSF55874 408 575 1.44E-51 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 465 575 7.4E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 SUPERFAMILY SSF55785 227 344 5.14E-10 T 13-10-2018 IPR035965 PAS domain superfamily RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 235 352 5.1E-7 T 13-10-2018 IPR000014 PAS domain RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Pfam PF00512 His Kinase A (phospho-acceptor) domain 352 418 5.0E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 SUPERFAMILY SSF47384 338 420 7.85E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Pfam PF00989 PAS fold 239 343 2.5E-14 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 SMART SM00387 465 577 3.8E-42 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Pfam PF16736 Single Cache-like 36 141 1.0E-21 T 13-10-2018 IPR031967 PhoR, single Cache-like domain RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Gene3D G3DSA:3.30.450.20 224 348 9.1E-15 T 13-10-2018 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 SMART SM00388 352 419 1.3E-24 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Gene3D G3DSA:3.30.450.20 30 152 4.5E-56 T 13-10-2018 RA13_08145 0604ac0acd666668ac200d53fc7a7a43 578 Gene3D G3DSA:3.30.565.10 426 577 4.1E-50 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_00060 c14bab784583ff442902752fce7654c2 386 PIRSF PIRSF015582 14 371 3.9E-57 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like RA13_00060 c14bab784583ff442902752fce7654c2 386 Gene3D G3DSA:3.20.20.60 258 361 1.2E-7 T 13-10-2018 RA13_00060 c14bab784583ff442902752fce7654c2 386 Gene3D G3DSA:3.20.20.60 29 225 4.7E-7 T 13-10-2018 RA13_00060 c14bab784583ff442902752fce7654c2 386 SUPERFAMILY SSF51621 35 307 3.45E-22 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RA13_00060 c14bab784583ff442902752fce7654c2 386 Pfam PF15617 C-C_Bond_Lyase of the TIM-Barrel fold 31 361 1.8E-128 T 13-10-2018 IPR039480 C-C bond lyase-like RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 2 299 41.756 T 13-10-2018 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 Pfam PF01180 Dihydroorotate dehydrogenase 1 284 8.9E-97 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 237 257 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 PIRSF PIRSF000164 1 301 2.1E-87 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 38 57 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 SUPERFAMILY SSF51395 2 299 6.33E-89 T 13-10-2018 RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 Gene3D G3DSA:3.20.20.70 1 302 1.0E-100 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_15410 ac06fffa2793e064ef5753c2feb3e8e0 311 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 2 300 1.5E-134 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 Gene3D G3DSA:1.10.150.530 19 77 1.4E-22 T 13-10-2018 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 PIRSF PIRSF006004 8 363 1.1E-141 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 Pfam PF04055 Radical SAM superfamily 120 293 6.1E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 Pfam PF13394 4Fe-4S single cluster domain 125 230 2.8E-6 T 13-10-2018 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 17 359 73.655 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 SUPERFAMILY SSF102114 102 312 2.35E-13 T 13-10-2018 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 14 363 4.0E-174 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RA13_15305 896e9d4fb72d76afd47394af919b5a5a 363 Gene3D G3DSA:3.20.20.70 81 344 5.0E-100 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_11540 f9725953379d10b4fc80282285d016ce 178 Gene3D G3DSA:1.10.3760.10 1 164 3.9E-76 T 13-10-2018 RA13_11540 f9725953379d10b4fc80282285d016ce 178 PIRSF PIRSF019587 4 167 2.0E-67 T 13-10-2018 IPR026038 Putative phosphatidylglycerophosphatase RA13_11540 f9725953379d10b4fc80282285d016ce 178 SUPERFAMILY SSF101307 5 162 2.35E-51 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 RA13_11540 f9725953379d10b4fc80282285d016ce 178 Pfam PF04608 Phosphatidylglycerophosphatase A 37 157 5.5E-19 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 SUPERFAMILY SSF53706 3 545 4.45E-146 T 13-10-2018 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Pfam PF00384 Molybdopterin oxidoreductase 60 461 7.0E-59 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Gene3D G3DSA:2.20.25.90 1 62 8.6E-13 T 13-10-2018 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 3 53 3.0E-16 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Gene3D G3DSA:2.40.40.20 530 667 5.7E-23 T 13-10-2018 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Gene3D G3DSA:3.40.228.10 133 527 8.5E-131 T 13-10-2018 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Pfam PF01568 Molydopterin dinucleotide binding domain 561 649 3.8E-11 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Gene3D G3DSA:3.30.2070.10 419 504 8.5E-131 T 13-10-2018 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 SMART SM00926 2 56 5.1E-16 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 Gene3D G3DSA:3.40.50.740 68 465 8.5E-131 T 13-10-2018 RA13_01880 9b0d912663c1158e1cfb863569e013e6 667 SUPERFAMILY SSF50692 512 667 1.83E-23 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RA13_04775 074408e10aeb022341e9937fd9d0a74c 217 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 6.0E-19 T 13-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal RA13_04775 074408e10aeb022341e9937fd9d0a74c 217 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 197 3.3E-88 T 13-10-2018 IPR015796 Impact family, bacterial/archaeal RA13_04775 074408e10aeb022341e9937fd9d0a74c 217 Pfam PF01205 Uncharacterized protein family UPF0029 20 123 4.2E-33 T 13-10-2018 IPR001498 Impact, N-terminal RA13_04775 074408e10aeb022341e9937fd9d0a74c 217 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 79 108 - T 13-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site RA13_04775 074408e10aeb022341e9937fd9d0a74c 217 Gene3D G3DSA:3.30.230.30 1 133 4.8E-53 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily RA13_04775 074408e10aeb022341e9937fd9d0a74c 217 SUPERFAMILY SSF54980 135 195 4.1E-10 T 13-10-2018 IPR035647 EF-G domain III/V-like RA13_04775 074408e10aeb022341e9937fd9d0a74c 217 SUPERFAMILY SSF54211 2 131 4.17E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_16120 eed4eca008415ef3b962dcc41f75fb1d 158 Pfam PF00258 Flavodoxin 6 138 3.7E-30 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RA13_16120 eed4eca008415ef3b962dcc41f75fb1d 158 PRINTS PR00369 Flavodoxin signature 5 18 2.4E-5 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_16120 eed4eca008415ef3b962dcc41f75fb1d 158 PRINTS PR00369 Flavodoxin signature 82 92 2.4E-5 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_16120 eed4eca008415ef3b962dcc41f75fb1d 158 PRINTS PR00369 Flavodoxin signature 53 64 2.4E-5 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_16120 eed4eca008415ef3b962dcc41f75fb1d 158 SUPERFAMILY SSF52218 1 145 5.94E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_16120 eed4eca008415ef3b962dcc41f75fb1d 158 TIGRFAM TIGR01753 flav_short: flavodoxin 5 143 3.1E-49 T 13-10-2018 IPR010087 Flavodoxin, short chain GO:0010181 RA13_16120 eed4eca008415ef3b962dcc41f75fb1d 158 Gene3D G3DSA:3.40.50.360 1 145 1.0E-36 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_05375 c645b59c4b5caca876daab228f250eaa 436 Gene3D G3DSA:1.10.10.1330 80 209 9.2E-26 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily RA13_05375 c645b59c4b5caca876daab228f250eaa 436 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 414 421 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 322 341 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 Pfam PF04552 Sigma-54, DNA binding domain 275 434 2.0E-61 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding RA13_05375 c645b59c4b5caca876daab228f250eaa 436 PIRSF PIRSF000774 1 436 2.8E-120 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 PRINTS PR00045 Sigma-54 factor signature 146 163 1.1E-25 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 PRINTS PR00045 Sigma-54 factor signature 409 427 1.1E-25 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 PRINTS PR00045 Sigma-54 factor signature 334 346 1.1E-25 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 PRINTS PR00045 Sigma-54 factor signature 350 361 1.1E-25 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 48 1.4E-12 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 Pfam PF04963 Sigma-54 factor, core binding domain 78 261 4.5E-49 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 Gene3D G3DSA:1.10.10.60 375 433 3.5E-23 T 13-10-2018 RA13_05375 c645b59c4b5caca876daab228f250eaa 436 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 433 2.6E-136 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 Pfam PF00107 Zinc-binding dehydrogenase 158 295 1.9E-23 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 SUPERFAMILY SSF50129 5 143 3.42E-40 T 13-10-2018 IPR011032 GroES-like superfamily RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 SUPERFAMILY SSF51735 124 301 1.9E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 Gene3D G3DSA:3.40.50.720 126 305 4.9E-134 T 13-10-2018 RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 Gene3D G3DSA:3.90.180.10 10 334 4.9E-134 T 13-10-2018 RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 SMART SM00829 19 334 1.7E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 Pfam PF16884 N-terminal domain of oxidoreductase 7 113 8.4E-38 T 13-10-2018 RA13_19665 3af252d720e7f9350c2d80d7435e77f4 342 SUPERFAMILY SSF50129 286 335 1.51E-5 T 13-10-2018 IPR011032 GroES-like superfamily RA13_10005 911e7e7a948e2a7706b8582bb8181634 106 Gene3D G3DSA:3.10.450.390 21 106 4.5E-32 T 13-10-2018 RA13_10005 911e7e7a948e2a7706b8582bb8181634 106 Pfam PF13028 Protein of unknown function (DUF3889) 15 103 5.6E-30 T 13-10-2018 IPR024987 Protein of unknown function DUF3889 RA13_15020 cfc8afe136467564ee0132ac416e7169 379 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 299 369 8.7E-25 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) RA13_15020 cfc8afe136467564ee0132ac416e7169 379 Gene3D G3DSA:3.40.1550.10 33 228 9.0E-56 T 13-10-2018 IPR028976 CheC-like superfamily RA13_15020 cfc8afe136467564ee0132ac416e7169 379 Pfam PF04509 CheC-like family 37 73 1.2E-15 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 RA13_15020 cfc8afe136467564ee0132ac416e7169 379 Pfam PF04509 CheC-like family 134 170 5.0E-16 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 RA13_15020 cfc8afe136467564ee0132ac416e7169 379 SUPERFAMILY SSF103039 34 222 2.35E-51 T 13-10-2018 IPR028976 CheC-like superfamily RA13_15020 cfc8afe136467564ee0132ac416e7169 379 SUPERFAMILY SSF101801 296 377 2.75E-24 T 13-10-2018 IPR036429 SpoA-like superfamily RA13_15020 cfc8afe136467564ee0132ac416e7169 379 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 296 371 5.7E-31 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 RA13_15020 cfc8afe136467564ee0132ac416e7169 379 Gene3D G3DSA:2.30.330.10 287 379 5.1E-35 T 13-10-2018 IPR036429 SpoA-like superfamily RA13_15020 cfc8afe136467564ee0132ac416e7169 379 PRINTS PR00956 Flagellar motor switch protein FliN signature 316 332 1.3E-29 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RA13_15020 cfc8afe136467564ee0132ac416e7169 379 PRINTS PR00956 Flagellar motor switch protein FliN signature 299 315 1.3E-29 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RA13_15020 cfc8afe136467564ee0132ac416e7169 379 PRINTS PR00956 Flagellar motor switch protein FliN signature 332 345 1.3E-29 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RA13_15020 cfc8afe136467564ee0132ac416e7169 379 PRINTS PR00956 Flagellar motor switch protein FliN signature 345 360 1.3E-29 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 RA13_05320 a8b432589a0817ee84bd5bba6ba1fb61 382 SUPERFAMILY SSF53756 7 374 2.98E-58 T 13-10-2018 RA13_05320 a8b432589a0817ee84bd5bba6ba1fb61 382 Pfam PF13439 Glycosyltransferase Family 4 18 182 4.4E-19 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RA13_05320 a8b432589a0817ee84bd5bba6ba1fb61 382 Pfam PF00534 Glycosyl transferases group 1 192 309 3.9E-24 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_05320 a8b432589a0817ee84bd5bba6ba1fb61 382 Gene3D G3DSA:3.40.50.2000 18 178 4.6E-53 T 13-10-2018 RA13_05320 a8b432589a0817ee84bd5bba6ba1fb61 382 Gene3D G3DSA:3.40.50.2000 179 309 4.6E-53 T 13-10-2018 RA13_09005 181d760ad321625ef299c1c13b540687 424 Pfam PF13393 Histidyl-tRNA synthetase 8 313 1.6E-50 T 13-10-2018 RA13_09005 181d760ad321625ef299c1c13b540687 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 5 410 4.5E-160 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RA13_09005 181d760ad321625ef299c1c13b540687 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 420 34.759 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RA13_09005 181d760ad321625ef299c1c13b540687 424 SUPERFAMILY SSF55681 3 317 1.38E-98 T 13-10-2018 RA13_09005 181d760ad321625ef299c1c13b540687 424 Gene3D G3DSA:3.40.50.800 328 417 2.7E-27 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily RA13_09005 181d760ad321625ef299c1c13b540687 424 SUPERFAMILY SSF52954 329 419 3.47E-25 T 13-10-2018 RA13_09005 181d760ad321625ef299c1c13b540687 424 Pfam PF03129 Anticodon binding domain 331 420 1.1E-18 T 13-10-2018 IPR004154 Anticodon-binding RA13_09005 181d760ad321625ef299c1c13b540687 424 PIRSF PIRSF001549 1 422 5.5E-123 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 RA13_09005 181d760ad321625ef299c1c13b540687 424 Gene3D G3DSA:3.30.930.10 2 324 8.2E-118 T 13-10-2018 RA13_05315 878522c1dbb9ff82a4f64862f13fc041 280 Gene3D G3DSA:3.90.550.10 2 248 5.0E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_05315 878522c1dbb9ff82a4f64862f13fc041 280 Pfam PF00535 Glycosyl transferase family 2 10 163 4.9E-34 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_05315 878522c1dbb9ff82a4f64862f13fc041 280 SUPERFAMILY SSF53448 7 229 2.6E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_08785 5288c518fd87b25358e55e5090458bc0 285 Gene3D G3DSA:3.40.190.10 5 182 3.5E-55 T 13-10-2018 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 Gene3D G3DSA:3.30.70.260 196 285 6.5E-24 T 13-10-2018 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 SUPERFAMILY SSF53850 1 185 1.86E-53 T 13-10-2018 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 Pfam PF00800 Prephenate dehydratase 3 185 1.6E-56 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 159 181 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 Pfam PF01842 ACT domain 211 258 1.4E-6 T 13-10-2018 IPR002912 ACT domain RA13_08785 5288c518fd87b25358e55e5090458bc0 285 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 230 237 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 SUPERFAMILY SSF55021 197 281 1.2E-22 T 13-10-2018 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 Gene3D G3DSA:3.40.190.10 84 173 3.5E-55 T 13-10-2018 RA13_08785 5288c518fd87b25358e55e5090458bc0 285 PIRSF PIRSF001500 1 285 1.5E-68 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RA13_00200 bb4f38c488e5980d8d2bdd5ad5e3488d 142 Pfam PF07486 Cell Wall Hydrolase 24 128 2.3E-19 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 RA13_00200 bb4f38c488e5980d8d2bdd5ad5e3488d 142 Gene3D G3DSA:1.10.10.2520 8 91 1.0E-13 T 13-10-2018 RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 SUPERFAMILY SSF52096 4 251 7.09E-74 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 SUPERFAMILY SSF52096 238 506 4.84E-82 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 189 200 5.2E-5 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 124 142 5.2E-5 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 90 104 5.2E-5 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 Pfam PF01039 Carboxyl transferase domain 26 504 4.1E-185 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 Gene3D G3DSA:3.90.226.10 1 252 5.8E-89 T 13-10-2018 RA13_10370 052ca988aa2bffa8e9255316203a2ffb 506 Gene3D G3DSA:3.90.226.10 253 506 2.5E-87 T 13-10-2018 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 SUPERFAMILY SSF103473 7 528 7.46E-79 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 Pfam PF07690 Major Facilitator Superfamily 17 408 3.3E-53 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 ProSitePatterns PS00216 Sugar transport proteins signature 1. 66 82 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 465 1.1E-88 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 PRINTS PR01036 Tetracycline resistance protein TetB signature 106 126 1.2E-13 T 13-10-2018 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 PRINTS PR01036 Tetracycline resistance protein TetB signature 399 418 1.2E-13 T 13-10-2018 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 PRINTS PR01036 Tetracycline resistance protein TetB signature 301 325 1.2E-13 T 13-10-2018 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 1.2E-13 T 13-10-2018 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 PRINTS PR01036 Tetracycline resistance protein TetB signature 16 40 1.2E-13 T 13-10-2018 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 Gene3D G3DSA:1.20.1250.20 253 425 1.5E-23 T 13-10-2018 RA13_05995 ac2b10486fd1ab5b7bae7927ca7a479d 539 Gene3D G3DSA:1.20.1720.10 13 196 1.5E-49 T 13-10-2018 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 Gene3D G3DSA:3.40.50.1380 1 197 5.7E-88 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 SMART SM00798 135 447 6.3E-198 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 Gene3D G3DSA:3.40.140.20 386 512 2.0E-57 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 SMART SM00851 15 130 2.8E-55 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 PIRSF PIRSF000414 1 512 2.4E-215 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 Pfam PF01808 AICARFT/IMPCHase bienzyme 135 446 1.0E-120 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 Pfam PF02142 MGS-like domain 16 129 1.7E-28 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 512 45.09 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4 512 7.8E-256 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 Gene3D G3DSA:3.40.140.20 204 362 1.8E-59 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 SUPERFAMILY SSF52335 3 195 7.46E-71 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RA13_20130 4f610673bfd9de0e27924fedad766d4b 512 SUPERFAMILY SSF53927 208 512 3.81E-128 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RA13_11760 de628fcc204c20cf65856fab7d5f80b4 74 SUPERFAMILY SSF140652 1 71 1.01E-30 T 13-10-2018 IPR036806 YozE SAM-like superfamily RA13_11760 de628fcc204c20cf65856fab7d5f80b4 74 Hamap MF_01538 UPF0346 protein . 1 70 23.756 T 13-10-2018 IPR010673 Protein of unknown function UPF0346 RA13_11760 de628fcc204c20cf65856fab7d5f80b4 74 Pfam PF06855 YozE SAM-like fold 3 68 5.1E-29 T 13-10-2018 IPR023089 YozE SAM-like domain RA13_11760 de628fcc204c20cf65856fab7d5f80b4 74 PIRSF PIRSF037262 1 71 5.7E-36 T 13-10-2018 IPR010673 Protein of unknown function UPF0346 RA13_11760 de628fcc204c20cf65856fab7d5f80b4 74 Gene3D G3DSA:1.10.150.260 1 72 4.7E-31 T 13-10-2018 IPR036806 YozE SAM-like superfamily RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 Gene3D G3DSA:1.10.1740.10 5 109 7.7E-32 T 13-10-2018 RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 45 76 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 184 1.0E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 SUPERFAMILY SSF88946 8 98 2.51E-30 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 Pfam PF04542 Sigma-70 region 2 25 89 5.3E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 SUPERFAMILY SSF88659 117 185 3.55E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 TIGRFAM TIGR02948 SigW_bacill: RNA polymerase sigma-W factor 1 187 7.3E-110 T 13-10-2018 IPR014294 RNA polymerase sigma-W, bacillaceae RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 Gene3D G3DSA:1.10.10.10 121 187 1.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00675 7431e56e337fc60ed4fd5102cc930c12 187 Pfam PF08281 Sigma-70, region 4 130 180 5.0E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_19650 9d049a56e679989bf6a400e1834b3139 333 Gene3D G3DSA:1.10.3470.10 7 332 6.9E-95 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_19650 9d049a56e679989bf6a400e1834b3139 333 SUPERFAMILY SSF81345 8 328 3.79E-83 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_19650 9d049a56e679989bf6a400e1834b3139 333 Pfam PF01032 FecCD transport family 23 328 2.2E-95 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_11175 6cecc2ba32a0a0b46769ce1f0d302991 290 PIRSF PIRSF006483 1 284 1.4E-100 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_11175 6cecc2ba32a0a0b46769ce1f0d302991 290 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 222 276 3.9E-23 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 RA13_11175 6cecc2ba32a0a0b46769ce1f0d302991 290 Gene3D G3DSA:3.30.70.120 194 269 7.5E-26 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_11175 6cecc2ba32a0a0b46769ce1f0d302991 290 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 9 217 4.0E-63 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_06470 16990a41e7d6dd874f31095efb34e8d5 200 PIRSF PIRSF016661 1 192 2.1E-41 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RA13_06470 16990a41e7d6dd874f31095efb34e8d5 200 Gene3D G3DSA:1.10.1760.20 1 189 2.7E-44 T 13-10-2018 RA13_06470 16990a41e7d6dd874f31095efb34e8d5 200 Pfam PF02632 BioY family 38 182 4.2E-30 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 RA13_00670 94c6c1d2e02faccbbf930c4101292abb 208 Gene3D G3DSA:1.10.10.1320 7 94 2.5E-5 T 13-10-2018 RA13_00670 94c6c1d2e02faccbbf930c4101292abb 208 Pfam PF04519 Polymer-forming cytoskeletal 125 178 4.3E-6 T 13-10-2018 IPR007607 Bactofilin A/B RA13_00670 94c6c1d2e02faccbbf930c4101292abb 208 Pfam PF13490 Putative zinc-finger 3 38 3.8E-6 T 13-10-2018 IPR027383 Putative zinc-finger RA13_20640 2b8b8470209b930027e229d0c31f1ff1 253 Gene3D G3DSA:3.60.15.10 1 252 1.8E-66 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_20640 2b8b8470209b930027e229d0c31f1ff1 253 Pfam PF12706 Beta-lactamase superfamily domain 20 216 5.3E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_20640 2b8b8470209b930027e229d0c31f1ff1 253 SMART SM00849 6 203 0.0013 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_20640 2b8b8470209b930027e229d0c31f1ff1 253 SUPERFAMILY SSF56281 2 253 1.76E-17 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_18595 84468547802f671ae0f64b22e724d275 475 PIRSF PIRSF006060 1 474 3.2E-82 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_18595 84468547802f671ae0f64b22e724d275 475 Gene3D G3DSA:1.20.1740.10 9 474 5.5E-65 T 13-10-2018 RA13_18595 84468547802f671ae0f64b22e724d275 475 Pfam PF00324 Amino acid permease 18 460 6.7E-128 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_18595 84468547802f671ae0f64b22e724d275 475 ProSitePatterns PS00218 Amino acid permeases signature. 43 74 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RA13_06835 85c7d55e869a1a2ab49c92e7cc2d67b0 84 Gene3D G3DSA:1.10.220.90 1 75 6.6E-33 T 13-10-2018 IPR038193 Mistic superfamily RA13_06835 85c7d55e869a1a2ab49c92e7cc2d67b0 84 Pfam PF11458 Membrane-integrating protein Mistic 1 83 5.8E-46 T 13-10-2018 IPR021078 Membrane-integrating protein Mistic RA13_18400 39bbe5fa6c351845c41ef3a26ee68c66 429 Gene3D G3DSA:3.50.50.60 1 422 3.8E-110 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18400 39bbe5fa6c351845c41ef3a26ee68c66 429 SUPERFAMILY SSF51905 1 226 9.18E-19 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18400 39bbe5fa6c351845c41ef3a26ee68c66 429 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 1 335 4.6E-108 T 13-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase RA13_03830 2df064991b69fef029f2b9e3ef585477 184 Pfam PF02613 Nitrate reductase delta subunit 42 154 8.9E-7 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone RA13_03830 2df064991b69fef029f2b9e3ef585477 184 SUPERFAMILY SSF89155 6 169 7.33E-28 T 13-10-2018 IPR036411 TorD-like superfamily RA13_03830 2df064991b69fef029f2b9e3ef585477 184 Gene3D G3DSA:1.10.4070.10 72 154 1.1E-11 T 13-10-2018 RA13_03830 2df064991b69fef029f2b9e3ef585477 184 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 14 165 3.9E-60 T 13-10-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 RA13_03830 2df064991b69fef029f2b9e3ef585477 184 Gene3D G3DSA:1.20.120.700 13 163 1.1E-11 T 13-10-2018 RA13_06570 20ee92d487428684ef020c40660fc1d9 243 Pfam PF00106 short chain dehydrogenase 5 192 6.1E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06570 20ee92d487428684ef020c40660fc1d9 243 Gene3D G3DSA:3.40.50.720 1 239 8.7E-49 T 13-10-2018 RA13_06570 20ee92d487428684ef020c40660fc1d9 243 SUPERFAMILY SSF51735 4 230 1.65E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06570 20ee92d487428684ef020c40660fc1d9 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_06570 20ee92d487428684ef020c40660fc1d9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 6.5E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06570 20ee92d487428684ef020c40660fc1d9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 6.5E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06570 20ee92d487428684ef020c40660fc1d9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 6.5E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06570 20ee92d487428684ef020c40660fc1d9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 6.5E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06570 20ee92d487428684ef020c40660fc1d9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 6.5E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06570 20ee92d487428684ef020c40660fc1d9 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 6.5E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15300 1b5e090d89353a41a5ec981d1755929b 254 SUPERFAMILY SSF81606 5 242 1.18E-66 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_15300 1b5e090d89353a41a5ec981d1755929b 254 SMART SM00332 1 241 1.7E-35 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_15300 1b5e090d89353a41a5ec981d1755929b 254 Gene3D G3DSA:3.60.40.10 2 245 1.9E-74 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_15300 1b5e090d89353a41a5ec981d1755929b 254 SMART SM00331 7 243 2.3E-69 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_15300 1b5e090d89353a41a5ec981d1755929b 254 Pfam PF13672 Protein phosphatase 2C 14 216 1.2E-22 T 13-10-2018 RA13_06480 dc6af7582a2821c8eafe279f05cbf217 61 Pfam PF13783 Domain of unknown function (DUF4177) 3 60 1.8E-16 T 13-10-2018 IPR025234 Protein of unknown function DUF4177 RA13_13165 f5a3b663b73b80914512fe4a36a60d58 111 Pfam PF00085 Thioredoxin 15 86 7.5E-7 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RA13_13165 f5a3b663b73b80914512fe4a36a60d58 111 SUPERFAMILY SSF52833 5 104 2.5E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_13165 f5a3b663b73b80914512fe4a36a60d58 111 Gene3D G3DSA:3.40.30.10 4 107 1.4E-21 T 13-10-2018 RA13_04675 e0fffc3d0e047d977e5e0039a783339c 725 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 350 721 7.3E-131 T 13-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 RA13_04675 e0fffc3d0e047d977e5e0039a783339c 725 Gene3D G3DSA:3.40.50.12580 526 708 1.8E-143 T 13-10-2018 RA13_04675 e0fffc3d0e047d977e5e0039a783339c 725 SUPERFAMILY SSF53756 483 646 3.3E-10 T 13-10-2018 RA13_04675 e0fffc3d0e047d977e5e0039a783339c 725 Gene3D G3DSA:3.40.50.11820 354 715 1.8E-143 T 13-10-2018 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 ProSitePatterns PS00321 recA signature. 212 220 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 Gene3D G3DSA:3.40.50.300 25 266 2.6E-82 T 13-10-2018 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 PRINTS PR00142 RecA protein signature 296 313 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 PRINTS PR00142 RecA protein signature 92 121 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 PRINTS PR00142 RecA protein signature 209 237 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 PRINTS PR00142 RecA protein signature 242 271 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 PRINTS PR00142 RecA protein signature 126 155 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 PRINTS PR00142 RecA protein signature 164 193 3.8E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 SMART SM00382 56 227 3.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 3 323 1.9E-177 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 Hamap MF_00268 Protein RecA [recA]. 4 328 53.16 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 SUPERFAMILY SSF54752 267 326 9.42E-22 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 Pfam PF00154 recA bacterial DNA recombination protein 7 267 2.5E-147 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 SUPERFAMILY SSF52540 3 266 2.1E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14705 36993efe42d70ed787e25c8b6501e08b 347 Gene3D G3DSA:3.30.250.10 267 345 1.5E-29 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 SUPERFAMILY SSF88659 115 177 3.27E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 Pfam PF08281 Sigma-70, region 4 119 171 1.9E-13 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 Gene3D G3DSA:1.10.1740.10 2 115 4.2E-28 T 13-10-2018 RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 175 8.5E-30 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 Pfam PF04542 Sigma-70 region 2 24 92 3.6E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 SUPERFAMILY SSF88946 4 99 9.03E-26 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 Gene3D G3DSA:1.10.10.10 116 180 1.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_06265 0d93a7d962cc5ed850f029c98906f882 182 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 78 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_07065 0f50841bb9107000532e7aebf58d8c92 402 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 273 293 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_07065 0f50841bb9107000532e7aebf58d8c92 402 Gene3D G3DSA:3.40.50.1970 3 197 1.3E-58 T 13-10-2018 RA13_07065 0f50841bb9107000532e7aebf58d8c92 402 SUPERFAMILY SSF56796 12 395 6.93E-120 T 13-10-2018 RA13_07065 0f50841bb9107000532e7aebf58d8c92 402 Gene3D G3DSA:1.20.1090.10 199 397 4.0E-60 T 13-10-2018 RA13_07065 0f50841bb9107000532e7aebf58d8c92 402 Pfam PF00465 Iron-containing alcohol dehydrogenase 19 385 1.4E-116 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RA13_07065 0f50841bb9107000532e7aebf58d8c92 402 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 186 214 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_03880 bbb30d0069923e00d53327edd5f9ec2f 177 Hamap MF_00357 Probable DNA-directed RNA polymerase subunit delta [rpoE]. 9 172 16.462 T 13-10-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 RA13_03880 bbb30d0069923e00d53327edd5f9ec2f 177 TIGRFAM TIGR04567 RNAP_delt_lowGC: DNA-directed RNA polymerase delta subunit 12 93 3.8E-32 T 13-10-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 RA13_03880 bbb30d0069923e00d53327edd5f9ec2f 177 Gene3D G3DSA:1.10.10.1250 2 82 1.6E-32 T 13-10-2018 IPR038087 DNA-directed RNA polymerase subunit delta domain superfamily RA13_03880 bbb30d0069923e00d53327edd5f9ec2f 177 Pfam PF05066 HB1, ASXL, restriction endonuclease HTH domain 14 81 2.9E-12 T 13-10-2018 IPR007759 HB1/Asxl, restriction endonuclease HTH domain GO:0006351|GO:0006355 RA13_12035 5057113ac3b23ed368b08d35ed3c7b52 208 Pfam PF04586 Caudovirus prohead serine protease 13 183 4.8E-38 T 13-10-2018 IPR006433 Prohead protease RA13_12035 5057113ac3b23ed368b08d35ed3c7b52 208 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 25 176 6.4E-21 T 13-10-2018 IPR006433 Prohead protease RA13_01120 f51ce1251ab0398978107ae4d0907227 141 SUPERFAMILY SSF46906 67 140 8.24E-28 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RA13_01120 f51ce1251ab0398978107ae4d0907227 141 SMART SM00649 9 140 3.7E-89 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RA13_01120 f51ce1251ab0398978107ae4d0907227 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01120 f51ce1251ab0398978107ae4d0907227 141 Gene3D G3DSA:1.10.10.250 72 140 2.6E-30 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RA13_01120 f51ce1251ab0398978107ae4d0907227 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 1.9E-31 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal RA13_01120 f51ce1251ab0398978107ae4d0907227 141 SUPERFAMILY SSF54747 2 84 7.72E-31 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RA13_01120 f51ce1251ab0398978107ae4d0907227 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 2.3E-26 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RA13_01120 f51ce1251ab0398978107ae4d0907227 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 32.064 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RA13_01120 f51ce1251ab0398978107ae4d0907227 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 2.0E-16 T 13-10-2018 RA13_01120 f51ce1251ab0398978107ae4d0907227 141 Gene3D G3DSA:3.30.1550.10 2 71 6.1E-35 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RA13_01120 f51ce1251ab0398978107ae4d0907227 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 2.8E-65 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 Pfam PF02056 Family 4 glycosyl hydrolase 11 188 4.2E-59 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 SUPERFAMILY SSF51735 9 169 2.44E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 PRINTS PR00732 Glycosyl hydrolase family 4 signature 11 26 1.1E-34 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 PRINTS PR00732 Glycosyl hydrolase family 4 signature 97 110 1.1E-34 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 1.1E-34 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 1.1E-34 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 PRINTS PR00732 Glycosyl hydrolase family 4 signature 168 179 1.1E-34 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 PRINTS PR00732 Glycosyl hydrolase family 4 signature 201 213 1.1E-34 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 PRINTS PR00732 Glycosyl hydrolase family 4 signature 76 92 1.1E-34 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 SUPERFAMILY SSF56327 172 443 5.53E-40 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 205 425 9.9E-47 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 RA13_19820 dc2101ccab7d8deda1bbd1d24ead422a 448 Gene3D G3DSA:3.90.1820.20 5 446 5.0E-158 T 13-10-2018 RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 SUPERFAMILY SSF51182 10 378 1.92E-103 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 Gene3D G3DSA:2.60.120.10 8 373 9.0E-176 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 Pfam PF00190 Cupin 229 366 7.6E-26 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 Pfam PF00190 Cupin 56 190 1.9E-25 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 Gene3D G3DSA:2.60.120.10 56 229 9.0E-176 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 SMART SM00835 50 192 2.1E-20 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 SMART SM00835 228 369 1.1E-29 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_05820 368e4195c673abec527cf4906d7dd8c4 385 TIGRFAM TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family 14 379 3.5E-182 T 13-10-2018 IPR017774 Bicupin, oxalate decarboxylase/oxidase GO:0033609 KEGG: 00630+4.1.1.2|MetaCyc: PWY-6698 RA13_04540 c404f5ae021dc53bc17b94ccf89414dc 305 Pfam PF13407 Periplasmic binding protein domain 40 290 5.1E-68 T 13-10-2018 IPR025997 Periplasmic binding protein RA13_04540 c404f5ae021dc53bc17b94ccf89414dc 305 Gene3D G3DSA:3.40.50.2300 44 290 7.5E-94 T 13-10-2018 RA13_04540 c404f5ae021dc53bc17b94ccf89414dc 305 SUPERFAMILY SSF53822 22 303 2.77E-89 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_04540 c404f5ae021dc53bc17b94ccf89414dc 305 Gene3D G3DSA:3.40.50.2300 138 271 7.5E-94 T 13-10-2018 RA13_20790 91fb8688576a84d7cb90f7cf0e639e46 153 Pfam PF02559 CarD-like/TRCF domain 2 110 7.0E-18 T 13-10-2018 IPR003711 CarD-like/TRCF domain RA13_20790 91fb8688576a84d7cb90f7cf0e639e46 153 SUPERFAMILY SSF141259 1 60 6.93E-12 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily RA13_20790 91fb8688576a84d7cb90f7cf0e639e46 153 SMART SM01058 1 111 2.8E-29 T 13-10-2018 IPR003711 CarD-like/TRCF domain RA13_20790 91fb8688576a84d7cb90f7cf0e639e46 153 Gene3D G3DSA:2.30.30.840 1 61 3.4E-25 T 13-10-2018 RA13_20790 91fb8688576a84d7cb90f7cf0e639e46 153 Gene3D G3DSA:1.20.58.1290 62 153 2.8E-27 T 13-10-2018 RA13_14670 d1b6391ffec9a476174d9670f7e82fbd 215 ProDom PD002660 TRANSFERASE CHLORAMPHENICOL ACYLTRANSFERASE ACETYLTRANSFERASE ANTIBIOTIC RESISTANCE PLASMID CAT O-ACETYLTRANSFERASE DIRECT 13 204 2.0E-72 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 RA13_14670 d1b6391ffec9a476174d9670f7e82fbd 215 SMART SM01059 1 205 7.0E-110 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 RA13_14670 d1b6391ffec9a476174d9670f7e82fbd 215 PIRSF PIRSF000440 1 214 7.3E-82 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 RA13_14670 d1b6391ffec9a476174d9670f7e82fbd 215 SUPERFAMILY SSF52777 1 211 1.43E-68 T 13-10-2018 RA13_14670 d1b6391ffec9a476174d9670f7e82fbd 215 Pfam PF00302 Chloramphenicol acetyltransferase 3 205 5.3E-84 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 RA13_14670 d1b6391ffec9a476174d9670f7e82fbd 215 Gene3D G3DSA:3.30.559.10 1 208 3.9E-66 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_14670 d1b6391ffec9a476174d9670f7e82fbd 215 ProSitePatterns PS00100 Chloramphenicol acetyltransferase active site. 186 196 - T 13-10-2018 IPR018372 Chloramphenicol acetyltransferase, active site GO:0008811 RA13_10270 b947f9ef1db04114f1ab2436217d88b7 471 SUPERFAMILY SSF103378 4 470 1.7E-155 T 13-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 RA13_10270 b947f9ef1db04114f1ab2436217d88b7 471 Gene3D G3DSA:3.30.1330.120 277 415 2.2E-188 T 13-10-2018 RA13_10270 b947f9ef1db04114f1ab2436217d88b7 471 Pfam PF03972 MmgE/PrpD family 9 456 8.1E-152 T 13-10-2018 IPR005656 MmgE/PrpD GO:0016829 RA13_10270 b947f9ef1db04114f1ab2436217d88b7 471 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 5 471 8.9E-259 T 13-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 RA13_10270 b947f9ef1db04114f1ab2436217d88b7 471 Gene3D G3DSA:1.10.4100.10 14 450 2.2E-188 T 13-10-2018 RA13_20610 1b30018bb05c88e1c839cc682bcf7d0f 271 Pfam PF00905 Penicillin binding protein transpeptidase domain 70 256 8.4E-35 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_20610 1b30018bb05c88e1c839cc682bcf7d0f 271 SUPERFAMILY SSF56601 52 263 6.34E-34 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_20610 1b30018bb05c88e1c839cc682bcf7d0f 271 Gene3D G3DSA:3.40.710.10 37 270 1.4E-92 T 13-10-2018 RA13_20610 1b30018bb05c88e1c839cc682bcf7d0f 271 ProSitePatterns PS00337 Beta-lactamase class-D active site. 80 90 - T 13-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 RA13_20050 b25c0eadb78c05ad7230306ed97dca10 96 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 96 3.5E-37 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RA13_20050 b25c0eadb78c05ad7230306ed97dca10 96 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 91 2.8E-24 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RA13_20050 b25c0eadb78c05ad7230306ed97dca10 96 SUPERFAMILY SSF141000 3 94 2.62E-33 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 RA13_20050 b25c0eadb78c05ad7230306ed97dca10 96 Gene3D G3DSA:1.10.20.60 1 94 1.2E-33 T 13-10-2018 RA13_20050 b25c0eadb78c05ad7230306ed97dca10 96 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 3 96 26.27 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RA13_05370 08493a5fad2bc38e462b47dea9182b9b 72 SUPERFAMILY SSF158388 3 69 2.62E-35 T 13-10-2018 IPR037247 YvfG domain superfamily RA13_05370 08493a5fad2bc38e462b47dea9182b9b 72 Pfam PF09628 YvfG protein 3 69 3.3E-40 T 13-10-2018 IPR018590 Uncharacterised domain YvfG RA13_20750 3dc78495719d26386e18b6f606579d2a 258 Gene3D G3DSA:3.10.310.10 3 250 6.2E-100 T 13-10-2018 RA13_20750 3dc78495719d26386e18b6f606579d2a 258 Pfam PF02567 Phenazine biosynthesis-like protein 6 250 2.6E-59 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RA13_20750 3dc78495719d26386e18b6f606579d2a 258 Gene3D G3DSA:3.10.310.10 115 246 6.2E-100 T 13-10-2018 RA13_20750 3dc78495719d26386e18b6f606579d2a 258 PIRSF PIRSF016184 1 258 2.5E-63 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RA13_20750 3dc78495719d26386e18b6f606579d2a 258 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 252 2.2E-38 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RA13_20750 3dc78495719d26386e18b6f606579d2a 258 SUPERFAMILY SSF54506 2 251 9.82E-80 T 13-10-2018 RA13_09585 9763c80495848fa954bc7769cb6beb21 256 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 3 251 1.0E-83 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RA13_09585 9763c80495848fa954bc7769cb6beb21 256 SUPERFAMILY SSF75217 74 251 1.0E-55 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RA13_09585 9763c80495848fa954bc7769cb6beb21 256 PIRSF PIRSF015601 1 251 1.4E-63 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RA13_09585 9763c80495848fa954bc7769cb6beb21 256 SUPERFAMILY SSF88697 2 71 5.22E-16 T 13-10-2018 IPR015947 PUA-like superfamily RA13_09585 9763c80495848fa954bc7769cb6beb21 256 Gene3D G3DSA:3.40.1280.10 1 256 2.1E-100 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RA13_09585 9763c80495848fa954bc7769cb6beb21 256 Pfam PF04452 RNA methyltransferase 20 247 6.0E-77 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RA13_02010 b15813e2a6e8ac49cd0e25487a2743d6 724 Gene3D G3DSA:1.20.1640.10 175 347 4.9E-10 T 13-10-2018 RA13_02010 b15813e2a6e8ac49cd0e25487a2743d6 724 SUPERFAMILY SSF82866 453 686 5.23E-29 T 13-10-2018 RA13_02010 b15813e2a6e8ac49cd0e25487a2743d6 724 SUPERFAMILY SSF82866 141 334 4.45E-29 T 13-10-2018 RA13_02010 b15813e2a6e8ac49cd0e25487a2743d6 724 Pfam PF03176 MMPL family 422 690 2.7E-37 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RA13_02010 b15813e2a6e8ac49cd0e25487a2743d6 724 Pfam PF03176 MMPL family 45 361 2.4E-80 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RA13_04275 96a79af97af42b8bda00a62c156f7f31 398 Gene3D G3DSA:1.20.1250.20 4 387 3.9E-54 T 13-10-2018 RA13_04275 96a79af97af42b8bda00a62c156f7f31 398 Pfam PF07690 Major Facilitator Superfamily 245 386 3.9E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_04275 96a79af97af42b8bda00a62c156f7f31 398 Pfam PF07690 Major Facilitator Superfamily 16 237 1.3E-30 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_04275 96a79af97af42b8bda00a62c156f7f31 398 SUPERFAMILY SSF103473 8 389 2.09E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 Gene3D G3DSA:3.90.740.10 194 398 9.2E-264 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 633 2.2E-222 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 915 20.693 T 13-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 553 562 1.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 391 406 1.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 519 532 1.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 229 252 1.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 50 61 1.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 SUPERFAMILY SSF52374 1 640 2.65E-155 T 13-10-2018 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 Gene3D G3DSA:1.10.730.20 632 917 2.3E-91 T 13-10-2018 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 SUPERFAMILY SSF47323 644 916 1.68E-74 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 Pfam PF08264 Anticodon-binding domain of tRNA 677 830 4.2E-32 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 SUPERFAMILY SSF50677 203 393 2.93E-63 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 832 0.0 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_15465 d1a27a3c6c5ed10c5598e2800cc7d2da 920 Gene3D G3DSA:3.40.50.620 24 621 9.2E-264 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_04495 529c28de0aa0c37613a0730013b8e2a9 206 SMART SM00903 20 172 9.8E-27 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RA13_04495 529c28de0aa0c37613a0730013b8e2a9 206 Gene3D G3DSA:2.30.110.10 1 206 6.9E-61 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RA13_04495 529c28de0aa0c37613a0730013b8e2a9 206 SUPERFAMILY SSF50475 2 201 2.94E-40 T 13-10-2018 RA13_04495 529c28de0aa0c37613a0730013b8e2a9 206 Pfam PF01613 Flavin reductase like domain 23 168 4.5E-19 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RA13_05860 d6f003df7cc736be8a0970a14dd7f2e7 317 Gene3D G3DSA:3.40.50.1980 60 181 1.2E-40 T 13-10-2018 RA13_05860 d6f003df7cc736be8a0970a14dd7f2e7 317 Pfam PF01497 Periplasmic binding protein 63 290 5.6E-42 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_05860 d6f003df7cc736be8a0970a14dd7f2e7 317 Gene3D G3DSA:3.40.50.1980 183 313 6.8E-39 T 13-10-2018 RA13_05860 d6f003df7cc736be8a0970a14dd7f2e7 317 SUPERFAMILY SSF53807 42 313 8.63E-68 T 13-10-2018 RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 Gene3D G3DSA:3.10.20.580 449 555 4.7E-39 T 13-10-2018 RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 Gene3D G3DSA:3.40.50.10710 207 357 1.5E-194 T 13-10-2018 RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 Hamap MF_01491 Ribonuclease J [rnj]. 4 555 47.873 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 Pfam PF00753 Metallo-beta-lactamase superfamily 20 167 3.1E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 364 392 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 PIRSF PIRSF004803 1 555 2.4E-247 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 360 407 1.1E-7 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 10 553 6.0E-237 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 SUPERFAMILY SSF56281 11 423 5.82E-95 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 SMART SM00849 21 215 8.2E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_15930 8652c9e185ed74ac9e6dc63885ace091 555 Gene3D G3DSA:3.60.15.10 12 442 1.5E-194 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_17875 85c326e721b980a7eca980b0c63584dd 166 Gene3D G3DSA:1.20.120.450 1 163 9.5E-43 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_17875 85c326e721b980a7eca980b0c63584dd 166 SUPERFAMILY SSF109854 1 155 1.04E-25 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_17875 85c326e721b980a7eca980b0c63584dd 166 Pfam PF05163 DinB family 2 162 4.1E-36 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB RA13_09775 67bf163c793c5894f8efe9101fc76093 145 Gene3D G3DSA:3.30.1490.190 87 143 3.5E-15 T 13-10-2018 RA13_09775 67bf163c793c5894f8efe9101fc76093 145 SUPERFAMILY SSF46785 5 133 3.99E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_09775 67bf163c793c5894f8efe9101fc76093 145 Pfam PF01475 Ferric uptake regulator family 12 129 1.6E-29 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RA13_09775 67bf163c793c5894f8efe9101fc76093 145 Gene3D G3DSA:1.10.10.10 1 83 9.9E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07085 611cf7574e542130c836c71f383fb129 516 Gene3D G3DSA:3.30.479.30 77 193 4.2E-38 T 13-10-2018 RA13_07085 611cf7574e542130c836c71f383fb129 516 Pfam PF01145 SPFH domain / Band 7 family 30 219 6.5E-25 T 13-10-2018 IPR001107 Band 7 domain RA13_07085 611cf7574e542130c836c71f383fb129 516 SMART SM00244 119 301 9.6E-15 T 13-10-2018 IPR001107 Band 7 domain RA13_07085 611cf7574e542130c836c71f383fb129 516 SUPERFAMILY SSF117892 68 210 1.7E-34 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RA13_07085 611cf7574e542130c836c71f383fb129 516 Pfam PF15975 Flotillin 368 463 1.9E-15 T 13-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 PIRSF PIRSF000478 1 433 8.3E-173 T 13-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 Pfam PF02885 Glycosyl transferase family, helical bundle domain 4 66 1.2E-21 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 SUPERFAMILY SSF52418 69 329 8.5E-93 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 SMART SM00941 345 418 2.4E-32 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 3 417 8.9E-184 T 13-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 345 418 1.9E-28 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 SUPERFAMILY SSF54680 331 431 3.14E-29 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 Pfam PF00591 Glycosyl transferase family, a/b domain 78 306 4.2E-50 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 Gene3D G3DSA:1.20.970.10 1 68 6.3E-30 T 13-10-2018 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 Gene3D G3DSA:3.40.1030.10 69 335 1.5E-118 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 13-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 Gene3D G3DSA:3.90.1170.30 336 423 3.5E-35 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_02710 611464e87fe0e71a4ac8dbe4da8d4a84 433 SUPERFAMILY SSF47648 1 69 3.92E-22 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_18510 e4d403978ce97f9c453df05f7a425960 243 Gene3D G3DSA:3.20.20.190 1 242 1.7E-80 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_18510 e4d403978ce97f9c453df05f7a425960 243 SUPERFAMILY SSF51695 3 235 2.88E-73 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_18510 e4d403978ce97f9c453df05f7a425960 243 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 232 3.8E-48 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RA13_20115 ac2bfc6509af586d1ec2f3fa641cc79a 416 Pfam PF13520 Amino acid permease 8 402 1.1E-38 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_20115 ac2bfc6509af586d1ec2f3fa641cc79a 416 Gene3D G3DSA:1.20.1740.10 1 415 8.5E-71 T 13-10-2018 RA13_20115 ac2bfc6509af586d1ec2f3fa641cc79a 416 PIRSF PIRSF006060 1 412 4.8E-65 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_04355 45446e708c07f42300ee57adf72a2cf1 536 Pfam PF04434 SWIM zinc finger 66 98 1.8E-5 T 13-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00941 Cadmium-transporting ATPase signature 19 40 3.9E-14 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00941 Cadmium-transporting ATPase signature 183 203 3.9E-14 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00941 Cadmium-transporting ATPase signature 283 297 3.9E-14 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00941 Cadmium-transporting ATPase signature 8 17 3.9E-14 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00941 Cadmium-transporting ATPase signature 264 280 3.9E-14 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 150 696 2.0E-169 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 Pfam PF00403 Heavy-metal-associated domain 8 66 1.7E-10 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 149 699 5.6E-158 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 Pfam PF00122 E1-E2 ATPase 200 379 2.1E-46 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 SUPERFAMILY SSF81653 201 298 9.29E-22 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 Gene3D G3DSA:3.30.70.100 5 88 1.1E-10 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 402 408 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 SUPERFAMILY SSF56784 400 695 5.67E-58 T 13-10-2018 IPR036412 HAD-like superfamily RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 Gene3D G3DSA:3.40.1110.10 411 522 3.9E-79 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 Gene3D G3DSA:2.70.150.20 186 302 4.5E-30 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 SUPERFAMILY SSF81665 140 692 2.35E-12 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 171 674 1.1E-75 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 Pfam PF00702 haloacid dehalogenase-like hydrolase 396 608 4.2E-34 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 SUPERFAMILY SSF55008 5 73 2.62E-11 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 ProSitePatterns PS01047 Heavy-metal-associated domain. 10 39 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 Gene3D G3DSA:3.40.50.1000 381 647 3.9E-79 T 13-10-2018 IPR023214 HAD superfamily RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 538 548 3.6E-22 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 594 613 3.6E-22 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 400 414 3.6E-22 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 618 630 3.6E-22 T 13-10-2018 RA13_05670 b4435e3bcd2db2bf39cb9df9c36c39a1 703 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 248 262 3.6E-22 T 13-10-2018 RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.9E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 PIRSF PIRSF002599 1 67 6.1E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 SUPERFAMILY SSF50249 1 64 3.77E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 PRINTS PR00050 Cold shock protein signature 39 57 2.6E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 PRINTS PR00050 Cold shock protein signature 24 33 2.6E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 PRINTS PR00050 Cold shock protein signature 4 19 2.6E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 Gene3D G3DSA:2.40.50.140 1 67 3.8E-30 T 13-10-2018 RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site RA13_20795 b141006af4b97d4188a10fc768ea06e6 67 SMART SM00357 3 66 2.4E-32 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RA13_04645 e640ad0404a766462e9739f3e09d03b5 316 Gene3D G3DSA:2.60.120.10 228 316 3.6E-32 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_04645 e640ad0404a766462e9739f3e09d03b5 316 Gene3D G3DSA:2.60.120.10 1 227 1.9E-89 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_04645 e640ad0404a766462e9739f3e09d03b5 316 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 103 315 4.1E-59 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RA13_04645 e640ad0404a766462e9739f3e09d03b5 316 PIRSF PIRSF036894 3 316 2.5E-124 T 13-10-2018 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form GO:0004476|GO:0005975 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 RA13_04645 e640ad0404a766462e9739f3e09d03b5 316 Pfam PF01238 Phosphomannose isomerase type I 7 315 4.7E-63 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 RA13_04645 e640ad0404a766462e9739f3e09d03b5 316 SUPERFAMILY SSF51182 3 315 3.22E-101 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_01505 93db601afea5337aba890e94e7e61ad0 292 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 20 288 56.355 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RA13_01505 93db601afea5337aba890e94e7e61ad0 292 SMART SM00650 36 212 4.0E-88 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RA13_01505 93db601afea5337aba890e94e7e61ad0 292 SUPERFAMILY SSF53335 16 290 6.33E-74 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_01505 93db601afea5337aba890e94e7e61ad0 292 Pfam PF00398 Ribosomal RNA adenine dimethylase 20 280 5.9E-85 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RA13_01505 93db601afea5337aba890e94e7e61ad0 292 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 20 286 5.9E-89 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RA13_01505 93db601afea5337aba890e94e7e61ad0 292 Gene3D G3DSA:1.10.8.100 220 291 1.1E-19 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 RA13_01505 93db601afea5337aba890e94e7e61ad0 292 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 52 79 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RA13_01505 93db601afea5337aba890e94e7e61ad0 292 Gene3D G3DSA:3.40.50.150 2 216 1.2E-74 T 13-10-2018 RA13_17820 a6e40d9d276803a50ca03e5f9e1a9f3b 203 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 6 187 6.4E-33 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_06170 a63ef5f7936a03d61a9ce21a632d6311 346 SUPERFAMILY SSF47648 5 69 1.44E-15 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_06170 a63ef5f7936a03d61a9ce21a632d6311 346 SUPERFAMILY SSF52418 81 342 7.98E-46 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_06170 a63ef5f7936a03d61a9ce21a632d6311 346 Gene3D G3DSA:1.20.970.10 1 68 7.8E-21 T 13-10-2018 RA13_06170 a63ef5f7936a03d61a9ce21a632d6311 346 Pfam PF00591 Glycosyl transferase family, a/b domain 130 330 1.7E-27 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_06170 a63ef5f7936a03d61a9ce21a632d6311 346 Gene3D G3DSA:3.40.1030.10 76 345 5.0E-55 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_06170 a63ef5f7936a03d61a9ce21a632d6311 346 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 66 4.6E-14 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_11895 0e5142640c565cf87d9379bbc720a4dc 382 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 76 134 2.4E-7 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RA13_11895 0e5142640c565cf87d9379bbc720a4dc 382 Gene3D G3DSA:1.10.150.130 71 179 1.1E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RA13_11895 0e5142640c565cf87d9379bbc720a4dc 382 Pfam PF00589 Phage integrase family 184 366 2.7E-24 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RA13_11895 0e5142640c565cf87d9379bbc720a4dc 382 SUPERFAMILY SSF56349 75 371 1.14E-56 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RA13_11895 0e5142640c565cf87d9379bbc720a4dc 382 Gene3D G3DSA:1.10.443.10 180 378 2.1E-44 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RA13_11895 0e5142640c565cf87d9379bbc720a4dc 382 Pfam PF14657 Arm DNA-binding domain 23 65 1.2E-10 T 13-10-2018 IPR028259 AP2-like integrase, N-terminal domain RA13_11950 fa08463058148b3afcef756079b64bf4 442 SUPERFAMILY SSF48024 6 111 8.89E-20 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RA13_11950 fa08463058148b3afcef756079b64bf4 442 Pfam PF00772 DnaB-like helicase N terminal domain 8 103 1.5E-18 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RA13_11950 fa08463058148b3afcef756079b64bf4 442 SUPERFAMILY SSF52540 171 434 3.77E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11950 fa08463058148b3afcef756079b64bf4 442 Gene3D G3DSA:3.40.50.300 149 441 7.4E-105 T 13-10-2018 RA13_11950 fa08463058148b3afcef756079b64bf4 442 Gene3D G3DSA:1.10.860.10 1 144 1.6E-39 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RA13_11950 fa08463058148b3afcef756079b64bf4 442 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 8 437 3.6E-135 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RA13_11950 fa08463058148b3afcef756079b64bf4 442 SMART SM00382 190 386 0.005 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_11950 fa08463058148b3afcef756079b64bf4 442 Pfam PF03796 DnaB-like helicase C terminal domain 173 435 2.4E-101 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RA13_17040 9cc5b933a81eabe5101b30b8be1da203 278 Pfam PF01047 MarR family 55 92 1.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_17040 9cc5b933a81eabe5101b30b8be1da203 278 SUPERFAMILY SSF46785 53 92 7.52E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_17040 9cc5b933a81eabe5101b30b8be1da203 278 Gene3D G3DSA:1.10.10.10 51 158 2.5E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16700 547a720a48d5ae8439de754c246bc05b 365 Hamap MF_00456 Glutamate 5-kinase [proB]. 4 258 36.69 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 SMART SM00359 277 355 6.8E-17 T 13-10-2018 IPR002478 PUA domain GO:0003723 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 Gene3D G3DSA:2.30.130.10 266 362 6.6E-25 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 Gene3D G3DSA:3.40.1160.10 1 260 5.1E-82 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_16700 547a720a48d5ae8439de754c246bc05b 365 ProSitePatterns PS00902 Glutamate 5-kinase signature. 206 223 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 SUPERFAMILY SSF53633 4 254 1.31E-67 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_16700 547a720a48d5ae8439de754c246bc05b 365 PRINTS PR00474 Glutamate 5-kinase family signature 41 55 6.8E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 PRINTS PR00474 Glutamate 5-kinase family signature 147 174 6.8E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 PRINTS PR00474 Glutamate 5-kinase family signature 115 136 6.8E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 PRINTS PR00474 Glutamate 5-kinase family signature 75 103 6.8E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 PRINTS PR00474 Glutamate 5-kinase family signature 208 228 6.8E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 SUPERFAMILY SSF88697 277 362 8.29E-18 T 13-10-2018 IPR015947 PUA-like superfamily RA13_16700 547a720a48d5ae8439de754c246bc05b 365 Pfam PF01472 PUA domain 277 346 3.3E-18 T 13-10-2018 IPR002478 PUA domain GO:0003723 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 PIRSF PIRSF000729 1 364 2.7E-133 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 Pfam PF00696 Amino acid kinase family 4 232 3.7E-45 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RA13_16700 547a720a48d5ae8439de754c246bc05b 365 TIGRFAM TIGR01027 proB: glutamate 5-kinase 4 361 3.0E-144 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_10890 f8dc5ca71d96d8658f048acfb618796f 192 PIRSF PIRSF037778 1 186 3.6E-46 T 13-10-2018 IPR025720 ECF transporter, Riboflavin transporter RibU GO:0005886|GO:0032217|GO:0032218 RA13_10890 f8dc5ca71d96d8658f048acfb618796f 192 Gene3D G3DSA:1.10.1760.20 1 189 5.3E-51 T 13-10-2018 RA13_10890 f8dc5ca71d96d8658f048acfb618796f 192 Pfam PF12822 ECF transporter, substrate-specific component 4 173 1.6E-23 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 5 314 6.2E-138 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 PIRSF PIRSF001604 1 668 5.9E-262 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 403 429 3.6E-11 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Gene3D G3DSA:1.10.150.20 500 578 1.2E-25 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SUPERFAMILY SSF56091 2 312 9.76E-124 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 318 394 3.3E-33 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Gene3D G3DSA:2.40.50.140 314 386 2.1E-29 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Pfam PF14520 Helix-hairpin-helix domain 443 497 0.0014 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Gene3D G3DSA:1.10.150.20 427 499 2.3E-30 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 593 663 3.8E-13 T 13-10-2018 IPR001357 BRCT domain RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Gene3D G3DSA:1.10.287.610 1 72 1.1E-28 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SMART SM00278 539 558 1.7 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SMART SM00278 475 494 190.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SMART SM00278 441 460 240.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Hamap MF_01588 DNA ligase [ligA]. 4 666 53.988 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SMART SM00292 592 668 7.8E-12 T 13-10-2018 IPR001357 BRCT domain RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Gene3D G3DSA:3.30.470.90 73 313 2.7E-103 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 662 3.4E-285 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 327 342 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Gene3D G3DSA:3.40.50.10190 579 667 9.3E-26 T 13-10-2018 IPR036420 BRCT domain superfamily RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SUPERFAMILY SSF52113 589 666 1.53E-19 T 13-10-2018 IPR036420 BRCT domain superfamily RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Pfam PF12826 Helix-hairpin-helix motif 505 567 2.9E-24 T 13-10-2018 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SUPERFAMILY SSF50249 313 396 8.39E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SUPERFAMILY SSF47781 400 579 2.41E-64 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 SMART SM00532 5 443 9.7E-294 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RA13_20075 b88d22fe93f2d29fcdc4911a864d1b80 668 Gene3D G3DSA:2.20.70.80 387 424 2.0E-12 T 13-10-2018 RA13_07865 05c3635c072c0e24557924c676ae4470 203 Gene3D G3DSA:3.40.50.1820 1 200 7.5E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_07865 05c3635c072c0e24557924c676ae4470 203 Pfam PF01738 Dienelactone hydrolase family 80 185 3.0E-8 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RA13_07865 05c3635c072c0e24557924c676ae4470 203 SUPERFAMILY SSF53474 2 199 2.11E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_20105 b6fc6be0519ef7e19133fea3cde8a825 580 SUPERFAMILY SSF51338 20 356 1.7E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_20105 b6fc6be0519ef7e19133fea3cde8a825 580 Gene3D G3DSA:3.20.20.140 82 325 2.3E-80 T 13-10-2018 RA13_20105 b6fc6be0519ef7e19133fea3cde8a825 580 Pfam PF01979 Amidohydrolase family 78 361 3.0E-23 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RA13_20105 b6fc6be0519ef7e19133fea3cde8a825 580 Pfam PF13382 Adenine deaminase C-terminal domain 419 571 9.2E-36 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RA13_20105 b6fc6be0519ef7e19133fea3cde8a825 580 SUPERFAMILY SSF51556 82 328 3.7E-10 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_20105 b6fc6be0519ef7e19133fea3cde8a825 580 Gene3D G3DSA:2.30.40.10 27 360 2.3E-80 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_12135 216d0da3eb87f0ba07dc03e82a1e86f9 272 Pfam PF12978 Domain of Unknown Function with PDB structure (DUF3862) 51 133 7.6E-7 T 13-10-2018 IPR024418 Protein of unknown function DUF3862 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 2 327 7.3E-137 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 Gene3D G3DSA:3.30.420.40 6 319 3.5E-127 T 13-10-2018 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 Gene3D G3DSA:3.90.640.10 178 251 3.5E-127 T 13-10-2018 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 Pfam PF06723 MreB/Mbl protein 4 327 5.3E-150 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 SUPERFAMILY SSF53067 3 140 4.61E-39 T 13-10-2018 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 SUPERFAMILY SSF53067 143 325 1.89E-49 T 13-10-2018 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 124 143 5.8E-59 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 41 59 5.8E-59 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 61 84 5.8E-59 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 179 199 5.8E-59 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 292 318 5.8E-59 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_04295 ab06b569703362700a7b34eb88f4de4c 333 Gene3D G3DSA:3.30.420.40 146 309 3.5E-127 T 13-10-2018 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 ProSitePatterns PS00483 Dihydroorotase signature 2. 302 313 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 ProSitePatterns PS00482 Dihydroorotase signature 1. 57 65 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 Gene3D G3DSA:2.30.40.10 7 419 4.7E-152 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 Hamap MF_00220_B Dihydroorotase [pyrC]. 3 423 45.095 T 13-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 SUPERFAMILY SSF51556 54 367 5.22E-110 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 SUPERFAMILY SSF51338 1 427 4.61E-28 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 Pfam PF01979 Amidohydrolase family 50 419 6.4E-61 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 Gene3D G3DSA:3.20.20.140 54 366 4.7E-152 T 13-10-2018 RA13_15430 216b393f621e99f9f2725e2bd368a3b6 428 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 15 424 4.5E-167 T 13-10-2018 RA13_07055 d59a3c2fee252ff49372c3101deada48 185 Gene3D G3DSA:1.10.10.10 8 91 3.8E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07055 d59a3c2fee252ff49372c3101deada48 185 SUPERFAMILY SSF46785 9 159 1.71E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_07055 d59a3c2fee252ff49372c3101deada48 185 PIRSF PIRSF006707 1 183 7.9E-56 T 13-10-2018 IPR026282 DNA-binding protein, MJ1563 type RA13_05075 afd781fc3372e1f681372eecd5917934 252 Gene3D G3DSA:3.20.20.70 1 252 1.1E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_05075 afd781fc3372e1f681372eecd5917934 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 252 47.892 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RA13_05075 afd781fc3372e1f681372eecd5917934 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 252 2.6E-121 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RA13_05075 afd781fc3372e1f681372eecd5917934 252 Pfam PF00977 Histidine biosynthesis protein 5 235 4.3E-85 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RA13_05075 afd781fc3372e1f681372eecd5917934 252 SUPERFAMILY SSF51366 1 252 4.47E-79 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_04670 429dcfc3e597899dc2c4982b9e158a92 512 Pfam PF00535 Glycosyl transferase family 2 39 175 1.7E-28 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_04670 429dcfc3e597899dc2c4982b9e158a92 512 Gene3D G3DSA:3.90.550.10 2 293 3.0E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04670 429dcfc3e597899dc2c4982b9e158a92 512 SUPERFAMILY SSF53448 36 257 2.53E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_07645 8f7ce32ab495b8d6901ef2fd049ce05a 429 SUPERFAMILY SSF55347 134 351 5.23E-31 T 13-10-2018 RA13_07645 8f7ce32ab495b8d6901ef2fd049ce05a 429 Gene3D G3DSA:3.40.50.720 3 131 9.2E-20 T 13-10-2018 RA13_07645 8f7ce32ab495b8d6901ef2fd049ce05a 429 SUPERFAMILY SSF51735 3 160 5.17E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_07645 8f7ce32ab495b8d6901ef2fd049ce05a 429 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 129 5.1E-22 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RA13_07645 8f7ce32ab495b8d6901ef2fd049ce05a 429 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 141 275 2.9E-25 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RA13_05445 964f354a0f80ae35c8a62a46e605592f 345 SUPERFAMILY SSF46785 19 81 6.5E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05445 964f354a0f80ae35c8a62a46e605592f 345 Gene3D G3DSA:1.10.10.10 19 89 7.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05445 964f354a0f80ae35c8a62a46e605592f 345 Gene3D G3DSA:3.40.50.1360 90 339 2.3E-88 T 13-10-2018 RA13_05445 964f354a0f80ae35c8a62a46e605592f 345 Pfam PF04198 Putative sugar-binding domain 91 337 8.2E-75 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 RA13_05445 964f354a0f80ae35c8a62a46e605592f 345 SUPERFAMILY SSF100950 90 337 8.97E-66 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_14660 f2e325d158dde2aaba967c52c8a34456 143 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 9 113 1.1E-20 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA RA13_14660 f2e325d158dde2aaba967c52c8a34456 143 PIRSF PIRSF021287 1 123 2.0E-51 T 13-10-2018 IPR016783 Biofilm formation YmcA RA13_14660 f2e325d158dde2aaba967c52c8a34456 143 Gene3D G3DSA:1.20.1500.10 1 124 1.1E-35 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily RA13_14660 f2e325d158dde2aaba967c52c8a34456 143 SUPERFAMILY SSF158622 4 123 5.36E-33 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily RA13_06320 86269dd492fcbfbd1d3dbd61898d5e49 326 Pfam PF01551 Peptidase family M23 203 301 9.7E-21 T 13-10-2018 IPR016047 Peptidase M23 RA13_06320 86269dd492fcbfbd1d3dbd61898d5e49 326 SUPERFAMILY SSF51261 117 314 1.41E-34 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_06320 86269dd492fcbfbd1d3dbd61898d5e49 326 Gene3D G3DSA:2.70.70.10 118 325 1.1E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Gene3D G3DSA:3.90.780.10 423 610 2.4E-59 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 SUPERFAMILY SSF55816 375 611 1.01E-46 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 1414 1446 0.0016 T 13-10-2018 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 ProSitePatterns PS00785 5'-nucleotidase signature 1. 669 681 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 SUPERFAMILY SSF55816 975 1175 2.22E-60 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Gene3D G3DSA:3.60.21.10 35 374 2.0E-145 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Pfam PF00149 Calcineurin-like phosphoesterase 46 284 2.1E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Pfam PF00149 Calcineurin-like phosphoesterase 669 898 9.2E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Gene3D G3DSA:3.90.780.10 977 1175 3.8E-70 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 ProSitePatterns PS00786 5'-nucleotidase signature 2. 134 145 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 PRINTS PR01607 Apyrase family signature 1035 1058 4.4E-41 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 PRINTS PR01607 Apyrase family signature 912 932 4.4E-41 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 PRINTS PR01607 Apyrase family signature 667 685 4.4E-41 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 PRINTS PR01607 Apyrase family signature 1113 1132 4.4E-41 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 PRINTS PR01607 Apyrase family signature 881 904 4.4E-41 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 PRINTS PR01607 Apyrase family signature 862 879 4.4E-41 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Gene3D G3DSA:3.60.21.10 667 976 2.6E-91 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Pfam PF02872 5'-nucleotidase, C-terminal domain 977 1139 4.1E-47 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 Pfam PF02872 5'-nucleotidase, C-terminal domain 375 573 1.0E-24 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 SUPERFAMILY SSF56300 40 373 1.74E-85 T 13-10-2018 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 SUPERFAMILY SSF56300 663 975 9.11E-79 T 13-10-2018 RA13_19515 fe99737806aa4f85688e1a05796313f5 1452 ProSitePatterns PS00785 5'-nucleotidase signature 1. 45 57 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 RA13_05890 09c51987565c3415266c317f6d578d50 225 Pfam PF04012 PspA/IM30 family 1 220 3.6E-60 T 13-10-2018 IPR007157 PspA/IM30 RA13_04195 fdeb4d6893773170d9937ad2e675a08c 252 SUPERFAMILY SSF53448 2 210 2.28E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04195 fdeb4d6893773170d9937ad2e675a08c 252 Gene3D G3DSA:3.90.550.10 2 211 8.7E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04195 fdeb4d6893773170d9937ad2e675a08c 252 Pfam PF02348 Cytidylyltransferase 5 209 7.3E-29 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 RA13_16025 bd8db7a888dfe9824d0e1ca38d0cb060 228 Pfam PF04893 Yip1 domain 21 213 2.9E-25 T 13-10-2018 IPR006977 Yip1 domain GO:0016020 RA13_21170 2e85c5a63a33de305693a57dfe95345b 284 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 41 279 2.0E-66 T 13-10-2018 RA13_21170 2e85c5a63a33de305693a57dfe95345b 284 Pfam PF12787 EcsC protein family 25 276 1.1E-84 T 13-10-2018 IPR024787 EcsC protein RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00690 Adhesin family signature 209 230 2.8E-17 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00690 Adhesin family signature 39 57 2.8E-17 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00690 Adhesin family signature 83 100 2.8E-17 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00690 Adhesin family signature 262 280 2.8E-17 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00690 Adhesin family signature 70 83 2.8E-17 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00691 Adhesin B signature 64 82 3.5E-16 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00691 Adhesin B signature 83 102 3.5E-16 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00691 Adhesin B signature 209 226 3.5E-16 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00691 Adhesin B signature 258 275 3.5E-16 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00691 Adhesin B signature 302 320 3.5E-16 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 PRINTS PR00691 Adhesin B signature 39 60 3.5E-16 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 Gene3D G3DSA:3.40.50.1980 212 326 4.5E-44 T 13-10-2018 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 SUPERFAMILY SSF53807 16 323 4.32E-87 T 13-10-2018 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 Pfam PF01297 Zinc-uptake complex component A periplasmic 42 321 2.9E-80 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RA13_00100 f390d85636f0d492adf46ea4b814a5e4 326 Gene3D G3DSA:3.40.50.1980 39 211 5.0E-67 T 13-10-2018 RA13_21165 e2a1a7edcf8dba23e7e6f7202c12fc44 104 Pfam PF00477 Small hydrophilic plant seed protein 11 63 1.2E-6 T 13-10-2018 IPR038956 Late embryogenesis abundant protein, LEA_5 subgroup RA13_21165 e2a1a7edcf8dba23e7e6f7202c12fc44 104 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 83 97 1.6E-5 T 13-10-2018 IPR019626 Stress-induced protein, KGG, repeat RA13_07345 5495cc87739f0fe0461dfefb1f45ec92 232 SUPERFAMILY SSF49590 136 212 2.09E-13 T 13-10-2018 IPR036749 Expansin, cellulose-binding-like domain superfamily RA13_07345 5495cc87739f0fe0461dfefb1f45ec92 232 SUPERFAMILY SSF50685 14 136 9.07E-19 T 13-10-2018 IPR036908 RlpA-like domain superfamily RA13_07345 5495cc87739f0fe0461dfefb1f45ec92 232 Gene3D G3DSA:2.40.40.10 25 132 4.8E-28 T 13-10-2018 IPR036908 RlpA-like domain superfamily RA13_07345 5495cc87739f0fe0461dfefb1f45ec92 232 Gene3D G3DSA:2.60.40.760 133 226 2.8E-34 T 13-10-2018 IPR036749 Expansin, cellulose-binding-like domain superfamily RA13_07345 5495cc87739f0fe0461dfefb1f45ec92 232 Pfam PF03330 Lytic transglycolase 77 127 6.2E-7 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain RA13_10715 77b2b423bc1c1871aabf237e9e6cc521 447 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 229 429 4.0E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_10715 77b2b423bc1c1871aabf237e9e6cc521 447 SUPERFAMILY SSF160964 140 197 6.02E-9 T 13-10-2018 RA13_10715 77b2b423bc1c1871aabf237e9e6cc521 447 Gene3D G3DSA:1.10.3720.10 189 446 1.8E-70 T 13-10-2018 IPR035906 MetI-like superfamily RA13_10715 77b2b423bc1c1871aabf237e9e6cc521 447 SUPERFAMILY SSF161098 195 430 2.62E-59 T 13-10-2018 IPR035906 MetI-like superfamily RA13_01340 c49993475ab86c3d04331b976b6bd923 308 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 293 8.8E-73 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RA13_01340 c49993475ab86c3d04331b976b6bd923 308 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 305 3.7E-138 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RA13_01340 c49993475ab86c3d04331b976b6bd923 308 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RA13_01340 c49993475ab86c3d04331b976b6bd923 308 Gene3D G3DSA:3.40.50.1100 46 144 4.0E-125 T 13-10-2018 RA13_01340 c49993475ab86c3d04331b976b6bd923 308 SUPERFAMILY SSF53686 3 306 6.55E-107 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RA13_01340 c49993475ab86c3d04331b976b6bd923 308 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 305 1.9E-147 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RA13_01340 c49993475ab86c3d04331b976b6bd923 308 Gene3D G3DSA:3.40.50.1100 7 301 4.0E-125 T 13-10-2018 RA13_06080 39b50b80f4c450fb4f17fe7dd46530e6 272 PIRSF PIRSF002854 1 272 8.7E-92 T 13-10-2018 IPR004872 Lipoprotein NlpA family RA13_06080 39b50b80f4c450fb4f17fe7dd46530e6 272 SUPERFAMILY SSF53850 30 270 1.09E-76 T 13-10-2018 RA13_06080 39b50b80f4c450fb4f17fe7dd46530e6 272 Gene3D G3DSA:3.40.190.10 113 220 2.2E-97 T 13-10-2018 RA13_06080 39b50b80f4c450fb4f17fe7dd46530e6 272 Gene3D G3DSA:3.40.190.10 33 269 2.2E-97 T 13-10-2018 RA13_06080 39b50b80f4c450fb4f17fe7dd46530e6 272 Pfam PF03180 NLPA lipoprotein 31 270 5.1E-87 T 13-10-2018 IPR004872 Lipoprotein NlpA family RA13_10930 855a41686521136b28f95b1bf748b3d2 194 PIRSF PIRSF029008 1 194 1.7E-63 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA RA13_10930 855a41686521136b28f95b1bf748b3d2 194 Pfam PF05389 Negative regulator of genetic competence (MecA) 96 189 2.8E-14 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA RA13_10930 855a41686521136b28f95b1bf748b3d2 194 Pfam PF05389 Negative regulator of genetic competence (MecA) 1 89 2.1E-25 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA RA13_10930 855a41686521136b28f95b1bf748b3d2 194 Gene3D G3DSA:3.30.70.1950 104 194 6.0E-33 T 13-10-2018 IPR038471 MecA, C-terminal domain superfamily RA13_10930 855a41686521136b28f95b1bf748b3d2 194 Hamap MF_01124 Adapter protein MecA [mecA]. 1 193 24.684 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 SUPERFAMILY SSF51735 2 248 1.69E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 247 6.0E-47 T 13-10-2018 RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 Gene3D G3DSA:3.40.50.720 1 255 1.9E-64 T 13-10-2018 RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.5E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.5E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 8.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 8.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 8.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 8.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 8.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08040 c68b6250c4a78c0f0184f32a64db073a 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 8.8E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 SUPERFAMILY SSF56235 2 234 8.49E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 SUPERFAMILY SSF53697 244 600 3.43E-97 T 13-10-2018 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 Gene3D G3DSA:3.40.50.10490 444 600 7.5E-62 T 13-10-2018 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 Gene3D G3DSA:3.40.50.10490 243 442 6.3E-62 T 13-10-2018 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 Pfam PF13522 Glutamine amidotransferase domain 61 191 9.1E-21 T 13-10-2018 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 600 38.913 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 Pfam PF01380 SIS domain 288 413 3.7E-35 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 Pfam PF01380 SIS domain 457 582 4.5E-22 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 600 6.0E-232 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RA13_00650 dadd537d2a5a82c130d0aa9f7b579fc7 600 Gene3D G3DSA:3.60.20.10 2 239 3.1E-70 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_07730 aee57978f8f2aacdf32e7acea091425c 213 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 1 212 28.693 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RA13_07730 aee57978f8f2aacdf32e7acea091425c 213 Gene3D G3DSA:3.40.50.150 1 213 9.2E-71 T 13-10-2018 RA13_07730 aee57978f8f2aacdf32e7acea091425c 213 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 25 212 4.7E-68 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RA13_07730 aee57978f8f2aacdf32e7acea091425c 213 SUPERFAMILY SSF53335 26 208 2.99E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_07730 aee57978f8f2aacdf32e7acea091425c 213 Pfam PF02390 Putative methyltransferase 39 207 1.3E-50 T 13-10-2018 RA13_01000 3a9d7999f1ea24816889b847161d24b6 122 Gene3D G3DSA:2.40.150.20 1 122 3.1E-53 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_01000 3a9d7999f1ea24816889b847161d24b6 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 4.9E-58 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RA13_01000 3a9d7999f1ea24816889b847161d24b6 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 25.697 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RA13_01000 3a9d7999f1ea24816889b847161d24b6 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01000 3a9d7999f1ea24816889b847161d24b6 122 SMART SM01374 1 122 1.1E-84 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RA13_01000 3a9d7999f1ea24816889b847161d24b6 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.9E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RA13_01000 3a9d7999f1ea24816889b847161d24b6 122 SUPERFAMILY SSF50193 1 122 2.62E-50 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_21320 479152b9b375b9579046479fe7d3db51 663 Gene3D G3DSA:3.40.710.10 330 663 5.4E-86 T 13-10-2018 RA13_21320 479152b9b375b9579046479fe7d3db51 663 Gene3D G3DSA:3.90.1310.10 152 326 1.1E-49 T 13-10-2018 RA13_21320 479152b9b375b9579046479fe7d3db51 663 SUPERFAMILY SSF56601 331 661 1.88E-78 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_21320 479152b9b375b9579046479fe7d3db51 663 SUPERFAMILY SSF54427 24 142 4.12E-29 T 13-10-2018 IPR032710 NTF2-like domain superfamily RA13_21320 479152b9b375b9579046479fe7d3db51 663 SUPERFAMILY SSF56519 145 330 6.93E-38 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RA13_21320 479152b9b375b9579046479fe7d3db51 663 Pfam PF00905 Penicillin binding protein transpeptidase domain 348 658 1.1E-73 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_21320 479152b9b375b9579046479fe7d3db51 663 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 22 143 2.4E-33 T 13-10-2018 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 RA13_21320 479152b9b375b9579046479fe7d3db51 663 Gene3D G3DSA:3.30.1390.30 172 245 1.1E-49 T 13-10-2018 RA13_21320 479152b9b375b9579046479fe7d3db51 663 Pfam PF03717 Penicillin-binding Protein dimerisation domain 151 318 6.2E-35 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RA13_21320 479152b9b375b9579046479fe7d3db51 663 Gene3D G3DSA:3.10.450.100 20 138 4.2E-20 T 13-10-2018 RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.1E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 Gene3D G3DSA:3.40.50.720 1 253 5.3E-81 T 13-10-2018 RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 SUPERFAMILY SSF51735 2 249 1.69E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 5.9E-57 T 13-10-2018 RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_16160 8c4d2ff6ea413cc82e0f38e8d6d63ae4 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.1E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 SUPERFAMILY SSF55347 152 314 3.27E-71 T 13-10-2018 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 PIRSF PIRSF000149 1 335 5.8E-140 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 4.9E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 4.9E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 4.9E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 4.9E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 4.9E-41 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 SUPERFAMILY SSF51735 1 178 1.81E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 2.0E-68 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 SMART SM00846 3 152 3.2E-86 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 8.7E-39 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 3.1E-135 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 Gene3D G3DSA:3.30.360.10 151 315 1.7E-151 T 13-10-2018 RA13_08185 b53b7f5d3ef654c42717185cd0dda41b 340 Gene3D G3DSA:3.40.50.720 4 328 1.7E-151 T 13-10-2018 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 505 628 1.3E-40 T 13-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 502 643 5.4E-35 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 SUPERFAMILY SSF55804 496 643 1.7E-38 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 95 5.8E-17 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 SUPERFAMILY SSF52794 2 103 4.53E-37 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 Pfam PF02378 Phosphotransferase system, EIIC 128 403 2.6E-22 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 546 562 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 112 458 6.8E-96 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 Gene3D G3DSA:3.40.930.10 492 644 6.5E-42 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 5 86 2.1E-30 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RA13_20665 8533a100aa00721540a3a3a67b9c0939 645 Gene3D G3DSA:3.40.50.2300 1 104 6.6E-42 T 13-10-2018 RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 7.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 SMART SM00866 92 230 2.2E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 5.7E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 5.7E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 SUPERFAMILY SSF46785 5 79 1.48E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 SUPERFAMILY SSF64288 58 236 1.88E-44 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 Gene3D G3DSA:1.10.10.10 6 73 5.5E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 SMART SM00345 11 70 5.8E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 Pfam PF07702 UTRA domain 92 229 4.4E-34 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_08850 565c916c51d6cd7757a6906d01c74fe9 244 Gene3D G3DSA:3.40.1410.10 74 237 4.1E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 SUPERFAMILY SSF47203 257 422 2.09E-42 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 Gene3D G3DSA:1.10.540.10 2 144 1.6E-40 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 Gene3D G3DSA:1.20.140.10 423 594 3.1E-50 T 13-10-2018 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 149 161 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 SUPERFAMILY SSF56645 21 263 1.3E-71 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 147 239 8.5E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 Gene3D G3DSA:1.20.140.10 252 422 1.8E-49 T 13-10-2018 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 378 397 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 Gene3D G3DSA:2.40.110.10 146 251 2.1E-35 T 13-10-2018 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 31 142 7.4E-27 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RA13_06035 6d87994d1a8dbe005f74a3caed1aea36 594 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 253 415 2.7E-33 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RA13_21020 0f945608529db132d47fc00cd5493d0b 272 Gene3D G3DSA:1.10.490.10 1 134 4.2E-47 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RA13_21020 0f945608529db132d47fc00cd5493d0b 272 Pfam PF08678 Rsbr N terminal 10 134 6.9E-37 T 13-10-2018 IPR014792 RsbS co-antagonist protein RsbRA N-terminal domain RA13_21020 0f945608529db132d47fc00cd5493d0b 272 SUPERFAMILY SSF52091 148 244 7.85E-16 T 13-10-2018 IPR036513 STAS domain superfamily RA13_21020 0f945608529db132d47fc00cd5493d0b 272 Pfam PF01740 STAS domain 154 253 3.1E-14 T 13-10-2018 IPR002645 STAS domain RA13_21020 0f945608529db132d47fc00cd5493d0b 272 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 9 133 4.0E-49 T 13-10-2018 RA13_21020 0f945608529db132d47fc00cd5493d0b 272 Gene3D G3DSA:3.30.750.24 146 266 2.1E-38 T 13-10-2018 IPR036513 STAS domain superfamily RA13_20605 1acb8a731e50454a6e91fbfab191293c 156 Pfam PF12867 DinB superfamily 11 140 6.6E-14 T 13-10-2018 IPR024775 DinB-like domain RA13_20605 1acb8a731e50454a6e91fbfab191293c 156 SUPERFAMILY SSF109854 9 156 4.76E-29 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_20605 1acb8a731e50454a6e91fbfab191293c 156 Gene3D G3DSA:1.20.120.450 4 147 1.7E-24 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_16210 58bc71b44ce092eb3b2bbc95cbb7a5ce 267 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 144 266 6.0E-62 T 13-10-2018 IPR014258 CAP domain, YkwD-like RA13_16210 58bc71b44ce092eb3b2bbc95cbb7a5ce 267 Pfam PF00188 Cysteine-rich secretory protein family 152 264 2.5E-23 T 13-10-2018 IPR014044 CAP domain RA13_16210 58bc71b44ce092eb3b2bbc95cbb7a5ce 267 SUPERFAMILY SSF55797 144 264 9.68E-27 T 13-10-2018 IPR035940 CAP superfamily RA13_16210 58bc71b44ce092eb3b2bbc95cbb7a5ce 267 Gene3D G3DSA:3.40.33.10 14 265 2.8E-65 T 13-10-2018 IPR035940 CAP superfamily RA13_07315 daa1ed571d930e03059926f805824bd7 486 Gene3D G3DSA:3.30.300.310 387 484 2.3E-31 T 13-10-2018 RA13_07315 daa1ed571d930e03059926f805824bd7 486 ProSitePatterns PS00455 Putative AMP-binding domain signature. 149 160 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_07315 daa1ed571d930e03059926f805824bd7 486 Pfam PF00501 AMP-binding enzyme 11 389 3.9E-92 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_07315 daa1ed571d930e03059926f805824bd7 486 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 30 477 8.3E-179 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 RA13_07315 daa1ed571d930e03059926f805824bd7 486 Pfam PF13193 AMP-binding enzyme C-terminal domain 398 471 1.2E-18 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_07315 daa1ed571d930e03059926f805824bd7 486 Hamap MF_00731 2-succinylbenzoate--CoA ligase [menE]. 5 480 48.588 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 RA13_07315 daa1ed571d930e03059926f805824bd7 486 SUPERFAMILY SSF56801 6 482 3.92E-139 T 13-10-2018 RA13_07315 daa1ed571d930e03059926f805824bd7 486 Gene3D G3DSA:3.40.50.12780 1 386 2.1E-148 T 13-10-2018 RA13_15240 9e38e36e3752ca1637807ea452826edb 188 Gene3D G3DSA:1.10.10.10 1 60 1.8E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15240 9e38e36e3752ca1637807ea452826edb 188 PIRSF PIRSF037733 1 188 1.3E-84 T 13-10-2018 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 RA13_15240 9e38e36e3752ca1637807ea452826edb 188 SUPERFAMILY SSF54637 74 182 1.02E-25 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_15240 9e38e36e3752ca1637807ea452826edb 188 Hamap MF_01814 Transcription factor FapR [fapR]. 1 188 38.992 T 13-10-2018 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 RA13_15240 9e38e36e3752ca1637807ea452826edb 188 Pfam PF03061 Thioesterase superfamily 108 166 6.5E-5 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RA13_15240 9e38e36e3752ca1637807ea452826edb 188 Gene3D G3DSA:3.10.129.10 68 188 5.5E-41 T 13-10-2018 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 TIGRFAM TIGR02941 Sigma_B: RNA polymerase sigma-B factor 3 253 3.9E-124 T 13-10-2018 IPR014288 RNA polymerase sigma-B factor GO:0016987 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 SUPERFAMILY SSF88946 4 103 3.53E-26 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 Pfam PF04539 Sigma-70 region 3 113 187 3.2E-17 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 223 249 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 Gene3D G3DSA:1.10.10.10 181 256 5.2E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 Pfam PF04545 Sigma-70, region 4 202 251 4.8E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 SUPERFAMILY SSF88659 107 180 2.96E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 PRINTS PR00046 Major sigma-70 factor signature 223 238 5.6E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 PRINTS PR00046 Major sigma-70 factor signature 58 71 5.6E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 PRINTS PR00046 Major sigma-70 factor signature 238 249 5.6E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 PRINTS PR00046 Major sigma-70 factor signature 206 218 5.6E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 Gene3D G3DSA:1.10.10.10 104 156 3.4E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 SUPERFAMILY SSF88659 181 254 2.8E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 Pfam PF04542 Sigma-70 region 2 34 103 1.9E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 28 253 1.1E-89 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 Gene3D G3DSA:1.20.120.1810 1 102 8.8E-15 T 13-10-2018 RA13_20990 ecbc764197cfacb36ce3410dd6373507 262 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 30 253 1.4E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SUPERFAMILY SSF51126 416 627 2.23E-5 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SUPERFAMILY SSF51126 118 405 9.58E-30 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 Gene3D G3DSA:2.160.20.10 106 565 1.2E-112 T 13-10-2018 IPR012334 Pectin lyase fold RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 Gene3D G3DSA:4.10.80.40 739 777 3.7E-61 T 13-10-2018 RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 Pfam PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain 635 849 7.8E-69 T 13-10-2018 IPR021865 Peptidase G2, IMC autoproteolytic cleavage domain RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SMART SM00710 238 260 7500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SMART SM00710 486 508 33.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SMART SM00710 298 330 28.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SMART SM00710 275 297 2200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SMART SM00710 202 226 7200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 SMART SM00710 332 353 170.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 Gene3D G3DSA:2.40.300.10 686 848 3.7E-61 T 13-10-2018 RA13_12105 1635ca29ab51c84f25b2882ee5f111a2 853 Pfam PF12708 Pectate lyase superfamily protein 119 349 1.6E-13 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RA13_07575 73250b9516f9bccfa73ab93b25b61fee 299 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 52 199 1.5E-8 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 RA13_07575 73250b9516f9bccfa73ab93b25b61fee 299 Gene3D G3DSA:3.40.50.1820 2 299 1.7E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_07575 73250b9516f9bccfa73ab93b25b61fee 299 SUPERFAMILY SSF53474 37 299 1.82E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_07575 73250b9516f9bccfa73ab93b25b61fee 299 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 144 174 - T 13-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 RA13_01540 26b0083dc5fce96b943f0e0a69ec17cf 99 Pfam PF01541 GIY-YIG catalytic domain 6 76 3.3E-19 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_01540 26b0083dc5fce96b943f0e0a69ec17cf 99 Gene3D G3DSA:3.40.1440.10 1 97 3.9E-34 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_01540 26b0083dc5fce96b943f0e0a69ec17cf 99 SUPERFAMILY SSF82771 6 80 1.7E-14 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_01540 26b0083dc5fce96b943f0e0a69ec17cf 99 SMART SM00465 5 83 5.4E-6 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_13175 1ad268a5d95ec8b0682a53b54332e5a0 121 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 1 118 6.7E-47 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RA13_13175 1ad268a5d95ec8b0682a53b54332e5a0 121 Pfam PF01597 Glycine cleavage H-protein 1 120 6.6E-47 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate RA13_13175 1ad268a5d95ec8b0682a53b54332e5a0 121 SUPERFAMILY SSF51230 1 119 1.69E-41 T 13-10-2018 IPR011053 Single hybrid motif RA13_13175 1ad268a5d95ec8b0682a53b54332e5a0 121 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 119 32.645 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RA13_13175 1ad268a5d95ec8b0682a53b54332e5a0 121 Gene3D G3DSA:2.40.50.100 1 121 4.3E-48 T 13-10-2018 RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 SUPERFAMILY SSF56420 2 151 3.27E-55 T 13-10-2018 IPR036821 Peptide deformylase superfamily RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 PIRSF PIRSF004749 1 159 6.4E-49 T 13-10-2018 IPR023635 Peptide deformylase RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 Pfam PF01327 Polypeptide deformylase 3 148 3.7E-49 T 13-10-2018 IPR023635 Peptide deformylase RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 Gene3D G3DSA:3.90.45.10 1 156 3.0E-59 T 13-10-2018 IPR036821 Peptide deformylase superfamily RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 158 5.5E-56 T 13-10-2018 IPR023635 Peptide deformylase RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 Hamap MF_00163 Peptide deformylase [def]. 2 158 29.444 T 13-10-2018 IPR023635 Peptide deformylase RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 PRINTS PR01576 Peptide deformylase signature 33 62 4.5E-36 T 13-10-2018 IPR023635 Peptide deformylase RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 PRINTS PR01576 Peptide deformylase signature 100 118 4.5E-36 T 13-10-2018 IPR023635 Peptide deformylase RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 PRINTS PR01576 Peptide deformylase signature 88 99 4.5E-36 T 13-10-2018 IPR023635 Peptide deformylase RA13_15320 d2e0eace64d735a30cf1da9d8c3a2590 160 PRINTS PR01576 Peptide deformylase signature 119 148 4.5E-36 T 13-10-2018 IPR023635 Peptide deformylase RA13_17765 3d6bf4c0927004b433624bf6e32ef608 280 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 9 215 2.1E-60 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_17765 3d6bf4c0927004b433624bf6e32ef608 280 Gene3D G3DSA:3.30.70.120 193 268 2.4E-20 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_17765 3d6bf4c0927004b433624bf6e32ef608 280 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 221 275 1.2E-18 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 RA13_17765 3d6bf4c0927004b433624bf6e32ef608 280 PIRSF PIRSF006483 1 280 4.7E-98 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 SUPERFAMILY SSF52540 398 693 4.25E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 Gene3D G3DSA:3.40.50.300 422 707 3.2E-111 T 13-10-2018 RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 Gene3D G3DSA:1.10.10.10 709 777 6.8E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 SMART SM00382 460 642 1.4E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 Pfam PF09397 Ftsk gamma domain 719 778 2.8E-29 T 13-10-2018 IPR018541 FtsK gamma domain RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 SMART SM00843 716 781 6.6E-40 T 13-10-2018 IPR018541 FtsK gamma domain RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 Gene3D G3DSA:3.30.980.40 317 420 3.1E-38 T 13-10-2018 RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 SUPERFAMILY SSF46785 717 782 1.18E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_14765 4a20246cd8208275e89c0db8addcb9df 788 Pfam PF01580 FtsK/SpoIIIE family 425 621 5.7E-65 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RA13_10340 0f75402aa4b0bf837b0c7de79d4f8ce1 255 Gene3D G3DSA:3.40.190.10 34 251 2.5E-71 T 13-10-2018 RA13_10340 0f75402aa4b0bf837b0c7de79d4f8ce1 255 Gene3D G3DSA:3.40.190.10 118 211 2.5E-71 T 13-10-2018 RA13_10340 0f75402aa4b0bf837b0c7de79d4f8ce1 255 SUPERFAMILY SSF53850 1 253 2.6E-72 T 13-10-2018 RA13_10340 0f75402aa4b0bf837b0c7de79d4f8ce1 255 SMART SM00062 33 254 3.1E-83 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_10340 0f75402aa4b0bf837b0c7de79d4f8ce1 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 252 7.7E-65 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_10340 0f75402aa4b0bf837b0c7de79d4f8ce1 255 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 55 68 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RA13_10340 0f75402aa4b0bf837b0c7de79d4f8ce1 255 SMART SM00079 33 253 1.1E-5 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RA13_08940 a1dec57ff2328b5dce670d715f670b74 128 Pfam PF12670 Protein of unknown function (DUF3792) 9 119 2.6E-22 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane RA13_08940 a1dec57ff2328b5dce670d715f670b74 128 TIGRFAM TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family 10 122 2.4E-28 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane RA13_04265 95c103323d0d8f9bdd9b2d2e1cf4f2c0 453 SUPERFAMILY SSF103473 4 450 1.06E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_04265 95c103323d0d8f9bdd9b2d2e1cf4f2c0 453 Gene3D G3DSA:1.20.1720.10 10 248 3.4E-40 T 13-10-2018 RA13_04265 95c103323d0d8f9bdd9b2d2e1cf4f2c0 453 Gene3D G3DSA:1.20.1250.20 256 451 2.3E-21 T 13-10-2018 RA13_04265 95c103323d0d8f9bdd9b2d2e1cf4f2c0 453 Pfam PF07690 Major Facilitator Superfamily 15 407 3.5E-56 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 274 44.733 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 SMART SM00898 2 118 4.2E-52 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 SUPERFAMILY SSF81624 2 138 1.7E-42 T 13-10-2018 IPR035937 MutM-like, N-terminal RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 SUPERFAMILY SSF57716 223 274 2.54E-16 T 13-10-2018 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 ProSitePatterns PS01242 Zinc finger FPG-type signature. 249 273 - T 13-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 2 117 1.3E-33 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 Pfam PF06827 Zinc finger found in FPG and IleRS 247 274 1.3E-10 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 SMART SM01232 134 226 1.3E-46 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 134 223 2.5E-32 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 Gene3D G3DSA:3.20.190.10 2 130 5.2E-42 T 13-10-2018 IPR035937 MutM-like, N-terminal RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 Gene3D G3DSA:1.10.8.50 136 275 4.1E-50 T 13-10-2018 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 273 4.4E-117 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RA13_08155 5295bb2532fc5d5e73896ca63c35e9cb 275 SUPERFAMILY SSF46946 134 223 3.79E-30 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RA13_16335 fa6d96a3cc55497be3bcb2b3de1166e3 213 Pfam PF06508 Queuosine biosynthesis protein QueC 1 205 5.0E-86 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RA13_16335 fa6d96a3cc55497be3bcb2b3de1166e3 213 SUPERFAMILY SSF52402 1 205 1.04E-63 T 13-10-2018 RA13_16335 fa6d96a3cc55497be3bcb2b3de1166e3 213 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 1 211 49.95 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RA13_16335 fa6d96a3cc55497be3bcb2b3de1166e3 213 PIRSF PIRSF006293 1 212 1.0E-77 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RA13_16335 fa6d96a3cc55497be3bcb2b3de1166e3 213 Gene3D G3DSA:3.40.50.620 1 213 2.3E-75 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_16335 fa6d96a3cc55497be3bcb2b3de1166e3 213 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 1 198 6.2E-88 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RA13_21120 08ea95ea2c8605e0f9cd41728d243c03 308 SMART SM00382 30 211 2.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_21120 08ea95ea2c8605e0f9cd41728d243c03 308 Gene3D G3DSA:3.40.50.300 2 246 7.1E-63 T 13-10-2018 RA13_21120 08ea95ea2c8605e0f9cd41728d243c03 308 Pfam PF00005 ABC transporter 21 162 2.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_21120 08ea95ea2c8605e0f9cd41728d243c03 308 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_21120 08ea95ea2c8605e0f9cd41728d243c03 308 SUPERFAMILY SSF52540 3 224 6.78E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05200 dd542772ec9c187a2bf0b30817eb893b 202 Pfam PF01965 DJ-1/PfpI family 6 180 6.6E-27 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RA13_05200 dd542772ec9c187a2bf0b30817eb893b 202 SUPERFAMILY SSF52317 6 199 1.63E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_05200 dd542772ec9c187a2bf0b30817eb893b 202 Gene3D G3DSA:3.40.50.880 1 201 3.0E-70 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 SMART SM00640 27 446 4.2E-154 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 Gene3D G3DSA:2.115.10.20 1 348 4.8E-133 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 SUPERFAMILY SSF49899 331 486 3.48E-32 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 343 480 2.9E-31 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 27 40 - T 13-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 SUPERFAMILY SSF75005 18 332 4.08E-117 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 Gene3D G3DSA:2.60.120.560 349 483 3.2E-34 T 13-10-2018 RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 14 457 1.4E-152 T 13-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 RA13_13215 f86e13f33d49d479fef41cbc3040c939 492 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 27 330 8.8E-111 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal RA13_20725 459433db2a47492c16aff418a25e8597 463 SUPERFAMILY SSF46785 9 79 1.15E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20725 459433db2a47492c16aff418a25e8597 463 SUPERFAMILY SSF53383 84 462 2.07E-78 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_20725 459433db2a47492c16aff418a25e8597 463 SMART SM00345 19 78 1.0E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20725 459433db2a47492c16aff418a25e8597 463 Gene3D G3DSA:3.40.640.10 92 456 6.8E-120 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_20725 459433db2a47492c16aff418a25e8597 463 Pfam PF00155 Aminotransferase class I and II 113 456 7.8E-14 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_20725 459433db2a47492c16aff418a25e8597 463 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 1.7E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20725 459433db2a47492c16aff418a25e8597 463 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 1.7E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20725 459433db2a47492c16aff418a25e8597 463 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 78 3.6E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20725 459433db2a47492c16aff418a25e8597 463 Gene3D G3DSA:1.10.10.10 1 84 2.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05610 23b9cf97f2b2b24c7322c620d3f23d94 134 Pfam PF13560 Helix-turn-helix domain 2 58 5.8E-16 T 13-10-2018 RA13_05610 23b9cf97f2b2b24c7322c620d3f23d94 134 SUPERFAMILY SSF47413 1 64 8.55E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_05610 23b9cf97f2b2b24c7322c620d3f23d94 134 Gene3D G3DSA:1.10.260.40 1 67 1.0E-18 T 13-10-2018 RA13_05610 23b9cf97f2b2b24c7322c620d3f23d94 134 SMART SM00530 6 62 2.3E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_14975 8b169e606dd1bb3aeaba968d62cd08a0 296 PIRSF PIRSF003092 4 296 5.2E-78 T 13-10-2018 IPR025501 ATP binding protein MinD RA13_14975 8b169e606dd1bb3aeaba968d62cd08a0 296 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 30 267 1.5E-20 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RA13_14975 8b169e606dd1bb3aeaba968d62cd08a0 296 Gene3D G3DSA:3.40.50.300 29 268 2.9E-60 T 13-10-2018 RA13_14975 8b169e606dd1bb3aeaba968d62cd08a0 296 SUPERFAMILY SSF52540 28 274 2.0E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 SUPERFAMILY SSF46785 31 160 1.08E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 101 1.5E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 85 1.5E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 135 155 1.5E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 PRINTS PR00598 Bacterial regulatory protein MarR family signature 105 121 1.5E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 Gene3D G3DSA:1.10.10.10 25 163 3.1E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 Pfam PF01047 MarR family 52 109 3.8E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20295 1ae1502e2e8e47ea25db07bf0071f026 164 SMART SM00347 45 145 1.5E-31 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_08875 b1d4b63423b968501874f1cbd1b1cd47 245 Gene3D G3DSA:1.10.10.200 1 81 2.1E-33 T 13-10-2018 IPR017856 Integrase-like, N-terminal RA13_08875 b1d4b63423b968501874f1cbd1b1cd47 245 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 2.5E-106 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_08875 b1d4b63423b968501874f1cbd1b1cd47 245 Gene3D G3DSA:3.30.70.980 85 237 6.7E-58 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_08875 b1d4b63423b968501874f1cbd1b1cd47 245 Gene3D G3DSA:3.30.70.980 134 204 6.7E-58 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_08875 b1d4b63423b968501874f1cbd1b1cd47 245 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 240 37.702 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_08875 b1d4b63423b968501874f1cbd1b1cd47 245 Pfam PF01709 Transcriptional regulator 5 238 1.5E-99 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_08875 b1d4b63423b968501874f1cbd1b1cd47 245 SUPERFAMILY SSF75625 3 239 2.09E-95 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_20090 c4c1f47abd47ffe45a8c191fe128b4b5 524 Gene3D G3DSA:3.20.20.70 140 523 2.9E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_20090 c4c1f47abd47ffe45a8c191fe128b4b5 524 PIRSF PIRSF500060 1 523 6.7E-219 T 13-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria RA13_20090 c4c1f47abd47ffe45a8c191fe128b4b5 524 SUPERFAMILY SSF51395 13 512 2.93E-107 T 13-10-2018 RA13_20090 c4c1f47abd47ffe45a8c191fe128b4b5 524 PIRSF PIRSF006429 1 522 6.6E-169 T 13-10-2018 IPR024188 Glutamate synthase large subunit-like protein RA13_20090 c4c1f47abd47ffe45a8c191fe128b4b5 524 Pfam PF01645 Conserved region in glutamate synthase 116 493 4.0E-122 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 SMART SM00344 2 109 7.8E-31 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 Pfam PF01037 Lrp/AsnC ligand binding domain 68 134 1.0E-6 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 SUPERFAMILY SSF54909 64 137 3.62E-7 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 Gene3D G3DSA:3.30.70.920 53 139 5.7E-14 T 13-10-2018 RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 4.0E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 4.0E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 4.0E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 SUPERFAMILY SSF46785 1 62 3.9E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 Gene3D G3DSA:1.10.10.10 1 52 8.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20635 89e30637788fbfcddcf3bba41108fa4c 139 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 7.3E-15 T 13-10-2018 RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 Gene3D G3DSA:3.40.50.300 1 246 2.0E-74 T 13-10-2018 RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 Pfam PF00005 ABC transporter 22 169 7.9E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 SMART SM00382 30 218 6.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 Gene3D G3DSA:3.30.70.260 247 341 3.7E-31 T 13-10-2018 RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 SUPERFAMILY SSF55021 249 340 2.98E-24 T 13-10-2018 RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 Pfam PF09383 NIL domain 266 337 4.3E-22 T 13-10-2018 IPR018449 NIL domain RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 SMART SM00930 263 338 1.4E-30 T 13-10-2018 IPR018449 NIL domain RA13_06070 8a8a5aa39c14c6e9093b29cdf1cb60c9 341 SUPERFAMILY SSF52540 1 240 6.14E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11200 73fe12e8f46f068f49eb5913a42c3ab9 377 Pfam PF13439 Glycosyltransferase Family 4 14 178 8.4E-27 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RA13_11200 73fe12e8f46f068f49eb5913a42c3ab9 377 Gene3D G3DSA:3.40.50.2000 176 357 1.1E-133 T 13-10-2018 RA13_11200 73fe12e8f46f068f49eb5913a42c3ab9 377 Gene3D G3DSA:3.40.50.2000 14 368 1.1E-133 T 13-10-2018 RA13_11200 73fe12e8f46f068f49eb5913a42c3ab9 377 SUPERFAMILY SSF53756 9 373 8.79E-88 T 13-10-2018 RA13_11200 73fe12e8f46f068f49eb5913a42c3ab9 377 TIGRFAM TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA 4 374 9.9E-176 T 13-10-2018 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA GO:0016757|GO:0071793 RA13_11200 73fe12e8f46f068f49eb5913a42c3ab9 377 Pfam PF00534 Glycosyl transferases group 1 188 349 2.5E-43 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_06215 88c32f1e7803f9001f9266d7efd47f0f 100 Gene3D G3DSA:1.10.10.10 1 100 4.0E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_06215 88c32f1e7803f9001f9266d7efd47f0f 100 Pfam PF00486 Transcriptional regulatory protein, C terminal 22 96 1.6E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_06215 88c32f1e7803f9001f9266d7efd47f0f 100 SUPERFAMILY SSF46894 2 98 1.25E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_06215 88c32f1e7803f9001f9266d7efd47f0f 100 SMART SM00862 18 96 1.3E-13 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_21160 7a4f41b7339ed2db957e111be9047e56 114 Pfam PF07883 Cupin domain 41 88 2.3E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RA13_21160 7a4f41b7339ed2db957e111be9047e56 114 SUPERFAMILY SSF51182 19 103 1.56E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_21160 7a4f41b7339ed2db957e111be9047e56 114 ProSitePatterns PS00725 Germin family signature. 38 51 - T 13-10-2018 IPR019780 Germin, manganese binding site GO:0030145 RA13_21160 7a4f41b7339ed2db957e111be9047e56 114 Gene3D G3DSA:2.60.120.10 3 105 1.4E-24 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_16975 9530e5805e1b5c2a30b845a6833ca3c5 162 ProDom PD034535 XKDI PHAGE PHAGE-LIKE PBSX LIN1275 RELATED ELEMENT YQBI 1 162 6.0E-66 T 13-10-2018 RA13_16975 9530e5805e1b5c2a30b845a6833ca3c5 162 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 8 92 2.5E-10 T 13-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 SUPERFAMILY SSF51735 4 147 1.11E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 Hamap MF_00487 Malate dehydrogenase [mdh]. 6 312 46.816 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 SUPERFAMILY SSF56327 151 309 1.35E-53 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 151 309 2.4E-28 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 147 3.5E-41 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 5 311 6.1E-173 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 Gene3D G3DSA:3.90.110.10 150 310 1.5E-61 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 PIRSF PIRSF000102 2 311 2.3E-104 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 PRINTS PR00086 L-lactate dehydrogenase signature 175 188 1.6E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 PRINTS PR00086 L-lactate dehydrogenase signature 7 31 1.6E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 PRINTS PR00086 L-lactate dehydrogenase signature 121 141 1.6E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 1.6E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 PRINTS PR00086 L-lactate dehydrogenase signature 145 163 1.6E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RA13_08135 2c72ad72f7154aa5b8d5f79a258d8387 312 Gene3D G3DSA:3.40.50.720 1 149 1.3E-60 T 13-10-2018 RA13_09170 933fb6f5b632e7698b18981cadc46c37 307 Gene3D G3DSA:3.40.50.1100 45 146 7.9E-110 T 13-10-2018 RA13_09170 933fb6f5b632e7698b18981cadc46c37 307 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RA13_09170 933fb6f5b632e7698b18981cadc46c37 307 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 292 2.4E-62 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RA13_09170 933fb6f5b632e7698b18981cadc46c37 307 SUPERFAMILY SSF53686 2 301 2.1E-88 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RA13_09170 933fb6f5b632e7698b18981cadc46c37 307 Gene3D G3DSA:3.40.50.1100 9 299 7.9E-110 T 13-10-2018 RA13_17930 4163aa5602c1802ec5b9a2aea4cf7d83 301 SUPERFAMILY SSF56529 80 299 1.07E-77 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RA13_17930 4163aa5602c1802ec5b9a2aea4cf7d83 301 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 93 299 1.1E-69 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RA13_17930 4163aa5602c1802ec5b9a2aea4cf7d83 301 Gene3D G3DSA:3.90.850.10 87 301 3.2E-86 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RA13_19760 878395aa6c091609dd0bf49bdfdd936b 296 Pfam PF00005 ABC transporter 17 152 3.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19760 878395aa6c091609dd0bf49bdfdd936b 296 Gene3D G3DSA:3.40.50.300 1 229 5.2E-67 T 13-10-2018 RA13_19760 878395aa6c091609dd0bf49bdfdd936b 296 SMART SM00382 26 279 1.5E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19760 878395aa6c091609dd0bf49bdfdd936b 296 ProSitePatterns PS00211 ABC transporters family signature. 125 139 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19760 878395aa6c091609dd0bf49bdfdd936b 296 SUPERFAMILY SSF52540 2 217 2.19E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10345 b426193639085ba0cc8019f44a25d528 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 216 1.0E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_10345 b426193639085ba0cc8019f44a25d528 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 2.3E-31 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RA13_10345 b426193639085ba0cc8019f44a25d528 219 Gene3D G3DSA:1.10.3720.10 1 218 6.2E-57 T 13-10-2018 IPR035906 MetI-like superfamily RA13_10345 b426193639085ba0cc8019f44a25d528 219 SUPERFAMILY SSF161098 13 201 5.1E-45 T 13-10-2018 IPR035906 MetI-like superfamily RA13_00825 e4b077c24cd792ae53477de934c80e1d 254 SUPERFAMILY SSF88713 25 243 1.09E-51 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_00825 e4b077c24cd792ae53477de934c80e1d 254 TIGRFAM TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB 53 243 7.4E-81 T 13-10-2018 IPR014132 Sporulation polysaccharide deacetylase, PdaB RA13_00825 e4b077c24cd792ae53477de934c80e1d 254 Pfam PF01522 Polysaccharide deacetylase 52 175 3.4E-26 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_00825 e4b077c24cd792ae53477de934c80e1d 254 Gene3D G3DSA:3.20.20.370 47 254 7.8E-57 T 13-10-2018 RA13_06900 535182f791973349c3365d69946d3b1a 689 SUPERFAMILY SSF51735 428 683 1.78E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06900 535182f791973349c3365d69946d3b1a 689 SMART SM01007 20 219 5.5E-35 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RA13_06900 535182f791973349c3365d69946d3b1a 689 Gene3D G3DSA:3.40.50.720 416 686 2.1E-63 T 13-10-2018 RA13_06900 535182f791973349c3365d69946d3b1a 689 TIGRFAM TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase 19 689 0.0 T 13-10-2018 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase RA13_06900 535182f791973349c3365d69946d3b1a 689 SUPERFAMILY SSF53639 18 224 9.61E-36 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RA13_06900 535182f791973349c3365d69946d3b1a 689 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 435 683 3.1E-46 T 13-10-2018 RA13_06900 535182f791973349c3365d69946d3b1a 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 429 446 7.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06900 535182f791973349c3365d69946d3b1a 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 505 516 7.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06900 535182f791973349c3365d69946d3b1a 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 579 598 7.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06900 535182f791973349c3365d69946d3b1a 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 553 569 7.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06900 535182f791973349c3365d69946d3b1a 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 600 617 7.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06900 535182f791973349c3365d69946d3b1a 689 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 647 667 7.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06900 535182f791973349c3365d69946d3b1a 689 Gene3D G3DSA:3.40.225.10 18 225 2.5E-63 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RA13_06900 535182f791973349c3365d69946d3b1a 689 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 20 218 2.0E-24 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 Gene3D G3DSA:1.50.10.10 212 338 8.4E-6 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 Pfam PF03190 Protein of unknown function, DUF255 8 168 2.6E-77 T 13-10-2018 IPR004879 Domain of unknown function DUF255 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 Gene3D G3DSA:3.40.30.10 5 175 4.4E-73 T 13-10-2018 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 SUPERFAMILY SSF48208 193 542 4.64E-88 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 PIRSF PIRSF006402 1 686 2.1E-253 T 13-10-2018 IPR024705 Spermatogenesis-associated protein 20 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 Gene3D G3DSA:1.50.10.20 420 588 4.4E-9 T 13-10-2018 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 222 326 0.063 T 13-10-2018 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 492 579 0.31 T 13-10-2018 RA13_01950 922beaa46103ab8d2aa5ab910c82bf44 687 SUPERFAMILY SSF52833 4 134 1.62E-36 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_17080 6d2605116d02a47d9ba414a7ea2247cf 378 Pfam PF13424 Tetratricopeptide repeat 221 291 2.5E-11 T 13-10-2018 RA13_17080 6d2605116d02a47d9ba414a7ea2247cf 378 SMART SM00028 222 255 2.4E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_17080 6d2605116d02a47d9ba414a7ea2247cf 378 SMART SM00028 261 294 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_17080 6d2605116d02a47d9ba414a7ea2247cf 378 Gene3D G3DSA:1.25.40.10 2 378 6.9E-124 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_17080 6d2605116d02a47d9ba414a7ea2247cf 378 SUPERFAMILY SSF48452 105 307 7.59E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_20280 c48f3b5e177a3025269400be8e80b31c 128 Pfam PF03330 Lytic transglycolase 36 123 1.7E-9 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain RA13_07620 c91a989219a8c2fb8b8219ce7e3c4808 497 SUPERFAMILY SSF53850 22 495 2.51E-89 T 13-10-2018 RA13_07620 c91a989219a8c2fb8b8219ce7e3c4808 497 Pfam PF13416 Bacterial extracellular solute-binding protein 60 309 2.0E-17 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RA13_07620 c91a989219a8c2fb8b8219ce7e3c4808 497 Gene3D G3DSA:3.40.190.10 61 411 9.0E-64 T 13-10-2018 RA13_07620 c91a989219a8c2fb8b8219ce7e3c4808 497 Gene3D G3DSA:3.40.190.10 155 494 9.0E-64 T 13-10-2018 RA13_04940 cc1cfb405d92527397f42f3ccd060f72 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 1.6E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_04940 cc1cfb405d92527397f42f3ccd060f72 189 SUPERFAMILY SSF46689 4 66 6.67E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_04940 cc1cfb405d92527397f42f3ccd060f72 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 2.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_04940 cc1cfb405d92527397f42f3ccd060f72 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 2.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_04940 cc1cfb405d92527397f42f3ccd060f72 189 Gene3D G3DSA:1.10.357.10 1 187 1.3E-26 T 13-10-2018 RA13_09495 779ffa1e2215ad586c86bc5c95ef6da8 246 Pfam PF13649 Methyltransferase domain 36 131 3.9E-24 T 13-10-2018 RA13_09495 779ffa1e2215ad586c86bc5c95ef6da8 246 SUPERFAMILY SSF53335 3 241 2.09E-59 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_09495 779ffa1e2215ad586c86bc5c95ef6da8 246 Gene3D G3DSA:2.20.25.110 139 200 1.2E-86 T 13-10-2018 RA13_09495 779ffa1e2215ad586c86bc5c95ef6da8 246 Gene3D G3DSA:3.40.50.150 6 239 1.2E-86 T 13-10-2018 RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 SUPERFAMILY SSF158791 8 133 2.09E-26 T 13-10-2018 RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 Gene3D G3DSA:3.10.580.10 133 259 2.9E-41 T 13-10-2018 RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 Pfam PF00571 CBS domain 200 254 6.4E-8 T 13-10-2018 IPR000644 CBS domain RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 Pfam PF00571 CBS domain 137 192 7.9E-6 T 13-10-2018 IPR000644 CBS domain RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 TIGRFAM TIGR00400 mgtE: magnesium transporter 4 451 7.0E-213 T 13-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 SMART SM00116 207 255 2.3E-7 T 13-10-2018 IPR000644 CBS domain RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 SMART SM00116 143 196 2.1 T 13-10-2018 IPR000644 CBS domain RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 Gene3D G3DSA:1.25.60.10 5 131 4.1E-20 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 SUPERFAMILY SSF54631 135 266 1.64E-29 T 13-10-2018 RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 SUPERFAMILY SSF161093 281 448 6.28E-53 T 13-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 Pfam PF01769 Divalent cation transporter 320 441 5.9E-31 T 13-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 Pfam PF03448 MgtE intracellular N domain 33 134 1.7E-21 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 Gene3D G3DSA:1.10.357.20 272 448 3.8E-60 T 13-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain RA13_16580 c0d9effeab702cc12624d8fae4b4d2ac 451 SMART SM00924 33 136 8.6E-29 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 SUPERFAMILY SSF52540 238 447 6.21E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 Pfam PF00271 Helicase conserved C-terminal domain 563 662 2.8E-8 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 Pfam PF04851 Type III restriction enzyme, res subunit 267 431 5.2E-19 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 TIGRFAM TIGR00595 priA: primosomal protein N' 292 802 2.2E-233 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 Gene3D G3DSA:1.10.8.630 3 115 1.0E-26 T 13-10-2018 RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 SMART SM00490 566 663 5.3E-9 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 Hamap MF_00983 Probable primosomal protein N' [priA]. 9 804 26.348 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 Gene3D G3DSA:3.40.50.300 254 450 2.7E-78 T 13-10-2018 RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 SUPERFAMILY SSF52540 532 708 1.42E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15325 5132d2838f4d272dbc7da403a28b08dd 805 SMART SM00487 264 455 7.9E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 Gene3D G3DSA:3.90.1640.10 322 541 3.8E-53 T 13-10-2018 RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 Pfam PF01368 DHH family 339 496 1.1E-21 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 Gene3D G3DSA:3.30.450.20 53 161 6.1E-35 T 13-10-2018 RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 SMART SM00267 132 299 3.7E-13 T 13-10-2018 IPR000160 GGDEF domain RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 Gene3D G3DSA:3.10.310.30 542 655 3.9E-8 T 13-10-2018 RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 PIRSF PIRSF026583 1 659 3.2E-275 T 13-10-2018 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 SUPERFAMILY SSF64182 339 644 1.57E-66 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily RA13_02080 5598abeb6b2518fedae53d26e28835fb 659 Pfam PF02272 DHHA1 domain 518 649 9.5E-15 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RA13_13160 ea21f8ec8ba048bd7a59f766c6221742 144 SUPERFAMILY SSF82784 6 138 1.7E-19 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RA13_13160 ea21f8ec8ba048bd7a59f766c6221742 144 Pfam PF02566 OsmC-like protein 39 138 4.8E-12 T 13-10-2018 IPR003718 OsmC/Ohr family RA13_13160 ea21f8ec8ba048bd7a59f766c6221742 144 Gene3D G3DSA:3.30.300.20 5 141 3.2E-20 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_18355 8d41d6ad72a4d9b9a9943097fdebbf0b 958 Gene3D G3DSA:3.40.50.300 1 257 9.6E-19 T 13-10-2018 RA13_18355 8d41d6ad72a4d9b9a9943097fdebbf0b 958 SUPERFAMILY SSF52540 1 956 1.33E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18355 8d41d6ad72a4d9b9a9943097fdebbf0b 958 Pfam PF13514 AAA domain 1 196 2.2E-28 T 13-10-2018 IPR038734 Uncharacterized protein YhaN, AAA domain RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 5.3E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 5.3E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 124 144 5.3E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 ProSitePatterns PS01117 MarR-type HTH domain signature. 73 107 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 Pfam PF01047 MarR family 42 99 8.8E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 SUPERFAMILY SSF46785 14 144 5.12E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 Gene3D G3DSA:1.10.10.10 2 150 1.7E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16560 5c2d4b95e49e60d96c4da2b6e3998b30 154 SMART SM00347 34 134 7.3E-34 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_12500 9bedffde60b6d0635b7cd26a3a8f0d72 181 Pfam PF00589 Phage integrase family 13 164 2.4E-24 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RA13_12500 9bedffde60b6d0635b7cd26a3a8f0d72 181 SUPERFAMILY SSF56349 6 179 1.47E-39 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RA13_12500 9bedffde60b6d0635b7cd26a3a8f0d72 181 Gene3D G3DSA:1.10.443.10 6 179 1.3E-32 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RA13_01045 4edaa3d7daeef112e4b0e33f5552b217 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 207 37.937 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01045 4edaa3d7daeef112e4b0e33f5552b217 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 204 3.8E-83 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01045 4edaa3d7daeef112e4b0e33f5552b217 207 SUPERFAMILY SSF52166 1 206 1.28E-84 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RA13_01045 4edaa3d7daeef112e4b0e33f5552b217 207 Gene3D G3DSA:3.40.1370.10 3 207 4.3E-83 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RA13_01045 4edaa3d7daeef112e4b0e33f5552b217 207 Pfam PF00573 Ribosomal protein L4/L1 family 17 204 8.0E-73 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RA13_17195 2b53492ad44d5879246c1523b9c219f8 208 Gene3D G3DSA:3.90.79.10 45 208 6.7E-38 T 13-10-2018 RA13_17195 2b53492ad44d5879246c1523b9c219f8 208 Pfam PF00293 NUDIX domain 74 162 2.0E-9 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RA13_17195 2b53492ad44d5879246c1523b9c219f8 208 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 7 61 7.0E-24 T 13-10-2018 RA13_17195 2b53492ad44d5879246c1523b9c219f8 208 SUPERFAMILY SSF55811 60 198 7.45E-28 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RA13_19685 07f7807975382a367de70180f8b8f7ce 396 Pfam PF07690 Major Facilitator Superfamily 243 383 3.0E-10 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19685 07f7807975382a367de70180f8b8f7ce 396 Pfam PF07690 Major Facilitator Superfamily 24 240 3.0E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19685 07f7807975382a367de70180f8b8f7ce 396 SUPERFAMILY SSF103473 16 392 9.16E-54 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_19685 07f7807975382a367de70180f8b8f7ce 396 PRINTS PR01035 Tetracycline resistance protein signature 143 165 8.0E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_19685 07f7807975382a367de70180f8b8f7ce 396 PRINTS PR01035 Tetracycline resistance protein signature 29 45 8.0E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_19685 07f7807975382a367de70180f8b8f7ce 396 PRINTS PR01035 Tetracycline resistance protein signature 171 191 8.0E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_19685 07f7807975382a367de70180f8b8f7ce 396 Gene3D G3DSA:1.20.1250.20 14 387 1.1E-51 T 13-10-2018 RA13_03640 0a780f8a9b19866183594e61357b48ff 329 Pfam PF03601 Conserved hypothetical protein 698 10 309 4.3E-83 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 RA13_16110 4d1318bda6403739215a18edf34b7156 151 SUPERFAMILY SSF52218 1 143 2.79E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_16110 4d1318bda6403739215a18edf34b7156 151 PRINTS PR00369 Flavodoxin signature 53 64 1.5E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_16110 4d1318bda6403739215a18edf34b7156 151 PRINTS PR00369 Flavodoxin signature 82 92 1.5E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_16110 4d1318bda6403739215a18edf34b7156 151 PRINTS PR00369 Flavodoxin signature 106 125 1.5E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_16110 4d1318bda6403739215a18edf34b7156 151 PRINTS PR00369 Flavodoxin signature 5 18 1.5E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_16110 4d1318bda6403739215a18edf34b7156 151 Pfam PF00258 Flavodoxin 6 136 1.7E-32 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RA13_16110 4d1318bda6403739215a18edf34b7156 151 Gene3D G3DSA:3.40.50.360 1 144 1.4E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_16110 4d1318bda6403739215a18edf34b7156 151 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RA13_16110 4d1318bda6403739215a18edf34b7156 151 TIGRFAM TIGR01753 flav_short: flavodoxin 4 143 8.4E-52 T 13-10-2018 IPR010087 Flavodoxin, short chain GO:0010181 RA13_01015 f3527853780abeced6befc2565a4e57a 144 SUPERFAMILY SSF54686 1 137 1.7E-59 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_01015 f3527853780abeced6befc2565a4e57a 144 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 41.632 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01015 f3527853780abeced6befc2565a4e57a 144 Gene3D G3DSA:3.90.1170.10 1 143 6.8E-56 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RA13_01015 f3527853780abeced6befc2565a4e57a 144 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 2.6E-53 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RA13_01015 f3527853780abeced6befc2565a4e57a 144 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01015 f3527853780abeced6befc2565a4e57a 144 PRINTS PR00060 Ribosomal protein L16 signature 24 36 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01015 f3527853780abeced6befc2565a4e57a 144 PRINTS PR00060 Ribosomal protein L16 signature 58 87 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01015 f3527853780abeced6befc2565a4e57a 144 PRINTS PR00060 Ribosomal protein L16 signature 42 53 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01015 f3527853780abeced6befc2565a4e57a 144 PRINTS PR00060 Ribosomal protein L16 signature 88 117 8.4E-41 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01015 f3527853780abeced6befc2565a4e57a 144 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01015 f3527853780abeced6befc2565a4e57a 144 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 5.8E-64 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09510 cb4f6665e36db54c5be594a97a0f01fe 189 Gene3D G3DSA:3.40.140.10 2 149 1.9E-47 T 13-10-2018 RA13_09510 cb4f6665e36db54c5be594a97a0f01fe 189 PIRSF PIRSF006019 1 151 3.7E-64 T 13-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RA13_09510 cb4f6665e36db54c5be594a97a0f01fe 189 TIGRFAM TIGR02571 ComEB: ComE operon protein 2 2 150 1.1E-82 T 13-10-2018 IPR013404 Competence operon E, ComEB RA13_09510 cb4f6665e36db54c5be594a97a0f01fe 189 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 70 106 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RA13_09510 cb4f6665e36db54c5be594a97a0f01fe 189 SUPERFAMILY SSF53927 8 145 2.48E-40 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RA13_09510 cb4f6665e36db54c5be594a97a0f01fe 189 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 116 1.9E-28 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RA13_01215 170b3a74580ebde011cc95dd677b1a7c 154 Gene3D G3DSA:1.10.10.1240 3 73 4.5E-36 T 13-10-2018 RA13_01215 170b3a74580ebde011cc95dd677b1a7c 154 PIRSF PIRSF010607 1 154 5.7E-67 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 RA13_01215 170b3a74580ebde011cc95dd677b1a7c 154 Gene3D G3DSA:1.10.1200.150 74 154 1.7E-28 T 13-10-2018 RA13_01215 170b3a74580ebde011cc95dd677b1a7c 154 Pfam PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) 4 151 1.1E-57 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 RA13_20310 411b4a8258d722549f5e79817fe4b8bb 165 Pfam PF08281 Sigma-70, region 4 104 155 6.4E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_20310 411b4a8258d722549f5e79817fe4b8bb 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 157 2.8E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_20310 411b4a8258d722549f5e79817fe4b8bb 165 SUPERFAMILY SSF88946 11 90 9.42E-16 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_20310 411b4a8258d722549f5e79817fe4b8bb 165 SUPERFAMILY SSF88659 102 158 1.78E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_20310 411b4a8258d722549f5e79817fe4b8bb 165 Pfam PF04542 Sigma-70 region 2 14 80 3.9E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_20310 411b4a8258d722549f5e79817fe4b8bb 165 Gene3D G3DSA:1.10.1740.10 4 81 1.4E-16 T 13-10-2018 RA13_20310 411b4a8258d722549f5e79817fe4b8bb 165 Gene3D G3DSA:1.10.10.10 98 161 4.7E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_12705 37a57ca8102b8dd4816c53da074b9588 138 SUPERFAMILY SSF54637 6 133 5.53E-38 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_12705 37a57ca8102b8dd4816c53da074b9588 138 Gene3D G3DSA:3.10.129.10 2 129 2.4E-34 T 13-10-2018 RA13_12705 37a57ca8102b8dd4816c53da074b9588 138 Pfam PF03061 Thioesterase superfamily 18 100 5.7E-14 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RA13_12705 37a57ca8102b8dd4816c53da074b9588 138 PIRSF PIRSF003230 1 137 9.1E-31 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RA13_12705 37a57ca8102b8dd4816c53da074b9588 138 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 123 8.9E-42 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.5E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 Gene3D G3DSA:1.10.260.40 3 58 8.8E-21 T 13-10-2018 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.0E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.0E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 Gene3D G3DSA:3.40.50.2300 59 156 1.3E-16 T 13-10-2018 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 60 313 9.3E-51 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 SUPERFAMILY SSF47413 2 60 3.84E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 SMART SM00354 1 71 2.8E-34 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 SUPERFAMILY SSF53822 58 299 3.21E-43 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_01935 9c7bfd19c991dde42b1d9e4365d5dc0d 316 Gene3D G3DSA:3.40.50.2300 157 315 6.6E-20 T 13-10-2018 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 Pfam PF02073 Thermophilic metalloprotease (M29) 5 408 1.6E-178 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 Gene3D G3DSA:3.40.1830.10 1 180 5.8E-69 T 13-10-2018 IPR035097 Peptidase M29, N-terminal RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 SUPERFAMILY SSF144052 4 409 7.72E-156 T 13-10-2018 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 80 99 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 363 385 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 301 321 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 389 408 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 156 178 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 245 264 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 15 32 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_15970 1f34ffe1af1fbab28ad659ea70667d9d 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 324 345 1.9E-84 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 RA13_18195 444404e909f8ca5794652e58abcc2b71 46 Pfam PF14149 YhfH-like protein 5 40 1.5E-20 T 13-10-2018 IPR025432 YhfH-like protein RA13_21465 b2dee8c94f29cd26b9fdb623c96c052d 248 Pfam PF00881 Nitroreductase family 11 165 5.7E-21 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_21465 b2dee8c94f29cd26b9fdb623c96c052d 248 PIRSF PIRSF005426 1 247 7.4E-91 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 RA13_21465 b2dee8c94f29cd26b9fdb623c96c052d 248 Gene3D G3DSA:3.40.109.10 1 248 1.2E-79 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_21465 b2dee8c94f29cd26b9fdb623c96c052d 248 SUPERFAMILY SSF55469 1 246 1.02E-70 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_00740 144e96da7b9ab0902d900669086d935c 414 Pfam PF07075 Protein of unknown function (DUF1343) 57 414 6.3E-154 T 13-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 RA13_00740 144e96da7b9ab0902d900669086d935c 414 Gene3D G3DSA:3.40.50.12170 39 414 9.8E-161 T 13-10-2018 RA13_00740 144e96da7b9ab0902d900669086d935c 414 Gene3D G3DSA:3.90.1150.140 252 399 9.8E-161 T 13-10-2018 RA13_00740 144e96da7b9ab0902d900669086d935c 414 PIRSF PIRSF016719 1 414 4.0E-186 T 13-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 RA13_07010 a15631829dd7ebfbfba7e9160dcd8f66 154 Gene3D G3DSA:1.10.10.10 55 140 6.1E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07010 a15631829dd7ebfbfba7e9160dcd8f66 154 SUPERFAMILY SSF88659 74 142 3.18E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 SUPERFAMILY SSF48008 83 216 1.16E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 SUPERFAMILY SSF46785 14 81 4.78E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 SMART SM00345 19 77 4.6E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 75 1.5E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 Pfam PF07729 FCD domain 89 206 1.9E-23 T 13-10-2018 IPR011711 GntR, C-terminal RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 Gene3D G3DSA:1.20.120.530 81 221 2.6E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 2.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 2.6E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 Gene3D G3DSA:1.10.10.10 12 78 1.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_01910 0dc6239f7c082b027b360f4f5d435366 222 SMART SM00895 87 211 1.6E-12 T 13-10-2018 IPR011711 GntR, C-terminal RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 PRINTS PR00046 Major sigma-70 factor signature 188 196 2.8E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 PRINTS PR00046 Major sigma-70 factor signature 348 359 2.8E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 PRINTS PR00046 Major sigma-70 factor signature 164 177 2.8E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 PRINTS PR00046 Major sigma-70 factor signature 333 348 2.8E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 PRINTS PR00046 Major sigma-70 factor signature 312 324 2.8E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Pfam PF04539 Sigma-70 region 3 219 295 4.1E-33 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Gene3D G3DSA:1.10.220.120 14 74 6.3E-9 T 13-10-2018 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Gene3D G3DSA:1.10.601.10 100 135 7.0E-11 T 13-10-2018 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Gene3D G3DSA:1.10.601.10 136 212 3.5E-51 T 13-10-2018 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 138 361 1.0E-39 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 164 177 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Gene3D G3DSA:1.10.10.10 213 288 3.9E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Pfam PF03979 Sigma-70 factor, region 1.1 15 85 3.4E-15 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 SUPERFAMILY SSF88946 101 210 4.32E-53 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 SUPERFAMILY SSF88659 270 371 5.42E-30 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 9 373 34.049 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 SUPERFAMILY SSF88659 213 286 1.29E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Gene3D G3DSA:1.10.10.10 289 373 2.7E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Pfam PF04545 Sigma-70, region 4 308 361 5.1E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Pfam PF04542 Sigma-70 region 2 140 209 3.3E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 137 372 1.0E-125 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 333 359 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_09725 f5f4824e02a994ba1c6266bb216694af 373 Pfam PF00140 Sigma-70 factor, region 1.2 102 135 5.2E-16 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_08300 4ff46bd4df8c6313a252f97c2df09360 197 Gene3D G3DSA:1.10.357.10 59 197 3.2E-13 T 13-10-2018 RA13_08300 4ff46bd4df8c6313a252f97c2df09360 197 Gene3D G3DSA:1.10.10.60 8 58 2.9E-13 T 13-10-2018 RA13_08300 4ff46bd4df8c6313a252f97c2df09360 197 SUPERFAMILY SSF46689 12 84 3.94E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_08300 4ff46bd4df8c6313a252f97c2df09360 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 9.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_08300 4ff46bd4df8c6313a252f97c2df09360 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 9.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_08300 4ff46bd4df8c6313a252f97c2df09360 197 SUPERFAMILY SSF48498 89 196 1.01E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_08300 4ff46bd4df8c6313a252f97c2df09360 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 3.8E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_07720 48fb42c6dcc64f2312a3f30851b3ac61 265 Gene3D G3DSA:3.90.1200.10 79 259 4.0E-21 T 13-10-2018 RA13_07720 48fb42c6dcc64f2312a3f30851b3ac61 265 Pfam PF01636 Phosphotransferase enzyme family 17 218 1.6E-21 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RA13_07720 48fb42c6dcc64f2312a3f30851b3ac61 265 SUPERFAMILY SSF56112 2 228 2.08E-33 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 ProSitePatterns PS00885 EPSP synthase signature 2. 337 355 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 Gene3D G3DSA:3.65.10.10 9 421 5.0E-155 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 PIRSF PIRSF000505 1 428 3.9E-119 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 7 427 34.334 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 Gene3D G3DSA:3.65.10.10 19 227 5.0E-155 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 11 426 2.0E-131 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 ProSitePatterns PS00104 EPSP synthase signature 1. 85 99 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 5 421 8.6E-123 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RA13_11125 2bd9f2bfc2a19b61b61336a746ce3ebe 428 SUPERFAMILY SSF55205 4 426 1.28E-133 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RA13_20815 3aaeda54c577f381baa852b45441258b 254 Pfam PF12706 Beta-lactamase superfamily domain 20 217 1.0E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_20815 3aaeda54c577f381baa852b45441258b 254 SUPERFAMILY SSF56281 1 254 1.22E-17 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_20815 3aaeda54c577f381baa852b45441258b 254 Gene3D G3DSA:3.60.15.10 1 254 2.3E-66 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 SUPERFAMILY SSF52413 330 435 2.09E-21 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 Gene3D G3DSA:3.40.50.720 11 221 9.9E-60 T 13-10-2018 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 27 204 5.2E-41 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 SUPERFAMILY SSF48179 224 317 4.59E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 225 315 1.7E-28 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 PIRSF PIRSF500136 15 443 1.3E-138 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 PIRSF PIRSF000124 25 444 9.3E-60 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 27 429 7.8E-121 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 SUPERFAMILY SSF51735 27 218 1.06E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 SMART SM00984 337 433 4.0E-26 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 338 431 6.7E-20 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RA13_05480 d4f57ee64b7d266b94dd26ed5a1d4ced 444 Gene3D G3DSA:3.40.50.720 223 443 2.0E-56 T 13-10-2018 RA13_16520 9b750bd7ec6f3f6e07e2060504ad745d 294 SMART SM00559 52 181 3.0E-51 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RA13_16520 9b750bd7ec6f3f6e07e2060504ad745d 294 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 1 255 32.238 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RA13_16520 9b750bd7ec6f3f6e07e2060504ad745d 294 Pfam PF02735 Ku70/Ku80 beta-barrel domain 11 189 1.2E-41 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 RA13_16520 9b750bd7ec6f3f6e07e2060504ad745d 294 PIRSF PIRSF006493 1 291 2.7E-109 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RA13_16520 9b750bd7ec6f3f6e07e2060504ad745d 294 SUPERFAMILY SSF100939 2 260 4.51E-56 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RA13_16520 9b750bd7ec6f3f6e07e2060504ad745d 294 TIGRFAM TIGR02772 Ku_bact: Ku protein 1 257 2.7E-97 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type RA13_16520 9b750bd7ec6f3f6e07e2060504ad745d 294 Gene3D G3DSA:2.40.290.10 2 175 3.2E-20 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily RA13_16840 6662a75f52c706a5dc983e3b51264365 438 Gene3D G3DSA:1.20.1740.10 7 438 1.7E-94 T 13-10-2018 RA13_16840 6662a75f52c706a5dc983e3b51264365 438 Pfam PF13520 Amino acid permease 15 408 2.0E-58 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_16840 6662a75f52c706a5dc983e3b51264365 438 PIRSF PIRSF006060 1 438 3.2E-84 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 SUPERFAMILY SSF110849 23 125 6.8E-28 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 Pfam PF02195 ParB-like nuclease domain 32 121 7.8E-28 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 Gene3D G3DSA:1.10.10.2830 109 222 3.7E-35 T 13-10-2018 RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 27 208 3.3E-65 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 TIGRFAM TIGR04285 nucleoid_noc: nucleoid occlusion protein 29 283 4.4E-112 T 13-10-2018 IPR023705 Nucleoid occlusion protein RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 SUPERFAMILY SSF109709 116 221 8.11E-33 T 13-10-2018 RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 SMART SM00470 31 122 4.9E-36 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 Hamap MF_02015 Nucleoid occlusion protein [noc]. 3 283 38.996 T 13-10-2018 IPR023705 Nucleoid occlusion protein RA13_01845 2f91856dacfe7db7875d3ba311ae5157 283 Gene3D G3DSA:3.90.1530.30 44 108 4.0E-24 T 13-10-2018 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Gene3D G3DSA:2.40.50.140 60 135 2.5E-18 T 13-10-2018 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Gene3D G3DSA:2.40.50.140 136 203 1.5E-9 T 13-10-2018 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SUPERFAMILY SSF50249 208 625 3.03E-149 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SMART SM00316 626 708 1.4E-20 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SUPERFAMILY SSF50249 126 225 7.72E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 TIGRFAM TIGR02063 RNase_R: ribonuclease R 8 708 1.3E-288 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Hamap MF_01895 Ribonuclease R [rnr]. 25 708 62.458 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 58 708 9.5E-277 T 13-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SMART SM00955 248 578 3.0E-183 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Pfam PF08206 Ribonuclease B OB domain 148 201 1.5E-8 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Pfam PF08206 Ribonuclease B OB domain 74 132 2.5E-20 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 ProSitePatterns PS01175 Ribonuclease II family signature. 545 569 - T 13-10-2018 IPR022966 Ribonuclease II/R, conserved site RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SMART SM00357 73 133 2.7E-15 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SMART SM00357 138 202 4.6E-8 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SUPERFAMILY SSF50249 626 706 6.36E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Pfam PF00575 S1 RNA binding domain 625 707 3.5E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 SUPERFAMILY SSF50249 55 135 2.57E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Pfam PF00773 RNB domain 248 576 4.3E-117 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RA13_05630 b90f8124febbace4b2965e7e3d1103d1 779 Gene3D G3DSA:2.40.50.140 629 737 2.5E-27 T 13-10-2018 RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 SMART SM00100 9 129 3.3E-18 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 SUPERFAMILY SSF46785 147 234 2.73E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 SUPERFAMILY SSF51206 16 145 2.49E-30 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 Pfam PF00027 Cyclic nucleotide-binding domain 29 116 6.7E-16 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 Gene3D G3DSA:1.10.10.10 146 232 2.7E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 Gene3D G3DSA:2.60.120.10 11 145 2.1E-28 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 Pfam PF13545 Crp-like helix-turn-helix domain 151 222 2.0E-14 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 SMART SM00419 168 217 3.1E-10 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RA13_03805 1d2ae42120eac3b889377b9ed197a438 238 ProSitePatterns PS00042 Crp-type HTH domain signature. 176 199 - T 13-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 RA13_17560 ee1f4d04c44d508e4b9b773befcbbf13 192 SUPERFAMILY SSF55729 48 114 2.23E-7 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_17560 ee1f4d04c44d508e4b9b773befcbbf13 192 Gene3D G3DSA:3.40.630.30 1 139 7.2E-22 T 13-10-2018 RA13_17560 ee1f4d04c44d508e4b9b773befcbbf13 192 Pfam PF13508 Acetyltransferase (GNAT) domain 52 110 1.8E-6 T 13-10-2018 IPR000182 GNAT domain RA13_16185 75205130caa513da882ae68eed913858 303 Pfam PF00072 Response regulator receiver domain 178 297 2.0E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_16185 75205130caa513da882ae68eed913858 303 Gene3D G3DSA:3.40.50.2300 161 302 1.8E-24 T 13-10-2018 RA13_16185 75205130caa513da882ae68eed913858 303 Gene3D G3DSA:2.40.50.180 35 149 5.3E-35 T 13-10-2018 RA13_16185 75205130caa513da882ae68eed913858 303 SMART SM00260 14 149 1.2E-39 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RA13_16185 75205130caa513da882ae68eed913858 303 PIRSF PIRSF002867 2 303 3.7E-99 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV RA13_16185 75205130caa513da882ae68eed913858 303 SMART SM00448 175 297 2.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_16185 75205130caa513da882ae68eed913858 303 SUPERFAMILY SSF52172 173 297 1.57E-23 T 13-10-2018 IPR011006 CheY-like superfamily RA13_16185 75205130caa513da882ae68eed913858 303 SUPERFAMILY SSF50341 8 153 1.7E-33 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RA13_16185 75205130caa513da882ae68eed913858 303 Gene3D G3DSA:2.30.30.40 20 143 5.3E-35 T 13-10-2018 RA13_16185 75205130caa513da882ae68eed913858 303 Pfam PF01584 CheW-like domain 19 152 1.3E-34 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RA13_09080 b8ec6659d5c736d188f5fcbd5f4510e1 272 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 70 83 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RA13_09080 b8ec6659d5c736d188f5fcbd5f4510e1 272 Gene3D G3DSA:3.40.190.10 47 265 3.4E-84 T 13-10-2018 RA13_09080 b8ec6659d5c736d188f5fcbd5f4510e1 272 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 267 3.2E-60 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_09080 b8ec6659d5c736d188f5fcbd5f4510e1 272 SMART SM00079 46 268 2.3E-5 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 RA13_09080 b8ec6659d5c736d188f5fcbd5f4510e1 272 SUPERFAMILY SSF53850 5 267 6.21E-69 T 13-10-2018 RA13_09080 b8ec6659d5c736d188f5fcbd5f4510e1 272 Gene3D G3DSA:3.40.190.10 134 231 3.4E-84 T 13-10-2018 RA13_09080 b8ec6659d5c736d188f5fcbd5f4510e1 272 SMART SM00062 46 269 1.4E-84 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_10335 57ee236bfdc199869751a9f4c44e05cb 145 Pfam PF06491 Disulphide isomerase 8 142 6.2E-63 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family RA13_10335 57ee236bfdc199869751a9f4c44e05cb 145 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 8 142 1.2E-63 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family RA13_10335 57ee236bfdc199869751a9f4c44e05cb 145 Gene3D G3DSA:3.40.30.10 25 142 5.1E-55 T 13-10-2018 RA13_10455 74bf610cfee62008d4818bbca703ca7f 319 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 91 245 2.8E-13 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 RA13_10455 74bf610cfee62008d4818bbca703ca7f 319 PIRSF PIRSF000545 1 319 3.4E-139 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RA13_10455 74bf610cfee62008d4818bbca703ca7f 319 Hamap MF_00215 Pantothenate kinase [coaA]. 1 319 153.102 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RA13_10455 74bf610cfee62008d4818bbca703ca7f 319 SUPERFAMILY SSF52540 10 317 6.95E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10455 74bf610cfee62008d4818bbca703ca7f 319 Gene3D G3DSA:3.40.50.300 2 319 1.7E-93 T 13-10-2018 RA13_10455 74bf610cfee62008d4818bbca703ca7f 319 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 11 318 8.6E-162 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 SUPERFAMILY SSF46785 1 62 1.36E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 SMART SM00344 2 109 8.0E-22 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 1.5E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 1.5E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 1.5E-9 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 Pfam PF01037 Lrp/AsnC ligand binding domain 90 134 8.5E-8 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 SUPERFAMILY SSF54909 64 135 3.75E-8 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 Gene3D G3DSA:3.30.70.920 52 136 2.9E-12 T 13-10-2018 RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 Gene3D G3DSA:1.10.10.10 1 49 4.7E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20830 aafd3081dc1d4926ce39116aaf4d8fca 136 Pfam PF13404 AsnC-type helix-turn-helix domain 2 42 2.0E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_15310 7120ba526854dd688c5f6046b96b0904 447 SUPERFAMILY SSF48013 3 130 8.5E-38 T 13-10-2018 IPR035926 NusB-like superfamily RA13_15310 7120ba526854dd688c5f6046b96b0904 447 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 256 266 8.5E-30 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RA13_15310 7120ba526854dd688c5f6046b96b0904 447 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 227 241 8.5E-30 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RA13_15310 7120ba526854dd688c5f6046b96b0904 447 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 374 390 8.5E-30 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RA13_15310 7120ba526854dd688c5f6046b96b0904 447 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 428 445 8.5E-30 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RA13_15310 7120ba526854dd688c5f6046b96b0904 447 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 324 336 8.5E-30 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RA13_15310 7120ba526854dd688c5f6046b96b0904 447 Pfam PF01189 16S rRNA methyltransferase RsmB/F 246 443 2.0E-58 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 RA13_15310 7120ba526854dd688c5f6046b96b0904 447 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 323 334 - T 13-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 RA13_15310 7120ba526854dd688c5f6046b96b0904 447 Pfam PF01029 NusB family 5 128 6.7E-33 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RA13_15310 7120ba526854dd688c5f6046b96b0904 447 SUPERFAMILY SSF53335 139 446 8.67E-77 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_15310 7120ba526854dd688c5f6046b96b0904 447 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 447 2.4E-196 T 13-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 RA13_15310 7120ba526854dd688c5f6046b96b0904 447 Gene3D G3DSA:3.40.50.150 145 445 2.4E-85 T 13-10-2018 RA13_15310 7120ba526854dd688c5f6046b96b0904 447 Gene3D G3DSA:1.10.940.10 1 144 5.5E-42 T 13-10-2018 IPR035926 NusB-like superfamily RA13_19610 d1955b83aa31f85548f89792a59dab4d 228 SUPERFAMILY SSF52172 3 135 1.37E-27 T 13-10-2018 IPR011006 CheY-like superfamily RA13_19610 d1955b83aa31f85548f89792a59dab4d 228 SMART SM00448 2 115 3.6E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_19610 d1955b83aa31f85548f89792a59dab4d 228 Gene3D G3DSA:3.40.50.12740 2 217 9.0E-28 T 13-10-2018 RA13_19610 d1955b83aa31f85548f89792a59dab4d 228 PIRSF PIRSF006171 1 228 3.1E-77 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 RA13_19610 d1955b83aa31f85548f89792a59dab4d 228 Pfam PF00072 Response regulator receiver domain 4 114 6.7E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_19610 d1955b83aa31f85548f89792a59dab4d 228 Pfam PF08279 HTH domain 164 221 7.6E-5 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_21045 88dc3bc9691056757e21d3504138d7c7 121 SUPERFAMILY SSF56214 1 117 4.71E-37 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_21045 88dc3bc9691056757e21d3504138d7c7 121 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 118 1.2E-36 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 RA13_21045 88dc3bc9691056757e21d3504138d7c7 121 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 119 3.0E-45 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 RA13_21045 88dc3bc9691056757e21d3504138d7c7 121 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 113 5.6E-23 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_21045 88dc3bc9691056757e21d3504138d7c7 121 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 120 4.4E-50 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 RA13_21045 88dc3bc9691056757e21d3504138d7c7 121 Gene3D G3DSA:3.90.470.20 1 121 2.0E-42 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RA13_21045 88dc3bc9691056757e21d3504138d7c7 121 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 118 25.929 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 SUPERFAMILY SSF54810 393 513 5.49E-51 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 SUPERFAMILY SSF52402 188 406 9.26E-61 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 Pfam PF00117 Glutamine amidotransferase class-I 11 190 2.7E-45 T 13-10-2018 IPR017926 Glutamine amidotransferase RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 Pfam PF02540 NAD synthase 210 284 1.0E-5 T 13-10-2018 IPR022310 NAD/GMP synthase RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 Gene3D G3DSA:3.40.50.880 5 200 1.4E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 Gene3D G3DSA:3.30.300.10 394 513 1.4E-52 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00097 Anthranilate synthase component II signature 80 91 4.3E-6 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00097 Anthranilate synthase component II signature 168 181 4.3E-6 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00097 Anthranilate synthase component II signature 53 62 4.3E-6 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 50 64 2.7E-6 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 9 23 2.7E-6 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 80 96 2.7E-6 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 4.9E-8 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 4.9E-8 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 4.9E-8 T 13-10-2018 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 9 196 1.2E-87 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 Gene3D G3DSA:3.40.50.620 201 393 1.1E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 SUPERFAMILY SSF52317 7 201 1.94E-60 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 203 513 4.9E-160 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 6 513 55.67 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 RA13_20220 7e510f128d45fb7049575f9c2e805dff 513 Pfam PF00958 GMP synthase C terminal domain 421 512 6.8E-45 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 Gene3D G3DSA:2.40.10.10 112 228 4.6E-27 T 13-10-2018 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 SUPERFAMILY SSF50156 331 445 3.68E-22 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 Pfam PF13365 Trypsin-like peptidase domain 165 309 1.1E-31 T 13-10-2018 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 PRINTS PR00834 HtrA/DegQ protease family signature 198 218 3.6E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 PRINTS PR00834 HtrA/DegQ protease family signature 302 319 3.6E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 PRINTS PR00834 HtrA/DegQ protease family signature 394 406 3.6E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 PRINTS PR00834 HtrA/DegQ protease family signature 280 297 3.6E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 PRINTS PR00834 HtrA/DegQ protease family signature 177 189 3.6E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 PRINTS PR00834 HtrA/DegQ protease family signature 239 263 3.6E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 SMART SM00228 347 437 3.0E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 Gene3D G3DSA:2.40.10.10 230 346 2.2E-41 T 13-10-2018 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 SUPERFAMILY SSF50494 123 344 2.08E-56 T 13-10-2018 IPR009003 Peptidase S1, PA clan RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 Pfam PF13180 PDZ domain 347 446 3.4E-20 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_05960 6789810f848b76ec6cd9020b1ff7f20f 455 Gene3D G3DSA:2.30.42.10 347 454 1.2E-26 T 13-10-2018 RA13_01510 9b3937088eb7e912f162438db84e8394 186 Pfam PF13662 Toprim domain 4 71 3.1E-6 T 13-10-2018 IPR006171 TOPRIM domain RA13_01510 9b3937088eb7e912f162438db84e8394 186 Gene3D G3DSA:3.40.1360.20 1 117 1.2E-24 T 13-10-2018 RA13_01510 9b3937088eb7e912f162438db84e8394 186 Pfam PF13331 Domain of unknown function (DUF4093) 93 176 1.5E-27 T 13-10-2018 IPR025156 Ribonuclease M5, C-terminal domain RA13_01510 9b3937088eb7e912f162438db84e8394 186 Hamap MF_01469 Ribonuclease M5 [rnmV]. 3 178 32.09 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 RA13_01510 9b3937088eb7e912f162438db84e8394 186 TIGRFAM TIGR00334 5S_RNA_mat_M5: ribonuclease M5 2 177 3.9E-77 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 RA13_01510 9b3937088eb7e912f162438db84e8394 186 SUPERFAMILY SSF110455 1 117 6.28E-35 T 13-10-2018 RA13_01510 9b3937088eb7e912f162438db84e8394 186 SMART SM00493 4 77 1.1E-8 T 13-10-2018 IPR006171 TOPRIM domain RA13_12180 6fc85457571fa82b8455a67d118b7ef7 203 Gene3D G3DSA:3.40.1700.10 68 203 4.4E-47 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily RA13_12180 6fc85457571fa82b8455a67d118b7ef7 203 Pfam PF10372 Bacterial membrane-spanning protein N-terminus 3 70 2.0E-23 T 13-10-2018 IPR019457 Uncharacterised domain YojJ, N-terminal RA13_12180 6fc85457571fa82b8455a67d118b7ef7 203 SUPERFAMILY SSF143597 10 200 2.75E-49 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily RA13_12180 6fc85457571fa82b8455a67d118b7ef7 203 Hamap MF_00838 Diadenylate cyclase [dacB]. 15 201 35.257 T 13-10-2018 IPR034693 Diadenylate cyclase CdaS GO:0004016|GO:0006171 RA13_12180 6fc85457571fa82b8455a67d118b7ef7 203 PIRSF PIRSF004793 1 203 1.0E-61 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 RA13_12180 6fc85457571fa82b8455a67d118b7ef7 203 Gene3D G3DSA:1.10.287.770 1 67 1.0E-13 T 13-10-2018 RA13_12180 6fc85457571fa82b8455a67d118b7ef7 203 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 79 195 2.2E-37 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 33 338 4.9E-103 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 Gene3D G3DSA:2.115.10.20 1 356 6.3E-116 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 Gene3D G3DSA:2.60.120.560 357 479 7.8E-12 T 13-10-2018 RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 17 454 2.5E-179 T 13-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 SUPERFAMILY SSF49899 340 478 3.72E-19 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 SMART SM00640 33 444 4.6E-145 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 SUPERFAMILY SSF75005 26 338 9.58E-111 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 33 46 - T 13-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 RA13_03510 c74c0357e26bfeaf8141744c8adefc07 479 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 396 476 1.0E-10 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal RA13_15750 f4b112b06cc4ddd100750d269459e482 356 SUPERFAMILY SSF49503 127 280 9.06E-39 T 13-10-2018 IPR008972 Cupredoxin RA13_15750 f4b112b06cc4ddd100750d269459e482 356 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 174 228 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 SUPERFAMILY SSF46626 259 353 3.2E-17 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 Pfam PF00034 Cytochrome c 260 352 3.6E-12 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 SUPERFAMILY SSF81464 14 112 5.72E-18 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 48 106 1.4E-6 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 PRINTS PR01166 Cytochrome c oxidase subunit II signature 217 234 7.3E-5 T 13-10-2018 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 PRINTS PR01166 Cytochrome c oxidase subunit II signature 96 116 7.3E-5 T 13-10-2018 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 PRINTS PR01166 Cytochrome c oxidase subunit II signature 84 96 7.3E-5 T 13-10-2018 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 Gene3D G3DSA:2.60.40.2600 126 356 7.5E-63 T 13-10-2018 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 Gene3D G3DSA:1.10.287.90 25 115 7.7E-21 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 154 233 2.5E-11 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15750 f4b112b06cc4ddd100750d269459e482 356 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 31 244 7.3E-50 T 13-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 Gene3D G3DSA:3.40.50.150 66 256 2.0E-70 T 13-10-2018 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 SMART SM00138 1 254 7.0E-123 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 SUPERFAMILY SSF47757 3 66 1.44E-10 T 13-10-2018 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 Pfam PF03705 CheR methyltransferase, all-alpha domain 4 54 1.4E-11 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 Pfam PF01739 CheR methyltransferase, SAM binding domain 67 249 4.2E-65 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 PRINTS PR00996 Glutamate methyltransferase family signature 214 237 3.9E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 PRINTS PR00996 Glutamate methyltransferase family signature 195 209 3.9E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 PRINTS PR00996 Glutamate methyltransferase family signature 60 72 3.9E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 PRINTS PR00996 Glutamate methyltransferase family signature 128 144 3.9E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 PRINTS PR00996 Glutamate methyltransferase family signature 96 116 3.9E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 PRINTS PR00996 Glutamate methyltransferase family signature 23 36 3.9E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 RA13_11065 ce490f39ba0cce9c761ce9fbcea2b244 256 SUPERFAMILY SSF53335 67 238 5.0E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 Gene3D G3DSA:3.30.450.20 81 203 1.7E-20 T 13-10-2018 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 82 198 1.3E-17 T 13-10-2018 IPR000014 PAS domain RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 8.6E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 385 8.6E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 8.6E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 8.6E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 Gene3D G3DSA:3.30.565.10 272 424 9.1E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 SUPERFAMILY SSF47384 201 275 2.94E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 SMART SM00086 149 191 3.3E-4 T 13-10-2018 IPR001610 PAC motif RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 Gene3D G3DSA:1.10.287.130 204 271 1.5E-15 T 13-10-2018 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 SUPERFAMILY SSF55785 83 193 5.8E-16 T 13-10-2018 IPR035965 PAS domain superfamily RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 SMART SM00091 78 144 5.4E-6 T 13-10-2018 IPR000014 PAS domain RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 SUPERFAMILY SSF55874 276 424 1.83E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 Pfam PF00989 PAS fold 80 188 3.7E-17 T 13-10-2018 IPR013767 PAS fold GO:0006355 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 SMART SM00387 320 426 8.6E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 Pfam PF00512 His Kinase A (phospho-acceptor) domain 216 275 7.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 SMART SM00388 214 277 1.8E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RA13_15950 d0e073eb8cf994797ead5154230ae76c 428 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 425 7.0E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_09035 ea7ad5092a56cf28cc7f0434c24c7e09 380 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 193 212 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RA13_09035 ea7ad5092a56cf28cc7f0434c24c7e09 380 Gene3D G3DSA:1.10.260.50 15 278 4.8E-142 T 13-10-2018 RA13_09035 ea7ad5092a56cf28cc7f0434c24c7e09 380 Gene3D G3DSA:3.90.1150.10 4 370 4.8E-142 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_09035 ea7ad5092a56cf28cc7f0434c24c7e09 380 SUPERFAMILY SSF53383 3 376 9.14E-100 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_09035 ea7ad5092a56cf28cc7f0434c24c7e09 380 Pfam PF00266 Aminotransferase class-V 4 365 1.5E-81 T 13-10-2018 IPR000192 Aminotransferase class V domain RA13_09035 ea7ad5092a56cf28cc7f0434c24c7e09 380 Gene3D G3DSA:3.40.640.10 61 235 4.8E-142 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_09035 ea7ad5092a56cf28cc7f0434c24c7e09 380 PIRSF PIRSF005572 1 380 3.3E-125 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 Pfam PF00156 Phosphoribosyl transferase domain 276 382 1.8E-7 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 SUPERFAMILY SSF56235 12 237 5.15E-70 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 PIRSF PIRSF000485 8 473 1.3E-190 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 12 457 1.4E-173 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 Gene3D G3DSA:3.40.50.2020 271 435 1.6E-177 T 13-10-2018 RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 SUPERFAMILY SSF53271 247 469 3.28E-76 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 Gene3D G3DSA:3.60.20.10 12 458 1.6E-177 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 11 456 47.296 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RA13_20145 6a4be4478fc07d46e8880497deb7ac15 476 Pfam PF13522 Glutamine amidotransferase domain 69 205 2.4E-22 T 13-10-2018 RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 Gene3D G3DSA:3.40.50.300 1 83 1.7E-16 T 13-10-2018 RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 SUPERFAMILY SSF52540 4 209 2.67E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 Gene3D G3DSA:3.40.50.300 84 229 1.2E-30 T 13-10-2018 RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 Pfam PF00005 ABC transporter 310 437 2.8E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 Pfam PF00005 ABC transporter 21 134 5.8E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 SUPERFAMILY SSF52540 276 495 9.02E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 Gene3D G3DSA:3.40.50.300 238 512 2.2E-50 T 13-10-2018 RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 SMART SM00382 29 186 4.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 SMART SM00382 318 482 2.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_20630 3f3e6d8f4fdf183ce8bb810bdd9bf723 544 Pfam PF12848 ABC transporter 174 248 4.4E-11 T 13-10-2018 IPR032781 ABC-transporter extension domain RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 SMART SM00434 10 463 8.2E-267 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Gene3D G3DSA:3.30.1360.40 235 331 7.3E-198 T 13-10-2018 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Hamap MF_00937 DNA topoisomerase 4 subunit A [parC]. 6 802 33.263 T 13-10-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 SUPERFAMILY SSF56719 30 485 1.24E-170 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 SUPERFAMILY SSF101904 499 804 5.62E-96 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 TIGRFAM TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit 7 744 0.0 T 13-10-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Gene3D G3DSA:3.90.199.10 31 485 7.3E-198 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 798 1.6E-270 T 13-10-2018 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Gene3D G3DSA:2.120.10.90 499 806 1.8E-105 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 31 467 6.5E-153 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 549 598 2.1E-5 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 606 651 1.2E-7 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 656 696 2.0E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 507 519 6.9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 704 752 1.5E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RA13_12675 cbb36ec70777bc630f7f6a27f6e6b41f 806 Gene3D G3DSA:1.10.268.10 368 456 7.3E-198 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RA13_05285 9720cf89bbd3489eca4de7e5931d6500 490 SUPERFAMILY SSF53474 3 468 6.12E-132 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_05285 9720cf89bbd3489eca4de7e5931d6500 490 Gene3D G3DSA:3.40.50.1820 2 489 1.1E-175 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_05285 9720cf89bbd3489eca4de7e5931d6500 490 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 82 92 - T 13-10-2018 IPR019819 Carboxylesterase type B, conserved site RA13_05285 9720cf89bbd3489eca4de7e5931d6500 490 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 178 193 - T 13-10-2018 IPR019826 Carboxylesterase type B, active site RA13_05285 9720cf89bbd3489eca4de7e5931d6500 490 PRINTS PR00878 Cholinesterase signature 106 135 3.4E-7 T 13-10-2018 IPR000997 Cholinesterase GO:0004104 Reactome: R-HSA-112311|Reactome: R-HSA-1483191|Reactome: R-HSA-422085 RA13_05285 9720cf89bbd3489eca4de7e5931d6500 490 PRINTS PR00878 Cholinesterase signature 401 413 3.4E-7 T 13-10-2018 IPR000997 Cholinesterase GO:0004104 Reactome: R-HSA-112311|Reactome: R-HSA-1483191|Reactome: R-HSA-422085 RA13_05285 9720cf89bbd3489eca4de7e5931d6500 490 Pfam PF00135 Carboxylesterase family 3 474 6.6E-127 T 13-10-2018 IPR002018 Carboxylesterase, type B RA13_05250 0faf4a089aaa3273aa77af03a2a5086c 474 Pfam PF02435 Levansucrase/Invertase 40 470 1.6E-163 T 13-10-2018 IPR003469 Glycoside hydrolase, family 68 GO:0009758|GO:0050053 RA13_05250 0faf4a089aaa3273aa77af03a2a5086c 474 SUPERFAMILY SSF75005 36 473 3.0E-107 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_05250 0faf4a089aaa3273aa77af03a2a5086c 474 Gene3D G3DSA:2.115.10.20 29 468 2.0E-179 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_02440 81d5ab28cf97999b849e64925576141a 371 SUPERFAMILY SSF46689 268 343 8.36E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_02440 81d5ab28cf97999b849e64925576141a 371 Pfam PF13556 PucR C-terminal helix-turn-helix domain 309 364 3.6E-21 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RA13_02440 81d5ab28cf97999b849e64925576141a 371 Gene3D G3DSA:1.10.10.2840 242 370 3.8E-24 T 13-10-2018 RA13_02440 81d5ab28cf97999b849e64925576141a 371 Pfam PF05651 Putative sugar diacid recognition 4 137 3.8E-51 T 13-10-2018 IPR008599 Putative sugar diacid recognition RA13_14855 26b714b6efa814cd27f5625c35be581e 718 SUPERFAMILY SSF50447 391 474 4.35E-26 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Pfam PF11987 Translation-initiation factor 2 505 609 2.1E-38 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Gene3D G3DSA:2.40.30.10 391 508 2.3E-42 T 13-10-2018 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 SUPERFAMILY SSF52156 497 626 8.89E-41 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Gene3D G3DSA:3.40.50.300 217 390 3.7E-74 T 13-10-2018 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Pfam PF00009 Elongation factor Tu GTP binding domain 224 379 1.7E-35 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 135 717 5.0E-290 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Gene3D G3DSA:3.40.50.10050 513 620 2.7E-40 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 1.3E-12 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 144 193 2.0E-15 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal RA13_14855 26b714b6efa814cd27f5625c35be581e 718 ProSitePatterns PS01176 Initiation factor 2 signature. 670 692 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Gene3D G3DSA:1.10.10.2480 1 70 1.6E-14 T 13-10-2018 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 717 17.553 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 Gene3D G3DSA:2.40.30.10 621 718 9.6E-33 T 13-10-2018 RA13_14855 26b714b6efa814cd27f5625c35be581e 718 SUPERFAMILY SSF50447 620 717 1.04E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_14855 26b714b6efa814cd27f5625c35be581e 718 SUPERFAMILY SSF52540 213 392 2.51E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14855 26b714b6efa814cd27f5625c35be581e 718 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 222 378 1.2E-43 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 Pfam PF00155 Aminotransferase class I and II 104 410 1.0E-22 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 SUPERFAMILY SSF53383 101 458 8.12E-70 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 Gene3D G3DSA:3.40.640.10 94 452 1.2E-103 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 1.5E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 7.1E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 7.1E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 SMART SM00345 18 77 4.4E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 Gene3D G3DSA:1.10.10.10 6 78 8.2E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00555 c773f3ae1ec0474bdd96424f20bc1738 459 SUPERFAMILY SSF46785 8 86 6.86E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_06510 6fa90755040a7b4de8780098685863b1 311 SUPERFAMILY SSF52499 1 210 3.4E-66 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_06510 6fa90755040a7b4de8780098685863b1 311 Pfam PF00857 Isochorismatase family 31 203 2.1E-41 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RA13_06510 6fa90755040a7b4de8780098685863b1 311 Pfam PF00550 Phosphopantetheine attachment site 233 293 2.6E-8 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_06510 6fa90755040a7b4de8780098685863b1 311 Gene3D G3DSA:3.40.50.850 1 207 3.7E-78 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_06510 6fa90755040a7b4de8780098685863b1 311 SUPERFAMILY SSF47336 230 300 3.01E-10 T 13-10-2018 IPR036736 ACP-like superfamily RA13_06510 6fa90755040a7b4de8780098685863b1 311 Gene3D G3DSA:1.10.1200.10 228 301 1.8E-29 T 13-10-2018 IPR036736 ACP-like superfamily RA13_06510 6fa90755040a7b4de8780098685863b1 311 PRINTS PR01398 Isochorismatase signature 168 186 1.6E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_06510 6fa90755040a7b4de8780098685863b1 311 PRINTS PR01398 Isochorismatase signature 2 14 1.6E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_06510 6fa90755040a7b4de8780098685863b1 311 PRINTS PR01398 Isochorismatase signature 63 80 1.6E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_06510 6fa90755040a7b4de8780098685863b1 311 PRINTS PR01398 Isochorismatase signature 80 99 1.6E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_06510 6fa90755040a7b4de8780098685863b1 311 PRINTS PR01398 Isochorismatase signature 112 134 1.6E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_06510 6fa90755040a7b4de8780098685863b1 311 PRINTS PR01398 Isochorismatase signature 186 203 1.6E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_06510 6fa90755040a7b4de8780098685863b1 311 PIRSF PIRSF001111 1 305 1.4E-136 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_09935 4a7bd45a188335ce912dc0881e5cb34a 126 Gene3D G3DSA:3.40.30.10 4 125 1.0E-37 T 13-10-2018 RA13_09935 4a7bd45a188335ce912dc0881e5cb34a 126 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 115 1.9E-43 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR RA13_09935 4a7bd45a188335ce912dc0881e5cb34a 126 SUPERFAMILY SSF52833 4 115 1.43E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_09935 4a7bd45a188335ce912dc0881e5cb34a 126 Pfam PF03960 ArsC family 7 114 1.0E-20 T 13-10-2018 IPR006660 Arsenate reductase-like RA13_00775 29751b8e341a26843b62616b5de574ee 477 SUPERFAMILY SSF52091 395 475 1.1E-12 T 13-10-2018 IPR036513 STAS domain superfamily RA13_00775 29751b8e341a26843b62616b5de574ee 477 ProSitePatterns PS01130 SLC26A transporters signature. 43 64 - T 13-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 RA13_00775 29751b8e341a26843b62616b5de574ee 477 Gene3D G3DSA:3.30.750.24 388 477 3.1E-26 T 13-10-2018 IPR036513 STAS domain superfamily RA13_00775 29751b8e341a26843b62616b5de574ee 477 Pfam PF01740 STAS domain 399 475 1.3E-7 T 13-10-2018 IPR002645 STAS domain RA13_00775 29751b8e341a26843b62616b5de574ee 477 Pfam PF00916 Sulfate permease family 15 144 1.5E-26 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RA13_00775 29751b8e341a26843b62616b5de574ee 477 Pfam PF00916 Sulfate permease family 161 355 7.3E-32 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RA13_09765 16998ce0af6b50b6fb07d2bff1c86ab3 84 Pfam PF11116 Protein of unknown function (DUF2624) 1 83 1.5E-32 T 13-10-2018 IPR020277 Protein of unknown function DUF2624 RA13_09765 16998ce0af6b50b6fb07d2bff1c86ab3 84 ProDom PD060869 YQFT IG BH1387 1 68 1.0E-25 T 13-10-2018 IPR020277 Protein of unknown function DUF2624 RA13_11300 9d1bb0b64509f74ba87027a3061a1bab 124 Pfam PF08807 Bacterial domain of unknown function (DUF1798) 11 118 1.4E-32 T 13-10-2018 IPR014913 Protein of unknown function DUF1798 RA13_11300 9d1bb0b64509f74ba87027a3061a1bab 124 SUPERFAMILY SSF140415 6 122 9.81E-37 T 13-10-2018 IPR023351 YppE-like superfamily RA13_11300 9d1bb0b64509f74ba87027a3061a1bab 124 Gene3D G3DSA:1.20.120.440 3 124 2.1E-39 T 13-10-2018 IPR023351 YppE-like superfamily RA13_02955 fe5abbcc6b99b76f784a54b996bbcede 138 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 116 7.3E-23 T 13-10-2018 RA13_02955 fe5abbcc6b99b76f784a54b996bbcede 138 SUPERFAMILY SSF54593 1 134 2.42E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_02955 fe5abbcc6b99b76f784a54b996bbcede 138 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 2 130 5.1E-34 T 13-10-2018 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|MetaCyc: PWY-7854|Reactome: R-HSA-71032 RA13_02955 fe5abbcc6b99b76f784a54b996bbcede 138 Gene3D G3DSA:3.10.180.10 1 131 1.2E-36 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_07470 6e4ccfadd0424f021c61cc34704ab559 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 1.8E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_07470 6e4ccfadd0424f021c61cc34704ab559 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 37 52 1.8E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_07470 6e4ccfadd0424f021c61cc34704ab559 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 198 212 1.8E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_07470 6e4ccfadd0424f021c61cc34704ab559 259 SUPERFAMILY SSF53474 6 257 5.68E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_07470 6e4ccfadd0424f021c61cc34704ab559 259 Pfam PF12146 Serine aminopeptidase, S33 8 243 2.6E-56 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RA13_07470 6e4ccfadd0424f021c61cc34704ab559 259 Gene3D G3DSA:3.40.50.1820 1 258 3.0E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_17900 41cabb6a9edb2401bdfc14de8c5c9d74 455 Pfam PF01554 MatE 252 413 1.4E-33 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_17900 41cabb6a9edb2401bdfc14de8c5c9d74 455 Pfam PF01554 MatE 27 187 5.2E-32 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_17900 41cabb6a9edb2401bdfc14de8c5c9d74 455 PIRSF PIRSF006603 7 455 2.0E-82 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_17900 41cabb6a9edb2401bdfc14de8c5c9d74 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 27 426 1.4E-59 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_02170 97330886aa236d6fbc26771fed00286c 264 Pfam PF00753 Metallo-beta-lactamase superfamily 12 218 4.5E-28 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_02170 97330886aa236d6fbc26771fed00286c 264 Gene3D G3DSA:3.60.15.10 8 250 3.5E-40 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_02170 97330886aa236d6fbc26771fed00286c 264 SMART SM00849 13 218 8.2E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_02170 97330886aa236d6fbc26771fed00286c 264 SUPERFAMILY SSF56281 1 246 2.36E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_13465 42faa584822828205871f25fba3d8183 133 Gene3D G3DSA:1.20.225.10 50 110 7.9E-16 T 13-10-2018 IPR009086 Bacteriocin AS-48 RA13_13465 42faa584822828205871f25fba3d8183 133 Pfam PF09221 Bacteriocin class IId cyclical uberolysin-like 53 107 3.5E-6 T 13-10-2018 IPR020038 Circular bacteriocin, circularin A/uberolysin family RA13_02555 81adbabc08b2ca65002e6c094997f859 310 Pfam PF00248 Aldo/keto reductase family 15 308 1.1E-74 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_02555 81adbabc08b2ca65002e6c094997f859 310 PRINTS PR00069 Aldo-keto reductase signature 140 157 1.3E-12 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_02555 81adbabc08b2ca65002e6c094997f859 310 PRINTS PR00069 Aldo-keto reductase signature 44 68 1.3E-12 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_02555 81adbabc08b2ca65002e6c094997f859 310 PRINTS PR00069 Aldo-keto reductase signature 109 127 1.3E-12 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_02555 81adbabc08b2ca65002e6c094997f859 310 SUPERFAMILY SSF51430 1 309 2.36E-96 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_02555 81adbabc08b2ca65002e6c094997f859 310 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 140 157 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_02555 81adbabc08b2ca65002e6c094997f859 310 Gene3D G3DSA:3.20.20.100 1 310 2.7E-127 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_03635 553e73df3262997cff8ce5a6585fbb7a 323 PIRSF PIRSF000428 1 323 6.6E-110 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RA13_03635 553e73df3262997cff8ce5a6585fbb7a 323 Pfam PF01515 Phosphate acetyl/butaryl transferase 6 319 1.8E-131 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RA13_03635 553e73df3262997cff8ce5a6585fbb7a 323 Gene3D G3DSA:3.40.50.10950 18 319 6.2E-135 T 13-10-2018 RA13_03635 553e73df3262997cff8ce5a6585fbb7a 323 Gene3D G3DSA:3.40.50.10750 142 295 6.2E-135 T 13-10-2018 RA13_03635 553e73df3262997cff8ce5a6585fbb7a 323 SUPERFAMILY SSF53659 6 322 1.52E-93 T 13-10-2018 RA13_03635 553e73df3262997cff8ce5a6585fbb7a 323 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 19 319 3.8E-134 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RA13_19910 84756439ca2fe832cd8e07a821757829 375 SMART SM00342 284 366 1.3E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_19910 84756439ca2fe832cd8e07a821757829 375 Gene3D G3DSA:1.10.10.60 314 371 9.4E-18 T 13-10-2018 RA13_19910 84756439ca2fe832cd8e07a821757829 375 SMART SM00448 2 116 5.4E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_19910 84756439ca2fe832cd8e07a821757829 375 Pfam PF12833 Helix-turn-helix domain 290 367 2.6E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_19910 84756439ca2fe832cd8e07a821757829 375 Pfam PF00072 Response regulator receiver domain 4 116 5.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_19910 84756439ca2fe832cd8e07a821757829 375 SUPERFAMILY SSF46689 317 370 1.21E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_19910 84756439ca2fe832cd8e07a821757829 375 Gene3D G3DSA:3.40.50.2300 1 139 1.7E-32 T 13-10-2018 RA13_19910 84756439ca2fe832cd8e07a821757829 375 Gene3D G3DSA:1.10.10.60 259 313 7.0E-12 T 13-10-2018 RA13_19910 84756439ca2fe832cd8e07a821757829 375 SUPERFAMILY SSF52172 1 148 6.97E-32 T 13-10-2018 IPR011006 CheY-like superfamily RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 SUPERFAMILY SSF54534 83 153 2.09E-15 T 13-10-2018 RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 153 8.2E-19 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 SUPERFAMILY SSF46557 4 77 5.36E-14 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 Gene3D G3DSA:3.10.50.30 80 150 1.5E-20 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 Pfam PF03449 Transcription elongation factor, N-terminal 6 75 1.1E-14 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 Gene3D G3DSA:1.10.287.180 2 76 2.3E-16 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 PIRSF PIRSF006092 1 154 5.0E-37 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RA13_13125 b781152fa3418b6c51858cb2c0b74ada 154 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RA13_20860 58cb1e6d56ea8c1c9473ab25f9f87e0f 276 Pfam PF01522 Polysaccharide deacetylase 77 184 6.9E-26 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_20860 58cb1e6d56ea8c1c9473ab25f9f87e0f 276 SUPERFAMILY SSF88713 78 269 1.2E-45 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_20860 58cb1e6d56ea8c1c9473ab25f9f87e0f 276 Gene3D G3DSA:3.20.20.370 43 273 5.6E-54 T 13-10-2018 RA13_11785 a967abe850426a949bbb1e389b358d02 106 ProDom PD030115 YODL GK1575 3 106 2.0E-46 T 13-10-2018 RA13_11785 a967abe850426a949bbb1e389b358d02 106 Pfam PF14191 YodL-like 27 89 8.7E-7 T 13-10-2018 IPR025923 YodL-like RA13_10665 ed36812affa164c52101540154b6827b 493 PIRSF PIRSF005690 6 493 9.8E-148 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 RA13_10665 ed36812affa164c52101540154b6827b 493 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 28 479 1.5E-152 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 RA13_21880 3f797932cdc54930fa6cd0d15a41103a 263 Pfam PF01261 Xylose isomerase-like TIM barrel 20 217 2.6E-26 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RA13_21880 3f797932cdc54930fa6cd0d15a41103a 263 Gene3D G3DSA:3.20.20.150 1 260 1.0E-55 T 13-10-2018 RA13_21880 3f797932cdc54930fa6cd0d15a41103a 263 SUPERFAMILY SSF51658 1 247 4.19E-42 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_18340 8cefcbf9d3718b379a8d7ca72ea14310 284 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 35 116 1.8E-5 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RA13_18340 8cefcbf9d3718b379a8d7ca72ea14310 284 Pfam PF13616 PPIC-type PPIASE domain 137 226 3.9E-25 T 13-10-2018 RA13_18340 8cefcbf9d3718b379a8d7ca72ea14310 284 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 163 183 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 RA13_18340 8cefcbf9d3718b379a8d7ca72ea14310 284 Gene3D G3DSA:3.10.50.40 134 226 1.6E-38 T 13-10-2018 RA13_18340 8cefcbf9d3718b379a8d7ca72ea14310 284 Hamap MF_01145 Foldase protein PrsA [prsA]. 2 280 22.002 T 13-10-2018 IPR023059 Foldase protein PrsA GO:0003755 RA13_18340 8cefcbf9d3718b379a8d7ca72ea14310 284 SUPERFAMILY SSF54534 119 224 1.77E-32 T 13-10-2018 RA13_18340 8cefcbf9d3718b379a8d7ca72ea14310 284 SUPERFAMILY SSF109998 27 164 1.57E-17 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 Gene3D G3DSA:3.40.50.2300 95 361 4.0E-100 T 13-10-2018 RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 6.7E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 Gene3D G3DSA:3.40.50.2300 198 366 4.0E-100 T 13-10-2018 RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 SUPERFAMILY SSF46785 15 84 1.8E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 5.2E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 5.2E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 Gene3D G3DSA:1.10.10.10 13 81 3.8E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 SMART SM00345 21 80 4.0E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 SUPERFAMILY SSF53822 93 370 5.35E-64 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_05435 311d876d74bd0ee438888147a8e96fd0 374 Pfam PF13377 Periplasmic binding protein-like domain 206 369 1.6E-33 T 13-10-2018 RA13_03150 02a685f8294a30c75ab68bd52ff2eed3 106 Pfam PF17280 Family of unknown function (DUF5345) 10 85 1.6E-19 T 13-10-2018 IPR035238 Protein of unknown function DUF5345 RA13_03150 02a685f8294a30c75ab68bd52ff2eed3 106 ProDom PD070249 YXLC MEMBRANE TRANSMEMBRANE 9 97 5.0E-22 T 13-10-2018 IPR035238 Protein of unknown function DUF5345 RA13_15235 0e69c6a63d72f53b0dceaf466f49fff9 332 PIRSF PIRSF002465 1 332 5.9E-133 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 RA13_15235 0e69c6a63d72f53b0dceaf466f49fff9 332 SUPERFAMILY SSF53659 1 327 1.77E-108 T 13-10-2018 RA13_15235 0e69c6a63d72f53b0dceaf466f49fff9 332 Gene3D G3DSA:3.40.718.10 1 332 3.5E-147 T 13-10-2018 RA13_15235 0e69c6a63d72f53b0dceaf466f49fff9 332 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 329 6.7E-149 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 RA13_15235 0e69c6a63d72f53b0dceaf466f49fff9 332 Pfam PF02504 Fatty acid synthesis protein 1 318 5.0E-135 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 RA13_15235 0e69c6a63d72f53b0dceaf466f49fff9 332 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 332 153.947 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 RA13_07330 ac631374f9490cc848a97eec3bd482fe 250 Gene3D G3DSA:3.40.50.300 3 245 8.1E-66 T 13-10-2018 RA13_07330 ac631374f9490cc848a97eec3bd482fe 250 SUPERFAMILY SSF52540 4 225 2.66E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07330 ac631374f9490cc848a97eec3bd482fe 250 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_07330 ac631374f9490cc848a97eec3bd482fe 250 SMART SM00382 28 226 2.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_07330 ac631374f9490cc848a97eec3bd482fe 250 Pfam PF00005 ABC transporter 19 164 1.3E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_10610 4a6663287ef58443b345850d80a12a64 271 Pfam PF01048 Phosphorylase superfamily 21 268 7.3E-57 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RA13_10610 4a6663287ef58443b345850d80a12a64 271 Gene3D G3DSA:3.40.50.1580 1 270 3.2E-116 T 13-10-2018 RA13_10610 4a6663287ef58443b345850d80a12a64 271 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 21 267 1.0E-110 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 RA13_10610 4a6663287ef58443b345850d80a12a64 271 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 74 115 - T 13-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 RA13_10610 4a6663287ef58443b345850d80a12a64 271 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 21 268 4.7E-127 T 13-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 RA13_10610 4a6663287ef58443b345850d80a12a64 271 PIRSF PIRSF000477 1 270 9.2E-126 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 RA13_10610 4a6663287ef58443b345850d80a12a64 271 SUPERFAMILY SSF53167 3 270 1.7E-98 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RA13_05675 054d0a36e25b5a934073028e6ac9f4dd 223 Pfam PF13462 Thioredoxin 47 217 1.9E-37 T 13-10-2018 IPR012336 Thioredoxin-like fold RA13_05675 054d0a36e25b5a934073028e6ac9f4dd 223 SUPERFAMILY SSF52833 40 216 8.07E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_05675 054d0a36e25b5a934073028e6ac9f4dd 223 Gene3D G3DSA:3.40.30.10 29 223 3.0E-60 T 13-10-2018 RA13_21865 dbcf655ac8ffb8b4bacb7e9057eb941c 318 Pfam PF05448 Acetyl xylan esterase (AXE1) 1 315 9.1E-139 T 13-10-2018 IPR008391 Acetyl xylan esterase RA13_21865 dbcf655ac8ffb8b4bacb7e9057eb941c 318 Gene3D G3DSA:3.40.50.1820 1 318 1.5E-100 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21865 dbcf655ac8ffb8b4bacb7e9057eb941c 318 SUPERFAMILY SSF53474 4 317 5.59E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_16650 dd0d54318bfde9e7c0fceb0d0faed35c 156 Gene3D G3DSA:3.40.140.10 1 156 2.8E-68 T 13-10-2018 RA13_16650 dd0d54318bfde9e7c0fceb0d0faed35c 156 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 101 2.1E-27 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RA13_16650 dd0d54318bfde9e7c0fceb0d0faed35c 156 SUPERFAMILY SSF53927 2 147 2.3E-46 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RA13_16650 dd0d54318bfde9e7c0fceb0d0faed35c 156 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RA13_05330 74b50f1c376a44607d43be06689d9fef 345 Gene3D G3DSA:3.90.550.10 1 253 1.9E-58 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_05330 74b50f1c376a44607d43be06689d9fef 345 Pfam PF00535 Glycosyl transferase family 2 7 170 1.8E-38 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_05330 74b50f1c376a44607d43be06689d9fef 345 SUPERFAMILY SSF53448 4 242 6.14E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04655 fd21eb561a3b40904cdc27729bd57e96 385 Gene3D G3DSA:3.40.50.11820 89 373 1.1E-56 T 13-10-2018 RA13_04655 fd21eb561a3b40904cdc27729bd57e96 385 SUPERFAMILY SSF53756 88 382 2.2E-25 T 13-10-2018 RA13_04655 fd21eb561a3b40904cdc27729bd57e96 385 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 34 381 1.5E-82 T 13-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 RA13_04655 fd21eb561a3b40904cdc27729bd57e96 385 Gene3D G3DSA:3.40.50.12580 202 368 1.1E-56 T 13-10-2018 RA13_16805 624bfcc9c9f6e89db497ac8b0301d08d 274 Gene3D G3DSA:3.30.1360.130 210 274 3.5E-32 T 13-10-2018 RA13_16805 624bfcc9c9f6e89db497ac8b0301d08d 274 SUPERFAMILY SSF63992 1 274 2.48E-100 T 13-10-2018 IPR036177 Peptidase M55, D-aminopeptidase superfamily RA13_16805 624bfcc9c9f6e89db497ac8b0301d08d 274 PIRSF PIRSF015853 1 271 5.7E-106 T 13-10-2018 IPR007035 Peptidase M55, D-aminopeptidase RA13_16805 624bfcc9c9f6e89db497ac8b0301d08d 274 Gene3D G3DSA:3.40.50.10780 1 209 5.6E-77 T 13-10-2018 IPR027476 D-aminopeptidase, N-terminal RA13_16805 624bfcc9c9f6e89db497ac8b0301d08d 274 Pfam PF04951 D-aminopeptidase 1 262 3.1E-92 T 13-10-2018 IPR007035 Peptidase M55, D-aminopeptidase RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 Gene3D G3DSA:2.40.50.100 1 103 1.2E-26 T 13-10-2018 RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 SUPERFAMILY SSF52777 191 411 5.34E-83 T 13-10-2018 RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 Pfam PF02817 e3 binding domain 117 150 2.1E-13 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 SUPERFAMILY SSF47005 109 154 6.67E-12 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 Pfam PF00364 Biotin-requiring enzyme 5 77 3.5E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 Gene3D G3DSA:4.10.320.10 104 155 1.3E-16 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 Gene3D G3DSA:3.30.559.10 173 419 1.2E-98 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 SUPERFAMILY SSF51230 2 93 3.93E-25 T 13-10-2018 IPR011053 Single hybrid motif RA13_10320 30eecefd348620f4449fa65eb082a6ec 419 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 190 413 3.6E-83 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RA13_18745 32a20b6d777bf2ba9510bb2e369cdfd2 131 ProDom PD081567 YHCU 8 116 7.0E-44 T 13-10-2018 IPR020355 Uncharacterised protein family YhcU RA13_18745 32a20b6d777bf2ba9510bb2e369cdfd2 131 Pfam PF17326 Family of unknown function (DUF5365) 8 119 2.4E-38 T 13-10-2018 IPR020355 Uncharacterised protein family YhcU RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 Gene3D G3DSA:3.40.50.300 132 414 1.4E-122 T 13-10-2018 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 Gene3D G3DSA:1.10.720.10 1 48 8.2E-22 T 13-10-2018 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 158 362 3.5E-19 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 SUPERFAMILY SSF52540 92 370 3.58E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 416 222.032 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 Gene3D G3DSA:2.40.50.140 50 125 9.2E-29 T 13-10-2018 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 SMART SM00357 55 120 7.8E-20 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 SUPERFAMILY SSF68912 5 49 2.55E-10 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 Pfam PF07498 Rho termination factor, N-terminal domain 9 49 8.4E-15 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 SMART SM00959 8 50 2.7E-14 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 SMART SM00382 169 354 2.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 SUPERFAMILY SSF50249 52 127 4.57E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 Pfam PF07497 Rho termination factor, RNA-binding domain 54 127 3.3E-31 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 RA13_03920 78b299ff1b82ae6c61825a47fdb1d691 427 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 414 5.4E-207 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RA13_01895 5bd8aa11bd786333a4dbee777ede2285 171 Hamap MF_00984 Single-stranded DNA-binding protein. 2 107 36.804 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RA13_01895 5bd8aa11bd786333a4dbee777ede2285 171 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 171 2.1E-53 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RA13_01895 5bd8aa11bd786333a4dbee777ede2285 171 Pfam PF00436 Single-strand binding protein family 2 103 4.7E-38 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RA13_01895 5bd8aa11bd786333a4dbee777ede2285 171 SUPERFAMILY SSF50249 1 171 1.95E-57 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_01895 5bd8aa11bd786333a4dbee777ede2285 171 Gene3D G3DSA:2.40.50.140 1 109 1.8E-46 T 13-10-2018 RA13_18410 d527fbe77ae5ed18f8dc11d7a6d00bbf 288 SUPERFAMILY SSF56784 3 272 9.27E-52 T 13-10-2018 IPR036412 HAD-like superfamily RA13_18410 d527fbe77ae5ed18f8dc11d7a6d00bbf 288 Gene3D G3DSA:3.30.1240.10 83 195 5.7E-86 T 13-10-2018 RA13_18410 d527fbe77ae5ed18f8dc11d7a6d00bbf 288 Gene3D G3DSA:3.40.50.1000 6 264 5.7E-86 T 13-10-2018 IPR023214 HAD superfamily RA13_18410 d527fbe77ae5ed18f8dc11d7a6d00bbf 288 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 266 8.7E-51 T 13-10-2018 RA13_06535 4dc058e179cd806ed0ba8cafed8c49fb 409 Gene3D G3DSA:3.30.450.40 5 156 3.1E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_06535 4dc058e179cd806ed0ba8cafed8c49fb 409 Pfam PF06018 CodY GAF-like domain 16 157 6.1E-8 T 13-10-2018 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 RA13_06535 4dc058e179cd806ed0ba8cafed8c49fb 409 Pfam PF13556 PucR C-terminal helix-turn-helix domain 346 403 4.2E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RA13_06535 4dc058e179cd806ed0ba8cafed8c49fb 409 Gene3D G3DSA:1.10.10.2840 275 408 9.7E-20 T 13-10-2018 RA13_03885 1ed64ab985a281931dd099e132c136c3 535 SUPERFAMILY SSF52540 1 270 1.9E-127 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03885 1ed64ab985a281931dd099e132c136c3 535 TIGRFAM TIGR00337 PyrG: CTP synthase 1 527 1.3E-269 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RA13_03885 1ed64ab985a281931dd099e132c136c3 535 Gene3D G3DSA:3.40.50.300 1 286 1.7E-136 T 13-10-2018 RA13_03885 1ed64ab985a281931dd099e132c136c3 535 Pfam PF00117 Glutamine amidotransferase class-I 302 525 6.3E-59 T 13-10-2018 IPR017926 Glutamine amidotransferase RA13_03885 1ed64ab985a281931dd099e132c136c3 535 Hamap MF_01227 CTP synthase [pyrG]. 2 532 53.043 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RA13_03885 1ed64ab985a281931dd099e132c136c3 535 SUPERFAMILY SSF52317 290 531 1.03E-83 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_03885 1ed64ab985a281931dd099e132c136c3 535 Gene3D G3DSA:3.40.50.880 287 535 2.4E-103 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_03885 1ed64ab985a281931dd099e132c136c3 535 Pfam PF06418 CTP synthase N-terminus 3 267 3.7E-131 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RA13_14170 1dc73400b5cb915900bbc9a87adc89a1 63 Gene3D G3DSA:2.40.50.280 1 63 7.2E-34 T 13-10-2018 IPR037261 YonK superfamily RA13_14170 1dc73400b5cb915900bbc9a87adc89a1 63 Pfam PF09642 YonK protein 2 63 3.6E-45 T 13-10-2018 IPR018600 Bacillus phage SPbeta, YonK RA13_14170 1dc73400b5cb915900bbc9a87adc89a1 63 SUPERFAMILY SSF160570 2 63 1.7E-37 T 13-10-2018 IPR037261 YonK superfamily RA13_03845 36f415f32fefd4bb3e153542e4219954 574 Pfam PF00005 ABC transporter 349 498 5.3E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_03845 36f415f32fefd4bb3e153542e4219954 574 Gene3D G3DSA:3.40.50.300 318 571 2.8E-93 T 13-10-2018 RA13_03845 36f415f32fefd4bb3e153542e4219954 574 Pfam PF00664 ABC transporter transmembrane region 17 286 2.4E-60 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_03845 36f415f32fefd4bb3e153542e4219954 574 SUPERFAMILY SSF52540 324 569 1.22E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03845 36f415f32fefd4bb3e153542e4219954 574 SMART SM00382 358 544 7.5E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03845 36f415f32fefd4bb3e153542e4219954 574 SUPERFAMILY SSF90123 4 319 9.81E-77 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_03845 36f415f32fefd4bb3e153542e4219954 574 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_03845 36f415f32fefd4bb3e153542e4219954 574 Gene3D G3DSA:1.20.1560.10 1 315 3.9E-81 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 9 92 27.342 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 SUPERFAMILY SSF110324 10 91 2.02E-32 T 13-10-2018 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 Pfam PF01016 Ribosomal L27 protein 10 89 4.3E-35 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 PRINTS PR00063 Ribosomal protein L27 signature 37 61 5.1E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 PRINTS PR00063 Ribosomal protein L27 signature 12 36 5.1E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 PRINTS PR00063 Ribosomal protein L27 signature 62 86 5.1E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 36 77 3.0E-17 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 Gene3D G3DSA:2.40.50.100 28 93 4.0E-26 T 13-10-2018 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 TIGRFAM TIGR00062 L27: ribosomal protein bL27 9 89 4.1E-41 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08765 4c74638df50805e1980e6ef7ce4e84e0 94 ProSitePatterns PS00831 Ribosomal protein L27 signature. 42 56 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_10450 c6b49e0cb8acd177fd5196881c3a5ce3 99 Gene3D G3DSA:3.40.50.1100 1 98 5.0E-20 T 13-10-2018 RA13_11735 c0ec941402dae578b2a2253a14d652a0 217 Gene3D G3DSA:3.40.1080.10 5 215 3.7E-86 T 13-10-2018 RA13_11735 c0ec941402dae578b2a2253a14d652a0 217 SMART SM00882 9 205 9.2E-59 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_11735 c0ec941402dae578b2a2253a14d652a0 217 Pfam PF01144 Coenzyme A transferase 11 204 1.2E-35 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_11735 c0ec941402dae578b2a2253a14d652a0 217 SUPERFAMILY SSF100950 7 214 9.07E-63 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_11735 c0ec941402dae578b2a2253a14d652a0 217 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 212 3.7E-90 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 RA13_06405 8c932b7ed425185542ad48ce6186ba3b 404 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 6 403 1.9E-145 T 13-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 RA13_06405 8c932b7ed425185542ad48ce6186ba3b 404 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 6.8E-24 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RA13_06405 8c932b7ed425185542ad48ce6186ba3b 404 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 194 403 2.9E-76 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RA13_18935 10c47a40f74cfd9fcda440d88c4feadb 278 SUPERFAMILY SSF161098 76 257 4.32E-31 T 13-10-2018 IPR035906 MetI-like superfamily RA13_18935 10c47a40f74cfd9fcda440d88c4feadb 278 Gene3D G3DSA:1.10.3720.10 73 270 9.3E-23 T 13-10-2018 IPR035906 MetI-like superfamily RA13_18935 10c47a40f74cfd9fcda440d88c4feadb 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 270 5.8E-29 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 5 430 6.9E-225 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 Pfam PF02040 Arsenical pump membrane protein 6 428 3.4E-245 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 180 203 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 281 305 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 104 128 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 147 171 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 220 245 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 400 424 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 367 392 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_20705 1e8089a0dd4b35731dca94a8762bf56b 432 PRINTS PR00758 Arsenical pump membrane protein signature 326 348 2.5E-114 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 RA13_12555 57219a688cb779408c90ac21be5f111a 494 SUPERFAMILY SSF56601 38 492 1.34E-97 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_12555 57219a688cb779408c90ac21be5f111a 494 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 67 472 1.6E-142 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_12555 57219a688cb779408c90ac21be5f111a 494 Gene3D G3DSA:3.40.710.10 284 494 4.0E-54 T 13-10-2018 RA13_12555 57219a688cb779408c90ac21be5f111a 494 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 39 493 8.5E-151 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_12555 57219a688cb779408c90ac21be5f111a 494 Gene3D G3DSA:3.50.80.20 104 196 1.3E-24 T 13-10-2018 RA13_12555 57219a688cb779408c90ac21be5f111a 494 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 80 99 9.7E-31 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_12555 57219a688cb779408c90ac21be5f111a 494 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 450 463 9.7E-31 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_12555 57219a688cb779408c90ac21be5f111a 494 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 311 333 9.7E-31 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_12555 57219a688cb779408c90ac21be5f111a 494 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 368 382 9.7E-31 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_12555 57219a688cb779408c90ac21be5f111a 494 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 383 397 9.7E-31 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Gene3D G3DSA:3.30.1330.10 49 197 3.2E-136 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Pfam PF00586 AIR synthase related protein, N-terminal domain 89 194 1.7E-25 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Pfam PF00586 AIR synthase related protein, N-terminal domain 445 562 4.4E-25 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RA13_20150 edd8d81f4851b3b9603f04c091300340 742 SUPERFAMILY SSF56042 572 738 2.09E-35 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Gene3D G3DSA:3.90.650.10 570 740 1.3E-38 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_20150 edd8d81f4851b3b9603f04c091300340 742 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 24 737 0.0 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Gene3D G3DSA:3.30.1330.10 391 565 2.7E-63 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 742 329.493 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Gene3D G3DSA:3.90.650.10 35 362 3.2E-136 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Pfam PF02769 AIR synthase related protein, C-terminal domain 207 357 9.0E-32 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RA13_20150 edd8d81f4851b3b9603f04c091300340 742 Pfam PF02769 AIR synthase related protein, C-terminal domain 576 709 1.2E-13 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RA13_20150 edd8d81f4851b3b9603f04c091300340 742 SUPERFAMILY SSF55326 18 201 7.48E-52 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20150 edd8d81f4851b3b9603f04c091300340 742 PIRSF PIRSF001587 8 741 0.0 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20150 edd8d81f4851b3b9603f04c091300340 742 SUPERFAMILY SSF55326 400 569 1.07E-57 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20150 edd8d81f4851b3b9603f04c091300340 742 SUPERFAMILY SSF56042 204 430 3.89E-57 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_12450 716eb013e85fc0b5d2e816420674dd76 122 Gene3D G3DSA:1.10.10.10 1 122 1.1E-49 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_12450 716eb013e85fc0b5d2e816420674dd76 122 SUPERFAMILY SSF46785 7 121 1.24E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_12450 716eb013e85fc0b5d2e816420674dd76 122 PIRSF PIRSF021424 1 122 2.3E-76 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 RA13_12450 716eb013e85fc0b5d2e816420674dd76 122 Pfam PF02334 Replication terminator protein 1 122 1.4E-79 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 RA13_12450 716eb013e85fc0b5d2e816420674dd76 122 ProDom PD077583 REPLICATION TRANSCRIPTION DNA-BINDING TERMINATOR REGULATION TERMINATION 3D-STRUCTURE 11 122 1.0E-58 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 RA13_02465 9f92cdee3b9714e94477d5d764d607eb 487 SUPERFAMILY SSF53474 153 252 3.85E-11 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_02465 9f92cdee3b9714e94477d5d764d607eb 487 Pfam PF01764 Lipase (class 3) 169 201 1.5E-4 T 13-10-2018 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 RA13_02490 6514a0da1de67bc3ca7b045fefba46c8 191 Gene3D G3DSA:1.10.357.10 1 191 1.3E-69 T 13-10-2018 RA13_02490 6514a0da1de67bc3ca7b045fefba46c8 191 SUPERFAMILY SSF48498 79 186 2.13E-25 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_02490 6514a0da1de67bc3ca7b045fefba46c8 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 58 7.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_02490 6514a0da1de67bc3ca7b045fefba46c8 191 SUPERFAMILY SSF46689 6 74 1.18E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_02490 6514a0da1de67bc3ca7b045fefba46c8 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 5.2E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_02490 6514a0da1de67bc3ca7b045fefba46c8 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 5.2E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_07435 c5045a9c57f68349cb0f580656c66641 257 Pfam PF00326 Prolyl oligopeptidase family 65 256 5.5E-22 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RA13_07435 c5045a9c57f68349cb0f580656c66641 257 SUPERFAMILY SSF53474 9 256 2.72E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_07435 c5045a9c57f68349cb0f580656c66641 257 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 97 127 - T 13-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 RA13_07435 c5045a9c57f68349cb0f580656c66641 257 Gene3D G3DSA:3.40.50.1820 17 257 4.6E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_12800 9cd28e2a47f634f80aa09e9bf06d4201 103 Pfam PF01476 LysM domain 39 88 1.2E-9 T 13-10-2018 IPR018392 LysM domain RA13_12800 9cd28e2a47f634f80aa09e9bf06d4201 103 Hamap MF_02014 Cell division suppressor protein YneA [yneA]. 1 102 27.399 T 13-10-2018 IPR022887 Cell division suppressor protein, YneA RA13_12800 9cd28e2a47f634f80aa09e9bf06d4201 103 Gene3D G3DSA:3.10.350.10 24 97 3.4E-10 T 13-10-2018 IPR036779 LysM domain superfamily RA13_12800 9cd28e2a47f634f80aa09e9bf06d4201 103 SMART SM00257 37 88 0.0015 T 13-10-2018 IPR018392 LysM domain RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 SUPERFAMILY SSF46785 1 88 2.36E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 Gene3D G3DSA:3.40.190.290 92 290 4.0E-32 T 13-10-2018 RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 SUPERFAMILY SSF53850 89 289 3.98E-30 T 13-10-2018 RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 Pfam PF03466 LysR substrate binding domain 88 289 1.4E-29 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 Gene3D G3DSA:1.10.10.10 1 82 8.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21640 278f0d2d536b6b3c6484bebbaacd4316 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.7E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_18110 ae97a9c4f647821780285faee36700fd 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 161 3.0E-42 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RA13_18110 ae97a9c4f647821780285faee36700fd 294 PIRSF PIRSF000103 1 293 1.3E-69 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RA13_18110 ae97a9c4f647821780285faee36700fd 294 Gene3D G3DSA:3.40.50.720 1 164 1.3E-50 T 13-10-2018 RA13_18110 ae97a9c4f647821780285faee36700fd 294 SUPERFAMILY SSF48179 167 288 5.33E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_18110 ae97a9c4f647821780285faee36700fd 294 SUPERFAMILY SSF51735 2 163 2.48E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18110 ae97a9c4f647821780285faee36700fd 294 Gene3D G3DSA:1.10.1040.10 166 293 1.6E-37 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_18110 ae97a9c4f647821780285faee36700fd 294 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RA13_18110 ae97a9c4f647821780285faee36700fd 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 285 4.2E-29 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RA13_13630 8a4ae0692eb28d891e64299d295d211e 227 Pfam PF13392 HNH endonuclease 114 158 1.9E-9 T 13-10-2018 IPR003615 HNH nuclease RA13_13630 8a4ae0692eb28d891e64299d295d211e 227 SUPERFAMILY SSF54060 63 165 1.65E-27 T 13-10-2018 RA13_13630 8a4ae0692eb28d891e64299d295d211e 227 Gene3D G3DSA:3.90.75.20 65 167 3.3E-32 T 13-10-2018 RA13_00235 93aa14a3e25b6a481cbd84a7c4b85be4 226 SMART SM00862 147 223 5.0E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_00235 93aa14a3e25b6a481cbd84a7c4b85be4 226 SUPERFAMILY SSF52172 1 181 9.96E-37 T 13-10-2018 IPR011006 CheY-like superfamily RA13_00235 93aa14a3e25b6a481cbd84a7c4b85be4 226 Pfam PF00072 Response regulator receiver domain 1 108 4.9E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_00235 93aa14a3e25b6a481cbd84a7c4b85be4 226 SMART SM00448 1 108 1.4E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_00235 93aa14a3e25b6a481cbd84a7c4b85be4 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 2.6E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_00235 93aa14a3e25b6a481cbd84a7c4b85be4 226 Gene3D G3DSA:3.40.50.2300 1 124 5.7E-34 T 13-10-2018 RA13_00235 93aa14a3e25b6a481cbd84a7c4b85be4 226 Gene3D G3DSA:1.10.10.10 125 225 1.7E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16575 f578e5317873c2b3d66ddba332fdd9b7 110 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 26 3.4E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_16575 f578e5317873c2b3d66ddba332fdd9b7 110 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 49 69 3.4E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_16575 f578e5317873c2b3d66ddba332fdd9b7 110 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 26 39 3.4E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_16575 f578e5317873c2b3d66ddba332fdd9b7 110 SUPERFAMILY SSF46955 15 106 2.15E-18 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_16575 f578e5317873c2b3d66ddba332fdd9b7 110 SMART SM00422 14 82 6.2E-23 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_16575 f578e5317873c2b3d66ddba332fdd9b7 110 Gene3D G3DSA:1.10.1660.10 6 88 2.4E-22 T 13-10-2018 RA13_16575 f578e5317873c2b3d66ddba332fdd9b7 110 Pfam PF13411 MerR HTH family regulatory protein 15 76 3.8E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_18660 dda651604cabee300ee4569157ac374e 143 Gene3D G3DSA:1.10.10.10 1 141 5.6E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_18660 dda651604cabee300ee4569157ac374e 143 Pfam PF02082 Transcriptional regulator 1 82 2.7E-25 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type RA13_18660 dda651604cabee300ee4569157ac374e 143 SUPERFAMILY SSF46785 2 135 1.77E-37 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_18660 dda651604cabee300ee4569157ac374e 143 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 133 1.6E-40 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type RA13_18660 dda651604cabee300ee4569157ac374e 143 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site RA13_06920 f549a2c1eaa4fcc30b35cfda2ae8a3ff 424 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 7 397 0.0 T 13-10-2018 RA13_06920 f549a2c1eaa4fcc30b35cfda2ae8a3ff 424 Gene3D G3DSA:3.20.20.150 1 418 2.7E-190 T 13-10-2018 RA13_06920 f549a2c1eaa4fcc30b35cfda2ae8a3ff 424 Pfam PF06134 L-rhamnose isomerase (RhaA) 2 417 3.4E-245 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 RA13_06920 f549a2c1eaa4fcc30b35cfda2ae8a3ff 424 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 424 257.624 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 RA13_06920 f549a2c1eaa4fcc30b35cfda2ae8a3ff 424 SUPERFAMILY SSF51658 5 417 1.09E-78 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_06920 f549a2c1eaa4fcc30b35cfda2ae8a3ff 424 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 4 417 2.7E-233 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 RA13_14675 72dc9a4f87bc3eec7b3ff785a2698356 391 SUPERFAMILY SSF53383 2 389 1.03E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_14675 72dc9a4f87bc3eec7b3ff785a2698356 391 TIGRFAM TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase 7 391 8.9E-204 T 13-10-2018 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type RA13_14675 72dc9a4f87bc3eec7b3ff785a2698356 391 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 236 245 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RA13_14675 72dc9a4f87bc3eec7b3ff785a2698356 391 Gene3D G3DSA:3.40.640.10 55 289 3.4E-146 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_14675 72dc9a4f87bc3eec7b3ff785a2698356 391 Pfam PF00155 Aminotransferase class I and II 40 381 4.5E-67 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_14675 72dc9a4f87bc3eec7b3ff785a2698356 391 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 22 381 5.7E-135 T 13-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 RA13_14675 72dc9a4f87bc3eec7b3ff785a2698356 391 Gene3D G3DSA:3.90.1150.10 35 382 3.4E-146 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 TIGRFAM TIGR00838 argH: argininosuccinate lyase 4 456 7.8E-217 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 Gene3D G3DSA:1.10.40.30 361 433 7.8E-195 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 Gene3D G3DSA:1.10.275.10 26 230 7.8E-195 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 SUPERFAMILY SSF48557 4 455 5.18E-150 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.2E-68 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.2E-68 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.2E-68 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.2E-68 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.2E-68 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.2E-68 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 Pfam PF14698 Argininosuccinate lyase C-terminal 364 432 6.5E-25 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 Pfam PF00206 Lyase 7 301 5.7E-74 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 Gene3D G3DSA:1.20.200.10 120 448 7.8E-195 T 13-10-2018 RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 6.0E-29 T 13-10-2018 IPR000362 Fumarate lyase family RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 6.0E-29 T 13-10-2018 IPR000362 Fumarate lyase family RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 6.0E-29 T 13-10-2018 IPR000362 Fumarate lyase family RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 6.0E-29 T 13-10-2018 IPR000362 Fumarate lyase family RA13_08030 b342327fc5b80d16995ad14aac3b0777 460 Hamap MF_00006 Argininosuccinate lyase [argH]. 3 454 44.441 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 SUPERFAMILY SSF100879 249 350 1.08E-19 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 Pfam PF11799 impB/mucB/samB family C-terminal domain 249 355 4.6E-21 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 Hamap MF_01113 DNA polymerase IV [dinB]. 4 362 33.958 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 SUPERFAMILY SSF56672 5 241 9.78E-72 T 13-10-2018 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 Pfam PF00817 impB/mucB/samB family 10 158 8.6E-44 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 Gene3D G3DSA:2.30.40.20 24 77 8.0E-48 T 13-10-2018 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 Gene3D G3DSA:3.30.70.270 7 164 8.0E-48 T 13-10-2018 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 Gene3D G3DSA:3.30.1490.100 249 357 7.3E-20 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RA13_10490 b9b0937772a9fdd3efaebe3430738b0d 412 Gene3D G3DSA:1.10.150.20 173 243 5.5E-13 T 13-10-2018 RA13_12530 03879b27bf84ae852e030b7b237b0d22 377 SUPERFAMILY SSF48452 133 279 2.4E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_12530 03879b27bf84ae852e030b7b237b0d22 377 Gene3D G3DSA:1.25.40.10 1 377 2.8E-118 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_12530 03879b27bf84ae852e030b7b237b0d22 377 SMART SM00028 140 173 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_12530 03879b27bf84ae852e030b7b237b0d22 377 SMART SM00028 221 254 8.8E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_12530 03879b27bf84ae852e030b7b237b0d22 377 SMART SM00028 260 293 380.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_12530 03879b27bf84ae852e030b7b237b0d22 377 SMART SM00028 100 133 83.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_12530 03879b27bf84ae852e030b7b237b0d22 377 Pfam PF13424 Tetratricopeptide repeat 197 252 3.2E-10 T 13-10-2018 RA13_21245 87e04c701abfcf263783560d5ec5cae1 361 SUPERFAMILY SSF48208 15 352 4.56E-43 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RA13_21245 87e04c701abfcf263783560d5ec5cae1 361 Gene3D G3DSA:1.50.10.10 18 355 1.1E-96 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 ProSitePatterns PS00194 Thioredoxin family active site. 21 39 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 PIRSF PIRSF000077 1 104 7.3E-43 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 Gene3D G3DSA:3.40.30.10 1 104 7.1E-37 T 13-10-2018 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 SUPERFAMILY SSF52833 3 103 1.02E-36 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 103 8.1E-40 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 PRINTS PR00421 Thioredoxin family signature 20 28 1.3E-8 T 13-10-2018 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 PRINTS PR00421 Thioredoxin family signature 68 79 1.3E-8 T 13-10-2018 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 PRINTS PR00421 Thioredoxin family signature 28 37 1.3E-8 T 13-10-2018 RA13_08475 67328c3d4a8cf6ab355c24b878f1164a 104 Pfam PF00085 Thioredoxin 3 103 6.1E-31 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 SUPERFAMILY SSF52172 1 124 1.99E-35 T 13-10-2018 IPR011006 CheY-like superfamily RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 SUPERFAMILY SSF46894 130 229 1.81E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 SMART SM00862 152 227 7.2E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 Pfam PF00072 Response regulator receiver domain 4 112 4.4E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 SMART SM00448 2 112 5.2E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 Gene3D G3DSA:3.40.50.2300 2 124 2.9E-32 T 13-10-2018 RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 4.6E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_05155 2613fc23a5e31cf53ef2eafcba374015 237 Gene3D G3DSA:1.10.10.10 129 236 4.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21480 238f0fd4248fb3e81862301244401c39 472 Pfam PF07690 Major Facilitator Superfamily 20 410 4.5E-51 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_21480 238f0fd4248fb3e81862301244401c39 472 SUPERFAMILY SSF103473 9 468 9.59E-66 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_21480 238f0fd4248fb3e81862301244401c39 472 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 424 9.3E-108 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RA13_21480 238f0fd4248fb3e81862301244401c39 472 Gene3D G3DSA:1.20.1250.20 260 469 9.5E-24 T 13-10-2018 RA13_21480 238f0fd4248fb3e81862301244401c39 472 Gene3D G3DSA:1.20.1720.10 15 235 3.5E-42 T 13-10-2018 RA13_21480 238f0fd4248fb3e81862301244401c39 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 268 293 1.2E-7 T 13-10-2018 RA13_21480 238f0fd4248fb3e81862301244401c39 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 303 327 1.2E-7 T 13-10-2018 RA13_21480 238f0fd4248fb3e81862301244401c39 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 1.2E-7 T 13-10-2018 RA13_21480 238f0fd4248fb3e81862301244401c39 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 78 100 1.2E-7 T 13-10-2018 RA13_21480 238f0fd4248fb3e81862301244401c39 472 PRINTS PR01036 Tetracycline resistance protein TetB signature 234 252 1.2E-7 T 13-10-2018 RA13_20085 802653772ccd27a78f43431db37821be 229 SUPERFAMILY SSF51395 6 215 2.2E-51 T 13-10-2018 RA13_20085 802653772ccd27a78f43431db37821be 229 Gene3D G3DSA:3.20.20.390 1 229 2.0E-93 T 13-10-2018 IPR038597 GGGP/HepGP synthase superfamily RA13_20085 802653772ccd27a78f43431db37821be 229 Pfam PF01884 PcrB family 2 226 1.2E-95 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 RA13_20085 802653772ccd27a78f43431db37821be 229 TIGRFAM TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein 9 221 3.1E-70 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 RA13_20085 802653772ccd27a78f43431db37821be 229 Hamap MF_00112 Geranylgeranylglyceryl phosphate synthase [pcrB]. 3 226 28.609 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 RA13_19225 4cd265f86658642b529751b767cc0974 293 Gene3D G3DSA:3.10.310.10 9 284 3.1E-78 T 13-10-2018 RA13_19225 4cd265f86658642b529751b767cc0974 293 SUPERFAMILY SSF54506 5 286 6.46E-61 T 13-10-2018 RA13_19225 4cd265f86658642b529751b767cc0974 293 PIRSF PIRSF016184 1 293 1.3E-76 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RA13_19225 4cd265f86658642b529751b767cc0974 293 Gene3D G3DSA:3.10.310.10 124 282 3.1E-78 T 13-10-2018 RA13_19225 4cd265f86658642b529751b767cc0974 293 Pfam PF02567 Phenazine biosynthesis-like protein 9 286 3.8E-84 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RA13_19225 4cd265f86658642b529751b767cc0974 293 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 3 293 1.4E-110 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RA13_19280 2aba08b8b8ac9f16dcee2aa45c429e80 184 SUPERFAMILY SSF46785 4 181 4.75E-38 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_19280 2aba08b8b8ac9f16dcee2aa45c429e80 184 Pfam PF03551 Transcriptional regulator PadR-like family 8 81 7.0E-17 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RA13_19280 2aba08b8b8ac9f16dcee2aa45c429e80 184 Pfam PF10400 Virulence activator alpha C-term 94 180 2.9E-16 T 13-10-2018 IPR018309 Transcription regulator PadR, C-terminal RA13_19280 2aba08b8b8ac9f16dcee2aa45c429e80 184 Gene3D G3DSA:1.10.10.10 3 88 5.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 Pfam PF06723 MreB/Mbl protein 5 331 9.3E-144 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 SUPERFAMILY SSF53067 144 329 7.7E-48 T 13-10-2018 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 Gene3D G3DSA:3.90.640.10 181 254 7.6E-124 T 13-10-2018 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 Gene3D G3DSA:3.30.420.40 7 322 7.6E-124 T 13-10-2018 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 42 60 1.5E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 182 202 1.5E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 62 85 1.5E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 127 146 1.5E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 295 321 1.5E-54 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 4 331 8.4E-137 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 SUPERFAMILY SSF53067 5 141 6.2E-38 T 13-10-2018 RA13_15960 a6b5cf4edc15a0be4c9d10b1511c2129 335 Gene3D G3DSA:3.30.420.40 149 312 7.6E-124 T 13-10-2018 RA13_20155 09abefe3efcb7fd9bb6fa88885cb677e 227 PIRSF PIRSF001586 1 222 3.2E-87 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20155 09abefe3efcb7fd9bb6fa88885cb677e 227 SUPERFAMILY SSF52317 2 219 1.0E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_20155 09abefe3efcb7fd9bb6fa88885cb677e 227 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 218 9.8E-93 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_20155 09abefe3efcb7fd9bb6fa88885cb677e 227 Gene3D G3DSA:3.40.50.880 1 220 2.2E-71 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_20155 09abefe3efcb7fd9bb6fa88885cb677e 227 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 205 6.3E-43 T 13-10-2018 RA13_20155 09abefe3efcb7fd9bb6fa88885cb677e 227 SMART SM01211 1 219 2.1E-134 T 13-10-2018 RA13_20155 09abefe3efcb7fd9bb6fa88885cb677e 227 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 217 43.83 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 RA13_18380 02be0166fae707350f6ecc043d488384 255 SUPERFAMILY SSF52096 2 254 8.96E-63 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_18380 02be0166fae707350f6ecc043d488384 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 254 1.4E-44 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_18380 02be0166fae707350f6ecc043d488384 255 Gene3D G3DSA:1.10.12.10 199 255 3.3E-17 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RA13_18380 02be0166fae707350f6ecc043d488384 255 Gene3D G3DSA:3.90.226.10 1 188 8.5E-49 T 13-10-2018 RA13_16990 3b328bfe105b9c40f74f2ec54c62cd59 311 Pfam PF05065 Phage capsid family 20 306 7.0E-25 T 13-10-2018 IPR024455 Phage capsid RA13_16990 3b328bfe105b9c40f74f2ec54c62cd59 311 SUPERFAMILY SSF56563 19 305 1.31E-9 T 13-10-2018 RA13_06115 3f8b74da9d65cfebbc7e642b0f888210 374 SUPERFAMILY SSF51905 2 368 3.5E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06115 3f8b74da9d65cfebbc7e642b0f888210 374 Gene3D G3DSA:3.30.9.10 88 312 6.6E-81 T 13-10-2018 RA13_06115 3f8b74da9d65cfebbc7e642b0f888210 374 Gene3D G3DSA:3.50.50.60 5 352 6.6E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06115 3f8b74da9d65cfebbc7e642b0f888210 374 Pfam PF01266 FAD dependent oxidoreductase 4 352 1.4E-55 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RA13_06115 3f8b74da9d65cfebbc7e642b0f888210 374 SUPERFAMILY SSF54373 224 312 2.62E-12 T 13-10-2018 RA13_19550 932c93d92d6a1bff13c650b0bec0dda8 649 PIRSF PIRSF005091 1 621 1.8E-187 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like RA13_19550 932c93d92d6a1bff13c650b0bec0dda8 649 SUPERFAMILY SSF53649 244 637 2.62E-76 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_19550 932c93d92d6a1bff13c650b0bec0dda8 649 Gene3D G3DSA:3.40.720.10 238 547 2.2E-82 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_19550 932c93d92d6a1bff13c650b0bec0dda8 649 Pfam PF00884 Sulfatase 246 537 8.1E-45 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RA13_00620 083fbb1c147b419c9cf58d66df791de5 100 Pfam PF12840 Helix-turn-helix domain 5 77 5.7E-11 T 13-10-2018 RA13_00620 083fbb1c147b419c9cf58d66df791de5 100 SUPERFAMILY SSF46785 3 96 1.25E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_00620 083fbb1c147b419c9cf58d66df791de5 100 Gene3D G3DSA:1.10.10.10 1 100 1.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00620 083fbb1c147b419c9cf58d66df791de5 100 SMART SM00418 5 98 1.4E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_09895 2a1df5f101dc420fb097a19d19631f47 321 ProSitePatterns PS01125 ROK family signature. 137 164 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RA13_09895 2a1df5f101dc420fb097a19d19631f47 321 SUPERFAMILY SSF53067 6 314 4.62E-70 T 13-10-2018 RA13_09895 2a1df5f101dc420fb097a19d19631f47 321 Pfam PF00480 ROK family 7 313 8.7E-79 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RA13_09895 2a1df5f101dc420fb097a19d19631f47 321 Gene3D G3DSA:3.30.420.40 128 297 2.0E-102 T 13-10-2018 RA13_09895 2a1df5f101dc420fb097a19d19631f47 321 Gene3D G3DSA:3.30.420.40 8 308 2.0E-102 T 13-10-2018 RA13_09895 2a1df5f101dc420fb097a19d19631f47 321 TIGRFAM TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase) 7 320 3.7E-151 T 13-10-2018 IPR004654 Glucokinase ROK GO:0004340|GO:0005737|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 RA13_04240 fe5d40ba2ecf1639628b87422cb04137 384 Pfam PF01098 Cell cycle protein 12 361 2.1E-112 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_04240 fe5d40ba2ecf1639628b87422cb04137 384 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 322 346 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_04240 fe5d40ba2ecf1639628b87422cb04137 384 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 11 361 4.3E-118 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_18135 08d03f3162529b838fdac5aa3e440260 330 Gene3D G3DSA:1.10.3470.10 2 328 4.6E-95 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_18135 08d03f3162529b838fdac5aa3e440260 330 Pfam PF01032 FecCD transport family 14 322 5.2E-92 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_18135 08d03f3162529b838fdac5aa3e440260 330 SUPERFAMILY SSF81345 3 322 1.19E-81 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_10595 4a99361c798e7193efc8ea656465472f 75 Pfam PF14004 Protein of unknown function (DUF4227) 7 75 4.2E-32 T 13-10-2018 IPR025321 Protein of unknown function DUF4227 RA13_06085 0b4a6e8bcffeef76d6373495c7b4ffee 127 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 116 5.2E-16 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RA13_06085 0b4a6e8bcffeef76d6373495c7b4ffee 127 Gene3D G3DSA:1.20.1290.10 7 123 5.1E-27 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RA13_06085 0b4a6e8bcffeef76d6373495c7b4ffee 127 SUPERFAMILY SSF69118 13 123 4.97E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RA13_02590 911e73299cd971f2617c8df7d8902dcc 434 SUPERFAMILY SSF103473 11 417 1.83E-56 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_02590 911e73299cd971f2617c8df7d8902dcc 434 Pfam PF07690 Major Facilitator Superfamily 32 367 2.7E-32 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_02590 911e73299cd971f2617c8df7d8902dcc 434 ProSitePatterns PS00216 Sugar transport proteins signature 1. 69 85 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_02590 911e73299cd971f2617c8df7d8902dcc 434 ProSitePatterns PS00217 Sugar transport proteins signature 2. 111 136 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_02590 911e73299cd971f2617c8df7d8902dcc 434 Gene3D G3DSA:1.20.1250.20 12 422 6.4E-49 T 13-10-2018 RA13_09370 25b74f1738907c27d8044c5a7d3e5425 244 SUPERFAMILY SSF51735 2 191 1.67E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_09370 25b74f1738907c27d8044c5a7d3e5425 244 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 89 5.1E-12 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RA13_09370 25b74f1738907c27d8044c5a7d3e5425 244 Gene3D G3DSA:3.40.50.720 1 196 5.2E-37 T 13-10-2018 RA13_08395 b4b3fd36202bf8489f64a99e674ca2ef 248 Gene3D G3DSA:3.40.1280.10 101 248 6.3E-47 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RA13_08395 b4b3fd36202bf8489f64a99e674ca2ef 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 31 98 2.4E-7 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RA13_08395 b4b3fd36202bf8489f64a99e674ca2ef 248 SMART SM00967 31 99 2.3E-10 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RA13_08395 b4b3fd36202bf8489f64a99e674ca2ef 248 SUPERFAMILY SSF75217 99 247 4.19E-38 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RA13_08395 b4b3fd36202bf8489f64a99e674ca2ef 248 Gene3D G3DSA:3.30.1330.30 2 97 6.0E-24 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_08395 b4b3fd36202bf8489f64a99e674ca2ef 248 SUPERFAMILY SSF55315 2 97 1.41E-22 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_08395 b4b3fd36202bf8489f64a99e674ca2ef 248 Pfam PF00588 SpoU rRNA Methylase family 107 244 2.1E-34 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 Pfam PF00344 SecY translocase 68 413 1.0E-111 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 ProSitePatterns PS00755 Protein secY signature 1. 68 87 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 429 29.172 T 13-10-2018 IPR026593 Protein translocase subunit SecY RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PIRSF PIRSF004557 1 431 2.8E-124 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 425 2.3E-152 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 SUPERFAMILY SSF103491 2 420 2.88E-127 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 364 382 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 172 195 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 269 288 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 109 132 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 146 171 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 398 416 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 309 331 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 PRINTS PR00303 Preprotein translocase SecY subunit signature 67 87 3.3E-101 T 13-10-2018 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 Gene3D G3DSA:1.10.3370.10 1 425 3.7E-156 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_00950 ac7d3a82c1bcec3846238ef79876ab2b 431 ProSitePatterns PS00756 Protein secY signature 2. 165 182 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 13-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 189 3.7E-61 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 Gene3D G3DSA:3.40.50.720 6 177 1.7E-58 T 13-10-2018 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 PIRSF PIRSF000110 1 490 6.4E-188 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 SUPERFAMILY SSF55347 184 488 2.32E-114 T 13-10-2018 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 Gene3D G3DSA:3.30.360.10 178 489 9.0E-124 T 13-10-2018 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 192 487 1.3E-113 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 SUPERFAMILY SSF51735 7 186 3.35E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 489 1.4E-207 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 489 89.928 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 330 356 9.6E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 9.6E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 9.6E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 9.6E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_10405 cb548ebe2defe3797845375fd4be67d4 490 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 9.6E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 RA13_12285 6572831aa7865f91fe0caeb5acc7e86d 529 Gene3D G3DSA:1.20.1730.10 22 528 2.6E-124 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RA13_12285 6572831aa7865f91fe0caeb5acc7e86d 529 Pfam PF00474 Sodium:solute symporter family 34 432 5.3E-54 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_12285 6572831aa7865f91fe0caeb5acc7e86d 529 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 34 440 4.0E-87 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_19295 e0b1a34d83ba75f3cda9dc037b30f35c 285 ProSitePatterns PS00934 Glyoxalase I signature 1. 172 193 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 RA13_19295 e0b1a34d83ba75f3cda9dc037b30f35c 285 SUPERFAMILY SSF54593 4 169 8.59E-37 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_19295 e0b1a34d83ba75f3cda9dc037b30f35c 285 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 123 6.2E-14 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_19295 e0b1a34d83ba75f3cda9dc037b30f35c 285 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 170 265 2.2E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_19295 e0b1a34d83ba75f3cda9dc037b30f35c 285 Gene3D G3DSA:3.10.180.10 168 285 2.9E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_19295 e0b1a34d83ba75f3cda9dc037b30f35c 285 SUPERFAMILY SSF54593 170 275 3.16E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_19295 e0b1a34d83ba75f3cda9dc037b30f35c 285 Gene3D G3DSA:3.10.180.10 8 142 1.2E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_07400 30d0905064508a775c11ad67c45bb856 145 Pfam PF00210 Ferritin-like domain 6 145 4.3E-32 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RA13_07400 30d0905064508a775c11ad67c45bb856 145 PIRSF PIRSF005900 1 145 6.9E-46 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_07400 30d0905064508a775c11ad67c45bb856 145 ProSitePatterns PS00818 Dps protein family signature 1. 27 43 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RA13_07400 30d0905064508a775c11ad67c45bb856 145 ProSitePatterns PS00819 Dps protein family signature 2. 53 67 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RA13_07400 30d0905064508a775c11ad67c45bb856 145 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 1.0E-14 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_07400 30d0905064508a775c11ad67c45bb856 145 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 122 140 1.0E-14 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_07400 30d0905064508a775c11ad67c45bb856 145 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 27 43 1.0E-14 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_07400 30d0905064508a775c11ad67c45bb856 145 Gene3D G3DSA:1.20.1260.10 2 145 5.2E-53 T 13-10-2018 IPR012347 Ferritin-like RA13_07400 30d0905064508a775c11ad67c45bb856 145 SUPERFAMILY SSF47240 4 145 7.14E-46 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_00940 625a0126036bc684042c0197c2094b8b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 2.0E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_00940 625a0126036bc684042c0197c2094b8b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 2.0E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_00940 625a0126036bc684042c0197c2094b8b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 2.0E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_00940 625a0126036bc684042c0197c2094b8b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 2.0E-24 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_00940 625a0126036bc684042c0197c2094b8b 248 Gene3D G3DSA:3.90.230.10 1 248 4.3E-108 T 13-10-2018 RA13_00940 625a0126036bc684042c0197c2094b8b 248 Pfam PF00557 Metallopeptidase family M24 12 239 1.1E-56 T 13-10-2018 IPR000994 Peptidase M24 RA13_00940 625a0126036bc684042c0197c2094b8b 248 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 1.8E-104 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_00940 625a0126036bc684042c0197c2094b8b 248 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_00940 625a0126036bc684042c0197c2094b8b 248 SUPERFAMILY SSF55920 1 247 1.83E-90 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RA13_00940 625a0126036bc684042c0197c2094b8b 248 Hamap MF_01974 Methionine aminopeptidase [map]. 2 248 43.294 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_16490 68cf7345cbebf3aba20762c345e3d677 264 TIGRFAM TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family 12 243 3.6E-92 T 13-10-2018 IPR022493 Integral membrane YkoY RA13_16490 68cf7345cbebf3aba20762c345e3d677 264 Pfam PF03741 Integral membrane protein TerC family 15 203 7.4E-52 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RA13_17650 31970c4e70dcc4addbf42a39975ec8e6 312 SUPERFAMILY SSF53901 3 310 2.95E-71 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_17650 31970c4e70dcc4addbf42a39975ec8e6 312 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 310 70.851 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_17650 31970c4e70dcc4addbf42a39975ec8e6 312 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 310 1.6E-144 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_17650 31970c4e70dcc4addbf42a39975ec8e6 312 Gene3D G3DSA:3.40.47.10 1 312 2.5E-130 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_17650 31970c4e70dcc4addbf42a39975ec8e6 312 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 184 1.7E-30 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_17650 31970c4e70dcc4addbf42a39975ec8e6 312 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 221 310 1.0E-35 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_07405 8bb4d1904ddd90ad20474fc9292b42de 134 Pfam PF05105 Bacteriophage holin family 18 128 4.4E-24 T 13-10-2018 IPR006480 Bacteriophage holin family RA13_07405 8bb4d1904ddd90ad20474fc9292b42de 134 TIGRFAM TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin 11 133 1.4E-33 T 13-10-2018 IPR006480 Bacteriophage holin family RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00369 Flavodoxin signature 541 552 1.5E-11 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00369 Flavodoxin signature 572 582 1.5E-11 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00369 Flavodoxin signature 597 616 1.5E-11 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00369 Flavodoxin signature 494 507 1.5E-11 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Gene3D G3DSA:3.40.50.360 490 641 3.2E-45 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Gene3D G3DSA:2.40.30.10 681 890 3.5E-74 T 13-10-2018 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Pfam PF00258 Flavodoxin 495 627 2.0E-27 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Gene3D G3DSA:1.10.630.10 4 472 6.1E-169 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PIRSF PIRSF000209 1 1061 0.0 T 13-10-2018 IPR023206 Bifunctional cytochrome P450/NADPH--cytochrome P450 reductase GO:0003958|GO:0055114|GO:0070330 KEGG: 00071+1.14.14.1|KEGG: 00140+1.14.14.1|KEGG: 00232+1.14.14.1|KEGG: 00380+1.14.14.1|KEGG: 00590+1.14.14.1|KEGG: 00591+1.14.14.1|KEGG: 00627+1.14.14.1|KEGG: 00830+1.14.14.1|KEGG: 00980+1.14.14.1|KEGG: 00982+1.14.14.1|MetaCyc: PWY-5451|MetaCyc: PWY-5665|MetaCyc: PWY-6398|MetaCyc: PWY-6992|MetaCyc: PWY-7466|MetaCyc: PWY-7826 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Pfam PF00067 Cytochrome P450 12 449 4.1E-87 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 SUPERFAMILY SSF52343 901 1058 2.75E-46 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Gene3D G3DSA:1.20.990.10 716 838 3.5E-74 T 13-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 SUPERFAMILY SSF63380 674 896 2.46E-67 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 396 405 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Pfam PF00667 FAD binding domain 674 880 2.8E-41 T 13-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Gene3D G3DSA:3.40.50.80 901 1060 2.8E-57 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 Pfam PF00175 Oxidoreductase NAD-binding domain 913 1021 1.3E-18 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 SUPERFAMILY SSF48264 4 454 8.12E-111 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 SUPERFAMILY SSF52218 489 644 3.98E-42 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 840 847 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1007 1015 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 875 884 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 912 931 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 953 964 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 941 950 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 984 1000 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_19775 fb7e0237e992e1df35d997f698c79fac 1061 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 706 716 1.3E-33 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_10310 704e5b1c39f5723be3d335f5bcfa00aa 330 Pfam PF00676 Dehydrogenase E1 component 20 320 5.8E-108 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RA13_10310 704e5b1c39f5723be3d335f5bcfa00aa 330 Gene3D G3DSA:3.40.50.970 2 330 8.2E-118 T 13-10-2018 RA13_10310 704e5b1c39f5723be3d335f5bcfa00aa 330 SUPERFAMILY SSF52518 9 330 3.85E-101 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_21340 fb9e2532d49e49e2b2a68d04a641ba5b 255 SMART SM00346 5 93 1.4E-30 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RA13_21340 fb9e2532d49e49e2b2a68d04a641ba5b 255 Pfam PF09339 IclR helix-turn-helix domain 8 56 1.9E-12 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RA13_21340 fb9e2532d49e49e2b2a68d04a641ba5b 255 Pfam PF01614 Bacterial transcriptional regulator 120 245 3.5E-35 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal RA13_21340 fb9e2532d49e49e2b2a68d04a641ba5b 255 Gene3D G3DSA:1.10.10.10 3 76 1.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21340 fb9e2532d49e49e2b2a68d04a641ba5b 255 SUPERFAMILY SSF46785 6 76 4.78E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21340 fb9e2532d49e49e2b2a68d04a641ba5b 255 Gene3D G3DSA:3.30.450.40 77 252 1.7E-53 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_21340 fb9e2532d49e49e2b2a68d04a641ba5b 255 SUPERFAMILY SSF55781 61 249 2.16E-47 T 13-10-2018 RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 Gene3D G3DSA:2.40.30.60 6 94 2.5E-19 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 Pfam PF01782 RimM N-terminal domain 8 92 1.3E-21 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 Pfam PF05239 PRC-barrel domain 99 171 1.1E-14 T 13-10-2018 IPR027275 PRC-barrel domain RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 5 171 3.0E-51 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 Gene3D G3DSA:2.30.30.240 96 174 1.5E-22 T 13-10-2018 RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 SUPERFAMILY SSF50447 5 93 7.89E-21 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 SUPERFAMILY SSF50346 101 171 7.69E-21 T 13-10-2018 IPR011033 PRC-barrel-like superfamily RA13_15175 147d55b6044f062e0fbc99f0b0f42798 174 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 5 171 23.325 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 269 278 6.3E-52 T 13-10-2018 IPR017861 Kae1/TsaD family RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 10 23 6.3E-52 T 13-10-2018 IPR017861 Kae1/TsaD family RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 103 122 6.3E-52 T 13-10-2018 IPR017861 Kae1/TsaD family RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 136 148 6.3E-52 T 13-10-2018 IPR017861 Kae1/TsaD family RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 159 180 6.3E-52 T 13-10-2018 IPR017861 Kae1/TsaD family RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 82 102 6.3E-52 T 13-10-2018 IPR017861 Kae1/TsaD family RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 SUPERFAMILY SSF53067 107 315 4.75E-44 T 13-10-2018 RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 Pfam PF00814 Glycoprotease family 29 313 2.6E-105 T 13-10-2018 IPR000905 Gcp-like domain RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 Gene3D G3DSA:3.30.420.40 9 322 3.0E-124 T 13-10-2018 RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 7 338 64.242 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 ProSitePatterns PS01016 Glycoprotease family signature. 102 122 - T 13-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 10 313 1.5E-110 T 13-10-2018 IPR017861 Kae1/TsaD family RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 9 320 1.9E-133 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 Gene3D G3DSA:3.30.420.40 134 300 3.0E-124 T 13-10-2018 RA13_20435 4776fd449b53c70ff05b2eb6aaff7ab9 346 SUPERFAMILY SSF53067 8 128 8.42E-32 T 13-10-2018 RA13_10925 edac904f5f21679d21d2472c026e3feb 262 Pfam PF00149 Calcineurin-like phosphoesterase 48 203 2.6E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_10925 edac904f5f21679d21d2472c026e3feb 262 Gene3D G3DSA:3.60.21.10 46 232 2.6E-21 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_10925 edac904f5f21679d21d2472c026e3feb 262 SUPERFAMILY SSF56300 43 256 1.31E-33 T 13-10-2018 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 239 261 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 212 224 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 3.9E-88 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 3 299 4.1E-144 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 ProSitePatterns PS00433 Phosphofructokinase signature. 243 261 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 Pfam PF00365 Phosphofructokinase 3 275 4.0E-114 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 PIRSF PIRSF000532 1 319 6.3E-126 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 318 49.441 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 SUPERFAMILY SSF53784 1 315 4.97E-121 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 Gene3D G3DSA:3.40.50.460 142 251 8.3E-123 T 13-10-2018 RA13_08100 1787ff917d11112f0c0dc3a449add08c 319 Gene3D G3DSA:3.40.50.450 3 279 8.3E-123 T 13-10-2018 RA13_04760 2d93adfe07f6287995112037e5e2e4b0 396 Gene3D G3DSA:3.40.50.2000 130 208 1.0E-6 T 13-10-2018 RA13_04760 2d93adfe07f6287995112037e5e2e4b0 396 Gene3D G3DSA:3.40.50.2000 209 368 1.5E-30 T 13-10-2018 RA13_04760 2d93adfe07f6287995112037e5e2e4b0 396 SUPERFAMILY SSF53756 40 388 8.9E-28 T 13-10-2018 RA13_04760 2d93adfe07f6287995112037e5e2e4b0 396 Pfam PF13692 Glycosyl transferases group 1 222 359 2.8E-12 T 13-10-2018 RA13_12965 6f4914311946ba41fec32a17bbd5e143 275 SMART SM00422 9 78 2.1E-22 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_12965 6f4914311946ba41fec32a17bbd5e143 275 SUPERFAMILY SSF46955 9 119 7.69E-24 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_12965 6f4914311946ba41fec32a17bbd5e143 275 Gene3D G3DSA:1.10.1660.10 7 141 4.1E-28 T 13-10-2018 RA13_12965 6f4914311946ba41fec32a17bbd5e143 275 SUPERFAMILY SSF55136 130 270 6.28E-15 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RA13_12965 6f4914311946ba41fec32a17bbd5e143 275 Pfam PF13411 MerR HTH family regulatory protein 9 77 1.0E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_15350 44229ec6657cb3ffc014793dae075614 291 Pfam PF03755 YicC-like family, N-terminal region 2 156 2.0E-37 T 13-10-2018 IPR013527 YicC-like, N-terminal RA13_15350 44229ec6657cb3ffc014793dae075614 291 Pfam PF08340 Domain of unknown function (DUF1732) 208 291 5.8E-38 T 13-10-2018 IPR013551 Domain of unknown function DUF1732 RA13_15350 44229ec6657cb3ffc014793dae075614 291 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 291 1.8E-120 T 13-10-2018 IPR005229 Conserved hypothetical protein CHP00255 RA13_17665 a71af887a7a34dea2bee06f67f8cba0b 317 Gene3D G3DSA:3.40.50.2300 41 282 2.9E-75 T 13-10-2018 RA13_17665 a71af887a7a34dea2bee06f67f8cba0b 317 Gene3D G3DSA:3.40.50.2300 132 298 2.9E-75 T 13-10-2018 RA13_17665 a71af887a7a34dea2bee06f67f8cba0b 317 SUPERFAMILY SSF53822 25 228 2.26E-18 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_17665 a71af887a7a34dea2bee06f67f8cba0b 317 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 27 316 5.3E-79 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 541 1.9E-213 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 676 27.69 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 SUPERFAMILY SSF109604 339 509 1.22E-20 T 13-10-2018 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 Pfam PF05746 DALR anticodon binding domain 573 660 6.5E-5 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 677 8.1E-302 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 2.0E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 243 258 2.0E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 315 331 2.0E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 2.0E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_09700 142155a6d96b329155b2efb2a1b234bf 679 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 2.0E-38 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RA13_13615 daff47f16b5edcc9f333a5b800e79891 329 SUPERFAMILY SSF47240 2 320 8.85E-91 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_13615 daff47f16b5edcc9f333a5b800e79891 329 Pfam PF00268 Ribonucleotide reductase, small chain 8 284 1.8E-82 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_13615 daff47f16b5edcc9f333a5b800e79891 329 Gene3D G3DSA:1.10.620.20 3 293 2.2E-111 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RA13_13615 daff47f16b5edcc9f333a5b800e79891 329 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 5 322 3.6E-143 T 13-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_13615 daff47f16b5edcc9f333a5b800e79891 329 PIRSF PIRSF000355 1 319 3.4E-90 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_13615 daff47f16b5edcc9f333a5b800e79891 329 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 96 113 - T 13-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_16280 d94bbaa159b08ecec787667a29441887 162 ProSitePatterns PS00194 Thioredoxin family active site. 54 72 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RA13_16280 d94bbaa159b08ecec787667a29441887 162 Gene3D G3DSA:3.40.30.10 20 161 4.4E-39 T 13-10-2018 RA13_16280 d94bbaa159b08ecec787667a29441887 162 SUPERFAMILY SSF52833 40 158 8.92E-30 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_16280 d94bbaa159b08ecec787667a29441887 162 Pfam PF00578 AhpC/TSA family 41 145 1.6E-22 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_15685 93e9f22beeb497a701b46ed7ccaf16fd 185 SUPERFAMILY SSF53335 1 181 1.8E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_15685 93e9f22beeb497a701b46ed7ccaf16fd 185 PIRSF PIRSF004553 1 183 9.7E-51 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RA13_15685 93e9f22beeb497a701b46ed7ccaf16fd 185 Pfam PF03602 Conserved hypothetical protein 95 1 180 2.0E-57 T 13-10-2018 RA13_15685 93e9f22beeb497a701b46ed7ccaf16fd 185 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 181 9.2E-63 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RA13_15685 93e9f22beeb497a701b46ed7ccaf16fd 185 Gene3D G3DSA:3.40.50.150 1 185 8.3E-58 T 13-10-2018 RA13_21635 f729db07429150699c6e9a1410f136aa 186 Gene3D G3DSA:3.40.50.1950 1 185 9.3E-78 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RA13_21635 f729db07429150699c6e9a1410f136aa 186 Pfam PF02441 Flavoprotein 1 157 4.0E-25 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RA13_21635 f729db07429150699c6e9a1410f136aa 186 SUPERFAMILY SSF52507 1 178 1.13E-61 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RA13_21635 f729db07429150699c6e9a1410f136aa 186 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 1 178 34.362 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like RA13_21635 f729db07429150699c6e9a1410f136aa 186 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 1 176 8.8E-90 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like RA13_21635 f729db07429150699c6e9a1410f136aa 186 Hamap MF_01986 Probable UbiX-like flavin prenyltransferase. 1 182 47.884 T 13-10-2018 IPR032901 Probable UbiX-like flavin prenyltransferase RA13_08595 f6ce6b71a075bdc2cedf119c382269a9 365 SUPERFAMILY SSF53659 4 356 1.21E-123 T 13-10-2018 RA13_08595 f6ce6b71a075bdc2cedf119c382269a9 365 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 352 2.0E-144 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RA13_08595 f6ce6b71a075bdc2cedf119c382269a9 365 Gene3D G3DSA:3.40.718.10 2 365 2.9E-153 T 13-10-2018 RA13_08595 f6ce6b71a075bdc2cedf119c382269a9 365 SMART SM01329 4 352 1.1E-201 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RA13_08595 f6ce6b71a075bdc2cedf119c382269a9 365 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 351 2.0E-171 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 RA13_08595 f6ce6b71a075bdc2cedf119c382269a9 365 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RA13_08595 f6ce6b71a075bdc2cedf119c382269a9 365 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 356 50.372 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 PIRSF PIRSF001399 1 145 1.8E-59 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 13-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 Gene3D G3DSA:3.40.50.9100 2 144 4.2E-62 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 146 61.761 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 Pfam PF01220 Dehydroquinase class II 5 139 5.2E-57 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 SUPERFAMILY SSF52304 4 143 6.41E-56 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 142 4.0E-66 T 13-10-2018 RA13_10095 29feeacf1179abec4bbb7673cc4c2a97 146 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 7.5E-64 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_18550 d7c88c4dabbb3eb5fd071f889c1c9e85 374 Gene3D G3DSA:3.50.50.60 5 353 6.0E-77 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18550 d7c88c4dabbb3eb5fd071f889c1c9e85 374 Pfam PF01266 FAD dependent oxidoreductase 3 352 8.8E-53 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RA13_18550 d7c88c4dabbb3eb5fd071f889c1c9e85 374 Gene3D G3DSA:3.30.9.10 88 312 6.0E-77 T 13-10-2018 RA13_18550 d7c88c4dabbb3eb5fd071f889c1c9e85 374 SUPERFAMILY SSF54373 221 313 8.63E-12 T 13-10-2018 RA13_18550 d7c88c4dabbb3eb5fd071f889c1c9e85 374 SUPERFAMILY SSF51905 1 366 7.12E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_01315 57fa464b876fe0c66843cb3798400de7 120 SUPERFAMILY SSF55620 2 119 1.11E-40 T 13-10-2018 RA13_01315 57fa464b876fe0c66843cb3798400de7 120 Pfam PF02152 Dihydroneopterin aldolase 4 116 7.5E-37 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RA13_01315 57fa464b876fe0c66843cb3798400de7 120 SMART SM00905 4 117 3.6E-53 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RA13_01315 57fa464b876fe0c66843cb3798400de7 120 TIGRFAM TIGR00526 folB_dom: FolB domain 1 119 1.2E-41 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RA13_01315 57fa464b876fe0c66843cb3798400de7 120 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 117 9.6E-47 T 13-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RA13_01315 57fa464b876fe0c66843cb3798400de7 120 Gene3D G3DSA:3.30.1130.10 1 120 5.6E-48 T 13-10-2018 RA13_19555 c0c66a39f0161b0c811051e8158f50dc 453 Gene3D G3DSA:3.30.1360.60 379 452 2.4E-23 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_19555 c0c66a39f0161b0c811051e8158f50dc 453 Pfam PF02378 Phosphotransferase system, EIIC 9 293 9.8E-80 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_19555 c0c66a39f0161b0c811051e8158f50dc 453 SUPERFAMILY SSF55604 381 449 5.36E-19 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_19555 c0c66a39f0161b0c811051e8158f50dc 453 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 352 437 5.0E-16 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 RA13_19555 c0c66a39f0161b0c811051e8158f50dc 453 Pfam PF00367 phosphotransferase system, EIIB 382 412 2.4E-11 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_19555 c0c66a39f0161b0c811051e8158f50dc 453 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 1 448 8.8E-177 T 13-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 RA13_21500 bc57fed9f632a2607261688cc4874562 316 Gene3D G3DSA:1.10.3470.10 1 315 8.7E-63 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_21500 bc57fed9f632a2607261688cc4874562 316 SUPERFAMILY SSF81345 3 312 1.57E-67 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_21500 bc57fed9f632a2607261688cc4874562 316 Pfam PF01032 FecCD transport family 9 311 1.4E-65 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_13140 99c38567e641ebfb6976ab6a6440a6b7 171 SUPERFAMILY SSF82784 4 168 1.83E-40 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RA13_13140 99c38567e641ebfb6976ab6a6440a6b7 171 Gene3D G3DSA:3.30.300.20 1 157 4.1E-46 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_13140 99c38567e641ebfb6976ab6a6440a6b7 171 Pfam PF02566 OsmC-like protein 62 164 4.2E-22 T 13-10-2018 IPR003718 OsmC/Ohr family RA13_16360 53ba70677fcafcfd1092f0ec8441d946 262 Pfam PF00691 OmpA family 144 244 5.2E-14 T 13-10-2018 IPR006665 OmpA-like domain RA13_16360 53ba70677fcafcfd1092f0ec8441d946 262 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 58 6.6E-21 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain RA13_16360 53ba70677fcafcfd1092f0ec8441d946 262 SUPERFAMILY SSF103088 131 252 4.97E-29 T 13-10-2018 IPR036737 OmpA-like domain superfamily RA13_16360 53ba70677fcafcfd1092f0ec8441d946 262 Gene3D G3DSA:3.30.1330.60 83 260 1.1E-45 T 13-10-2018 IPR036737 OmpA-like domain superfamily RA13_06025 755db2ac848a343747169522bf7e285d 818 Gene3D G3DSA:1.10.1040.10 394 461 1.3E-6 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_06025 755db2ac848a343747169522bf7e285d 818 Gene3D G3DSA:1.10.1040.10 235 354 1.6E-18 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_06025 755db2ac848a343747169522bf7e285d 818 Pfam PF00378 Enoyl-CoA hydratase/isomerase 515 654 2.9E-13 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_06025 755db2ac848a343747169522bf7e285d 818 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 33 231 2.6E-42 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RA13_06025 755db2ac848a343747169522bf7e285d 818 SUPERFAMILY SSF48179 383 481 6.29E-18 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_06025 755db2ac848a343747169522bf7e285d 818 SUPERFAMILY SSF48179 232 353 1.11E-21 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_06025 755db2ac848a343747169522bf7e285d 818 SUPERFAMILY SSF51735 30 232 3.0E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06025 755db2ac848a343747169522bf7e285d 818 SUPERFAMILY SSF52096 508 815 7.36E-43 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_06025 755db2ac848a343747169522bf7e285d 818 Gene3D G3DSA:3.40.50.720 27 234 9.0E-64 T 13-10-2018 RA13_06025 755db2ac848a343747169522bf7e285d 818 Gene3D G3DSA:3.90.226.10 510 717 4.2E-31 T 13-10-2018 RA13_06025 755db2ac848a343747169522bf7e285d 818 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 234 332 2.3E-11 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 Gene3D G3DSA:1.20.120.530 99 230 2.7E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 5.6E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 5.6E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 SMART SM00345 22 81 8.8E-23 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 Gene3D G3DSA:1.10.10.10 7 81 7.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 Pfam PF07729 FCD domain 104 220 6.5E-21 T 13-10-2018 IPR011711 GntR, C-terminal RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 1.3E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 SUPERFAMILY SSF48008 99 228 2.62E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 SUPERFAMILY SSF46785 10 82 2.16E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_00260 6636f92abaf223ccbe032db4d63b45dc 233 SMART SM00895 103 221 2.1E-17 T 13-10-2018 IPR011711 GntR, C-terminal RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 333 1.6E-126 T 13-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 Pfam PF13602 Zinc-binding dehydrogenase 191 332 1.1E-18 T 13-10-2018 RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 SMART SM00829 13 332 2.1E-10 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 90 5.8E-5 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 SUPERFAMILY SSF50129 7 152 5.02E-31 T 13-10-2018 IPR011032 GroES-like superfamily RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 148 169 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 SUPERFAMILY SSF51735 117 284 1.78E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 Gene3D G3DSA:3.90.180.10 25 331 9.0E-108 T 13-10-2018 RA13_19265 c91493821ceae6364cf0e085f3d2356f 335 Gene3D G3DSA:3.40.50.720 128 273 9.0E-108 T 13-10-2018 RA13_08815 5cd6f9aa1edddff181a8e5ef743b4114 405 SUPERFAMILY SSF54106 2 48 8.63E-11 T 13-10-2018 RA13_08815 5cd6f9aa1edddff181a8e5ef743b4114 405 SMART SM00257 3 48 5.9E-16 T 13-10-2018 IPR018392 LysM domain RA13_08815 5cd6f9aa1edddff181a8e5ef743b4114 405 Gene3D G3DSA:3.10.350.10 3 47 2.9E-15 T 13-10-2018 IPR036779 LysM domain superfamily RA13_08815 5cd6f9aa1edddff181a8e5ef743b4114 405 TIGRFAM TIGR02899 spore_safA: spore coat assembly protein SafA 6 49 2.5E-26 T 13-10-2018 IPR014248 Spore coat assembly protein SafA RA13_08815 5cd6f9aa1edddff181a8e5ef743b4114 405 Pfam PF01476 LysM domain 4 48 3.0E-14 T 13-10-2018 IPR018392 LysM domain RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 161 4.8E-52 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 Gene3D G3DSA:1.10.1040.10 164 288 1.8E-39 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 285 3.8E-35 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 7 20 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 PIRSF PIRSF000103 1 288 2.2E-70 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 Gene3D G3DSA:3.40.50.720 1 163 1.5E-53 T 13-10-2018 RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 SUPERFAMILY SSF48179 164 286 5.55E-38 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_16215 bd01c0bb6abc385f8aa8fef20389b106 288 SUPERFAMILY SSF51735 3 164 4.57E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08715 42df4e71d3c278be712dc9333e760e1b 231 Gene3D G3DSA:3.40.140.10 107 231 2.0E-46 T 13-10-2018 RA13_08715 42df4e71d3c278be712dc9333e760e1b 231 Gene3D G3DSA:1.10.150.20 54 94 1.1E-5 T 13-10-2018 RA13_08715 42df4e71d3c278be712dc9333e760e1b 231 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 180 185 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site RA13_08715 42df4e71d3c278be712dc9333e760e1b 231 SUPERFAMILY SSF47781 22 96 2.89E-8 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_08715 42df4e71d3c278be712dc9333e760e1b 231 TIGRFAM TIGR00608 radc: DNA repair protein RadC 18 231 3.2E-92 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 RA13_08715 42df4e71d3c278be712dc9333e760e1b 231 Pfam PF04002 RadC-like JAB domain 111 229 8.1E-47 T 13-10-2018 IPR025657 RadC-like JAB domain RA13_08715 42df4e71d3c278be712dc9333e760e1b 231 SUPERFAMILY SSF102712 160 197 4.58E-5 T 13-10-2018 RA13_04260 bd1bb281becbda74e9911b3b0b5277c1 173 PRINTS PR01398 Isochorismatase signature 130 148 6.9E-7 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_04260 bd1bb281becbda74e9911b3b0b5277c1 173 PRINTS PR01398 Isochorismatase signature 148 165 6.9E-7 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_04260 bd1bb281becbda74e9911b3b0b5277c1 173 PRINTS PR01398 Isochorismatase signature 74 96 6.9E-7 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 RA13_04260 bd1bb281becbda74e9911b3b0b5277c1 173 SUPERFAMILY SSF52499 5 171 2.09E-43 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_04260 bd1bb281becbda74e9911b3b0b5277c1 173 Pfam PF00857 Isochorismatase family 13 167 1.9E-33 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RA13_04260 bd1bb281becbda74e9911b3b0b5277c1 173 Gene3D G3DSA:3.40.50.850 1 170 4.9E-42 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_00760 c5782d7c1afddba23f697939802b599c 334 Pfam PF01032 FecCD transport family 12 329 4.6E-85 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_00760 c5782d7c1afddba23f697939802b599c 334 SUPERFAMILY SSF81345 4 329 3.66E-77 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_00760 c5782d7c1afddba23f697939802b599c 334 Gene3D G3DSA:1.10.3470.10 1 334 8.8E-94 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_17945 6c015f737ade25ccee346142251ae24f 395 Pfam PF04235 Protein of unknown function (DUF418) 230 388 3.1E-40 T 13-10-2018 IPR007349 Domain of unknown function DUF418 RA13_03765 1b4c831bc1a69a7193e964cd8b26a505 453 Gene3D G3DSA:2.130.10.10 377 453 4.1E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_03765 1b4c831bc1a69a7193e964cd8b26a505 453 Gene3D G3DSA:2.130.10.10 152 376 2.7E-36 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_03765 1b4c831bc1a69a7193e964cd8b26a505 453 SUPERFAMILY SSF50974 162 452 2.22E-37 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 Gene3D G3DSA:3.40.1190.10 30 238 7.5E-16 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 Pfam PF08245 Mur ligase middle domain 37 199 3.0E-9 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 111 126 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 57 74 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 196 213 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 140 155 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 258 275 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 293 308 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 362 378 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 162 179 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 34 50 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 77 95 2.3E-108 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 TIGRFAM TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB 2 383 4.7E-174 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 RA13_04585 67a37c6ca450fec9605e629df7abf73a 393 SUPERFAMILY SSF53623 33 235 7.56E-18 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_02365 dda8cac1b1fe29c20d2dbe43523a1144 437 Pfam PF00654 Voltage gated chloride channel 87 398 1.1E-58 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RA13_02365 dda8cac1b1fe29c20d2dbe43523a1144 437 SUPERFAMILY SSF81340 5 408 7.19E-74 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RA13_02365 dda8cac1b1fe29c20d2dbe43523a1144 437 PRINTS PR00762 Chloride channel signature 106 125 1.9E-10 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RA13_02365 dda8cac1b1fe29c20d2dbe43523a1144 437 PRINTS PR00762 Chloride channel signature 408 422 1.9E-10 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RA13_02365 dda8cac1b1fe29c20d2dbe43523a1144 437 PRINTS PR00762 Chloride channel signature 157 176 1.9E-10 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RA13_02365 dda8cac1b1fe29c20d2dbe43523a1144 437 PRINTS PR00762 Chloride channel signature 321 341 1.9E-10 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RA13_02365 dda8cac1b1fe29c20d2dbe43523a1144 437 Gene3D G3DSA:1.10.3080.10 10 414 3.6E-53 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 SUPERFAMILY SSF54791 208 304 7.03E-16 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 Gene3D G3DSA:3.30.1370.10 208 305 1.2E-8 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 SMART SM00322 208 275 1.1E-6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 Hamap MF_00335 Ribonuclease Y [rny]. 5 520 25.959 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 Pfam PF00013 KH domain 213 267 3.4E-6 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 TIGRFAM TIGR00277 HDIG: HDIG domain 332 409 9.9E-27 T 13-10-2018 IPR006675 HDIG domain RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 Pfam PF01966 HD domain 337 428 5.9E-19 T 13-10-2018 IPR006674 HD domain RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 Gene3D G3DSA:1.10.3210.10 319 473 7.1E-20 T 13-10-2018 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 8 520 9.8E-247 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 SUPERFAMILY SSF109604 316 467 2.92E-32 T 13-10-2018 RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 Pfam PF12072 Domain of unknown function (DUF3552) 6 205 2.1E-76 T 13-10-2018 IPR022711 Ribonuclease Y, N-terminal RA13_14695 5707eaa1e748a8a789c2e7e7433860fb 520 SMART SM00471 332 438 5.3E-14 T 13-10-2018 IPR003607 HD/PDEase domain RA13_16695 bd6f2f393298f834a27d368781582e84 415 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 404 2.6E-179 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_16695 bd6f2f393298f834a27d368781582e84 415 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 3 414 40.068 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_16695 bd6f2f393298f834a27d368781582e84 415 SUPERFAMILY SSF53720 3 414 3.27E-107 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_16695 bd6f2f393298f834a27d368781582e84 415 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 321 342 - T 13-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_16695 bd6f2f393298f834a27d368781582e84 415 Gene3D G3DSA:3.40.605.10 20 409 1.1E-156 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_16695 bd6f2f393298f834a27d368781582e84 415 PIRSF PIRSF000151 1 415 3.2E-169 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RA13_16695 bd6f2f393298f834a27d368781582e84 415 Pfam PF00171 Aldehyde dehydrogenase family 3 283 1.6E-14 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_16695 bd6f2f393298f834a27d368781582e84 415 Gene3D G3DSA:3.40.309.10 224 372 1.1E-156 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_00240 bbc0fc1e54235dfafa233f0740770157 53 Gene3D G3DSA:2.10.230.20 1 53 2.2E-27 T 13-10-2018 RA13_00240 bbc0fc1e54235dfafa233f0740770157 53 Pfam PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein 1 52 1.3E-24 T 13-10-2018 IPR031538 Tryptophan RNA-binding attenuator protein inhibitory protein RA13_00240 bbc0fc1e54235dfafa233f0740770157 53 SUPERFAMILY SSF57938 10 37 2.49E-6 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RA13_01480 a604b9f1d640dedab606265b0b60976e 285 Pfam PF00156 Phosphoribosyl transferase domain 108 246 1.8E-21 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RA13_01480 a604b9f1d640dedab606265b0b60976e 285 TIGRFAM TIGR01743 purR_Bsub: pur operon repressor PurR 3 270 1.3E-137 T 13-10-2018 IPR010078 Pur operon repressor GO:0003677|GO:0045892|GO:0045982 RA13_01480 a604b9f1d640dedab606265b0b60976e 285 Gene3D G3DSA:1.10.10.10 1 73 1.3E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_01480 a604b9f1d640dedab606265b0b60976e 285 ProDom PD029816 REPRESSOR OPERON PUR TRANSCRIPTION PURINE TRANSCRIPTIONAL PURR REGULATION DNA-BINDING GLYCOSYLTRANSFERASE 9 74 6.0E-32 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 RA13_01480 a604b9f1d640dedab606265b0b60976e 285 Pfam PF09182 Bacterial purine repressor, N-terminal 4 73 3.2E-31 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 RA13_01480 a604b9f1d640dedab606265b0b60976e 285 SUPERFAMILY SSF53271 92 260 1.99E-41 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_01480 a604b9f1d640dedab606265b0b60976e 285 Gene3D G3DSA:3.40.50.2020 74 274 7.4E-65 T 13-10-2018 RA13_01480 a604b9f1d640dedab606265b0b60976e 285 SUPERFAMILY SSF46785 2 73 1.2E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_18645 acd23fa85a7547a254a64d642b321158 461 SMART SM00098 50 460 2.1E-222 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_18645 acd23fa85a7547a254a64d642b321158 461 SUPERFAMILY SSF53649 32 459 6.11E-123 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_18645 acd23fa85a7547a254a64d642b321158 461 ProSitePatterns PS00123 Alkaline phosphatase active site. 105 113 - T 13-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_18645 acd23fa85a7547a254a64d642b321158 461 PRINTS PR00113 Alkaline phosphatase signature 105 120 1.1E-43 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_18645 acd23fa85a7547a254a64d642b321158 461 PRINTS PR00113 Alkaline phosphatase signature 49 69 1.1E-43 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_18645 acd23fa85a7547a254a64d642b321158 461 PRINTS PR00113 Alkaline phosphatase signature 142 162 1.1E-43 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_18645 acd23fa85a7547a254a64d642b321158 461 PRINTS PR00113 Alkaline phosphatase signature 192 202 1.1E-43 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_18645 acd23fa85a7547a254a64d642b321158 461 PRINTS PR00113 Alkaline phosphatase signature 258 287 1.1E-43 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_18645 acd23fa85a7547a254a64d642b321158 461 Gene3D G3DSA:3.40.720.10 53 449 2.7E-139 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_18645 acd23fa85a7547a254a64d642b321158 461 Gene3D G3DSA:1.10.60.40 334 419 2.7E-139 T 13-10-2018 RA13_18645 acd23fa85a7547a254a64d642b321158 461 Pfam PF00245 Alkaline phosphatase 49 458 4.1E-140 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 RA13_17140 b199b59a0664d25b4dd24eee14095e6c 165 SMART SM00835 31 138 0.0077 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_17140 b199b59a0664d25b4dd24eee14095e6c 165 Pfam PF07883 Cupin domain 51 105 4.7E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RA13_17140 b199b59a0664d25b4dd24eee14095e6c 165 Gene3D G3DSA:2.60.120.10 33 127 2.7E-14 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_17140 b199b59a0664d25b4dd24eee14095e6c 165 SUPERFAMILY SSF51182 20 123 1.44E-18 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_17140 b199b59a0664d25b4dd24eee14095e6c 165 PIRSF PIRSF019307 1 164 1.3E-64 T 13-10-2018 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type RA13_18060 3004794be3727e67309b972f63c8ece8 495 Pfam PF00474 Sodium:solute symporter family 35 428 7.7E-23 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_18060 3004794be3727e67309b972f63c8ece8 495 Gene3D G3DSA:1.20.1730.10 22 493 1.8E-33 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RA13_18940 16fdfeebae1af8fcbcaf4cdb0d5ad285 327 SUPERFAMILY SSF53850 30 254 2.92E-47 T 13-10-2018 RA13_18940 16fdfeebae1af8fcbcaf4cdb0d5ad285 327 Gene3D G3DSA:3.40.190.10 34 309 4.1E-91 T 13-10-2018 RA13_18940 16fdfeebae1af8fcbcaf4cdb0d5ad285 327 Pfam PF09084 NMT1/THI5 like 41 253 9.0E-25 T 13-10-2018 IPR015168 SsuA/THI5-like RA13_18940 16fdfeebae1af8fcbcaf4cdb0d5ad285 327 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 32 319 8.2E-104 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 RA13_18940 16fdfeebae1af8fcbcaf4cdb0d5ad285 327 SMART SM00062 31 253 1.9E-33 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_18940 16fdfeebae1af8fcbcaf4cdb0d5ad285 327 Gene3D G3DSA:3.40.190.10 112 211 4.1E-91 T 13-10-2018 RA13_12845 2853904f7358e6e42cbd50e59aeb66e3 540 Pfam PF14158 YndJ-like protein 29 281 1.1E-74 T 13-10-2018 IPR025450 YndJ-like protein RA13_19500 d31bbcdc64e84b1d4f1c9d967fbfc77f 406 Pfam PF07690 Major Facilitator Superfamily 13 245 3.3E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19500 d31bbcdc64e84b1d4f1c9d967fbfc77f 406 Pfam PF07690 Major Facilitator Superfamily 251 391 1.2E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19500 d31bbcdc64e84b1d4f1c9d967fbfc77f 406 Gene3D G3DSA:1.20.1250.20 1 188 5.1E-21 T 13-10-2018 RA13_19500 d31bbcdc64e84b1d4f1c9d967fbfc77f 406 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 79 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_19500 d31bbcdc64e84b1d4f1c9d967fbfc77f 406 SUPERFAMILY SSF103473 7 395 4.58E-45 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_19500 d31bbcdc64e84b1d4f1c9d967fbfc77f 406 Gene3D G3DSA:1.20.1250.20 200 395 1.5E-18 T 13-10-2018 RA13_16230 3c9a33e9a767ff17f1080957b73c04b0 342 Gene3D G3DSA:3.80.30.30 116 342 1.2E-90 T 13-10-2018 RA13_16230 3c9a33e9a767ff17f1080957b73c04b0 342 Gene3D G3DSA:3.40.50.12110 3 115 3.6E-46 T 13-10-2018 RA13_16230 3c9a33e9a767ff17f1080957b73c04b0 342 TIGRFAM TIGR04070 photo_TT_lyase: spore photoproduct lyase 5 342 4.0E-155 T 13-10-2018 IPR023897 Spore photoproduct lyase GO:0003913 RA13_16230 3c9a33e9a767ff17f1080957b73c04b0 342 SUPERFAMILY SSF102114 84 250 4.05E-6 T 13-10-2018 RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 SMART SM00843 906 971 6.1E-39 T 13-10-2018 IPR018541 FtsK gamma domain RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 SUPERFAMILY SSF52540 593 883 8.5E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 Pfam PF01580 FtsK/SpoIIIE family 620 759 2.2E-50 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 Gene3D G3DSA:1.10.10.10 901 967 2.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 Gene3D G3DSA:3.30.980.40 513 616 2.7E-36 T 13-10-2018 RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 Gene3D G3DSA:3.40.50.300 617 896 1.4E-112 T 13-10-2018 RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 Pfam PF09397 Ftsk gamma domain 908 969 5.1E-30 T 13-10-2018 IPR018541 FtsK gamma domain RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 SMART SM00382 655 832 3.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_07775 9ae97f2ae44eda52baee96ebb596e9fe 976 SUPERFAMILY SSF46785 907 971 1.63E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20315 d25624102eef2457be7e35588569edc8 285 Pfam PF13739 Domain of unknown function (DUF4163) 86 160 1.2E-7 T 13-10-2018 IPR025303 Deacetylase PdaC RA13_20315 d25624102eef2457be7e35588569edc8 285 Pfam PF11738 Protein of unknown function (DUF3298) 190 271 5.2E-20 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 RA13_20315 d25624102eef2457be7e35588569edc8 285 Gene3D G3DSA:3.90.640.20 187 285 2.2E-42 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily RA13_20315 d25624102eef2457be7e35588569edc8 285 Gene3D G3DSA:3.30.565.40 76 186 3.3E-30 T 13-10-2018 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 SUPERFAMILY SSF51735 3 168 1.92E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 5.7E-41 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 SUPERFAMILY SSF55347 152 314 3.87E-74 T 13-10-2018 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 SMART SM00846 3 152 4.5E-98 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 PIRSF PIRSF000149 1 334 9.1E-143 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 3.3E-141 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 Gene3D G3DSA:3.30.360.10 151 315 8.8E-161 T 13-10-2018 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 2.2E-72 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05450 e10b4a89f16b90505c74f6a04e3d913c 335 Gene3D G3DSA:3.40.50.720 4 329 8.8E-161 T 13-10-2018 RA13_17770 8a12076103384b9562b918775e8a2be2 284 Gene3D G3DSA:2.20.28.50 28 62 4.0E-45 T 13-10-2018 RA13_17770 8a12076103384b9562b918775e8a2be2 284 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 282 1.4E-87 T 13-10-2018 IPR003797 DegV RA13_17770 8a12076103384b9562b918775e8a2be2 284 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 4 280 1.7E-92 T 13-10-2018 IPR003797 DegV RA13_17770 8a12076103384b9562b918775e8a2be2 284 SUPERFAMILY SSF82549 1 283 1.54E-89 T 13-10-2018 RA13_17770 8a12076103384b9562b918775e8a2be2 284 Gene3D G3DSA:3.40.50.10440 5 136 4.0E-45 T 13-10-2018 RA13_17770 8a12076103384b9562b918775e8a2be2 284 Gene3D G3DSA:3.30.1180.10 156 284 2.5E-47 T 13-10-2018 RA13_02940 26ef9755335f63df05ddfc9cd9d8dd78 111 Pfam PF03551 Transcriptional regulator PadR-like family 21 88 1.4E-14 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RA13_02940 26ef9755335f63df05ddfc9cd9d8dd78 111 SUPERFAMILY SSF46785 7 92 5.96E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_02940 26ef9755335f63df05ddfc9cd9d8dd78 111 Gene3D G3DSA:1.10.10.10 10 109 2.6E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_04700 dd2d9c0206440dc66ebd9ae66f7a469b 305 Gene3D G3DSA:1.10.260.150 47 305 2.2E-88 T 13-10-2018 RA13_04700 dd2d9c0206440dc66ebd9ae66f7a469b 305 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 82 225 1.8E-53 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RA13_04700 dd2d9c0206440dc66ebd9ae66f7a469b 305 Hamap MF_01140 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU [tagU]. 9 305 46.135 T 13-10-2018 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU RA13_04700 dd2d9c0206440dc66ebd9ae66f7a469b 305 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 83 224 1.1E-48 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 SMART SM00938 8 109 1.8E-36 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 Pfam PF00543 Nitrogen regulatory protein P-II 8 109 2.9E-31 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 Gene3D G3DSA:3.30.70.120 1 116 1.3E-43 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 PRINTS PR00340 P-II protein signature 6 21 2.8E-20 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 PRINTS PR00340 P-II protein signature 56 79 2.8E-20 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 PRINTS PR00340 P-II protein signature 87 107 2.8E-20 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 PRINTS PR00340 P-II protein signature 27 45 2.8E-20 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 ProSitePatterns PS00638 P-II protein C-terminal region signature. 87 100 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RA13_04245 8a9a0bf2a090b051ccdfde609d3486e8 116 SUPERFAMILY SSF54913 5 116 1.43E-32 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 SUPERFAMILY SSF46785 165 224 1.42E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 SUPERFAMILY SSF52172 6 183 9.82E-36 T 13-10-2018 IPR011006 CheY-like superfamily RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 Pfam PF00072 Response regulator receiver domain 9 120 1.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 Pfam PF04703 FaeA-like protein 165 208 9.9E-7 T 13-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 ProDom PD007170 TRANSCRIPTION REGULATORY REGULATION FIMBRIA FIMBRIAL PLASMID ACTIVATOR PAPI OPERON PEFI 165 208 0.003 T 13-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 Gene3D G3DSA:3.40.50.2300 3 143 1.4E-34 T 13-10-2018 RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 PIRSF PIRSF006171 5 227 4.2E-82 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 Gene3D G3DSA:1.10.10.10 164 216 7.6E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21135 68af8d0d1ba1966496211172cb8c25e1 227 SMART SM00448 7 120 2.9E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 PIRSF PIRSF000185 8 426 7.2E-167 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 Gene3D G3DSA:1.10.8.1210 380 426 1.2E-16 T 13-10-2018 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 SMART SM00839 195 424 1.3E-92 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 48 175 3.2E-54 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 104 118 7.2E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 226 246 7.2E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 184 206 7.2E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 352 363 7.2E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 Gene3D G3DSA:3.40.50.10860 45 180 7.7E-99 T 13-10-2018 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 193 424 1.5E-74 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 SUPERFAMILY SSF51735 193 425 2.49E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 112 125 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 Gene3D G3DSA:1.10.8.1210 21 44 7.7E-99 T 13-10-2018 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 Gene3D G3DSA:3.40.50.720 200 353 2.0E-82 T 13-10-2018 RA13_18580 737aca3a6ab9d0dd8798fa10448325ef 426 SUPERFAMILY SSF53223 17 195 3.84E-66 T 13-10-2018 RA13_05150 911118265f6aeaaf472369662e7000c5 151 Gene3D G3DSA:3.10.450.30 37 151 4.4E-48 T 13-10-2018 RA13_05150 911118265f6aeaaf472369662e7000c5 151 Pfam PF00545 ribonuclease 61 149 2.5E-24 T 13-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 RA13_05150 911118265f6aeaaf472369662e7000c5 151 PRINTS PR00117 Barnase signature 68 85 7.5E-56 T 13-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 RA13_05150 911118265f6aeaaf472369662e7000c5 151 PRINTS PR00117 Barnase signature 88 106 7.5E-56 T 13-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 RA13_05150 911118265f6aeaaf472369662e7000c5 151 PRINTS PR00117 Barnase signature 109 128 7.5E-56 T 13-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 RA13_05150 911118265f6aeaaf472369662e7000c5 151 PRINTS PR00117 Barnase signature 48 65 7.5E-56 T 13-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 RA13_05150 911118265f6aeaaf472369662e7000c5 151 PRINTS PR00117 Barnase signature 131 149 7.5E-56 T 13-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 RA13_05150 911118265f6aeaaf472369662e7000c5 151 PIRSF PIRSF001013 1 151 4.1E-73 T 13-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 RA13_05150 911118265f6aeaaf472369662e7000c5 151 SUPERFAMILY SSF53933 44 151 3.12E-39 T 13-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 RA13_18880 279a34b2c7705d7e8ac891de3e444b69 236 Pfam PF04519 Polymer-forming cytoskeletal 18 85 1.3E-9 T 13-10-2018 IPR007607 Bactofilin A/B RA13_21280 d7a04785e0263e58235dba55e90beb04 304 Pfam PF05721 Phytanoyl-CoA dioxygenase (PhyH) 34 239 6.6E-10 T 13-10-2018 IPR008775 Phytanoyl-CoA dioxygenase RA13_21280 d7a04785e0263e58235dba55e90beb04 304 SUPERFAMILY SSF51197 21 301 1.1E-52 T 13-10-2018 RA13_21280 d7a04785e0263e58235dba55e90beb04 304 Gene3D G3DSA:2.60.120.620 12 269 5.2E-20 T 13-10-2018 RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 Gene3D G3DSA:2.40.50.140 45 136 6.5E-10 T 13-10-2018 RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 Pfam PF17191 RecG wedge domain 8 164 6.5E-17 T 13-10-2018 IPR033454 RecG, wedge domain RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 SMART SM00490 487 572 1.5E-20 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 Gene3D G3DSA:3.40.50.300 440 612 8.4E-58 T 13-10-2018 RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 SUPERFAMILY SSF52540 172 435 2.32E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 Pfam PF00270 DEAD/DEAH box helicase 260 414 2.5E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 SUPERFAMILY SSF52540 368 628 1.3E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 SMART SM00487 252 441 5.6E-34 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 Pfam PF00271 Helicase conserved C-terminal domain 451 571 3.4E-20 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 SUPERFAMILY SSF50249 2 168 7.2E-31 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 Gene3D G3DSA:3.40.50.300 194 433 2.0E-91 T 13-10-2018 RA13_15245 be826ffdc8d96e4bfe9958adcc14f315 681 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 25 647 6.9E-263 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 RA13_10870 130593d08df68c83fd388193e4b831a9 194 SUPERFAMILY SSF88659 92 166 1.87E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_10870 130593d08df68c83fd388193e4b831a9 194 Pfam PF04542 Sigma-70 region 2 8 74 1.1E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_10870 130593d08df68c83fd388193e4b831a9 194 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 30 61 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_10870 130593d08df68c83fd388193e4b831a9 194 Pfam PF08281 Sigma-70, region 4 110 159 6.9E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_10870 130593d08df68c83fd388193e4b831a9 194 SUPERFAMILY SSF88946 3 90 2.9E-22 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_10870 130593d08df68c83fd388193e4b831a9 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 165 7.4E-31 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_10870 130593d08df68c83fd388193e4b831a9 194 Gene3D G3DSA:1.10.1740.10 1 71 1.1E-23 T 13-10-2018 RA13_10870 130593d08df68c83fd388193e4b831a9 194 Gene3D G3DSA:1.10.10.10 89 167 5.9E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07265 7c2d8277420428c4b5a9973368cd5fa5 351 Gene3D G3DSA:3.30.200.20 1 101 8.1E-22 T 13-10-2018 RA13_07265 7c2d8277420428c4b5a9973368cd5fa5 351 TIGRFAM TIGR02906 spore_CotS: spore coat protein, CotS family 27 337 3.5E-103 T 13-10-2018 IPR014255 Spore coat protein CotS RA13_07265 7c2d8277420428c4b5a9973368cd5fa5 351 SUPERFAMILY SSF56112 9 336 6.46E-30 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_07265 7c2d8277420428c4b5a9973368cd5fa5 351 Gene3D G3DSA:3.90.1200.10 102 338 2.9E-59 T 13-10-2018 RA13_18915 036bc47ceef3b9ba185387cd76f9caa5 66 Gene3D G3DSA:1.10.260.40 1 65 1.1E-22 T 13-10-2018 RA13_18915 036bc47ceef3b9ba185387cd76f9caa5 66 SMART SM00530 4 59 4.7E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_18915 036bc47ceef3b9ba185387cd76f9caa5 66 SUPERFAMILY SSF47413 2 63 1.96E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_18915 036bc47ceef3b9ba185387cd76f9caa5 66 Pfam PF01381 Helix-turn-helix 5 53 8.8E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_19605 88a0de898adb2aef82720b2a3542172f 320 Gene3D G3DSA:3.40.190.10 123 249 5.4E-58 T 13-10-2018 RA13_19605 88a0de898adb2aef82720b2a3542172f 320 Gene3D G3DSA:3.40.190.150 28 313 5.4E-58 T 13-10-2018 RA13_19605 88a0de898adb2aef82720b2a3542172f 320 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 59 316 2.9E-20 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 RA13_19605 88a0de898adb2aef82720b2a3542172f 320 SUPERFAMILY SSF53850 34 275 7.97E-8 T 13-10-2018 RA13_19605 88a0de898adb2aef82720b2a3542172f 320 PIRSF PIRSF017082 3 320 3.0E-95 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 RA13_16545 60be579675986f055218596ebea1eecd 271 Gene3D G3DSA:3.60.21.10 44 256 2.2E-23 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_16545 60be579675986f055218596ebea1eecd 271 SUPERFAMILY SSF56300 46 270 9.88E-34 T 13-10-2018 RA13_16545 60be579675986f055218596ebea1eecd 271 Pfam PF00149 Calcineurin-like phosphoesterase 46 209 1.1E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_14875 8c0b9e9ff96e191275c3387612d75b61 157 Gene3D G3DSA:3.30.300.70 1 81 2.3E-29 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily RA13_14875 8c0b9e9ff96e191275c3387612d75b61 157 SUPERFAMILY SSF74942 85 156 2.09E-21 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily RA13_14875 8c0b9e9ff96e191275c3387612d75b61 157 Gene3D G3DSA:2.30.30.180 88 154 2.9E-26 T 13-10-2018 RA13_14875 8c0b9e9ff96e191275c3387612d75b61 157 SUPERFAMILY SSF75420 3 84 1.44E-26 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily RA13_14875 8c0b9e9ff96e191275c3387612d75b61 157 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 7 156 24.786 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 RA13_14875 8c0b9e9ff96e191275c3387612d75b61 157 Pfam PF17384 RimP C-terminal SH3 domain 87 156 9.3E-23 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal RA13_14875 8c0b9e9ff96e191275c3387612d75b61 157 Pfam PF02576 RimP N-terminal domain 13 84 1.7E-29 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 14 34 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 PRINTS PR01005 Flagellar hook-associated protein signature 134 154 6.3E-8 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 PRINTS PR01005 Flagellar hook-associated protein signature 14 37 6.3E-8 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 PRINTS PR01005 Flagellar hook-associated protein signature 167 191 6.3E-8 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 SUPERFAMILY SSF64518 151 500 1.96E-20 T 13-10-2018 RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 500 2.1E-125 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 455 500 1.7E-12 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RA13_04825 6067b2a97b58abf7b8f7a5de2100d703 507 Pfam PF00460 Flagella basal body rod protein 8 38 9.5E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RA13_20540 3d8626337faf49c8064d3319c38625b2 181 Gene3D G3DSA:3.40.630.30 2 177 6.7E-53 T 13-10-2018 RA13_20540 3d8626337faf49c8064d3319c38625b2 181 SUPERFAMILY SSF55729 6 174 7.44E-46 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_20540 3d8626337faf49c8064d3319c38625b2 181 Pfam PF13302 Acetyltransferase (GNAT) domain 12 149 2.4E-25 T 13-10-2018 IPR000182 GNAT domain RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 SUPERFAMILY SSF52540 3 227 1.39E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 Gene3D G3DSA:3.40.50.300 1 237 1.5E-56 T 13-10-2018 RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 Gene3D G3DSA:3.40.50.300 251 495 1.2E-39 T 13-10-2018 RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 Pfam PF00005 ABC transporter 274 429 1.2E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 SUPERFAMILY SSF52540 257 490 2.66E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 Pfam PF00005 ABC transporter 21 169 3.5E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_06710 060c4614e558d8c6f52d4625a614c20f 510 SMART SM00382 29 216 2.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_20920 d8ef5f4ce2296e634827ca6fd6d16504 152 SMART SM00860 22 135 1.1E-9 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RA13_20920 d8ef5f4ce2296e634827ca6fd6d16504 152 Pfam PF14567 SMI1-KNR4 cell-wall 7 137 2.7E-32 T 13-10-2018 RA13_20920 d8ef5f4ce2296e634827ca6fd6d16504 152 SUPERFAMILY SSF160631 3 149 1.7E-37 T 13-10-2018 RA13_20920 d8ef5f4ce2296e634827ca6fd6d16504 152 Gene3D G3DSA:3.40.1580.10 1 152 4.4E-41 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily RA13_08535 13478cb4aba293f15fc7356556970995 245 Pfam PF01138 3' exoribonuclease family, domain 1 10 137 1.1E-22 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_08535 13478cb4aba293f15fc7356556970995 245 Hamap MF_00564 Ribonuclease PH [rph]. 11 238 44.256 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RA13_08535 13478cb4aba293f15fc7356556970995 245 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 13-10-2018 IPR018336 Ribonuclease PH, conserved site RA13_08535 13478cb4aba293f15fc7356556970995 245 Pfam PF03725 3' exoribonuclease family, domain 2 159 225 3.7E-8 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_08535 13478cb4aba293f15fc7356556970995 245 Gene3D G3DSA:3.30.230.70 1 245 4.9E-62 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_08535 13478cb4aba293f15fc7356556970995 245 SUPERFAMILY SSF54211 1 140 1.06E-43 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_08535 13478cb4aba293f15fc7356556970995 245 SUPERFAMILY SSF55666 153 236 4.97E-23 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RA13_08535 13478cb4aba293f15fc7356556970995 245 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 237 1.2E-116 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RA13_06605 2a322508445e0362b0447692039f4d2b 183 SUPERFAMILY SSF52499 2 181 6.54E-52 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_06605 2a322508445e0362b0447692039f4d2b 183 Pfam PF00857 Isochorismatase family 4 177 2.8E-39 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RA13_06605 2a322508445e0362b0447692039f4d2b 183 Gene3D G3DSA:3.40.50.850 1 183 2.2E-55 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_08000 d5f49ef084a54789e9ea51fc831ad78d 146 TIGRFAM TIGR02874 spore_ytfJ: sporulation protein YtfJ 3 133 4.8E-60 T 13-10-2018 IPR014229 Sporulation protein YtfJ RA13_08000 d5f49ef084a54789e9ea51fc831ad78d 146 PIRSF PIRSF021377 1 144 7.0E-62 T 13-10-2018 IPR014229 Sporulation protein YtfJ RA13_08000 d5f49ef084a54789e9ea51fc831ad78d 146 Pfam PF09579 Sporulation protein YtfJ (Spore_YtfJ) 31 124 2.4E-29 T 13-10-2018 IPR014229 Sporulation protein YtfJ RA13_14850 4e521d9c2806d03da1eba3afced4a6cc 92 SUPERFAMILY SSF103007 3 92 4.97E-32 T 13-10-2018 IPR036746 TT1725-like superfamily RA13_14850 4e521d9c2806d03da1eba3afced4a6cc 92 Gene3D G3DSA:3.30.70.1120 1 92 3.1E-25 T 13-10-2018 IPR036746 TT1725-like superfamily RA13_14850 4e521d9c2806d03da1eba3afced4a6cc 92 Pfam PF04456 Protein of unknown function (DUF503) 2 87 4.5E-32 T 13-10-2018 IPR007546 Protein of unknown function DUF503 RA13_03200 7d44f5a1c382b5e31685584f23405b72 452 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 435 2.3E-207 T 13-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 RA13_03200 7d44f5a1c382b5e31685584f23405b72 452 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 435 2.3E-207 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 RA13_03200 7d44f5a1c382b5e31685584f23405b72 452 PIRSF PIRSF006351 1 442 1.2E-157 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 RA13_03200 7d44f5a1c382b5e31685584f23405b72 452 Pfam PF02378 Phosphotransferase system, EIIC 29 359 7.4E-79 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_09025 61d1fbf664321527afaff545a4677e86 422 Gene3D G3DSA:1.10.8.60 149 224 2.6E-17 T 13-10-2018 RA13_09025 61d1fbf664321527afaff545a4677e86 422 Gene3D G3DSA:1.20.272.10 226 330 4.4E-43 T 13-10-2018 RA13_09025 61d1fbf664321527afaff545a4677e86 422 Gene3D G3DSA:3.40.50.300 1 147 8.7E-38 T 13-10-2018 RA13_09025 61d1fbf664321527afaff545a4677e86 422 Pfam PF16193 AAA C-terminal domain 172 251 2.3E-26 T 13-10-2018 IPR032423 AAA C-terminal domain RA13_09025 61d1fbf664321527afaff545a4677e86 422 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 125 4.9E-15 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RA13_09025 61d1fbf664321527afaff545a4677e86 422 SMART SM00382 37 149 3.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_09025 61d1fbf664321527afaff545a4677e86 422 SUPERFAMILY SSF48019 237 420 2.04E-73 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RA13_09025 61d1fbf664321527afaff545a4677e86 422 SUPERFAMILY SSF52540 2 227 4.06E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09025 61d1fbf664321527afaff545a4677e86 422 Pfam PF12002 MgsA AAA+ ATPase C terminal 252 417 1.4E-67 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal RA13_09025 61d1fbf664321527afaff545a4677e86 422 Gene3D G3DSA:1.10.3710.10 331 422 4.2E-25 T 13-10-2018 RA13_16960 305728270a56cab9639622cd66d9d63a 466 ProDom PD032508 PHAGE-LIKE PBSX XKDK ELEMENT PHAGE LIN1278 SHEATH YQBL RELATED TAIL 333 465 8.0E-60 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain RA13_16960 305728270a56cab9639622cd66d9d63a 466 Gene3D G3DSA:3.30.160.610 97 177 4.8E-26 T 13-10-2018 RA13_16960 305728270a56cab9639622cd66d9d63a 466 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 204 351 7.0E-33 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain RA13_16960 305728270a56cab9639622cd66d9d63a 466 Gene3D G3DSA:3.40.50.11790 208 379 2.4E-62 T 13-10-2018 RA13_16960 305728270a56cab9639622cd66d9d63a 466 Pfam PF17481 Phage tail sheath protein beta-sandwich domain 102 199 3.4E-9 T 13-10-2018 IPR035326 Phage tail sheath protein, beta-sandwich domain RA13_16960 305728270a56cab9639622cd66d9d63a 466 Pfam PF17482 Phage tail sheath C-terminal domain 358 465 6.6E-24 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain RA13_16960 305728270a56cab9639622cd66d9d63a 466 Gene3D G3DSA:1.10.10.2290 269 349 2.4E-62 T 13-10-2018 RA13_16960 305728270a56cab9639622cd66d9d63a 466 Gene3D G3DSA:3.30.360.90 396 466 5.4E-19 T 13-10-2018 RA13_16960 305728270a56cab9639622cd66d9d63a 466 Gene3D G3DSA:3.30.1490.360 26 93 9.8E-22 T 13-10-2018 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 114 135 1.8E-14 T 13-10-2018 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 92 112 1.8E-14 T 13-10-2018 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 1.8E-14 T 13-10-2018 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 1.8E-14 T 13-10-2018 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 228 252 1.8E-14 T 13-10-2018 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 Pfam PF00155 Aminotransferase class I and II 31 385 3.7E-77 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 Gene3D G3DSA:3.40.640.10 62 284 8.0E-141 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 SUPERFAMILY SSF53383 3 391 7.18E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 Gene3D G3DSA:3.90.1150.10 25 385 8.0E-141 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_11250 f92362160aaf70b046f9c80c4c858fd2 393 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 177 4.5E-36 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 Gene3D G3DSA:3.40.50.970 2 196 2.3E-70 T 13-10-2018 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 443 5.0E-159 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 Pfam PF16582 Middle domain of thiamine pyrophosphate 219 401 2.2E-16 T 13-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 3 569 38.41 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 Gene3D G3DSA:3.40.50.970 378 579 2.1E-73 T 13-10-2018 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 Gene3D G3DSA:3.40.50.1220 197 377 3.6E-63 T 13-10-2018 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 SUPERFAMILY SSF52518 13 187 7.02E-34 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 425 548 4.2E-7 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 SUPERFAMILY SSF52467 166 371 3.31E-13 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 SUPERFAMILY SSF52518 384 571 5.89E-29 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_07300 c8ff28055155b22bcf84c561c2e7b2f6 579 PIRSF PIRSF004983 2 576 3.6E-209 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 RA13_19730 5eb44f2d9310b3a50dd396ed55123df6 387 SUPERFAMILY SSF53448 2 264 5.23E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19730 5eb44f2d9310b3a50dd396ed55123df6 387 Gene3D G3DSA:3.90.550.10 1 264 1.1E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19730 5eb44f2d9310b3a50dd396ed55123df6 387 Pfam PF00535 Glycosyl transferase family 2 4 134 3.3E-27 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 Pfam PF01546 Peptidase family M20/M25/M40 141 404 2.9E-13 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 74 83 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 Gene3D G3DSA:3.40.630.10 5 402 8.9E-186 T 13-10-2018 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 TIGRFAM TIGR01882 peptidase-T: peptidase T 3 410 1.6E-221 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 SUPERFAMILY SSF53187 3 406 4.28E-83 T 13-10-2018 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 Pfam PF07687 Peptidase dimerisation domain 209 310 4.6E-11 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 140 179 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 PIRSF PIRSF037215 1 410 1.4E-195 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 SUPERFAMILY SSF55031 211 322 1.15E-38 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 Hamap MF_00550 Peptidase T [pepT]. 2 406 60.015 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 RA13_03060 a38e1d3a6e0b07c830fe06fdf8a09ff3 410 Gene3D G3DSA:3.30.70.360 211 321 8.9E-186 T 13-10-2018 RA13_05260 54b0701e5c4f2c539c70823b78b2401e 329 Pfam PF12698 ABC-2 family transporter protein 18 316 4.6E-15 T 13-10-2018 RA13_07245 fe46f0db0fbab4da7108e3cf57af41f4 798 Gene3D G3DSA:3.40.50.2000 14 794 0.0 T 13-10-2018 RA13_07245 fe46f0db0fbab4da7108e3cf57af41f4 798 SUPERFAMILY SSF53756 5 797 1.65E-296 T 13-10-2018 RA13_07245 fe46f0db0fbab4da7108e3cf57af41f4 798 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 5 794 0.0 T 13-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RA13_07245 fe46f0db0fbab4da7108e3cf57af41f4 798 PIRSF PIRSF000460 2 798 3.7E-247 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RA13_07245 fe46f0db0fbab4da7108e3cf57af41f4 798 Gene3D G3DSA:3.40.50.2000 460 787 0.0 T 13-10-2018 RA13_07245 fe46f0db0fbab4da7108e3cf57af41f4 798 Pfam PF00343 Carbohydrate phosphorylase 93 794 0.0 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RA13_07245 fe46f0db0fbab4da7108e3cf57af41f4 798 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 638 650 - T 13-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 RA13_07830 8f44ea16c32ac4c59d9a56de5097615c 210 Gene3D G3DSA:3.40.630.30 1 210 8.8E-88 T 13-10-2018 RA13_07830 8f44ea16c32ac4c59d9a56de5097615c 210 PIRSF PIRSF021278 2 210 1.7E-85 T 13-10-2018 IPR024699 Acetoin utilization protein AcuA GO:0019152|GO:0045150 RA13_07830 8f44ea16c32ac4c59d9a56de5097615c 210 Pfam PF00583 Acetyltransferase (GNAT) family 43 118 6.6E-6 T 13-10-2018 IPR000182 GNAT domain RA13_07830 8f44ea16c32ac4c59d9a56de5097615c 210 SUPERFAMILY SSF55729 36 119 6.03E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 Gene3D G3DSA:2.60.40.420 176 356 1.3E-68 T 13-10-2018 IPR008972 Cupredoxin RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 Pfam PF00394 Multicopper oxidase 232 308 1.1E-4 T 13-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 Pfam PF07731 Multicopper oxidase 373 509 5.1E-23 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 SUPERFAMILY SSF49503 183 307 5.59E-28 T 13-10-2018 IPR008972 Cupredoxin RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 Gene3D G3DSA:2.60.40.420 357 513 1.4E-54 T 13-10-2018 IPR008972 Cupredoxin RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 Pfam PF07732 Multicopper oxidase 101 178 7.7E-5 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 Pfam PF07732 Multicopper oxidase 45 81 1.3E-6 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 SUPERFAMILY SSF49503 3 180 1.78E-36 T 13-10-2018 IPR008972 Cupredoxin RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 Gene3D G3DSA:2.60.40.420 1 175 3.5E-67 T 13-10-2018 IPR008972 Cupredoxin RA13_20255 9d03949dcfc68d130d23ee1e204cfb4e 513 SUPERFAMILY SSF49503 363 508 1.9E-32 T 13-10-2018 IPR008972 Cupredoxin RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 SMART SM00052 1 200 5.7E-4 T 13-10-2018 IPR001633 EAL domain RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 SUPERFAMILY SSF109604 186 405 1.35E-45 T 13-10-2018 RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 PIRSF PIRSF003180 1 408 4.4E-153 T 13-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 Gene3D G3DSA:3.20.20.450 1 201 3.3E-20 T 13-10-2018 IPR035919 EAL domain superfamily RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 Pfam PF08668 HDOD domain 210 329 3.3E-20 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 SUPERFAMILY SSF141868 3 196 1.44E-28 T 13-10-2018 IPR035919 EAL domain superfamily RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 Pfam PF00563 EAL domain 46 195 2.0E-14 T 13-10-2018 IPR001633 EAL domain RA13_06615 d909a12a314e15fbf2f8df60b46089b4 410 Gene3D G3DSA:1.10.3210.10 204 393 1.8E-28 T 13-10-2018 RA13_19905 c3122852aa5306ca5eab7e0d87dfbb41 428 SUPERFAMILY SSF53850 18 425 6.92E-58 T 13-10-2018 RA13_19905 c3122852aa5306ca5eab7e0d87dfbb41 428 Gene3D G3DSA:3.40.190.10 146 420 4.9E-161 T 13-10-2018 RA13_19905 c3122852aa5306ca5eab7e0d87dfbb41 428 Gene3D G3DSA:3.40.190.10 36 371 4.9E-161 T 13-10-2018 RA13_19905 c3122852aa5306ca5eab7e0d87dfbb41 428 Pfam PF13416 Bacterial extracellular solute-binding protein 53 354 3.3E-25 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RA13_02605 7c042665c04f02a2dcb598fb390f57d7 278 SUPERFAMILY SSF51658 5 273 1.14E-67 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_02605 7c042665c04f02a2dcb598fb390f57d7 278 Gene3D G3DSA:3.20.20.150 1 278 3.1E-79 T 13-10-2018 RA13_02605 7c042665c04f02a2dcb598fb390f57d7 278 Pfam PF01261 Xylose isomerase-like TIM barrel 20 225 3.7E-31 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RA13_17115 e8762ae6d9361a18bc4901bb44fc9114 466 SUPERFAMILY SSF51556 2 465 8.66E-181 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_17115 e8762ae6d9361a18bc4901bb44fc9114 466 Gene3D G3DSA:3.20.20.140 7 464 2.5E-193 T 13-10-2018 RA13_17115 e8762ae6d9361a18bc4901bb44fc9114 466 Gene3D G3DSA:1.10.2020.10 46 136 2.5E-193 T 13-10-2018 RA13_17115 e8762ae6d9361a18bc4901bb44fc9114 466 Pfam PF02614 Glucuronate isomerase 1 464 2.8E-230 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 RA13_17115 e8762ae6d9361a18bc4901bb44fc9114 466 Hamap MF_00675 Uronate isomerase [uxaC]. 2 466 49.63 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 RA13_05460 07f4f7aac501206026d77f70b3d50521 253 Pfam PF00121 Triosephosphate isomerase 5 246 4.7E-95 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05460 07f4f7aac501206026d77f70b3d50521 253 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 1.1E-57 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05460 07f4f7aac501206026d77f70b3d50521 253 SUPERFAMILY SSF51351 1 248 5.11E-94 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05460 07f4f7aac501206026d77f70b3d50521 253 Gene3D G3DSA:3.20.20.70 2 252 4.0E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_05460 07f4f7aac501206026d77f70b3d50521 253 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05460 07f4f7aac501206026d77f70b3d50521 253 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 61.523 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06740 19b2d1fa98acfd65c797fdb52bf02482 624 SUPERFAMILY SSF56601 221 624 2.41E-92 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_06740 19b2d1fa98acfd65c797fdb52bf02482 624 Gene3D G3DSA:3.40.710.10 328 621 3.1E-164 T 13-10-2018 RA13_06740 19b2d1fa98acfd65c797fdb52bf02482 624 Gene3D G3DSA:3.90.1310.20 59 536 3.1E-164 T 13-10-2018 RA13_06740 19b2d1fa98acfd65c797fdb52bf02482 624 SUPERFAMILY SSF53955 54 268 1.88E-71 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_06740 19b2d1fa98acfd65c797fdb52bf02482 624 Gene3D G3DSA:1.10.3810.10 75 270 3.1E-164 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_06740 19b2d1fa98acfd65c797fdb52bf02482 624 Pfam PF00912 Transglycosylase 63 238 6.9E-61 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_06740 19b2d1fa98acfd65c797fdb52bf02482 624 Pfam PF00905 Penicillin binding protein transpeptidase domain 350 590 8.0E-24 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 SUPERFAMILY SSF53067 3 280 4.61E-39 T 13-10-2018 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 Hamap MF_00520 Ribulokinase [araB]. 1 546 52.189 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 Gene3D G3DSA:3.30.420.40 280 549 7.3E-84 T 13-10-2018 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 SUPERFAMILY SSF53067 280 537 1.42E-55 T 13-10-2018 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 3 541 4.1E-273 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 PIRSF PIRSF000538 1 542 3.7E-62 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 Gene3D G3DSA:3.30.420.40 1 279 9.6E-70 T 13-10-2018 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 274 1.9E-14 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 397 417 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_08325 60e0275d16fa3bba8b3fe49a550c3a16 567 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 288 486 9.2E-41 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RA13_02595 68da86aef7c25f579770af70e10c683b 344 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 239 7.5E-15 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RA13_02595 68da86aef7c25f579770af70e10c683b 344 Gene3D G3DSA:3.40.50.720 4 320 2.3E-121 T 13-10-2018 RA13_02595 68da86aef7c25f579770af70e10c683b 344 SUPERFAMILY SSF51735 3 154 5.12E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_02595 68da86aef7c25f579770af70e10c683b 344 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 337 51.845 T 13-10-2018 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 RA13_02595 68da86aef7c25f579770af70e10c683b 344 SUPERFAMILY SSF55347 132 284 8.24E-17 T 13-10-2018 RA13_02595 68da86aef7c25f579770af70e10c683b 344 Gene3D G3DSA:3.30.360.10 144 266 2.3E-121 T 13-10-2018 RA13_02595 68da86aef7c25f579770af70e10c683b 344 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 125 1.8E-28 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RA13_17905 bbd7335c095778b00f4081f6928ffd18 280 Gene3D G3DSA:1.10.600.10 1 273 1.7E-79 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_17905 bbd7335c095778b00f4081f6928ffd18 280 SUPERFAMILY SSF48576 7 263 1.29E-54 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_17905 bbd7335c095778b00f4081f6928ffd18 280 Pfam PF00494 Squalene/phytoene synthase 16 262 2.0E-49 T 13-10-2018 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 Gene3D G3DSA:2.40.110.10 121 234 1.8E-43 T 13-10-2018 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 9.5E-25 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 Gene3D G3DSA:1.10.540.10 1 120 1.4E-45 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 SUPERFAMILY SSF47203 227 378 6.6E-62 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 Gene3D G3DSA:1.20.140.10 235 379 1.4E-58 T 13-10-2018 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 376 4.4E-53 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 SUPERFAMILY SSF56645 1 242 3.93E-90 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 PIRSF PIRSF016578 4 377 3.5E-22 T 13-10-2018 RA13_03875 7c04ea53f7bf1a285d45981fc2e33be6 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 2.7E-41 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RA13_04130 c632bf7ba403763b26aad148c2154a07 63 Pfam PF05532 CsbD-like 9 60 1.7E-14 T 13-10-2018 IPR008462 CsbD-like domain RA13_04130 c632bf7ba403763b26aad148c2154a07 63 Gene3D G3DSA:1.10.1470.10 8 62 8.8E-9 T 13-10-2018 IPR036629 YjbJ superfamily RA13_04130 c632bf7ba403763b26aad148c2154a07 63 SUPERFAMILY SSF69047 8 61 4.45E-10 T 13-10-2018 IPR036629 YjbJ superfamily RA13_15715 b766799516a35a2ffffbd591fd3704b1 345 SUPERFAMILY SSF55797 224 342 1.26E-22 T 13-10-2018 IPR035940 CAP superfamily RA13_15715 b766799516a35a2ffffbd591fd3704b1 345 Pfam PF00188 Cysteine-rich secretory protein family 231 336 2.5E-15 T 13-10-2018 IPR014044 CAP domain RA13_15715 b766799516a35a2ffffbd591fd3704b1 345 Pfam PF14504 CAP-associated N-terminal 61 200 4.4E-52 T 13-10-2018 IPR029410 CAP-associated domain RA13_15715 b766799516a35a2ffffbd591fd3704b1 345 Gene3D G3DSA:3.40.33.10 25 345 6.9E-110 T 13-10-2018 IPR035940 CAP superfamily RA13_17710 ab1029330dbf46c8edb8c8889b1e1df1 258 SUPERFAMILY SSF53633 1 253 7.33E-66 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_17710 ab1029330dbf46c8edb8c8889b1e1df1 258 PIRSF PIRSF000728 1 254 3.0E-86 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_17710 ab1029330dbf46c8edb8c8889b1e1df1 258 Hamap MF_00082 Acetylglutamate kinase [argB]. 2 244 40.508 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_17710 ab1029330dbf46c8edb8c8889b1e1df1 258 TIGRFAM TIGR00761 argB: acetylglutamate kinase 4 232 1.0E-84 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RA13_17710 ab1029330dbf46c8edb8c8889b1e1df1 258 Pfam PF00696 Amino acid kinase family 3 234 9.6E-42 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RA13_17710 ab1029330dbf46c8edb8c8889b1e1df1 258 Gene3D G3DSA:3.40.1160.10 1 239 1.7E-74 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_12220 b54c8b748402247f2f8d53af8330c3c5 321 Gene3D G3DSA:1.20.1530.20 1 307 1.2E-113 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RA13_12220 b54c8b748402247f2f8d53af8330c3c5 321 Pfam PF01758 Sodium Bile acid symporter family 41 220 6.9E-50 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RA13_12220 b54c8b748402247f2f8d53af8330c3c5 321 TIGRFAM TIGR00841 bass: bile acid transporter 3 311 1.5E-106 T 13-10-2018 IPR004710 Bile acid:sodium symporter RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 2.9E-13 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 93 2.9E-13 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 75 83 2.9E-13 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 122 24.306 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 Gene3D G3DSA:1.10.1200.120 1 124 1.2E-43 T 13-10-2018 IPR036019 Gated mechanosensitive channel RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 13-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 123 8.9E-59 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 SUPERFAMILY SSF81330 10 117 7.45E-36 T 13-10-2018 IPR036019 Gated mechanosensitive channel RA13_04320 4a2965fd83c5f04d3c9822cbed659ce6 128 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 121 1.6E-46 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 Gene3D G3DSA:1.10.3810.10 98 290 9.3E-206 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 Pfam PF00912 Transglycosylase 88 263 8.5E-64 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 SUPERFAMILY SSF53955 76 282 9.84E-73 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 Gene3D G3DSA:3.40.710.10 332 659 9.3E-206 T 13-10-2018 RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 Pfam PF00905 Penicillin binding protein transpeptidase domain 356 644 6.6E-48 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 SUPERFAMILY SSF49265 711 791 1.18E-7 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 SUPERFAMILY SSF56601 245 704 2.53E-103 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 98 648 2.1E-173 T 13-10-2018 RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 Gene3D G3DSA:3.90.1310.20 83 544 9.3E-206 T 13-10-2018 RA13_11275 ed8fdbb841a6d1db3e4a15dc3887bcfe 917 Gene3D G3DSA:2.60.40.10 710 802 1.8E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_16165 7ad85c5c68c0e9b8933a0033915ab570 286 SUPERFAMILY SSF56300 56 284 4.5E-35 T 13-10-2018 RA13_16165 7ad85c5c68c0e9b8933a0033915ab570 286 Pfam PF00149 Calcineurin-like phosphoesterase 58 223 1.7E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_16165 7ad85c5c68c0e9b8933a0033915ab570 286 Gene3D G3DSA:3.60.21.10 56 249 1.1E-22 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 Gene3D G3DSA:1.10.10.10 116 178 6.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 Gene3D G3DSA:1.10.1740.10 2 114 1.1E-27 T 13-10-2018 RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 SUPERFAMILY SSF88946 5 99 1.65E-27 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 SUPERFAMILY SSF88659 119 175 2.11E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 Pfam PF04542 Sigma-70 region 2 24 91 1.6E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 174 1.0E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_03145 92444dc54ba29ba5d65f7141bb080c6a 178 Pfam PF08281 Sigma-70, region 4 122 168 6.7E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_11625 8e2ca71c11d96772049c146fea0379a8 38 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 6 28 3.0E-15 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_11625 8e2ca71c11d96772049c146fea0379a8 38 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 6 29 6.7E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_05850 843b98689a414abc68d78d271e4963dd 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 131 153 7.5E-48 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RA13_05850 843b98689a414abc68d78d271e4963dd 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 90 111 7.5E-48 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RA13_05850 843b98689a414abc68d78d271e4963dd 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 237 255 7.5E-48 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RA13_05850 843b98689a414abc68d78d271e4963dd 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 154 174 7.5E-48 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RA13_05850 843b98689a414abc68d78d271e4963dd 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 194 211 7.5E-48 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RA13_05850 843b98689a414abc68d78d271e4963dd 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 14 31 7.5E-48 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RA13_05850 843b98689a414abc68d78d271e4963dd 292 SUPERFAMILY SSF63829 6 285 1.61E-61 T 13-10-2018 RA13_05850 843b98689a414abc68d78d271e4963dd 292 Gene3D G3DSA:2.120.10.30 2 290 2.4E-98 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RA13_05850 843b98689a414abc68d78d271e4963dd 292 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 14 256 2.2E-79 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region RA13_01660 dd108292c02a7d150b9c76c18fedc256 182 Gene3D G3DSA:3.40.50.850 1 181 3.6E-45 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_01660 dd108292c02a7d150b9c76c18fedc256 182 SUPERFAMILY SSF52499 3 179 7.2E-46 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RA13_01660 dd108292c02a7d150b9c76c18fedc256 182 Pfam PF00857 Isochorismatase family 6 175 1.6E-31 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 RA13_16195 95c08681e62f8f3e43aefa1d855d2bad 389 Gene3D G3DSA:3.40.640.10 58 278 4.6E-130 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_16195 95c08681e62f8f3e43aefa1d855d2bad 389 Pfam PF00155 Aminotransferase class I and II 29 375 1.5E-64 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_16195 95c08681e62f8f3e43aefa1d855d2bad 389 SUPERFAMILY SSF53383 4 376 2.82E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_16195 95c08681e62f8f3e43aefa1d855d2bad 389 Gene3D G3DSA:3.90.1150.10 29 375 4.6E-130 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_16195 95c08681e62f8f3e43aefa1d855d2bad 389 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 228 241 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RA13_12240 5dc655e5abab209406ad7c005eca97b1 495 Gene3D G3DSA:3.40.309.10 270 459 1.0E-202 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_12240 5dc655e5abab209406ad7c005eca97b1 495 Pfam PF00171 Aldehyde dehydrogenase family 29 489 3.6E-191 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_12240 5dc655e5abab209406ad7c005eca97b1 495 Gene3D G3DSA:3.40.605.10 24 487 1.0E-202 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_12240 5dc655e5abab209406ad7c005eca97b1 495 SUPERFAMILY SSF53720 14 492 9.29E-185 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_12240 5dc655e5abab209406ad7c005eca97b1 495 PIRSF PIRSF036492 43 494 2.4E-83 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RA13_12240 5dc655e5abab209406ad7c005eca97b1 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 265 272 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_10895 2dbecff94c7827fbbe530b3921926381 82 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 7 69 1.3E-20 T 13-10-2018 RA13_10895 2dbecff94c7827fbbe530b3921926381 82 PRINTS PR00352 3Fe-4S ferredoxin signature 55 67 5.4E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RA13_10895 2dbecff94c7827fbbe530b3921926381 82 PRINTS PR00352 3Fe-4S ferredoxin signature 7 18 5.4E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RA13_10895 2dbecff94c7827fbbe530b3921926381 82 PRINTS PR00352 3Fe-4S ferredoxin signature 18 28 5.4E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 RA13_10895 2dbecff94c7827fbbe530b3921926381 82 SUPERFAMILY SSF54862 4 73 3.76E-13 T 13-10-2018 RA13_10895 2dbecff94c7827fbbe530b3921926381 82 Gene3D G3DSA:3.30.70.20 2 82 2.9E-35 T 13-10-2018 RA13_06220 b6e9205eb9d75c6a0e5d4ae5bc4c6f64 436 Gene3D G3DSA:3.30.160.660 213 345 4.7E-38 T 13-10-2018 RA13_06220 b6e9205eb9d75c6a0e5d4ae5bc4c6f64 436 Gene3D G3DSA:2.40.50.820 94 176 4.7E-38 T 13-10-2018 RA13_06220 b6e9205eb9d75c6a0e5d4ae5bc4c6f64 436 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 65 394 2.8E-63 T 13-10-2018 IPR003776 YcaO-like domain RA13_06220 b6e9205eb9d75c6a0e5d4ae5bc4c6f64 436 Gene3D G3DSA:1.10.490.140 73 395 4.7E-38 T 13-10-2018 RA13_06220 b6e9205eb9d75c6a0e5d4ae5bc4c6f64 436 TIGRFAM TIGR03604 TOMM_cyclo_SagD: thiazole/oxazole-forming peptide maturase, SagD family component 65 436 3.4E-94 T 13-10-2018 IPR027624 Thiazole/oxazole-forming peptide maturase, SagD family component RA13_07615 7e82d47b903d53dab76ab80a7d407361 286 SUPERFAMILY SSF161098 2 286 1.23E-61 T 13-10-2018 IPR035906 MetI-like superfamily RA13_07615 7e82d47b903d53dab76ab80a7d407361 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 278 2.8E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_07615 7e82d47b903d53dab76ab80a7d407361 286 Gene3D G3DSA:1.10.3720.10 1 277 4.4E-73 T 13-10-2018 IPR035906 MetI-like superfamily RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 39 56 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 136 2.4E-40 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 PIRSF PIRSF001467 7 142 1.4E-40 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 Gene3D G3DSA:2.40.100.10 1 143 1.7E-58 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 SUPERFAMILY SSF50891 13 137 1.04E-46 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 56 4.5E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 127 4.5E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 111 4.5E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 18 33 4.5E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RA13_10680 6f43a8a7b8bf61ad0718c2f2e4f06ac8 143 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 84 99 4.5E-25 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RA13_20565 7f724b021007fd2b6a54f63d928446a6 171 Gene3D G3DSA:1.20.1260.10 1 156 3.3E-64 T 13-10-2018 IPR012347 Ferritin-like RA13_20565 7f724b021007fd2b6a54f63d928446a6 171 Pfam PF11553 Protein of unknown function (DUF3231) 2 166 1.4E-39 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 RA13_21420 d794717a8adae16a53249a0f1ed4102f 544 SUPERFAMILY SSF81296 23 120 7.0E-22 T 13-10-2018 IPR014756 Immunoglobulin E-set RA13_21420 d794717a8adae16a53249a0f1ed4102f 544 Pfam PF13115 YtkA-like 455 527 7.9E-9 T 13-10-2018 IPR032693 YtkA-like domain RA13_21420 d794717a8adae16a53249a0f1ed4102f 544 Gene3D G3DSA:2.60.40.1220 24 125 1.5E-24 T 13-10-2018 RA13_21420 d794717a8adae16a53249a0f1ed4102f 544 Pfam PF05425 Copper resistance protein D 331 422 1.8E-17 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 RA13_21420 d794717a8adae16a53249a0f1ed4102f 544 Pfam PF04234 CopC domain 24 120 1.3E-19 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 SUPERFAMILY SSF52768 4 294 4.68E-96 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 Gene3D G3DSA:3.40.800.10 2 296 2.2E-115 T 13-10-2018 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 PIRSF PIRSF036979 1 294 2.0E-40 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 PRINTS PR00116 Arginase signature 218 247 2.6E-44 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 PRINTS PR00116 Arginase signature 253 267 2.6E-44 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 PRINTS PR00116 Arginase signature 93 108 2.6E-44 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 PRINTS PR00116 Arginase signature 116 143 2.6E-44 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 PRINTS PR00116 Arginase signature 170 188 2.6E-44 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 ProSitePatterns PS01053 Arginase family signature. 221 242 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 Pfam PF00491 Arginase family 4 291 5.0E-83 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02230 f8c54c12b4d588ef5682a3b80c2e832a 296 TIGRFAM TIGR01229 rocF_arginase: arginase 6 296 5.0E-122 T 13-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 RA13_09030 d1cc7360b615e4c309043b2adce98339 138 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 124 3.2E-33 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type RA13_09030 d1cc7360b615e4c309043b2adce98339 138 Gene3D G3DSA:1.10.10.10 1 138 3.8E-51 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09030 d1cc7360b615e4c309043b2adce98339 138 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site RA13_09030 d1cc7360b615e4c309043b2adce98339 138 SUPERFAMILY SSF46785 2 125 5.78E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_09030 d1cc7360b615e4c309043b2adce98339 138 Pfam PF02082 Transcriptional regulator 1 82 1.0E-26 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type RA13_12655 064a8cbc50e057b0eb10f1e2ba2042ec 381 Gene3D G3DSA:3.40.50.1820 2 378 5.8E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_12655 064a8cbc50e057b0eb10f1e2ba2042ec 381 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 7 138 1.5E-9 T 13-10-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 RA13_12655 064a8cbc50e057b0eb10f1e2ba2042ec 381 SUPERFAMILY SSF53474 23 322 2.01E-15 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_15130 752950dd9f99cf11bbe61a06f690351b 299 Gene3D G3DSA:3.40.50.450 30 294 1.2E-93 T 13-10-2018 RA13_15130 752950dd9f99cf11bbe61a06f690351b 299 SUPERFAMILY SSF102405 82 288 8.7E-40 T 13-10-2018 RA13_15130 752950dd9f99cf11bbe61a06f690351b 299 Pfam PF02481 DNA recombination-mediator protein A 72 279 1.1E-75 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RA13_15130 752950dd9f99cf11bbe61a06f690351b 299 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 72 288 2.5E-85 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RA13_17085 d7da80648fe4021cdec95e4b2c7cdf41 153 Gene3D G3DSA:1.20.120.450 1 144 4.0E-40 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_17085 d7da80648fe4021cdec95e4b2c7cdf41 153 SUPERFAMILY SSF109854 5 150 5.49E-33 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_17085 d7da80648fe4021cdec95e4b2c7cdf41 153 Pfam PF05163 DinB family 1 150 6.2E-36 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB RA13_15875 538f2ae5e15c078a31f5cbeaa0b6c55d 274 SUPERFAMILY SSF88713 70 269 1.68E-42 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_15875 538f2ae5e15c078a31f5cbeaa0b6c55d 274 Pfam PF01522 Polysaccharide deacetylase 79 200 6.5E-26 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_15875 538f2ae5e15c078a31f5cbeaa0b6c55d 274 Gene3D G3DSA:3.20.20.370 33 273 1.4E-47 T 13-10-2018 RA13_03610 31a433457332ac6ff748abee673c0159 151 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 2 147 4.5E-26 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RA13_03610 31a433457332ac6ff748abee673c0159 151 SUPERFAMILY SSF51182 2 149 9.31E-43 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_03610 31a433457332ac6ff748abee673c0159 151 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 2 146 7.0E-26 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RA13_03610 31a433457332ac6ff748abee673c0159 151 Gene3D G3DSA:2.60.120.10 1 150 1.5E-56 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_21615 0f23ea55802f0c4323bdfd3ca806588a 287 SUPERFAMILY SSF53474 6 280 3.01E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21615 0f23ea55802f0c4323bdfd3ca806588a 287 Pfam PF00561 alpha/beta hydrolase fold 31 268 6.5E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_21615 0f23ea55802f0c4323bdfd3ca806588a 287 Gene3D G3DSA:3.40.50.1820 3 281 2.2E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_04035 25aeeef5c84f996aa4c9d72bfaad1520 172 SUPERFAMILY SSF81573 76 133 2.48E-9 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily RA13_04035 25aeeef5c84f996aa4c9d72bfaad1520 172 Hamap MF_01398 ATP synthase subunit b [atpF]. 13 150 13.352 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RA13_04035 25aeeef5c84f996aa4c9d72bfaad1520 172 Pfam PF00430 ATP synthase B/B' CF(0) 19 149 3.9E-36 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RA13_04035 25aeeef5c84f996aa4c9d72bfaad1520 172 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 22 168 6.1E-49 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 RA13_03030 c3e87302060905fcbebf5267a0da7777 261 Gene3D G3DSA:3.40.50.720 1 261 4.0E-83 T 13-10-2018 RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 4.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.2E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_03030 c3e87302060905fcbebf5267a0da7777 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0042 T 13-10-2018 RA13_03030 c3e87302060905fcbebf5267a0da7777 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 259 4.0E-66 T 13-10-2018 RA13_03030 c3e87302060905fcbebf5267a0da7777 261 SUPERFAMILY SSF51735 7 260 7.05E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_03030 c3e87302060905fcbebf5267a0da7777 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_03030 c3e87302060905fcbebf5267a0da7777 261 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 8 261 7.7E-114 T 13-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 ProSitePatterns PS01218 TatC family signature. 147 166 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 Pfam PF00902 Sec-independent protein translocase protein (TatC) 11 214 8.2E-53 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 96 122 1.0E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 147 175 1.0E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 78 96 1.0E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 1.0E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 232 14.629 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_00185 5a1dc2cbb7b6c3e2facdd4e1aee74189 241 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 8 219 4.4E-56 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RA13_14840 88de9faccf9f2593cbbe94b659c9a31e 309 SUPERFAMILY SSF55120 1 236 5.44E-79 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_14840 88de9faccf9f2593cbbe94b659c9a31e 309 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 24 178 6.5E-58 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RA13_14840 88de9faccf9f2593cbbe94b659c9a31e 309 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 2 217 2.3E-89 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_14840 88de9faccf9f2593cbbe94b659c9a31e 309 Gene3D G3DSA:3.30.2350.10 1 245 1.0E-90 T 13-10-2018 RA13_14840 88de9faccf9f2593cbbe94b659c9a31e 309 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 179 237 9.6E-13 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 RA13_14840 88de9faccf9f2593cbbe94b659c9a31e 309 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 2 303 18.933 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_07845 868588e2b59909a602899b7d54140d63 422 Gene3D G3DSA:1.10.240.10 225 327 5.1E-42 T 13-10-2018 RA13_07845 868588e2b59909a602899b7d54140d63 422 Pfam PF01479 S4 domain 357 402 1.7E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07845 868588e2b59909a602899b7d54140d63 422 SMART SM00363 356 417 1.5E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07845 868588e2b59909a602899b7d54140d63 422 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 2 421 46.414 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 RA13_07845 868588e2b59909a602899b7d54140d63 422 Pfam PF00579 tRNA synthetases class I (W and Y) 29 325 5.9E-92 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_07845 868588e2b59909a602899b7d54140d63 422 Gene3D G3DSA:3.40.50.620 1 224 4.3E-89 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_07845 868588e2b59909a602899b7d54140d63 422 SUPERFAMILY SSF52374 2 325 1.77E-106 T 13-10-2018 RA13_07845 868588e2b59909a602899b7d54140d63 422 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 50 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_07845 868588e2b59909a602899b7d54140d63 422 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 422 1.5E-151 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_07845 868588e2b59909a602899b7d54140d63 422 SUPERFAMILY SSF55174 323 421 1.28E-24 T 13-10-2018 RA13_07845 868588e2b59909a602899b7d54140d63 422 Gene3D G3DSA:3.10.290.10 328 422 1.9E-33 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_07845 868588e2b59909a602899b7d54140d63 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 44 66 1.6E-31 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_07845 868588e2b59909a602899b7d54140d63 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 162 177 1.6E-31 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_07845 868588e2b59909a602899b7d54140d63 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 218 230 1.6E-31 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_07845 868588e2b59909a602899b7d54140d63 422 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 183 205 1.6E-31 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RA13_01565 85b86958704d335016eecd3e489c0885 146 Pfam PF03885 Protein of unknown function (DUF327) 13 145 3.5E-38 T 13-10-2018 IPR005585 Protein of unknown function DUF327 RA13_01565 85b86958704d335016eecd3e489c0885 146 SUPERFAMILY SSF158397 27 146 1.96E-34 T 13-10-2018 IPR024042 TM1646-like domain superfamily RA13_01565 85b86958704d335016eecd3e489c0885 146 Gene3D G3DSA:1.20.120.490 25 146 6.3E-37 T 13-10-2018 IPR024042 TM1646-like domain superfamily RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 Pfam PF12419 SNF2 Helicase protein 267 392 1.8E-34 T 13-10-2018 IPR022138 Helicase SWF/SNF-related RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 SUPERFAMILY SSF52540 669 920 3.01E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 SMART SM00487 446 636 2.5E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 Gene3D G3DSA:1.20.120.850 688 911 2.2E-86 T 13-10-2018 RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 Pfam PF00176 SNF2 family N-terminal domain 450 734 3.5E-58 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 Gene3D G3DSA:3.40.50.300 674 876 2.2E-86 T 13-10-2018 RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 Pfam PF00271 Helicase conserved C-terminal domain 750 862 1.3E-20 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 Gene3D G3DSA:3.40.50.10810 451 665 1.1E-66 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 SMART SM00490 779 862 9.7E-22 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_04350 abcbb9328068ec9b7d1f17abcbc99417 924 SUPERFAMILY SSF52540 429 664 2.24E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 Pfam PF13404 AsnC-type helix-turn-helix domain 13 52 1.0E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 Pfam PF01037 Lrp/AsnC ligand binding domain 79 148 1.7E-11 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 Gene3D G3DSA:3.30.70.920 66 158 2.8E-15 T 13-10-2018 RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 SUPERFAMILY SSF46785 11 71 2.67E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 SMART SM00344 12 118 8.4E-42 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 Gene3D G3DSA:1.10.10.10 2 65 5.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 SUPERFAMILY SSF54909 73 151 5.63E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 9.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 9.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 9.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_04460 ad7b518d2e98521a4f8d0e7bad9f76de 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RA13_09475 8b0e01d3771981ce6f9d3f1de6f02a81 96 Pfam PF01985 CRS1 / YhbY (CRM) domain 2 85 5.0E-23 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RA13_09475 8b0e01d3771981ce6f9d3f1de6f02a81 96 SMART SM01103 2 85 9.6E-42 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RA13_09475 8b0e01d3771981ce6f9d3f1de6f02a81 96 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 8 96 4.0E-42 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RA13_09475 8b0e01d3771981ce6f9d3f1de6f02a81 96 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 2 96 1.9E-44 T 13-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 RA13_09475 8b0e01d3771981ce6f9d3f1de6f02a81 96 SUPERFAMILY SSF75471 1 94 4.05E-32 T 13-10-2018 IPR035920 YhbY-like superfamily RA13_09475 8b0e01d3771981ce6f9d3f1de6f02a81 96 Gene3D G3DSA:3.30.110.60 1 96 3.1E-38 T 13-10-2018 IPR035920 YhbY-like superfamily RA13_05390 b5339631068246526d705685aaaeac5e 111 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 2 109 1.4E-17 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_05390 b5339631068246526d705685aaaeac5e 111 SUPERFAMILY SSF81606 3 110 2.35E-6 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_05390 b5339631068246526d705685aaaeac5e 111 Gene3D G3DSA:3.60.40.10 1 111 4.3E-19 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 180 5.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 228 5.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 129 5.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 43 60 5.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 209 5.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 245 265 5.6E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 Gene3D G3DSA:3.40.50.720 2 282 2.5E-84 T 13-10-2018 RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 190 209 2.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 118 129 2.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 178 2.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 177 205 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 SUPERFAMILY SSF51735 40 282 5.0E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18080 1d3afeb0b355455d5ce9e9b56226a656 285 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 51 280 4.4E-60 T 13-10-2018 RA13_11885 551a5b6aaa3e0cdd8b7fe52f807d6bc2 221 SUPERFAMILY SSF102588 2 212 3.53E-50 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RA13_11885 551a5b6aaa3e0cdd8b7fe52f807d6bc2 221 Pfam PF02585 GlcNAc-PI de-N-acetylase 6 135 2.9E-26 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RA13_11885 551a5b6aaa3e0cdd8b7fe52f807d6bc2 221 TIGRFAM TIGR04000 thiol_BshB2: bacillithiol biosynthesis deacetylase BshB2 3 219 3.1E-110 T 13-10-2018 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 RA13_11885 551a5b6aaa3e0cdd8b7fe52f807d6bc2 221 Gene3D G3DSA:3.40.50.10320 1 213 1.9E-47 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 SUPERFAMILY SSF110921 397 499 2.09E-19 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 11 27 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 SUPERFAMILY SSF51569 3 290 8.06E-97 T 13-10-2018 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 Pfam PF00682 HMGL-like 3 272 2.2E-95 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 198 211 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 SMART SM00917 368 501 1.7E-32 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 3 498 6.2E-247 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 Pfam PF08502 LeuA allosteric (dimerisation) domain 368 500 9.0E-36 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 Gene3D G3DSA:3.20.20.70 1 275 1.2E-113 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 Gene3D G3DSA:3.30.160.270 392 501 1.8E-10 T 13-10-2018 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 Gene3D G3DSA:1.10.238.260 279 391 5.2E-37 T 13-10-2018 RA13_08590 ae51c814e2e0a719e6b7a68a10a04390 518 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 1 510 42.704 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RA13_04100 bfe9f21b84e9da8d938670b1e589a709 226 SMART SM00327 30 223 1.5E-16 T 13-10-2018 IPR002035 von Willebrand factor, type A RA13_04100 bfe9f21b84e9da8d938670b1e589a709 226 SUPERFAMILY SSF53300 22 223 3.02E-27 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_04100 bfe9f21b84e9da8d938670b1e589a709 226 Gene3D G3DSA:3.40.50.410 26 226 1.2E-29 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_04100 bfe9f21b84e9da8d938670b1e589a709 226 Pfam PF00092 von Willebrand factor type A domain 32 214 7.9E-16 T 13-10-2018 IPR002035 von Willebrand factor, type A RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 SMART SM00382 362 547 3.6E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 Pfam PF00005 ABC transporter 353 500 5.6E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 SUPERFAMILY SSF90123 1 490 5.1E-41 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 Pfam PF00664 ABC transporter transmembrane region 18 281 3.1E-13 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 Gene3D G3DSA:1.20.1560.10 5 315 2.0E-24 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 5 531 2.1E-181 T 13-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 SUPERFAMILY SSF52540 333 570 2.02E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03130 62e045bdb7328eb3177b4ef3765e6bed 575 Gene3D G3DSA:3.40.50.300 328 572 2.3E-75 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00096 Glutamine amidotransferase superfamily signature 232 243 8.5E-12 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00096 Glutamine amidotransferase superfamily signature 205 214 8.5E-12 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00096 Glutamine amidotransferase superfamily signature 318 331 8.5E-12 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 Gene3D G3DSA:3.40.50.880 163 341 6.4E-36 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 202 216 3.8E-33 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 249 266 3.8E-33 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 164 178 3.8E-33 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 248 3.8E-33 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 274 285 3.8E-33 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 SUPERFAMILY SSF52021 1 135 7.85E-50 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 3 128 1.5E-49 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 SMART SM01097 1 130 4.3E-74 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 SUPERFAMILY SSF52317 137 343 1.19E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 Gene3D G3DSA:3.50.30.20 1 145 3.8E-53 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 347 43.708 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 4 343 8.9E-140 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00097 Anthranilate synthase component II signature 205 214 2.0E-7 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00097 Anthranilate synthase component II signature 232 243 2.0E-7 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 PRINTS PR00097 Anthranilate synthase component II signature 318 331 2.0E-7 T 13-10-2018 RA13_17700 3b3639112921b042828fccd8ba9e48cd 353 Pfam PF00117 Glutamine amidotransferase class-I 166 341 1.1E-47 T 13-10-2018 IPR017926 Glutamine amidotransferase RA13_01155 ad3bae59b5dc86937c92f3203b4bcbfd 143 PIRSF PIRSF005520 1 139 6.5E-53 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family RA13_01155 ad3bae59b5dc86937c92f3203b4bcbfd 143 SMART SM00535 1 134 6.3E-16 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RA13_01155 ad3bae59b5dc86937c92f3203b4bcbfd 143 Hamap MF_01468 Mini-ribonuclease 3 [mrnC]. 7 133 29.811 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family RA13_01155 ad3bae59b5dc86937c92f3203b4bcbfd 143 Pfam PF00636 Ribonuclease III domain 17 116 1.5E-17 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RA13_01155 ad3bae59b5dc86937c92f3203b4bcbfd 143 Gene3D G3DSA:1.10.1520.10 4 143 6.0E-53 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RA13_01155 ad3bae59b5dc86937c92f3203b4bcbfd 143 SUPERFAMILY SSF69065 9 130 1.48E-41 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RA13_07500 31497c41f58dc2e757fbba2090338a44 292 SMART SM00382 26 203 3.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_07500 31497c41f58dc2e757fbba2090338a44 292 SUPERFAMILY SSF52540 2 218 5.84E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07500 31497c41f58dc2e757fbba2090338a44 292 Pfam PF00005 ABC transporter 17 154 2.1E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_07500 31497c41f58dc2e757fbba2090338a44 292 Gene3D G3DSA:3.40.50.300 1 237 6.4E-48 T 13-10-2018 RA13_11025 449563a8f69cd9c2b087a43908a4b3ab 492 PIRSF PIRSF007466 1 492 9.3E-269 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 RA13_11025 449563a8f69cd9c2b087a43908a4b3ab 492 TIGRFAM TIGR02836 spore_IV_A: stage IV sporulation protein A 1 492 2.2E-273 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 RA13_11025 449563a8f69cd9c2b087a43908a4b3ab 492 SUPERFAMILY SSF52540 19 226 4.91E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11025 449563a8f69cd9c2b087a43908a4b3ab 492 Gene3D G3DSA:3.40.50.300 12 236 4.4E-10 T 13-10-2018 RA13_11025 449563a8f69cd9c2b087a43908a4b3ab 492 Pfam PF09547 Stage IV sporulation protein A (spore_IV_A) 2 492 5.4E-227 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 RA13_14155 11da46dbc95272b732ac402738f06653 300 SUPERFAMILY SSF64496 113 154 2.17E-5 T 13-10-2018 RA13_14155 11da46dbc95272b732ac402738f06653 300 SUPERFAMILY SSF82771 13 105 8.37E-15 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_14155 11da46dbc95272b732ac402738f06653 300 Pfam PF07460 NUMOD3 motif (2 copies) 166 186 0.056 T 13-10-2018 IPR003611 Nuclease associated modular domain 3 GO:0003677 RA13_14155 11da46dbc95272b732ac402738f06653 300 Pfam PF07460 NUMOD3 motif (2 copies) 132 160 1.2E-5 T 13-10-2018 IPR003611 Nuclease associated modular domain 3 GO:0003677 RA13_14155 11da46dbc95272b732ac402738f06653 300 Gene3D G3DSA:3.40.1440.10 12 106 3.6E-24 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_14155 11da46dbc95272b732ac402738f06653 300 SMART SM00465 12 106 4.2E-8 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_14155 11da46dbc95272b732ac402738f06653 300 SMART SM00496 148 164 16.0 T 13-10-2018 IPR003611 Nuclease associated modular domain 3 GO:0003677 RA13_14155 11da46dbc95272b732ac402738f06653 300 SMART SM00496 131 147 4.6E-4 T 13-10-2018 IPR003611 Nuclease associated modular domain 3 GO:0003677 RA13_14155 11da46dbc95272b732ac402738f06653 300 SMART SM00496 165 181 3.6 T 13-10-2018 IPR003611 Nuclease associated modular domain 3 GO:0003677 RA13_14155 11da46dbc95272b732ac402738f06653 300 SMART SM00496 110 126 320.0 T 13-10-2018 IPR003611 Nuclease associated modular domain 3 GO:0003677 RA13_14155 11da46dbc95272b732ac402738f06653 300 TIGRFAM TIGR01453 grpIintron_endo: group I intron endonuclease 13 225 1.2E-21 T 13-10-2018 IPR006350 Intron endonuclease, group I GO:0004519 RA13_14155 11da46dbc95272b732ac402738f06653 300 Pfam PF01541 GIY-YIG catalytic domain 13 99 1.5E-7 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_04665 e552a665e82bd3f45fa05959f37e6162 129 SUPERFAMILY SSF52374 1 125 7.78E-36 T 13-10-2018 RA13_04665 e552a665e82bd3f45fa05959f37e6162 129 TIGRFAM TIGR01518 g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase 4 126 3.2E-70 T 13-10-2018 IPR006409 Glycerol-3-phosphate cytidylyltransferase GO:0005737|GO:0019350|GO:0046872|GO:0047348 KEGG: 00564+2.7.7.39|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 RA13_04665 e552a665e82bd3f45fa05959f37e6162 129 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 68 6.8E-22 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_04665 e552a665e82bd3f45fa05959f37e6162 129 Pfam PF01467 Cytidylyltransferase-like 5 124 4.4E-23 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_04665 e552a665e82bd3f45fa05959f37e6162 129 Gene3D G3DSA:3.40.50.620 1 129 2.6E-44 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 Pfam PF00232 Glycosyl hydrolase family 1 7 475 2.3E-190 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 1.4E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 416 433 1.4E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 292 306 1.4E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 395 406 1.4E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 374 382 1.4E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 374 382 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 SUPERFAMILY SSF51445 8 477 1.1E-174 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 Gene3D G3DSA:3.20.20.80 2 478 2.7E-187 T 13-10-2018 RA13_21735 5898750b59d316ce676f0b520f6a1c52 478 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 13 27 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site RA13_09525 9d6b172e1e4d7a664d6959078ba77aed 347 SUPERFAMILY SSF48019 217 336 7.31E-26 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RA13_09525 9d6b172e1e4d7a664d6959078ba77aed 347 SUPERFAMILY SSF52540 6 214 5.49E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09525 9d6b172e1e4d7a664d6959078ba77aed 347 Gene3D G3DSA:1.20.272.10 214 347 1.4E-42 T 13-10-2018 RA13_09525 9d6b172e1e4d7a664d6959078ba77aed 347 Pfam PF06144 DNA polymerase III, delta subunit 18 193 2.9E-51 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 RA13_09525 9d6b172e1e4d7a664d6959078ba77aed 347 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 15 336 3.3E-83 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 RA13_09525 9d6b172e1e4d7a664d6959078ba77aed 347 Gene3D G3DSA:3.40.50.300 1 143 6.0E-47 T 13-10-2018 RA13_09525 9d6b172e1e4d7a664d6959078ba77aed 347 Gene3D G3DSA:1.10.8.60 144 213 6.7E-31 T 13-10-2018 RA13_18950 357726a093ede657968692f52927cbbc 483 Pfam PF00199 Catalase 7 388 5.7E-200 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 Pfam PF06628 Catalase-related immune-responsive 413 475 7.6E-27 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 ProSitePatterns PS00438 Catalase proximal active site signature. 43 59 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 PRINTS PR00067 Catalase signature 288 315 6.8E-76 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 PRINTS PR00067 Catalase signature 123 141 6.8E-76 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 PRINTS PR00067 Catalase signature 83 101 6.8E-76 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 PRINTS PR00067 Catalase signature 20 43 6.8E-76 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 PRINTS PR00067 Catalase signature 320 346 6.8E-76 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 PRINTS PR00067 Catalase signature 104 121 6.8E-76 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 333 341 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 SUPERFAMILY SSF56634 4 480 1.7E-220 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 SMART SM01060 7 391 1.1E-299 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18950 357726a093ede657968692f52927cbbc 483 Gene3D G3DSA:2.40.180.10 2 482 2.5E-235 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RA13_18950 357726a093ede657968692f52927cbbc 483 PIRSF PIRSF038928 1 481 3.8E-228 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_16760 896d4de3d1fc2dd66ff28c6e63254b18 349 SUPERFAMILY SSF51004 11 347 1.39E-50 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily RA13_16760 896d4de3d1fc2dd66ff28c6e63254b18 349 Pfam PF10282 Lactonase, 7-bladed beta-propeller 7 345 4.9E-132 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RA13_16760 896d4de3d1fc2dd66ff28c6e63254b18 349 Gene3D G3DSA:2.130.10.10 5 349 5.5E-128 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_21030 0845217c4bd015d3a0d15dfc1335afc6 93 Pfam PF01402 Ribbon-helix-helix protein, copG family 12 45 1.8E-5 T 13-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 RA13_21030 0845217c4bd015d3a0d15dfc1335afc6 93 Gene3D G3DSA:1.10.1220.10 1 93 2.0E-40 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RA13_21030 0845217c4bd015d3a0d15dfc1335afc6 93 SUPERFAMILY SSF47598 7 52 9.21E-6 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 RA13_10765 e22e60564d849e9cdb176d7409280310 184 SUPERFAMILY SSF51306 30 181 1.83E-47 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RA13_10765 e22e60564d849e9cdb176d7409280310 184 ProSitePatterns PS00760 Signal peptidases I lysine active site. 83 95 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RA13_10765 e22e60564d849e9cdb176d7409280310 184 ProSitePatterns PS00761 Signal peptidases I signature 3. 141 154 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RA13_10765 e22e60564d849e9cdb176d7409280310 184 Pfam PF00717 Peptidase S24-like 39 105 4.6E-18 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RA13_10765 e22e60564d849e9cdb176d7409280310 184 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 32 48 7.8E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_10765 e22e60564d849e9cdb176d7409280310 184 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 81 93 7.8E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_10765 e22e60564d849e9cdb176d7409280310 184 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 136 155 7.8E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_10765 e22e60564d849e9cdb176d7409280310 184 ProSitePatterns PS00501 Signal peptidases I serine active site. 41 48 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 RA13_10765 e22e60564d849e9cdb176d7409280310 184 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 15 178 3.8E-52 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_10765 e22e60564d849e9cdb176d7409280310 184 Gene3D G3DSA:2.10.109.10 62 184 2.2E-36 T 13-10-2018 RA13_12350 0d52653537cf0dec4708661b75e5f1b1 238 SMART SM00849 20 212 3.3E-30 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_12350 0d52653537cf0dec4708661b75e5f1b1 238 SUPERFAMILY SSF56281 10 225 6.98E-40 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_12350 0d52653537cf0dec4708661b75e5f1b1 238 Gene3D G3DSA:3.60.15.10 4 237 9.0E-36 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_12350 0d52653537cf0dec4708661b75e5f1b1 238 Pfam PF00753 Metallo-beta-lactamase superfamily 18 212 1.2E-27 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 Pfam PF01590 GAF domain 242 361 1.2E-4 T 13-10-2018 IPR003018 GAF domain GO:0005515 RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 Gene3D G3DSA:3.30.450.40 225 365 1.1E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 SMART SM00387 471 580 1.6E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 Gene3D G3DSA:3.30.565.10 433 589 1.6E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 Pfam PF06580 Histidine kinase 378 455 1.9E-23 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 Gene3D G3DSA:1.10.1760.20 42 223 2.0E-5 T 13-10-2018 RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 SUPERFAMILY SSF55781 244 364 1.35E-7 T 13-10-2018 RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 Pfam PF07694 5TMR of 5TMR-LYT 25 207 1.1E-58 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 SMART SM00065 238 373 7.2E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 SUPERFAMILY SSF55874 441 578 2.49E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_08230 aab45a3e2417c16b8989ae2be10cfde0 593 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 477 579 1.3E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 Gene3D G3DSA:3.40.630.10 13 461 2.4E-172 T 13-10-2018 RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 SUPERFAMILY SSF55031 184 365 9.84E-48 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 SUPERFAMILY SSF53187 11 462 8.2E-67 T 13-10-2018 RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 TIGRFAM TIGR01887 dipeptidaselike: putative dipeptidase 11 458 2.2E-171 T 13-10-2018 IPR010964 Peptidase M20A, peptidase V-related GO:0008270|GO:0016805 RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 Pfam PF01546 Peptidase family M20/M25/M40 84 459 4.7E-34 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 Gene3D G3DSA:3.30.70.360 204 291 2.4E-172 T 13-10-2018 RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 114 152 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RA13_07690 21dd86805ba0aab4a141959295eef7cf 463 Gene3D G3DSA:3.30.70.360 184 377 2.4E-172 T 13-10-2018 RA13_08990 141558bfe5515c2bce2fd8b0c5a29a65 147 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 35.282 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RA13_08990 141558bfe5515c2bce2fd8b0c5a29a65 147 Gene3D G3DSA:3.50.80.10 1 147 4.7E-60 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RA13_08990 141558bfe5515c2bce2fd8b0c5a29a65 147 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 146 5.1E-67 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RA13_08990 141558bfe5515c2bce2fd8b0c5a29a65 147 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 4.7E-57 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RA13_08990 141558bfe5515c2bce2fd8b0c5a29a65 147 SUPERFAMILY SSF69500 1 145 4.97E-58 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RA13_17500 eb23ab579720cd214371698d2e3ab0a4 211 SUPERFAMILY SSF81301 5 198 8.34E-59 T 13-10-2018 RA13_17500 eb23ab579720cd214371698d2e3ab0a4 211 Gene3D G3DSA:1.10.287.860 148 211 2.0E-30 T 13-10-2018 RA13_17500 eb23ab579720cd214371698d2e3ab0a4 211 Pfam PF04607 Region found in RelA / SpoT proteins 45 163 1.5E-36 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RA13_17500 eb23ab579720cd214371698d2e3ab0a4 211 Gene3D G3DSA:3.30.460.10 1 147 1.3E-57 T 13-10-2018 RA13_17500 eb23ab579720cd214371698d2e3ab0a4 211 SMART SM00954 45 165 3.6E-40 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 RA13_05190 99fb26c0c5090a561b622435186444e5 106 SUPERFAMILY SSF101386 2 104 2.24E-23 T 13-10-2018 RA13_05190 99fb26c0c5090a561b622435186444e5 106 PIRSF PIRSF036521 1 106 7.2E-55 T 13-10-2018 IPR011411 NTP Pyrophosphohydrolase MazG-related RA13_05190 99fb26c0c5090a561b622435186444e5 106 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 31 105 6.4E-11 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RA13_05190 99fb26c0c5090a561b622435186444e5 106 Gene3D G3DSA:1.10.287.1080 1 102 3.3E-27 T 13-10-2018 RA13_01075 c89b7dca58127155171baacb42f448a9 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.617 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RA13_01075 c89b7dca58127155171baacb42f448a9 156 SUPERFAMILY SSF47973 1 149 1.44E-61 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RA13_01075 c89b7dca58127155171baacb42f448a9 156 Gene3D G3DSA:1.10.455.10 2 156 4.8E-65 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RA13_01075 c89b7dca58127155171baacb42f448a9 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.7E-66 T 13-10-2018 IPR023798 Ribosomal protein S7 domain RA13_01075 c89b7dca58127155171baacb42f448a9 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_01075 c89b7dca58127155171baacb42f448a9 156 PIRSF PIRSF002122 5 156 2.0E-59 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 RA13_01075 c89b7dca58127155171baacb42f448a9 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 5.2E-71 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RA13_17440 968bee0d44771506ff1d774767ce8cc1 271 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 260 1.9E-102 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_17440 968bee0d44771506ff1d774767ce8cc1 271 Pfam PF08543 Phosphomethylpyrimidine kinase 13 258 1.0E-94 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RA13_17440 968bee0d44771506ff1d774767ce8cc1 271 Gene3D G3DSA:3.40.1190.20 1 270 3.5E-103 T 13-10-2018 IPR029056 Ribokinase-like RA13_17440 968bee0d44771506ff1d774767ce8cc1 271 SUPERFAMILY SSF53613 2 262 7.95E-83 T 13-10-2018 IPR029056 Ribokinase-like RA13_08760 8e9c4f8eb20d8e3cb52321970bc6d544 113 SUPERFAMILY SSF118010 1 110 3.4E-29 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily RA13_08760 8e9c4f8eb20d8e3cb52321970bc6d544 113 Pfam PF04327 Cysteine protease Prp 1 106 7.3E-24 T 13-10-2018 IPR007422 Cysteine protease Prp RA13_08760 8e9c4f8eb20d8e3cb52321970bc6d544 113 Gene3D G3DSA:3.30.70.1490 1 112 1.7E-30 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily RA13_07380 a64da41cac7a5db9e67a03a1617247fd 75 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 26.157 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RA13_07380 a64da41cac7a5db9e67a03a1617247fd 75 Pfam PF01809 Haemolytic domain 2 68 6.4E-33 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RA13_07380 a64da41cac7a5db9e67a03a1617247fd 75 SMART SM01234 1 68 9.0E-51 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RA13_07380 a64da41cac7a5db9e67a03a1617247fd 75 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 75 2.0E-39 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RA13_07380 a64da41cac7a5db9e67a03a1617247fd 75 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 6.0E-24 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RA13_07360 89d52d5b5825e789ee60779b165ab7b1 443 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 433 2.1E-120 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RA13_07360 89d52d5b5825e789ee60779b165ab7b1 443 PIRSF PIRSF006446 1 443 1.3E-112 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RA13_11145 a10643890ff8728ed08b410d8b387ced 167 Pfam PF00355 Rieske [2Fe-2S] domain 80 147 9.6E-12 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RA13_11145 a10643890ff8728ed08b410d8b387ced 167 SUPERFAMILY SSF50022 5 158 3.27E-30 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RA13_11145 a10643890ff8728ed08b410d8b387ced 167 Gene3D G3DSA:2.102.10.10 46 164 2.1E-21 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RA13_11145 a10643890ff8728ed08b410d8b387ced 167 Pfam PF08802 Cytochrome B6-F complex Fe-S subunit 6 35 1.2E-6 T 13-10-2018 IPR014909 Cytochrome b6-f complex Fe-S subunit GO:0009496|GO:0042651|GO:0051537|GO:0055114 KEGG: 00195+1.10.9.1|MetaCyc: PWY-101 RA13_02315 7121d50a0fe17ef7a538e4429918b0dc 180 SUPERFAMILY SSF46785 35 91 3.63E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_02315 7121d50a0fe17ef7a538e4429918b0dc 180 SUPERFAMILY SSF55252 121 175 1.05E-6 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 RA13_02315 7121d50a0fe17ef7a538e4429918b0dc 180 PRINTS PR01467 Bacterial arginine repressor signature 54 67 3.1E-5 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_02315 7121d50a0fe17ef7a538e4429918b0dc 180 PRINTS PR01467 Bacterial arginine repressor signature 70 85 3.1E-5 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_02315 7121d50a0fe17ef7a538e4429918b0dc 180 PRINTS PR01467 Bacterial arginine repressor signature 148 163 3.1E-5 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 RA13_02315 7121d50a0fe17ef7a538e4429918b0dc 180 Pfam PF01316 Arginine repressor, DNA binding domain 35 86 2.2E-10 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 RA13_02315 7121d50a0fe17ef7a538e4429918b0dc 180 Gene3D G3DSA:1.10.10.10 22 100 2.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00990 e9ce56743b653bb08eeca9580ac88a5b 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 45.85 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_00990 e9ce56743b653bb08eeca9580ac88a5b 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.5E-42 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00990 e9ce56743b653bb08eeca9580ac88a5b 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00990 e9ce56743b653bb08eeca9580ac88a5b 179 PIRSF PIRSF002161 1 179 1.3E-69 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00990 e9ce56743b653bb08eeca9580ac88a5b 179 SUPERFAMILY SSF55282 3 178 1.32E-79 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00990 e9ce56743b653bb08eeca9580ac88a5b 179 Pfam PF00281 Ribosomal protein L5 24 80 2.9E-28 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00990 e9ce56743b653bb08eeca9580ac88a5b 179 Gene3D G3DSA:3.30.1440.10 1 179 1.4E-84 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_10355 b7ec6959dc72387b61d3d1c9090c3d42 322 Pfam PF06081 Aromatic acid exporter family member 1 2 142 1.1E-54 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 RA13_10355 b7ec6959dc72387b61d3d1c9090c3d42 322 Gene3D G3DSA:1.20.120.940 141 314 5.4E-55 T 13-10-2018 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily RA13_10355 b7ec6959dc72387b61d3d1c9090c3d42 322 Pfam PF11728 Putative aromatic acid exporter C-terminal domain 146 310 2.1E-58 T 13-10-2018 IPR021062 Putative aromatic acid exporter, C-terminal RA13_01865 463322ada84dd440e436bd47fd987f55 204 TIGRFAM TIGR02841 spore_YyaC: putative sporulation protein YyaC 42 181 3.9E-70 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 RA13_01865 463322ada84dd440e436bd47fd987f55 204 Pfam PF06866 Protein of unknown function (DUF1256) 17 179 3.6E-68 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 RA13_01865 463322ada84dd440e436bd47fd987f55 204 SUPERFAMILY SSF53163 14 196 9.55E-57 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily RA13_01890 72accbec9cbf442d419d52c1d3573e2d 95 Gene3D G3DSA:3.30.70.60 1 95 5.7E-36 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RA13_01890 72accbec9cbf442d419d52c1d3573e2d 95 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 2.8E-35 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01890 72accbec9cbf442d419d52c1d3573e2d 95 ProSitePatterns PS01048 Ribosomal protein S6 signature. 44 53 - T 13-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 RA13_01890 72accbec9cbf442d419d52c1d3573e2d 95 Pfam PF01250 Ribosomal protein S6 3 92 3.0E-29 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01890 72accbec9cbf442d419d52c1d3573e2d 95 SUPERFAMILY SSF54995 1 95 3.4E-34 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01890 72accbec9cbf442d419d52c1d3573e2d 95 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 23.339 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RA13_01375 b5dbbcfbe123c3c6ea568a8074a8d600 338 SUPERFAMILY SSF56112 14 235 1.75E-24 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_01375 b5dbbcfbe123c3c6ea568a8074a8d600 338 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 34 55 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 RA13_01375 b5dbbcfbe123c3c6ea568a8074a8d600 338 Gene3D G3DSA:1.10.510.10 111 264 1.0E-24 T 13-10-2018 RA13_01375 b5dbbcfbe123c3c6ea568a8074a8d600 338 Pfam PF00069 Protein kinase domain 28 239 5.8E-14 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RA13_01375 b5dbbcfbe123c3c6ea568a8074a8d600 338 Gene3D G3DSA:3.30.200.20 22 110 1.0E-24 T 13-10-2018 RA13_01375 b5dbbcfbe123c3c6ea568a8074a8d600 338 SMART SM00220 28 265 2.4E-7 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RA13_11060 e11066e6b362b32c981f423ca405918c 148 Gene3D G3DSA:3.30.70.141 1 148 2.2E-64 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 2.6E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 2.6E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 2.6E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 2.6E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 2.6E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 112 120 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_11060 e11066e6b362b32c981f423ca405918c 148 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 136 37.342 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 Pfam PF00334 Nucleoside diphosphate kinase 2 135 9.9E-59 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 SMART SM00562 1 138 4.0E-89 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_11060 e11066e6b362b32c981f423ca405918c 148 SUPERFAMILY SSF54919 1 148 7.2E-62 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_21055 9ba0581a495e9fad7a55ef6e43e3bc94 491 PIRSF PIRSF026631 1 491 7.5E-149 T 13-10-2018 IPR014529 Uncharacterised conserved protein UCP026631 RA13_21055 9ba0581a495e9fad7a55ef6e43e3bc94 491 Pfam PF03703 Bacterial PH domain 67 146 2.2E-19 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RA13_21055 9ba0581a495e9fad7a55ef6e43e3bc94 491 Pfam PF03703 Bacterial PH domain 407 484 3.9E-7 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RA13_21055 9ba0581a495e9fad7a55ef6e43e3bc94 491 Pfam PF03703 Bacterial PH domain 257 340 3.2E-13 T 13-10-2018 IPR005182 Domain of unknown function DUF304 RA13_14190 21f091d69c0fcfac4443b2ee5355f47e 582 Gene3D G3DSA:3.40.50.300 3 247 8.7E-15 T 13-10-2018 RA13_12765 fa16d2f3ad016e4d3dd6c0cd71eca9a5 234 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 8 213 4.9E-69 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RA13_20525 666936e9529f29146ea131a15c330fbf 385 Gene3D G3DSA:1.20.1250.20 197 381 8.8E-17 T 13-10-2018 RA13_20525 666936e9529f29146ea131a15c330fbf 385 Gene3D G3DSA:1.20.1250.20 3 191 7.7E-30 T 13-10-2018 RA13_20525 666936e9529f29146ea131a15c330fbf 385 SUPERFAMILY SSF103473 5 378 5.89E-59 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_20525 666936e9529f29146ea131a15c330fbf 385 Pfam PF07690 Major Facilitator Superfamily 10 319 1.0E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_18395 67346287f5a310384418a7554393e0c3 406 Pfam PF00999 Sodium/hydrogen exchanger family 12 378 6.1E-61 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RA13_18395 67346287f5a310384418a7554393e0c3 406 Gene3D G3DSA:1.20.1530.20 2 389 3.5E-66 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RA13_20880 04cd96d336c8848f69a89a3788c624d1 181 SMART SM00530 9 64 1.5E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_20880 04cd96d336c8848f69a89a3788c624d1 181 SUPERFAMILY SSF47413 3 71 1.15E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_20880 04cd96d336c8848f69a89a3788c624d1 181 Pfam PF01381 Helix-turn-helix 10 61 3.7E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_20880 04cd96d336c8848f69a89a3788c624d1 181 Gene3D G3DSA:2.60.120.10 69 176 2.3E-17 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_20880 04cd96d336c8848f69a89a3788c624d1 181 SUPERFAMILY SSF51182 57 181 6.69E-24 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_20880 04cd96d336c8848f69a89a3788c624d1 181 Pfam PF07883 Cupin domain 106 174 8.6E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel RA13_20880 04cd96d336c8848f69a89a3788c624d1 181 Gene3D G3DSA:1.10.260.40 3 68 9.2E-17 T 13-10-2018 RA13_16175 b8245d3b98a3deddd47deb0f2526b533 431 TIGRFAM TIGR00900 2A0121: H+ Antiporter protein 9 377 7.8E-119 T 13-10-2018 IPR004751 Drug antiporter protein GO:0015307|GO:0015893 RA13_16175 b8245d3b98a3deddd47deb0f2526b533 431 Gene3D G3DSA:1.20.1250.20 2 404 4.5E-37 T 13-10-2018 RA13_16175 b8245d3b98a3deddd47deb0f2526b533 431 SUPERFAMILY SSF103473 5 406 2.35E-39 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_16175 b8245d3b98a3deddd47deb0f2526b533 431 Pfam PF07690 Major Facilitator Superfamily 12 356 5.1E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_10190 e5d15564ff995d52dfd06f97a1621c85 296 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RA13_10190 e5d15564ff995d52dfd06f97a1621c85 296 Gene3D G3DSA:1.10.600.10 2 296 8.6E-106 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_10190 e5d15564ff995d52dfd06f97a1621c85 296 SUPERFAMILY SSF48576 4 283 1.71E-84 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_10190 e5d15564ff995d52dfd06f97a1621c85 296 Pfam PF00348 Polyprenyl synthetase 32 267 1.6E-59 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RA13_10190 e5d15564ff995d52dfd06f97a1621c85 296 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 82 98 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RA13_00130 14e1f5f38c5e90f1cc4bdd61c4397ba8 145 Pfam PF01475 Ferric uptake regulator family 15 131 6.8E-34 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RA13_00130 14e1f5f38c5e90f1cc4bdd61c4397ba8 145 Gene3D G3DSA:1.10.10.10 2 85 1.8E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00130 14e1f5f38c5e90f1cc4bdd61c4397ba8 145 SUPERFAMILY SSF46785 7 136 5.45E-39 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_00130 14e1f5f38c5e90f1cc4bdd61c4397ba8 145 Gene3D G3DSA:3.30.1490.190 87 143 1.2E-22 T 13-10-2018 RA13_08745 d6d814879a5eb3411c5d68db0b19735d 264 Gene3D G3DSA:2.70.70.10 134 262 1.8E-12 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_08745 d6d814879a5eb3411c5d68db0b19735d 264 Pfam PF01551 Peptidase family M23 167 257 1.6E-11 T 13-10-2018 IPR016047 Peptidase M23 RA13_08745 d6d814879a5eb3411c5d68db0b19735d 264 SUPERFAMILY SSF51261 152 234 3.92E-8 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_03945 e3f0d8bacc0d74a92c96319ec27bec3d 186 Pfam PF13411 MerR HTH family regulatory protein 3 62 7.4E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_03945 e3f0d8bacc0d74a92c96319ec27bec3d 186 Gene3D G3DSA:1.10.1660.10 1 66 9.1E-24 T 13-10-2018 RA13_03945 e3f0d8bacc0d74a92c96319ec27bec3d 186 Hamap MF_01170 Chromosome-anchoring protein RacA [racA]. 1 184 21.134 T 13-10-2018 IPR023522 Chromosome-anchoring protein RacA RA13_03945 e3f0d8bacc0d74a92c96319ec27bec3d 186 SUPERFAMILY SSF46955 1 120 1.28E-11 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_18180 9d2c6b8676bc724a92774804796482da 214 SUPERFAMILY SSF51735 1 205 3.18E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18180 9d2c6b8676bc724a92774804796482da 214 Pfam PF13460 NAD(P)H-binding 7 190 4.7E-50 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_18180 9d2c6b8676bc724a92774804796482da 214 Gene3D G3DSA:3.40.50.720 2 214 4.2E-56 T 13-10-2018 RA13_20550 ac5d4c4ad6cdf0cc0be0a529bf4af3e6 507 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 235 500 5.4E-66 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RA13_20550 ac5d4c4ad6cdf0cc0be0a529bf4af3e6 507 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 209 4.7E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_20550 ac5d4c4ad6cdf0cc0be0a529bf4af3e6 507 SUPERFAMILY SSF161098 13 200 6.11E-43 T 13-10-2018 IPR035906 MetI-like superfamily RA13_20550 ac5d4c4ad6cdf0cc0be0a529bf4af3e6 507 Gene3D G3DSA:1.10.3720.10 12 208 2.1E-36 T 13-10-2018 IPR035906 MetI-like superfamily RA13_20550 ac5d4c4ad6cdf0cc0be0a529bf4af3e6 507 Gene3D G3DSA:3.40.190.10 246 504 8.8E-97 T 13-10-2018 RA13_20550 ac5d4c4ad6cdf0cc0be0a529bf4af3e6 507 Gene3D G3DSA:3.40.190.120 339 442 8.8E-97 T 13-10-2018 RA13_20550 ac5d4c4ad6cdf0cc0be0a529bf4af3e6 507 SUPERFAMILY SSF53850 235 503 1.43E-71 T 13-10-2018 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 ProSitePatterns PS00501 Signal peptidases I serine active site. 32 39 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 8 164 7.6E-45 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 Pfam PF00717 Peptidase S24-like 29 97 4.0E-18 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 ProSitePatterns PS00761 Signal peptidases I signature 3. 136 149 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 Gene3D G3DSA:2.10.109.10 53 165 1.7E-37 T 13-10-2018 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 SUPERFAMILY SSF51306 24 164 6.02E-44 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 23 39 9.4E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 131 150 9.4E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 73 85 9.4E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_18040 d137e02422d7b7c29eebe9de3aa6cc50 166 ProSitePatterns PS00760 Signal peptidases I lysine active site. 75 87 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RA13_08605 b8f951d5430c2dddee1889c0ab0a5e10 199 Pfam PF00694 Aconitase C-terminal domain 1 122 5.2E-35 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RA13_08605 b8f951d5430c2dddee1889c0ab0a5e10 199 Gene3D G3DSA:3.20.19.10 1 174 9.3E-73 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RA13_08605 b8f951d5430c2dddee1889c0ab0a5e10 199 SUPERFAMILY SSF52016 1 196 6.87E-59 T 13-10-2018 RA13_08605 b8f951d5430c2dddee1889c0ab0a5e10 199 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 186 1.1E-97 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RA13_08605 b8f951d5430c2dddee1889c0ab0a5e10 199 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 197 42.151 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RA13_05085 cc366e67fb43dd0380ba47b82605a234 174 SUPERFAMILY SSF55729 6 167 1.56E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_05085 cc366e67fb43dd0380ba47b82605a234 174 Gene3D G3DSA:3.40.630.30 6 172 1.8E-36 T 13-10-2018 RA13_05085 cc366e67fb43dd0380ba47b82605a234 174 Pfam PF00583 Acetyltransferase (GNAT) family 43 144 9.4E-13 T 13-10-2018 IPR000182 GNAT domain RA13_02335 6812936a36b2910ce016542a7b6e2800 183 SUPERFAMILY SSF53041 14 134 2.09E-14 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RA13_02335 6812936a36b2910ce016542a7b6e2800 183 SMART SM00857 15 152 5.1E-10 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_02335 6812936a36b2910ce016542a7b6e2800 183 Gene3D G3DSA:3.40.50.1390 10 174 7.3E-18 T 13-10-2018 RA13_02335 6812936a36b2910ce016542a7b6e2800 183 Pfam PF00239 Resolvase, N terminal domain 15 142 3.7E-12 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RA13_16465 cf92d9bc4df2da480ca31dfc40d843b8 298 Hamap MF_00188 Protease HtpX [htpX]. 2 298 24.135 T 13-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RA13_16465 cf92d9bc4df2da480ca31dfc40d843b8 298 Gene3D G3DSA:3.30.2010.10 81 173 8.7E-31 T 13-10-2018 RA13_16465 cf92d9bc4df2da480ca31dfc40d843b8 298 Pfam PF01435 Peptidase family M48 88 297 2.5E-38 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 Gene3D G3DSA:1.20.1370.20 443 536 4.8E-33 T 13-10-2018 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 SUPERFAMILY SSF56634 13 537 7.33E-227 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 Gene3D G3DSA:2.40.180.10 1 442 1.7E-211 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 SUPERFAMILY SSF52317 542 687 1.75E-17 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 Pfam PF06628 Catalase-related immune-responsive 447 511 1.9E-22 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 PIRSF PIRSF038927 1 689 0.0 T 13-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 ProSitePatterns PS00438 Catalase proximal active site signature. 68 84 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 362 370 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 Pfam PF00199 Catalase 32 417 3.4E-180 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 Gene3D G3DSA:3.40.50.880 537 689 6.6E-40 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 SMART SM01060 32 420 2.4E-273 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 Pfam PF01965 DJ-1/PfpI family 544 648 2.6E-8 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 PRINTS PR00067 Catalase signature 148 166 1.9E-70 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 PRINTS PR00067 Catalase signature 108 126 1.9E-70 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 PRINTS PR00067 Catalase signature 317 344 1.9E-70 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 PRINTS PR00067 Catalase signature 129 146 1.9E-70 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 PRINTS PR00067 Catalase signature 45 68 1.9E-70 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_02990 5e8c0deeeac0e3f19b638aac2766bb7c 689 PRINTS PR00067 Catalase signature 349 375 1.9E-70 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_18560 2df6ff2ffe1e9454a4e1bd56fe46dcf9 331 Pfam PF00248 Aldo/keto reductase family 15 309 1.2E-77 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain RA13_18560 2df6ff2ffe1e9454a4e1bd56fe46dcf9 331 SUPERFAMILY SSF51430 1 316 1.57E-100 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_18560 2df6ff2ffe1e9454a4e1bd56fe46dcf9 331 PRINTS PR00069 Aldo-keto reductase signature 140 157 4.1E-14 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_18560 2df6ff2ffe1e9454a4e1bd56fe46dcf9 331 PRINTS PR00069 Aldo-keto reductase signature 43 67 4.1E-14 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_18560 2df6ff2ffe1e9454a4e1bd56fe46dcf9 331 PRINTS PR00069 Aldo-keto reductase signature 109 127 4.1E-14 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RA13_18560 2df6ff2ffe1e9454a4e1bd56fe46dcf9 331 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 140 157 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RA13_18560 2df6ff2ffe1e9454a4e1bd56fe46dcf9 331 Gene3D G3DSA:3.20.20.100 2 331 6.3E-137 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RA13_09460 e307e5f5d83df5b13481adb625b7dbd0 172 TIGRFAM TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA 4 169 4.0E-68 T 13-10-2018 IPR010021 HAD-superfamily phosphatase, YqeG-like RA13_09460 e307e5f5d83df5b13481adb625b7dbd0 172 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 61 129 3.1E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_09460 e307e5f5d83df5b13481adb625b7dbd0 172 Pfam PF13419 Haloacid dehalogenase-like hydrolase 24 137 9.8E-11 T 13-10-2018 RA13_09460 e307e5f5d83df5b13481adb625b7dbd0 172 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 29 139 8.5E-25 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 RA13_09460 e307e5f5d83df5b13481adb625b7dbd0 172 Gene3D G3DSA:3.40.50.1000 18 160 6.1E-23 T 13-10-2018 IPR023214 HAD superfamily RA13_09460 e307e5f5d83df5b13481adb625b7dbd0 172 SUPERFAMILY SSF56784 16 151 6.17E-25 T 13-10-2018 IPR036412 HAD-like superfamily RA13_15620 8f5e65962f89b3318743a78f8487e0fd 143 Pfam PF02381 MraZ protein, putative antitoxin-like 72 141 5.0E-27 T 13-10-2018 IPR020603 MraZ domain RA13_15620 8f5e65962f89b3318743a78f8487e0fd 143 Pfam PF02381 MraZ protein, putative antitoxin-like 1 70 3.6E-24 T 13-10-2018 IPR020603 MraZ domain RA13_15620 8f5e65962f89b3318743a78f8487e0fd 143 Gene3D G3DSA:2.40.330.20 1 141 4.1E-54 T 13-10-2018 IPR038619 MraZ superfamily RA13_15620 8f5e65962f89b3318743a78f8487e0fd 143 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 143 2.7E-66 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RA13_15620 8f5e65962f89b3318743a78f8487e0fd 143 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 143 59.735 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RA13_15620 8f5e65962f89b3318743a78f8487e0fd 143 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 138 4.0E-77 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 RA13_15620 8f5e65962f89b3318743a78f8487e0fd 143 SUPERFAMILY SSF89447 1 136 1.36E-52 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily RA13_18600 d50f6d5819aecb71e6fc5f2b785f5b30 142 Gene3D G3DSA:3.40.630.30 2 142 2.5E-24 T 13-10-2018 RA13_18600 d50f6d5819aecb71e6fc5f2b785f5b30 142 Pfam PF00583 Acetyltransferase (GNAT) family 28 131 1.2E-12 T 13-10-2018 IPR000182 GNAT domain RA13_18600 d50f6d5819aecb71e6fc5f2b785f5b30 142 SUPERFAMILY SSF55729 6 138 1.53E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_03440 61908bc793ae7b741e8ce521a13e7bda 321 TIGRFAM TIGR01432 QOXA: cytochrome aa3 quinol oxidase, subunit II 15 242 1.4E-133 T 13-10-2018 IPR006332 Quinol oxidase subunit II GO:0009486|GO:0016021|GO:0016682|GO:0055114 RA13_03440 61908bc793ae7b741e8ce521a13e7bda 321 PIRSF PIRSF000292 4 314 8.8E-112 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 RA13_03440 61908bc793ae7b741e8ce521a13e7bda 321 Gene3D G3DSA:1.10.287.90 29 116 3.0E-30 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03440 61908bc793ae7b741e8ce521a13e7bda 321 SUPERFAMILY SSF49503 127 279 6.39E-41 T 13-10-2018 IPR008972 Cupredoxin RA13_03440 61908bc793ae7b741e8ce521a13e7bda 321 SUPERFAMILY SSF81464 20 120 8.34E-24 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03440 61908bc793ae7b741e8ce521a13e7bda 321 Gene3D G3DSA:2.60.40.420 117 314 9.7E-41 T 13-10-2018 IPR008972 Cupredoxin RA13_03440 61908bc793ae7b741e8ce521a13e7bda 321 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 43 112 1.4E-10 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_11960 6fc539da4ed164bf5d30bceee7151ba6 66 Pfam PF17356 Phage-like element PBSX protein XtrA 10 65 1.1E-20 T 13-10-2018 IPR035530 Phage-like element PBSX protein XtrA RA13_06795 ff89936d8c7df0b3d3986cbbaccdb26a 130 Gene3D G3DSA:2.40.50.140 2 88 7.8E-34 T 13-10-2018 RA13_06795 ff89936d8c7df0b3d3986cbbaccdb26a 130 PRINTS PR00681 Ribosomal protein S1 signature 60 78 1.7E-11 T 13-10-2018 RA13_06795 ff89936d8c7df0b3d3986cbbaccdb26a 130 PRINTS PR00681 Ribosomal protein S1 signature 21 40 1.7E-11 T 13-10-2018 RA13_06795 ff89936d8c7df0b3d3986cbbaccdb26a 130 Pfam PF00575 S1 RNA binding domain 4 77 2.4E-21 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_06795 ff89936d8c7df0b3d3986cbbaccdb26a 130 SUPERFAMILY SSF50249 5 87 1.29E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_06795 ff89936d8c7df0b3d3986cbbaccdb26a 130 SMART SM00316 6 77 6.8E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_12425 bc3880c011fa833ae80bdbf77398c048 210 SUPERFAMILY SSF52317 4 178 4.09E-32 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_12425 bc3880c011fa833ae80bdbf77398c048 210 Gene3D G3DSA:3.40.50.880 1 210 9.7E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_12425 bc3880c011fa833ae80bdbf77398c048 210 Pfam PF01965 DJ-1/PfpI family 4 176 2.9E-36 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RA13_01855 0d82b8a193bdc26511ba2588423067a0 253 PRINTS PR00091 Nitrogenase component II signature 31 46 8.7E-5 T 13-10-2018 RA13_01855 0d82b8a193bdc26511ba2588423067a0 253 PRINTS PR00091 Nitrogenase component II signature 9 22 8.7E-5 T 13-10-2018 RA13_01855 0d82b8a193bdc26511ba2588423067a0 253 Gene3D G3DSA:3.40.50.300 1 252 1.6E-85 T 13-10-2018 RA13_01855 0d82b8a193bdc26511ba2588423067a0 253 Pfam PF13614 AAA domain 2 178 2.4E-73 T 13-10-2018 IPR025669 AAA domain RA13_01855 0d82b8a193bdc26511ba2588423067a0 253 PIRSF PIRSF009320 2 58 3.2E-15 T 13-10-2018 RA13_01855 0d82b8a193bdc26511ba2588423067a0 253 PIRSF PIRSF009320 90 251 5.0E-8 T 13-10-2018 RA13_01855 0d82b8a193bdc26511ba2588423067a0 253 SUPERFAMILY SSF52540 2 251 8.54E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_16690 9d04688e1261134fdc4ccf4213a42839 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 5 138 4.7E-49 T 13-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 RA13_16690 9d04688e1261134fdc4ccf4213a42839 141 Pfam PF02566 OsmC-like protein 44 137 2.9E-17 T 13-10-2018 IPR003718 OsmC/Ohr family RA13_16690 9d04688e1261134fdc4ccf4213a42839 141 Gene3D G3DSA:2.20.25.10 3 45 1.7E-13 T 13-10-2018 RA13_16690 9d04688e1261134fdc4ccf4213a42839 141 Gene3D G3DSA:3.30.300.20 47 139 4.6E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_16690 9d04688e1261134fdc4ccf4213a42839 141 SUPERFAMILY SSF82784 5 138 2.22E-33 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 SUPERFAMILY SSF50331 237 364 2.38E-27 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 Gene3D G3DSA:2.40.50.140 284 349 4.5E-35 T 13-10-2018 RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 Gene3D G3DSA:2.40.50.100 240 361 4.5E-35 T 13-10-2018 RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 Pfam PF00005 ABC transporter 21 162 6.6E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 SUPERFAMILY SSF52540 4 243 1.1E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 Pfam PF03459 TOBE domain 303 355 6.4E-7 T 13-10-2018 IPR005116 Transport-associated OB, type 1 RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 Gene3D G3DSA:3.40.50.300 1 239 7.1E-76 T 13-10-2018 RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 SMART SM00382 29 212 3.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03095 5f96cbb89ebc5135ae951d5f93f0317d 366 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_02085 3153dd349a27af6c3a70266aba138b34 149 SUPERFAMILY SSF55653 56 146 8.89E-29 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RA13_02085 3153dd349a27af6c3a70266aba138b34 149 Gene3D G3DSA:3.40.5.10 1 52 1.8E-23 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_02085 3153dd349a27af6c3a70266aba138b34 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_02085 3153dd349a27af6c3a70266aba138b34 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.298 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_02085 3153dd349a27af6c3a70266aba138b34 149 Gene3D G3DSA:3.10.430.100 60 148 2.7E-32 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RA13_02085 3153dd349a27af6c3a70266aba138b34 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 3.1E-53 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_02085 3153dd349a27af6c3a70266aba138b34 149 SUPERFAMILY SSF55658 1 56 6.1E-17 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RA13_02085 3153dd349a27af6c3a70266aba138b34 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 146 2.8E-30 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal RA13_02085 3153dd349a27af6c3a70266aba138b34 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 4.4E-22 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_02570 c338c167a6a72a19be3c4415a26168e5 271 SUPERFAMILY SSF51182 4 257 3.04E-72 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_02570 c338c167a6a72a19be3c4415a26168e5 271 Hamap MF_01673 5-deoxy-glucuronate isomerase [iolB]. 1 271 62.711 T 13-10-2018 IPR023770 5-deoxy-glucuronate isomerase, Bacilli GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 RA13_02570 c338c167a6a72a19be3c4415a26168e5 271 Pfam PF04962 KduI/IolB family 13 268 1.1E-106 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 RA13_02570 c338c167a6a72a19be3c4415a26168e5 271 Gene3D G3DSA:2.60.120.10 18 126 8.1E-36 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_02570 c338c167a6a72a19be3c4415a26168e5 271 Gene3D G3DSA:2.60.120.10 127 271 1.0E-60 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_02570 c338c167a6a72a19be3c4415a26168e5 271 PIRSF PIRSF036628 1 271 1.1E-114 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 RA13_02570 c338c167a6a72a19be3c4415a26168e5 271 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 21 268 8.9E-110 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 RA13_04305 9be39d231dd2421fbd9354ae003f099d 274 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 194 270 1.5E-19 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain RA13_04305 9be39d231dd2421fbd9354ae003f099d 274 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 157 256 1.0E-21 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RA13_04305 9be39d231dd2421fbd9354ae003f099d 274 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 147 6.2E-22 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G RA13_04305 9be39d231dd2421fbd9354ae003f099d 274 Pfam PF00460 Flagella basal body rod protein 5 35 8.5E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RA13_04305 9be39d231dd2421fbd9354ae003f099d 274 SUPERFAMILY SSF117143 109 235 1.31E-15 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like RA13_04305 9be39d231dd2421fbd9354ae003f099d 274 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 285 2.6E-119 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 284 2.7E-105 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 PIRSF PIRSF001359 1 285 1.7E-128 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 74 87 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 134 145 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 SUPERFAMILY SSF51569 1 285 1.29E-106 T 13-10-2018 RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 Gene3D G3DSA:3.20.20.70 1 285 1.5E-115 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_03900 07387e33fc99586c4f02261fcb42ba77 285 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 3 285 7.8E-135 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 RA13_04450 d77273c4e1dd5b59bec645751566f172 178 Pfam PF02417 Chromate transporter 6 171 4.8E-36 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 RA13_18475 ec8eb936af879c21d8e5be5eb3b7f65b 166 PRINTS PR01438 Universal stress protein signature 4 22 2.6E-16 T 13-10-2018 IPR006015 Universal stress protein A RA13_18475 ec8eb936af879c21d8e5be5eb3b7f65b 166 PRINTS PR01438 Universal stress protein signature 126 138 2.6E-16 T 13-10-2018 IPR006015 Universal stress protein A RA13_18475 ec8eb936af879c21d8e5be5eb3b7f65b 166 PRINTS PR01438 Universal stress protein signature 144 166 2.6E-16 T 13-10-2018 IPR006015 Universal stress protein A RA13_18475 ec8eb936af879c21d8e5be5eb3b7f65b 166 SUPERFAMILY SSF52402 5 166 3.1E-31 T 13-10-2018 RA13_18475 ec8eb936af879c21d8e5be5eb3b7f65b 166 Gene3D G3DSA:3.40.50.620 3 166 2.5E-35 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_18475 ec8eb936af879c21d8e5be5eb3b7f65b 166 Pfam PF00582 Universal stress protein family 4 166 7.3E-39 T 13-10-2018 IPR006016 UspA RA13_21380 3e6c3fa958809e7d1ca76d302b3d44d9 152 Pfam PF00293 NUDIX domain 17 129 3.8E-13 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RA13_21380 3e6c3fa958809e7d1ca76d302b3d44d9 152 SUPERFAMILY SSF55811 7 140 2.84E-23 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RA13_21380 3e6c3fa958809e7d1ca76d302b3d44d9 152 ProSitePatterns PS00893 Nudix box signature. 46 67 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RA13_21380 3e6c3fa958809e7d1ca76d302b3d44d9 152 Gene3D G3DSA:3.90.79.10 1 144 7.3E-35 T 13-10-2018 RA13_16565 486b67ec3bfb5d90b8c130791e51ae47 60 Pfam PF13076 Fur-regulated basic protein A 13 43 7.3E-5 T 13-10-2018 IPR025072 Fur-regulated basic protein A RA13_09150 19d78d3d1be8ba27bab7f603e1c7e843 232 Pfam PF07423 Protein of unknown function (DUF1510) 7 231 6.6E-74 T 13-10-2018 IPR009988 Protein of unknown function DUF1510 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 Pfam PF01175 Urocanase Rossmann-like domain 137 345 1.4E-89 T 13-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 ProSitePatterns PS01233 Urocanase signature. 438 453 - T 13-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 SUPERFAMILY SSF111326 6 551 4.32E-257 T 13-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 Pfam PF17392 Urocanase C-terminal domain 348 542 6.6E-96 T 13-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 Gene3D G3DSA:3.40.50.10730 138 345 1.5E-256 T 13-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 PIRSF PIRSF001423 1 552 2.9E-296 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 Gene3D G3DSA:3.40.1770.10 16 538 1.5E-256 T 13-10-2018 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 Hamap MF_00577 Urocanate hydratase [hutU]. 2 552 51.342 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 Pfam PF17391 Urocanase N-terminal domain 8 134 1.0E-59 T 13-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02730 2e55ca4cba887aeb84214d0afbf98f45 552 TIGRFAM TIGR01228 hutU: urocanate hydratase 6 550 0.0 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_07495 9aba58aa380080501f50653f51bf9ef6 130 SMART SM00345 16 75 1.3E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_07495 9aba58aa380080501f50653f51bf9ef6 130 Gene3D G3DSA:1.10.10.10 8 127 1.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07495 9aba58aa380080501f50653f51bf9ef6 130 SUPERFAMILY SSF46785 5 83 1.59E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_07495 9aba58aa380080501f50653f51bf9ef6 130 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 1.4E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_18850 88ae290fec65795e01763d3f5c705640 536 SUPERFAMILY SSF103473 15 518 4.84E-76 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_18850 88ae290fec65795e01763d3f5c705640 536 Gene3D G3DSA:1.20.1720.10 17 252 1.7E-43 T 13-10-2018 RA13_18850 88ae290fec65795e01763d3f5c705640 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 2.2E-11 T 13-10-2018 RA13_18850 88ae290fec65795e01763d3f5c705640 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 2.2E-11 T 13-10-2018 RA13_18850 88ae290fec65795e01763d3f5c705640 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 2.2E-11 T 13-10-2018 RA13_18850 88ae290fec65795e01763d3f5c705640 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 305 329 2.2E-11 T 13-10-2018 RA13_18850 88ae290fec65795e01763d3f5c705640 536 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 506 6.8E-194 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RA13_18850 88ae290fec65795e01763d3f5c705640 536 Pfam PF07690 Major Facilitator Superfamily 22 412 4.4E-57 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_21685 e20b91682ebda4f18ccff876d1e8605d 244 Gene3D G3DSA:3.40.50.1820 1 237 1.5E-68 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21685 e20b91682ebda4f18ccff876d1e8605d 244 SMART SM00824 Thioesterase 17 234 0.0022 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RA13_21685 e20b91682ebda4f18ccff876d1e8605d 244 SUPERFAMILY SSF53474 10 234 1.24E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21685 e20b91682ebda4f18ccff876d1e8605d 244 Pfam PF00975 Thioesterase domain 15 232 2.5E-54 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 SMART SM00490 259 340 7.4E-30 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 SMART SM00487 23 223 5.2E-55 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 Pfam PF00270 DEAD/DEAH box helicase 28 195 1.9E-42 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 Gene3D G3DSA:3.40.50.300 216 395 1.7E-42 T 13-10-2018 RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 Gene3D G3DSA:3.40.50.300 2 215 1.9E-65 T 13-10-2018 RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 SUPERFAMILY SSF52540 73 361 1.53E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 Hamap MF_01494 DEAD-box ATP-dependent RNA helicase CshB [cshB]. 4 437 50.275 T 13-10-2018 IPR030881 DEAD-box ATP-dependent RNA helicase CshB GO:0004386|GO:0009409 RA13_09755 7955dd9d0c6e915e438446352c914d1e 438 Pfam PF00271 Helicase conserved C-terminal domain 232 340 9.2E-27 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_15695 7c7253ce7ce13c28ce31f85327766cc8 149 SUPERFAMILY SSF158622 4 126 3.66E-34 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily RA13_15695 7c7253ce7ce13c28ce31f85327766cc8 149 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 12 115 1.2E-20 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA RA13_15695 7c7253ce7ce13c28ce31f85327766cc8 149 Gene3D G3DSA:1.20.1500.10 3 126 3.8E-29 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily RA13_14520 29dba10d4d543988b05adc81444ea107 180 SUPERFAMILY SSF46689 3 72 1.28E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_14520 29dba10d4d543988b05adc81444ea107 180 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 3.6E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_14520 29dba10d4d543988b05adc81444ea107 180 Gene3D G3DSA:1.10.357.10 1 179 6.6E-43 T 13-10-2018 RA13_14520 29dba10d4d543988b05adc81444ea107 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 4.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_14520 29dba10d4d543988b05adc81444ea107 180 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 4.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_14520 29dba10d4d543988b05adc81444ea107 180 SUPERFAMILY SSF48498 102 176 3.82E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_09325 a86c115954fef2acefbe38a042618bdc 91 SUPERFAMILY SSF52038 1 89 1.57E-29 T 13-10-2018 IPR035905 Barstar-like superfamily RA13_09325 a86c115954fef2acefbe38a042618bdc 91 Pfam PF01337 Barstar (barnase inhibitor) 6 84 8.8E-25 T 13-10-2018 IPR000468 Barstar (barnase inhibitor) RA13_09325 a86c115954fef2acefbe38a042618bdc 91 Gene3D G3DSA:3.30.370.10 1 91 3.8E-34 T 13-10-2018 IPR035905 Barstar-like superfamily RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 Pfam PF00294 pfkB family carbohydrate kinase 1 284 4.6E-75 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 Gene3D G3DSA:3.40.1190.20 1 293 3.0E-94 T 13-10-2018 IPR029056 Ribokinase-like RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 SUPERFAMILY SSF53613 1 292 5.14E-79 T 13-10-2018 IPR029056 Ribokinase-like RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 236 249 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 PRINTS PR00990 Ribokinase signature 6 27 5.0E-36 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 PRINTS PR00990 Ribokinase signature 207 218 5.0E-36 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 PRINTS PR00990 Ribokinase signature 104 117 5.0E-36 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 PRINTS PR00990 Ribokinase signature 172 187 5.0E-36 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 PRINTS PR00990 Ribokinase signature 33 52 5.0E-36 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 4 290 2.0E-107 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 RA13_04560 9bb2c1bb620952cd9bef2f854c587a52 293 Hamap MF_01987 Ribokinase [rbsK]. 2 291 24.759 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 RA13_06065 7eb4232efcd895c04e3b4b358775a895 114 Gene3D G3DSA:3.30.1050.10 9 103 7.0E-8 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RA13_06065 7eb4232efcd895c04e3b4b358775a895 114 SUPERFAMILY SSF55718 27 111 2.35E-9 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RA13_06065 7eb4232efcd895c04e3b4b358775a895 114 Pfam PF02036 SCP-2 sterol transfer family 21 101 5.1E-7 T 13-10-2018 IPR003033 SCP2 sterol-binding domain RA13_04905 dc99bc8c44988e0891d8649917e9e048 228 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_04905 dc99bc8c44988e0891d8649917e9e048 228 Gene3D G3DSA:3.40.50.300 1 226 2.5E-67 T 13-10-2018 RA13_04905 dc99bc8c44988e0891d8649917e9e048 228 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 3.9E-90 T 13-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 RA13_04905 dc99bc8c44988e0891d8649917e9e048 228 SMART SM00382 27 221 1.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04905 dc99bc8c44988e0891d8649917e9e048 228 SUPERFAMILY SSF52540 1 223 2.47E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04905 dc99bc8c44988e0891d8649917e9e048 228 Pfam PF00005 ABC transporter 19 165 7.1E-38 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.5E-5 T 13-10-2018 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 181 2.5E-5 T 13-10-2018 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 2.5E-5 T 13-10-2018 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 Gene3D G3DSA:3.50.50.100 1 391 1.3E-115 T 13-10-2018 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 318 1.8E-41 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 SUPERFAMILY SSF51905 2 335 2.04E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_17130 6057f64a37b6f54434e640740a0603b3 392 SUPERFAMILY SSF51905 1 207 1.71E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_17130 6057f64a37b6f54434e640740a0603b3 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.3E-10 T 13-10-2018 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.3E-10 T 13-10-2018 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.3E-10 T 13-10-2018 RA13_17130 6057f64a37b6f54434e640740a0603b3 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 1.3E-10 T 13-10-2018 RA13_05985 d03582b3e464b743724d62480639d92d 273 SUPERFAMILY SSF52540 4 229 2.28E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05985 d03582b3e464b743724d62480639d92d 273 SMART SM00382 28 225 4.5E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05985 d03582b3e464b743724d62480639d92d 273 Gene3D G3DSA:3.40.50.300 4 253 6.9E-66 T 13-10-2018 RA13_05985 d03582b3e464b743724d62480639d92d 273 Pfam PF00005 ABC transporter 20 167 1.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05985 d03582b3e464b743724d62480639d92d 273 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_10240 6c9ae1e197cf3bf44e0c529edd4482cd 207 SUPERFAMILY SSF53187 30 205 1.1E-53 T 13-10-2018 RA13_10240 6c9ae1e197cf3bf44e0c529edd4482cd 207 SMART SM00646 91 202 1.4E-43 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_10240 6c9ae1e197cf3bf44e0c529edd4482cd 207 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 33 202 2.2E-54 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_10240 6c9ae1e197cf3bf44e0c529edd4482cd 207 Gene3D G3DSA:3.40.630.40 29 207 4.7E-62 T 13-10-2018 RA13_18930 d40629149afa52e831b4cd2358cf2b63 378 SUPERFAMILY SSF51679 1 347 1.2E-100 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_18930 d40629149afa52e831b4cd2358cf2b63 378 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 374 78.998 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RA13_18930 d40629149afa52e831b4cd2358cf2b63 378 Pfam PF00296 Luciferase-like monooxygenase 1 323 2.2E-92 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RA13_18930 d40629149afa52e831b4cd2358cf2b63 378 Gene3D G3DSA:3.20.20.30 1 357 1.8E-148 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_18930 d40629149afa52e831b4cd2358cf2b63 378 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 347 1.3E-191 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RA13_12250 7d298677967d011ca4ae137287f3109c 47 Pfam PF13217 Protein of unknown function (DUF4025) 24 43 7.2E-7 T 13-10-2018 IPR025100 Protein of unknown function DUF4025 RA13_06610 172ddf7c20be7aac80c7d08f9894ee50 488 Gene3D G3DSA:3.20.20.70 154 321 8.6E-205 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_06610 172ddf7c20be7aac80c7d08f9894ee50 488 Gene3D G3DSA:3.20.140.10 13 472 8.6E-205 T 13-10-2018 RA13_06610 172ddf7c20be7aac80c7d08f9894ee50 488 SUPERFAMILY SSF54675 9 141 1.3E-47 T 13-10-2018 RA13_06610 172ddf7c20be7aac80c7d08f9894ee50 488 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 12 467 1.0E-178 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 RA13_06610 172ddf7c20be7aac80c7d08f9894ee50 488 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 160 349 8.7E-13 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RA13_06610 172ddf7c20be7aac80c7d08f9894ee50 488 PIRSF PIRSF000484 6 482 5.2E-154 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RA13_06610 172ddf7c20be7aac80c7d08f9894ee50 488 SUPERFAMILY SSF51690 142 480 3.39E-129 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 Gene3D G3DSA:1.10.560.10 7 518 3.1E-236 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 Gene3D G3DSA:3.30.260.10 137 408 3.1E-236 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 524 2.7E-259 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 SUPERFAMILY SSF48592 5 518 1.92E-80 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 Hamap MF_00600 60 kDa chaperonin [groL]. 1 543 42.502 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 PRINTS PR00298 60kDa chaperonin signature 82 109 2.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 PRINTS PR00298 60kDa chaperonin signature 26 52 2.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 PRINTS PR00298 60kDa chaperonin signature 266 289 2.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 PRINTS PR00298 60kDa chaperonin signature 396 417 2.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 PRINTS PR00298 60kDa chaperonin signature 348 373 2.0E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 Gene3D G3DSA:3.50.7.10 171 377 3.1E-236 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 SUPERFAMILY SSF54849 136 204 4.12E-27 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 1.3E-104 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RA13_20390 94786cfe0eec89455ea91ea7f751eac8 544 SUPERFAMILY SSF52029 183 374 2.84E-84 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily RA13_06045 5d5fd419b0af9e955d56d04d8c5d2385 127 SUPERFAMILY SSF51230 3 125 3.14E-45 T 13-10-2018 IPR011053 Single hybrid motif RA13_06045 5d5fd419b0af9e955d56d04d8c5d2385 127 Pfam PF01597 Glycine cleavage H-protein 7 126 8.2E-51 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate RA13_06045 5d5fd419b0af9e955d56d04d8c5d2385 127 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RA13_06045 5d5fd419b0af9e955d56d04d8c5d2385 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 125 39.517 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RA13_06045 5d5fd419b0af9e955d56d04d8c5d2385 127 Gene3D G3DSA:2.40.50.100 2 127 7.0E-53 T 13-10-2018 RA13_06045 5d5fd419b0af9e955d56d04d8c5d2385 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 127 1.8E-60 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 SUPERFAMILY SSF51735 4 176 3.07E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 PIRSF PIRSF000109 1 469 1.8E-245 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 Gene3D G3DSA:1.10.1040.10 180 435 1.6E-112 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 4.7E-88 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 4.7E-88 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 4.7E-88 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 4.7E-88 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 4.7E-88 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 167 195 4.7E-88 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 Gene3D G3DSA:3.40.50.720 1 179 7.9E-61 T 13-10-2018 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 178 467 4.5E-137 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 167 4.4E-55 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 Gene3D G3DSA:1.20.5.320 436 469 2.0E-22 T 13-10-2018 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 SUPERFAMILY SSF48179 176 468 8.84E-133 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 SMART SM01350 178 468 3.0E-231 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_10400 ca89d90fd89e69ccd19355f94c9b6bec 469 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 7.3E-233 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 RA13_13405 680b4644fead54c82ceb9e8ede0d1957 173 Pfam PF00583 Acetyltransferase (GNAT) family 43 146 1.5E-18 T 13-10-2018 IPR000182 GNAT domain RA13_13405 680b4644fead54c82ceb9e8ede0d1957 173 SUPERFAMILY SSF55729 34 150 1.26E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_13405 680b4644fead54c82ceb9e8ede0d1957 173 PRINTS PR01754 Streptothricin acetyltransferase signature 160 173 2.1E-23 T 13-10-2018 IPR008125 Streptothricin acetyltransferase RA13_13405 680b4644fead54c82ceb9e8ede0d1957 173 PRINTS PR01754 Streptothricin acetyltransferase signature 138 154 2.1E-23 T 13-10-2018 IPR008125 Streptothricin acetyltransferase RA13_13405 680b4644fead54c82ceb9e8ede0d1957 173 PRINTS PR01754 Streptothricin acetyltransferase signature 93 108 2.1E-23 T 13-10-2018 IPR008125 Streptothricin acetyltransferase RA13_13405 680b4644fead54c82ceb9e8ede0d1957 173 PRINTS PR01754 Streptothricin acetyltransferase signature 117 132 2.1E-23 T 13-10-2018 IPR008125 Streptothricin acetyltransferase RA13_13405 680b4644fead54c82ceb9e8ede0d1957 173 Gene3D G3DSA:3.40.630.30 1 173 2.8E-33 T 13-10-2018 RA13_11725 48acb20fb6673836b7fc60dde422e8c6 453 Gene3D G3DSA:3.40.640.10 49 324 6.3E-136 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_11725 48acb20fb6673836b7fc60dde422e8c6 453 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_11725 48acb20fb6673836b7fc60dde422e8c6 453 Gene3D G3DSA:3.90.1150.10 15 435 6.3E-136 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_11725 48acb20fb6673836b7fc60dde422e8c6 453 Pfam PF00202 Aminotransferase class-III 16 435 8.4E-100 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_11725 48acb20fb6673836b7fc60dde422e8c6 453 SUPERFAMILY SSF53383 14 438 1.55E-109 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_11725 48acb20fb6673836b7fc60dde422e8c6 453 PIRSF PIRSF000521 8 399 7.7E-35 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_06350 12d73484fe3371b5cac79bcb4c0714c9 166 Pfam PF04608 Phosphatidylglycerophosphatase A 23 159 5.6E-19 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RA13_06350 12d73484fe3371b5cac79bcb4c0714c9 166 SUPERFAMILY SSF101307 11 162 8.76E-54 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 RA13_06350 12d73484fe3371b5cac79bcb4c0714c9 166 PIRSF PIRSF019587 5 166 3.3E-84 T 13-10-2018 IPR026038 Putative phosphatidylglycerophosphatase RA13_06350 12d73484fe3371b5cac79bcb4c0714c9 166 Gene3D G3DSA:1.10.3760.10 1 166 1.1E-74 T 13-10-2018 RA13_19270 ffda262ca5c8b3ade0911bcc7ec5bce8 90 Pfam PF01337 Barstar (barnase inhibitor) 6 81 8.7E-23 T 13-10-2018 IPR000468 Barstar (barnase inhibitor) RA13_19270 ffda262ca5c8b3ade0911bcc7ec5bce8 90 SUPERFAMILY SSF52038 1 87 1.7E-27 T 13-10-2018 IPR035905 Barstar-like superfamily RA13_19270 ffda262ca5c8b3ade0911bcc7ec5bce8 90 Gene3D G3DSA:3.30.370.10 2 90 8.0E-34 T 13-10-2018 IPR035905 Barstar-like superfamily RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Pfam PF01743 Poly A polymerase head domain 22 142 3.2E-40 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Gene3D G3DSA:1.20.58.560 245 338 1.9E-13 T 13-10-2018 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Gene3D G3DSA:3.30.460.10 2 142 9.0E-53 T 13-10-2018 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Gene3D G3DSA:1.10.246.80 339 397 8.1E-19 T 13-10-2018 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 245 390 1.8E-35 T 13-10-2018 IPR032810 CCA-adding enzyme, C-terminal RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 SUPERFAMILY SSF81891 140 394 4.19E-50 T 13-10-2018 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 169 227 6.7E-15 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Gene3D G3DSA:1.10.3090.10 143 244 1.8E-31 T 13-10-2018 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 Hamap MF_01263 CCA-adding enzyme [cca]. 2 395 40.68 T 13-10-2018 IPR023068 CCA-adding enzyme, firmicutes GO:0001680|GO:0004810|GO:0016437 RA13_11205 0ddb15e2d887f1cbcb5e042e04cd980f 397 SUPERFAMILY SSF81301 4 137 2.07E-42 T 13-10-2018 RA13_01550 236cdf54e3805d1ff642f89544567e41 119 Pfam PF06156 Initiation control protein YabA 1 114 4.8E-38 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 RA13_01550 236cdf54e3805d1ff642f89544567e41 119 PIRSF PIRSF021439 1 119 2.1E-41 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 RA13_01550 236cdf54e3805d1ff642f89544567e41 119 Hamap MF_01159 Initiation-control protein YabA. 1 118 25.461 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 RA13_02545 ba685bdad9e5506f3559caebd60045f6 194 Gene3D G3DSA:1.10.3300.10 7 193 1.1E-16 T 13-10-2018 IPR023286 ABATE domain superfamily RA13_02545 ba685bdad9e5506f3559caebd60045f6 194 Pfam PF07336 Putative stress-induced transcription regulator 15 143 2.9E-11 T 13-10-2018 IPR010852 Putative stress-induced transcription regulator RA13_02545 ba685bdad9e5506f3559caebd60045f6 194 SUPERFAMILY SSF160904 7 190 1.31E-33 T 13-10-2018 RA13_02545 ba685bdad9e5506f3559caebd60045f6 194 Pfam PF11706 CGNR zinc finger 152 191 6.5E-15 T 13-10-2018 IPR021005 Zinc finger, CGNR RA13_13865 942e2c62c3ab402123c05b778bdeb9f0 270 Gene3D G3DSA:3.30.1490.70 13 181 1.7E-43 T 13-10-2018 RA13_13865 942e2c62c3ab402123c05b778bdeb9f0 270 Pfam PF01068 ATP dependent DNA ligase domain 10 182 8.8E-28 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RA13_13865 942e2c62c3ab402123c05b778bdeb9f0 270 Gene3D G3DSA:3.30.470.30 28 139 1.7E-43 T 13-10-2018 RA13_13865 942e2c62c3ab402123c05b778bdeb9f0 270 SUPERFAMILY SSF56091 2 182 1.06E-40 T 13-10-2018 RA13_07655 3178f4297c3e931e864bb6c6be0cf82e 60 Pfam PF10957 Sporulation protein Cse60 1 60 2.7E-35 T 13-10-2018 IPR020296 Sporulation protein Cse60 RA13_07655 3178f4297c3e931e864bb6c6be0cf82e 60 ProDom PD052690 CSE60 CYTOSOLIC YTEV LJ928 SPORULATION ORF85 PROPHAGE 1 59 1.0E-27 T 13-10-2018 IPR020296 Sporulation protein Cse60 RA13_09255 73c1b283c5b1a6a6c7884c9e76379854 251 Gene3D G3DSA:2.40.128.20 67 251 1.5E-81 T 13-10-2018 IPR012674 Calycin RA13_09255 73c1b283c5b1a6a6c7884c9e76379854 251 SUPERFAMILY SSF50814 67 251 1.17E-82 T 13-10-2018 IPR012674 Calycin RA13_09255 73c1b283c5b1a6a6c7884c9e76379854 251 Pfam PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment 73 251 3.4E-83 T 13-10-2018 IPR015304 ZinT domain GO:0008270 RA13_07625 cd4e50ade58b55facbe50a179a65ef32 771 SMART SM00342 682 765 7.7E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_07625 cd4e50ade58b55facbe50a179a65ef32 771 SUPERFAMILY SSF46689 718 768 3.72E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_07625 cd4e50ade58b55facbe50a179a65ef32 771 Gene3D G3DSA:1.10.10.60 715 770 1.8E-14 T 13-10-2018 RA13_07625 cd4e50ade58b55facbe50a179a65ef32 771 Pfam PF12833 Helix-turn-helix domain 688 766 1.8E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_07625 cd4e50ade58b55facbe50a179a65ef32 771 Pfam PF02743 Cache domain 43 287 7.5E-13 T 13-10-2018 IPR033479 Double Cache domain 1 RA13_07625 cd4e50ade58b55facbe50a179a65ef32 771 SUPERFAMILY SSF46689 669 715 1.79E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_07625 cd4e50ade58b55facbe50a179a65ef32 771 Gene3D G3DSA:1.10.10.60 663 714 2.0E-16 T 13-10-2018 RA13_18190 818abc57667323bfee788ec0ba07a7b7 244 SMART SM00849 18 211 2.8E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_18190 818abc57667323bfee788ec0ba07a7b7 244 Pfam PF12706 Beta-lactamase superfamily domain 31 211 3.8E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_18190 818abc57667323bfee788ec0ba07a7b7 244 Gene3D G3DSA:3.60.15.10 1 244 7.7E-83 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_18190 818abc57667323bfee788ec0ba07a7b7 244 SUPERFAMILY SSF56281 1 242 3.67E-51 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_17515 60c4471e22952669dd959e75e0f633c3 236 SUPERFAMILY SSF53955 113 235 7.32E-50 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_17515 60c4471e22952669dd959e75e0f633c3 236 Pfam PF01464 Transglycosylase SLT domain 118 226 2.6E-35 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 RA13_17515 60c4471e22952669dd959e75e0f633c3 236 Gene3D G3DSA:1.10.530.10 77 236 3.8E-53 T 13-10-2018 RA13_10500 2f19f16c2ba7d0d7a5a473c57ca2c227 156 Pfam PF00583 Acetyltransferase (GNAT) family 31 124 3.1E-15 T 13-10-2018 IPR000182 GNAT domain RA13_10500 2f19f16c2ba7d0d7a5a473c57ca2c227 156 PIRSF PIRSF037663 1 156 6.6E-76 T 13-10-2018 IPR017255 Acetyltransferase, GNAT, predicted RA13_10500 2f19f16c2ba7d0d7a5a473c57ca2c227 156 SUPERFAMILY SSF55729 1 155 1.01E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_10500 2f19f16c2ba7d0d7a5a473c57ca2c227 156 Gene3D G3DSA:3.40.630.30 1 156 5.9E-46 T 13-10-2018 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 Gene3D G3DSA:3.40.50.300 283 550 3.6E-62 T 13-10-2018 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 Pfam PF12848 ABC transporter 226 299 3.0E-14 T 13-10-2018 IPR032781 ABC-transporter extension domain RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 Pfam PF00005 ABC transporter 341 469 1.6E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 SMART SM00382 343 514 1.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 SMART SM00382 28 232 5.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 Pfam PF16326 ABC transporter C-terminal domain 556 621 2.7E-17 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 SUPERFAMILY SSF52540 313 529 1.18E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 Pfam PF00005 ABC transporter 20 187 3.8E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 Gene3D G3DSA:3.40.50.300 2 281 5.4E-71 T 13-10-2018 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 Gene3D G3DSA:1.10.287.380 551 625 8.5E-12 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RA13_19695 fd02c8039d0d4bc4c9c69ec364bfda84 629 SUPERFAMILY SSF52540 3 248 1.1E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07905 1b6e561ec5df57dad9040a1a805a31ab 197 SUPERFAMILY SSF54909 16 113 8.84E-18 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_07905 1b6e561ec5df57dad9040a1a805a31ab 197 Pfam PF03992 Antibiotic biosynthesis monooxygenase 22 90 2.5E-5 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RA13_07905 1b6e561ec5df57dad9040a1a805a31ab 197 Gene3D G3DSA:3.30.70.100 21 116 1.8E-7 T 13-10-2018 RA13_06120 b65adf1044b6147b54738d03a361dbd6 124 SUPERFAMILY SSF82771 42 121 3.4E-14 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_06120 b65adf1044b6147b54738d03a361dbd6 124 Gene3D G3DSA:3.40.1440.10 34 122 2.1E-14 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RA13_06120 b65adf1044b6147b54738d03a361dbd6 124 SMART SM00465 43 122 1.1E-15 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_06120 b65adf1044b6147b54738d03a361dbd6 124 Pfam PF01541 GIY-YIG catalytic domain 43 117 5.0E-12 T 13-10-2018 IPR000305 GIY-YIG endonuclease RA13_06120 b65adf1044b6147b54738d03a361dbd6 124 PIRSF PIRSF026568 1 124 6.8E-75 T 13-10-2018 IPR014527 Excinuclease GIY-YIG catalytic domain-containing uncharacterised conserved protein RA13_05740 ce9e4055ec78b465b120cb8b7195cb6a 263 Pfam PF13531 Bacterial extracellular solute-binding protein 37 260 5.2E-51 T 13-10-2018 RA13_05740 ce9e4055ec78b465b120cb8b7195cb6a 263 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 42 259 6.3E-68 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 RA13_05740 ce9e4055ec78b465b120cb8b7195cb6a 263 SUPERFAMILY SSF53850 36 261 7.0E-68 T 13-10-2018 RA13_05740 ce9e4055ec78b465b120cb8b7195cb6a 263 Gene3D G3DSA:3.40.190.10 116 223 8.8E-80 T 13-10-2018 RA13_05740 ce9e4055ec78b465b120cb8b7195cb6a 263 Gene3D G3DSA:3.40.190.10 39 260 8.8E-80 T 13-10-2018 RA13_05740 ce9e4055ec78b465b120cb8b7195cb6a 263 PIRSF PIRSF004846 1 263 1.8E-90 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 RA13_07490 90108aefe749b480a9de0e25f287af6f 90 Pfam PF10732 Protein of unknown function (DUF2524) 1 84 2.6E-37 T 13-10-2018 IPR019668 Uncharacterised protein family YtzC RA13_10965 73b9dfec060e57dae4e5a10974dde540 58 Pfam PF17313 Family of unknown function (DUF5359) 1 55 1.3E-23 T 13-10-2018 IPR035281 Protein of unknown function DUF5359 RA13_10965 73b9dfec060e57dae4e5a10974dde540 58 ProDom PD052359 YPFB 1 57 2.0E-19 T 13-10-2018 IPR035281 Protein of unknown function DUF5359 RA13_13675 9952b1b39a326854c30869649a6d6aa8 144 Gene3D G3DSA:2.30.30.290 59 144 2.2E-13 T 13-10-2018 IPR023385 YopX-like, C-terminal RA13_13675 9952b1b39a326854c30869649a6d6aa8 144 SUPERFAMILY SSF159006 7 144 7.32E-23 T 13-10-2018 RA13_13675 9952b1b39a326854c30869649a6d6aa8 144 TIGRFAM TIGR01671 phage_TIGR01671: phage conserved hypothetical protein TIGR01671 9 144 1.8E-12 T 13-10-2018 IPR010024 Conserved hypothetical protein CHP1671 RA13_13675 9952b1b39a326854c30869649a6d6aa8 144 Pfam PF09643 YopX protein 10 144 9.7E-18 T 13-10-2018 IPR019096 YopX protein RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 129 139 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 Gene3D G3DSA:3.30.300.10 7 247 6.3E-183 T 13-10-2018 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 273 281 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 Gene3D G3DSA:3.30.300.10 104 389 6.3E-183 T 13-10-2018 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 PIRSF PIRSF000497 1 398 1.0E-180 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 103 3.9E-44 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 Pfam PF02772 S-adenosylmethionine synthetase, central domain 128 245 8.9E-51 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 SUPERFAMILY SSF55973 125 246 5.89E-54 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 Gene3D G3DSA:3.30.300.10 13 284 6.3E-183 T 13-10-2018 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 395 5.9E-191 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 SUPERFAMILY SSF55973 5 111 9.81E-48 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 247 386 5.1E-70 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 397 60.872 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_07450 d9b2eb50f40ccabe3495d9902a89e913 400 SUPERFAMILY SSF55973 247 395 1.69E-69 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RA13_18480 11fb28ad49cf2fbc5d93842f2d32eec0 453 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 17 451 7.2E-138 T 13-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 RA13_18480 11fb28ad49cf2fbc5d93842f2d32eec0 453 Pfam PF03553 Na+/H+ antiporter family 159 451 7.2E-67 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RA13_09745 cd6afbe5384b6ef296e8716b488e8479 314 Gene3D G3DSA:3.40.50.11270 12 103 2.8E-96 T 13-10-2018 RA13_09745 cd6afbe5384b6ef296e8716b488e8479 314 Gene3D G3DSA:3.40.1010.20 7 284 2.8E-96 T 13-10-2018 RA13_09745 cd6afbe5384b6ef296e8716b488e8479 314 Gene3D G3DSA:3.40.1010.20 104 197 2.8E-96 T 13-10-2018 RA13_09745 cd6afbe5384b6ef296e8716b488e8479 314 Pfam PF02401 LytB protein 5 284 2.6E-81 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RA13_09745 cd6afbe5384b6ef296e8716b488e8479 314 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 288 33.116 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RA13_09745 cd6afbe5384b6ef296e8716b488e8479 314 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3 286 1.9E-98 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RA13_17725 adb75158cff79f376bbef587ab8ba8fd 180 Pfam PF07690 Major Facilitator Superfamily 10 175 3.8E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_17725 adb75158cff79f376bbef587ab8ba8fd 180 SUPERFAMILY SSF103473 6 176 6.41E-24 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_17725 adb75158cff79f376bbef587ab8ba8fd 180 Gene3D G3DSA:1.20.1250.20 2 177 1.8E-22 T 13-10-2018 RA13_19575 4def08ea6dc9d484abfbd33b433d2332 46 Pfam PF11121 Protein of unknown function (DUF2639) 2 39 6.8E-21 T 13-10-2018 IPR022580 Protein of unknown function DUF2639 RA13_19575 4def08ea6dc9d484abfbd33b433d2332 46 ProDom PD049467 YFLJ 1 42 1.0E-14 T 13-10-2018 IPR022580 Protein of unknown function DUF2639 RA13_17555 e04b3a760d397a92c7866b5299d3bf82 131 Hamap MF_01132 Regulatory protein Spx [spxA]. 1 131 39.7 T 13-10-2018 IPR023731 Regulatory protein Spx GO:0045892 RA13_17555 e04b3a760d397a92c7866b5299d3bf82 131 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 114 8.9E-37 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR RA13_17555 e04b3a760d397a92c7866b5299d3bf82 131 SUPERFAMILY SSF52833 1 128 4.99E-40 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_17555 e04b3a760d397a92c7866b5299d3bf82 131 Gene3D G3DSA:3.40.30.10 1 131 1.6E-47 T 13-10-2018 RA13_17555 e04b3a760d397a92c7866b5299d3bf82 131 Pfam PF03960 ArsC family 5 113 1.3E-23 T 13-10-2018 IPR006660 Arsenate reductase-like RA13_05215 4fb533dfeac00725f2be008768a2c63f 150 Gene3D G3DSA:1.20.120.450 6 150 5.5E-21 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_05215 4fb533dfeac00725f2be008768a2c63f 150 Pfam PF12867 DinB superfamily 24 144 1.4E-12 T 13-10-2018 IPR024775 DinB-like domain RA13_05215 4fb533dfeac00725f2be008768a2c63f 150 SUPERFAMILY SSF109854 23 149 3.97E-19 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_18860 1d7d2f381e2c329bb09f594fcb0cc0ef 152 Gene3D G3DSA:1.10.10.10 1 146 4.5E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_18860 1d7d2f381e2c329bb09f594fcb0cc0ef 152 SUPERFAMILY SSF46785 9 144 6.34E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_18860 1d7d2f381e2c329bb09f594fcb0cc0ef 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 2.3E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18860 1d7d2f381e2c329bb09f594fcb0cc0ef 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 2.3E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18860 1d7d2f381e2c329bb09f594fcb0cc0ef 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 2.3E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18860 1d7d2f381e2c329bb09f594fcb0cc0ef 152 Pfam PF01047 MarR family 38 96 2.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18860 1d7d2f381e2c329bb09f594fcb0cc0ef 152 SMART SM00347 31 131 5.5E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20175 2317872368ed714bc067c91f98284942 380 Gene3D G3DSA:3.30.1490.20 117 185 4.7E-27 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_20175 2317872368ed714bc067c91f98284942 380 SUPERFAMILY SSF51246 309 371 4.16E-13 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RA13_20175 2317872368ed714bc067c91f98284942 380 Pfam PF02222 ATP-grasp domain 116 285 1.3E-61 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RA13_20175 2317872368ed714bc067c91f98284942 380 Gene3D G3DSA:3.30.470.20 186 373 8.8E-73 T 13-10-2018 RA13_20175 2317872368ed714bc067c91f98284942 380 SUPERFAMILY SSF56059 107 305 9.9E-64 T 13-10-2018 RA13_20175 2317872368ed714bc067c91f98284942 380 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 11 360 42.433 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RA13_20175 2317872368ed714bc067c91f98284942 380 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 12 365 1.3E-139 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RA13_20175 2317872368ed714bc067c91f98284942 380 SUPERFAMILY SSF52440 7 93 8.2E-27 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RA13_20175 2317872368ed714bc067c91f98284942 380 Gene3D G3DSA:3.40.50.20 2 116 7.6E-45 T 13-10-2018 RA13_01300 fc847d729f8260e7fb01cf559c8f84a6 333 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 4 322 3.0E-143 T 13-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RA13_01300 fc847d729f8260e7fb01cf559c8f84a6 333 PIRSF PIRSF006621 1 330 8.2E-110 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RA13_01300 fc847d729f8260e7fb01cf559c8f84a6 333 Pfam PF01207 Dihydrouridine synthase (Dus) 14 320 1.6E-114 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RA13_01300 fc847d729f8260e7fb01cf559c8f84a6 333 SUPERFAMILY SSF51395 11 318 4.39E-89 T 13-10-2018 RA13_01300 fc847d729f8260e7fb01cf559c8f84a6 333 Gene3D G3DSA:1.10.1200.80 253 331 1.4E-19 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 RA13_01300 fc847d729f8260e7fb01cf559c8f84a6 333 Gene3D G3DSA:3.20.20.70 7 251 6.9E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_01300 fc847d729f8260e7fb01cf559c8f84a6 333 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 96 114 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 SMART SM00283 384 659 1.3E-91 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 Gene3D G3DSA:3.30.450.20 61 271 6.5E-40 T 13-10-2018 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 SUPERFAMILY SSF58104 323 659 5.1E-73 T 13-10-2018 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 Gene3D G3DSA:1.10.8.500 302 354 2.1E-10 T 13-10-2018 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 Pfam PF02743 Cache domain 46 265 2.7E-29 T 13-10-2018 IPR033479 Double Cache domain 1 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 SUPERFAMILY SSF103190 91 193 7.53E-13 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_06880 8f15763a389f3527208902a6c7e0887b 662 SMART SM00304 303 355 1.4E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 Gene3D G3DSA:1.10.287.950 355 659 1.8E-70 T 13-10-2018 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 Pfam PF00672 HAMP domain 304 351 1.1E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 SMART SM00319 33 151 3.0E-35 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 429 612 1.9E-55 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_06880 8f15763a389f3527208902a6c7e0887b 662 Gene3D G3DSA:3.30.450.20 72 183 6.5E-40 T 13-10-2018 RA13_07995 05b8e67c7c59b5b632ecf73764b720e4 227 Pfam PF11167 Protein of unknown function (DUF2953) 128 180 1.6E-17 T 13-10-2018 IPR021338 Protein of unknown function DUF2953 RA13_16725 1a2385e5c3305029a02cc3971f421799 174 Pfam PF12867 DinB superfamily 24 158 5.8E-10 T 13-10-2018 IPR024775 DinB-like domain RA13_16725 1a2385e5c3305029a02cc3971f421799 174 SUPERFAMILY SSF109854 3 163 7.63E-28 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_16725 1a2385e5c3305029a02cc3971f421799 174 Gene3D G3DSA:1.20.120.450 2 166 6.3E-20 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_10410 072ddffd9599e174bbb98a644d3c0f79 308 Hamap MF_01818 Ribonuclease BN [rbn]. 1 305 41.801 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 RA13_10410 072ddffd9599e174bbb98a644d3c0f79 308 Pfam PF12706 Beta-lactamase superfamily domain 35 151 4.2E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_10410 072ddffd9599e174bbb98a644d3c0f79 308 Pfam PF12706 Beta-lactamase superfamily domain 201 270 4.0E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_10410 072ddffd9599e174bbb98a644d3c0f79 308 SMART SM00849 18 269 0.0043 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_10410 072ddffd9599e174bbb98a644d3c0f79 308 SUPERFAMILY SSF56281 2 304 2.49E-86 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_10410 072ddffd9599e174bbb98a644d3c0f79 308 Gene3D G3DSA:3.60.15.10 1 305 5.7E-107 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_10410 072ddffd9599e174bbb98a644d3c0f79 308 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 2 304 6.1E-120 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 RA13_17625 9580242e56eabb219e91e091caa6870c 541 PIRSF PIRSF002741 4 541 4.2E-167 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RA13_17625 9580242e56eabb219e91e091caa6870c 541 SUPERFAMILY SSF53850 40 540 2.13E-151 T 13-10-2018 RA13_17625 9580242e56eabb219e91e091caa6870c 541 Gene3D G3DSA:3.40.190.10 53 523 1.6E-196 T 13-10-2018 RA13_17625 9580242e56eabb219e91e091caa6870c 541 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 87 454 7.6E-100 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RA13_17625 9580242e56eabb219e91e091caa6870c 541 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 92 114 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site RA13_17625 9580242e56eabb219e91e091caa6870c 541 Gene3D G3DSA:3.90.76.10 75 194 1.6E-196 T 13-10-2018 RA13_17625 9580242e56eabb219e91e091caa6870c 541 Gene3D G3DSA:3.10.105.10 287 509 1.6E-196 T 13-10-2018 RA13_16745 04433a3cfeeaeb402399146de29af67c 244 Gene3D G3DSA:3.30.240.20 167 227 1.8E-13 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_16745 04433a3cfeeaeb402399146de29af67c 244 Pfam PF04239 Protein of unknown function (DUF421) 90 202 4.1E-30 T 13-10-2018 IPR007353 Protein of unknown function DUF421 RA13_16745 04433a3cfeeaeb402399146de29af67c 244 Gene3D G3DSA:3.30.240.20 81 152 2.3E-18 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_18740 9cbcd1d569d804e87a5b983f8d360845 140 SUPERFAMILY SSF54631 3 117 7.58E-36 T 13-10-2018 RA13_18740 9cbcd1d569d804e87a5b983f8d360845 140 Pfam PF00571 CBS domain 68 118 9.8E-13 T 13-10-2018 IPR000644 CBS domain RA13_18740 9cbcd1d569d804e87a5b983f8d360845 140 Pfam PF00571 CBS domain 8 54 8.3E-12 T 13-10-2018 IPR000644 CBS domain RA13_18740 9cbcd1d569d804e87a5b983f8d360845 140 SMART SM00116 11 58 2.8E-13 T 13-10-2018 IPR000644 CBS domain RA13_18740 9cbcd1d569d804e87a5b983f8d360845 140 SMART SM00116 75 122 1.8E-14 T 13-10-2018 IPR000644 CBS domain RA13_18740 9cbcd1d569d804e87a5b983f8d360845 140 Gene3D G3DSA:3.10.580.10 1 127 2.7E-40 T 13-10-2018 RA13_03655 6bc318941f9d91a7bfaec89e8c379521 296 SUPERFAMILY SSF103481 184 287 3.66E-14 T 13-10-2018 RA13_03655 6bc318941f9d91a7bfaec89e8c379521 296 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 17 278 5.8E-69 T 13-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 RA13_03655 6bc318941f9d91a7bfaec89e8c379521 296 Pfam PF00892 EamA-like transporter family 148 281 1.2E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_03655 6bc318941f9d91a7bfaec89e8c379521 296 Pfam PF00892 EamA-like transporter family 7 137 4.3E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_03655 6bc318941f9d91a7bfaec89e8c379521 296 SUPERFAMILY SSF103481 39 140 6.93E-13 T 13-10-2018 RA13_05570 bbdb3f332b890fd68f726633f493c46a 177 PIRSF PIRSF006707 2 177 5.2E-50 T 13-10-2018 IPR026282 DNA-binding protein, MJ1563 type RA13_05570 bbdb3f332b890fd68f726633f493c46a 177 Gene3D G3DSA:1.10.10.10 7 91 8.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05570 bbdb3f332b890fd68f726633f493c46a 177 SUPERFAMILY SSF46785 8 159 8.53E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05365 ce6987e51647a2f284c62bcc963ab996 323 Pfam PF04230 Polysaccharide pyruvyl transferase 37 288 6.4E-24 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase RA13_09580 51df175706fef01ce8ced2341104f92e 311 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 311 6.8E-109 T 13-10-2018 RA13_09580 51df175706fef01ce8ced2341104f92e 311 PIRSF PIRSF000401 1 311 4.8E-110 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RA13_09580 51df175706fef01ce8ced2341104f92e 311 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 311 36.646 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RA13_09580 51df175706fef01ce8ced2341104f92e 311 Gene3D G3DSA:3.40.50.150 116 311 1.2E-63 T 13-10-2018 RA13_09580 51df175706fef01ce8ced2341104f92e 311 SUPERFAMILY SSF53335 93 310 3.85E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_09580 51df175706fef01ce8ced2341104f92e 311 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 305 1.3E-119 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RA13_19860 3e1d21031d5cef95eab92d5279fa9caa 612 SUPERFAMILY SSF69318 103 369 7.85E-15 T 13-10-2018 RA13_19860 3e1d21031d5cef95eab92d5279fa9caa 612 Gene3D G3DSA:2.60.40.10 1 93 5.9E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_19860 3e1d21031d5cef95eab92d5279fa9caa 612 Pfam PF01839 FG-GAP repeat 330 356 7.0E-5 T 13-10-2018 IPR013517 FG-GAP repeat Reactome: R-HSA-216083 RA13_02200 49a3175b16d9a5e80dc43895ca3d7cff 239 SMART SM00558 84 238 5.5E-11 T 13-10-2018 IPR003347 JmjC domain RA13_02200 49a3175b16d9a5e80dc43895ca3d7cff 239 SUPERFAMILY SSF51197 5 231 1.79E-46 T 13-10-2018 RA13_02200 49a3175b16d9a5e80dc43895ca3d7cff 239 Gene3D G3DSA:2.60.120.650 2 229 2.5E-56 T 13-10-2018 RA13_02200 49a3175b16d9a5e80dc43895ca3d7cff 239 Pfam PF13621 Cupin-like domain 20 233 1.4E-21 T 13-10-2018 RA13_16090 ab10524e2839f6961f4ba1059fc8924a 267 SUPERFAMILY SSF82861 21 109 2.75E-14 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RA13_16090 ab10524e2839f6961f4ba1059fc8924a 267 SUPERFAMILY SSF50182 111 169 7.19E-14 T 13-10-2018 IPR010920 LSM domain superfamily RA13_16090 ab10524e2839f6961f4ba1059fc8924a 267 Pfam PF00924 Mechanosensitive ion channel 68 263 4.5E-48 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RA13_16090 ab10524e2839f6961f4ba1059fc8924a 267 Gene3D G3DSA:2.30.30.60 126 175 5.2E-19 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RA13_16090 ab10524e2839f6961f4ba1059fc8924a 267 Gene3D G3DSA:3.30.70.100 176 262 1.7E-21 T 13-10-2018 RA13_16090 ab10524e2839f6961f4ba1059fc8924a 267 SUPERFAMILY SSF82689 174 262 1.27E-9 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RA13_09995 6d808d4319fe374660d464b22aea00e7 124 Pfam PF14173 ComG operon protein 7 30 124 2.7E-21 T 13-10-2018 IPR020372 Competence operon G protein 7, ComGG RA13_09995 6d808d4319fe374660d464b22aea00e7 124 ProDom PD078266 COMPETENCE COMGG LATE MACHINERY OPERON DNA THE PART PRECURSOR PROBABLY 1 124 5.0E-34 T 13-10-2018 IPR020372 Competence operon G protein 7, ComGG RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 Pfam PF01476 LysM domain 178 220 3.1E-17 T 13-10-2018 IPR018392 LysM domain RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 Gene3D G3DSA:3.40.80.10 3 164 2.8E-49 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 Gene3D G3DSA:1.10.101.10 242 318 2.4E-17 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 SUPERFAMILY SSF47090 246 315 2.2E-16 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 SUPERFAMILY SSF55846 10 158 1.87E-46 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 Gene3D G3DSA:3.10.350.10 165 233 1.3E-18 T 13-10-2018 IPR036779 LysM domain superfamily RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 SMART SM00257 177 221 2.7E-18 T 13-10-2018 IPR018392 LysM domain RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 SMART SM00644 15 153 1.2E-40 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 Pfam PF01471 Putative peptidoglycan binding domain 253 314 1.0E-16 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 SUPERFAMILY SSF54106 177 221 8.76E-12 T 13-10-2018 RA13_17070 fbb6d6749c545cd74693d2546bdbd224 319 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 25 142 4.8E-18 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RA13_00735 2143a176198c6ee5f1323e786012da54 642 Gene3D G3DSA:3.20.20.300 28 419 2.0E-164 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RA13_00735 2143a176198c6ee5f1323e786012da54 642 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 43 392 3.3E-123 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RA13_00735 2143a176198c6ee5f1323e786012da54 642 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 304 321 - T 13-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 RA13_00735 2143a176198c6ee5f1323e786012da54 642 Gene3D G3DSA:3.40.50.1700 421 642 1.2E-57 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RA13_00735 2143a176198c6ee5f1323e786012da54 642 SUPERFAMILY SSF51445 32 434 4.21E-100 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_00735 2143a176198c6ee5f1323e786012da54 642 SUPERFAMILY SSF52279 436 635 2.75E-6 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 RA13_00735 2143a176198c6ee5f1323e786012da54 642 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 436 632 2.9E-13 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 RA13_17790 9fcfd475d869d3ddc38c88a83a765e4b 163 Gene3D G3DSA:3.30.70.990 12 101 5.1E-61 T 13-10-2018 IPR035570 UPF0234, N-terminal RA13_17790 9fcfd475d869d3ddc38c88a83a765e4b 163 SUPERFAMILY SSF89963 92 163 6.8E-26 T 13-10-2018 IPR036183 YajQ-like superfamily RA13_17790 9fcfd475d869d3ddc38c88a83a765e4b 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 4 163 26.026 T 13-10-2018 IPR007551 Protein of unknown function DUF520 RA13_17790 9fcfd475d869d3ddc38c88a83a765e4b 163 Gene3D G3DSA:3.30.70.860 6 163 5.1E-61 T 13-10-2018 IPR035571 UPF0234-like, C-terminal RA13_17790 9fcfd475d869d3ddc38c88a83a765e4b 163 SUPERFAMILY SSF89963 6 90 6.8E-29 T 13-10-2018 IPR036183 YajQ-like superfamily RA13_17790 9fcfd475d869d3ddc38c88a83a765e4b 163 Pfam PF04461 Protein of unknown function (DUF520) 5 163 5.0E-61 T 13-10-2018 IPR007551 Protein of unknown function DUF520 RA13_06210 23090403eec0fe7bfae729acb42ca097 313 Gene3D G3DSA:3.40.50.300 1 232 3.2E-66 T 13-10-2018 RA13_06210 23090403eec0fe7bfae729acb42ca097 313 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_06210 23090403eec0fe7bfae729acb42ca097 313 SUPERFAMILY SSF52540 5 223 8.8E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06210 23090403eec0fe7bfae729acb42ca097 313 SMART SM00382 31 235 4.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_06210 23090403eec0fe7bfae729acb42ca097 313 Pfam PF00005 ABC transporter 23 161 1.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_00065 185ff68c334cbcda73a04dd04bd19dd2 257 TIGRFAM TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family 32 240 5.2E-79 T 13-10-2018 IPR022493 Integral membrane YkoY RA13_00065 185ff68c334cbcda73a04dd04bd19dd2 257 Pfam PF03741 Integral membrane protein TerC family 35 212 6.4E-51 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RA13_00065 185ff68c334cbcda73a04dd04bd19dd2 257 SUPERFAMILY SSF103473 30 238 7.19E-5 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 Pfam PF02603 HPr Serine kinase N terminus 4 127 5.0E-39 T 13-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 Gene3D G3DSA:3.40.50.300 132 310 8.3E-76 T 13-10-2018 RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 SUPERFAMILY SSF75138 4 131 2.09E-38 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 Gene3D G3DSA:3.40.1390.20 1 131 3.2E-43 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 Pfam PF07475 HPr Serine kinase C-terminal domain 130 298 3.7E-77 T 13-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 3 306 41.875 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 SUPERFAMILY SSF53795 132 297 7.63E-41 T 13-10-2018 RA13_05010 523cf757816b30cd270f7fde7ae0fb16 310 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 7 301 8.3E-118 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 RA13_17890 9ce2e7b01f0398a3090204c52cf74ce1 314 Gene3D G3DSA:1.10.357.140 28 187 3.6E-17 T 13-10-2018 RA13_17890 9ce2e7b01f0398a3090204c52cf74ce1 314 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 18 306 1.6E-96 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RA13_17890 9ce2e7b01f0398a3090204c52cf74ce1 314 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 78 100 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site RA13_17890 9ce2e7b01f0398a3090204c52cf74ce1 314 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 16 307 18.275 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RA13_17890 9ce2e7b01f0398a3090204c52cf74ce1 314 Pfam PF01040 UbiA prenyltransferase family 35 291 2.4E-58 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RA13_04080 43367275dba606c4b39ee4aa5834863a 436 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 45.386 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_04080 43367275dba606c4b39ee4aa5834863a 436 Gene3D G3DSA:3.65.10.10 6 415 2.2E-173 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RA13_04080 43367275dba606c4b39ee4aa5834863a 436 SUPERFAMILY SSF55205 2 418 3.4E-141 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RA13_04080 43367275dba606c4b39ee4aa5834863a 436 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 416 1.6E-181 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_04080 43367275dba606c4b39ee4aa5834863a 436 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 1.3E-122 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RA13_04080 43367275dba606c4b39ee4aa5834863a 436 Gene3D G3DSA:3.65.10.10 20 231 2.2E-173 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RA13_12725 81b681a4782adb0641ab1fce330f7434 170 Pfam PF00578 AhpC/TSA family 37 152 2.1E-30 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_12725 81b681a4782adb0641ab1fce330f7434 170 SUPERFAMILY SSF52833 9 167 1.08E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_12725 81b681a4782adb0641ab1fce330f7434 170 Gene3D G3DSA:3.40.30.10 23 168 1.6E-45 T 13-10-2018 RA13_20055 86383da878d94ff6ce263be706a2902a 492 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 4 488 1.3E-229 T 13-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 RA13_20055 86383da878d94ff6ce263be706a2902a 492 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 33 431 8.5E-97 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_20055 86383da878d94ff6ce263be706a2902a 492 Gene3D G3DSA:1.20.1730.10 20 490 7.4E-94 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RA13_20055 86383da878d94ff6ce263be706a2902a 492 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 413 433 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site RA13_20055 86383da878d94ff6ce263be706a2902a 492 Pfam PF00474 Sodium:solute symporter family 33 431 5.5E-109 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_13235 882d85b479bf6a56b0f17842f036799c 339 SUPERFAMILY SSF50969 131 329 1.73E-6 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like RA13_20930 d245b84e5cfd099be6ec6c22075c2d40 560 Gene3D G3DSA:3.40.50.300 1 373 1.3E-24 T 13-10-2018 RA13_20930 d245b84e5cfd099be6ec6c22075c2d40 560 Pfam PF13175 AAA ATPase domain 1 336 4.2E-31 T 13-10-2018 RA13_20930 d245b84e5cfd099be6ec6c22075c2d40 560 SUPERFAMILY SSF52540 1 338 1.9E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14955 ced726d088fa3fedb5e8ac186f5bcfa6 209 Pfam PF04509 CheC-like family 10 45 2.3E-13 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 RA13_14955 ced726d088fa3fedb5e8ac186f5bcfa6 209 Pfam PF04509 CheC-like family 112 147 2.6E-12 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 RA13_14955 ced726d088fa3fedb5e8ac186f5bcfa6 209 Gene3D G3DSA:3.40.1550.10 6 207 7.9E-58 T 13-10-2018 IPR028976 CheC-like superfamily RA13_14955 ced726d088fa3fedb5e8ac186f5bcfa6 209 SUPERFAMILY SSF103039 6 206 2.09E-49 T 13-10-2018 IPR028976 CheC-like superfamily RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 SUPERFAMILY SSF69189 280 373 9.02E-22 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 Gene3D G3DSA:3.40.710.10 18 279 1.8E-89 T 13-10-2018 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 260 1.1E-91 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 3.4E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 3.4E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 3.4E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 SUPERFAMILY SSF56601 1 280 4.2E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 SMART SM00936 280 371 2.0E-28 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 280 371 1.1E-20 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_10615 13347ebbf9b284d795d6a6df361e5838 389 Gene3D G3DSA:2.60.410.10 280 370 1.2E-21 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RA13_01905 4f3768d2749d3602000916a706334603 279 SMART SM00849 21 251 0.004 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_01905 4f3768d2749d3602000916a706334603 279 Gene3D G3DSA:3.60.15.10 1 276 2.4E-77 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_01905 4f3768d2749d3602000916a706334603 279 SUPERFAMILY SSF56281 7 256 3.82E-31 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_01905 4f3768d2749d3602000916a706334603 279 Pfam PF00753 Metallo-beta-lactamase superfamily 21 81 1.8E-12 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_01545 7266eb156b4027badab058e868a67b19 247 Gene3D G3DSA:3.40.50.150 8 247 1.2E-70 T 13-10-2018 RA13_01545 7266eb156b4027badab058e868a67b19 247 SUPERFAMILY SSF53335 16 199 1.96E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_01545 7266eb156b4027badab058e868a67b19 247 Pfam PF05175 Methyltransferase small domain 19 143 4.0E-11 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RA13_14970 22009886882b2e758328ab40eb7cb820 355 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 2 351 38.558 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RA13_14970 22009886882b2e758328ab40eb7cb820 355 Pfam PF01339 CheB methylesterase 166 346 4.2E-56 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RA13_14970 22009886882b2e758328ab40eb7cb820 355 PIRSF PIRSF000876 1 355 1.7E-133 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 RA13_14970 22009886882b2e758328ab40eb7cb820 355 SUPERFAMILY SSF52738 164 351 9.94E-61 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RA13_14970 22009886882b2e758328ab40eb7cb820 355 Gene3D G3DSA:3.40.50.180 156 355 1.7E-65 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal RA13_14970 22009886882b2e758328ab40eb7cb820 355 Gene3D G3DSA:3.40.50.2300 1 135 8.2E-35 T 13-10-2018 RA13_14970 22009886882b2e758328ab40eb7cb820 355 SUPERFAMILY SSF52172 2 107 6.55E-31 T 13-10-2018 IPR011006 CheY-like superfamily RA13_14970 22009886882b2e758328ab40eb7cb820 355 Pfam PF00072 Response regulator receiver domain 4 108 9.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_14970 22009886882b2e758328ab40eb7cb820 355 SMART SM00448 2 125 1.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_12390 8df744e904a9c33e14fd41beebe1dccb 333 SUPERFAMILY SSF52283 1 139 6.17E-22 T 13-10-2018 RA13_12390 8df744e904a9c33e14fd41beebe1dccb 333 Gene3D G3DSA:3.40.50.720 101 291 7.0E-87 T 13-10-2018 RA13_12390 8df744e904a9c33e14fd41beebe1dccb 333 Gene3D G3DSA:3.40.50.720 3 310 7.0E-87 T 13-10-2018 RA13_12390 8df744e904a9c33e14fd41beebe1dccb 333 SUPERFAMILY SSF51735 106 291 3.28E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_12390 8df744e904a9c33e14fd41beebe1dccb 333 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 291 1.6E-55 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RA13_12390 8df744e904a9c33e14fd41beebe1dccb 333 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 3 112 1.7E-13 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RA13_12390 8df744e904a9c33e14fd41beebe1dccb 333 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site RA13_20455 d09fad062134a54a105a1b4584007a0e 324 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 2 323 5.0E-111 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RA13_20455 d09fad062134a54a105a1b4584007a0e 324 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 323 28.869 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RA13_20455 d09fad062134a54a105a1b4584007a0e 324 Gene3D G3DSA:3.30.1330.10 1 145 6.8E-41 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20455 d09fad062134a54a105a1b4584007a0e 324 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 306 3.4E-8 T 13-10-2018 IPR010918 PurM-like, C-terminal domain RA13_20455 d09fad062134a54a105a1b4584007a0e 324 SUPERFAMILY SSF56042 144 307 8.52E-27 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_20455 d09fad062134a54a105a1b4584007a0e 324 SUPERFAMILY SSF55326 3 140 8.37E-32 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RA13_20455 d09fad062134a54a105a1b4584007a0e 324 Gene3D G3DSA:3.90.650.10 146 323 3.5E-44 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RA13_20455 d09fad062134a54a105a1b4584007a0e 324 Pfam PF00586 AIR synthase related protein, N-terminal domain 26 139 3.3E-21 T 13-10-2018 IPR016188 PurM-like, N-terminal domain RA13_20455 d09fad062134a54a105a1b4584007a0e 324 PIRSF PIRSF005303 1 323 1.3E-97 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RA13_21920 a1251923b8e4c5d190b65f4bfeaedb9f 534 Gene3D G3DSA:1.20.1720.10 37 245 6.1E-57 T 13-10-2018 RA13_21920 a1251923b8e4c5d190b65f4bfeaedb9f 534 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 37 517 1.3E-87 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RA13_21920 a1251923b8e4c5d190b65f4bfeaedb9f 534 Pfam PF07690 Major Facilitator Superfamily 41 432 2.9E-57 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_21920 a1251923b8e4c5d190b65f4bfeaedb9f 534 SUPERFAMILY SSF103473 27 525 4.32E-78 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_03080 a8128048bbd3e3f7cc0f1640917cce7b 278 PIRSF PIRSF006483 1 278 1.4E-82 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_03080 a8128048bbd3e3f7cc0f1640917cce7b 278 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 8 210 1.5E-61 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_03080 a8128048bbd3e3f7cc0f1640917cce7b 278 Gene3D G3DSA:3.30.70.120 188 263 2.7E-23 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_03080 a8128048bbd3e3f7cc0f1640917cce7b 278 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 216 270 8.8E-23 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 SUPERFAMILY SSF52540 423 665 7.56E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 Gene3D G3DSA:1.20.1560.10 131 413 3.5E-67 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 SUPERFAMILY SSF90123 5 412 1.57E-70 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 Pfam PF00005 ABC transporter 446 595 4.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 Pfam PF00664 ABC transporter transmembrane region 147 385 7.4E-41 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 Gene3D G3DSA:3.40.50.300 426 672 1.0E-87 T 13-10-2018 RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 ProSitePatterns PS00211 ABC transporters family signature. 567 581 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_18465 a60c27c915325073c2bd44f05cf18d7d 673 SMART SM00382 455 641 2.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_02520 31f784b78f413d9cd79f22bd54884a99 386 Gene3D G3DSA:1.10.357.10 201 375 1.5E-27 T 13-10-2018 RA13_02520 31f784b78f413d9cd79f22bd54884a99 386 SUPERFAMILY SSF46689 8 66 5.49E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_02520 31f784b78f413d9cd79f22bd54884a99 386 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 53 2.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_02520 31f784b78f413d9cd79f22bd54884a99 386 Pfam PF00440 Bacterial regulatory proteins, tetR family 223 257 1.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_02520 31f784b78f413d9cd79f22bd54884a99 386 SUPERFAMILY SSF46689 202 270 1.8E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_02520 31f784b78f413d9cd79f22bd54884a99 386 Gene3D G3DSA:1.10.357.10 5 186 9.8E-27 T 13-10-2018 RA13_03890 ea1845927b0ee50ccde496dcb5f58aaf 173 Gene3D G3DSA:3.40.50.10490 1 173 1.2E-56 T 13-10-2018 RA13_03890 ea1845927b0ee50ccde496dcb5f58aaf 173 SUPERFAMILY SSF53697 2 161 3.34E-9 T 13-10-2018 RA13_03890 ea1845927b0ee50ccde496dcb5f58aaf 173 Pfam PF10740 Domain of unknown function (DUF2529) 1 169 1.8E-65 T 13-10-2018 IPR019676 Domain of unknown function (DUF2529) RA13_03380 d619295319c0ceecdce8cac989d59fa9 222 Gene3D G3DSA:3.20.20.70 1 221 2.2E-81 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_03380 d619295319c0ceecdce8cac989d59fa9 222 SUPERFAMILY SSF51391 7 216 1.83E-70 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03380 d619295319c0ceecdce8cac989d59fa9 222 Pfam PF02581 Thiamine monophosphate synthase 15 198 3.4E-62 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03380 d619295319c0ceecdce8cac989d59fa9 222 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 14 210 9.1E-70 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_03380 d619295319c0ceecdce8cac989d59fa9 222 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 13 216 28.817 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 6 372 9.4E-135 T 13-10-2018 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 21 376 49.23 T 13-10-2018 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 Gene3D G3DSA:3.10.400.10 4 153 1.0E-46 T 13-10-2018 RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 SUPERFAMILY SSF88697 6 154 2.49E-46 T 13-10-2018 IPR015947 PUA-like superfamily RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 Gene3D G3DSA:3.40.50.620 162 374 8.5E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 SUPERFAMILY SSF52374 162 374 1.88E-85 T 13-10-2018 RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 Pfam PF14306 PUA-like domain 5 152 4.2E-47 T 13-10-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_17840 cbe47e829c87556b772ce3f7541fe019 391 Pfam PF01747 ATP-sulfurylase 162 372 2.0E-95 T 13-10-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 RA13_10180 0abff783588c1d859bdb6d8b43c610f1 448 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 4 441 30.739 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RA13_10180 0abff783588c1d859bdb6d8b43c610f1 448 Pfam PF02601 Exonuclease VII, large subunit 125 438 7.2E-102 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RA13_10180 0abff783588c1d859bdb6d8b43c610f1 448 Pfam PF13742 OB-fold nucleic acid binding domain 8 102 3.0E-30 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RA13_10180 0abff783588c1d859bdb6d8b43c610f1 448 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 8 358 3.5E-140 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RA13_08375 3eeb3ab26d40284b9ac2698d65ee39de 451 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 78 89 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RA13_08375 3eeb3ab26d40284b9ac2698d65ee39de 451 Pfam PF02754 Cysteine-rich domain 198 280 3.9E-19 T 13-10-2018 IPR004017 Cysteine-rich domain RA13_08375 3eeb3ab26d40284b9ac2698d65ee39de 451 Pfam PF02754 Cysteine-rich domain 329 414 2.6E-17 T 13-10-2018 IPR004017 Cysteine-rich domain RA13_08375 3eeb3ab26d40284b9ac2698d65ee39de 451 Gene3D G3DSA:1.10.1060.10 1 114 1.6E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RA13_08375 3eeb3ab26d40284b9ac2698d65ee39de 451 SUPERFAMILY SSF46548 7 106 4.71E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RA13_08375 3eeb3ab26d40284b9ac2698d65ee39de 451 PIRSF PIRSF000139 6 442 2.3E-141 T 13-10-2018 RA13_08375 3eeb3ab26d40284b9ac2698d65ee39de 451 Pfam PF13183 4Fe-4S dicluster domain 23 92 2.2E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RA13_16395 f0709312e916efe0603896d892fb0ea3 209 Gene3D G3DSA:3.40.225.10 2 207 2.0E-49 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RA13_16395 f0709312e916efe0603896d892fb0ea3 209 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 206 109.53 T 13-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 RA13_16395 f0709312e916efe0603896d892fb0ea3 209 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 195 1.2E-37 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RA13_16395 f0709312e916efe0603896d892fb0ea3 209 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 11 202 1.4E-66 T 13-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 RA13_16395 f0709312e916efe0603896d892fb0ea3 209 SUPERFAMILY SSF53639 3 203 2.75E-44 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RA13_16395 f0709312e916efe0603896d892fb0ea3 209 SMART SM01007 9 198 7.5E-42 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RA13_10020 c0016e715cd38e2ecf26246460b6f94c 260 TIGRFAM TIGR04088 cognate_SipW: SipW-cognate class signal peptide 11 44 1.9E-10 T 13-10-2018 IPR023833 Signal peptide, camelysin RA13_10020 c0016e715cd38e2ecf26246460b6f94c 260 Pfam PF12389 Camelysin metallo-endopeptidase 3 235 2.1E-38 T 13-10-2018 IPR022121 Peptidase M73, camelysin RA13_06340 8985fca13b8728749e51b921f5133b66 144 Pfam PF01934 Protein of unknown function DUF86 25 128 2.7E-19 T 13-10-2018 IPR008201 Protein of unknown function DUF86 RA13_06340 8985fca13b8728749e51b921f5133b66 144 Gene3D G3DSA:1.20.120.580 1 144 9.1E-57 T 13-10-2018 IPR037038 Bsu32300-like superfamily RA13_16910 15b7eb2d657cc74d2d86b61c8b244e74 348 Pfam PF04865 Baseplate J-like protein 62 306 1.1E-61 T 13-10-2018 IPR006949 Baseplate protein J-like RA13_00080 0ee5634a8e002a0bc36360c29d988089 199 Gene3D G3DSA:2.60.60.30 19 196 7.6E-61 T 13-10-2018 RA13_00080 0ee5634a8e002a0bc36360c29d988089 199 Pfam PF02342 TerD domain 2 198 1.4E-73 T 13-10-2018 IPR003325 TerD domain RA13_06720 295793b2046df727211e1b8ba82c809c 235 Gene3D G3DSA:3.40.50.2300 1 149 1.2E-32 T 13-10-2018 RA13_06720 295793b2046df727211e1b8ba82c809c 235 SUPERFAMILY SSF52172 1 175 1.85E-36 T 13-10-2018 IPR011006 CheY-like superfamily RA13_06720 295793b2046df727211e1b8ba82c809c 235 Pfam PF00072 Response regulator receiver domain 4 115 3.2E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_06720 295793b2046df727211e1b8ba82c809c 235 SMART SM00448 2 115 7.0E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_06720 295793b2046df727211e1b8ba82c809c 235 PIRSF PIRSF006171 1 227 1.5E-84 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 RA13_21290 8889accf3ee1f722322e05da28c0d21e 167 Gene3D G3DSA:2.60.120.10 1 167 2.9E-67 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_21290 8889accf3ee1f722322e05da28c0d21e 167 SUPERFAMILY SSF51182 48 162 5.09E-11 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_12355 4757d406db999d37a768c7c1480608f7 186 Gene3D G3DSA:1.10.357.10 52 185 2.7E-27 T 13-10-2018 RA13_12355 4757d406db999d37a768c7c1480608f7 186 Gene3D G3DSA:1.10.10.60 1 50 1.7E-20 T 13-10-2018 RA13_12355 4757d406db999d37a768c7c1480608f7 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 47 2.9E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_12355 4757d406db999d37a768c7c1480608f7 186 SUPERFAMILY SSF46689 8 71 4.36E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_12355 4757d406db999d37a768c7c1480608f7 186 SUPERFAMILY SSF48498 79 183 6.67E-19 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_12355 4757d406db999d37a768c7c1480608f7 186 Pfam PF13305 WHG domain 85 160 4.8E-11 T 13-10-2018 IPR025996 WHG domain RA13_04365 f5ac71e638999ac71890de7ed29396b4 248 Pfam PF13807 G-rich domain on putative tyrosine kinase 142 194 1.3E-7 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain RA13_04365 f5ac71e638999ac71890de7ed29396b4 248 Pfam PF02706 Chain length determinant protein 4 93 1.6E-18 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 RA13_18535 83d5a0d7de18c69382656fa5be08fcc6 142 Pfam PF13411 MerR HTH family regulatory protein 11 78 5.9E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_18535 83d5a0d7de18c69382656fa5be08fcc6 142 Gene3D G3DSA:1.10.1660.10 3 121 5.7E-24 T 13-10-2018 RA13_18535 83d5a0d7de18c69382656fa5be08fcc6 142 SMART SM00422 11 79 1.4E-28 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_18535 83d5a0d7de18c69382656fa5be08fcc6 142 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 46 66 1.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_18535 83d5a0d7de18c69382656fa5be08fcc6 142 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 12 23 1.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_18535 83d5a0d7de18c69382656fa5be08fcc6 142 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 23 36 1.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_18535 83d5a0d7de18c69382656fa5be08fcc6 142 SUPERFAMILY SSF46955 11 115 3.55E-21 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_07230 613ab00685bab054027e010194c8c8ac 379 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 2 374 47.676 T 13-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RA13_07230 613ab00685bab054027e010194c8c8ac 379 SUPERFAMILY SSF53448 2 339 7.68E-84 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_07230 613ab00685bab054027e010194c8c8ac 379 Gene3D G3DSA:2.160.10.10 274 376 8.0E-24 T 13-10-2018 RA13_07230 613ab00685bab054027e010194c8c8ac 379 SUPERFAMILY SSF51161 292 362 2.67E-13 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RA13_07230 613ab00685bab054027e010194c8c8ac 379 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 98 106 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RA13_07230 613ab00685bab054027e010194c8c8ac 379 Pfam PF00483 Nucleotidyl transferase 7 259 5.1E-71 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RA13_07230 613ab00685bab054027e010194c8c8ac 379 Gene3D G3DSA:3.90.550.10 1 273 1.5E-92 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_07230 613ab00685bab054027e010194c8c8ac 379 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 11 30 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RA13_07230 613ab00685bab054027e010194c8c8ac 379 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 5 359 3.4E-144 T 13-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RA13_07230 613ab00685bab054027e010194c8c8ac 379 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 189 199 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 RA13_07230 613ab00685bab054027e010194c8c8ac 379 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 316 343 1.1E-4 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_06810 c191fd2b4c6aae36acaca28c94d59e7b 390 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_06810 c191fd2b4c6aae36acaca28c94d59e7b 390 SUPERFAMILY SSF56796 1 388 1.02E-115 T 13-10-2018 RA13_06810 c191fd2b4c6aae36acaca28c94d59e7b 390 Gene3D G3DSA:1.20.1090.10 185 389 2.6E-44 T 13-10-2018 RA13_06810 c191fd2b4c6aae36acaca28c94d59e7b 390 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_06810 c191fd2b4c6aae36acaca28c94d59e7b 390 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 367 1.8E-99 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RA13_06810 c191fd2b4c6aae36acaca28c94d59e7b 390 Gene3D G3DSA:3.40.50.1970 1 184 8.4E-57 T 13-10-2018 RA13_00490 4e64229b3ec43491c44d492b14ccbe5c 267 Gene3D G3DSA:3.40.710.10 31 267 3.6E-95 T 13-10-2018 RA13_00490 4e64229b3ec43491c44d492b14ccbe5c 267 Pfam PF00905 Penicillin binding protein transpeptidase domain 66 259 1.7E-32 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_00490 4e64229b3ec43491c44d492b14ccbe5c 267 ProSitePatterns PS00337 Beta-lactamase class-D active site. 74 84 - T 13-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 RA13_00490 4e64229b3ec43491c44d492b14ccbe5c 267 SUPERFAMILY SSF56601 46 260 4.91E-35 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 SUPERFAMILY SSF50156 330 445 9.33E-19 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 Pfam PF13365 Trypsin-like peptidase domain 164 308 3.8E-31 T 13-10-2018 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 Gene3D G3DSA:2.30.42.10 347 452 1.7E-24 T 13-10-2018 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 PRINTS PR00834 HtrA/DegQ protease family signature 176 188 1.5E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 PRINTS PR00834 HtrA/DegQ protease family signature 238 262 1.5E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 PRINTS PR00834 HtrA/DegQ protease family signature 279 296 1.5E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 PRINTS PR00834 HtrA/DegQ protease family signature 197 217 1.5E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 PRINTS PR00834 HtrA/DegQ protease family signature 301 318 1.5E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 PRINTS PR00834 HtrA/DegQ protease family signature 393 405 1.5E-38 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 Gene3D G3DSA:2.40.10.10 229 346 3.4E-41 T 13-10-2018 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 SMART SM00228 365 436 2.2E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 Gene3D G3DSA:2.40.10.10 104 227 7.0E-28 T 13-10-2018 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 Pfam PF13180 PDZ domain 346 445 1.3E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_16815 9f6acaa0138a1c9a4d69f96a319c1194 453 SUPERFAMILY SSF50494 118 341 2.91E-57 T 13-10-2018 IPR009003 Peptidase S1, PA clan RA13_13470 f891dee8c6ee87179f41a29162856d55 217 Pfam PF04893 Yip1 domain 15 207 1.3E-10 T 13-10-2018 IPR006977 Yip1 domain GO:0016020 RA13_14415 48b74f6631e207b58527d5ad7651f50d 202 Pfam PF13884 Chaperone of endosialidase 97 147 1.3E-7 T 13-10-2018 IPR030392 Intramolecular chaperone auto-processing domain RA13_19750 fb0486efbe88357468ab7a4d1832e47b 640 Pfam PF00884 Sulfatase 244 536 4.2E-34 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RA13_19750 fb0486efbe88357468ab7a4d1832e47b 640 SUPERFAMILY SSF53649 242 636 1.66E-77 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_19750 fb0486efbe88357468ab7a4d1832e47b 640 Gene3D G3DSA:3.40.720.10 236 546 5.8E-79 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_19750 fb0486efbe88357468ab7a4d1832e47b 640 PIRSF PIRSF005091 1 619 1.9E-195 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like RA13_05340 1d0a94810b6568bcc99a56bdb6b80199 342 SUPERFAMILY SSF53448 3 224 1.52E-56 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_05340 1d0a94810b6568bcc99a56bdb6b80199 342 Pfam PF00535 Glycosyl transferase family 2 6 153 2.9E-36 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_05340 1d0a94810b6568bcc99a56bdb6b80199 342 Gene3D G3DSA:3.90.550.10 1 205 1.4E-56 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_08540 c149baf727101fb19ad542ca340240b0 198 SUPERFAMILY SSF52972 3 197 7.59E-72 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RA13_08540 c149baf727101fb19ad542ca340240b0 198 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 7 196 2.2E-74 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RA13_08540 c149baf727101fb19ad542ca340240b0 198 Gene3D G3DSA:3.90.950.10 2 198 6.8E-79 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RA13_08540 c149baf727101fb19ad542ca340240b0 198 Pfam PF01725 Ham1 family 8 194 1.6E-62 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RA13_08540 c149baf727101fb19ad542ca340240b0 198 Hamap MF_01405 dITP/XTP pyrophosphatase. 5 198 50.927 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 RA13_00195 7867e8069e94c37de636983c82f566bd 583 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 67 162 9.5E-33 T 13-10-2018 IPR032093 Phospholipase D, N-terminal RA13_00195 7867e8069e94c37de636983c82f566bd 583 Pfam PF09423 PhoD-like phosphatase 175 512 1.6E-119 T 13-10-2018 IPR018946 Alkaline phosphatase D-related RA13_00195 7867e8069e94c37de636983c82f566bd 583 Gene3D G3DSA:3.60.21.70 166 583 1.3E-185 T 13-10-2018 IPR038607 PhoD-like superfamily RA13_00195 7867e8069e94c37de636983c82f566bd 583 SUPERFAMILY SSF56300 171 515 1.4E-41 T 13-10-2018 RA13_00195 7867e8069e94c37de636983c82f566bd 583 Gene3D G3DSA:2.60.40.380 57 165 4.6E-43 T 13-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 SUPERFAMILY SSF50129 1 178 7.91E-48 T 13-10-2018 IPR011032 GroES-like superfamily RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 SMART SM00829 8 321 2.3E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 138 1.3E-26 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 Gene3D G3DSA:3.40.50.720 156 291 5.7E-96 T 13-10-2018 RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 Pfam PF00107 Zinc-binding dehydrogenase 179 304 2.0E-23 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 Gene3D G3DSA:3.90.180.10 9 324 5.7E-96 T 13-10-2018 RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RA13_20285 035dc6421f0b31bb3b771c2be72d583f 346 SUPERFAMILY SSF51735 143 308 1.78E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_11080 d734ac92669673d065c88452d5d71d7e 127 TIGRFAM TIGR01796 CM_mono_aroH: chorismate mutase 3 119 8.2E-46 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_11080 d734ac92669673d065c88452d5d71d7e 127 Pfam PF07736 Chorismate mutase type I 3 119 7.9E-47 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_11080 d734ac92669673d065c88452d5d71d7e 127 Gene3D G3DSA:3.30.1330.40 1 127 3.5E-53 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RA13_11080 d734ac92669673d065c88452d5d71d7e 127 ProDom PD031888 MUTASE CHORISMATE AROH THE CLASS ISOMERASE TRANSCRIPTION BIOSYNTHESIS CM 3D-STRUCTURE 9 127 1.0E-57 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_11080 d734ac92669673d065c88452d5d71d7e 127 SUPERFAMILY SSF55298 1 126 2.2E-48 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RA13_11080 d734ac92669673d065c88452d5d71d7e 127 PIRSF PIRSF005965 1 125 2.5E-50 T 13-10-2018 IPR008243 Chorismate mutase, AroH class KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RA13_15530 e657f9ae2393b3138e8099de9a5fa4bc 309 Pfam PF03419 Sporulation factor SpoIIGA 3 299 1.1E-82 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 RA13_15530 e657f9ae2393b3138e8099de9a5fa4bc 309 TIGRFAM TIGR02854 spore_II_GA: sigma-E processing peptidase SpoIIGA 2 300 1.7E-91 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 RA13_15530 e657f9ae2393b3138e8099de9a5fa4bc 309 PIRSF PIRSF018571 1 302 8.9E-103 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 RA13_00635 ead327cf0b7f91bfd0698bde9665237c 177 Gene3D G3DSA:3.40.1050.10 1 161 1.2E-12 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RA13_00635 ead327cf0b7f91bfd0698bde9665237c 177 SUPERFAMILY SSF53056 4 161 2.49E-16 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RA13_04845 456ab361d84b9e217f2265b2d97c6498 74 Pfam PF02599 Global regulator protein family 1 53 5.0E-26 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RA13_04845 456ab361d84b9e217f2265b2d97c6498 74 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 68 18.128 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RA13_04845 456ab361d84b9e217f2265b2d97c6498 74 Gene3D G3DSA:3.30.70.1680 1 63 5.3E-31 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 RA13_04845 456ab361d84b9e217f2265b2d97c6498 74 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 69 1.2E-34 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RA13_04845 456ab361d84b9e217f2265b2d97c6498 74 SUPERFAMILY SSF117130 1 55 5.36E-21 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 RA13_04845 456ab361d84b9e217f2265b2d97c6498 74 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 5.0E-19 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RA13_09870 a318b7f0c89d8e2a1169b71156a37ab5 49 Pfam PF00471 Ribosomal protein L33 3 49 4.3E-22 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09870 a318b7f0c89d8e2a1169b71156a37ab5 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_09870 a318b7f0c89d8e2a1169b71156a37ab5 49 Gene3D G3DSA:2.20.28.120 1 49 1.1E-23 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09870 a318b7f0c89d8e2a1169b71156a37ab5 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 19.083 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09870 a318b7f0c89d8e2a1169b71156a37ab5 49 SUPERFAMILY SSF57829 1 49 1.59E-18 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RA13_09870 a318b7f0c89d8e2a1169b71156a37ab5 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 2.3E-19 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_20555 6af02bb59d17a874c5d7155dde7999e1 320 Pfam PF00571 CBS domain 267 309 0.0012 T 13-10-2018 IPR000644 CBS domain RA13_20555 6af02bb59d17a874c5d7155dde7999e1 320 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_20555 6af02bb59d17a874c5d7155dde7999e1 320 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 15 300 1.5E-100 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 RA13_20555 6af02bb59d17a874c5d7155dde7999e1 320 Gene3D G3DSA:3.40.50.300 1 300 1.8E-78 T 13-10-2018 RA13_20555 6af02bb59d17a874c5d7155dde7999e1 320 Pfam PF00005 ABC transporter 22 164 9.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_20555 6af02bb59d17a874c5d7155dde7999e1 320 SUPERFAMILY SSF52540 1 241 2.0E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20555 6af02bb59d17a874c5d7155dde7999e1 320 SMART SM00382 27 214 3.8E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 Pfam PF00874 PRD domain 181 272 2.9E-23 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 Pfam PF00874 PRD domain 74 161 1.0E-25 T 13-10-2018 IPR011608 PRD domain GO:0006355 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 SUPERFAMILY SSF50151 1 52 4.97E-16 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 SUPERFAMILY SSF63520 54 163 1.7E-31 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 SUPERFAMILY SSF63520 172 273 4.84E-27 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 SMART SM01061 1 58 1.2E-26 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 Pfam PF03123 CAT RNA binding domain 1 55 3.9E-20 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 Gene3D G3DSA:1.10.1790.10 168 276 7.5E-27 T 13-10-2018 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 Gene3D G3DSA:2.30.24.10 1 55 3.0E-23 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 Gene3D G3DSA:1.10.1790.10 64 165 1.8E-34 T 13-10-2018 RA13_03290 6112a31e0d8a709f5195572a313d66f2 280 ProSitePatterns PS00654 PRD domain signature. 97 109 - T 13-10-2018 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 RA13_02735 6e0b5f20c384640cd2ee12d6284a4b22 506 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 137 153 - T 13-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 RA13_02735 6e0b5f20c384640cd2ee12d6284a4b22 506 Pfam PF00221 Aromatic amino acid lyase 9 466 3.2E-196 T 13-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 RA13_02735 6e0b5f20c384640cd2ee12d6284a4b22 506 SUPERFAMILY SSF48557 1 495 3.53E-196 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 RA13_02735 6e0b5f20c384640cd2ee12d6284a4b22 506 Gene3D G3DSA:1.20.200.10 196 501 8.5E-122 T 13-10-2018 RA13_02735 6e0b5f20c384640cd2ee12d6284a4b22 506 Gene3D G3DSA:1.10.275.10 1 195 4.1E-71 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal RA13_02735 6e0b5f20c384640cd2ee12d6284a4b22 506 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 1 500 45.646 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_02735 6e0b5f20c384640cd2ee12d6284a4b22 506 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 2 502 1.2E-234 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RA13_12850 886513505fe8196bdde32de8006fc502 205 Pfam PF13761 Domain of unknown function (DUF4166) 15 198 5.3E-50 T 13-10-2018 IPR025311 Domain of unknown function DUF4166 RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 Gene3D G3DSA:3.40.50.300 209 370 5.8E-53 T 13-10-2018 RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 Pfam PF00271 Helicase conserved C-terminal domain 229 337 1.7E-28 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 SMART SM00487 23 220 9.3E-59 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 Gene3D G3DSA:3.30.70.330 406 481 4.8E-28 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 480 77.574 T 13-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 SMART SM00490 256 337 6.5E-33 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 Pfam PF00270 DEAD/DEAH box helicase 28 194 6.3E-48 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 SUPERFAMILY SSF52540 71 355 1.64E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 Gene3D G3DSA:3.40.50.300 1 208 3.5E-74 T 13-10-2018 RA13_02960 df48151c4ccbb6b5a77945d0ebc91f68 481 Pfam PF03880 DbpA RNA binding domain 407 477 1.3E-18 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain RA13_07735 062147714e00cf46b08f3b8dcb4803ae 281 SMART SM00849 50 257 4.1E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_07735 062147714e00cf46b08f3b8dcb4803ae 281 SUPERFAMILY SSF56281 3 262 2.88E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_07735 062147714e00cf46b08f3b8dcb4803ae 281 Gene3D G3DSA:3.60.15.10 4 269 2.1E-81 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_07735 062147714e00cf46b08f3b8dcb4803ae 281 Pfam PF00753 Metallo-beta-lactamase superfamily 54 257 2.2E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_20845 eab635b1115301a0fae19f289a9b333c 233 SUPERFAMILY SSF46894 133 229 2.38E-30 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_20845 eab635b1115301a0fae19f289a9b333c 233 Gene3D G3DSA:3.40.50.2300 1 125 2.2E-35 T 13-10-2018 RA13_20845 eab635b1115301a0fae19f289a9b333c 233 SUPERFAMILY SSF52172 3 127 1.37E-37 T 13-10-2018 IPR011006 CheY-like superfamily RA13_20845 eab635b1115301a0fae19f289a9b333c 233 Pfam PF00072 Response regulator receiver domain 6 115 1.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_20845 eab635b1115301a0fae19f289a9b333c 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 228 9.6E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_20845 eab635b1115301a0fae19f289a9b333c 233 SMART SM00448 4 114 9.0E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_20845 eab635b1115301a0fae19f289a9b333c 233 SMART SM00862 156 228 1.6E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_20845 eab635b1115301a0fae19f289a9b333c 233 Gene3D G3DSA:1.10.10.10 131 233 3.2E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_11500 c8f71e913f6674763cb71514c6b79386 301 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 298 44.482 T 13-10-2018 IPR033752 MetA family RA13_11500 c8f71e913f6674763cb71514c6b79386 301 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 37 288 1.0E-130 T 13-10-2018 RA13_11500 c8f71e913f6674763cb71514c6b79386 301 Gene3D G3DSA:3.40.50.880 1 300 5.9E-126 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_11500 c8f71e913f6674763cb71514c6b79386 301 SUPERFAMILY SSF52317 17 296 1.07E-99 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_11500 c8f71e913f6674763cb71514c6b79386 301 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 299 3.0E-131 T 13-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 RA13_11500 c8f71e913f6674763cb71514c6b79386 301 PIRSF PIRSF000450 1 301 8.4E-148 T 13-10-2018 IPR033752 MetA family RA13_11500 c8f71e913f6674763cb71514c6b79386 301 Pfam PF04204 Homoserine O-succinyltransferase 2 298 5.8E-137 T 13-10-2018 IPR033752 MetA family RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 Gene3D G3DSA:3.40.50.720 1 287 1.2E-91 T 13-10-2018 RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 SUPERFAMILY SSF51735 44 286 6.27E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 232 3.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 47 64 3.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 213 3.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 249 269 3.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 184 3.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 133 3.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 182 1.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 194 213 1.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 133 1.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 55 284 1.8E-65 T 13-10-2018 RA13_18625 e6cce09f8cbc6af8a1259f1a8feaaf45 289 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 181 209 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 SUPERFAMILY SSF52743 451 730 6.28E-79 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 647 657 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 PRINTS PR00723 Subtilisin serine protease family (S8) signature 492 505 2.2E-12 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 PRINTS PR00723 Subtilisin serine protease family (S8) signature 452 471 2.2E-12 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 PRINTS PR00723 Subtilisin serine protease family (S8) signature 646 662 2.2E-12 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 Gene3D G3DSA:2.60.120.380 34 142 9.1E-6 T 13-10-2018 RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 Gene3D G3DSA:2.60.40.10 732 803 9.9E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 Gene3D G3DSA:2.60.40.10 811 889 2.8E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 Gene3D G3DSA:3.40.50.200 411 696 4.8E-82 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 496 506 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RA13_00360 cbc3ea9faa5fafcb51f61ca16433037d 893 Pfam PF00082 Subtilase family 454 685 4.0E-44 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RA13_06860 c81af5cac08b30646034a1eff4cd9f47 132 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 132 1.5E-58 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 RA13_06860 c81af5cac08b30646034a1eff4cd9f47 132 Pfam PF01894 Uncharacterised protein family UPF0047 17 130 1.2E-40 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 RA13_06860 c81af5cac08b30646034a1eff4cd9f47 132 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 95 113 - T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 RA13_06860 c81af5cac08b30646034a1eff4cd9f47 132 SUPERFAMILY SSF111038 4 132 2.75E-47 T 13-10-2018 IPR035917 YjbQ-like superfamily RA13_06860 c81af5cac08b30646034a1eff4cd9f47 132 Gene3D G3DSA:2.60.120.460 1 131 1.3E-54 T 13-10-2018 IPR035917 YjbQ-like superfamily RA13_06860 c81af5cac08b30646034a1eff4cd9f47 132 PIRSF PIRSF004681 1 132 4.7E-38 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 RA13_02610 1cfa822e444a8d62d933daf1ebc2c9ce 290 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 3 284 6.3E-124 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 RA13_02610 1cfa822e444a8d62d933daf1ebc2c9ce 290 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 4.2E-110 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_02610 1cfa822e444a8d62d933daf1ebc2c9ce 290 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 134 145 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_02610 1cfa822e444a8d62d933daf1ebc2c9ce 290 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 283 2.6E-94 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_02610 1cfa822e444a8d62d933daf1ebc2c9ce 290 PIRSF PIRSF001359 1 284 4.5E-119 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RA13_02610 1cfa822e444a8d62d933daf1ebc2c9ce 290 SUPERFAMILY SSF51569 4 283 1.76E-95 T 13-10-2018 RA13_02610 1cfa822e444a8d62d933daf1ebc2c9ce 290 Gene3D G3DSA:3.20.20.70 1 289 1.8E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_20045 38f200d2d65cb5ef386e90a8cf50f9b2 485 Pfam PF01425 Amidase 24 465 5.5E-164 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_20045 38f200d2d65cb5ef386e90a8cf50f9b2 485 SUPERFAMILY SSF75304 1 483 6.41E-170 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_20045 38f200d2d65cb5ef386e90a8cf50f9b2 485 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 11 477 1.6E-212 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_20045 38f200d2d65cb5ef386e90a8cf50f9b2 485 Gene3D G3DSA:3.90.1300.10 2 485 2.1E-204 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_20045 38f200d2d65cb5ef386e90a8cf50f9b2 485 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 477 97.027 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RA13_20045 38f200d2d65cb5ef386e90a8cf50f9b2 485 ProSitePatterns PS00571 Amidases signature. 152 183 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RA13_18020 3d0d78c66e27308377acd1f8744b53d3 400 Gene3D G3DSA:1.20.1250.20 8 383 3.1E-43 T 13-10-2018 RA13_18020 3d0d78c66e27308377acd1f8744b53d3 400 SUPERFAMILY SSF103473 16 393 6.28E-53 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_18020 3d0d78c66e27308377acd1f8744b53d3 400 Pfam PF07690 Major Facilitator Superfamily 20 237 8.4E-24 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_18020 3d0d78c66e27308377acd1f8744b53d3 400 Pfam PF07690 Major Facilitator Superfamily 248 392 3.9E-14 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19455 c51ae33f9be96c328f7a4976aa967fe2 352 TIGRFAM TIGR00378 cax: calcium/proton exchanger 8 350 4.5E-162 T 13-10-2018 IPR004798 Calcium/proton exchanger CAX GO:0006816|GO:0015369 RA13_19455 c51ae33f9be96c328f7a4976aa967fe2 352 Gene3D G3DSA:1.20.1420.30 57 343 1.0E-25 T 13-10-2018 RA13_19455 c51ae33f9be96c328f7a4976aa967fe2 352 Pfam PF01699 Sodium/calcium exchanger protein 208 347 1.1E-17 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RA13_19455 c51ae33f9be96c328f7a4976aa967fe2 352 Pfam PF01699 Sodium/calcium exchanger protein 27 178 2.4E-20 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 RA13_19455 c51ae33f9be96c328f7a4976aa967fe2 352 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 1 350 5.0E-131 T 13-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 RA13_19455 c51ae33f9be96c328f7a4976aa967fe2 352 Gene3D G3DSA:1.20.58.1130 36 239 1.0E-25 T 13-10-2018 RA13_10720 c4e8a679865aba09a3407040629dea43 435 SUPERFAMILY SSF53850 56 426 4.98E-72 T 13-10-2018 RA13_10720 c4e8a679865aba09a3407040629dea43 435 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 159 176 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 RA13_10720 c4e8a679865aba09a3407040629dea43 435 Gene3D G3DSA:3.40.190.10 66 389 8.8E-100 T 13-10-2018 RA13_10720 c4e8a679865aba09a3407040629dea43 435 Gene3D G3DSA:3.40.190.10 165 422 8.8E-100 T 13-10-2018 RA13_10720 c4e8a679865aba09a3407040629dea43 435 PRINTS PR00181 Maltose binding protein signature 264 283 6.1E-13 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RA13_10720 c4e8a679865aba09a3407040629dea43 435 PRINTS PR00181 Maltose binding protein signature 156 175 6.1E-13 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RA13_10720 c4e8a679865aba09a3407040629dea43 435 PRINTS PR00181 Maltose binding protein signature 56 74 6.1E-13 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RA13_10720 c4e8a679865aba09a3407040629dea43 435 PRINTS PR00181 Maltose binding protein signature 389 408 6.1E-13 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RA13_10720 c4e8a679865aba09a3407040629dea43 435 PRINTS PR00181 Maltose binding protein signature 177 196 6.1E-13 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 RA13_10720 c4e8a679865aba09a3407040629dea43 435 Pfam PF13416 Bacterial extracellular solute-binding protein 69 372 2.3E-39 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RA13_18900 43549f5a1e637a737a66c050910b9a01 386 Pfam PF13646 HEAT repeats 300 370 8.6E-12 T 13-10-2018 RA13_18900 43549f5a1e637a737a66c050910b9a01 386 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 11 342 1.8E-126 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 RA13_18900 43549f5a1e637a737a66c050910b9a01 386 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RA13_18900 43549f5a1e637a737a66c050910b9a01 386 SUPERFAMILY SSF48371 265 371 7.68E-12 T 13-10-2018 IPR016024 Armadillo-type fold RA13_18900 43549f5a1e637a737a66c050910b9a01 386 Pfam PF08331 Domain of unknown function (DUF1730) 57 135 4.3E-18 T 13-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 RA13_18900 43549f5a1e637a737a66c050910b9a01 386 Gene3D G3DSA:1.25.10.10 265 383 6.2E-11 T 13-10-2018 IPR011989 Armadillo-like helical RA13_18900 43549f5a1e637a737a66c050910b9a01 386 SMART SM00567 E-Z type HEAT repeats 330 359 3.2E-4 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RA13_18900 43549f5a1e637a737a66c050910b9a01 386 SMART SM00567 E-Z type HEAT repeats 298 327 110.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 RA13_18900 43549f5a1e637a737a66c050910b9a01 386 SUPERFAMILY SSF54862 164 250 3.89E-14 T 13-10-2018 RA13_18900 43549f5a1e637a737a66c050910b9a01 386 Pfam PF13484 4Fe-4S double cluster binding domain 188 250 2.2E-17 T 13-10-2018 RA13_14685 12b363103e64a0892714980a7c05b1ca 86 Pfam PF04232 Stage V sporulation protein S (SpoVS) 2 84 1.1E-39 T 13-10-2018 IPR007347 Sporulation stage V, protein S RA13_14685 12b363103e64a0892714980a7c05b1ca 86 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 3 86 6.0E-32 T 13-10-2018 IPR007347 Sporulation stage V, protein S RA13_14685 12b363103e64a0892714980a7c05b1ca 86 Gene3D G3DSA:3.30.110.20 1 86 9.6E-36 T 13-10-2018 IPR036882 Alba-like domain superfamily GO:0003676 RA13_21630 735251eed3b9223d0d4f62476e3bd592 473 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 10 415 9.7E-114 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 RA13_21630 735251eed3b9223d0d4f62476e3bd592 473 SUPERFAMILY SSF143968 311 462 1.28E-40 T 13-10-2018 RA13_21630 735251eed3b9223d0d4f62476e3bd592 473 Hamap MF_01985 Phenolic acid decarboxylase subunit C. 1 472 73.639 T 13-10-2018 IPR032902 Phenolic acid decarboxylase subunit C GO:0016831 RA13_21630 735251eed3b9223d0d4f62476e3bd592 473 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 441 3.0E-160 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 RA13_21630 735251eed3b9223d0d4f62476e3bd592 473 Gene3D G3DSA:3.40.1670.10 326 440 3.1E-28 T 13-10-2018 RA13_21630 735251eed3b9223d0d4f62476e3bd592 473 SUPERFAMILY SSF50475 3 308 1.06E-85 T 13-10-2018 RA13_15975 01a1b9acb1f2d90016eb4d0ed00e841e 304 SUPERFAMILY SSF48179 176 300 2.89E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_15975 01a1b9acb1f2d90016eb4d0ed00e841e 304 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 302 6.3E-79 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 RA13_15975 01a1b9acb1f2d90016eb4d0ed00e841e 304 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 150 1.3E-37 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain RA13_15975 01a1b9acb1f2d90016eb4d0ed00e841e 304 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 176 297 1.8E-23 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain RA13_15975 01a1b9acb1f2d90016eb4d0ed00e841e 304 Gene3D G3DSA:3.40.50.720 1 172 7.2E-49 T 13-10-2018 RA13_15975 01a1b9acb1f2d90016eb4d0ed00e841e 304 Gene3D G3DSA:1.10.1040.10 176 300 1.1E-30 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_15975 01a1b9acb1f2d90016eb4d0ed00e841e 304 SUPERFAMILY SSF51735 1 177 4.16E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 Pfam PF01230 HIT domain 15 109 1.1E-29 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 Gene3D G3DSA:3.30.428.10 1 115 9.4E-42 T 13-10-2018 IPR036265 HIT-like superfamily RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 ProSitePatterns PS00892 HIT domain signature. 89 107 - T 13-10-2018 IPR019808 Histidine triad, conserved site RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 Gene3D G3DSA:1.20.5.1170 117 145 7.0E-22 T 13-10-2018 RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 SUPERFAMILY SSF54197 5 139 1.7E-47 T 13-10-2018 IPR036265 HIT-like superfamily RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 PRINTS PR00332 Histidine triad family signature 29 47 2.2E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 PRINTS PR00332 Histidine triad family signature 96 106 2.2E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RA13_18280 6364f321ad0861f594fdd345bf95b43f 145 PRINTS PR00332 Histidine triad family signature 8 24 2.2E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein RA13_06130 6ac8e3c264d1a40ecdd40fbc0c35b306 422 SUPERFAMILY SSF53850 19 417 7.91E-86 T 13-10-2018 RA13_06130 6ac8e3c264d1a40ecdd40fbc0c35b306 422 Gene3D G3DSA:3.40.190.10 48 375 2.7E-96 T 13-10-2018 RA13_06130 6ac8e3c264d1a40ecdd40fbc0c35b306 422 Pfam PF01547 Bacterial extracellular solute-binding protein 44 332 2.4E-50 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RA13_06130 6ac8e3c264d1a40ecdd40fbc0c35b306 422 Gene3D G3DSA:3.40.190.10 149 408 2.7E-96 T 13-10-2018 RA13_00930 282aa395aea73944db10ffebf2ea0e27 72 SMART SM00316 4 72 1.5E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_00930 282aa395aea73944db10ffebf2ea0e27 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 4.6E-40 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RA13_00930 282aa395aea73944db10ffebf2ea0e27 72 SUPERFAMILY SSF50249 1 71 4.65E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_00930 282aa395aea73944db10ffebf2ea0e27 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 9.2E-29 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RA13_00930 282aa395aea73944db10ffebf2ea0e27 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 28.425 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RA13_00930 282aa395aea73944db10ffebf2ea0e27 72 Gene3D G3DSA:2.40.50.140 1 72 1.5E-38 T 13-10-2018 RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 Pfam PF00571 CBS domain 290 338 9.7E-5 T 13-10-2018 IPR000644 CBS domain RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 Pfam PF00571 CBS domain 217 272 4.5E-5 T 13-10-2018 IPR000644 CBS domain RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 Gene3D G3DSA:3.10.580.10 195 348 2.9E-48 T 13-10-2018 RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 SUPERFAMILY SSF56176 352 433 1.64E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 Gene3D G3DSA:3.30.465.10 349 437 9.5E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 Pfam PF03471 Transporter associated domain 355 430 1.3E-16 T 13-10-2018 IPR005170 Transporter-associated domain RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 SMART SM01091 354 431 2.2E-20 T 13-10-2018 IPR005170 Transporter-associated domain RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 SUPERFAMILY SSF54631 204 341 1.64E-29 T 13-10-2018 RA13_18540 e180239f4823969e9c9920ec1f3dd9e3 444 Pfam PF01595 Domain of unknown function DUF21 7 201 3.8E-48 T 13-10-2018 IPR002550 CNNM, transmembrane domain RA13_02535 802d49b2b25914f34905c16bce689d74 454 PRINTS PR00171 Sugar transporter signature 10 20 6.4E-27 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_02535 802d49b2b25914f34905c16bce689d74 454 PRINTS PR00171 Sugar transporter signature 246 256 6.4E-27 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_02535 802d49b2b25914f34905c16bce689d74 454 PRINTS PR00171 Sugar transporter signature 335 356 6.4E-27 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_02535 802d49b2b25914f34905c16bce689d74 454 PRINTS PR00171 Sugar transporter signature 93 112 6.4E-27 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_02535 802d49b2b25914f34905c16bce689d74 454 PRINTS PR00171 Sugar transporter signature 358 370 6.4E-27 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_02535 802d49b2b25914f34905c16bce689d74 454 SUPERFAMILY SSF103473 2 432 2.09E-85 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_02535 802d49b2b25914f34905c16bce689d74 454 Pfam PF00083 Sugar (and other) transporter 5 432 2.3E-124 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RA13_02535 802d49b2b25914f34905c16bce689d74 454 Gene3D G3DSA:1.20.1250.20 1 438 1.9E-138 T 13-10-2018 RA13_02535 802d49b2b25914f34905c16bce689d74 454 ProSitePatterns PS00217 Sugar transport proteins signature 2. 98 123 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_02535 802d49b2b25914f34905c16bce689d74 454 ProSitePatterns PS00216 Sugar transport proteins signature 1. 56 73 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_02535 802d49b2b25914f34905c16bce689d74 454 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 3 430 1.3E-118 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 RA13_02535 802d49b2b25914f34905c16bce689d74 454 ProSitePatterns PS00216 Sugar transport proteins signature 1. 290 307 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_06165 a62fe56a9296331c1a1e8716e1df039b 290 SUPERFAMILY SSF54060 71 283 2.35E-62 T 13-10-2018 RA13_06165 a62fe56a9296331c1a1e8716e1df039b 290 Pfam PF04231 Endonuclease I 75 283 2.4E-43 T 13-10-2018 IPR007346 Endonuclease I GO:0004518 RA13_21270 c973404c069cf30ff4bcc54e187d990a 96 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 9 92 3.3E-28 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane RA13_21270 c973404c069cf30ff4bcc54e187d990a 96 Pfam PF12823 Domain of unknown function (DUF3817) 7 92 5.9E-22 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane RA13_07815 b41c0b3ec61dd75cc7f32a5917727905 239 Pfam PF00691 OmpA family 126 225 1.5E-19 T 13-10-2018 IPR006665 OmpA-like domain RA13_07815 b41c0b3ec61dd75cc7f32a5917727905 239 SUPERFAMILY SSF103088 114 231 9.94E-29 T 13-10-2018 IPR036737 OmpA-like domain superfamily RA13_07815 b41c0b3ec61dd75cc7f32a5917727905 239 Gene3D G3DSA:3.30.1330.60 73 239 5.3E-45 T 13-10-2018 IPR036737 OmpA-like domain superfamily RA13_07815 b41c0b3ec61dd75cc7f32a5917727905 239 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 18 62 4.6E-18 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain RA13_07795 32eec9526c4b3659ba73d621af7a7370 108 SUPERFAMILY SSF52833 5 106 6.77E-10 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_07795 32eec9526c4b3659ba73d621af7a7370 108 Pfam PF11009 Protein of unknown function (DUF2847) 6 103 9.0E-37 T 13-10-2018 IPR022551 Protein of unknown function DUF2847 RA13_07795 32eec9526c4b3659ba73d621af7a7370 108 Gene3D G3DSA:3.40.30.10 1 107 1.6E-37 T 13-10-2018 RA13_07795 32eec9526c4b3659ba73d621af7a7370 108 TIGRFAM TIGR04019 B_thiol_YtxJ: bacillithiol system protein YtxJ 6 105 1.9E-38 T 13-10-2018 IPR022551 Protein of unknown function DUF2847 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Pfam PF00310 Glutamine amidotransferases class-II 22 438 3.2E-187 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Pfam PF01493 GXGXG motif 1245 1433 7.1E-83 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Gene3D G3DSA:3.20.20.70 490 1183 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 SUPERFAMILY SSF51395 459 1204 2.34E-262 T 13-10-2018 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Gene3D G3DSA:2.160.20.60 1216 1490 1.8E-109 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Pfam PF04898 Glutamate synthase central domain 464 741 2.9E-114 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 SUPERFAMILY SSF56235 22 441 7.08E-153 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Gene3D G3DSA:3.20.20.70 443 798 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Pfam PF01645 Conserved region in glutamate synthase 799 1166 4.7E-162 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 SUPERFAMILY SSF69336 1214 1478 5.62E-91 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RA13_12470 576182c6348d56130cbf7d354d8704c0 1521 Gene3D G3DSA:3.60.20.10 22 552 0.0 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_10755 21504620699fc7b36148f8391713d085 66 PIRSF PIRSF002599 1 66 5.2E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 RA13_10755 21504620699fc7b36148f8391713d085 66 SMART SM00357 3 66 7.0E-31 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 RA13_10755 21504620699fc7b36148f8391713d085 66 PRINTS PR00050 Cold shock protein signature 39 57 3.3E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_10755 21504620699fc7b36148f8391713d085 66 PRINTS PR00050 Cold shock protein signature 24 33 3.3E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_10755 21504620699fc7b36148f8391713d085 66 PRINTS PR00050 Cold shock protein signature 4 19 3.3E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_10755 21504620699fc7b36148f8391713d085 66 SUPERFAMILY SSF50249 1 64 1.93E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_10755 21504620699fc7b36148f8391713d085 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site RA13_10755 21504620699fc7b36148f8391713d085 66 Gene3D G3DSA:2.40.50.140 1 66 2.1E-30 T 13-10-2018 RA13_10755 21504620699fc7b36148f8391713d085 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 7.1E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RA13_09970 dd48c04c64f14bd4ee798037c642eda7 345 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 108 136 - T 13-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 RA13_09970 dd48c04c64f14bd4ee798037c642eda7 345 Gene3D G3DSA:1.20.81.30 3 114 2.9E-12 T 13-10-2018 RA13_09970 dd48c04c64f14bd4ee798037c642eda7 345 Gene3D G3DSA:1.20.81.30 198 310 3.5E-16 T 13-10-2018 RA13_09970 dd48c04c64f14bd4ee798037c642eda7 345 Pfam PF00482 Type II secretion system (T2SS), protein F 17 136 8.1E-14 T 13-10-2018 IPR018076 Type II secretion system F domain RA13_09970 dd48c04c64f14bd4ee798037c642eda7 345 Pfam PF00482 Type II secretion system (T2SS), protein F 215 337 1.2E-21 T 13-10-2018 IPR018076 Type II secretion system F domain RA13_08390 bb8334dcb29da32b6ac27da3b6beaba0 70 TIGRFAM TIGR03092 SASP_sspI: small, acid-soluble spore protein I 4 68 2.2E-32 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 RA13_08390 bb8334dcb29da32b6ac27da3b6beaba0 70 Pfam PF14098 Small, acid-soluble spore protein I 3 66 2.7E-29 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 RA13_08390 bb8334dcb29da32b6ac27da3b6beaba0 70 Hamap MF_00669 Small, acid-soluble spore protein I [sspI]. 1 68 21.244 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 RA13_10635 e8e4b68e335c58ff113baf0f45fa8069 206 Pfam PF12164 Stage V sporulation protein AA 4 90 5.7E-19 T 13-10-2018 IPR021997 Stage V sporulation protein AA RA13_10635 e8e4b68e335c58ff113baf0f45fa8069 206 Gene3D G3DSA:2.60.480.10 2 95 1.2E-10 T 13-10-2018 IPR038548 Stage V sporulation protein AA, N-terminal domain superfamily RA13_17010 3233dacb174faa106aee2c927f1514d5 266 Pfam PF03592 Terminase small subunit 68 236 6.0E-41 T 13-10-2018 IPR005335 Terminase small subunit GO:0006323 RA13_17010 3233dacb174faa106aee2c927f1514d5 266 Gene3D G3DSA:1.10.10.1400 63 128 4.1E-18 T 13-10-2018 IPR038713 Terminase small subunit, N-terminal domain superfamily RA13_17010 3233dacb174faa106aee2c927f1514d5 266 Pfam PF10668 Phage terminase small subunit 5 53 1.2E-10 T 13-10-2018 IPR018925 Phage terminase small subunit RA13_21545 52eebe403e0b182e15ac508514c748e9 226 SUPERFAMILY SSF52540 3 217 1.39E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_21545 52eebe403e0b182e15ac508514c748e9 226 Gene3D G3DSA:3.40.50.300 1 225 1.6E-55 T 13-10-2018 RA13_21545 52eebe403e0b182e15ac508514c748e9 226 SMART SM00382 30 216 1.1E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_21545 52eebe403e0b182e15ac508514c748e9 226 Pfam PF00005 ABC transporter 22 167 5.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 SUPERFAMILY SSF90123 7 476 3.01E-47 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 Pfam PF00664 ABC transporter transmembrane region 15 276 6.3E-27 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 Gene3D G3DSA:1.20.1560.10 5 315 1.1E-39 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 12 534 2.8E-170 T 13-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 Pfam PF00005 ABC transporter 343 492 6.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 SMART SM00382 352 538 1.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 Gene3D G3DSA:3.40.50.300 328 567 3.0E-72 T 13-10-2018 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 ProSitePatterns PS00211 ABC transporters family signature. 464 478 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_03125 6ba0115e9c69d3d06d7b2d15c260fdf0 567 SUPERFAMILY SSF52540 340 562 7.24E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_21230 29ad7e23a3fa572146e4405b4ed0e1b8 704 Gene3D G3DSA:2.60.120.260 328 473 4.2E-12 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RA13_21230 29ad7e23a3fa572146e4405b4ed0e1b8 704 Gene3D G3DSA:2.60.120.260 39 167 3.9E-13 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RA13_21230 29ad7e23a3fa572146e4405b4ed0e1b8 704 Pfam PF03170 Bacterial cellulose synthase subunit 332 525 1.3E-12 T 13-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 RA13_21230 29ad7e23a3fa572146e4405b4ed0e1b8 704 Pfam PF03170 Bacterial cellulose synthase subunit 50 325 1.3E-20 T 13-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 RA13_05840 90214428f587950194f13d1fe919ec48 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 1.5E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_05840 90214428f587950194f13d1fe919ec48 239 Gene3D G3DSA:1.10.10.10 139 238 2.9E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05840 90214428f587950194f13d1fe919ec48 239 SUPERFAMILY SSF52172 3 168 8.64E-39 T 13-10-2018 IPR011006 CheY-like superfamily RA13_05840 90214428f587950194f13d1fe919ec48 239 Pfam PF00072 Response regulator receiver domain 6 116 1.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05840 90214428f587950194f13d1fe919ec48 239 SUPERFAMILY SSF46894 136 228 1.7E-21 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_05840 90214428f587950194f13d1fe919ec48 239 SMART SM00862 152 228 6.0E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_05840 90214428f587950194f13d1fe919ec48 239 SMART SM00448 4 115 8.1E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_05840 90214428f587950194f13d1fe919ec48 239 Gene3D G3DSA:3.40.50.12740 3 138 4.9E-40 T 13-10-2018 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 SUPERFAMILY SSF53244 333 486 1.16E-47 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 484 36.628 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 SUPERFAMILY SSF63418 4 98 5.49E-25 T 13-10-2018 IPR035911 MurE/MurF, N-terminal RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 Pfam PF01225 Mur ligase family, catalytic domain 24 79 1.8E-13 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 Gene3D G3DSA:3.40.1390.10 2 97 4.9E-28 T 13-10-2018 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 484 3.3E-182 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 417 1.6E-25 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 Gene3D G3DSA:3.90.190.20 338 490 1.8E-60 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 SUPERFAMILY SSF53623 98 332 2.09E-76 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 Pfam PF08245 Mur ligase middle domain 107 312 3.5E-56 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RA13_15595 29bf7d6546131a15b3f794b575c2467d 490 Gene3D G3DSA:3.40.1190.10 98 337 5.3E-91 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_09205 429187708f482917080d4826ef342cf4 266 Gene3D G3DSA:1.20.1080.10 4 263 1.5E-87 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RA13_09205 429187708f482917080d4826ef342cf4 266 Pfam PF01226 Formate/nitrite transporter 8 249 5.0E-80 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RA13_09205 429187708f482917080d4826ef342cf4 266 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 162 172 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site RA13_09205 429187708f482917080d4826ef342cf4 266 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 77 86 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site RA13_09205 429187708f482917080d4826ef342cf4 266 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 22 253 2.0E-79 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RA13_12060 85148d8c9b5ca775dfb0e3117feb8a86 119 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 8 114 3.7E-11 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor RA13_12060 85148d8c9b5ca775dfb0e3117feb8a86 119 Gene3D G3DSA:2.40.10.270 4 116 2.1E-20 T 13-10-2018 IPR038666 Bacteriophage SPP1, head-tail adaptor superfamily RA13_12060 85148d8c9b5ca775dfb0e3117feb8a86 119 Pfam PF05521 Phage head-tail joining protein 9 112 8.8E-23 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor RA13_01940 476571929b02d6328b01fbe331881456 126 SUPERFAMILY SSF54593 1 125 5.1E-25 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_01940 476571929b02d6328b01fbe331881456 126 Gene3D G3DSA:3.10.180.10 1 126 4.1E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_01940 476571929b02d6328b01fbe331881456 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 124 4.4E-14 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 SUPERFAMILY SSF102114 20 287 7.85E-63 T 13-10-2018 RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 SMART SM00729 57 265 9.3E-16 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 PIRSF PIRSF005963 2 298 3.5E-135 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 293 2.2E-119 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 3 45 1.4E-11 T 13-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 Pfam PF04055 Radical SAM superfamily 64 224 4.4E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 Hamap MF_00206 Lipoyl synthase [lipA]. 1 295 148.472 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RA13_06325 6432f9bbc4a95c755167caf31c3ec2ae 298 Gene3D G3DSA:3.20.20.70 15 266 1.8E-21 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_08205 2fdf1272507677eb91ffe2eba6ee783c 310 SUPERFAMILY SSF52540 129 273 2.61E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08205 2fdf1272507677eb91ffe2eba6ee783c 310 SMART SM00382 159 283 1.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_08205 2fdf1272507677eb91ffe2eba6ee783c 310 Pfam PF01695 IstB-like ATP binding protein 144 273 3.9E-12 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 RA13_08205 2fdf1272507677eb91ffe2eba6ee783c 310 Pfam PF07319 Primosomal protein DnaI N-terminus 1 97 9.4E-33 T 13-10-2018 IPR009928 Primosomal DnaI, N-terminal RA13_08205 2fdf1272507677eb91ffe2eba6ee783c 310 Gene3D G3DSA:3.40.50.300 107 301 4.4E-54 T 13-10-2018 RA13_17380 eba4698ea40377835b565583b39afdf7 719 Gene3D G3DSA:1.10.486.10 469 617 6.2E-79 T 13-10-2018 RA13_17380 eba4698ea40377835b565583b39afdf7 719 Gene3D G3DSA:1.10.10.160 201 273 1.7E-84 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily RA13_17380 eba4698ea40377835b565583b39afdf7 719 Gene3D G3DSA:3.40.50.300 368 705 6.2E-79 T 13-10-2018 RA13_17380 eba4698ea40377835b565583b39afdf7 719 Pfam PF00580 UvrD/REP helicase N-terminal domain 95 358 4.9E-64 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RA13_17380 eba4698ea40377835b565583b39afdf7 719 SUPERFAMILY SSF52540 93 706 3.34E-136 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17380 eba4698ea40377835b565583b39afdf7 719 Gene3D G3DSA:3.40.50.300 95 360 1.7E-84 T 13-10-2018 RA13_17380 eba4698ea40377835b565583b39afdf7 719 Pfam PF13361 UvrD-like helicase C-terminal domain 364 504 5.1E-18 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RA13_17380 eba4698ea40377835b565583b39afdf7 719 Pfam PF13361 UvrD-like helicase C-terminal domain 613 690 7.7E-24 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RA13_02780 dd4e8cec107219c0978e9ad83052baba 358 Pfam PF13354 Beta-lactamase enzyme family 56 170 4.3E-12 T 13-10-2018 RA13_02780 dd4e8cec107219c0978e9ad83052baba 358 SUPERFAMILY SSF56601 37 329 1.75E-14 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_02780 dd4e8cec107219c0978e9ad83052baba 358 Gene3D G3DSA:3.40.710.10 36 346 4.6E-25 T 13-10-2018 RA13_11170 f964601519ff2aea5331a33163e253ef 390 SMART SM00835 234 375 7.1E-27 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_11170 f964601519ff2aea5331a33163e253ef 390 SMART SM00835 56 198 4.1E-18 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_11170 f964601519ff2aea5331a33163e253ef 390 SUPERFAMILY SSF51182 16 381 3.6E-97 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_11170 f964601519ff2aea5331a33163e253ef 390 Gene3D G3DSA:2.60.120.10 14 379 1.3E-167 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_11170 f964601519ff2aea5331a33163e253ef 390 Gene3D G3DSA:2.60.120.10 62 235 1.3E-167 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_11170 f964601519ff2aea5331a33163e253ef 390 TIGRFAM TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family 20 385 1.5E-175 T 13-10-2018 IPR017774 Bicupin, oxalate decarboxylase/oxidase GO:0033609 KEGG: 00630+4.1.1.2|MetaCyc: PWY-6698 RA13_11170 f964601519ff2aea5331a33163e253ef 390 Pfam PF00190 Cupin 67 192 1.2E-21 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_11170 f964601519ff2aea5331a33163e253ef 390 Pfam PF00190 Cupin 235 369 2.8E-21 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 RA13_05310 833e018078a188b3f58d498a2d95500c 379 Pfam PF13477 Glycosyl transferase 4-like 5 146 7.4E-15 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RA13_05310 833e018078a188b3f58d498a2d95500c 379 Gene3D G3DSA:3.40.50.2000 171 355 3.4E-79 T 13-10-2018 RA13_05310 833e018078a188b3f58d498a2d95500c 379 Pfam PF00534 Glycosyl transferases group 1 184 350 4.2E-44 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_05310 833e018078a188b3f58d498a2d95500c 379 Gene3D G3DSA:3.40.50.2000 26 368 3.4E-79 T 13-10-2018 RA13_05310 833e018078a188b3f58d498a2d95500c 379 SUPERFAMILY SSF53756 20 368 6.28E-76 T 13-10-2018 RA13_09665 5c2180198151c26b4f97c0c72f3ae6ef 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 122 132 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site RA13_09665 5c2180198151c26b4f97c0c72f3ae6ef 157 Pfam PF02130 Uncharacterized protein family UPF0054 15 151 4.0E-48 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RA13_09665 5c2180198151c26b4f97c0c72f3ae6ef 157 Gene3D G3DSA:3.40.390.30 2 157 3.2E-47 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 RA13_09665 5c2180198151c26b4f97c0c72f3ae6ef 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 156 24.176 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RA13_09665 5c2180198151c26b4f97c0c72f3ae6ef 157 SUPERFAMILY SSF55486 2 156 1.61E-45 T 13-10-2018 RA13_09665 5c2180198151c26b4f97c0c72f3ae6ef 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 153 1.7E-41 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RA13_19815 db45bd9a398119d1cd0eae74231976b5 231 Gene3D G3DSA:3.30.240.20 80 155 4.4E-24 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_19815 db45bd9a398119d1cd0eae74231976b5 231 Pfam PF04239 Protein of unknown function (DUF421) 88 204 3.8E-33 T 13-10-2018 IPR007353 Protein of unknown function DUF421 RA13_19815 db45bd9a398119d1cd0eae74231976b5 231 Gene3D G3DSA:3.30.240.20 169 228 2.7E-19 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_05875 3c5ae7a77051062cbef403b8bb6bccb4 193 Pfam PF01923 Cobalamin adenosyltransferase 4 166 4.1E-57 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RA13_05875 3c5ae7a77051062cbef403b8bb6bccb4 193 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 180 4.0E-76 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RA13_05875 3c5ae7a77051062cbef403b8bb6bccb4 193 Gene3D G3DSA:1.20.1200.10 22 193 3.1E-65 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RA13_05875 3c5ae7a77051062cbef403b8bb6bccb4 193 SUPERFAMILY SSF89028 2 179 3.73E-65 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RA13_05875 3c5ae7a77051062cbef403b8bb6bccb4 193 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 179 8.7E-66 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RA13_15980 96442a75542d9900b3608286b06b33ac 539 Pfam PF00005 ABC transporter 335 468 1.5E-13 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_15980 96442a75542d9900b3608286b06b33ac 539 Gene3D G3DSA:3.40.50.300 1 280 6.2E-58 T 13-10-2018 RA13_15980 96442a75542d9900b3608286b06b33ac 539 Pfam PF00005 ABC transporter 18 184 1.5E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_15980 96442a75542d9900b3608286b06b33ac 539 SUPERFAMILY SSF52540 296 515 1.86E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15980 96442a75542d9900b3608286b06b33ac 539 Gene3D G3DSA:3.40.50.300 283 538 3.1E-41 T 13-10-2018 RA13_15980 96442a75542d9900b3608286b06b33ac 539 SMART SM00382 26 228 6.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_15980 96442a75542d9900b3608286b06b33ac 539 SMART SM00382 344 513 0.61 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_15980 96442a75542d9900b3608286b06b33ac 539 SUPERFAMILY SSF52540 6 237 6.32E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15980 96442a75542d9900b3608286b06b33ac 539 Pfam PF12848 ABC transporter 224 309 1.2E-19 T 13-10-2018 IPR032781 ABC-transporter extension domain RA13_09780 6bab6d40bf0798efec685a0e313bf555 193 Gene3D G3DSA:3.40.50.1000 1 165 6.4E-13 T 13-10-2018 IPR023214 HAD superfamily RA13_09780 6bab6d40bf0798efec685a0e313bf555 193 PIRSF PIRSF021362 1 191 2.9E-85 T 13-10-2018 IPR009206 Nucleotidase, putative RA13_09780 6bab6d40bf0798efec685a0e313bf555 193 SUPERFAMILY SSF56784 4 162 1.01E-19 T 13-10-2018 IPR036412 HAD-like superfamily RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 Gene3D G3DSA:2.160.20.10 367 504 1.8E-8 T 13-10-2018 IPR012334 Pectin lyase fold RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 Pfam PF12708 Pectate lyase superfamily protein 7 271 8.6E-13 T 13-10-2018 IPR024535 Pectate lyase superfamily protein RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SUPERFAMILY SSF51126 3 278 1.32E-32 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 311 331 830.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 332 354 510.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 236 266 1200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 196 225 570.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 100 138 2800.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 383 403 6500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 355 382 2500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 404 425 270.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 500 526 3200.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 173 195 4.3 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 139 161 14.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 454 476 700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SMART SM00710 527 552 350.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 SUPERFAMILY SSF51126 310 487 6.04E-15 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 Gene3D G3DSA:2.160.20.10 5 338 4.4E-39 T 13-10-2018 IPR012334 Pectin lyase fold RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 Pfam PF13229 Right handed beta helix region 446 564 1.2E-5 T 13-10-2018 IPR039448 Right handed beta helix domain RA13_21605 5e716d1be711b16adf1657b3fb26b3db 582 Pfam PF13229 Right handed beta helix region 302 434 5.3E-14 T 13-10-2018 IPR039448 Right handed beta helix domain RA13_08180 fd210ca3daf58be8a4560121aceda56a 126 SUPERFAMILY SSF46785 3 109 3.47E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_08180 fd210ca3daf58be8a4560121aceda56a 126 Gene3D G3DSA:1.10.10.10 1 123 3.2E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08180 fd210ca3daf58be8a4560121aceda56a 126 Pfam PF01638 HxlR-like helix-turn-helix 16 104 1.2E-39 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RA13_15185 5ff84c48344ab88a4b79e9c54032414e 81 SUPERFAMILY SSF54814 20 63 2.22E-6 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RA13_15185 5ff84c48344ab88a4b79e9c54032414e 81 Hamap MF_00088 UPF0109 protein . 6 80 22.282 T 13-10-2018 IPR020627 Uncharacterised protein family UPF0109 RA13_15185 5ff84c48344ab88a4b79e9c54032414e 81 Pfam PF13083 KH domain 7 79 1.4E-22 T 13-10-2018 RA13_15185 5ff84c48344ab88a4b79e9c54032414e 81 Gene3D G3DSA:3.30.300.20 6 67 2.0E-5 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_12075 e8263625af481dee3aaf1ad179f74fc9 203 TIGRFAM TIGR01603 maj_tail_phi13: phage major tail protein, phi13 family 4 184 7.2E-34 T 13-10-2018 IPR006490 Phage major tail protein, phi13 family RA13_14360 7e9f82836453499b9d889858a8ccc0d6 103 Pfam PF01391 Collagen triple helix repeat (20 copies) 33 76 2.2E-9 T 13-10-2018 IPR008160 Collagen triple helix repeat RA13_09445 edee93ad53e66ac39451ae5a9ce0a114 245 Gene3D G3DSA:3.20.20.370 29 243 3.3E-72 T 13-10-2018 RA13_09445 edee93ad53e66ac39451ae5a9ce0a114 245 Pfam PF01522 Polysaccharide deacetylase 44 164 1.5E-31 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_09445 edee93ad53e66ac39451ae5a9ce0a114 245 SUPERFAMILY SSF88713 33 236 6.45E-63 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_16855 b99924c1b26a805ac34cae5d54c6d8fb 248 ProDom PD120066 SPORULATION STAGE SA II SPOIISA TRANSMEMBRANE MEMBRANE KILLER 1 247 7.0E-125 T 13-10-2018 RA13_16855 b99924c1b26a805ac34cae5d54c6d8fb 248 Gene3D G3DSA:1.20.5.460 92 127 1.8E-21 T 13-10-2018 RA13_16855 b99924c1b26a805ac34cae5d54c6d8fb 248 Pfam PF14171 Toxin SpoIISA, type II toxin-antitoxin system 3 238 6.5E-94 T 13-10-2018 IPR025940 Toxin SpoIISA, type II toxin-antitoxin system GO:0009405|GO:0016021 RA13_16855 b99924c1b26a805ac34cae5d54c6d8fb 248 Gene3D G3DSA:3.30.70.2720 128 248 3.9E-46 T 13-10-2018 RA13_02040 6a442d8acc2052a158838246bb66903d 164 Gene3D G3DSA:3.40.630.30 1 161 5.9E-28 T 13-10-2018 RA13_02040 6a442d8acc2052a158838246bb66903d 164 Pfam PF13302 Acetyltransferase (GNAT) domain 51 151 1.9E-19 T 13-10-2018 IPR000182 GNAT domain RA13_02040 6a442d8acc2052a158838246bb66903d 164 SUPERFAMILY SSF55729 2 154 2.2E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_01130 620ef5a1eb1571a091befd61d2fa1cb5 59 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 5 57 1.7E-20 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_01130 620ef5a1eb1571a091befd61d2fa1cb5 59 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 6 34 - T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_01130 620ef5a1eb1571a091befd61d2fa1cb5 59 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 3 58 6.2E-24 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RA13_01130 620ef5a1eb1571a091befd61d2fa1cb5 59 Gene3D G3DSA:1.20.5.1030 1 58 1.5E-18 T 13-10-2018 IPR038379 SecE superfamily RA13_01130 620ef5a1eb1571a091befd61d2fa1cb5 59 Hamap MF_00422 Protein translocase subunit SecE [secE]. 1 56 12.738 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 SUPERFAMILY SSF51735 160 405 1.26E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 PRINTS PR00072 Malic enzyme signature 187 203 1.0E-8 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 PRINTS PR00072 Malic enzyme signature 156 172 1.0E-8 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 PRINTS PR00072 Malic enzyme signature 77 99 1.0E-8 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 SMART SM01274 15 148 4.4E-83 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 Pfam PF00390 Malic enzyme, N-terminal domain 16 148 2.4E-29 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 Gene3D G3DSA:3.40.50.10380 1 157 8.2E-75 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 ProSitePatterns PS00331 Malic enzymes signature. 156 172 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 Gene3D G3DSA:3.40.50.720 158 410 6.7E-89 T 13-10-2018 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 SMART SM00919 160 384 8.0E-134 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 Pfam PF03949 Malic enzyme, NAD binding domain 162 383 2.0E-25 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 SUPERFAMILY SSF53223 6 158 2.88E-56 T 13-10-2018 RA13_08085 95b12ebaba91a51a8f781433b3a1e488 410 PIRSF PIRSF000106 36 407 4.5E-85 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_11480 5a547e2261df3a0fd7de073887363073 85 ProDom PD062992 CYTOSOLIC YPZA BH2151 13 65 2.0E-17 T 13-10-2018 IPR020314 Uncharacterised protein family YpzA RA13_11480 5a547e2261df3a0fd7de073887363073 85 Pfam PF10819 Protein of unknown function (DUF2564) 9 85 2.9E-28 T 13-10-2018 IPR020314 Uncharacterised protein family YpzA RA13_04565 3bafbee0466fd661f882459f42478121 326 Gene3D G3DSA:3.40.50.2300 155 282 1.5E-66 T 13-10-2018 RA13_04565 3bafbee0466fd661f882459f42478121 326 SUPERFAMILY SSF47413 2 59 5.06E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_04565 3bafbee0466fd661f882459f42478121 326 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 RA13_04565 3bafbee0466fd661f882459f42478121 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.6E-23 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_04565 3bafbee0466fd661f882459f42478121 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.4E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_04565 3bafbee0466fd661f882459f42478121 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.4E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_04565 3bafbee0466fd661f882459f42478121 326 Gene3D G3DSA:3.40.50.2300 62 302 1.5E-66 T 13-10-2018 RA13_04565 3bafbee0466fd661f882459f42478121 326 Gene3D G3DSA:1.10.260.40 3 58 9.5E-25 T 13-10-2018 RA13_04565 3bafbee0466fd661f882459f42478121 326 Pfam PF13377 Periplasmic binding protein-like domain 175 322 8.7E-28 T 13-10-2018 RA13_04565 3bafbee0466fd661f882459f42478121 326 SMART SM00354 1 71 2.1E-39 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_04565 3bafbee0466fd661f882459f42478121 326 SUPERFAMILY SSF53822 60 323 2.75E-64 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_21425 89b6ce3402c970812dba84bc680add7b 206 Pfam PF07987 Domain of unkown function (DUF1775) 27 144 3.5E-18 T 13-10-2018 IPR012533 YcnI-like RA13_21425 89b6ce3402c970812dba84bc680add7b 206 Gene3D G3DSA:2.60.40.2230 24 169 1.4E-34 T 13-10-2018 IPR038507 YcnI-like superfamily RA13_09905 3f5ac977af717a18a9952b3ea55e0d52 376 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 108 120 3.3E-7 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RA13_09905 3f5ac977af717a18a9952b3ea55e0d52 376 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 226 234 3.3E-7 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RA13_09905 3f5ac977af717a18a9952b3ea55e0d52 376 PRINTS PR00765 Carboxypeptidase A metalloprotease (M14) family signature 129 143 3.3E-7 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RA13_09905 3f5ac977af717a18a9952b3ea55e0d52 376 Gene3D G3DSA:3.40.630.10 75 368 2.4E-43 T 13-10-2018 RA13_09905 3f5ac977af717a18a9952b3ea55e0d52 376 SMART SM00631 84 362 3.1E-31 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RA13_09905 3f5ac977af717a18a9952b3ea55e0d52 376 Pfam PF00246 Zinc carboxypeptidase 102 309 8.6E-26 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 RA13_09905 3f5ac977af717a18a9952b3ea55e0d52 376 SUPERFAMILY SSF53187 83 368 6.62E-51 T 13-10-2018 RA13_21400 2deadd440b7d2a1c2d94598abb292f84 143 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_21400 2deadd440b7d2a1c2d94598abb292f84 143 SUPERFAMILY SSF55804 2 141 1.57E-41 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_21400 2deadd440b7d2a1c2d94598abb292f84 143 Gene3D G3DSA:3.40.930.10 1 141 1.2E-45 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RA13_21400 2deadd440b7d2a1c2d94598abb292f84 143 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 3 141 1.6E-37 T 13-10-2018 IPR002178 PTS EIIA type-2 domain RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 PRINTS PR00944 Copper ion binding protein signature 15 28 2.7E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 PRINTS PR00944 Copper ion binding protein signature 54 67 2.7E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 PRINTS PR00944 Copper ion binding protein signature 28 41 2.7E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 PRINTS PR00944 Copper ion binding protein signature 3 15 2.7E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 SUPERFAMILY SSF55008 1 67 9.56E-21 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 Pfam PF00403 Heavy-metal-associated domain 5 66 5.1E-17 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 Gene3D G3DSA:3.30.70.100 1 68 8.6E-26 T 13-10-2018 RA13_05660 65fe7542bb49d9c91342fd66fcaddfcf 69 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 3 68 2.9E-31 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 RA13_18750 f25b5a58543f5b54fa876a004b3eefb0 303 Gene3D G3DSA:3.30.2350.10 83 300 5.7E-70 T 13-10-2018 RA13_18750 f25b5a58543f5b54fa876a004b3eefb0 303 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 15 297 5.3E-89 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_18750 f25b5a58543f5b54fa876a004b3eefb0 303 Pfam PF00849 RNA pseudouridylate synthase 91 244 7.6E-35 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_18750 f25b5a58543f5b54fa876a004b3eefb0 303 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_18750 f25b5a58543f5b54fa876a004b3eefb0 303 SUPERFAMILY SSF55120 75 297 2.4E-70 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_18750 f25b5a58543f5b54fa876a004b3eefb0 303 SMART SM00363 19 82 6.6E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 SUPERFAMILY SSF50331 238 367 1.34E-26 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 Gene3D G3DSA:2.40.50.100 241 367 9.4E-28 T 13-10-2018 RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 Pfam PF00005 ABC transporter 22 163 7.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 SUPERFAMILY SSF52540 4 244 5.46E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 Gene3D G3DSA:2.40.50.140 289 353 9.4E-28 T 13-10-2018 RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 SMART SM00382 30 213 2.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 Pfam PF08402 TOBE domain 287 360 2.5E-8 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 RA13_06155 c2fbb5c2fe4659babf094ee7a151a830 369 Gene3D G3DSA:3.40.50.300 1 240 1.3E-71 T 13-10-2018 RA13_19200 7307b3b8ca4cd6a2a9befe3baca094f7 263 Gene3D G3DSA:1.10.10.10 108 152 2.3E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19200 7307b3b8ca4cd6a2a9befe3baca094f7 263 Gene3D G3DSA:1.10.10.10 43 107 2.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19200 7307b3b8ca4cd6a2a9befe3baca094f7 263 Hamap MF_01114 Regulatory protein RecX [recX]. 42 209 17.544 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RA13_19200 7307b3b8ca4cd6a2a9befe3baca094f7 263 Gene3D G3DSA:1.10.10.10 154 216 3.8E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19200 7307b3b8ca4cd6a2a9befe3baca094f7 263 Gene3D G3DSA:1.10.10.10 217 263 9.7E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19200 7307b3b8ca4cd6a2a9befe3baca094f7 263 Pfam PF02631 RecX family 210 261 9.0E-6 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RA13_19200 7307b3b8ca4cd6a2a9befe3baca094f7 263 Pfam PF02631 RecX family 84 206 1.5E-27 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RA13_02295 127d3130b7df3000703d91e3ae5990f1 163 Pfam PF04002 RadC-like JAB domain 43 161 5.7E-43 T 13-10-2018 IPR025657 RadC-like JAB domain RA13_02295 127d3130b7df3000703d91e3ae5990f1 163 Gene3D G3DSA:3.40.140.10 39 163 6.5E-46 T 13-10-2018 RA13_02295 127d3130b7df3000703d91e3ae5990f1 163 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 112 117 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site RA13_02295 127d3130b7df3000703d91e3ae5990f1 163 TIGRFAM TIGR00608 radc: DNA repair protein RadC 38 163 4.9E-42 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 Pfam PF00199 Catalase 36 425 7.7E-173 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 SMART SM01060 36 429 6.7E-252 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 PIRSF PIRSF038928 24 519 2.7E-181 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 ProSitePatterns PS00438 Catalase proximal active site signature. 72 88 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 PRINTS PR00067 Catalase signature 49 72 8.5E-65 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 PRINTS PR00067 Catalase signature 322 349 8.5E-65 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 PRINTS PR00067 Catalase signature 138 155 8.5E-65 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 PRINTS PR00067 Catalase signature 157 175 8.5E-65 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 PRINTS PR00067 Catalase signature 117 135 8.5E-65 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 PRINTS PR00067 Catalase signature 354 380 8.5E-65 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 Pfam PF06628 Catalase-related immune-responsive 452 513 3.6E-20 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 367 375 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 SUPERFAMILY SSF56634 27 520 1.83E-197 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RA13_03180 956056ef84dd980ac659062414cdfe2e 547 Gene3D G3DSA:2.40.180.10 32 535 3.2E-224 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RA13_15275 2d29490de8af3fcb0e9e9256ed0517ba 26 Pfam PF08183 Stage V sporulation protein family 1 25 6.8E-18 T 13-10-2018 IPR012609 Sporulation stage V, protein M RA13_19400 c0568756709431df680b93f234316a85 466 Gene3D G3DSA:2.40.50.140 3 88 3.1E-25 T 13-10-2018 RA13_19400 c0568756709431df680b93f234316a85 466 Gene3D G3DSA:3.40.50.150 90 457 3.4E-113 T 13-10-2018 RA13_19400 c0568756709431df680b93f234316a85 466 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 445 455 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site RA13_19400 c0568756709431df680b93f234316a85 466 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 394 425 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site RA13_19400 c0568756709431df680b93f234316a85 466 Pfam PF01938 TRAM domain 13 67 4.5E-13 T 13-10-2018 IPR002792 TRAM domain RA13_19400 c0568756709431df680b93f234316a85 466 SUPERFAMILY SSF53335 77 459 1.09E-77 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_19400 c0568756709431df680b93f234316a85 466 Gene3D G3DSA:3.40.1350.30 139 295 3.4E-113 T 13-10-2018 RA13_19400 c0568756709431df680b93f234316a85 466 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 25 455 1.9E-205 T 13-10-2018 RA13_19400 c0568756709431df680b93f234316a85 466 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 218 457 3.1E-20 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RA13_19400 c0568756709431df680b93f234316a85 466 SUPERFAMILY SSF50249 5 68 5.65E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_08510 66791bd6c0ede631aa1dff59502f8c95 145 Gene3D G3DSA:3.10.129.10 9 145 2.0E-30 T 13-10-2018 RA13_08510 66791bd6c0ede631aa1dff59502f8c95 145 Pfam PF03061 Thioesterase superfamily 34 115 4.0E-11 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RA13_08510 66791bd6c0ede631aa1dff59502f8c95 145 SUPERFAMILY SSF54637 13 143 2.28E-31 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_18705 7d21c81032add04a2c430e3b6159b371 496 Gene3D G3DSA:3.30.420.40 253 496 6.0E-91 T 13-10-2018 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 449 4.9E-66 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 Hamap MF_00186 Glycerol kinase [glpK]. 2 496 59.814 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 SUPERFAMILY SSF53067 4 254 2.46E-98 T 13-10-2018 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 PIRSF PIRSF000538 2 495 2.7E-180 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 SUPERFAMILY SSF53067 254 493 2.43E-87 T 13-10-2018 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 251 1.3E-92 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 361 381 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 493 8.9E-227 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RA13_18705 7d21c81032add04a2c430e3b6159b371 496 Gene3D G3DSA:3.30.420.40 1 252 5.8E-113 T 13-10-2018 RA13_02160 9ab342d12a0b077088ecc84944449982 450 Gene3D G3DSA:3.10.450.310 208 413 1.1E-73 T 13-10-2018 RA13_02160 9ab342d12a0b077088ecc84944449982 450 Gene3D G3DSA:3.30.310.160 230 372 1.1E-73 T 13-10-2018 RA13_02160 9ab342d12a0b077088ecc84944449982 450 Pfam PF07435 YycH protein 4 448 3.0E-143 T 13-10-2018 IPR009996 Regulatory protein YycH RA13_10330 7fd7d205cafc132e7b9f10ba0c2a4aaf 300 SMART SM00046 5 132 1.2E-28 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RA13_10330 7fd7d205cafc132e7b9f10ba0c2a4aaf 300 Pfam PF00781 Diacylglycerol kinase catalytic domain 5 128 1.7E-32 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RA13_10330 7fd7d205cafc132e7b9f10ba0c2a4aaf 300 SUPERFAMILY SSF111331 3 296 4.58E-74 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RA13_10330 7fd7d205cafc132e7b9f10ba0c2a4aaf 300 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 4 295 4.0E-114 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase RA13_10330 7fd7d205cafc132e7b9f10ba0c2a4aaf 300 Gene3D G3DSA:3.40.50.10330 7 125 2.7E-84 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RA13_10330 7fd7d205cafc132e7b9f10ba0c2a4aaf 300 Gene3D G3DSA:2.60.200.40 126 279 2.7E-84 T 13-10-2018 RA13_10805 55bb30e95627e6f667ee54a2eb26f72c 31 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 7 30 6.1E-15 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_10805 55bb30e95627e6f667ee54a2eb26f72c 31 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 7 30 2.9E-12 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 Gene3D G3DSA:1.10.357.10 50 194 9.7E-42 T 13-10-2018 RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 SUPERFAMILY SSF48498 78 188 5.24E-30 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.2E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.2E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 SUPERFAMILY SSF46689 6 72 2.72E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 Pfam PF08359 YsiA-like protein, C-terminal region 58 189 3.0E-62 T 13-10-2018 IPR013570 Transcription regulator YsiA, C-terminal RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 Gene3D G3DSA:1.10.10.60 1 49 1.5E-24 T 13-10-2018 RA13_08450 390f349239b2ce0b1e2dd39bcb88ee8a 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 5.7E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_05420 74d8787689ebe641f2c5705c263827ea 306 Pfam PF00892 EamA-like transporter family 11 140 2.4E-24 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_05420 74d8787689ebe641f2c5705c263827ea 306 Pfam PF00892 EamA-like transporter family 151 286 7.9E-24 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_05420 74d8787689ebe641f2c5705c263827ea 306 SUPERFAMILY SSF103481 43 143 6.54E-15 T 13-10-2018 RA13_05420 74d8787689ebe641f2c5705c263827ea 306 SUPERFAMILY SSF103481 187 289 1.44E-10 T 13-10-2018 RA13_10960 b1d84a1390f6d483e69f49554fd37e37 218 Gene3D G3DSA:2.40.10.220 95 210 1.6E-10 T 13-10-2018 RA13_10960 b1d84a1390f6d483e69f49554fd37e37 218 Pfam PF07238 PilZ domain 98 206 7.7E-9 T 13-10-2018 IPR009875 PilZ domain GO:0035438 RA13_10960 b1d84a1390f6d483e69f49554fd37e37 218 Pfam PF12945 Flagellar protein YcgR 4 89 4.9E-18 T 13-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal RA13_10960 b1d84a1390f6d483e69f49554fd37e37 218 SUPERFAMILY SSF141371 98 167 1.41E-6 T 13-10-2018 RA13_16785 04068a3c705141e5c6ef72fdb9df5956 541 Gene3D G3DSA:3.40.190.10 53 528 2.5E-170 T 13-10-2018 RA13_16785 04068a3c705141e5c6ef72fdb9df5956 541 Gene3D G3DSA:3.10.105.10 296 514 2.5E-170 T 13-10-2018 RA13_16785 04068a3c705141e5c6ef72fdb9df5956 541 Gene3D G3DSA:3.90.76.10 74 196 2.5E-170 T 13-10-2018 RA13_16785 04068a3c705141e5c6ef72fdb9df5956 541 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 90 112 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site RA13_16785 04068a3c705141e5c6ef72fdb9df5956 541 SUPERFAMILY SSF53850 39 535 1.17E-134 T 13-10-2018 RA13_16785 04068a3c705141e5c6ef72fdb9df5956 541 PIRSF PIRSF002741 1 540 2.1E-121 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RA13_16785 04068a3c705141e5c6ef72fdb9df5956 541 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 464 3.3E-85 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RA13_00405 657e2614c5a06cbfdad67c5bc88f9859 351 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 332 1.7E-48 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RA13_00405 657e2614c5a06cbfdad67c5bc88f9859 351 SUPERFAMILY SSF56796 10 348 2.88E-58 T 13-10-2018 RA13_00405 657e2614c5a06cbfdad67c5bc88f9859 351 Gene3D G3DSA:1.20.1090.10 155 351 1.7E-56 T 13-10-2018 RA13_00405 657e2614c5a06cbfdad67c5bc88f9859 351 PIRSF PIRSF000112 1 351 1.0E-118 T 13-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 RA13_00405 657e2614c5a06cbfdad67c5bc88f9859 351 Gene3D G3DSA:3.40.50.1970 8 152 1.5E-25 T 13-10-2018 RA13_03325 cc065ac308643eaf3905109c2b4b05df 65 Pfam PF09962 Uncharacterized conserved protein (DUF2196) 2 62 9.6E-33 T 13-10-2018 IPR019240 Protein of unknown function DUF2196 RA13_03325 cc065ac308643eaf3905109c2b4b05df 65 TIGRFAM TIGR03833 TIGR03833: conserved hypothetical protein 2 62 3.0E-35 T 13-10-2018 IPR019240 Protein of unknown function DUF2196 RA13_01860 560c18c1044582580ce44c0a4b836509 279 Gene3D G3DSA:3.90.1530.30 34 96 4.5E-28 T 13-10-2018 RA13_01860 560c18c1044582580ce44c0a4b836509 279 SUPERFAMILY SSF109709 103 213 5.75E-35 T 13-10-2018 RA13_01860 560c18c1044582580ce44c0a4b836509 279 SMART SM00470 21 110 2.6E-38 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RA13_01860 560c18c1044582580ce44c0a4b836509 279 SUPERFAMILY SSF110849 21 112 1.12E-27 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RA13_01860 560c18c1044582580ce44c0a4b836509 279 Pfam PF02195 ParB-like nuclease domain 21 109 1.3E-26 T 13-10-2018 IPR003115 ParB/Sulfiredoxin RA13_01860 560c18c1044582580ce44c0a4b836509 279 Gene3D G3DSA:1.10.10.2830 97 211 1.2E-36 T 13-10-2018 RA13_01860 560c18c1044582580ce44c0a4b836509 279 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 17 196 1.4E-68 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RA13_05785 0fced3086e24cd4be3986748ceefcd88 353 Pfam PF01032 FecCD transport family 38 348 3.0E-88 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_05785 0fced3086e24cd4be3986748ceefcd88 353 Gene3D G3DSA:1.10.3470.10 26 352 8.5E-92 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_05785 0fced3086e24cd4be3986748ceefcd88 353 SUPERFAMILY SSF81345 25 348 1.06E-82 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_21145 edad1f4758b84b0103a02ca709601c21 354 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 49 304 1.1E-101 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 RA13_21145 edad1f4758b84b0103a02ca709601c21 354 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 49 332 1.9E-101 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 RA13_21145 edad1f4758b84b0103a02ca709601c21 354 PIRSF PIRSF006470 17 349 4.1E-131 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 RA13_21145 edad1f4758b84b0103a02ca709601c21 354 Gene3D G3DSA:3.40.190.170 44 346 7.3E-96 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily RA13_07440 029716355aedb0c273a5fa32852400bc 80 SUPERFAMILY SSF88697 1 80 6.46E-32 T 13-10-2018 IPR015947 PUA-like superfamily RA13_07440 029716355aedb0c273a5fa32852400bc 80 Pfam PF10763 Protein of unknown function (DUF2584) 1 80 3.3E-38 T 13-10-2018 IPR019699 Protein of unknown function DUF2584 RA13_07440 029716355aedb0c273a5fa32852400bc 80 Gene3D G3DSA:2.40.240.20 1 77 1.1E-37 T 13-10-2018 RA13_05275 d520da15ba83fcf2f90d06310765466e 189 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 2.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05275 d520da15ba83fcf2f90d06310765466e 189 PRINTS PR00598 Bacterial regulatory protein MarR family signature 123 143 2.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05275 d520da15ba83fcf2f90d06310765466e 189 PRINTS PR00598 Bacterial regulatory protein MarR family signature 57 73 2.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05275 d520da15ba83fcf2f90d06310765466e 189 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 2.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05275 d520da15ba83fcf2f90d06310765466e 189 Gene3D G3DSA:1.10.10.10 1 189 1.5E-47 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05275 d520da15ba83fcf2f90d06310765466e 189 Pfam PF12802 MarR family 38 97 3.0E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05275 d520da15ba83fcf2f90d06310765466e 189 SMART SM00347 31 133 2.8E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05275 d520da15ba83fcf2f90d06310765466e 189 SUPERFAMILY SSF46785 12 147 1.47E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_18425 eb5b76512ab2927f946643b89f481267 377 PIRSF PIRSF032178 1 377 1.1E-137 T 13-10-2018 IPR016991 Protein of unknown function UCP032178 RA13_18425 eb5b76512ab2927f946643b89f481267 377 Pfam PF04286 Protein of unknown function (DUF445) 12 376 7.3E-83 T 13-10-2018 IPR007383 Protein of unknown function DUF445 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 PIRSF PIRSF000429 1 391 2.9E-130 T 13-10-2018 IPR002155 Thiolase GO:0016747 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 Gene3D G3DSA:3.40.47.10 131 387 4.6E-149 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 Pfam PF02803 Thiolase, C-terminal domain 269 389 4.8E-48 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 SUPERFAMILY SSF53901 270 390 9.15E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 SUPERFAMILY SSF53901 1 265 1.57E-75 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 Pfam PF00108 Thiolase, N-terminal domain 5 260 4.9E-77 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 Gene3D G3DSA:3.40.47.10 5 274 4.6E-149 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_06030 3d5d5b082e3f06dd19c06c1b422e1022 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 8.9E-141 T 13-10-2018 IPR002155 Thiolase GO:0016747 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 SUPERFAMILY SSF55681 117 422 1.26E-105 T 13-10-2018 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 PIRSF PIRSF001529 1 425 6.8E-191 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 SUPERFAMILY SSF46589 1 113 5.75E-32 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 2.0E-32 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 2.0E-32 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 2.0E-32 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 2.0E-32 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 2.0E-32 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 Gene3D G3DSA:1.10.287.40 1 105 1.7E-26 T 13-10-2018 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 220 400 5.4E-39 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 4.2E-188 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 Gene3D G3DSA:3.30.930.10 106 425 1.9E-128 T 13-10-2018 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 44.35 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RA13_01685 dee3293936ed129e7e20fd9d81aa3b8b 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 1.2E-32 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 RA13_03725 6e6cf3a6e6c4bac04f268349f30347f6 215 SUPERFAMILY SSF52540 4 210 1.81E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03725 6e6cf3a6e6c4bac04f268349f30347f6 215 Pfam PF00005 ABC transporter 20 160 3.7E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_03725 6e6cf3a6e6c4bac04f268349f30347f6 215 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_03725 6e6cf3a6e6c4bac04f268349f30347f6 215 SMART SM00382 29 209 3.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_03725 6e6cf3a6e6c4bac04f268349f30347f6 215 Gene3D G3DSA:3.40.50.300 2 215 3.2E-52 T 13-10-2018 RA13_17825 7e10e86a7e609a4b74cded80080eb74b 252 Pfam PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) 11 248 4.9E-78 T 13-10-2018 IPR003830 (2R)-phospho-3-sulpholactate synthase, ComA KEGG: 00680+4.4.1.19 RA13_17825 7e10e86a7e609a4b74cded80080eb74b 252 SUPERFAMILY SSF102110 5 250 1.44E-82 T 13-10-2018 IPR036112 (2R)-phospho-3-sulpholactate synthase, ComA superfamily KEGG: 00680+4.4.1.19 RA13_17825 7e10e86a7e609a4b74cded80080eb74b 252 Gene3D G3DSA:3.20.20.70 3 252 1.1E-95 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 SUPERFAMILY SSF81653 137 234 2.35E-27 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 Gene3D G3DSA:3.40.50.1000 316 584 3.1E-86 T 13-10-2018 IPR023214 HAD superfamily RA13_16275 d4c977263c2d6778c614e88e207c962d 638 SUPERFAMILY SSF81665 86 611 1.96E-16 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 Pfam PF00122 E1-E2 ATPase 134 313 3.3E-49 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 556 568 1.2E-31 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 335 349 1.2E-31 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 458 469 1.2E-31 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 533 552 1.2E-31 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 184 198 1.2E-31 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 480 490 1.2E-31 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 Gene3D G3DSA:3.40.1110.10 346 465 3.1E-86 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 107 609 1.9E-83 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 84 394 1.1E-94 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 337 343 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 Gene3D G3DSA:2.70.150.20 128 239 5.5E-36 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 SUPERFAMILY SSF56784 333 632 7.81E-56 T 13-10-2018 IPR036412 HAD-like superfamily RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00941 Cadmium-transporting ATPase signature 200 216 1.8E-13 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00941 Cadmium-transporting ATPase signature 47 64 1.8E-13 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00941 Cadmium-transporting ATPase signature 119 139 1.8E-13 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00941 Cadmium-transporting ATPase signature 219 233 1.8E-13 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 PRINTS PR00941 Cadmium-transporting ATPase signature 64 76 1.8E-13 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 Pfam PF00702 haloacid dehalogenase-like hydrolase 332 547 9.7E-40 T 13-10-2018 RA13_16275 d4c977263c2d6778c614e88e207c962d 638 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 84 635 8.0E-185 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RA13_19355 c402d0969c3e5b9784c4cb820b0266f6 108 SUPERFAMILY SSF103481 7 106 2.62E-9 T 13-10-2018 RA13_19355 c402d0969c3e5b9784c4cb820b0266f6 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 107 21.743 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RA13_19355 c402d0969c3e5b9784c4cb820b0266f6 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 108 4.2E-46 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RA13_00295 a5baf9e5b83839f562829441a5e8c498 327 TIGRFAM TIGR03814 Gln_ase: glutaminase A 18 327 2.0E-121 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RA13_00295 a5baf9e5b83839f562829441a5e8c498 327 Pfam PF04960 Glutaminase 32 327 4.5E-107 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RA13_00295 a5baf9e5b83839f562829441a5e8c498 327 SUPERFAMILY SSF56601 3 327 2.57E-123 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_00295 a5baf9e5b83839f562829441a5e8c498 327 Gene3D G3DSA:3.40.710.10 43 327 5.1E-130 T 13-10-2018 RA13_00295 a5baf9e5b83839f562829441a5e8c498 327 Gene3D G3DSA:1.10.1500.10 71 208 5.1E-130 T 13-10-2018 RA13_00295 a5baf9e5b83839f562829441a5e8c498 327 Hamap MF_00313 Glutaminase [glsA]. 14 327 44.483 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RA13_04525 566e0f1bb17e3fb14c733f8012a2b7ac 175 Gene3D G3DSA:3.40.50.360 1 174 9.7E-58 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_04525 566e0f1bb17e3fb14c733f8012a2b7ac 175 SUPERFAMILY SSF52218 1 174 1.82E-48 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_04525 566e0f1bb17e3fb14c733f8012a2b7ac 175 Pfam PF02525 Flavodoxin-like fold 1 166 2.3E-47 T 13-10-2018 IPR003680 Flavodoxin-like fold RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 11 300 8.3E-109 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 SUPERFAMILY SSF55174 15 101 5.72E-16 T 13-10-2018 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 Gene3D G3DSA:3.10.290.10 3 70 4.9E-19 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 SUPERFAMILY SSF55120 73 300 7.67E-81 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 Pfam PF00849 RNA pseudouridylate synthase 88 241 8.2E-37 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 SMART SM00363 15 72 1.7E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 Gene3D G3DSA:3.30.2350.10 81 303 2.2E-77 T 13-10-2018 RA13_15450 a8f86cb2cf897e13e698579d1bef0c73 303 Pfam PF01479 S4 domain 15 61 1.4E-13 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_09830 fd357f2f64280bf01a9cb2744f1f88c3 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 307 1.1E-32 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_09830 fd357f2f64280bf01a9cb2744f1f88c3 309 Gene3D G3DSA:1.10.3720.10 81 308 3.9E-37 T 13-10-2018 IPR035906 MetI-like superfamily RA13_09830 fd357f2f64280bf01a9cb2744f1f88c3 309 SUPERFAMILY SSF161098 31 303 2.35E-38 T 13-10-2018 IPR035906 MetI-like superfamily RA13_09830 fd357f2f64280bf01a9cb2744f1f88c3 309 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 29 307 3.1E-89 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 PIRSF PIRSF016578 4 376 5.9E-20 T 13-10-2018 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 5.5E-27 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.0E-52 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 Gene3D G3DSA:1.10.540.10 1 117 3.3E-42 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 Gene3D G3DSA:1.20.140.10 233 377 1.6E-56 T 13-10-2018 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 Gene3D G3DSA:2.40.110.10 119 232 3.9E-45 T 13-10-2018 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 SUPERFAMILY SSF56645 2 238 3.8E-88 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 1.8E-37 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RA13_10260 1789a735279f64658c2ace2cd9eda236 377 SUPERFAMILY SSF47203 225 376 5.8E-60 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 241 253 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 SMART SM01004 3 322 1.2E-237 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 SUPERFAMILY SSF51569 3 323 2.32E-143 T 13-10-2018 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 121 135 1.6E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 151 170 1.6E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 241 257 1.6E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 189 208 1.6E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 296 315 1.6E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 266 281 1.6E-58 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 PIRSF PIRSF001415 1 324 4.1E-155 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 321 6.1E-152 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RA13_08665 a8bc19b81328c3fa9f9caf9384106d38 324 Gene3D G3DSA:3.20.20.70 1 323 1.1E-151 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_06790 25147a929c6be4d3747d2279721685dc 387 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RA13_06790 25147a929c6be4d3747d2279721685dc 387 SUPERFAMILY SSF53383 5 385 4.52E-123 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_06790 25147a929c6be4d3747d2279721685dc 387 Pfam PF00155 Aminotransferase class I and II 30 378 5.7E-72 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_06790 25147a929c6be4d3747d2279721685dc 387 Gene3D G3DSA:3.90.1150.10 30 378 9.7E-133 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_06790 25147a929c6be4d3747d2279721685dc 387 Gene3D G3DSA:3.40.640.10 61 282 9.7E-133 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_11330 18c828bfdf51d3f592e348fa6599807b 413 Pfam PF13482 RNase_H superfamily 105 273 7.6E-38 T 13-10-2018 IPR038720 YprB, ribonuclease H-like domain RA13_11330 18c828bfdf51d3f592e348fa6599807b 413 SUPERFAMILY SSF53098 104 277 2.92E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_13785 73227cc2685a3943393429ede3860a40 505 Gene3D G3DSA:1.10.860.10 2 149 1.0E-10 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RA13_13785 73227cc2685a3943393429ede3860a40 505 SUPERFAMILY SSF52540 209 469 1.0E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_13785 73227cc2685a3943393429ede3860a40 505 Gene3D G3DSA:3.40.50.300 180 484 1.4E-33 T 13-10-2018 RA13_13785 73227cc2685a3943393429ede3860a40 505 SUPERFAMILY SSF48024 3 115 2.48E-12 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RA13_13785 73227cc2685a3943393429ede3860a40 505 Pfam PF00772 DnaB-like helicase N terminal domain 10 106 1.3E-6 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RA13_13785 73227cc2685a3943393429ede3860a40 505 Pfam PF03796 DnaB-like helicase C terminal domain 256 470 3.3E-13 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Gene3D G3DSA:3.10.350.10 78 150 5.4E-19 T 13-10-2018 IPR036779 LysM domain superfamily RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Gene3D G3DSA:3.10.350.10 209 281 2.1E-17 T 13-10-2018 IPR036779 LysM domain superfamily RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Gene3D G3DSA:3.10.350.10 17 77 2.1E-15 T 13-10-2018 IPR036779 LysM domain superfamily RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Pfam PF00877 NlpC/P60 family 366 466 4.3E-28 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SUPERFAMILY SSF54106 90 132 3.01E-11 T 13-10-2018 RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Gene3D G3DSA:3.90.1720.10 346 469 2.1E-36 T 13-10-2018 RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SUPERFAMILY SSF54001 350 468 2.6E-36 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SUPERFAMILY SSF54106 158 200 4.05E-10 T 13-10-2018 RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SUPERFAMILY SSF54106 224 267 7.46E-12 T 13-10-2018 RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Pfam PF01476 LysM domain 30 71 3.2E-14 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Pfam PF01476 LysM domain 290 331 2.5E-15 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Pfam PF01476 LysM domain 226 267 2.7E-15 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Pfam PF01476 LysM domain 91 132 6.3E-15 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Pfam PF01476 LysM domain 159 201 4.3E-13 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SUPERFAMILY SSF54106 288 331 1.57E-12 T 13-10-2018 RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SUPERFAMILY SSF54106 27 71 9.42E-10 T 13-10-2018 RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Gene3D G3DSA:3.10.350.10 284 337 7.5E-19 T 13-10-2018 IPR036779 LysM domain superfamily RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 Gene3D G3DSA:3.10.350.10 154 208 2.3E-16 T 13-10-2018 IPR036779 LysM domain superfamily RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SMART SM00257 225 268 2.3E-17 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SMART SM00257 289 332 1.1E-17 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SMART SM00257 158 201 5.9E-15 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SMART SM00257 28 71 1.4E-16 T 13-10-2018 IPR018392 LysM domain RA13_18665 625ee8b2771b0aca84883ceb5ef74a6d 469 SMART SM00257 90 133 2.8E-17 T 13-10-2018 IPR018392 LysM domain RA13_00085 9d6778b9a35e0b6e2bce2f16d4c13c2d 331 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 328 3.9E-118 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 RA13_00085 9d6778b9a35e0b6e2bce2f16d4c13c2d 331 Pfam PF00296 Luciferase-like monooxygenase 17 300 2.5E-30 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RA13_00085 9d6778b9a35e0b6e2bce2f16d4c13c2d 331 SUPERFAMILY SSF51679 2 328 1.53E-70 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_00085 9d6778b9a35e0b6e2bce2f16d4c13c2d 331 Gene3D G3DSA:3.20.20.30 1 330 6.2E-95 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RA13_11135 21dfaf5de74546c1c37fc228bbe2fb08 179 SMART SM00914 139 175 3.6E-14 T 13-10-2018 IPR014957 IDEAL domain RA13_11135 21dfaf5de74546c1c37fc228bbe2fb08 179 Pfam PF08858 IDEAL domain 139 175 1.7E-14 T 13-10-2018 IPR014957 IDEAL domain RA13_11135 21dfaf5de74546c1c37fc228bbe2fb08 179 Gene3D G3DSA:4.10.810.10 124 179 8.4E-21 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 RA13_11135 21dfaf5de74546c1c37fc228bbe2fb08 179 Hamap MF_00760 UPF0302 protein . 2 178 33.301 T 13-10-2018 IPR011188 Uncharacterised protein family UPF0302 RA13_11135 21dfaf5de74546c1c37fc228bbe2fb08 179 PIRSF PIRSF007165 1 179 2.1E-83 T 13-10-2018 IPR011188 Uncharacterised protein family UPF0302 RA13_11135 21dfaf5de74546c1c37fc228bbe2fb08 179 Gene3D G3DSA:1.20.1440.290 1 123 3.1E-55 T 13-10-2018 IPR038091 UPF0302, N-terminal domain superfamily RA13_11135 21dfaf5de74546c1c37fc228bbe2fb08 179 Pfam PF08864 UPF0302 domain 9 112 7.1E-47 T 13-10-2018 IPR014963 Uncharacterised domain UPF0302, N-terminal RA13_15955 22861de40f54e95f45034d6ed12fc4b3 92 SMART SM00966 8 51 1.3E-7 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_15955 22861de40f54e95f45034d6ed12fc4b3 92 SUPERFAMILY SSF89447 1 52 3.53E-15 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily RA13_15955 22861de40f54e95f45034d6ed12fc4b3 92 Gene3D G3DSA:2.10.260.10 1 54 1.8E-22 T 13-10-2018 RA13_15955 22861de40f54e95f45034d6ed12fc4b3 92 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 50 2.3E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 Gene3D G3DSA:1.10.150.20 237 314 1.5E-34 T 13-10-2018 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 SUPERFAMILY SSF55257 5 230 8.04E-31 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 SMART SM00662 20 227 1.5E-101 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 SUPERFAMILY SSF56553 50 171 1.44E-43 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 240 305 1.9E-29 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 313 37.075 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 Gene3D G3DSA:3.30.1360.10 17 221 7.5E-87 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 253 310 1.0E-25 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 SUPERFAMILY SSF47789 247 313 7.85E-25 T 13-10-2018 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 Gene3D G3DSA:2.170.120.12 50 170 7.5E-87 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 221 6.6E-23 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 59 152 7.7E-24 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_00910 dd612fa40285a3f5dec941215a99e37c 314 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 21 313 9.8E-125 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06495 289e868400edaae94ba246d09622962d 261 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 11 260 6.6E-120 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 15 32 5.6E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 237 256 5.6E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 107 127 5.6E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 211 230 5.6E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 172 195 5.6E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RA13_06495 289e868400edaae94ba246d09622962d 261 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 87 104 5.6E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 RA13_06495 289e868400edaae94ba246d09622962d 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_06495 289e868400edaae94ba246d09622962d 261 Pfam PF00106 short chain dehydrogenase 9 202 6.9E-61 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_06495 289e868400edaae94ba246d09622962d 261 SUPERFAMILY SSF51735 7 259 3.06E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06495 289e868400edaae94ba246d09622962d 261 Gene3D G3DSA:3.40.50.720 2 259 5.1E-78 T 13-10-2018 RA13_15005 43fef7bd29d05716f2f131989e403249 221 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 150 165 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 81 93 5.4E-27 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 143 155 5.4E-27 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 21 30 5.4E-27 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 211 221 5.4E-27 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 93 107 5.4E-27 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 121 133 5.4E-27 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 25 221 8.1E-96 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 198 210 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 Pfam PF00813 FliP family 25 217 1.6E-82 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 150 170 1.1E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 42 62 1.1E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 23 42 1.1E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 171 192 1.1E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 62 81 1.1E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_15005 43fef7bd29d05716f2f131989e403249 221 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 195 220 1.1E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 RA13_00755 faea493b4521ba73c7a21c3d4314189c 334 Pfam PF01032 FecCD transport family 18 327 1.0E-84 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_00755 faea493b4521ba73c7a21c3d4314189c 334 Gene3D G3DSA:1.10.3470.10 4 333 1.7E-85 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_00755 faea493b4521ba73c7a21c3d4314189c 334 SUPERFAMILY SSF81345 5 327 1.44E-77 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_10945 dc64a0ee1510abefe016b5d0f71c4f58 218 PIRSF PIRSF016933 1 218 1.3E-88 T 13-10-2018 IPR023596 Peptidase PrsW, archaeal/bacterial GO:0008233 RA13_10945 dc64a0ee1510abefe016b5d0f71c4f58 218 Pfam PF13367 Protease prsW family 28 199 1.4E-32 T 13-10-2018 IPR026898 Protease PrsW GO:0008233 RA13_19170 0e35105ed19c51fb410496ed0d515fc6 115 Pfam PF13630 SdpI/YhfL protein family 25 88 5.8E-13 T 13-10-2018 IPR025962 SdpI/YhfL protein family RA13_03995 cee94e08fc32b8602537f16479100b8b 151 SMART SM00226 1 144 3.7E-44 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RA13_03995 cee94e08fc32b8602537f16479100b8b 151 SUPERFAMILY SSF52788 1 145 8.11E-41 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RA13_03995 cee94e08fc32b8602537f16479100b8b 151 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 3 20 2.3E-6 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RA13_03995 cee94e08fc32b8602537f16479100b8b 151 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 76 91 2.3E-6 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RA13_03995 cee94e08fc32b8602537f16479100b8b 151 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 139 5.7E-38 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RA13_03995 cee94e08fc32b8602537f16479100b8b 151 Gene3D G3DSA:3.40.50.2300 1 150 1.7E-59 T 13-10-2018 RA13_18205 b7ef4fe8840b719b8a4b6f14439c8909 346 Gene3D G3DSA:3.40.630.10 13 341 5.0E-125 T 13-10-2018 RA13_18205 b7ef4fe8840b719b8a4b6f14439c8909 346 SUPERFAMILY SSF53187 6 342 3.26E-57 T 13-10-2018 RA13_18205 b7ef4fe8840b719b8a4b6f14439c8909 346 Pfam PF05343 M42 glutamyl aminopeptidase 48 336 1.0E-91 T 13-10-2018 IPR008007 Peptidase M42 RA13_18205 b7ef4fe8840b719b8a4b6f14439c8909 346 Gene3D G3DSA:2.40.30.40 76 170 5.0E-125 T 13-10-2018 IPR023367 Peptidase M42, domain 2 RA13_18205 b7ef4fe8840b719b8a4b6f14439c8909 346 SUPERFAMILY SSF101821 73 185 8.24E-32 T 13-10-2018 RA13_18205 b7ef4fe8840b719b8a4b6f14439c8909 346 PIRSF PIRSF001123 4 343 9.1E-42 T 13-10-2018 IPR008007 Peptidase M42 RA13_06075 57510d38ef7124e932e151af601a54dc 222 Gene3D G3DSA:1.10.3720.10 9 221 4.7E-47 T 13-10-2018 IPR035906 MetI-like superfamily RA13_06075 57510d38ef7124e932e151af601a54dc 222 SUPERFAMILY SSF161098 13 209 2.75E-45 T 13-10-2018 IPR035906 MetI-like superfamily RA13_06075 57510d38ef7124e932e151af601a54dc 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 222 9.3E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 420 3.4E-172 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 PIRSF PIRSF000445 1 434 1.7E-157 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 SUPERFAMILY SSF69075 318 420 1.7E-15 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 418 5.5E-20 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 Gene3D G3DSA:3.40.50.720 161 313 5.3E-46 T 13-10-2018 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 306 8.7E-46 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 4.5E-46 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 SUPERFAMILY SSF51735 162 315 3.38E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 SUPERFAMILY SSF69742 1 158 9.68E-47 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 417 30.197 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_08645 e69587e29a1a4091ed828d2f9a264792 455 Gene3D G3DSA:3.30.460.30 1 158 2.3E-54 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RA13_05140 89a383562684b2913008b11941423fd8 85 SUPERFAMILY SSF55594 3 84 1.44E-28 T 13-10-2018 IPR035895 HPr-like superfamily RA13_05140 89a383562684b2913008b11941423fd8 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 8.1E-32 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_05140 89a383562684b2913008b11941423fd8 85 Gene3D G3DSA:3.30.1340.10 1 85 1.5E-37 T 13-10-2018 IPR035895 HPr-like superfamily RA13_05140 89a383562684b2913008b11941423fd8 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 6.1E-32 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_05140 89a383562684b2913008b11941423fd8 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.9E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_05140 89a383562684b2913008b11941423fd8 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.9E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_05140 89a383562684b2913008b11941423fd8 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.9E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_05140 89a383562684b2913008b11941423fd8 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RA13_06335 86ed76c45e15bde626cef65646f41bd2 91 PIRSF PIRSF012565 1 91 9.8E-50 T 13-10-2018 IPR009370 Protein of unknown function DUF1027 RA13_06335 86ed76c45e15bde626cef65646f41bd2 91 Pfam PF06265 Protein of unknown function (DUF1027) 4 87 5.6E-39 T 13-10-2018 IPR009370 Protein of unknown function DUF1027 RA13_06335 86ed76c45e15bde626cef65646f41bd2 91 Gene3D G3DSA:3.50.4.20 1 91 5.3E-44 T 13-10-2018 IPR038141 YutD-like superfamily RA13_14465 6b83b593839aa1561dddc3872f302011 254 SMART SM00646 64 172 3.3E-43 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_14465 6b83b593839aa1561dddc3872f302011 254 Gene3D G3DSA:3.40.630.40 1 174 8.8E-55 T 13-10-2018 RA13_14465 6b83b593839aa1561dddc3872f302011 254 SUPERFAMILY SSF53187 1 178 4.08E-52 T 13-10-2018 RA13_14465 6b83b593839aa1561dddc3872f302011 254 Gene3D G3DSA:3.30.70.1070 184 254 3.1E-27 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RA13_14465 6b83b593839aa1561dddc3872f302011 254 SUPERFAMILY SSF110997 182 252 3.92E-15 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RA13_14465 6b83b593839aa1561dddc3872f302011 254 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 4 172 2.2E-43 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_14465 6b83b593839aa1561dddc3872f302011 254 Pfam PF05036 Sporulation related domain 183 253 2.8E-17 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 RA13_06180 1d1d43cce95bf4eb2a1b9bc5fb7bc990 416 PIRSF PIRSF000524 5 413 4.9E-145 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 RA13_06180 1d1d43cce95bf4eb2a1b9bc5fb7bc990 416 Gene3D G3DSA:3.40.640.10 23 286 3.5E-149 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_06180 1d1d43cce95bf4eb2a1b9bc5fb7bc990 416 SUPERFAMILY SSF53383 12 390 5.71E-98 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_06180 1d1d43cce95bf4eb2a1b9bc5fb7bc990 416 Gene3D G3DSA:3.90.1150.10 9 384 3.5E-149 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_06180 1d1d43cce95bf4eb2a1b9bc5fb7bc990 416 Pfam PF00266 Aminotransferase class-V 36 355 1.4E-33 T 13-10-2018 IPR000192 Aminotransferase class V domain RA13_06180 1d1d43cce95bf4eb2a1b9bc5fb7bc990 416 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 209 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RA13_07415 acd1460a5d280329888a0b69495aeeea 158 PRINTS PR00502 NUDIX hydrolase family signature 62 77 8.4E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RA13_07415 acd1460a5d280329888a0b69495aeeea 158 PRINTS PR00502 NUDIX hydrolase family signature 48 62 8.4E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RA13_07415 acd1460a5d280329888a0b69495aeeea 158 SUPERFAMILY SSF55811 28 116 4.33E-20 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RA13_07415 acd1460a5d280329888a0b69495aeeea 158 Gene3D G3DSA:3.90.79.10 1 158 3.0E-50 T 13-10-2018 RA13_07415 acd1460a5d280329888a0b69495aeeea 158 Pfam PF00293 NUDIX domain 31 88 4.2E-13 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RA13_07415 acd1460a5d280329888a0b69495aeeea 158 ProSitePatterns PS00893 Nudix box signature. 53 74 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RA13_07415 acd1460a5d280329888a0b69495aeeea 158 TIGRFAM TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD 3 156 1.8E-67 T 13-10-2018 IPR014078 Nucleoside triphosphatase YtkD MetaCyc: PWY-6502 RA13_10515 92fab3a025be1e842e3c5664a1606990 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 104 2.1E-24 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RA13_10515 92fab3a025be1e842e3c5664a1606990 107 SUPERFAMILY SSF89360 1 105 5.1E-24 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RA13_10515 92fab3a025be1e842e3c5664a1606990 107 Gene3D G3DSA:2.60.300.12 1 95 8.9E-6 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Gene3D G3DSA:1.10.730.10 352 521 7.8E-52 T 13-10-2018 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 SUPERFAMILY SSF50249 563 663 1.49E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Gene3D G3DSA:2.170.220.10 119 239 9.5E-153 T 13-10-2018 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 SUPERFAMILY SSF47323 364 577 5.07E-49 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Pfam PF08264 Anticodon-binding domain of tRNA 397 537 1.3E-8 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Pfam PF01588 Putative tRNA binding domain 570 661 1.9E-26 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 SUPERFAMILY SSF52374 4 361 5.35E-116 T 13-10-2018 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Gene3D G3DSA:2.40.50.140 555 664 4.4E-34 T 13-10-2018 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Hamap MF_01228 Methionine--tRNA ligase [metG]. 3 523 51.811 T 13-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 17 26 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Gene3D G3DSA:3.40.50.620 8 345 9.5E-153 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_01525 c93d30ca27bb4a51848566db204b8174 664 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 2.3E-32 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 PRINTS PR01041 Methionyl-tRNA synthetase signature 237 248 2.3E-32 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 PRINTS PR01041 Methionyl-tRNA synthetase signature 270 285 2.3E-32 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 2.3E-32 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 PRINTS PR01041 Methionyl-tRNA synthetase signature 362 373 2.3E-32 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 2.3E-32 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 524 3.0E-192 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 Pfam PF09334 tRNA synthetases class I (M) 8 374 1.0E-119 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_01525 c93d30ca27bb4a51848566db204b8174 664 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 533 664 1.5E-50 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RA13_02740 7f8290c9f5664eded31072238b91b63c 148 Pfam PF09021 HutP 9 146 9.6E-36 T 13-10-2018 IPR015111 Hut operon regulatory protein HutP RA13_02740 7f8290c9f5664eded31072238b91b63c 148 Hamap MF_00779 Hut operon positive regulatory protein [hutP]. 1 148 45.622 T 13-10-2018 IPR023552 Hut operon regulatory protein HutP, bacillales RA13_02740 7f8290c9f5664eded31072238b91b63c 148 SUPERFAMILY SSF111064 7 148 4.18E-62 T 13-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily RA13_02740 7f8290c9f5664eded31072238b91b63c 148 Gene3D G3DSA:3.40.1510.10 2 148 3.1E-67 T 13-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily RA13_19735 9b84c7b84199e6dd0794f6012f07395f 303 SUPERFAMILY SSF53448 5 281 3.09E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19735 9b84c7b84199e6dd0794f6012f07395f 303 Pfam PF03407 Nucleotide-diphospho-sugar transferase 34 198 9.3E-8 T 13-10-2018 IPR005069 Nucleotide-diphospho-sugar transferase RA13_16285 9b4718c70ce3d972dcf0ecdaccb0028e 446 PIRSF PIRSF038958 1 437 6.0E-70 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type RA13_16285 9b4718c70ce3d972dcf0ecdaccb0028e 446 Pfam PF01943 Polysaccharide biosynthesis protein 5 294 2.7E-23 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 RA13_19720 de8256fadc8c642267cfae59d0082869 410 Gene3D G3DSA:1.20.1250.20 223 405 3.2E-23 T 13-10-2018 RA13_19720 de8256fadc8c642267cfae59d0082869 410 Pfam PF07690 Major Facilitator Superfamily 28 354 4.5E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19720 de8256fadc8c642267cfae59d0082869 410 Gene3D G3DSA:1.20.1250.20 10 198 7.4E-19 T 13-10-2018 RA13_19720 de8256fadc8c642267cfae59d0082869 410 SUPERFAMILY SSF103473 11 400 2.09E-54 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_21415 56cf9e056deefa27925a1b6f9b0395f3 191 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 6.8E-14 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_21415 56cf9e056deefa27925a1b6f9b0395f3 191 Gene3D G3DSA:1.10.10.10 1 60 5.8E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21415 56cf9e056deefa27925a1b6f9b0395f3 191 SUPERFAMILY SSF46785 1 55 4.16E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21415 56cf9e056deefa27925a1b6f9b0395f3 191 SMART SM00420 6 58 1.2E-12 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_21415 56cf9e056deefa27925a1b6f9b0395f3 191 SUPERFAMILY SSF160387 83 189 9.42E-21 T 13-10-2018 RA13_08265 9548e0749f644f2d322861648e615a47 183 ProSitePatterns PS00938 Initiation factor 3 signature. 69 82 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 RA13_08265 9548e0749f644f2d322861648e615a47 183 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 18 180 6.4E-78 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RA13_08265 9548e0749f644f2d322861648e615a47 183 Gene3D G3DSA:3.30.110.10 90 183 1.2E-37 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RA13_08265 9548e0749f644f2d322861648e615a47 183 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 12 181 31.09 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RA13_08265 9548e0749f644f2d322861648e615a47 183 SUPERFAMILY SSF54364 16 89 3.92E-29 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RA13_08265 9548e0749f644f2d322861648e615a47 183 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 94 179 3.2E-38 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 RA13_08265 9548e0749f644f2d322861648e615a47 183 Gene3D G3DSA:3.10.20.80 12 89 5.1E-34 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RA13_08265 9548e0749f644f2d322861648e615a47 183 SUPERFAMILY SSF55200 93 182 1.96E-33 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RA13_08265 9548e0749f644f2d322861648e615a47 183 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 18 87 6.3E-32 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RA13_10360 582d6fddec4588f1c934de29beb33262 176 Gene3D G3DSA:2.40.440.10 11 175 1.6E-38 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RA13_10360 582d6fddec4588f1c934de29beb33262 176 SUPERFAMILY SSF141523 24 151 2.75E-31 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RA13_10360 582d6fddec4588f1c934de29beb33262 176 Pfam PF03734 L,D-transpeptidase catalytic domain 27 150 1.5E-19 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RA13_00730 d159ef41cb8c6427f8781eb37b92c5b0 445 Hamap MF_01034 UPF0214 protein YfeW [yfeW]. 1 445 74.196 T 13-10-2018 IPR022849 Peptidase S12, UPF0214, YfeW-type RA13_00730 d159ef41cb8c6427f8781eb37b92c5b0 445 Pfam PF00144 Beta-lactamase 56 424 2.0E-73 T 13-10-2018 IPR001466 Beta-lactamase-related RA13_00730 d159ef41cb8c6427f8781eb37b92c5b0 445 Gene3D G3DSA:3.40.710.10 39 419 7.9E-87 T 13-10-2018 RA13_00730 d159ef41cb8c6427f8781eb37b92c5b0 445 SUPERFAMILY SSF56601 50 415 4.64E-77 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_10420 f79de9a843253b8ba82bcd09ba9eb242 257 Pfam PF12146 Serine aminopeptidase, S33 29 135 1.1E-11 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RA13_10420 f79de9a843253b8ba82bcd09ba9eb242 257 SUPERFAMILY SSF53474 4 234 8.36E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_10420 f79de9a843253b8ba82bcd09ba9eb242 257 Gene3D G3DSA:3.40.50.1820 6 241 9.5E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_08770 379c0b89f46d9b43e6a5bf3abf7d8ee5 192 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 15 71 4.9E-22 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain RA13_08770 379c0b89f46d9b43e6a5bf3abf7d8ee5 192 Gene3D G3DSA:3.30.565.30 72 190 3.5E-41 T 13-10-2018 IPR037100 Sporulation initiation phosphotransferase B, C-terminal domain superfamily RA13_08770 379c0b89f46d9b43e6a5bf3abf7d8ee5 192 SUPERFAMILY SSF55890 14 190 1.22E-62 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 RA13_08770 379c0b89f46d9b43e6a5bf3abf7d8ee5 192 Pfam PF14682 Sporulation initiation phospho-transferase B, C-terminal 74 185 2.3E-34 T 13-10-2018 IPR016122 Sporulation initiation phosphotransferase B, C-terminal RA13_08770 379c0b89f46d9b43e6a5bf3abf7d8ee5 192 SMART SM01317 73 187 1.3E-58 T 13-10-2018 IPR016122 Sporulation initiation phosphotransferase B, C-terminal RA13_08770 379c0b89f46d9b43e6a5bf3abf7d8ee5 192 Gene3D G3DSA:1.10.287.130 1 71 4.7E-32 T 13-10-2018 RA13_02065 bd481c0bb1c1933b43b5b98b860a897c 162 Pfam PF07875 Coat F domain 84 142 9.4E-22 T 13-10-2018 IPR012851 Spore coat protein CotF-like RA13_15110 aaa010bded89be084dad2e0bad9b2c07 181 SUPERFAMILY SSF56235 4 180 2.04E-59 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_15110 aaa010bded89be084dad2e0bad9b2c07 181 PIRSF PIRSF039093 1 181 3.5E-84 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RA13_15110 aaa010bded89be084dad2e0bad9b2c07 181 Gene3D G3DSA:3.60.20.10 2 181 2.6E-68 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_15110 aaa010bded89be084dad2e0bad9b2c07 181 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 180 41.244 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RA13_15110 aaa010bded89be084dad2e0bad9b2c07 181 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 180 4.4E-82 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 RA13_15110 aaa010bded89be084dad2e0bad9b2c07 181 Pfam PF00227 Proteasome subunit 5 177 3.2E-26 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 RA13_19250 e9c8b81eac2b395e1340cde2db413210 160 SUPERFAMILY SSF46785 24 154 2.32E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_19250 e9c8b81eac2b395e1340cde2db413210 160 SMART SM00347 40 140 1.6E-36 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_19250 e9c8b81eac2b395e1340cde2db413210 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 1.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_19250 e9c8b81eac2b395e1340cde2db413210 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 1.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_19250 e9c8b81eac2b395e1340cde2db413210 160 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 1.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_19250 e9c8b81eac2b395e1340cde2db413210 160 Gene3D G3DSA:1.10.10.10 17 155 8.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19250 e9c8b81eac2b395e1340cde2db413210 160 Pfam PF01047 MarR family 48 105 1.9E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_18185 4c04c151aa12d413142aff2ed24798e0 331 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 246 330 3.8E-32 T 13-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 RA13_18185 4c04c151aa12d413142aff2ed24798e0 331 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 2 322 1.4E-140 T 13-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 RA13_18185 4c04c151aa12d413142aff2ed24798e0 331 Gene3D G3DSA:3.30.930.10 3 244 2.2E-81 T 13-10-2018 RA13_18185 4c04c151aa12d413142aff2ed24798e0 331 SUPERFAMILY SSF82649 245 331 1.05E-28 T 13-10-2018 RA13_18185 4c04c151aa12d413142aff2ed24798e0 331 Pfam PF03099 Biotin/lipoate A/B protein ligase family 48 153 8.9E-12 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RA13_18185 4c04c151aa12d413142aff2ed24798e0 331 Gene3D G3DSA:3.30.390.50 245 331 1.9E-32 T 13-10-2018 RA13_18185 4c04c151aa12d413142aff2ed24798e0 331 SUPERFAMILY SSF55681 2 244 6.53E-82 T 13-10-2018 RA13_07290 96d17101dec747254509272847c54cd2 239 Gene3D G3DSA:1.20.120.910 1 128 3.1E-28 T 13-10-2018 RA13_07290 96d17101dec747254509272847c54cd2 239 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 89 113 3.0E-7 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RA13_07290 96d17101dec747254509272847c54cd2 239 SUPERFAMILY SSF109635 2 90 6.67E-15 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily RA13_07290 96d17101dec747254509272847c54cd2 239 TIGRFAM TIGR02890 bacill_yteA: regulatory protein, yteA family 5 163 6.7E-61 T 13-10-2018 IPR014240 Regulatory protein, YteA family RA13_05715 7452b61ea0068718835c4d4175dd47b1 671 Pfam PF00999 Sodium/hydrogen exchanger family 6 412 1.7E-66 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RA13_05715 7452b61ea0068718835c4d4175dd47b1 671 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 9 523 3.5E-104 T 13-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 RA13_04680 afe537d61cc6595e77fe84f4ff3e3de5 275 Pfam PF01061 ABC-2 type transporter 18 233 6.9E-28 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Pfam PF13604 AAA domain 345 553 7.8E-51 T 13-10-2018 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Gene3D G3DSA:3.40.50.300 516 744 2.1E-141 T 13-10-2018 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 SMART SM00382 358 512 8.6E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Pfam PF14490 Helix-hairpin-helix containing domain 158 248 1.4E-30 T 13-10-2018 IPR029493 RecD helicase-like helix-hairpin-helix domain RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Gene3D G3DSA:1.10.10.2220 199 306 2.0E-15 T 13-10-2018 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Pfam PF13538 UvrD-like helicase C-terminal domain 680 728 4.6E-18 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 16 754 9.7E-260 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 13 764 29.873 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Gene3D G3DSA:2.30.30.940 602 681 2.1E-141 T 13-10-2018 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 SUPERFAMILY SSF52540 468 750 1.75E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 Gene3D G3DSA:3.40.50.300 337 750 2.1E-141 T 13-10-2018 RA13_09050 bae87445d744154e0dc9ad6014a6a3c2 797 SUPERFAMILY SSF52540 197 516 1.84E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15560 46b9302dc702dd5dbb4196aa33e54f13 231 Gene3D G3DSA:3.30.70.1880 91 231 2.6E-33 T 13-10-2018 RA13_15560 46b9302dc702dd5dbb4196aa33e54f13 231 Pfam PF05949 Bacterial protein of unknown function (DUF881) 92 227 8.4E-35 T 13-10-2018 IPR010273 Protein of unknown function DUF881 RA13_07930 602f5603fbc19ed9a8b62446f29ad456 160 SMART SM00065 21 160 0.008 T 13-10-2018 IPR003018 GAF domain GO:0005515 RA13_07930 602f5603fbc19ed9a8b62446f29ad456 160 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 98 115 - T 13-10-2018 IPR000614 Free Met sulfoxide reductase conserved site RA13_07930 602f5603fbc19ed9a8b62446f29ad456 160 SUPERFAMILY SSF55781 7 158 8.34E-43 T 13-10-2018 RA13_07930 602f5603fbc19ed9a8b62446f29ad456 160 Pfam PF13185 GAF domain 54 159 9.9E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 RA13_07930 602f5603fbc19ed9a8b62446f29ad456 160 Gene3D G3DSA:3.30.450.40 10 160 1.7E-64 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_12090 dd4b91cbd88a6978231ad05ae09eac9c 1293 SUPERFAMILY SSF57997 20 147 5.95E-6 T 13-10-2018 RA13_12090 dd4b91cbd88a6978231ad05ae09eac9c 1293 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 588 956 0.001 T 13-10-2018 RA13_12090 dd4b91cbd88a6978231ad05ae09eac9c 1293 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 163 507 2.8E-99 T 13-10-2018 IPR010090 Phage tail tape measure protein RA13_12090 dd4b91cbd88a6978231ad05ae09eac9c 1293 Pfam PF10145 Phage-related minor tail protein 201 399 2.0E-44 T 13-10-2018 IPR010090 Phage tail tape measure protein RA13_03365 e40401005925c33b628d0f6d708d0151 128 Pfam PF03788 LrgA family 21 110 6.5E-27 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 RA13_03365 e40401005925c33b628d0f6d708d0151 128 Hamap MF_01143 Holin-like protein CidA [cidA]. 1 119 23.572 T 13-10-2018 IPR023760 Holin-like protein CidA GO:0016021 RA13_02810 8c78af4d9968be228b73431c3a417af9 198 SUPERFAMILY SSF53850 18 169 8.79E-7 T 13-10-2018 RA13_11240 6b977c69c9c670f6a812637e81a003f1 56 PIRSF PIRSF036698 1 56 1.8E-37 T 13-10-2018 IPR012190 Uncharacterised conserved protein UCP036698, YpmA RA13_11240 6b977c69c9c670f6a812637e81a003f1 56 Pfam PF14084 Protein of unknown function (DUF4264) 4 56 6.9E-25 T 13-10-2018 IPR012190 Uncharacterised conserved protein UCP036698, YpmA RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 SUPERFAMILY SSF54001 166 285 1.73E-38 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 Gene3D G3DSA:3.90.1720.10 286 411 4.7E-34 T 13-10-2018 RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 Gene3D G3DSA:3.90.1720.10 26 159 2.1E-38 T 13-10-2018 RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 Gene3D G3DSA:3.90.1720.10 160 285 4.8E-43 T 13-10-2018 RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 SUPERFAMILY SSF54001 32 156 6.38E-34 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 Pfam PF00877 NlpC/P60 family 306 408 7.7E-22 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 Pfam PF00877 NlpC/P60 family 48 154 2.4E-25 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 Pfam PF00877 NlpC/P60 family 177 283 1.5E-30 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_04605 0554964442166ddb759bb3fa2e0234c2 411 SUPERFAMILY SSF54001 293 410 1.08E-30 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_20615 ff01a9f7d56f14247f9bb1767caf4891 203 Gene3D G3DSA:1.10.287.70 39 143 3.0E-6 T 13-10-2018 RA13_20615 ff01a9f7d56f14247f9bb1767caf4891 203 SUPERFAMILY SSF81324 43 128 1.35E-5 T 13-10-2018 RA13_20615 ff01a9f7d56f14247f9bb1767caf4891 203 Pfam PF10067 Predicted membrane protein (DUF2306) 46 192 4.9E-35 T 13-10-2018 IPR018750 Protein of unknown function DUF2306, membrane RA13_07365 e86c38fce6f27049f50e83601c589d33 82 SUPERFAMILY SSF143800 1 80 1.49E-22 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 7.3E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 Pfam PF01197 Ribosomal protein L31 1 79 2.1E-26 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.2E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 PRINTS PR01249 Ribosomal protein L31 signature 60 78 1.2E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 PRINTS PR01249 Ribosomal protein L31 signature 45 60 1.2E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 24.023 T 13-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_07365 e86c38fce6f27049f50e83601c589d33 82 Gene3D G3DSA:2.30.170.50 1 82 9.9E-24 T 13-10-2018 RA13_02100 3ba050fd6cb3090d9ec5bfcf2d385f67 44 Pfam PF14174 YycC-like protein 1 44 1.7E-23 T 13-10-2018 IPR025550 YycC-like protein RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 250 438 9.9E-26 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 Hamap MF_01535 Rhamnulokinase [rhaB]. 3 480 52.863 T 13-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 SUPERFAMILY SSF53067 2 242 1.11E-45 T 13-10-2018 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 5 458 2.7E-184 T 13-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 SUPERFAMILY SSF53067 247 467 8.27E-34 T 13-10-2018 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 Gene3D G3DSA:3.30.420.40 2 233 6.4E-74 T 13-10-2018 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 PIRSF PIRSF000538 1 479 5.9E-40 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 Gene3D G3DSA:3.30.420.40 234 479 1.2E-98 T 13-10-2018 RA13_06910 37a65be4d47f69d0001dd5e097e22292 480 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 240 9.5E-33 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RA13_12760 e878474a048ce3ccdd1d5d9f4801e6c0 120 SMART SM00448 2 114 7.9E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_12760 e878474a048ce3ccdd1d5d9f4801e6c0 120 SUPERFAMILY SSF52172 1 119 3.7E-35 T 13-10-2018 IPR011006 CheY-like superfamily RA13_12760 e878474a048ce3ccdd1d5d9f4801e6c0 120 Pfam PF00072 Response regulator receiver domain 4 115 4.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_12760 e878474a048ce3ccdd1d5d9f4801e6c0 120 Gene3D G3DSA:3.40.50.2300 1 120 4.3E-34 T 13-10-2018 RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 53 2.0E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 SUPERFAMILY SSF53822 68 336 3.46E-79 T 13-10-2018 IPR028082 Periplasmic binding protein-like I RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 Gene3D G3DSA:3.40.50.2300 168 334 3.5E-80 T 13-10-2018 RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 SMART SM00354 8 78 3.7E-28 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 Pfam PF13377 Periplasmic binding protein-like domain 176 337 6.2E-39 T 13-10-2018 RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 Gene3D G3DSA:3.40.50.2300 69 329 3.5E-80 T 13-10-2018 RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 SUPERFAMILY SSF47413 7 66 2.18E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_19505 f864a6554ddf27ee1b5cc3f5d5784777 337 Gene3D G3DSA:1.10.260.40 1 66 6.1E-21 T 13-10-2018 RA13_00375 5118caece4710da97b5db6e611912a1d 264 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 53 263 6.9E-72 T 13-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RA13_00375 5118caece4710da97b5db6e611912a1d 264 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 12 264 36.024 T 13-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 RA13_00375 5118caece4710da97b5db6e611912a1d 264 Pfam PF02666 Phosphatidylserine decarboxylase 65 262 1.9E-53 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RA13_16245 84702c5692d3eb35ff694687624db347 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.3E-26 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_16245 84702c5692d3eb35ff694687624db347 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.3E-26 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_16245 84702c5692d3eb35ff694687624db347 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.3E-26 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_16245 84702c5692d3eb35ff694687624db347 88 Gene3D G3DSA:3.30.1340.10 1 88 9.3E-38 T 13-10-2018 IPR035895 HPr-like superfamily RA13_16245 84702c5692d3eb35ff694687624db347 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 6.4E-33 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_16245 84702c5692d3eb35ff694687624db347 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site RA13_16245 84702c5692d3eb35ff694687624db347 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RA13_16245 84702c5692d3eb35ff694687624db347 88 SUPERFAMILY SSF55594 1 83 1.57E-28 T 13-10-2018 IPR035895 HPr-like superfamily RA13_16245 84702c5692d3eb35ff694687624db347 88 Pfam PF00381 PTS HPr component phosphorylation site 3 82 1.8E-30 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like RA13_07335 7bf147ad90fa473e513072bc858c583a 437 Gene3D G3DSA:1.10.10.10 297 435 4.7E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07335 7bf147ad90fa473e513072bc858c583a 437 Pfam PF00950 ABC 3 transport family 10 276 3.2E-81 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 RA13_07335 7bf147ad90fa473e513072bc858c583a 437 Gene3D G3DSA:1.10.3470.10 4 281 1.1E-6 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_07335 7bf147ad90fa473e513072bc858c583a 437 SUPERFAMILY SSF81345 5 274 3.53E-29 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_11610 991c48a18c15af6baf66c0f47fe2b185 177 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 6 157 1.7E-68 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RA13_11610 991c48a18c15af6baf66c0f47fe2b185 177 SUPERFAMILY SSF55068 3 168 1.01E-71 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RA13_11610 991c48a18c15af6baf66c0f47fe2b185 177 Gene3D G3DSA:3.30.1060.10 1 164 4.0E-66 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RA13_11610 991c48a18c15af6baf66c0f47fe2b185 177 Pfam PF01625 Peptide methionine sulfoxide reductase 8 158 4.5E-61 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RA13_11610 991c48a18c15af6baf66c0f47fe2b185 177 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 5 164 36.682 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 Pfam PF11738 Protein of unknown function (DUF3298) 155 232 1.4E-10 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 Pfam PF13739 Domain of unknown function (DUF4163) 56 137 2.3E-10 T 13-10-2018 IPR025303 Deacetylase PdaC RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 SUPERFAMILY SSF88713 272 458 1.13E-59 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 Gene3D G3DSA:3.30.565.40 31 151 2.7E-13 T 13-10-2018 RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 PIRSF PIRSF037479 2 466 4.6E-155 T 13-10-2018 IPR017219 Peptidoglycan GlcNAc deacetylase RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 Gene3D G3DSA:3.90.640.20 153 240 3.6E-18 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 Pfam PF01522 Polysaccharide deacetylase 276 385 1.8E-32 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_17230 b915cf7fc43c771d8fd9994f7d810bf0 466 Gene3D G3DSA:3.20.20.370 262 466 8.8E-68 T 13-10-2018 RA13_19205 004bd37c69799382e0aaab6752486970 303 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 2.8E-105 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 RA13_19205 004bd37c69799382e0aaab6752486970 303 Gene3D G3DSA:3.40.50.720 1 287 1.4E-71 T 13-10-2018 RA13_19205 004bd37c69799382e0aaab6752486970 303 Pfam PF08338 Domain of unknown function (DUF1731) 250 296 6.9E-13 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 RA13_19205 004bd37c69799382e0aaab6752486970 303 SUPERFAMILY SSF51735 1 266 5.8E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_19205 004bd37c69799382e0aaab6752486970 303 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 216 6.3E-18 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RA13_15440 7a6b162e858ec85c28ac216312f391ae 434 Pfam PF00860 Permease family 18 393 9.8E-116 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RA13_15440 7a6b162e858ec85c28ac216312f391ae 434 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 16 418 1.1E-138 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RA13_15440 7a6b162e858ec85c28ac216312f391ae 434 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 340 360 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RA13_01495 11dd9f0941f51585335cca3f5eae5a5c 86 Pfam PF06257 Biofilm formation stimulator VEG 4 74 1.2E-30 T 13-10-2018 IPR009366 Protein Veg GO:0006355 RA13_01495 11dd9f0941f51585335cca3f5eae5a5c 86 PIRSF PIRSF037257 1 85 3.5E-36 T 13-10-2018 IPR009366 Protein Veg GO:0006355 RA13_01495 11dd9f0941f51585335cca3f5eae5a5c 86 Gene3D G3DSA:2.30.30.100 1 78 4.0E-25 T 13-10-2018 RA13_09650 ac02c81b21aa9bf164d211906c54c8bb 396 PIRSF PIRSF029895 1 396 2.1E-170 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD RA13_09650 ac02c81b21aa9bf164d211906c54c8bb 396 TIGRFAM TIGR02876 spore_yqfD: sporulation protein YqfD 5 388 6.3E-115 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD RA13_09650 ac02c81b21aa9bf164d211906c54c8bb 396 Pfam PF06898 Putative stage IV sporulation protein YqfD 8 386 8.8E-120 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD RA13_02180 a3f55e5ee7f800ef4e7906ff90f0f7a0 85 Pfam PF03413 Peptidase propeptide and YPEB domain 29 83 2.2E-5 T 13-10-2018 IPR025711 PepSY domain RA13_02180 a3f55e5ee7f800ef4e7906ff90f0f7a0 85 Gene3D G3DSA:3.10.450.40 19 85 4.6E-12 T 13-10-2018 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 294 1.9E-49 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 Gene3D G3DSA:3.50.50.60 8 301 1.4E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 3.0E-35 T 13-10-2018 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.0E-35 T 13-10-2018 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 3.0E-35 T 13-10-2018 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 3.0E-35 T 13-10-2018 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 3.0E-35 T 13-10-2018 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 Gene3D G3DSA:3.50.50.60 117 240 1.4E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 SUPERFAMILY SSF51905 4 302 1.86E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 268 286 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 195 211 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 234 255 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 7.6E-72 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RA13_05115 edd5b01a004074a8b37cbccdd447206c 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 305 2.8E-121 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 RA13_06100 b14d5f2303325d0a699ab108c77f73a8 406 Gene3D G3DSA:3.90.1150.10 6 395 2.1E-186 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_06100 b14d5f2303325d0a699ab108c77f73a8 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 5 402 8.9E-195 T 13-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RA13_06100 b14d5f2303325d0a699ab108c77f73a8 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 215 234 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RA13_06100 b14d5f2303325d0a699ab108c77f73a8 406 SUPERFAMILY SSF53383 2 398 1.48E-134 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_06100 b14d5f2303325d0a699ab108c77f73a8 406 Gene3D G3DSA:3.40.640.10 34 294 2.1E-186 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_06100 b14d5f2303325d0a699ab108c77f73a8 406 PIRSF PIRSF005572 20 404 3.7E-51 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RA13_06100 b14d5f2303325d0a699ab108c77f73a8 406 Pfam PF00266 Aminotransferase class-V 23 391 1.2E-165 T 13-10-2018 IPR000192 Aminotransferase class V domain RA13_02435 bd674c749137f2e6fb04535fbceca988 243 SUPERFAMILY SSF46785 14 84 1.85E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_02435 bd674c749137f2e6fb04535fbceca988 243 Gene3D G3DSA:1.10.10.10 17 76 1.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_02435 bd674c749137f2e6fb04535fbceca988 243 Gene3D G3DSA:1.20.120.530 77 227 1.9E-16 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_02435 bd674c749137f2e6fb04535fbceca988 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 80 7.5E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_02435 bd674c749137f2e6fb04535fbceca988 243 SMART SM00895 90 219 3.8E-6 T 13-10-2018 IPR011711 GntR, C-terminal RA13_02435 bd674c749137f2e6fb04535fbceca988 243 SMART SM00345 23 81 8.2E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_02435 bd674c749137f2e6fb04535fbceca988 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 5.2E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_02435 bd674c749137f2e6fb04535fbceca988 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 5.2E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_02435 bd674c749137f2e6fb04535fbceca988 243 SUPERFAMILY SSF48008 86 224 1.99E-19 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_02435 bd674c749137f2e6fb04535fbceca988 243 Pfam PF07729 FCD domain 90 213 1.0E-14 T 13-10-2018 IPR011711 GntR, C-terminal RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 Gene3D G3DSA:1.25.40.10 2 375 9.9E-115 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 SMART SM00028 219 252 7.7E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 SMART SM00028 136 169 440.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 SMART SM00028 258 291 3.6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 SMART SM00028 96 129 19.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 Pfam PF13181 Tetratricopeptide repeat 220 246 0.0081 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 Pfam PF13181 Tetratricopeptide repeat 259 286 0.15 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19985 60af7f014b8522fafefde5d4c2867f77 375 SUPERFAMILY SSF48452 97 286 1.61E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_12260 501cfe76c99e6bd750d44737882b7c9f 163 SUPERFAMILY SSF109635 3 85 6.28E-12 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily RA13_12260 501cfe76c99e6bd750d44737882b7c9f 163 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 84 118 1.3E-11 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RA13_12260 501cfe76c99e6bd750d44737882b7c9f 163 Gene3D G3DSA:1.20.120.910 1 123 1.5E-28 T 13-10-2018 RA13_12260 501cfe76c99e6bd750d44737882b7c9f 163 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 89 113 - T 13-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RA13_12260 501cfe76c99e6bd750d44737882b7c9f 163 SUPERFAMILY SSF57716 86 118 8.27E-7 T 13-10-2018 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Gene3D G3DSA:1.10.3500.10 114 493 3.8E-152 T 13-10-2018 IPR023323 Tex-like domain superfamily RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 SUPERFAMILY SSF50249 633 717 1.27E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Pfam PF16921 Tex protein YqgF-like domain 321 446 1.8E-56 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 SMART SM00316 647 718 2.5E-23 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 SUPERFAMILY SSF53098 317 464 4.4E-50 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Gene3D G3DSA:3.30.420.140 320 446 3.8E-152 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Gene3D G3DSA:2.40.50.140 633 719 2.3E-25 T 13-10-2018 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Pfam PF12836 Helix-hairpin-helix motif 486 550 1.1E-23 T 13-10-2018 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 SUPERFAMILY SSF47781 556 630 1.18E-14 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 SUPERFAMILY SSF158832 9 316 6.02E-108 T 13-10-2018 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 SMART SM00732 321 419 4.1E-36 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Gene3D G3DSA:1.10.150.310 494 628 2.5E-44 T 13-10-2018 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 SUPERFAMILY SSF47781 465 553 4.11E-24 T 13-10-2018 IPR010994 RuvA domain 2-like RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Pfam PF00575 S1 RNA binding domain 646 717 3.1E-18 T 13-10-2018 IPR003029 S1 domain GO:0003676 RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Gene3D G3DSA:1.10.10.650 4 111 1.8E-37 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily RA13_20980 9a9b951e3c95f2cce737d3d047db188d 719 Pfam PF09371 Tex-like protein N-terminal domain 11 195 1.7E-67 T 13-10-2018 IPR018974 Tex-like protein, N-terminal RA13_20185 423bcdefb0276b7bc71e2b24891d1f90 65 Pfam PF14044 NETI protein 8 63 4.3E-28 T 13-10-2018 IPR025930 NETI protein RA13_10875 7d83d9bb71ea4acf3c78d963403a5500 366 ProDom PD136539 TRANSCRIPTION SIGMA-X NEGATIVE ACTIVITY RSIX REPRESSOR MEMBRANE EFFECTOR REGULATION REGULATOR 1 361 6.0E-103 T 13-10-2018 RA13_04625 16caa01975663fa8cebd58460e3f3df7 467 SUPERFAMILY SSF53448 8 251 3.38E-53 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04625 16caa01975663fa8cebd58460e3f3df7 467 Gene3D G3DSA:3.90.550.10 2 230 1.2E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04625 16caa01975663fa8cebd58460e3f3df7 467 Gene3D G3DSA:3.40.50.150 256 467 1.7E-45 T 13-10-2018 RA13_04625 16caa01975663fa8cebd58460e3f3df7 467 SUPERFAMILY SSF53335 250 423 4.54E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_04625 16caa01975663fa8cebd58460e3f3df7 467 Pfam PF00535 Glycosyl transferase family 2 11 178 8.1E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_04625 16caa01975663fa8cebd58460e3f3df7 467 Pfam PF13489 Methyltransferase domain 258 415 6.0E-21 T 13-10-2018 RA13_01490 be3f0957f01e6b31505415b2b124f2c2 61 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 13 22 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_01490 be3f0957f01e6b31505415b2b124f2c2 61 Gene3D G3DSA:1.10.8.910 6 61 5.0E-6 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily RA13_01490 be3f0957f01e6b31505415b2b124f2c2 61 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 10 54 2.1E-7 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 RA13_09865 8f55d03ab547caad35c2368c7d3642ef 375 Pfam PF00534 Glycosyl transferases group 1 186 346 1.6E-37 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_09865 8f55d03ab547caad35c2368c7d3642ef 375 Pfam PF13439 Glycosyltransferase Family 4 39 176 5.3E-16 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RA13_09865 8f55d03ab547caad35c2368c7d3642ef 375 Gene3D G3DSA:3.40.50.2000 50 365 4.5E-62 T 13-10-2018 RA13_09865 8f55d03ab547caad35c2368c7d3642ef 375 SUPERFAMILY SSF53756 3 371 2.76E-70 T 13-10-2018 RA13_09865 8f55d03ab547caad35c2368c7d3642ef 375 Gene3D G3DSA:3.40.50.2000 176 349 4.5E-62 T 13-10-2018 RA13_14485 3bb65e8a1983530866dc5357bc499c49 130 Hamap MF_00128 Protein NrdI [nrdI]. 2 122 27.163 T 13-10-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial RA13_14485 3bb65e8a1983530866dc5357bc499c49 130 Gene3D G3DSA:3.40.50.360 1 130 1.8E-46 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_14485 3bb65e8a1983530866dc5357bc499c49 130 Pfam PF07972 NrdI Flavodoxin like 4 112 4.5E-32 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI RA13_14485 3bb65e8a1983530866dc5357bc499c49 130 TIGRFAM TIGR00333 nrdI: nrdI protein 4 124 2.8E-47 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI RA13_14485 3bb65e8a1983530866dc5357bc499c49 130 SUPERFAMILY SSF52218 2 121 1.49E-24 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_14485 3bb65e8a1983530866dc5357bc499c49 130 PIRSF PIRSF005087 1 126 4.7E-40 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 Gene3D G3DSA:3.40.350.10 1 135 3.1E-40 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 Pfam PF00557 Metallopeptidase family M24 145 347 1.8E-62 T 13-10-2018 IPR000994 Peptidase M24 RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 PRINTS PR00599 Methionine aminopeptidase-1 signature 217 233 3.4E-6 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 PRINTS PR00599 Methionine aminopeptidase-1 signature 315 327 3.4E-6 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 Gene3D G3DSA:3.90.230.10 136 361 6.6E-80 T 13-10-2018 RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 SUPERFAMILY SSF55920 136 363 5.23E-76 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 293 305 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 SUPERFAMILY SSF53092 2 135 3.49E-33 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RA13_16265 aa266bbdd59d3ba4fcf0cd298f326001 364 Pfam PF01321 Creatinase/Prolidase N-terminal domain 3 137 1.3E-27 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 Gene3D G3DSA:1.25.40.10 1 377 1.3E-120 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 SUPERFAMILY SSF48452 191 367 5.69E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 SUPERFAMILY SSF48452 103 210 1.8E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 Pfam PF13181 Tetratricopeptide repeat 222 248 0.0011 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 SMART SM00028 260 293 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 SMART SM00028 140 173 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 SMART SM00028 335 368 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 SMART SM00028 221 254 6.9E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_04120 ff6598a74d4a9566656fb81111ece852 377 SMART SM00028 100 133 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19530 978b320ac33dcbc79fca91346fad3229 564 Gene3D G3DSA:3.20.20.80 8 472 5.1E-204 T 13-10-2018 RA13_19530 978b320ac33dcbc79fca91346fad3229 564 Gene3D G3DSA:2.60.40.1180 481 564 2.0E-22 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RA13_19530 978b320ac33dcbc79fca91346fad3229 564 Gene3D G3DSA:3.90.400.10 108 178 5.1E-204 T 13-10-2018 RA13_19530 978b320ac33dcbc79fca91346fad3229 564 SUPERFAMILY SSF51445 6 475 7.29E-159 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_19530 978b320ac33dcbc79fca91346fad3229 564 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 8 559 2.0E-270 T 13-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 RA13_19530 978b320ac33dcbc79fca91346fad3229 564 Pfam PF00128 Alpha amylase, catalytic domain 31 377 1.7E-130 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_19530 978b320ac33dcbc79fca91346fad3229 564 Pfam PF16657 Maltogenic Amylase, C-terminal domain 480 554 9.0E-9 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal RA13_19530 978b320ac33dcbc79fca91346fad3229 564 SUPERFAMILY SSF51011 480 560 1.08E-17 T 13-10-2018 RA13_19530 978b320ac33dcbc79fca91346fad3229 564 SMART SM00642 16 419 1.9E-162 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 Gene3D G3DSA:3.30.565.10 142 319 3.3E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 SUPERFAMILY SSF55874 158 321 4.64E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 SMART SM00387 213 325 1.9E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 214 321 2.6E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 251 265 4.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 285 303 4.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 269 279 4.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_02630 3569ac5e4ee9dd6560a01b66a65510e8 325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 322 4.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RA13_05750 9f0557a7cd9a10eb7ee55ef87f881cdd 618 Gene3D G3DSA:3.40.720.10 236 545 1.5E-73 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_05750 9f0557a7cd9a10eb7ee55ef87f881cdd 618 PIRSF PIRSF005091 1 618 2.5E-177 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like RA13_05750 9f0557a7cd9a10eb7ee55ef87f881cdd 618 Pfam PF00884 Sulfatase 243 535 1.6E-36 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RA13_05750 9f0557a7cd9a10eb7ee55ef87f881cdd 618 SUPERFAMILY SSF53649 241 616 2.62E-68 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_08755 de97c1629485df207d61fee8db14b272 102 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 2.5E-41 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08755 de97c1629485df207d61fee8db14b272 102 SUPERFAMILY SSF141091 1 101 9.03E-38 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08755 de97c1629485df207d61fee8db14b272 102 ProSitePatterns PS01169 Ribosomal protein L21 signature. 71 93 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_08755 de97c1629485df207d61fee8db14b272 102 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 26.572 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08755 de97c1629485df207d61fee8db14b272 102 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 2.6E-39 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_06040 25571a8a64927c46100a9e65651d3b5c 118 SUPERFAMILY SSF52833 4 117 3.41E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_06040 25571a8a64927c46100a9e65651d3b5c 118 Gene3D G3DSA:3.40.30.10 1 116 7.2E-46 T 13-10-2018 RA13_06040 25571a8a64927c46100a9e65651d3b5c 118 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 117 6.2E-35 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR RA13_06040 25571a8a64927c46100a9e65651d3b5c 118 Pfam PF03960 ArsC family 6 115 2.7E-16 T 13-10-2018 IPR006660 Arsenate reductase-like RA13_10630 cfb36354624d1be401ba4154df8578c1 255 Gene3D G3DSA:1.10.10.10 179 253 1.1E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10630 cfb36354624d1be401ba4154df8578c1 255 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 61 74 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 Gene3D G3DSA:1.10.10.10 105 160 4.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10630 cfb36354624d1be401ba4154df8578c1 255 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 30 250 5.0E-88 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 PIRSF PIRSF000770 5 255 1.4E-35 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 Pfam PF04539 Sigma-70 region 3 115 183 1.8E-13 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 Pfam PF04545 Sigma-70, region 4 199 247 4.1E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 PRINTS PR00046 Major sigma-70 factor signature 235 246 2.6E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 PRINTS PR00046 Major sigma-70 factor signature 220 235 2.6E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 PRINTS PR00046 Major sigma-70 factor signature 203 215 2.6E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 PRINTS PR00046 Major sigma-70 factor signature 85 93 2.6E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 PRINTS PR00046 Major sigma-70 factor signature 61 74 2.6E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 TIGRFAM TIGR02885 spore_sigF: RNA polymerase sigma-F factor 22 249 1.4E-113 T 13-10-2018 IPR014236 RNA polymerase sigma-F type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 Gene3D G3DSA:1.10.601.10 2 104 2.3E-28 T 13-10-2018 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 250 1.8E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 Pfam PF04542 Sigma-70 region 2 37 104 1.2E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 SUPERFAMILY SSF88659 171 250 5.05E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_10630 cfb36354624d1be401ba4154df8578c1 255 SUPERFAMILY SSF88659 109 184 6.54E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_10630 cfb36354624d1be401ba4154df8578c1 255 SUPERFAMILY SSF88946 7 105 3.27E-34 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RA13_10630 cfb36354624d1be401ba4154df8578c1 255 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 220 246 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RA13_16085 d05ac2522dab5fb36f073fcd04bf2c4f 180 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 164 180 1.1E-4 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_16085 d05ac2522dab5fb36f073fcd04bf2c4f 180 SUPERFAMILY SSF52833 5 179 5.08E-58 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_16085 d05ac2522dab5fb36f073fcd04bf2c4f 180 Pfam PF00578 AhpC/TSA family 6 141 1.5E-38 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_16085 d05ac2522dab5fb36f073fcd04bf2c4f 180 PIRSF PIRSF000239 1 180 6.2E-59 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_16085 d05ac2522dab5fb36f073fcd04bf2c4f 180 Gene3D G3DSA:3.40.30.10 1 180 2.9E-73 T 13-10-2018 RA13_11415 f373509c08fa4806b9c01b81543861e4 437 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 332 352 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RA13_11415 f373509c08fa4806b9c01b81543861e4 437 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 5 415 1.7E-142 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RA13_11415 f373509c08fa4806b9c01b81543861e4 437 Pfam PF00860 Permease family 7 385 4.1E-119 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RA13_11415 f373509c08fa4806b9c01b81543861e4 437 TIGRFAM TIGR03173 pbuX: xanthine permease 11 417 5.3E-164 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 RA13_03100 e782666e748e43bb56f305baad9ec26b 282 SUPERFAMILY SSF88713 80 262 1.42E-42 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_03100 e782666e748e43bb56f305baad9ec26b 282 Gene3D G3DSA:3.20.20.370 61 279 3.6E-67 T 13-10-2018 RA13_03100 e782666e748e43bb56f305baad9ec26b 282 Pfam PF01522 Polysaccharide deacetylase 116 241 3.4E-35 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_06775 5c00ad987e4034057dfe174dc343989c 86 SUPERFAMILY SSF116922 4 82 7.06E-28 T 13-10-2018 IPR023162 Apc36109-like domain superfamily RA13_06775 5c00ad987e4034057dfe174dc343989c 86 ProDom PD062625 YUGE 9 85 3.0E-26 T 13-10-2018 IPR015053 Protein of unknown function DUF1871 RA13_06775 5c00ad987e4034057dfe174dc343989c 86 Gene3D G3DSA:1.10.340.20 1 86 7.3E-32 T 13-10-2018 IPR023162 Apc36109-like domain superfamily RA13_06775 5c00ad987e4034057dfe174dc343989c 86 Pfam PF08958 Domain of unknown function (DUF1871) 9 85 1.8E-35 T 13-10-2018 IPR015053 Protein of unknown function DUF1871 RA13_02660 e8572d66bd920d6204a248949d5707db 121 SUPERFAMILY SSF50814 1 119 2.26E-61 T 13-10-2018 IPR012674 Calycin RA13_02660 e8572d66bd920d6204a248949d5707db 121 Gene3D G3DSA:2.40.128.20 17 112 1.9E-53 T 13-10-2018 IPR012674 Calycin RA13_02660 e8572d66bd920d6204a248949d5707db 121 Pfam PF11631 Protein of unknown function (DUF3255) 1 119 2.5E-65 T 13-10-2018 IPR021664 Protein of unknown function DUF3255 RA13_07890 2211bf49bb3d6d252e649c0518cf81ef 148 SUPERFAMILY SSF46785 19 146 5.75E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_07890 2211bf49bb3d6d252e649c0518cf81ef 148 SMART SM00347 38 135 5.8E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_07890 2211bf49bb3d6d252e649c0518cf81ef 148 Gene3D G3DSA:1.10.10.10 3 148 1.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07890 2211bf49bb3d6d252e649c0518cf81ef 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 6.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_07890 2211bf49bb3d6d252e649c0518cf81ef 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 6.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_07890 2211bf49bb3d6d252e649c0518cf81ef 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 125 145 6.6E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_07890 2211bf49bb3d6d252e649c0518cf81ef 148 Pfam PF12802 MarR family 45 94 9.0E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_08675 3bad02ed2f5d5acd24b62a87d40fc0e6 790 Pfam PF01476 LysM domain 741 783 3.9E-5 T 13-10-2018 IPR018392 LysM domain RA13_08675 3bad02ed2f5d5acd24b62a87d40fc0e6 790 Gene3D G3DSA:3.10.350.10 730 790 2.9E-7 T 13-10-2018 IPR036779 LysM domain superfamily RA13_08675 3bad02ed2f5d5acd24b62a87d40fc0e6 790 SMART SM00257 739 783 2.1E-4 T 13-10-2018 IPR018392 LysM domain RA13_08675 3bad02ed2f5d5acd24b62a87d40fc0e6 790 SUPERFAMILY SSF54106 739 783 2.09E-5 T 13-10-2018 RA13_03860 99f29ce8354586f0e802c5a32d0526f6 320 Hamap MF_00606 UV DNA damage endonuclease [uvsE]. 12 304 40.525 T 13-10-2018 IPR023520 UV-endonuclease UvdE, bacterial GO:0004519|GO:0009411 RA13_03860 99f29ce8354586f0e802c5a32d0526f6 320 SUPERFAMILY SSF51658 84 281 5.12E-19 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_03860 99f29ce8354586f0e802c5a32d0526f6 320 Gene3D G3DSA:3.20.20.150 2 307 1.9E-93 T 13-10-2018 RA13_03860 99f29ce8354586f0e802c5a32d0526f6 320 Pfam PF03851 UV-endonuclease UvdE 5 274 1.4E-117 T 13-10-2018 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 RA13_03860 99f29ce8354586f0e802c5a32d0526f6 320 TIGRFAM TIGR00629 uvde: UV damage endonuclease UvdE 1 303 8.3E-138 T 13-10-2018 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 RA13_00350 d32b4c435b64d4493a88f4eca1af998d 294 SMART SM00342 21 104 3.3E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_00350 d32b4c435b64d4493a88f4eca1af998d 294 Gene3D G3DSA:1.10.10.60 1 57 1.0E-19 T 13-10-2018 RA13_00350 d32b4c435b64d4493a88f4eca1af998d 294 Pfam PF12833 Helix-turn-helix domain 27 105 3.1E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_00350 d32b4c435b64d4493a88f4eca1af998d 294 Gene3D G3DSA:2.60.120.260 112 272 1.6E-19 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily RA13_00350 d32b4c435b64d4493a88f4eca1af998d 294 SUPERFAMILY SSF46689 5 55 3.13E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_00350 d32b4c435b64d4493a88f4eca1af998d 294 SUPERFAMILY SSF46689 57 105 2.55E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_00350 d32b4c435b64d4493a88f4eca1af998d 294 Gene3D G3DSA:1.10.10.60 58 111 1.8E-14 T 13-10-2018 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 Pfam PF08279 HTH domain 7 60 3.8E-15 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 87 324 3.2E-86 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 SUPERFAMILY SSF55681 72 277 1.16E-62 T 13-10-2018 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 Gene3D G3DSA:1.10.10.10 2 64 7.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 9 77 3.5E-27 T 13-10-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 Pfam PF02237 Biotin protein ligase C terminal domain 280 324 1.1E-9 T 13-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 Gene3D G3DSA:3.30.930.10 69 277 7.7E-69 T 13-10-2018 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 SUPERFAMILY SSF46785 4 62 7.58E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 8 325 38.096 T 13-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 Gene3D G3DSA:2.30.30.100 280 325 2.6E-6 T 13-10-2018 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 Pfam PF03099 Biotin/lipoate A/B protein ligase family 91 214 2.9E-19 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RA13_11210 020dcb2eecfdd6fb82b72958411ad5bb 327 SUPERFAMILY SSF50037 281 324 8.24E-5 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal RA13_19660 42e60c46f2a7bd2451d2ef09c94df60d 265 SUPERFAMILY SSF52540 4 231 3.15E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19660 42e60c46f2a7bd2451d2ef09c94df60d 265 Pfam PF00005 ABC transporter 20 167 1.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19660 42e60c46f2a7bd2451d2ef09c94df60d 265 SMART SM00382 28 217 3.4E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19660 42e60c46f2a7bd2451d2ef09c94df60d 265 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19660 42e60c46f2a7bd2451d2ef09c94df60d 265 Gene3D G3DSA:3.40.50.300 2 255 1.4E-67 T 13-10-2018 RA13_19220 1b512e7d452d3ff8aa85265478afaaf3 194 Gene3D G3DSA:3.40.109.10 5 193 1.1E-42 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_19220 1b512e7d452d3ff8aa85265478afaaf3 194 Pfam PF00881 Nitroreductase family 17 174 1.1E-25 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_19220 1b512e7d452d3ff8aa85265478afaaf3 194 SUPERFAMILY SSF55469 12 193 1.16E-38 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_19220 1b512e7d452d3ff8aa85265478afaaf3 194 PIRSF PIRSF000232 8 194 3.9E-48 T 13-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like RA13_21260 ac5bb7e439ffd36d159453f7d4646e2f 67 Gene3D G3DSA:1.10.260.40 1 63 1.1E-23 T 13-10-2018 RA13_21260 ac5bb7e439ffd36d159453f7d4646e2f 67 SUPERFAMILY SSF47413 3 61 6.76E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_21260 ac5bb7e439ffd36d159453f7d4646e2f 67 Pfam PF01381 Helix-turn-helix 5 59 3.9E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_21260 ac5bb7e439ffd36d159453f7d4646e2f 67 SMART SM00530 4 59 8.0E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_07505 0d3d328bb37948d7f92b56d78247a54e 325 PRINTS PR02026 YtrC/YtrD probable ABC transporter permease signature 238 252 2.7E-40 T 13-10-2018 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD RA13_07505 0d3d328bb37948d7f92b56d78247a54e 325 PRINTS PR02026 YtrC/YtrD probable ABC transporter permease signature 169 181 2.7E-40 T 13-10-2018 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD RA13_07505 0d3d328bb37948d7f92b56d78247a54e 325 PRINTS PR02026 YtrC/YtrD probable ABC transporter permease signature 152 166 2.7E-40 T 13-10-2018 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD RA13_07505 0d3d328bb37948d7f92b56d78247a54e 325 PRINTS PR02026 YtrC/YtrD probable ABC transporter permease signature 258 277 2.7E-40 T 13-10-2018 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD RA13_07505 0d3d328bb37948d7f92b56d78247a54e 325 PRINTS PR02026 YtrC/YtrD probable ABC transporter permease signature 92 106 2.7E-40 T 13-10-2018 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD RA13_04400 b9f93617c146254548b168433f718873 599 Pfam PF14449 Pre-toxin TG 255 320 4.6E-19 T 13-10-2018 IPR027797 Pre-toxin TG domain RA13_04400 b9f93617c146254548b168433f718873 599 Pfam PF14431 YwqJ-like deaminase 467 588 1.3E-21 T 13-10-2018 IPR025968 YwqJ-like deaminase RA13_04400 b9f93617c146254548b168433f718873 599 Pfam PF04740 LXG domain of WXG superfamily 3 201 2.9E-50 T 13-10-2018 IPR006829 LXG domain RA13_09280 5f3a7682959a0d131f5603133dd00445 294 Pfam PF03466 LysR substrate binding domain 93 282 2.1E-29 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_09280 5f3a7682959a0d131f5603133dd00445 294 SUPERFAMILY SSF53850 93 287 9.41E-29 T 13-10-2018 RA13_09280 5f3a7682959a0d131f5603133dd00445 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 1.2E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09280 5f3a7682959a0d131f5603133dd00445 294 SUPERFAMILY SSF46785 1 85 4.31E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_09280 5f3a7682959a0d131f5603133dd00445 294 Gene3D G3DSA:3.40.190.290 92 290 2.5E-34 T 13-10-2018 RA13_09280 5f3a7682959a0d131f5603133dd00445 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09280 5f3a7682959a0d131f5603133dd00445 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09280 5f3a7682959a0d131f5603133dd00445 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_09280 5f3a7682959a0d131f5603133dd00445 294 Gene3D G3DSA:1.10.10.10 1 84 2.9E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_19890 c0f0fda68474c4f0d93335a8f716f377 344 Pfam PF07470 Glycosyl Hydrolase Family 88 19 338 1.3E-97 T 13-10-2018 IPR010905 Glycosyl hydrolase, family 88 RA13_19890 c0f0fda68474c4f0d93335a8f716f377 344 SUPERFAMILY SSF48208 20 338 1.02E-56 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RA13_19890 c0f0fda68474c4f0d93335a8f716f377 344 Gene3D G3DSA:1.50.10.10 4 339 2.3E-88 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RA13_17645 3517f052e357e90543fd0ed752151be2 412 PIRSF PIRSF000447 1 412 5.5E-191 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 RA13_17645 3517f052e357e90543fd0ed752151be2 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 246 3.2E-61 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RA13_17645 3517f052e357e90543fd0ed752151be2 412 SMART SM00825 Beta-ketoacyl synthase 6 412 4.3E-16 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RA13_17645 3517f052e357e90543fd0ed752151be2 412 Gene3D G3DSA:3.40.47.10 1 255 1.6E-111 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_17645 3517f052e357e90543fd0ed752151be2 412 SUPERFAMILY SSF53901 4 251 1.09E-76 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_17645 3517f052e357e90543fd0ed752151be2 412 Gene3D G3DSA:3.40.47.10 256 400 1.1E-58 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_17645 3517f052e357e90543fd0ed752151be2 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 368 4.4E-41 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RA13_17645 3517f052e357e90543fd0ed752151be2 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 409 1.2E-203 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 RA13_17645 3517f052e357e90543fd0ed752151be2 412 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site RA13_17645 3517f052e357e90543fd0ed752151be2 412 SUPERFAMILY SSF53901 214 411 5.76E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_09890 9cded70184ecd1a2e4f9d67b73ef34c1 67 SUPERFAMILY SSF158379 1 60 9.55E-22 T 13-10-2018 IPR023164 YqgQ-like superfamily RA13_09890 9cded70184ecd1a2e4f9d67b73ef34c1 67 Gene3D G3DSA:1.10.287.760 1 67 3.6E-28 T 13-10-2018 IPR023164 YqgQ-like superfamily RA13_09890 9cded70184ecd1a2e4f9d67b73ef34c1 67 Pfam PF06014 Bacterial protein of unknown function (DUF910) 1 60 3.5E-26 T 13-10-2018 IPR009256 Protein of unknown function DUF910 RA13_05415 c2a5f38b6b68e4bdb57a5cbf27694c58 447 Pfam PF00324 Amino acid permease 16 423 4.2E-93 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_05415 c2a5f38b6b68e4bdb57a5cbf27694c58 447 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RA13_05415 c2a5f38b6b68e4bdb57a5cbf27694c58 447 Gene3D G3DSA:1.20.1740.10 6 447 2.9E-68 T 13-10-2018 RA13_05415 c2a5f38b6b68e4bdb57a5cbf27694c58 447 PIRSF PIRSF006060 1 446 1.4E-71 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_20400 4e6ee88d12a6323043d8e236e25e8c6a 244 Pfam PF02517 CAAX protease self-immunity 130 214 3.3E-17 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RA13_06475 58734a29ced9b3fc1c5dd9d0509556d4 198 Gene3D G3DSA:3.90.420.10 6 196 3.3E-46 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RA13_06475 58734a29ced9b3fc1c5dd9d0509556d4 198 SUPERFAMILY SSF56524 14 198 1.7E-60 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 RA13_06475 58734a29ced9b3fc1c5dd9d0509556d4 198 Pfam PF00174 Oxidoreductase molybdopterin binding domain 32 178 1.0E-36 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 Gene3D G3DSA:3.20.80.10 128 290 5.0E-42 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 Pfam PF12833 Helix-turn-helix domain 28 105 8.3E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 SUPERFAMILY SSF46689 7 55 2.11E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 SMART SM00871 128 288 1.9E-36 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 Gene3D G3DSA:1.10.10.60 58 117 2.9E-13 T 13-10-2018 RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 SMART SM00342 21 104 1.3E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 SUPERFAMILY SSF46689 57 115 2.2E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 Gene3D G3DSA:1.10.10.60 4 57 7.0E-15 T 13-10-2018 RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 SUPERFAMILY SSF55136 128 290 8.11E-32 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RA13_11635 8833ee2b835bde9bd0d98f249063bcac 290 Pfam PF06445 GyrI-like small molecule binding domain 128 287 1.6E-31 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain RA13_04640 3365e7766dff5d2faa6a56e494d06b58 483 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 13 472 1.9E-170 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 RA13_04640 3365e7766dff5d2faa6a56e494d06b58 483 PIRSF PIRSF005690 1 483 1.3E-182 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 RA13_05235 c3693e510227d2d052335fa681ac7bca 194 SUPERFAMILY SSF46689 4 82 5.08E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_05235 c3693e510227d2d052335fa681ac7bca 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_05235 c3693e510227d2d052335fa681ac7bca 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_05235 c3693e510227d2d052335fa681ac7bca 194 Gene3D G3DSA:1.10.357.10 1 194 1.8E-78 T 13-10-2018 RA13_05235 c3693e510227d2d052335fa681ac7bca 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 7.8E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_05235 c3693e510227d2d052335fa681ac7bca 194 SUPERFAMILY SSF48498 80 191 1.7E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_01795 79de01a53a75b444c7bf4079ebf6d999 71 SUPERFAMILY SSF55174 4 67 7.65E-19 T 13-10-2018 RA13_01795 79de01a53a75b444c7bf4079ebf6d999 71 Gene3D G3DSA:3.10.290.10 1 70 1.7E-24 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_01795 79de01a53a75b444c7bf4079ebf6d999 71 Pfam PF13275 S4 domain 5 69 9.9E-29 T 13-10-2018 RA13_01795 79de01a53a75b444c7bf4079ebf6d999 71 TIGRFAM TIGR02988 YaaA_near_RecF: S4 domain protein YaaA 5 63 1.1E-30 T 13-10-2018 IPR014330 RNA-binding S4-related,YaaA RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 SUPERFAMILY SSF64518 1 316 4.32E-89 T 13-10-2018 RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 Pfam PF00700 Bacterial flagellin C-terminal helical region 231 315 3.6E-32 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 147 2.0E-40 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 Gene3D G3DSA:1.20.1330.10 53 267 5.0E-55 T 13-10-2018 RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 PRINTS PR00207 Flagellin signature 74 93 4.2E-18 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 PRINTS PR00207 Flagellin signature 110 133 4.2E-18 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 PRINTS PR00207 Flagellin signature 35 52 4.2E-18 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 RA13_04850 144634cfe600c8f69b03cf07440e66b5 316 Gene3D G3DSA:1.10.8.410 268 316 2.3E-28 T 13-10-2018 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 240 4.7E-75 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 Pfam PF01416 tRNA pseudouridine synthase 8 104 4.8E-9 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 Pfam PF01416 tRNA pseudouridine synthase 144 246 1.2E-33 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 PIRSF PIRSF001430 1 247 1.5E-84 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 Gene3D G3DSA:3.30.70.660 107 244 6.9E-50 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 SUPERFAMILY SSF55120 1 247 6.33E-88 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 Gene3D G3DSA:3.30.70.580 1 106 6.0E-34 T 13-10-2018 RA13_00885 644fbe9ad26d2cc2e27fb1009a35a14d 247 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 245 36.572 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RA13_11105 98198b797fc54dab2f478226c950ea5c 400 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 56 379 3.0E-49 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RA13_11105 98198b797fc54dab2f478226c950ea5c 400 Gene3D G3DSA:3.40.50.1100 12 208 3.4E-182 T 13-10-2018 RA13_11105 98198b797fc54dab2f478226c950ea5c 400 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 9 390 4.1E-185 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_11105 98198b797fc54dab2f478226c950ea5c 400 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 4 392 51.362 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_11105 98198b797fc54dab2f478226c950ea5c 400 SUPERFAMILY SSF53686 5 390 5.11E-139 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RA13_11105 98198b797fc54dab2f478226c950ea5c 400 PIRSF PIRSF001413 1 398 3.0E-159 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_11105 98198b797fc54dab2f478226c950ea5c 400 Gene3D G3DSA:3.40.50.1100 56 385 3.4E-182 T 13-10-2018 RA13_11105 98198b797fc54dab2f478226c950ea5c 400 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 83 97 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 Gene3D G3DSA:3.40.50.1260 7 391 8.8E-166 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PIRSF PIRSF000724 1 394 2.6E-160 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 Gene3D G3DSA:3.40.50.1260 169 383 8.8E-166 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 Pfam PF00162 Phosphoglycerate kinase 6 383 1.9E-164 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 312 337 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 190 209 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 167 189 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 2.0E-98 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 SUPERFAMILY SSF53748 1 393 2.0E-164 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_05455 337e2e60aa00f2685739ddce95bd1f08 394 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 43.188 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RA13_06105 aa041570e21e4bfbf4d15c3033837d09 147 SUPERFAMILY SSF82649 2 142 2.54E-51 T 13-10-2018 RA13_06105 aa041570e21e4bfbf4d15c3033837d09 147 Pfam PF01592 NifU-like N terminal domain 11 128 2.3E-39 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 RA13_06105 aa041570e21e4bfbf4d15c3033837d09 147 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 7 140 2.3E-58 T 13-10-2018 RA13_06105 aa041570e21e4bfbf4d15c3033837d09 147 Gene3D G3DSA:3.90.1010.10 1 147 5.6E-64 T 13-10-2018 RA13_15755 de1f2e46c15fdf78b60c14dbb01a0342 305 Gene3D G3DSA:1.10.357.140 28 189 8.1E-19 T 13-10-2018 RA13_15755 de1f2e46c15fdf78b60c14dbb01a0342 305 Pfam PF01040 UbiA prenyltransferase family 38 288 1.4E-58 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RA13_15755 de1f2e46c15fdf78b60c14dbb01a0342 305 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 23 301 4.5E-98 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RA13_15755 de1f2e46c15fdf78b60c14dbb01a0342 305 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 81 103 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site RA13_15755 de1f2e46c15fdf78b60c14dbb01a0342 305 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 21 304 18.321 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 SMART SM00866 95 234 1.3E-40 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 Gene3D G3DSA:3.40.1410.10 78 241 4.8E-52 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 SUPERFAMILY SSF64288 62 240 2.83E-53 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 Pfam PF07702 UTRA domain 95 233 1.0E-38 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 3.5E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 3.5E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 SMART SM00345 15 74 7.7E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 SUPERFAMILY SSF46785 4 86 1.66E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 Gene3D G3DSA:1.10.10.10 9 77 1.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_04995 86212e509e33d00cbeff6ef96a5daaa4 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 3.6E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 Gene3D G3DSA:1.20.1560.10 13 352 4.5E-109 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 SUPERFAMILY SSF52540 355 602 2.89E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 SMART SM00382 391 577 4.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 Pfam PF00005 ABC transporter 382 531 8.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 Gene3D G3DSA:3.40.50.300 362 605 3.0E-91 T 13-10-2018 RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 SUPERFAMILY SSF90123 37 349 3.79E-88 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RA13_19305 b7d18d3979ab683606a8d81cd675d506 605 Pfam PF00664 ABC transporter transmembrane region 49 320 8.1E-67 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 Pfam PF00772 DnaB-like helicase N terminal domain 10 111 1.7E-35 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 9 442 4.3E-189 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 SMART SM00382 202 391 0.0027 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 Gene3D G3DSA:3.40.50.300 167 454 4.8E-122 T 13-10-2018 RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 SUPERFAMILY SSF52540 183 433 2.1E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 SUPERFAMILY SSF48024 8 119 6.54E-38 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 Gene3D G3DSA:1.10.860.10 1 166 1.1E-65 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RA13_02115 bf7f3ac5e793a60bf7b9d015729b797e 454 Pfam PF03796 DnaB-like helicase C terminal domain 185 440 1.4E-119 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RA13_10880 98b7c037f0b2ae96ddfa85536b6fc1c6 251 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 17 247 40.376 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10880 98b7c037f0b2ae96ddfa85536b6fc1c6 251 ProSitePatterns PS01028 Dehydroquinase class I active site. 114 142 - T 13-10-2018 IPR018508 3-dehydroquinate dehydratase, active site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10880 98b7c037f0b2ae96ddfa85536b6fc1c6 251 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 17 243 2.2E-72 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10880 98b7c037f0b2ae96ddfa85536b6fc1c6 251 Gene3D G3DSA:3.20.20.70 1 250 7.9E-91 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_10880 98b7c037f0b2ae96ddfa85536b6fc1c6 251 Pfam PF01487 Type I 3-dehydroquinase 20 244 3.1E-69 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RA13_10880 98b7c037f0b2ae96ddfa85536b6fc1c6 251 SUPERFAMILY SSF51569 1 248 2.44E-76 T 13-10-2018 RA13_21785 393d0fcb36e59e3e8fa8d79b671e23d7 299 Gene3D G3DSA:3.10.270.10 31 298 1.5E-76 T 13-10-2018 RA13_21785 393d0fcb36e59e3e8fa8d79b671e23d7 299 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 34 298 32.32 T 13-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 RA13_21785 393d0fcb36e59e3e8fa8d79b671e23d7 299 Pfam PF02649 Type I GTP cyclohydrolase folE2 34 293 2.9E-74 T 13-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 RA13_21785 393d0fcb36e59e3e8fa8d79b671e23d7 299 TIGRFAM TIGR00294 TIGR00294: GTP cyclohydrolase 6 294 1.4E-91 T 13-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 RA13_20350 4a4d5e7609ceedf518856441b4010654 355 Gene3D G3DSA:3.40.50.720 160 297 9.0E-123 T 13-10-2018 RA13_20350 4a4d5e7609ceedf518856441b4010654 355 SUPERFAMILY SSF50129 8 180 4.57E-62 T 13-10-2018 IPR011032 GroES-like superfamily RA13_20350 4a4d5e7609ceedf518856441b4010654 355 Pfam PF00107 Zinc-binding dehydrogenase 183 311 1.7E-34 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_20350 4a4d5e7609ceedf518856441b4010654 355 SUPERFAMILY SSF51735 147 315 7.07E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_20350 4a4d5e7609ceedf518856441b4010654 355 Gene3D G3DSA:3.90.180.10 18 336 9.0E-123 T 13-10-2018 RA13_20350 4a4d5e7609ceedf518856441b4010654 355 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RA13_20350 4a4d5e7609ceedf518856441b4010654 355 SMART SM00829 15 349 2.0E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RA13_20350 4a4d5e7609ceedf518856441b4010654 355 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 141 1.1E-34 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_20900 7465124bd45d61625d26cdf7dca1947e 124 Pfam PF01042 Endoribonuclease L-PSP 10 123 2.8E-27 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RA13_20900 7465124bd45d61625d26cdf7dca1947e 124 SUPERFAMILY SSF55298 11 124 1.32E-31 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RA13_20900 7465124bd45d61625d26cdf7dca1947e 124 Gene3D G3DSA:3.30.1330.40 3 124 7.4E-34 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 39 48 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 SUPERFAMILY SSF51905 6 425 9.64E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.4E-9 T 13-10-2018 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 378 2.4E-9 T 13-10-2018 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 SUPERFAMILY SSF56425 231 353 6.73E-31 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 Gene3D G3DSA:1.20.58.100 423 539 4.3E-34 T 13-10-2018 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 396 411 1.9E-6 T 13-10-2018 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.9E-6 T 13-10-2018 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 Gene3D G3DSA:3.90.700.10 258 367 4.4E-124 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 TIGRFAM TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 6 579 1.0E-284 T 13-10-2018 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 SUPERFAMILY SSF46977 443 579 1.44E-44 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 Pfam PF00890 FAD binding domain 6 392 1.6E-87 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 Pfam PF02910 Fumarate reductase flavoprotein C-term 452 579 5.3E-41 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 PIRSF PIRSF000171 343 574 1.4E-16 T 13-10-2018 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 PIRSF PIRSF000171 1 240 4.5E-20 T 13-10-2018 RA13_08500 506e2614f15ee1a80c0b6205409419ad 586 Gene3D G3DSA:3.50.50.60 6 403 4.4E-124 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06090 5ad51009526fb5d94c51637da38c2091 261 SMART SM00382 30 225 6.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_06090 5ad51009526fb5d94c51637da38c2091 261 Gene3D G3DSA:3.40.50.300 5 250 9.9E-55 T 13-10-2018 RA13_06090 5ad51009526fb5d94c51637da38c2091 261 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_06090 5ad51009526fb5d94c51637da38c2091 261 SUPERFAMILY SSF52540 6 232 1.02E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_06090 5ad51009526fb5d94c51637da38c2091 261 Pfam PF00005 ABC transporter 21 173 2.2E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_06090 5ad51009526fb5d94c51637da38c2091 261 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 6 246 8.9E-114 T 13-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 RA13_03005 1c30bb2b835026da92d4ae270765460e 397 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 395 4.9E-51 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RA13_03005 1c30bb2b835026da92d4ae270765460e 397 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 395 1.5E-141 T 13-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 RA13_03005 1c30bb2b835026da92d4ae270765460e 397 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 80 5.1E-18 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RA13_21725 d4309fccf38c47170b6553b87594f729 145 Pfam PF14040 Deoxyribonuclease NucA/NucB 49 134 7.1E-12 T 13-10-2018 IPR029476 Deoxyribonuclease NucA/NucB RA13_05745 75edd06cba5f65a83480c2e602a5302c 308 Pfam PF12728 Helix-turn-helix domain 7 52 2.8E-12 T 13-10-2018 RA13_05745 75edd06cba5f65a83480c2e602a5302c 308 SUPERFAMILY SSF53850 80 296 1.37E-17 T 13-10-2018 RA13_05745 75edd06cba5f65a83480c2e602a5302c 308 SUPERFAMILY SSF46955 7 55 1.78E-5 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_05745 75edd06cba5f65a83480c2e602a5302c 308 Gene3D G3DSA:3.40.190.10 162 261 7.5E-10 T 13-10-2018 RA13_05745 75edd06cba5f65a83480c2e602a5302c 308 Pfam PF12727 PBP superfamily domain 108 270 3.2E-54 T 13-10-2018 IPR024370 PBP domain RA13_05745 75edd06cba5f65a83480c2e602a5302c 308 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 7 53 1.4E-16 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RA13_05745 75edd06cba5f65a83480c2e602a5302c 308 Gene3D G3DSA:1.10.1660.10 4 55 5.3E-10 T 13-10-2018 RA13_03715 fb5e671398bf617e3bdd1c6f4cddf24b 290 SUPERFAMILY SSF52768 4 289 1.73E-85 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily RA13_03715 fb5e671398bf617e3bdd1c6f4cddf24b 290 Gene3D G3DSA:3.40.800.10 18 290 1.2E-94 T 13-10-2018 RA13_03715 fb5e671398bf617e3bdd1c6f4cddf24b 290 PIRSF PIRSF036979 1 290 4.3E-94 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_03715 fb5e671398bf617e3bdd1c6f4cddf24b 290 Pfam PF00491 Arginase family 22 285 8.0E-79 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_03715 fb5e671398bf617e3bdd1c6f4cddf24b 290 TIGRFAM TIGR01230 agmatinase: agmatinase 10 286 3.9E-122 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 RA13_03715 fb5e671398bf617e3bdd1c6f4cddf24b 290 ProSitePatterns PS01053 Arginase family signature. 214 235 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 RA13_19255 cb9c2c00ecb36b992c856896e7501544 518 Pfam PF07690 Major Facilitator Superfamily 19 416 1.6E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_19255 cb9c2c00ecb36b992c856896e7501544 518 SUPERFAMILY SSF103473 12 515 9.42E-68 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_19255 cb9c2c00ecb36b992c856896e7501544 518 PRINTS PR01036 Tetracycline resistance protein TetB signature 77 99 7.9E-5 T 13-10-2018 RA13_19255 cb9c2c00ecb36b992c856896e7501544 518 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 7.9E-5 T 13-10-2018 RA13_19255 cb9c2c00ecb36b992c856896e7501544 518 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 7.9E-5 T 13-10-2018 RA13_19255 cb9c2c00ecb36b992c856896e7501544 518 Gene3D G3DSA:1.20.1720.10 15 222 6.4E-46 T 13-10-2018 RA13_19255 cb9c2c00ecb36b992c856896e7501544 518 Gene3D G3DSA:1.20.1250.20 268 431 7.6E-18 T 13-10-2018 RA13_08445 736052f40290c2dbba69157c54e4e592 562 Gene3D G3DSA:3.30.300.310 455 557 3.3E-31 T 13-10-2018 RA13_08445 736052f40290c2dbba69157c54e4e592 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 468 543 1.0E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_08445 736052f40290c2dbba69157c54e4e592 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_08445 736052f40290c2dbba69157c54e4e592 562 Gene3D G3DSA:3.40.50.12780 13 450 3.6E-131 T 13-10-2018 RA13_08445 736052f40290c2dbba69157c54e4e592 562 Pfam PF00501 AMP-binding enzyme 32 458 3.7E-109 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_08445 736052f40290c2dbba69157c54e4e592 562 SUPERFAMILY SSF56801 22 551 5.1E-154 T 13-10-2018 RA13_14960 9e9e6efb638afa19d6cdef4b6800c4c4 158 Gene3D G3DSA:2.40.50.180 29 138 1.3E-36 T 13-10-2018 RA13_14960 9e9e6efb638afa19d6cdef4b6800c4c4 158 Pfam PF01584 CheW-like domain 11 145 5.3E-31 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RA13_14960 9e9e6efb638afa19d6cdef4b6800c4c4 158 Gene3D G3DSA:2.30.30.40 12 137 1.3E-36 T 13-10-2018 RA13_14960 9e9e6efb638afa19d6cdef4b6800c4c4 158 SMART SM00260 6 143 4.9E-39 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RA13_14960 9e9e6efb638afa19d6cdef4b6800c4c4 158 SUPERFAMILY SSF50341 10 146 5.62E-35 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 SMART SM00116 259 307 8.9E-10 T 13-10-2018 IPR000644 CBS domain RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 SMART SM00116 319 367 1.1E-7 T 13-10-2018 IPR000644 CBS domain RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 12 372 2.0E-181 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 Pfam PF00571 CBS domain 252 297 4.3E-9 T 13-10-2018 IPR000644 CBS domain RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 Pfam PF00571 CBS domain 312 364 3.0E-8 T 13-10-2018 IPR000644 CBS domain RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 Gene3D G3DSA:3.10.580.10 248 373 6.1E-38 T 13-10-2018 RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 SMART SM00382 27 221 4.0E-22 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 SUPERFAMILY SSF52540 1 240 1.14E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 Gene3D G3DSA:3.40.50.300 1 240 2.8E-77 T 13-10-2018 RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 SUPERFAMILY SSF54631 251 374 1.52E-26 T 13-10-2018 RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_05575 b01190017b4e91ed59cb4a8f4772c2ce 381 Pfam PF00005 ABC transporter 19 163 4.1E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 Pfam PF00067 Cytochrome P450 19 370 2.5E-33 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 Gene3D G3DSA:1.10.630.10 4 399 5.9E-124 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 195 217 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 350 361 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 152 167 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 320 335 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 341 350 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 135 151 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 292 319 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 89 100 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00359 B-class P450 signature 275 286 9.6E-53 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 SUPERFAMILY SSF48264 16 399 1.96E-94 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00385 P450 superfamily signature 240 257 6.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00385 P450 superfamily signature 341 350 6.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00385 P450 superfamily signature 275 286 6.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 PRINTS PR00385 P450 superfamily signature 350 361 6.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_07605 6c3dbaa55e00f17860ac50dcf3856a8f 399 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 343 352 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RA13_09365 b2358e3d8ca4eda6f5d3728dbcf3d661 119 Gene3D G3DSA:1.10.10.10 9 119 3.9E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09365 b2358e3d8ca4eda6f5d3728dbcf3d661 119 Pfam PF01638 HxlR-like helix-turn-helix 30 117 8.5E-30 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RA13_09365 b2358e3d8ca4eda6f5d3728dbcf3d661 119 SUPERFAMILY SSF46785 18 114 4.89E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 95 22.283 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 SMART SM00739 2 29 5.3E-7 T 13-10-2018 IPR005824 KOW RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 100 1.2E-29 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 100 3.9E-41 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 Pfam PF00467 KOW motif 5 36 7.3E-10 T 13-10-2018 IPR005824 KOW RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 Gene3D G3DSA:2.30.30.30 1 100 1.4E-42 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RA13_00995 c720c1b7d6d3e20b30ed4f8e2ed0e5d9 103 SUPERFAMILY SSF50104 1 100 2.48E-39 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RA13_20520 5601e3fab765211f475ddb453178c62a 228 Gene3D G3DSA:1.20.120.530 89 225 2.1E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_20520 5601e3fab765211f475ddb453178c62a 228 Gene3D G3DSA:1.10.10.10 7 75 2.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20520 5601e3fab765211f475ddb453178c62a 228 SUPERFAMILY SSF48008 92 224 1.15E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_20520 5601e3fab765211f475ddb453178c62a 228 SMART SM00895 95 219 9.5E-18 T 13-10-2018 IPR011711 GntR, C-terminal RA13_20520 5601e3fab765211f475ddb453178c62a 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20520 5601e3fab765211f475ddb453178c62a 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20520 5601e3fab765211f475ddb453178c62a 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 8.4E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20520 5601e3fab765211f475ddb453178c62a 228 SUPERFAMILY SSF46785 5 78 5.45E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20520 5601e3fab765211f475ddb453178c62a 228 SMART SM00345 15 74 2.3E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_20520 5601e3fab765211f475ddb453178c62a 228 Pfam PF07729 FCD domain 95 217 2.3E-19 T 13-10-2018 IPR011711 GntR, C-terminal RA13_08555 e44b4ca62f0e2ed98698084a3b165d87 281 Pfam PF09557 Domain of unknown function (DUF2382) 153 260 9.2E-30 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 RA13_08555 e44b4ca62f0e2ed98698084a3b165d87 281 Pfam PF11181 Heat induced stress protein YflT 6 110 1.0E-23 T 13-10-2018 IPR025889 General stress protein 17M-like domain RA13_08555 e44b4ca62f0e2ed98698084a3b165d87 281 TIGRFAM TIGR02271 TIGR02271: conserved domain 153 266 2.0E-46 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 RA13_11905 a751cddec1ac7a60d8e19e52add4f7ae 101 SMART SM00530 6 59 9.4E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_11905 a751cddec1ac7a60d8e19e52add4f7ae 101 Gene3D G3DSA:1.10.260.40 3 101 3.0E-16 T 13-10-2018 RA13_11905 a751cddec1ac7a60d8e19e52add4f7ae 101 SUPERFAMILY SSF47413 1 64 5.33E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_11905 a751cddec1ac7a60d8e19e52add4f7ae 101 Pfam PF01381 Helix-turn-helix 7 59 5.3E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_10140 c886654ecad51e12b2a74b7a108e61f9 206 Pfam PF09581 Stage III sporulation protein AF (Spore_III_AF) 12 195 1.7E-40 T 13-10-2018 IPR014245 Sporulation stage III, protein AF RA13_10140 c886654ecad51e12b2a74b7a108e61f9 206 TIGRFAM TIGR02896 spore_III_AF: stage III sporulation protein AF 3 110 2.3E-38 T 13-10-2018 IPR014245 Sporulation stage III, protein AF RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 Pfam PF03466 LysR substrate binding domain 90 291 1.6E-47 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 SUPERFAMILY SSF46785 4 111 4.54E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 4.3E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 Gene3D G3DSA:3.40.190.290 91 293 2.4E-45 T 13-10-2018 RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 Gene3D G3DSA:1.10.10.10 3 90 1.6E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03645 dd2559e91cad62fefdabfefa42a3608d 295 SUPERFAMILY SSF53850 90 294 1.09E-40 T 13-10-2018 RA13_08350 8083ed32cefa8eb7b8ca00d372279022 313 Gene3D G3DSA:1.10.3720.10 68 310 1.2E-61 T 13-10-2018 IPR035906 MetI-like superfamily RA13_08350 8083ed32cefa8eb7b8ca00d372279022 313 SUPERFAMILY SSF161098 72 301 9.03E-53 T 13-10-2018 IPR035906 MetI-like superfamily RA13_08350 8083ed32cefa8eb7b8ca00d372279022 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 301 1.6E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_09840 384932ba2495e3e12ecfcec73b312ff5 268 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 22 268 5.1E-123 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RA13_09840 384932ba2495e3e12ecfcec73b312ff5 268 Pfam PF00005 ABC transporter 39 192 8.9E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_09840 384932ba2495e3e12ecfcec73b312ff5 268 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_09840 384932ba2495e3e12ecfcec73b312ff5 268 Gene3D G3DSA:3.40.50.300 19 266 2.9E-61 T 13-10-2018 RA13_09840 384932ba2495e3e12ecfcec73b312ff5 268 SMART SM00382 46 240 1.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_09840 384932ba2495e3e12ecfcec73b312ff5 268 SUPERFAMILY SSF52540 19 264 4.14E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11150 32d155fcb823a5709ecc2361c7e4ae1f 224 PIRSF PIRSF000032 2 224 5.2E-104 T 13-10-2018 RA13_11150 32d155fcb823a5709ecc2361c7e4ae1f 224 Pfam PF00033 Cytochrome b/b6/petB 40 219 7.7E-49 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 RA13_11150 32d155fcb823a5709ecc2361c7e4ae1f 224 SUPERFAMILY SSF81342 6 224 4.26E-61 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RA13_11150 32d155fcb823a5709ecc2361c7e4ae1f 224 Gene3D G3DSA:1.20.810.10 1 224 3.5E-89 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 RA13_16685 b21f4de3721c326eb5e0849f4ea04a17 149 Pfam PF01047 MarR family 41 98 4.4E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16685 b21f4de3721c326eb5e0849f4ea04a17 149 Gene3D G3DSA:1.10.10.10 3 149 2.5E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16685 b21f4de3721c326eb5e0849f4ea04a17 149 SUPERFAMILY SSF46785 4 146 3.29E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_16685 b21f4de3721c326eb5e0849f4ea04a17 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 57 73 5.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16685 b21f4de3721c326eb5e0849f4ea04a17 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 5.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16685 b21f4de3721c326eb5e0849f4ea04a17 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 5.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_16685 b21f4de3721c326eb5e0849f4ea04a17 149 SMART SM00347 33 131 3.1E-22 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 SMART SM00876 231 321 2.6E-34 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 SUPERFAMILY SSF102114 16 320 8.11E-71 T 13-10-2018 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 Gene3D G3DSA:3.20.20.70 17 324 4.4E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 231 320 1.7E-14 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 TIGRFAM TIGR00433 bioB: biotin synthase 27 320 4.5E-119 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 SMART SM00729 55 263 1.5E-36 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 Pfam PF04055 Radical SAM superfamily 65 220 1.4E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 Hamap MF_01694 Biotin synthase [bioB]. 15 322 40.883 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RA13_07600 4469ae144f70f5faa84b2cd3a2962c80 335 PIRSF PIRSF001619 1 328 1.1E-127 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RA13_04980 3331b2e1a88af62333966f6fe8667475 64 Pfam PF04024 PspC domain 2 59 9.8E-20 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 SMART SM00448 2 116 5.1E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 5.0E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 5.0E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 5.0E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 Pfam PF00072 Response regulator receiver domain 4 116 4.6E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 Gene3D G3DSA:3.40.50.12740 3 213 7.8E-43 T 13-10-2018 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 SUPERFAMILY SSF46894 144 211 1.67E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 207 6.6E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 SMART SM00421 150 207 2.4E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RA13_06645 37575bc7bda829e32ae46ff36eab67a6 213 SUPERFAMILY SSF52172 1 127 4.13E-21 T 13-10-2018 IPR011006 CheY-like superfamily RA13_18075 71f3a89dc7d3606d5931710605b4bd0c 77 Gene3D G3DSA:4.10.810.10 24 77 2.0E-11 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 RA13_18075 71f3a89dc7d3606d5931710605b4bd0c 77 SMART SM00914 34 70 1.3E-11 T 13-10-2018 IPR014957 IDEAL domain RA13_18075 71f3a89dc7d3606d5931710605b4bd0c 77 Pfam PF08858 IDEAL domain 34 70 9.4E-14 T 13-10-2018 IPR014957 IDEAL domain RA13_00515 ef34b6e318d0f272807057010977c745 134 Pfam PF03788 LrgA family 18 108 9.8E-29 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 RA13_10245 881f29ebc4154414b8c34d86159b71b7 247 Gene3D G3DSA:3.20.20.190 1 243 7.0E-77 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_10245 881f29ebc4154414b8c34d86159b71b7 247 SUPERFAMILY SSF51695 2 238 9.42E-70 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_10245 881f29ebc4154414b8c34d86159b71b7 247 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 235 9.2E-51 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RA13_02685 dec24f82e01e1c06c010ae8f3d31b154 351 Pfam PF04346 Ethanolamine utilisation protein, EutH 3 350 1.2E-137 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 RA13_02685 dec24f82e01e1c06c010ae8f3d31b154 351 PIRSF PIRSF019466 1 351 2.2E-149 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 RA13_01050 a3cfa3c791928ae0d47a61ed8350acdb 209 Pfam PF00297 Ribosomal protein L3 100 181 1.1E-16 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01050 a3cfa3c791928ae0d47a61ed8350acdb 209 Gene3D G3DSA:2.40.30.10 131 209 1.7E-17 T 13-10-2018 RA13_01050 a3cfa3c791928ae0d47a61ed8350acdb 209 SUPERFAMILY SSF50447 1 207 8.56E-81 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RA13_01050 a3cfa3c791928ae0d47a61ed8350acdb 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 203 2.8E-86 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_01050 a3cfa3c791928ae0d47a61ed8350acdb 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site RA13_01050 a3cfa3c791928ae0d47a61ed8350acdb 209 Gene3D G3DSA:2.40.50.620 33 96 7.3E-15 T 13-10-2018 RA13_01050 a3cfa3c791928ae0d47a61ed8350acdb 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 206 39.105 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15035 afb2c8057de0339d3554114dff58a186 71 Pfam PF06289 Flagellar protein (FlbD) 1 58 1.2E-26 T 13-10-2018 IPR009384 Swarming motility protein SwrD-like RA13_07745 aa62bac57cc3fb409c2efbd4b89c70bf 105 Pfam PF03413 Peptidase propeptide and YPEB domain 29 99 1.9E-8 T 13-10-2018 IPR025711 PepSY domain RA13_01370 233ac765028c26e6c6354d56d9131964 472 Gene3D G3DSA:1.20.59.30 244 329 1.3E-29 T 13-10-2018 RA13_01370 233ac765028c26e6c6354d56d9131964 472 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 385 430 2.8E-20 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RA13_01370 233ac765028c26e6c6354d56d9131964 472 Gene3D G3DSA:3.40.50.620 6 236 1.6E-66 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_01370 233ac765028c26e6c6354d56d9131964 472 SUPERFAMILY SSF82829 215 322 1.83E-11 T 13-10-2018 RA13_01370 233ac765028c26e6c6354d56d9131964 472 SUPERFAMILY SSF52402 8 235 5.59E-53 T 13-10-2018 RA13_01370 233ac765028c26e6c6354d56d9131964 472 SUPERFAMILY SSF56037 376 443 9.42E-18 T 13-10-2018 RA13_01370 233ac765028c26e6c6354d56d9131964 472 Pfam PF01171 PP-loop family 20 202 5.3E-60 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 RA13_01370 233ac765028c26e6c6354d56d9131964 472 SMART SM00977 385 460 1.5E-24 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RA13_01370 233ac765028c26e6c6354d56d9131964 472 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 20 206 2.7E-59 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RA13_01370 233ac765028c26e6c6354d56d9131964 472 Pfam PF09179 TilS substrate binding domain 256 323 4.2E-6 T 13-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RA13_01370 233ac765028c26e6c6354d56d9131964 472 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 11 317 24.39 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RA13_01370 233ac765028c26e6c6354d56d9131964 472 Pfam PF11734 TilS substrate C-terminal domain 385 443 9.2E-16 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RA13_02835 c8c3b81e12a29c558c58775f8aafa2db 148 PRINTS PR01438 Universal stress protein signature 126 148 1.6E-22 T 13-10-2018 IPR006015 Universal stress protein A RA13_02835 c8c3b81e12a29c558c58775f8aafa2db 148 PRINTS PR01438 Universal stress protein signature 2 20 1.6E-22 T 13-10-2018 IPR006015 Universal stress protein A RA13_02835 c8c3b81e12a29c558c58775f8aafa2db 148 PRINTS PR01438 Universal stress protein signature 108 120 1.6E-22 T 13-10-2018 IPR006015 Universal stress protein A RA13_02835 c8c3b81e12a29c558c58775f8aafa2db 148 Gene3D G3DSA:3.40.50.620 1 148 5.1E-42 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_02835 c8c3b81e12a29c558c58775f8aafa2db 148 SUPERFAMILY SSF52402 2 148 5.02E-40 T 13-10-2018 RA13_02835 c8c3b81e12a29c558c58775f8aafa2db 148 Pfam PF00582 Universal stress protein family 1 148 2.7E-35 T 13-10-2018 IPR006016 UspA RA13_02835 c8c3b81e12a29c558c58775f8aafa2db 148 PIRSF PIRSF006276 1 148 7.0E-18 T 13-10-2018 IPR006015 Universal stress protein A RA13_21470 e7aef3bdc8b7f80e4074c74ff8c91a47 370 Gene3D G3DSA:1.25.40.10 1 370 2.2E-90 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_21470 e7aef3bdc8b7f80e4074c74ff8c91a47 370 Pfam PF13424 Tetratricopeptide repeat 145 203 3.3E-7 T 13-10-2018 RA13_21470 e7aef3bdc8b7f80e4074c74ff8c91a47 370 SUPERFAMILY SSF48452 109 260 2.47E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_21470 e7aef3bdc8b7f80e4074c74ff8c91a47 370 SMART SM00028 214 247 1.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_21470 e7aef3bdc8b7f80e4074c74ff8c91a47 370 SMART SM00028 133 166 16.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_21470 e7aef3bdc8b7f80e4074c74ff8c91a47 370 SMART SM00028 174 207 390.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_15170 ccea1b0292a2508d94923629b742359d 243 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 234 4.9E-109 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RA13_15170 ccea1b0292a2508d94923629b742359d 243 PIRSF PIRSF000386 1 243 4.6E-106 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RA13_15170 ccea1b0292a2508d94923629b742359d 243 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 243 114.826 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RA13_15170 ccea1b0292a2508d94923629b742359d 243 Gene3D G3DSA:1.10.1270.20 165 243 8.5E-34 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RA13_15170 ccea1b0292a2508d94923629b742359d 243 SUPERFAMILY SSF75217 1 242 7.85E-104 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RA13_15170 ccea1b0292a2508d94923629b742359d 243 Gene3D G3DSA:3.40.1280.10 1 164 2.8E-70 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RA13_15170 ccea1b0292a2508d94923629b742359d 243 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 1.6E-76 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 SUPERFAMILY SSF109755 334 538 1.05E-51 T 13-10-2018 RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 Pfam PF01895 PhoU domain 348 433 2.6E-10 T 13-10-2018 IPR026022 PhoU domain RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 Pfam PF01895 PhoU domain 452 536 5.9E-19 T 13-10-2018 IPR026022 PhoU domain RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 8 316 2.1E-73 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 Pfam PF02690 Na+/Pi-cotransporter 147 259 5.9E-19 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 Pfam PF02690 Na+/Pi-cotransporter 18 153 1.3E-50 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 Gene3D G3DSA:1.20.58.220 444 541 1.1E-22 T 13-10-2018 IPR038078 PhoU-like domain superfamily RA13_00475 7a108b28c1ef0315a41d0beb8d90966c 541 Gene3D G3DSA:1.20.58.220 341 442 5.3E-15 T 13-10-2018 IPR038078 PhoU-like domain superfamily RA13_02410 7fe0da8506880dad4840d3821c9cd606 187 Gene3D G3DSA:3.40.30.10 1 186 7.2E-58 T 13-10-2018 RA13_02410 7fe0da8506880dad4840d3821c9cd606 187 Pfam PF00578 AhpC/TSA family 4 133 1.4E-31 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_02410 7fe0da8506880dad4840d3821c9cd606 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 6.8E-103 T 13-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RA13_02410 7fe0da8506880dad4840d3821c9cd606 187 PIRSF PIRSF000239 1 187 4.8E-49 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_02410 7fe0da8506880dad4840d3821c9cd606 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 3.3E-5 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_02410 7fe0da8506880dad4840d3821c9cd606 187 SUPERFAMILY SSF52833 1 187 5.04E-53 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 SMART SM00829 14 328 3.5E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 32 89 1.7E-4 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 SUPERFAMILY SSF51735 120 292 1.22E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 Gene3D G3DSA:3.40.50.720 129 297 4.7E-118 T 13-10-2018 RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 Pfam PF00107 Zinc-binding dehydrogenase 162 288 8.5E-17 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 Gene3D G3DSA:3.90.180.10 20 328 4.7E-118 T 13-10-2018 RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 6 330 3.5E-137 T 13-10-2018 IPR014188 Acrylyl-CoA reductase AcuI RA13_18150 e85883221fa20aa1c0750e7ba13a7e64 330 SUPERFAMILY SSF50129 5 147 3.5E-37 T 13-10-2018 IPR011032 GroES-like superfamily RA13_00150 f47149c630f1e8b8d320cf77ba12462e 355 SUPERFAMILY SSF103642 4 24 1.55E-7 T 13-10-2018 RA13_00150 f47149c630f1e8b8d320cf77ba12462e 355 Pfam PF05225 helix-turn-helix, Psq domain 293 341 6.5E-16 T 13-10-2018 IPR007889 DNA binding HTH domain, Psq-type GO:0003677 RA13_00150 f47149c630f1e8b8d320cf77ba12462e 355 Pfam PF02810 SEC-C motif 6 23 1.1E-9 T 13-10-2018 IPR004027 SEC-C motif RA13_00150 f47149c630f1e8b8d320cf77ba12462e 355 Gene3D G3DSA:3.10.450.50 1 26 1.1E-6 T 13-10-2018 RA13_00150 f47149c630f1e8b8d320cf77ba12462e 355 SUPERFAMILY SSF47954 268 345 1.24E-6 T 13-10-2018 IPR036915 Cyclin-like superfamily RA13_03455 c4f55001e0fa833b60cef0bf9468a8ce 122 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 14 87 5.5E-13 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 RA13_03455 c4f55001e0fa833b60cef0bf9468a8ce 122 TIGRFAM TIGR02901 QoxD: cytochrome aa3 quinol oxidase, subunit IV 6 97 3.1E-36 T 13-10-2018 IPR014250 Quinol oxidase subunit IV GO:0016021|GO:0016682|GO:0042773 RA13_07630 2ab129e3f6a6e40ec74d74ea998e663e 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 314 4.5E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_07630 2ab129e3f6a6e40ec74d74ea998e663e 321 SUPERFAMILY SSF161098 77 306 1.96E-47 T 13-10-2018 IPR035906 MetI-like superfamily RA13_07630 2ab129e3f6a6e40ec74d74ea998e663e 321 Gene3D G3DSA:1.10.3720.10 73 321 2.0E-59 T 13-10-2018 IPR035906 MetI-like superfamily RA13_18630 5d8d514cea64726218339d0ab37caeda 362 PIRSF PIRSF001369 1 362 3.4E-134 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type RA13_18630 5d8d514cea64726218339d0ab37caeda 362 Gene3D G3DSA:1.10.580.10 15 343 3.1E-129 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 ProSitePatterns PS00480 Citrate synthase signature. 249 261 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 SUPERFAMILY SSF48256 2 360 5.23E-114 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 Gene3D G3DSA:1.10.230.10 215 317 3.1E-129 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RA13_18630 5d8d514cea64726218339d0ab37caeda 362 Pfam PF00285 Citrate synthase, C-terminal domain 5 352 5.6E-112 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 PRINTS PR00143 Citrate synthase signature 118 131 2.1E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 PRINTS PR00143 Citrate synthase signature 323 337 2.1E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 PRINTS PR00143 Citrate synthase signature 303 319 2.1E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 PRINTS PR00143 Citrate synthase signature 167 182 2.1E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 PRINTS PR00143 Citrate synthase signature 242 262 2.1E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_18630 5d8d514cea64726218339d0ab37caeda 362 PRINTS PR00143 Citrate synthase signature 189 217 2.1E-32 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 RA13_16420 06472bc40216802101b5263895457d60 399 Gene3D G3DSA:3.90.1200.10 122 399 2.8E-111 T 13-10-2018 RA13_16420 06472bc40216802101b5263895457d60 399 SUPERFAMILY SSF56112 11 396 5.94E-97 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_16420 06472bc40216802101b5263895457d60 399 PIRSF PIRSF031134 6 398 2.0E-161 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 RA13_16420 06472bc40216802101b5263895457d60 399 Gene3D G3DSA:3.30.200.20 3 121 2.7E-48 T 13-10-2018 RA13_16420 06472bc40216802101b5263895457d60 399 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 399 195.905 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 RA13_16420 06472bc40216802101b5263895457d60 399 Pfam PF01636 Phosphotransferase enzyme family 37 271 1.1E-15 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RA13_16420 06472bc40216802101b5263895457d60 399 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 38 394 8.2E-175 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 RA13_10955 8bb38575e39fd472b015166c904dcada 449 Pfam PF03413 Peptidase propeptide and YPEB domain 377 433 0.0033 T 13-10-2018 IPR025711 PepSY domain RA13_10955 8bb38575e39fd472b015166c904dcada 449 Pfam PF14620 YpeB sporulation 13 373 2.0E-136 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 RA13_10955 8bb38575e39fd472b015166c904dcada 449 TIGRFAM TIGR02889 spore_YpeB: germination protein YpeB 3 439 5.3E-171 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 RA13_07825 a671991eefeaf05900b4dc985601ffa0 214 Gene3D G3DSA:3.10.580.10 1 152 2.8E-38 T 13-10-2018 RA13_07825 a671991eefeaf05900b4dc985601ffa0 214 SUPERFAMILY SSF54631 1 130 1.77E-28 T 13-10-2018 RA13_07825 a671991eefeaf05900b4dc985601ffa0 214 SMART SM00116 10 58 5.6E-11 T 13-10-2018 IPR000644 CBS domain RA13_07825 a671991eefeaf05900b4dc985601ffa0 214 SMART SM00116 81 128 1.4E-11 T 13-10-2018 IPR000644 CBS domain RA13_07825 a671991eefeaf05900b4dc985601ffa0 214 Pfam PF00571 CBS domain 76 126 8.0E-9 T 13-10-2018 IPR000644 CBS domain RA13_07825 a671991eefeaf05900b4dc985601ffa0 214 Pfam PF00571 CBS domain 4 56 2.2E-13 T 13-10-2018 IPR000644 CBS domain RA13_11225 259dea5cdfb8ebc5085b15f72582b54b 286 Hamap MF_00158 Pantothenate synthetase [panC]. 2 278 37.662 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RA13_11225 259dea5cdfb8ebc5085b15f72582b54b 286 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 279 1.3E-116 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RA13_11225 259dea5cdfb8ebc5085b15f72582b54b 286 SUPERFAMILY SSF52374 1 280 1.2E-99 T 13-10-2018 RA13_11225 259dea5cdfb8ebc5085b15f72582b54b 286 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 86 1.8E-8 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_11225 259dea5cdfb8ebc5085b15f72582b54b 286 Pfam PF02569 Pantoate-beta-alanine ligase 4 277 4.1E-96 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RA13_11225 259dea5cdfb8ebc5085b15f72582b54b 286 Gene3D G3DSA:3.40.50.620 1 177 6.9E-69 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_11225 259dea5cdfb8ebc5085b15f72582b54b 286 Gene3D G3DSA:3.30.1300.10 178 276 1.7E-31 T 13-10-2018 RA13_03225 e073af589794503128392b1337d8b1e5 78 Hamap MF_00565 D-alanyl carrier protein [dltC]. 1 78 51.042 T 13-10-2018 IPR003230 D-alanyl carrier protein GO:0019350|GO:0036370 RA13_03225 e073af589794503128392b1337d8b1e5 78 Pfam PF00550 Phosphopantetheine attachment site 5 72 1.1E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_03225 e073af589794503128392b1337d8b1e5 78 SUPERFAMILY SSF47336 2 76 7.46E-16 T 13-10-2018 IPR036736 ACP-like superfamily RA13_03225 e073af589794503128392b1337d8b1e5 78 TIGRFAM TIGR01688 dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2 4 76 1.3E-41 T 13-10-2018 IPR003230 D-alanyl carrier protein GO:0019350|GO:0036370 RA13_03225 e073af589794503128392b1337d8b1e5 78 Gene3D G3DSA:1.10.1200.10 1 78 1.0E-26 T 13-10-2018 IPR036736 ACP-like superfamily RA13_00935 98acb8725d7386dab50090c9c22e72c2 113 Gene3D G3DSA:2.30.30.30 10 77 1.1E-7 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RA13_00935 98acb8725d7386dab50090c9c22e72c2 113 SUPERFAMILY SSF50104 11 90 5.78E-13 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RA13_14860 488cb3849d561b27af092e10fb9aa5e3 100 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 8 95 3.2E-18 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 RA13_14860 488cb3849d561b27af092e10fb9aa5e3 100 Gene3D G3DSA:3.30.1330.30 1 100 1.1E-40 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_14860 488cb3849d561b27af092e10fb9aa5e3 100 SUPERFAMILY SSF55315 6 99 1.99E-24 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_18575 d83158cc2ddcbcf91ebaa2780ea5fee0 96 ProDom PD065873 YHDK TRANSCRIPTION ANTI-SIGMA-M REPRESSOR TRANSMEMBRANE MEMBRANE PROBABLE REGULATION FACTOR 1 96 3.0E-42 T 13-10-2018 IPR020496 Probable anti-sigma M factor YhdK RA13_18575 d83158cc2ddcbcf91ebaa2780ea5fee0 96 Pfam PF17453 Sigma-M inhibitor protein 1 96 5.5E-57 T 13-10-2018 IPR020496 Probable anti-sigma M factor YhdK RA13_00790 c3e5957fa5051d0435c49de28f810cef 422 Pfam PF00202 Aminotransferase class-III 19 416 1.9E-95 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_00790 c3e5957fa5051d0435c49de28f810cef 422 SUPERFAMILY SSF53383 14 420 4.22E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_00790 c3e5957fa5051d0435c49de28f810cef 422 Gene3D G3DSA:3.40.640.10 53 316 5.1E-125 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_00790 c3e5957fa5051d0435c49de28f810cef 422 Gene3D G3DSA:3.90.1150.10 24 408 5.1E-125 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_00790 c3e5957fa5051d0435c49de28f810cef 422 PIRSF PIRSF000521 119 421 1.8E-35 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_00790 c3e5957fa5051d0435c49de28f810cef 422 PIRSF PIRSF000521 4 145 5.2E-9 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_20585 aaa408877ef54ea79385d53c08ee806a 394 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 225 369 4.5E-21 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 RA13_20585 aaa408877ef54ea79385d53c08ee806a 394 Gene3D G3DSA:3.40.50.2000 5 211 2.9E-102 T 13-10-2018 RA13_20585 aaa408877ef54ea79385d53c08ee806a 394 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 7 376 1.4E-93 T 13-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 RA13_20585 aaa408877ef54ea79385d53c08ee806a 394 Gene3D G3DSA:3.40.50.2000 212 375 2.9E-102 T 13-10-2018 RA13_20585 aaa408877ef54ea79385d53c08ee806a 394 SUPERFAMILY SSF53756 1 389 9.42E-72 T 13-10-2018 RA13_10440 c319bbe69e1036151af59c23275585bc 317 Gene3D G3DSA:3.60.15.10 3 258 5.6E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_10440 c319bbe69e1036151af59c23275585bc 317 SUPERFAMILY SSF56281 14 309 4.19E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_10440 c319bbe69e1036151af59c23275585bc 317 Pfam PF00753 Metallo-beta-lactamase superfamily 21 231 4.1E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_10440 c319bbe69e1036151af59c23275585bc 317 SMART SM00849 19 231 1.2E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_14980 5165b57a3b6f52d18eb1f42c6ebb436d 368 SUPERFAMILY SSF52540 178 367 3.18E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14980 5165b57a3b6f52d18eb1f42c6ebb436d 368 SMART SM00962 177 368 1.4E-56 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RA13_14980 5165b57a3b6f52d18eb1f42c6ebb436d 368 Gene3D G3DSA:1.20.120.1380 121 359 2.3E-86 T 13-10-2018 RA13_14980 5165b57a3b6f52d18eb1f42c6ebb436d 368 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 264 2.2E-63 T 13-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 RA13_14980 5165b57a3b6f52d18eb1f42c6ebb436d 368 Pfam PF00448 SRP54-type protein, GTPase domain 178 367 1.0E-48 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RA13_14980 5165b57a3b6f52d18eb1f42c6ebb436d 368 Gene3D G3DSA:3.40.50.300 172 356 2.3E-86 T 13-10-2018 RA13_15160 9f495ac7f62ea3087a3481f1a9330a30 281 SUPERFAMILY SSF52540 9 191 4.73E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15160 9f495ac7f62ea3087a3481f1a9330a30 281 Gene3D G3DSA:3.40.50.300 12 179 4.5E-52 T 13-10-2018 RA13_15160 9f495ac7f62ea3087a3481f1a9330a30 281 Pfam PF01926 50S ribosome-binding GTPase 123 213 7.8E-17 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_15160 9f495ac7f62ea3087a3481f1a9330a30 281 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 278 5.3E-116 T 13-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis RA13_15160 9f495ac7f62ea3087a3481f1a9330a30 281 Gene3D G3DSA:1.10.1580.10 180 272 6.4E-30 T 13-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily RA13_15160 9f495ac7f62ea3087a3481f1a9330a30 281 PIRSF PIRSF006230 1 281 1.6E-105 T 13-10-2018 IPR016478 GTPase, MTG1 RA13_02000 308db80939926dd28bbcb1a664d410fc 407 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 399 2.3E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02000 308db80939926dd28bbcb1a664d410fc 407 Pfam PF07730 Histidine kinase 201 267 1.8E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RA13_02000 308db80939926dd28bbcb1a664d410fc 407 Gene3D G3DSA:3.30.565.10 270 405 7.2E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_02000 308db80939926dd28bbcb1a664d410fc 407 SMART SM00387 306 402 2.5E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02000 308db80939926dd28bbcb1a664d410fc 407 SUPERFAMILY SSF55874 276 399 6.16E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_12200 f8b24214ce3a6f7f651c7fe73c267503 304 SUPERFAMILY SSF52540 56 286 9.09E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_12200 f8b24214ce3a6f7f651c7fe73c267503 304 Pfam PF07728 AAA domain (dynein-related subfamily) 67 204 6.9E-29 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RA13_12200 f8b24214ce3a6f7f651c7fe73c267503 304 Gene3D G3DSA:3.40.50.300 50 221 1.1E-33 T 13-10-2018 RA13_12200 f8b24214ce3a6f7f651c7fe73c267503 304 SMART SM00382 64 210 2.8E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_12200 f8b24214ce3a6f7f651c7fe73c267503 304 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 68 86 2.6E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_12200 f8b24214ce3a6f7f651c7fe73c267503 304 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 140 158 2.6E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 RA13_12630 1d3dc555b6f6a141d142dd2025122f2a 399 Gene3D G3DSA:3.10.310.30 254 303 3.7E-9 T 13-10-2018 RA13_12630 1d3dc555b6f6a141d142dd2025122f2a 399 SUPERFAMILY SSF64182 3 302 4.06E-29 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily RA13_12630 1d3dc555b6f6a141d142dd2025122f2a 399 Gene3D G3DSA:3.90.1640.10 6 142 5.5E-6 T 13-10-2018 RA13_08420 ac3f9bd4325168a7620d733ca29a7553 177 Pfam PF02674 Colicin V production protein 2 162 3.1E-34 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RA13_07340 824a185b2b39b2a93fb6030d7b62ef1e 292 Pfam PF00950 ABC 3 transport family 6 273 2.2E-47 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 RA13_07340 824a185b2b39b2a93fb6030d7b62ef1e 292 Gene3D G3DSA:1.10.3470.10 3 277 6.7E-6 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_07340 824a185b2b39b2a93fb6030d7b62ef1e 292 SUPERFAMILY SSF81345 7 269 4.71E-36 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 Gene3D G3DSA:3.40.190.10 92 283 2.5E-41 T 13-10-2018 RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 Gene3D G3DSA:3.40.190.10 160 262 2.5E-41 T 13-10-2018 RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.1E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 SUPERFAMILY SSF46785 1 111 5.78E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 Pfam PF03466 LysR substrate binding domain 91 288 2.8E-39 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 SUPERFAMILY SSF53850 92 289 1.49E-36 T 13-10-2018 RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.9E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_05425 e608bfdfcfa554bcd3bdfb7189c6292c 290 Gene3D G3DSA:1.10.10.10 1 84 9.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_02110 42f2c345fb0395ce1dc892cbd0634e3f 65 Pfam PF09954 Uncharacterized protein conserved in bacteria (DUF2188) 4 65 7.7E-13 T 13-10-2018 IPR018691 Protein of unknown function DUF2188 RA13_02110 42f2c345fb0395ce1dc892cbd0634e3f 65 ProDom PD054650 YYCD 1 65 5.0E-26 T 13-10-2018 IPR020086 Uncharacterised protein family YycD RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 TIGRFAM TIGR00835 agcS: amino acid carrier protein 17 439 1.1E-156 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 Pfam PF01235 Sodium:alanine symporter family 57 451 1.1E-160 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 PRINTS PR00175 Sodium/alanine symporter signature 182 200 5.6E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 PRINTS PR00175 Sodium/alanine symporter signature 346 368 5.6E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 PRINTS PR00175 Sodium/alanine symporter signature 210 229 5.6E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 PRINTS PR00175 Sodium/alanine symporter signature 92 114 5.6E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 PRINTS PR00175 Sodium/alanine symporter signature 301 319 5.6E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 PRINTS PR00175 Sodium/alanine symporter signature 408 428 5.6E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_00300 e7ac38e8d1c6832061c7e8c0766c3a5f 480 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 92 107 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_10415 91d1ad38249e5a8cab018f2239566d5e 49 Gene3D G3DSA:2.20.28.120 1 49 3.9E-23 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_10415 91d1ad38249e5a8cab018f2239566d5e 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 18.229 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_10415 91d1ad38249e5a8cab018f2239566d5e 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_10415 91d1ad38249e5a8cab018f2239566d5e 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 1.5E-19 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_10415 91d1ad38249e5a8cab018f2239566d5e 49 Pfam PF00471 Ribosomal protein L33 3 49 2.8E-22 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_10415 91d1ad38249e5a8cab018f2239566d5e 49 SUPERFAMILY SSF57829 2 49 4.03E-18 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RA13_07610 714733b86130996d7a305586f4f0e8f8 253 SUPERFAMILY SSF51735 1 248 3.69E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_07610 714733b86130996d7a305586f4f0e8f8 253 Gene3D G3DSA:3.40.50.720 1 240 3.6E-31 T 13-10-2018 RA13_07610 714733b86130996d7a305586f4f0e8f8 253 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 173 3.8E-11 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RA13_00210 b7a3058752cb5f150e41d4a3a477a98f 126 Pfam PF10710 Protein of unknown function (DUF2512) 1 117 1.8E-36 T 13-10-2018 IPR019649 Protein of unknown function DUF2512 RA13_04780 8a9d9f26185c3a36142f2fef83de8b7c 387 Pfam PF07730 Histidine kinase 180 248 2.3E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RA13_04780 8a9d9f26185c3a36142f2fef83de8b7c 387 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 291 384 1.1E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_04780 8a9d9f26185c3a36142f2fef83de8b7c 387 Pfam PF05384 Sensor protein DegS 12 170 2.8E-58 T 13-10-2018 IPR008595 Sensor DegS GO:0007165|GO:0016301 RA13_04780 8a9d9f26185c3a36142f2fef83de8b7c 387 SUPERFAMILY SSF55874 255 383 4.06E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_04780 8a9d9f26185c3a36142f2fef83de8b7c 387 PIRSF PIRSF003169 1 386 2.5E-165 T 13-10-2018 IPR016381 Signal transduction histidine kinase, DegS GO:0000155|GO:0000160|GO:0004673 RA13_04780 8a9d9f26185c3a36142f2fef83de8b7c 387 Gene3D G3DSA:3.30.565.10 256 383 4.9E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_04780 8a9d9f26185c3a36142f2fef83de8b7c 387 SMART SM00387 289 385 3.7E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_04575 e282f935c544f6076cd22cc70047d541 363 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 5 359 9.1E-65 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 RA13_04575 e282f935c544f6076cd22cc70047d541 363 Pfam PF03845 Spore germination protein 6 322 2.1E-56 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 RA13_04575 e282f935c544f6076cd22cc70047d541 363 Gene3D G3DSA:1.20.1740.10 1 362 7.9E-10 T 13-10-2018 RA13_19260 e8d8476c49adaa4dc8e068eb45eb252f 178 Hamap MF_01256 Putative metal-dependent hydrolase . 4 178 39.495 T 13-10-2018 IPR023774 Putative metal-dependent hydrolase YfiT RA13_19260 e8d8476c49adaa4dc8e068eb45eb252f 178 Pfam PF12867 DinB superfamily 30 168 2.3E-19 T 13-10-2018 IPR024775 DinB-like domain RA13_19260 e8d8476c49adaa4dc8e068eb45eb252f 178 Gene3D G3DSA:1.20.120.450 2 178 1.4E-55 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_19260 e8d8476c49adaa4dc8e068eb45eb252f 178 SUPERFAMILY SSF109854 6 177 3.05E-54 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_17355 a6b9a4c24dba3a1471133fa29f320de1 143 Pfam PF13673 Acetyltransferase (GNAT) domain 12 139 2.2E-21 T 13-10-2018 IPR000182 GNAT domain RA13_17355 a6b9a4c24dba3a1471133fa29f320de1 143 SUPERFAMILY SSF55729 3 140 9.09E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_17355 a6b9a4c24dba3a1471133fa29f320de1 143 Gene3D G3DSA:3.40.630.30 2 140 2.9E-45 T 13-10-2018 RA13_05300 1ae4eef572af1762502340e74b5dd1bb 226 Gene3D G3DSA:3.40.50.300 2 226 1.4E-69 T 13-10-2018 RA13_05300 1ae4eef572af1762502340e74b5dd1bb 226 Pfam PF13614 AAA domain 51 202 4.2E-12 T 13-10-2018 IPR025669 AAA domain RA13_05300 1ae4eef572af1762502340e74b5dd1bb 226 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 26 222 4.0E-64 T 13-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 RA13_05300 1ae4eef572af1762502340e74b5dd1bb 226 SUPERFAMILY SSF52540 45 217 7.28E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 Gene3D G3DSA:1.10.10.10 6 86 2.9E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 SUPERFAMILY SSF46785 15 84 2.27E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 70 85 4.5E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 4.5E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 22 37 4.5E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 53 4.5E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 SMART SM00418 20 89 1.7E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_20715 aaf6e0bf36426bae2a12938eb3250c99 89 Pfam PF01022 Bacterial regulatory protein, arsR family 27 74 1.3E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_21085 adbfd182a024bc91022c7b33603e2e7f 106 Pfam PF00085 Thioredoxin 4 103 2.0E-19 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RA13_21085 adbfd182a024bc91022c7b33603e2e7f 106 Gene3D G3DSA:3.40.30.10 1 106 5.9E-25 T 13-10-2018 RA13_21085 adbfd182a024bc91022c7b33603e2e7f 106 SUPERFAMILY SSF52833 2 105 3.48E-26 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_04405 85848f8739ca20b0b7328e047e557001 158 SUPERFAMILY SSF82185 44 143 9.02E-13 T 13-10-2018 RA13_04405 85848f8739ca20b0b7328e047e557001 158 Pfam PF07661 MORN repeat variant 68 87 0.14 T 13-10-2018 IPR011652 MORN variant RA13_04405 85848f8739ca20b0b7328e047e557001 158 Pfam PF07661 MORN repeat variant 92 108 0.67 T 13-10-2018 IPR011652 MORN variant RA13_04405 85848f8739ca20b0b7328e047e557001 158 Pfam PF07661 MORN repeat variant 117 130 0.33 T 13-10-2018 IPR011652 MORN variant RA13_04405 85848f8739ca20b0b7328e047e557001 158 Gene3D G3DSA:3.90.930.1 36 148 2.9E-10 T 13-10-2018 RA13_17135 73d48bd1b0b5a934d488036dbc4293f7 140 Pfam PF07849 Protein of unknown function (DUF1641) 100 121 2.2E-5 T 13-10-2018 IPR012440 Protein of unknown function DUF1641 RA13_08005 09d8e44be04d911c6ecf0096b49548c8 167 Hamap MF_00269 Thiol peroxidase [tpx]. 3 163 37.593 T 13-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 RA13_08005 09d8e44be04d911c6ecf0096b49548c8 167 Gene3D G3DSA:3.40.30.10 1 165 2.6E-48 T 13-10-2018 RA13_08005 09d8e44be04d911c6ecf0096b49548c8 167 SUPERFAMILY SSF52833 1 160 8.7E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_08005 09d8e44be04d911c6ecf0096b49548c8 167 Pfam PF08534 Redoxin 19 156 1.4E-21 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 RA13_08005 09d8e44be04d911c6ecf0096b49548c8 167 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 RA13_09975 2c479a57702fca497e56c2a92b962b3a 102 Gene3D G3DSA:3.30.700.10 10 100 1.0E-8 T 13-10-2018 RA13_09975 2c479a57702fca497e56c2a92b962b3a 102 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 29 7.6E-10 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RA13_09975 2c479a57702fca497e56c2a92b962b3a 102 SUPERFAMILY SSF54523 10 75 2.59E-12 T 13-10-2018 RA13_09975 2c479a57702fca497e56c2a92b962b3a 102 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RA13_09975 2c479a57702fca497e56c2a92b962b3a 102 PIRSF PIRSF029928 2 101 4.4E-34 T 13-10-2018 IPR016940 ComG operon protein C GO:0030420 RA13_09975 2c479a57702fca497e56c2a92b962b3a 102 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 1.1E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site RA13_00780 abd8d6917d84a2563d0ccc6fc400791d 348 Gene3D G3DSA:3.40.50.720 150 282 2.6E-74 T 13-10-2018 RA13_00780 abd8d6917d84a2563d0ccc6fc400791d 348 SUPERFAMILY SSF51735 140 284 2.57E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_00780 abd8d6917d84a2563d0ccc6fc400791d 348 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RA13_00780 abd8d6917d84a2563d0ccc6fc400791d 348 Gene3D G3DSA:3.90.180.10 11 320 2.6E-74 T 13-10-2018 RA13_00780 abd8d6917d84a2563d0ccc6fc400791d 348 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 133 1.2E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RA13_00780 abd8d6917d84a2563d0ccc6fc400791d 348 SUPERFAMILY SSF50129 1 172 2.28E-47 T 13-10-2018 IPR011032 GroES-like superfamily RA13_00780 abd8d6917d84a2563d0ccc6fc400791d 348 Pfam PF00107 Zinc-binding dehydrogenase 173 289 9.5E-9 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RA13_07275 06eeaf8dda743c0c01b5bc9a926f54c1 408 Pfam PF00534 Glycosyl transferases group 1 179 355 8.6E-44 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 RA13_07275 06eeaf8dda743c0c01b5bc9a926f54c1 408 Pfam PF13439 Glycosyltransferase Family 4 34 164 9.4E-10 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RA13_07275 06eeaf8dda743c0c01b5bc9a926f54c1 408 SUPERFAMILY SSF53756 16 378 4.32E-67 T 13-10-2018 RA13_07275 06eeaf8dda743c0c01b5bc9a926f54c1 408 Gene3D G3DSA:3.40.50.2000 174 378 4.8E-45 T 13-10-2018 RA13_07275 06eeaf8dda743c0c01b5bc9a926f54c1 408 Gene3D G3DSA:3.40.50.2000 4 173 6.2E-14 T 13-10-2018 RA13_00710 d9df13109ea0fb41b48db565bee8db05 160 Pfam PF00583 Acetyltransferase (GNAT) family 28 139 7.4E-5 T 13-10-2018 IPR000182 GNAT domain RA13_00710 d9df13109ea0fb41b48db565bee8db05 160 SUPERFAMILY SSF55729 5 149 6.3E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_00710 d9df13109ea0fb41b48db565bee8db05 160 Gene3D G3DSA:3.40.630.30 1 154 3.8E-13 T 13-10-2018 RA13_17640 661e44a0768dbd00c7cbbe91cf78e410 261 Pfam PF10026 Predicted Zn-dependent protease (DUF2268) 68 258 1.1E-60 T 13-10-2018 IPR018728 Domain of unknown function DUF2268 RA13_04855 60dbb01ddad4d5ad49e0c0f4042414ef 112 SUPERFAMILY SSF160214 25 110 1.44E-25 T 13-10-2018 IPR035924 FlaG-like superfamily RA13_04855 60dbb01ddad4d5ad49e0c0f4042414ef 112 Gene3D G3DSA:3.30.160.170 9 108 1.9E-29 T 13-10-2018 IPR035924 FlaG-like superfamily RA13_04855 60dbb01ddad4d5ad49e0c0f4042414ef 112 Pfam PF03646 FlaG protein 30 110 1.7E-24 T 13-10-2018 IPR005186 FlaG protein RA13_13835 715407cd3cc585acae3d10e197df596d 119 Pfam PF15933 Antitoxin to bacterial toxin RNase LS or RnlA 18 107 8.7E-14 T 13-10-2018 IPR031834 Antitoxin RnlB/LsoB RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 SUPERFAMILY SSF52402 3 171 4.19E-48 T 13-10-2018 RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 117 128 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 Pfam PF00764 Arginosuccinate synthase 8 392 8.5E-184 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 397 54.716 T 13-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 Gene3D G3DSA:3.90.1260.10 175 402 4.3E-91 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 Gene3D G3DSA:3.40.50.620 1 174 3.7E-67 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 SUPERFAMILY SSF69864 171 398 2.09E-93 T 13-10-2018 RA13_08025 a036afd4bfc07d1e1be51dd0bdc5edbd 403 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 396 1.2E-180 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RA13_11020 266af3a3c37e8a630e56de9566367847 243 ProDom PD119161 YPHF BH1644 PROTEINS PRECURSOR ORF1 RBL05088 SIGNAL SIMILAR 16 238 1.0E-105 T 13-10-2018 RA13_21565 a1a85bf4eee935db867f471e5e64de30 224 SUPERFAMILY SSF161098 14 210 4.32E-44 T 13-10-2018 IPR035906 MetI-like superfamily RA13_21565 a1a85bf4eee935db867f471e5e64de30 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 219 9.4E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_21565 a1a85bf4eee935db867f471e5e64de30 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 113 1.8E-25 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RA13_21565 a1a85bf4eee935db867f471e5e64de30 224 Gene3D G3DSA:1.10.3720.10 2 220 4.1E-57 T 13-10-2018 IPR035906 MetI-like superfamily RA13_04880 c8aa06dd76899e37bb1298010ae49cad 188 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 187 25.378 T 13-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid RA13_04880 c8aa06dd76899e37bb1298010ae49cad 188 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 128 183 5.6E-30 T 13-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal RA13_04880 c8aa06dd76899e37bb1298010ae49cad 188 SUPERFAMILY SSF69754 2 108 1.83E-32 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like RA13_04880 c8aa06dd76899e37bb1298010ae49cad 188 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 102 3.9E-37 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RA13_04880 c8aa06dd76899e37bb1298010ae49cad 188 Gene3D G3DSA:3.30.160.100 1 110 2.1E-30 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like RA13_04880 c8aa06dd76899e37bb1298010ae49cad 188 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 95 5.1E-29 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RA13_04880 c8aa06dd76899e37bb1298010ae49cad 188 Gene3D G3DSA:3.30.505.50 141 187 3.3E-27 T 13-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 Gene3D G3DSA:3.40.640.10 61 309 1.0E-149 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 Gene3D G3DSA:3.90.1150.10 26 388 1.0E-149 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 7 398 2.4E-162 T 13-10-2018 IPR010164 Ornithine aminotransferase GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 Pfam PF00202 Aminotransferase class-III 19 398 7.0E-138 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 SUPERFAMILY SSF53383 6 399 5.85E-124 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 226 263 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 PIRSF PIRSF000521 3 163 1.7E-8 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 PIRSF PIRSF000521 177 401 4.7E-33 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_02220 e3e726d9e9e1bb1e1a75fd62856bd753 401 Hamap MF_01689 Ornithine aminotransferase [rocD]. 7 399 65.851 T 13-10-2018 IPR034757 Ornithine aminotransferase, bacterial type GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922 RA13_04190 f33e21b5cc4e5ebe594dacec63fba49c 363 SUPERFAMILY SSF53756 1 349 1.13E-15 T 13-10-2018 RA13_04190 f33e21b5cc4e5ebe594dacec63fba49c 363 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 196 343 6.5E-13 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RA13_04190 f33e21b5cc4e5ebe594dacec63fba49c 363 Gene3D G3DSA:3.40.50.11190 1 173 9.9E-47 T 13-10-2018 RA13_04190 f33e21b5cc4e5ebe594dacec63fba49c 363 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 1 302 8.3E-99 T 13-10-2018 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase RA13_04190 f33e21b5cc4e5ebe594dacec63fba49c 363 Gene3D G3DSA:3.40.50.2000 174 316 2.5E-44 T 13-10-2018 RA13_19700 82bc2e34b0f85a46a69325300d6e888a 358 SUPERFAMILY SSF48452 195 348 3.22E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_19700 82bc2e34b0f85a46a69325300d6e888a 358 Gene3D G3DSA:1.25.40.10 265 358 1.9E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_19700 82bc2e34b0f85a46a69325300d6e888a 358 Pfam PF00535 Glycosyl transferase family 2 5 132 4.3E-20 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_19700 82bc2e34b0f85a46a69325300d6e888a 358 SUPERFAMILY SSF53448 3 154 9.38E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19700 82bc2e34b0f85a46a69325300d6e888a 358 Gene3D G3DSA:3.90.550.10 2 219 8.8E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_02950 94872c8d480b5d4ce7283a1d70f0a58b 270 Pfam PF00805 Pentapeptide repeats (8 copies) 208 241 1.3E-11 T 13-10-2018 IPR001646 Pentapeptide repeat RA13_02950 94872c8d480b5d4ce7283a1d70f0a58b 270 Pfam PF00805 Pentapeptide repeats (8 copies) 188 205 0.0015 T 13-10-2018 IPR001646 Pentapeptide repeat RA13_02950 94872c8d480b5d4ce7283a1d70f0a58b 270 SUPERFAMILY SSF141571 53 262 3.66E-20 T 13-10-2018 RA13_02950 94872c8d480b5d4ce7283a1d70f0a58b 270 Gene3D G3DSA:2.160.20.80 145 253 1.1E-19 T 13-10-2018 RA13_19465 d1a99e970c1629a7e877d583b6e7f158 279 PIRSF PIRSF035875 1 277 2.1E-82 T 13-10-2018 IPR017039 Virulence factor BrkB RA13_19465 d1a99e970c1629a7e877d583b6e7f158 279 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 3 264 9.5E-84 T 13-10-2018 IPR017039 Virulence factor BrkB RA13_19465 d1a99e970c1629a7e877d583b6e7f158 279 Pfam PF03631 Virulence factor BrkB 14 265 1.1E-70 T 13-10-2018 IPR017039 Virulence factor BrkB RA13_18795 085968419b85ca384eaf082a28d4a000 363 SMART SM00267 181 355 9.5E-62 T 13-10-2018 IPR000160 GGDEF domain RA13_18795 085968419b85ca384eaf082a28d4a000 363 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 189 354 1.7E-48 T 13-10-2018 IPR000160 GGDEF domain RA13_18795 085968419b85ca384eaf082a28d4a000 363 SUPERFAMILY SSF55073 197 355 5.65E-46 T 13-10-2018 IPR029787 Nucleotide cyclase RA13_18795 085968419b85ca384eaf082a28d4a000 363 Pfam PF07694 5TMR of 5TMR-LYT 21 176 3.7E-17 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 RA13_18795 085968419b85ca384eaf082a28d4a000 363 Pfam PF00990 Diguanylate cyclase, GGDEF domain 192 351 2.6E-46 T 13-10-2018 IPR000160 GGDEF domain RA13_18795 085968419b85ca384eaf082a28d4a000 363 Gene3D G3DSA:3.30.70.270 186 361 3.5E-53 T 13-10-2018 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 PIRSF PIRSF000161 4 267 3.2E-70 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 SUPERFAMILY SSF51735 4 156 2.51E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 267 30.047 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 Gene3D G3DSA:3.40.50.720 7 264 1.7E-76 T 13-10-2018 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 151 168 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 265 1.2E-33 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 267 3.1E-94 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 SUPERFAMILY SSF55347 130 238 2.4E-37 T 13-10-2018 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 4.3E-31 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RA13_11185 c36488c9b47166b96c8ec0194ea69850 267 Gene3D G3DSA:3.30.360.10 131 236 1.7E-76 T 13-10-2018 RA13_09330 c03314dbc316fc4866d87d97d16274bd 186 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 51 1.9E-4 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_09330 c03314dbc316fc4866d87d97d16274bd 186 Pfam PF14278 Transcriptional regulator C-terminal region 86 163 2.7E-13 T 13-10-2018 IPR039532 Transcriptional regulator TetR, C-terminal, Firmicutes type RA13_09330 c03314dbc316fc4866d87d97d16274bd 186 Gene3D G3DSA:1.10.357.10 2 185 3.6E-43 T 13-10-2018 RA13_09330 c03314dbc316fc4866d87d97d16274bd 186 SUPERFAMILY SSF46689 3 69 8.98E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_11315 03028dd3cdc050dbee5ecaf89b67e1c7 139 Gene3D G3DSA:2.60.40.790 27 139 2.2E-9 T 13-10-2018 IPR008978 HSP20-like chaperone RA13_11315 03028dd3cdc050dbee5ecaf89b67e1c7 139 SUPERFAMILY SSF49764 46 137 6.54E-7 T 13-10-2018 IPR008978 HSP20-like chaperone RA13_08530 882623b8efa1a9a0c44b632585490619 361 Pfam PF10646 Sporulation and spore germination 76 185 3.3E-20 T 13-10-2018 IPR019606 GerMN domain RA13_08530 882623b8efa1a9a0c44b632585490619 361 Pfam PF10646 Sporulation and spore germination 222 335 3.5E-16 T 13-10-2018 IPR019606 GerMN domain RA13_08530 882623b8efa1a9a0c44b632585490619 361 SMART SM00909 250 341 9.7E-22 T 13-10-2018 IPR019606 GerMN domain RA13_08530 882623b8efa1a9a0c44b632585490619 361 SMART SM00909 99 189 6.0E-24 T 13-10-2018 IPR019606 GerMN domain RA13_19300 05813cd63de8be91deb09334eb0de3ed 134 Pfam PF07681 DoxX 9 87 1.1E-19 T 13-10-2018 IPR032808 DoxX family RA13_03870 2148908a15e1b318aa947a08a3798801 709 Pfam PF13183 4Fe-4S dicluster domain 274 383 2.4E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RA13_03870 2148908a15e1b318aa947a08a3798801 709 SUPERFAMILY SSF103501 7 239 1.31E-15 T 13-10-2018 IPR036197 NarG-like superfamily RA13_03870 2148908a15e1b318aa947a08a3798801 709 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 371 382 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RA13_03870 2148908a15e1b318aa947a08a3798801 709 Pfam PF02754 Cysteine-rich domain 581 668 2.8E-17 T 13-10-2018 IPR004017 Cysteine-rich domain RA13_03870 2148908a15e1b318aa947a08a3798801 709 Pfam PF02754 Cysteine-rich domain 459 537 2.1E-5 T 13-10-2018 IPR004017 Cysteine-rich domain RA13_03870 2148908a15e1b318aa947a08a3798801 709 SUPERFAMILY SSF46548 259 399 4.19E-20 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RA13_20370 f68e2c19df07be25cde3d79669351ae6 670 Pfam PF00144 Beta-lactamase 60 380 1.8E-59 T 13-10-2018 IPR001466 Beta-lactamase-related RA13_20370 f68e2c19df07be25cde3d79669351ae6 670 Pfam PF00395 S-layer homology domain 502 545 6.9E-4 T 13-10-2018 IPR001119 S-layer homology domain RA13_20370 f68e2c19df07be25cde3d79669351ae6 670 SUPERFAMILY SSF56601 57 377 3.9E-79 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_20370 f68e2c19df07be25cde3d79669351ae6 670 Gene3D G3DSA:3.40.710.10 47 388 1.5E-83 T 13-10-2018 RA13_11360 06b0e9afec48af918ae4809ddff5af2e 50 Pfam PF14139 YpzG-like protein 1 49 4.8E-26 T 13-10-2018 IPR025413 YpzG-like protein RA13_18495 0db0a6986a8b9adb92cf94037fa0d581 247 Gene3D G3DSA:3.40.50.1220 10 242 1.7E-69 T 13-10-2018 RA13_18495 0db0a6986a8b9adb92cf94037fa0d581 247 Gene3D G3DSA:3.30.1600.10 28 170 1.7E-69 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily RA13_18495 0db0a6986a8b9adb92cf94037fa0d581 247 Hamap MF_01968 NAD-dependent protein deacetylase [cobB]. 3 244 58.797 T 13-10-2018 IPR028628 Sirtuin, class U GO:0034979|GO:0051287 RA13_18495 0db0a6986a8b9adb92cf94037fa0d581 247 SUPERFAMILY SSF52467 3 245 4.07E-74 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RA13_18495 0db0a6986a8b9adb92cf94037fa0d581 247 Pfam PF02146 Sir2 family 19 198 5.5E-54 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 RA13_07420 80a1652f1c9aa57a99ad98975c8b8df1 273 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 262 2.0E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_07420 80a1652f1c9aa57a99ad98975c8b8df1 273 Gene3D G3DSA:1.10.3720.10 72 267 1.5E-23 T 13-10-2018 IPR035906 MetI-like superfamily RA13_07420 80a1652f1c9aa57a99ad98975c8b8df1 273 SUPERFAMILY SSF161098 72 253 7.19E-30 T 13-10-2018 IPR035906 MetI-like superfamily RA13_17020 850b5f879669f0c70e09a5850d4e63f0 68 Pfam PF17356 Phage-like element PBSX protein XtrA 4 67 3.1E-24 T 13-10-2018 IPR035530 Phage-like element PBSX protein XtrA RA13_17020 850b5f879669f0c70e09a5850d4e63f0 68 ProDom PD027572 XTRA PBSX RELATED YQAO ELEMENT PHAGE PHAGE-LIKE 8 62 7.0E-21 T 13-10-2018 IPR035530 Phage-like element PBSX protein XtrA RA13_16860 2ffdad742053ade6f0dcb1e44afc964c 56 Gene3D G3DSA:1.20.5.740 34 56 1.6E-18 T 13-10-2018 RA13_16860 2ffdad742053ade6f0dcb1e44afc964c 56 Pfam PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system 1 56 2.8E-35 T 13-10-2018 IPR025897 Antitoxin SpoIISB RA13_17060 e5562a5f91630ae0580ac61d5a9722bd 201 Pfam PF05908 Poly-gamma-glutamate hydrolase 5 193 1.1E-68 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase RA13_17060 e5562a5f91630ae0580ac61d5a9722bd 201 Gene3D G3DSA:3.40.630.100 1 201 1.4E-61 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily RA13_10710 6d22436b2ae9985ca01c658bd7989e7d 279 Gene3D G3DSA:1.10.3720.10 3 266 1.3E-63 T 13-10-2018 IPR035906 MetI-like superfamily RA13_10710 6d22436b2ae9985ca01c658bd7989e7d 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 269 9.2E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_10710 6d22436b2ae9985ca01c658bd7989e7d 279 SUPERFAMILY SSF161098 10 279 1.03E-68 T 13-10-2018 IPR035906 MetI-like superfamily RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PIRSF PIRSF000126 1 237 2.8E-63 T 13-10-2018 RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 Gene3D G3DSA:3.40.50.720 1 236 9.4E-73 T 13-10-2018 RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 SUPERFAMILY SSF51735 3 223 3.2E-71 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 5.7E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 5.7E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.7E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 192 0.0034 T 13-10-2018 RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 Pfam PF00106 short chain dehydrogenase 7 197 4.1E-66 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_12415 dfdfce2b620aee7dabc4fdccc15871bd 238 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_09715 8eecc91b9b88ddcd566665d2842e98bc 164 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 29 157 4.1E-39 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 RA13_09715 8eecc91b9b88ddcd566665d2842e98bc 164 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 14 159 31.351 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 RA13_02055 23b7e3a085ed9b0891b9cdc0cd37dc8e 309 Gene3D G3DSA:3.90.1640.10 1 188 4.9E-85 T 13-10-2018 RA13_02055 23b7e3a085ed9b0891b9cdc0cd37dc8e 309 Pfam PF02833 DHHA2 domain 183 306 8.2E-24 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_02055 23b7e3a085ed9b0891b9cdc0cd37dc8e 309 SMART SM01131 181 307 1.0E-61 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_02055 23b7e3a085ed9b0891b9cdc0cd37dc8e 309 Gene3D G3DSA:3.10.310.20 190 308 7.2E-41 T 13-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_02055 23b7e3a085ed9b0891b9cdc0cd37dc8e 309 Hamap MF_00207 Probable manganese-dependent inorganic pyrophosphatase [ppaC]. 3 309 49.209 T 13-10-2018 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable GO:0004427 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_02055 23b7e3a085ed9b0891b9cdc0cd37dc8e 309 SUPERFAMILY SSF64182 1 307 2.35E-86 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily RA13_02055 23b7e3a085ed9b0891b9cdc0cd37dc8e 309 Pfam PF01368 DHH family 3 146 5.4E-32 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 Gene3D G3DSA:1.20.120.530 75 220 1.8E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 SUPERFAMILY SSF48008 77 214 3.92E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 Gene3D G3DSA:1.10.10.10 9 72 5.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 SUPERFAMILY SSF46785 7 69 5.94E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 SMART SM00895 81 206 1.8E-14 T 13-10-2018 IPR011711 GntR, C-terminal RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 SMART SM00345 15 73 1.8E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 44 63 3.5E-5 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 44 3.5E-5 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 69 1.1E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_02025 71d3c0a67037d42ea7f6338ab2c00085 221 Pfam PF07729 FCD domain 81 205 3.3E-20 T 13-10-2018 IPR011711 GntR, C-terminal RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 Gene3D G3DSA:1.10.443.10 110 290 8.4E-69 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 89 9.8E-24 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 296 64.304 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 296 56.829 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 Pfam PF00589 Phage integrase family 110 282 2.0E-56 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 6 296 3.2E-101 T 13-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 SUPERFAMILY SSF56349 3 289 3.24E-60 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 7 296 2.6E-121 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RA13_10600 78f45d8f81b55d4c7e4687281b4579c4 296 Gene3D G3DSA:1.10.150.130 1 99 3.0E-22 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RA13_01555 c83dfd12768c4805ab6f987848246498 275 Pfam PF04468 PSP1 C-terminal conserved region 62 146 4.2E-33 T 13-10-2018 IPR007557 PSP1, C-terminal RA13_11230 bf46ce34309a43e82d34c67e459248a8 127 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 4.9E-67 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RA13_11230 bf46ce34309a43e82d34c67e459248a8 127 Pfam PF02261 Aspartate decarboxylase 1 114 4.9E-54 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RA13_11230 bf46ce34309a43e82d34c67e459248a8 127 Gene3D G3DSA:2.40.40.20 1 126 1.4E-54 T 13-10-2018 RA13_11230 bf46ce34309a43e82d34c67e459248a8 127 PIRSF PIRSF006246 1 126 1.8E-55 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RA13_11230 bf46ce34309a43e82d34c67e459248a8 127 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 98 4.0E-45 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RA13_11230 bf46ce34309a43e82d34c67e459248a8 127 SUPERFAMILY SSF50692 1 121 3.17E-51 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RA13_11230 bf46ce34309a43e82d34c67e459248a8 127 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 127 74.937 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RA13_13610 a180822745b069892f97fa090a863b27 80 Pfam PF00462 Glutaredoxin 9 57 2.0E-8 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RA13_13610 a180822745b069892f97fa090a863b27 80 Gene3D G3DSA:3.40.30.10 1 80 1.0E-13 T 13-10-2018 RA13_13610 a180822745b069892f97fa090a863b27 80 SUPERFAMILY SSF52833 6 79 3.65E-16 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_18690 a96262e264038ad31751db7e32f50696 380 SUPERFAMILY SSF55781 28 170 1.66E-19 T 13-10-2018 RA13_18690 a96262e264038ad31751db7e32f50696 380 SMART SM00065 24 175 5.9E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 RA13_18690 a96262e264038ad31751db7e32f50696 380 SUPERFAMILY SSF55874 263 372 1.83E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_18690 a96262e264038ad31751db7e32f50696 380 Gene3D G3DSA:3.30.450.40 3 178 3.9E-23 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_18690 a96262e264038ad31751db7e32f50696 380 Pfam PF13185 GAF domain 23 166 3.5E-17 T 13-10-2018 IPR003018 GAF domain GO:0005515 RA13_18690 a96262e264038ad31751db7e32f50696 380 SMART SM00387 280 374 1.5E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_18690 a96262e264038ad31751db7e32f50696 380 Gene3D G3DSA:3.30.565.10 252 372 2.7E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_18690 a96262e264038ad31751db7e32f50696 380 Pfam PF07730 Histidine kinase 182 246 2.3E-17 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 RA13_15255 87fcc930e32cb862f64e220503247226 220 Pfam PF01842 ACT domain 149 210 2.8E-10 T 13-10-2018 IPR002912 ACT domain RA13_15255 87fcc930e32cb862f64e220503247226 220 SUPERFAMILY SSF55021 137 217 8.81E-17 T 13-10-2018 RA13_15255 87fcc930e32cb862f64e220503247226 220 Pfam PF03315 Serine dehydratase beta chain 5 73 3.4E-12 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RA13_15255 87fcc930e32cb862f64e220503247226 220 Gene3D G3DSA:3.30.1330.90 13 136 3.7E-22 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RA13_15255 87fcc930e32cb862f64e220503247226 220 PIRSF PIRSF036692 1 220 1.3E-104 T 13-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RA13_15255 87fcc930e32cb862f64e220503247226 220 SUPERFAMILY SSF143548 19 137 1.06E-32 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RA13_15255 87fcc930e32cb862f64e220503247226 220 Gene3D G3DSA:3.30.70.260 139 217 1.9E-14 T 13-10-2018 RA13_15255 87fcc930e32cb862f64e220503247226 220 TIGRFAM TIGR00719 sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit 1 206 1.9E-113 T 13-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RA13_12405 8e6e53e812569141aa6f308c9ab7cd18 168 Pfam PF05163 DinB family 5 164 4.2E-41 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB RA13_12405 8e6e53e812569141aa6f308c9ab7cd18 168 SUPERFAMILY SSF109854 7 149 9.31E-29 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_12405 8e6e53e812569141aa6f308c9ab7cd18 168 Gene3D G3DSA:1.20.120.450 3 164 6.1E-41 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_10845 498054d68eefea6a8a04b3fcc065bd9e 179 SUPERFAMILY SSF52833 10 169 5.23E-43 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_10845 498054d68eefea6a8a04b3fcc065bd9e 179 Gene3D G3DSA:3.40.30.10 37 177 1.1E-46 T 13-10-2018 RA13_10845 498054d68eefea6a8a04b3fcc065bd9e 179 ProSitePatterns PS00194 Thioredoxin family active site. 66 84 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RA13_10845 498054d68eefea6a8a04b3fcc065bd9e 179 Hamap MF_01319 Thiol-disulfide oxidoreductase ResA [resA]. 1 174 45.011 T 13-10-2018 IPR023555 Thiol-disulphide oxidoreductase ResA GO:0005886|GO:0015036|GO:0017004 RA13_10845 498054d68eefea6a8a04b3fcc065bd9e 179 Pfam PF00578 AhpC/TSA family 39 154 7.3E-35 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RA13_15480 dccb6dcb990c8f7abf5c096dd9ebb3a8 258 SMART SM00363 182 239 3.0E-14 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_15480 dccb6dcb990c8f7abf5c096dd9ebb3a8 258 Gene3D G3DSA:3.30.1370.160 3 80 5.6E-31 T 13-10-2018 RA13_15480 dccb6dcb990c8f7abf5c096dd9ebb3a8 258 Gene3D G3DSA:3.30.70.330 81 166 3.0E-26 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RA13_15480 dccb6dcb990c8f7abf5c096dd9ebb3a8 258 SUPERFAMILY SSF55174 36 252 3.79E-33 T 13-10-2018 RA13_15480 dccb6dcb990c8f7abf5c096dd9ebb3a8 258 Pfam PF01479 S4 domain 183 227 6.3E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_15480 dccb6dcb990c8f7abf5c096dd9ebb3a8 258 Gene3D G3DSA:3.10.290.10 172 232 1.8E-9 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RA13_10570 b8754f859abe44774820875da80e19d3 468 Pfam PF03553 Na+/H+ antiporter family 159 451 3.1E-68 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RA13_10570 b8754f859abe44774820875da80e19d3 468 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 5 458 1.7E-205 T 13-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 RA13_08455 18ff231dfceef87fce4460c6e9c3d68b 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 257 1.9E-64 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_08455 18ff231dfceef87fce4460c6e9c3d68b 258 SUPERFAMILY SSF52096 2 257 1.09E-83 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_08455 18ff231dfceef87fce4460c6e9c3d68b 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RA13_08455 18ff231dfceef87fce4460c6e9c3d68b 258 Gene3D G3DSA:3.90.226.10 1 258 1.5E-90 T 13-10-2018 RA13_04975 f0cf0186e21504a8036c8374e5aa5a23 364 Pfam PF13349 Putative adhesin 107 350 5.6E-18 T 13-10-2018 IPR025164 Putative adhesin RA13_04975 f0cf0186e21504a8036c8374e5aa5a23 364 PIRSF PIRSF012569 1 364 1.1E-133 T 13-10-2018 IPR016599 Uncharacterised conserved protein UCP012569 RA13_20995 a8e3fa57197acaf7be6d299f597cd7ce 160 Gene3D G3DSA:3.30.565.10 5 152 3.7E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_20995 a8e3fa57197acaf7be6d299f597cd7ce 160 Pfam PF13581 Histidine kinase-like ATPase domain 12 141 5.2E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_20995 a8e3fa57197acaf7be6d299f597cd7ce 160 Hamap MF_00638 Serine-protein kinase RsbW [rsbW]. 2 156 39.778 T 13-10-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RA13_20995 a8e3fa57197acaf7be6d299f597cd7ce 160 SUPERFAMILY SSF55874 31 137 1.26E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_20995 a8e3fa57197acaf7be6d299f597cd7ce 160 TIGRFAM TIGR01924 rsbW_low_gc: anti-sigma B factor 1 159 1.5E-84 T 13-10-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RA13_16735 207ff55f9fa6b5b77659de2adedb1116 247 Pfam PF06570 Protein of unknown function (DUF1129) 2 103 2.5E-8 T 13-10-2018 IPR009214 Protein of unknown function DUF1129 RA13_16735 207ff55f9fa6b5b77659de2adedb1116 247 SUPERFAMILY SSF158560 1 71 1.03E-14 T 13-10-2018 RA13_17035 97581ebb8786e48477fc21b299abfa6d 266 Pfam PF01695 IstB-like ATP binding protein 116 229 2.2E-9 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 RA13_17035 97581ebb8786e48477fc21b299abfa6d 266 SUPERFAMILY SSF52540 93 263 2.48E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17035 97581ebb8786e48477fc21b299abfa6d 266 Gene3D G3DSA:3.40.50.300 61 248 3.0E-35 T 13-10-2018 RA13_17035 97581ebb8786e48477fc21b299abfa6d 266 SMART SM00382 116 256 1.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_10055 710840241b319262a2ddebb6edda3ef8 491 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 7 485 60.449 T 13-10-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 RA13_10055 710840241b319262a2ddebb6edda3ef8 491 Pfam PF02347 Glycine cleavage system P-protein 51 300 2.1E-9 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RA13_10055 710840241b319262a2ddebb6edda3ef8 491 Gene3D G3DSA:3.40.640.10 86 314 1.5E-59 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_10055 710840241b319262a2ddebb6edda3ef8 491 Gene3D G3DSA:3.90.1150.10 338 470 2.8E-48 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_10055 710840241b319262a2ddebb6edda3ef8 491 SUPERFAMILY SSF53383 19 483 3.75E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_15800 cb5c8a82828bc8080916a206271235e8 68 Pfam PF09963 Uncharacterized protein conserved in bacteria (DUF2197) 1 56 1.9E-30 T 13-10-2018 IPR019241 Protein of unknown function DUF2197 RA13_09770 9c3684daa14b671bb6d0c4054636981e 293 Gene3D G3DSA:3.30.70.120 203 278 2.2E-24 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_09770 9c3684daa14b671bb6d0c4054636981e 293 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 231 285 1.9E-21 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 RA13_09770 9c3684daa14b671bb6d0c4054636981e 293 PIRSF PIRSF006483 1 292 4.5E-88 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_09770 9c3684daa14b671bb6d0c4054636981e 293 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 19 225 3.1E-62 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_21050 05098dab551ab920c6f621855b0568f7 199 Pfam PF01694 Rhomboid family 54 195 1.5E-39 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RA13_21050 05098dab551ab920c6f621855b0568f7 199 SUPERFAMILY SSF144091 12 195 4.97E-40 T 13-10-2018 RA13_21050 05098dab551ab920c6f621855b0568f7 199 Gene3D G3DSA:1.20.1540.10 9 198 6.4E-43 T 13-10-2018 IPR035952 Rhomboid-like superfamily RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 Gene3D G3DSA:3.40.50.620 1 160 1.6E-55 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 157 1.3E-60 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 64 5.0E-18 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 Pfam PF01467 Cytidylyltransferase-like 7 134 2.3E-19 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 1 78 0.008 T 13-10-2018 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 34.814 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 6.0E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 6.0E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 6.0E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 6.0E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 6.0E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RA13_15680 f8150cfcd250a6f2f74a52d72697dd7e 161 SUPERFAMILY SSF52374 4 150 2.14E-41 T 13-10-2018 RA13_10545 920e7d06970c1b0c09297ac53eff1b25 185 Pfam PF00293 NUDIX domain 42 156 1.0E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RA13_10545 920e7d06970c1b0c09297ac53eff1b25 185 Gene3D G3DSA:3.90.79.10 3 185 6.5E-57 T 13-10-2018 RA13_10545 920e7d06970c1b0c09297ac53eff1b25 185 PRINTS PR00502 NUDIX hydrolase family signature 86 101 2.2E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RA13_10545 920e7d06970c1b0c09297ac53eff1b25 185 PRINTS PR00502 NUDIX hydrolase family signature 72 86 2.2E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RA13_10545 920e7d06970c1b0c09297ac53eff1b25 185 ProSitePatterns PS00893 Nudix box signature. 77 98 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RA13_10545 920e7d06970c1b0c09297ac53eff1b25 185 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 8 177 2.9E-23 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 RA13_10545 920e7d06970c1b0c09297ac53eff1b25 185 SUPERFAMILY SSF55811 7 177 6.09E-50 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 313 324 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 Gene3D G3DSA:3.40.309.10 289 479 3.4E-190 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 Hamap MF_00733 1-pyrroline-5-carboxylate dehydrogenase [rocA]. 1 515 66.555 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 Pfam PF00171 Aldehyde dehydrogenase family 49 510 1.9E-160 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 285 292 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 SUPERFAMILY SSF53720 5 511 5.63E-158 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 Gene3D G3DSA:3.40.605.10 39 502 3.4E-190 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_18585 23c03141d1e03856afb6055c75dd817b 515 TIGRFAM TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase 5 514 4.1E-256 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 Gene3D G3DSA:3.40.50.1170 1 199 1.4E-69 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 6 14 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 78 88 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 PIRSF PIRSF001220 1 326 1.4E-102 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 SMART SM00870 3 315 3.1E-120 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 SUPERFAMILY SSF53774 1 326 4.45E-99 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 PIRSF PIRSF500176 1 324 1.3E-111 T 13-10-2018 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 5.8E-16 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 PRINTS PR00139 Asparaginase/glutaminase family signature 77 95 5.8E-16 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 PRINTS PR00139 Asparaginase/glutaminase family signature 252 270 5.8E-16 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 Gene3D G3DSA:3.40.50.40 200 327 6.6E-36 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 1 327 1.4E-141 T 13-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 RA13_10560 720f15ef0d1f389b67c24bf1f6165d81 328 Pfam PF00710 Asparaginase, N-terminal 3 186 3.6E-65 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 RA13_12940 be176e34109d665b67baa5fa62820841 268 Gene3D G3DSA:3.60.15.10 29 264 2.1E-80 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_12940 be176e34109d665b67baa5fa62820841 268 ProSitePatterns PS00744 Beta-lactamases class B signature 2. 193 205 - T 13-10-2018 IPR001018 Beta-lactamase, class-B, conserved site GO:0008270|GO:0008800|GO:0017001 RA13_12940 be176e34109d665b67baa5fa62820841 268 SUPERFAMILY SSF56281 51 258 2.66E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_12940 be176e34109d665b67baa5fa62820841 268 PIRSF PIRSF500176 19 143 6.6E-4 T 13-10-2018 RA13_12940 be176e34109d665b67baa5fa62820841 268 PIRSF PIRSF500176 211 246 140.0 T 13-10-2018 RA13_12940 be176e34109d665b67baa5fa62820841 268 PIRSF PIRSF001220 19 138 2.5E-5 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_12940 be176e34109d665b67baa5fa62820841 268 PIRSF PIRSF001220 212 245 1100.0 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_12940 be176e34109d665b67baa5fa62820841 268 Pfam PF00753 Metallo-beta-lactamase superfamily 77 244 2.7E-8 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_12940 be176e34109d665b67baa5fa62820841 268 SMART SM00849 73 244 6.5E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_03825 aa14e0aaac5cf2f4e38ba8617080cea0 487 SUPERFAMILY SSF54862 2 485 2.3E-159 T 13-10-2018 RA13_03825 aa14e0aaac5cf2f4e38ba8617080cea0 487 Gene3D G3DSA:3.30.70.20 1 311 9.5E-99 T 13-10-2018 RA13_03825 aa14e0aaac5cf2f4e38ba8617080cea0 487 Pfam PF13247 4Fe-4S dicluster domain 172 269 5.9E-37 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RA13_03825 aa14e0aaac5cf2f4e38ba8617080cea0 487 Gene3D G3DSA:1.10.3650.10 356 434 8.0E-28 T 13-10-2018 IPR038262 Nitrate reductase beta, C-terminal domain superfamily KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 RA13_03825 aa14e0aaac5cf2f4e38ba8617080cea0 487 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 484 7.7E-287 T 13-10-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 RA13_03825 aa14e0aaac5cf2f4e38ba8617080cea0 487 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 356 436 5.0E-29 T 13-10-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 RA13_11595 170192dd97035992d92f0b1e8c2f22df 64 Pfam PF17431 Uncharacterized ympT 1 62 1.4E-32 T 13-10-2018 IPR035403 Uncharacterized protein YmpT RA13_11595 170192dd97035992d92f0b1e8c2f22df 64 ProDom PD054146 YPMT TRANSMEMBRANE MEMBRANE 1 62 5.0E-22 T 13-10-2018 IPR035403 Uncharacterized protein YmpT RA13_07660 1f9c8ef476dc8d547b25f93dbe499aa3 511 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 8 489 3.4E-198 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RA13_07660 1f9c8ef476dc8d547b25f93dbe499aa3 511 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 46 489 1.1E-182 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RA13_07660 1f9c8ef476dc8d547b25f93dbe499aa3 511 ProSitePatterns PS01303 BCCT family of transporters signature. 311 320 - T 13-10-2018 IPR018093 BCCT transporter, conserved site RA13_03390 0b3d35e6acb8aee75374c660229c24b4 513 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 33 434 3.8E-99 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_03390 0b3d35e6acb8aee75374c660229c24b4 513 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 416 436 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site RA13_03390 0b3d35e6acb8aee75374c660229c24b4 513 Pfam PF00474 Sodium:solute symporter family 33 434 1.5E-135 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_03390 0b3d35e6acb8aee75374c660229c24b4 513 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 148 173 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site RA13_03390 0b3d35e6acb8aee75374c660229c24b4 513 Gene3D G3DSA:1.20.1730.10 8 496 2.4E-68 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RA13_15495 ccab8b5227abd31cbd20dc57cb69f45b 230 SUPERFAMILY SSF51419 3 222 5.63E-70 T 13-10-2018 IPR029066 PLP-binding barrel RA13_15495 ccab8b5227abd31cbd20dc57cb69f45b 230 PIRSF PIRSF004848 2 227 8.2E-66 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RA13_15495 ccab8b5227abd31cbd20dc57cb69f45b 230 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 5 223 29.471 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RA13_15495 ccab8b5227abd31cbd20dc57cb69f45b 230 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 74 88 - T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RA13_15495 ccab8b5227abd31cbd20dc57cb69f45b 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 4 223 5.8E-51 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RA13_15495 ccab8b5227abd31cbd20dc57cb69f45b 230 Pfam PF01168 Alanine racemase, N-terminal domain 7 222 1.8E-18 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RA13_15495 ccab8b5227abd31cbd20dc57cb69f45b 230 Gene3D G3DSA:3.20.20.10 2 226 1.3E-76 T 13-10-2018 IPR029066 PLP-binding barrel RA13_04815 b5d0c4d8aabc065add585431eb1e7994 86 Pfam PF04316 Anti-sigma-28 factor, FlgM 32 81 9.2E-17 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal RA13_04815 b5d0c4d8aabc065add585431eb1e7994 86 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 84 1.0E-18 T 13-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 RA13_04815 b5d0c4d8aabc065add585431eb1e7994 86 SUPERFAMILY SSF101498 1 83 5.49E-20 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily RA13_14995 257fa4d257076d32921b638a62bc9aef 259 Pfam PF01311 Bacterial export proteins, family 1 9 243 1.4E-72 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RA13_14995 257fa4d257076d32921b638a62bc9aef 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 75 94 3.4E-29 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RA13_14995 257fa4d257076d32921b638a62bc9aef 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 17 38 3.4E-29 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RA13_14995 257fa4d257076d32921b638a62bc9aef 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 178 200 3.4E-29 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RA13_14995 257fa4d257076d32921b638a62bc9aef 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 200 219 3.4E-29 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 RA13_14995 257fa4d257076d32921b638a62bc9aef 259 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 10 253 6.9E-70 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 SUPERFAMILY SSF53623 3 299 2.54E-92 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 SUPERFAMILY SSF53244 299 429 2.56E-24 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 TIGRFAM TIGR01499 folC: bifunctional protein FolC 24 428 8.4E-131 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 Pfam PF08245 Mur ligase middle domain 46 274 7.4E-15 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 Pfam PF02875 Mur ligase family, glutamate ligase domain 299 376 5.8E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 Gene3D G3DSA:3.40.1190.10 3 300 4.2E-103 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 PIRSF PIRSF001563 1 431 2.0E-154 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 Gene3D G3DSA:3.90.190.20 301 430 1.6E-27 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RA13_08695 7e6c7fb16c50a446aac3ed61a02cd467 431 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 143 158 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 RA13_03170 14fba1e23add9f70966dcd68c73f3f0d 258 Pfam PF12679 ABC-2 family transporter protein 5 254 3.5E-11 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RA13_13595 aa549cb6ac9e898ffb8d773d0b0e13c9 204 SUPERFAMILY SSF55811 65 185 1.26E-6 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RA13_13595 aa549cb6ac9e898ffb8d773d0b0e13c9 204 Gene3D G3DSA:3.90.79.10 1 204 3.1E-58 T 13-10-2018 RA13_09075 f62a05201ee0dcd32a255de5e09d9a6a 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 213 3.5E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_09075 f62a05201ee0dcd32a255de5e09d9a6a 216 SUPERFAMILY SSF161098 12 214 1.24E-47 T 13-10-2018 IPR035906 MetI-like superfamily RA13_09075 f62a05201ee0dcd32a255de5e09d9a6a 216 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 107 6.0E-30 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RA13_09075 f62a05201ee0dcd32a255de5e09d9a6a 216 Gene3D G3DSA:1.10.3720.10 1 215 3.2E-57 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05545 1667cd6c07e0a4a3b4be39b89f22266b 186 SUPERFAMILY SSF46785 9 160 2.68E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05545 1667cd6c07e0a4a3b4be39b89f22266b 186 Pfam PF12802 MarR family 28 79 1.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05545 1667cd6c07e0a4a3b4be39b89f22266b 186 PIRSF PIRSF006707 2 183 3.2E-47 T 13-10-2018 IPR026282 DNA-binding protein, MJ1563 type RA13_05545 1667cd6c07e0a4a3b4be39b89f22266b 186 Gene3D G3DSA:1.10.10.10 7 91 2.4E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15785 0235c526df0af93876d9d780ee68b2d4 161 ProDom PD094668 YLAL SIMILAR MW0994 BH2628 SE0810 SA0960 3 160 2.0E-56 T 13-10-2018 IPR020229 Uncharacterised protein YlaL RA13_11525 05218ebc9976eb29971303ba487acf48 144 Pfam PF06491 Disulphide isomerase 8 144 1.5E-62 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family RA13_11525 05218ebc9976eb29971303ba487acf48 144 Gene3D G3DSA:3.40.30.10 25 144 2.1E-56 T 13-10-2018 RA13_11525 05218ebc9976eb29971303ba487acf48 144 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 8 144 6.2E-66 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family RA13_11730 30da5f0d262c0d9b398d14e1cf768c81 229 Gene3D G3DSA:3.40.1080.10 4 220 6.9E-71 T 13-10-2018 RA13_11730 30da5f0d262c0d9b398d14e1cf768c81 229 SMART SM00882 7 219 7.7E-70 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_11730 30da5f0d262c0d9b398d14e1cf768c81 229 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 8 219 2.4E-65 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 RA13_11730 30da5f0d262c0d9b398d14e1cf768c81 229 Pfam PF01144 Coenzyme A transferase 8 218 7.5E-66 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_11730 30da5f0d262c0d9b398d14e1cf768c81 229 SUPERFAMILY SSF100950 5 226 6.91E-68 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_17350 2d62e0b6bff23299b001b89a96e049be 171 Gene3D G3DSA:3.90.1140.10 1 170 3.3E-44 T 13-10-2018 RA13_17350 2d62e0b6bff23299b001b89a96e049be 171 Hamap MF_01444 Putative phosphoesterase . 1 168 39.655 T 13-10-2018 IPR022932 Putative phosphoesterase YjcG RA13_17350 2d62e0b6bff23299b001b89a96e049be 171 Pfam PF13563 2'-5' RNA ligase superfamily 11 151 2.7E-22 T 13-10-2018 RA13_17350 2d62e0b6bff23299b001b89a96e049be 171 SUPERFAMILY SSF55144 1 170 2.96E-35 T 13-10-2018 IPR009097 Cyclic phosphodiesterase RA13_00785 be87820132e250cd9fbb5a011a48d905 316 Gene3D G3DSA:3.30.540.10 5 137 1.5E-15 T 13-10-2018 RA13_00785 be87820132e250cd9fbb5a011a48d905 316 Gene3D G3DSA:3.40.190.80 175 299 9.9E-13 T 13-10-2018 RA13_00785 be87820132e250cd9fbb5a011a48d905 316 PRINTS PR00377 Inositol monophosphatase superfamily signature 80 96 4.4E-9 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_00785 be87820132e250cd9fbb5a011a48d905 316 PRINTS PR00377 Inositol monophosphatase superfamily signature 241 265 4.4E-9 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_00785 be87820132e250cd9fbb5a011a48d905 316 PRINTS PR00377 Inositol monophosphatase superfamily signature 36 56 4.4E-9 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_00785 be87820132e250cd9fbb5a011a48d905 316 Pfam PF00459 Inositol monophosphatase family 31 300 2.0E-16 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RA13_00785 be87820132e250cd9fbb5a011a48d905 316 SUPERFAMILY SSF56655 20 296 5.1E-26 T 13-10-2018 RA13_12605 074a463ea87af20427efb821a3ea681f 548 Gene3D G3DSA:3.30.300.310 441 544 4.6E-33 T 13-10-2018 RA13_12605 074a463ea87af20427efb821a3ea681f 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 195 206 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_12605 074a463ea87af20427efb821a3ea681f 548 SUPERFAMILY SSF56801 5 541 2.75E-160 T 13-10-2018 RA13_12605 074a463ea87af20427efb821a3ea681f 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 454 529 2.3E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_12605 074a463ea87af20427efb821a3ea681f 548 Pfam PF00501 AMP-binding enzyme 13 445 1.8E-114 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_12605 074a463ea87af20427efb821a3ea681f 548 Gene3D G3DSA:3.40.50.12780 2 435 5.0E-123 T 13-10-2018 RA13_07480 cccd0f08ad8a3a4918009766a2b9ec9c 194 SUPERFAMILY SSF53335 6 150 2.03E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_07480 cccd0f08ad8a3a4918009766a2b9ec9c 194 Pfam PF06962 Putative rRNA methylase 48 187 1.2E-48 T 13-10-2018 IPR010719 Putative rRNA methylase RA13_07480 cccd0f08ad8a3a4918009766a2b9ec9c 194 Gene3D G3DSA:3.40.50.150 1 194 8.6E-75 T 13-10-2018 RA13_00265 27613e5154d2b9d46b41f6bc05f5aaaf 455 Gene3D G3DSA:3.30.390.10 20 423 1.6E-181 T 13-10-2018 IPR029017 Enolase-like, N-terminal RA13_00265 27613e5154d2b9d46b41f6bc05f5aaaf 455 SUPERFAMILY SSF51604 149 425 2.12E-84 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_00265 27613e5154d2b9d46b41f6bc05f5aaaf 455 TIGRFAM TIGR03247 glucar-dehydr: glucarate dehydratase 16 455 4.3E-267 T 13-10-2018 IPR017653 Glucarate dehydratase GO:0000287|GO:0008872|GO:0019394 KEGG: 00053+4.2.1.40|MetaCyc: PWY-6499 RA13_00265 27613e5154d2b9d46b41f6bc05f5aaaf 455 Pfam PF13378 Enolase C-terminal domain-like 198 415 7.2E-37 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RA13_00265 27613e5154d2b9d46b41f6bc05f5aaaf 455 Gene3D G3DSA:3.20.20.120 149 409 1.6E-181 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_00265 27613e5154d2b9d46b41f6bc05f5aaaf 455 SMART SM00922 195 295 7.2E-17 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RA13_00265 27613e5154d2b9d46b41f6bc05f5aaaf 455 SUPERFAMILY SSF54826 18 147 1.15E-31 T 13-10-2018 RA13_09070 d9b33dc9ef66fde5a4666c8d658ff840 218 SUPERFAMILY SSF161098 15 202 2.22E-39 T 13-10-2018 IPR035906 MetI-like superfamily RA13_09070 d9b33dc9ef66fde5a4666c8d658ff840 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 211 1.5E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_09070 d9b33dc9ef66fde5a4666c8d658ff840 218 Gene3D G3DSA:1.10.3720.10 6 217 8.2E-46 T 13-10-2018 IPR035906 MetI-like superfamily RA13_09070 d9b33dc9ef66fde5a4666c8d658ff840 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 3.0E-28 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 SUPERFAMILY SSF56784 5 214 7.6E-61 T 13-10-2018 IPR036412 HAD-like superfamily RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 Gene3D G3DSA:1.10.150.240 21 84 5.5E-52 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.8E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 1.8E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 1.8E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 1.8E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 10 185 5.5E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 185 3.8E-56 T 13-10-2018 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 Gene3D G3DSA:3.40.50.1000 10 205 5.5E-52 T 13-10-2018 IPR023214 HAD superfamily RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 60 179 1.5E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_05025 193204ee9997ddcba0e898bb805bc4ed 217 Hamap MF_01250 Pyrophosphatase PpaX [ppaX]. 5 217 44.388 T 13-10-2018 IPR023733 Pyrophosphatase PpaX GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_15900 f5f56b2a76d8ccdc81744bfdedc27404 371 Gene3D G3DSA:3.40.50.970 5 371 3.4E-122 T 13-10-2018 RA13_15900 f5f56b2a76d8ccdc81744bfdedc27404 371 Pfam PF00676 Dehydrogenase E1 component 53 343 4.5E-102 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RA13_15900 f5f56b2a76d8ccdc81744bfdedc27404 371 SUPERFAMILY SSF52518 11 365 3.69E-99 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold RA13_15900 f5f56b2a76d8ccdc81744bfdedc27404 371 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 24 364 3.6E-143 T 13-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RA13_00715 d5cbd96e1513795cd350d83b4e2f8477 305 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 189 206 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 RA13_00715 d5cbd96e1513795cd350d83b4e2f8477 305 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 10 300 1.5E-137 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 RA13_00715 d5cbd96e1513795cd350d83b4e2f8477 305 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 6 299 41.526 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 RA13_00715 d5cbd96e1513795cd350d83b4e2f8477 305 SUPERFAMILY SSF53697 9 252 8.9E-71 T 13-10-2018 RA13_00715 d5cbd96e1513795cd350d83b4e2f8477 305 Pfam PF01380 SIS domain 133 200 1.1E-10 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RA13_00715 d5cbd96e1513795cd350d83b4e2f8477 305 Gene3D G3DSA:3.40.50.10490 3 222 3.2E-78 T 13-10-2018 RA13_00715 d5cbd96e1513795cd350d83b4e2f8477 305 Gene3D G3DSA:1.10.8.1080 223 301 4.8E-28 T 13-10-2018 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 Gene3D G3DSA:1.10.1900.20 56 118 3.4E-29 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 70 4.0E-14 T 13-10-2018 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 Pfam PF00453 Ribosomal protein L20 3 109 4.4E-50 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 SUPERFAMILY SSF74731 2 116 1.24E-50 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 4.0E-51 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.05 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 3.8E-41 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 3.8E-41 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 3.8E-41 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_08275 bad157a078b6487f071453d0e8d18da0 119 Gene3D G3DSA:1.10.720.90 2 55 9.3E-27 T 13-10-2018 RA13_21765 48a921f7b0521fb9727f1564d4ebf2ae 287 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 270 3.0E-54 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_21765 48a921f7b0521fb9727f1564d4ebf2ae 287 Gene3D G3DSA:3.40.190.10 133 234 1.7E-79 T 13-10-2018 RA13_21765 48a921f7b0521fb9727f1564d4ebf2ae 287 Gene3D G3DSA:3.40.190.10 45 267 1.7E-79 T 13-10-2018 RA13_21765 48a921f7b0521fb9727f1564d4ebf2ae 287 SMART SM00062 46 272 1.3E-71 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RA13_21765 48a921f7b0521fb9727f1564d4ebf2ae 287 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 72 85 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site RA13_21765 48a921f7b0521fb9727f1564d4ebf2ae 287 SUPERFAMILY SSF53850 10 270 7.96E-57 T 13-10-2018 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 65 84 3.7E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 193 203 3.7E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 3.7E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 140 161 3.7E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 Pfam PF00579 tRNA synthetases class I (W and Y) 4 281 2.7E-82 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 Gene3D G3DSA:3.40.50.620 5 324 4.1E-136 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 326 42.056 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 Gene3D G3DSA:1.10.240.10 184 294 4.1E-136 T 13-10-2018 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 20 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 325 9.5E-125 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RA13_17605 265ea3208b83cfabee5e6e213b575aef 330 SUPERFAMILY SSF52374 4 325 7.67E-98 T 13-10-2018 RA13_18490 379eb402335d3ec78fe521417de40331 282 Pfam PF01522 Polysaccharide deacetylase 81 205 3.9E-28 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_18490 379eb402335d3ec78fe521417de40331 282 SUPERFAMILY SSF88713 78 274 8.4E-49 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_18490 379eb402335d3ec78fe521417de40331 282 Gene3D G3DSA:3.20.20.370 72 279 3.8E-54 T 13-10-2018 RA13_16710 788154b2945721fc5980aa9eb258894d 105 Pfam PF00893 Small Multidrug Resistance protein 3 94 2.0E-29 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RA13_16710 788154b2945721fc5980aa9eb258894d 105 SUPERFAMILY SSF103481 6 102 1.44E-18 T 13-10-2018 RA13_16710 788154b2945721fc5980aa9eb258894d 105 Gene3D G3DSA:1.10.3730.20 1 105 5.5E-26 T 13-10-2018 RA13_16000 ab0ea171a0b74b360a9aaf727e7d37ce 303 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 301 7.5E-110 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RA13_16000 ab0ea171a0b74b360a9aaf727e7d37ce 303 Pfam PF00294 pfkB family carbohydrate kinase 13 284 1.5E-62 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RA13_16000 ab0ea171a0b74b360a9aaf727e7d37ce 303 Gene3D G3DSA:3.40.1190.20 1 303 1.3E-107 T 13-10-2018 IPR029056 Ribokinase-like RA13_16000 ab0ea171a0b74b360a9aaf727e7d37ce 303 SUPERFAMILY SSF53613 1 301 3.43E-67 T 13-10-2018 IPR029056 Ribokinase-like RA13_16000 ab0ea171a0b74b360a9aaf727e7d37ce 303 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 301 6.1E-109 T 13-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 RA13_16000 ab0ea171a0b74b360a9aaf727e7d37ce 303 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 243 256 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RA13_16000 ab0ea171a0b74b360a9aaf727e7d37ce 303 PIRSF PIRSF000535 1 303 1.3E-106 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RA13_09920 160b76834608dd5ecedbf3406a07e0d7 57 Pfam PF10958 Protein of unknown function (DUF2759) 6 55 1.2E-25 T 13-10-2018 IPR024490 Protein of unknown function DUF2759 RA13_09920 160b76834608dd5ecedbf3406a07e0d7 57 ProDom PD052097 RELATED ALKALIPHILY YQGW MEMBRANE TRANSMEMBRANE SPANNING 1 57 1.0E-22 T 13-10-2018 IPR024490 Protein of unknown function DUF2759 RA13_05730 787d76b4614ff2b4c428b577f516ed31 141 SUPERFAMILY SSF54593 10 122 4.83E-20 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_05730 787d76b4614ff2b4c428b577f516ed31 141 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 120 3.7E-10 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_05730 787d76b4614ff2b4c428b577f516ed31 141 Gene3D G3DSA:3.10.180.10 12 135 9.7E-21 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 ProSitePatterns PS01143 Ribosomal protein L31 signature. 34 55 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 Gene3D G3DSA:2.30.170.50 1 66 3.9E-31 T 13-10-2018 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 TIGRFAM TIGR00105 L31: ribosomal protein bL31 2 65 5.3E-30 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 PRINTS PR01249 Ribosomal protein L31 signature 2 19 4.4E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 PRINTS PR01249 Ribosomal protein L31 signature 30 45 4.4E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 PRINTS PR01249 Ribosomal protein L31 signature 45 63 4.4E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 Pfam PF01197 Ribosomal protein L31 2 64 2.4E-30 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 66 27.009 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_03925 bcd38511b5f7fd4b91c4505de7026e89 66 SUPERFAMILY SSF143800 1 65 1.57E-24 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_10065 4b616cfe65712df6cceb8626858cb757 278 Hamap MF_02118 Octanoyltransferase LipM [lipM]. 3 278 68.669 T 13-10-2018 IPR024898 Octanoyltransferase LipM GO:0009107|GO:0009249|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RA13_10065 4b616cfe65712df6cceb8626858cb757 278 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 189 5.2E-31 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RA13_10065 4b616cfe65712df6cceb8626858cb757 278 SUPERFAMILY SSF55681 5 278 1.24E-69 T 13-10-2018 RA13_10065 4b616cfe65712df6cceb8626858cb757 278 Gene3D G3DSA:3.30.930.10 5 278 1.9E-69 T 13-10-2018 RA13_01180 828fed9e58ae69289521f5dc4095cbc7 232 SUPERFAMILY SSF53448 3 223 8.34E-62 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_01180 828fed9e58ae69289521f5dc4095cbc7 232 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 100 107 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RA13_01180 828fed9e58ae69289521f5dc4095cbc7 232 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 2 223 42.804 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RA13_01180 828fed9e58ae69289521f5dc4095cbc7 232 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 224 9.8E-85 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RA13_01180 828fed9e58ae69289521f5dc4095cbc7 232 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 223 8.2E-82 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RA13_01180 828fed9e58ae69289521f5dc4095cbc7 232 Gene3D G3DSA:3.90.550.10 1 232 1.4E-86 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_07975 40e4217b7499f4227eb581cac3daa943 531 Gene3D G3DSA:3.20.20.140 61 484 3.0E-137 T 13-10-2018 RA13_07975 40e4217b7499f4227eb581cac3daa943 531 Gene3D G3DSA:3.10.310.70 79 195 3.0E-137 T 13-10-2018 RA13_07975 40e4217b7499f4227eb581cac3daa943 531 SUPERFAMILY SSF51338 4 526 1.54E-16 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_07975 40e4217b7499f4227eb581cac3daa943 531 Gene3D G3DSA:2.30.40.10 8 502 3.0E-137 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_07975 40e4217b7499f4227eb581cac3daa943 531 Pfam PF07969 Amidohydrolase family 49 525 4.3E-123 T 13-10-2018 IPR013108 Amidohydrolase 3 RA13_07975 40e4217b7499f4227eb581cac3daa943 531 SUPERFAMILY SSF51556 60 480 4.16E-27 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 Pfam PF01706 FliG C-terminal domain 222 328 1.3E-42 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 SUPERFAMILY SSF48029 118 329 3.53E-70 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 Gene3D G3DSA:1.10.220.30 199 338 2.0E-50 T 13-10-2018 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 230 250 3.9E-79 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 9 25 3.9E-79 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 276 302 3.9E-79 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 252 272 3.9E-79 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 38 64 3.9E-79 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 118 141 3.9E-79 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PRINTS PR00954 Flagellar motor switch protein FliG signature 199 224 3.9E-79 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 PIRSF PIRSF003161 3 338 7.4E-128 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 Pfam PF14841 FliG middle domain 119 193 6.2E-31 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 1 338 3.6E-166 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 Gene3D G3DSA:1.10.220.30 1 88 1.7E-18 T 13-10-2018 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 Gene3D G3DSA:1.10.220.30 107 198 5.9E-34 T 13-10-2018 RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 Pfam PF14842 FliG N-terminal domain 9 111 2.4E-36 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain RA13_15075 b6fc74bea03946e43b427a8de9bc90a8 338 SUPERFAMILY SSF48029 10 104 8.89E-21 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 22 31 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 SMART SM00387 24 177 7.4E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 150 1.1E-12 T 13-10-2018 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Gene3D G3DSA:3.30.230.80 235 406 2.8E-55 T 13-10-2018 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Gene3D G3DSA:1.20.120.790 495 626 6.7E-37 T 13-10-2018 IPR037196 HSP90, C-terminal domain RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PIRSF PIRSF002583 1 626 2.0E-205 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Gene3D G3DSA:3.30.565.10 1 228 3.5E-72 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 626 27.266 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 SUPERFAMILY SSF110942 511 625 3.92E-30 T 13-10-2018 IPR037196 HSP90, C-terminal domain RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Gene3D G3DSA:3.40.50.11260 408 494 1.4E-27 T 13-10-2018 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 SUPERFAMILY SSF55874 2 209 3.8E-61 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Pfam PF00183 Hsp90 protein 184 229 2.1E-6 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 Pfam PF00183 Hsp90 protein 216 625 2.7E-113 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PRINTS PR00775 90kDa heat shock protein signature 2 22 1.9E-53 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PRINTS PR00775 90kDa heat shock protein signature 23 45 1.9E-53 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PRINTS PR00775 90kDa heat shock protein signature 72 89 1.9E-53 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PRINTS PR00775 90kDa heat shock protein signature 188 206 1.9E-53 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PRINTS PR00775 90kDa heat shock protein signature 90 107 1.9E-53 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PRINTS PR00775 90kDa heat shock protein signature 165 182 1.9E-53 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 PRINTS PR00775 90kDa heat shock protein signature 115 137 1.9E-53 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RA13_02530 554c090fcb77d3422d5fbccdebfb9360 626 SUPERFAMILY SSF54211 236 488 1.82E-81 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 Gene3D G3DSA:1.20.58.410 2 101 1.5E-8 T 13-10-2018 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 SMART SM00937 62 177 9.3E-62 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 Gene3D G3DSA:3.30.160.20 209 295 8.2E-96 T 13-10-2018 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 Pfam PF03462 PCRF domain 8 202 4.1E-74 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 355 3.0E-172 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 SUPERFAMILY SSF75620 8 351 3.27E-134 T 13-10-2018 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 Pfam PF00472 RF-1 domain 210 319 1.3E-40 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 355 40.378 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RA13_03955 2ba808d0aef28e4cf16479a9310f71de 356 Gene3D G3DSA:3.30.70.1660 110 340 8.2E-96 T 13-10-2018 RA13_06225 0c0cb901b07999bc28c671a1b22d970f 221 Gene3D G3DSA:3.40.50.720 6 191 4.2E-26 T 13-10-2018 RA13_06225 0c0cb901b07999bc28c671a1b22d970f 221 TIGRFAM TIGR03882 cyclo_dehyd_2: bacteriocin biosynthesis cyclodehydratase domain 75 206 1.3E-14 T 13-10-2018 IPR022291 Bacteriocin biosynthesis, cyclodehydratase domain RA13_07965 ab56ff055e31228f710b28653c1cf2d2 71 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 45 59 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_07965 ab56ff055e31228f710b28653c1cf2d2 71 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 12 66 1.6E-21 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 RA13_07965 ab56ff055e31228f710b28653c1cf2d2 71 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 27 36 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_07965 ab56ff055e31228f710b28653c1cf2d2 71 Gene3D G3DSA:1.10.8.910 12 71 1.1E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily RA13_10970 0acba1fa51a694b1ab5a4af4928cf3e5 228 Hamap MF_00238 Cytidylate kinase [cmk]. 5 223 33.795 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RA13_10970 0acba1fa51a694b1ab5a4af4928cf3e5 228 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 217 1.0E-90 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RA13_10970 0acba1fa51a694b1ab5a4af4928cf3e5 228 SUPERFAMILY SSF52540 6 220 1.2E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10970 0acba1fa51a694b1ab5a4af4928cf3e5 228 Pfam PF02224 Cytidylate kinase 7 220 8.4E-81 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RA13_10970 0acba1fa51a694b1ab5a4af4928cf3e5 228 Gene3D G3DSA:3.40.50.300 1 225 6.8E-85 T 13-10-2018 RA13_04175 09f4a34ee977d7cf0edebaf6c97b3499 148 ProDom PD087515 YWNF MEMBRANE SYNTHASE BH1886 BETA-KETOACYL TRANSMEMBRANE 1 142 3.0E-43 T 13-10-2018 IPR020205 Uncharacterised protein family, YwnF, transmembrane RA13_04175 09f4a34ee977d7cf0edebaf6c97b3499 148 Pfam PF17370 Family of unknown function (DUF5392) 6 142 2.3E-54 T 13-10-2018 IPR020205 Uncharacterised protein family, YwnF, transmembrane RA13_21040 1fcb0a34eac564c2200dbe7354a92a51 338 SUPERFAMILY SSF89392 32 206 6.87E-24 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RA13_21040 1fcb0a34eac564c2200dbe7354a92a51 338 Gene3D G3DSA:2.50.20.10 31 213 1.1E-11 T 13-10-2018 RA13_16935 ddf5d663ab4778fc3c48bba9e4168136 219 SMART SM00257 160 218 2.3E-9 T 13-10-2018 IPR018392 LysM domain RA13_16935 ddf5d663ab4778fc3c48bba9e4168136 219 SUPERFAMILY SSF54106 158 218 3.01E-7 T 13-10-2018 RA13_16935 ddf5d663ab4778fc3c48bba9e4168136 219 Gene3D G3DSA:3.10.350.10 159 217 7.7E-14 T 13-10-2018 IPR036779 LysM domain superfamily RA13_16935 ddf5d663ab4778fc3c48bba9e4168136 219 Pfam PF01476 LysM domain 161 218 7.1E-20 T 13-10-2018 IPR018392 LysM domain RA13_12745 173ad384a2144c9ce6d547d874714f80 125 Gene3D G3DSA:2.60.40.790 30 113 8.2E-8 T 13-10-2018 IPR008978 HSP20-like chaperone RA13_12745 173ad384a2144c9ce6d547d874714f80 125 SUPERFAMILY SSF49764 29 115 1.33E-7 T 13-10-2018 IPR008978 HSP20-like chaperone RA13_15835 f9b04799c9e2e8fa1d76ff11880aeec1 305 Pfam PF04072 Leucine carboxyl methyltransferase 12 206 1.9E-46 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RA13_15835 f9b04799c9e2e8fa1d76ff11880aeec1 305 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 9 280 4.6E-38 T 13-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RA13_15835 f9b04799c9e2e8fa1d76ff11880aeec1 305 Gene3D G3DSA:3.40.50.150 4 303 5.1E-42 T 13-10-2018 RA13_15835 f9b04799c9e2e8fa1d76ff11880aeec1 305 SUPERFAMILY SSF53335 8 304 1.25E-57 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_14505 0ed46ee7355740969097fc6f92c4e744 314 SUPERFAMILY SSF52540 9 153 1.16E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_14505 0ed46ee7355740969097fc6f92c4e744 314 Gene3D G3DSA:3.40.50.300 12 290 1.2E-106 T 13-10-2018 RA13_14505 0ed46ee7355740969097fc6f92c4e744 314 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 300 30.926 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RA13_14505 0ed46ee7355740969097fc6f92c4e744 314 Pfam PF01715 IPP transferase 41 285 8.5E-87 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RA13_14505 0ed46ee7355740969097fc6f92c4e744 314 Gene3D G3DSA:1.10.20.140 115 187 1.2E-106 T 13-10-2018 RA13_14505 0ed46ee7355740969097fc6f92c4e744 314 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 8 293 1.3E-122 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RA13_14505 0ed46ee7355740969097fc6f92c4e744 314 SUPERFAMILY SSF52540 6 218 6.63E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_17925 9816a0a00b392c7d6580a0202c04bc37 118 Hamap MF_01536 UPF0344 protein . 1 118 17.69 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 RA13_17925 9816a0a00b392c7d6580a0202c04bc37 118 ProDom PD067392 MEMBRANE UPF0344 TRANSMEMBRANE MW0851 BCE1257 SIMILAR YISL SAR0931 BCE33L1051 BT9727_1053 1 94 3.0E-43 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 RA13_17925 9816a0a00b392c7d6580a0202c04bc37 118 Pfam PF07457 Protein of unknown function (DUF1516) 2 108 1.3E-37 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 RA13_02800 f71b1f875b5b50fda2b3972feaabe725 310 SUPERFAMILY SSF103481 43 141 3.79E-9 T 13-10-2018 RA13_02800 f71b1f875b5b50fda2b3972feaabe725 310 SUPERFAMILY SSF103481 209 291 1.57E-12 T 13-10-2018 RA13_02800 f71b1f875b5b50fda2b3972feaabe725 310 Pfam PF00892 EamA-like transporter family 156 288 2.9E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_02800 f71b1f875b5b50fda2b3972feaabe725 310 Pfam PF00892 EamA-like transporter family 10 140 3.9E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_02260 5176d738acf69d6169388aa967dad186 56 TIGRFAM TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family 5 53 7.6E-21 T 13-10-2018 IPR025626 YyzF-like protein RA13_02260 5176d738acf69d6169388aa967dad186 56 Pfam PF14116 YyzF-like protein 7 54 1.1E-18 T 13-10-2018 IPR025626 YyzF-like protein RA13_21485 eeb7b66fc69ece522a47b99c47fd2164 317 Gene3D G3DSA:3.40.50.12260 187 289 1.7E-105 T 13-10-2018 RA13_21485 eeb7b66fc69ece522a47b99c47fd2164 317 Pfam PF01497 Periplasmic binding protein 57 291 5.0E-36 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_21485 eeb7b66fc69ece522a47b99c47fd2164 317 SUPERFAMILY SSF53807 39 306 3.45E-69 T 13-10-2018 RA13_21485 eeb7b66fc69ece522a47b99c47fd2164 317 Gene3D G3DSA:3.40.50.12250 48 300 1.7E-105 T 13-10-2018 RA13_08385 612f6f3ae99e2877413dc40179d9c631 384 Gene3D G3DSA:1.10.10.2840 246 367 6.1E-20 T 13-10-2018 RA13_08385 612f6f3ae99e2877413dc40179d9c631 384 Pfam PF13556 PucR C-terminal helix-turn-helix domain 306 362 2.1E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RA13_08385 612f6f3ae99e2877413dc40179d9c631 384 Pfam PF05651 Putative sugar diacid recognition 3 136 2.2E-42 T 13-10-2018 IPR008599 Putative sugar diacid recognition RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 Gene3D G3DSA:1.20.1080.10 1 241 5.4E-76 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 Pfam PF00230 Major intrinsic protein 3 230 7.1E-49 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 230 4.4E-68 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 ProSitePatterns PS00221 MIP family signature. 62 70 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 SUPERFAMILY SSF81338 2 234 9.29E-72 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 PRINTS PR00783 Major intrinsic protein family signature 81 100 2.8E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 PRINTS PR00783 Major intrinsic protein family signature 2 21 2.8E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 PRINTS PR00783 Major intrinsic protein family signature 44 68 2.8E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 PRINTS PR00783 Major intrinsic protein family signature 136 154 2.8E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 PRINTS PR00783 Major intrinsic protein family signature 213 233 2.8E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18710 70bcb88cc15fc47367b71962fa64715e 274 PRINTS PR00783 Major intrinsic protein family signature 166 188 2.8E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RA13_18230 46a83efa5bc7f2759cae37ac3587007f 470 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 5 469 5.3E-181 T 13-10-2018 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RA13_18230 46a83efa5bc7f2759cae37ac3587007f 470 Gene3D G3DSA:1.10.3110.10 110 203 2.2E-154 T 13-10-2018 RA13_18230 46a83efa5bc7f2759cae37ac3587007f 470 SUPERFAMILY SSF51905 6 463 5.0E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18230 46a83efa5bc7f2759cae37ac3587007f 470 SUPERFAMILY SSF54373 308 415 6.87E-34 T 13-10-2018 RA13_18230 46a83efa5bc7f2759cae37ac3587007f 470 Pfam PF01593 Flavin containing amine oxidoreductase 15 465 1.8E-75 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RA13_18230 46a83efa5bc7f2759cae37ac3587007f 470 Gene3D G3DSA:3.50.50.60 9 456 2.2E-154 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_18230 46a83efa5bc7f2759cae37ac3587007f 470 Gene3D G3DSA:3.90.660.20 44 414 2.2E-154 T 13-10-2018 RA13_04485 016c56e68cfd09c10edd99b25ce02771 88 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 84 4.7E-16 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RA13_04485 016c56e68cfd09c10edd99b25ce02771 88 SUPERFAMILY SSF52794 1 86 1.52E-19 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_04485 016c56e68cfd09c10edd99b25ce02771 88 Gene3D G3DSA:3.40.50.2300 1 88 3.8E-22 T 13-10-2018 RA13_18440 4d57408ac17ad72c60e1a51d507c8eb5 452 SUPERFAMILY SSF56059 194 423 8.32E-12 T 13-10-2018 RA13_18440 4d57408ac17ad72c60e1a51d507c8eb5 452 Pfam PF14398 YheC/D like ATP-grasp 185 439 3.2E-81 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D RA13_18290 4c011f09be165f69f68ece4ea72e08bc 171 Pfam PF17099 Tryptophan transporter TrpP 2 163 6.0E-68 T 13-10-2018 IPR031360 Tryptophan transporter TrpP RA13_18290 4c011f09be165f69f68ece4ea72e08bc 171 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 165 9.0E-62 T 13-10-2018 RA13_18290 4c011f09be165f69f68ece4ea72e08bc 171 Gene3D G3DSA:1.10.1760.20 1 165 1.1E-7 T 13-10-2018 RA13_00275 56d1af1442c02ad470ca313a9245de5d 488 Gene3D G3DSA:3.40.309.10 259 453 9.9E-168 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RA13_00275 56d1af1442c02ad470ca313a9245de5d 488 Pfam PF00171 Aldehyde dehydrogenase family 18 484 1.1E-172 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RA13_00275 56d1af1442c02ad470ca313a9245de5d 488 Gene3D G3DSA:3.40.605.10 14 482 9.9E-168 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RA13_00275 56d1af1442c02ad470ca313a9245de5d 488 SUPERFAMILY SSF53720 6 487 3.01E-163 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RA13_00275 56d1af1442c02ad470ca313a9245de5d 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RA13_00275 56d1af1442c02ad470ca313a9245de5d 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 PIRSF PIRSF016578 4 382 1.0E-38 T 13-10-2018 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 Gene3D G3DSA:1.10.540.10 5 122 4.8E-22 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 243 361 3.2E-19 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 SUPERFAMILY SSF56645 5 225 5.89E-39 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 Gene3D G3DSA:1.20.140.10 239 379 2.1E-30 T 13-10-2018 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 Gene3D G3DSA:2.40.110.10 135 225 1.3E-20 T 13-10-2018 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 SUPERFAMILY SSF47203 237 378 9.02E-26 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 96 6.0E-11 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RA13_21105 912f7f16bf678b4bbbea6c2912c911e7 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 217 9.2E-13 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RA13_01570 6935e9465a1123b678fd3be3ec9ab37c 109 Gene3D G3DSA:3.30.70.120 1 103 1.9E-44 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_01570 6935e9465a1123b678fd3be3ec9ab37c 109 SUPERFAMILY SSF54913 1 107 2.38E-12 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RA13_01570 6935e9465a1123b678fd3be3ec9ab37c 109 Pfam PF06153 Cyclic-di-AMP receptor 1 109 1.6E-54 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor RA13_04840 3caf4e2430b2cd2cf60aa35be0e84547 143 Pfam PF02623 FliW protein 19 138 3.0E-40 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 RA13_04840 3caf4e2430b2cd2cf60aa35be0e84547 143 Gene3D G3DSA:2.30.290.10 1 142 2.8E-53 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily RA13_04840 3caf4e2430b2cd2cf60aa35be0e84547 143 SUPERFAMILY SSF141457 1 140 3.53E-50 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily RA13_04840 3caf4e2430b2cd2cf60aa35be0e84547 143 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 141 26.366 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 RA13_18800 19c6b251025aaa3863b653dcd87a1189 279 Pfam PF03180 NLPA lipoprotein 29 264 3.7E-74 T 13-10-2018 IPR004872 Lipoprotein NlpA family RA13_18800 19c6b251025aaa3863b653dcd87a1189 279 SUPERFAMILY SSF53850 28 272 1.68E-65 T 13-10-2018 RA13_18800 19c6b251025aaa3863b653dcd87a1189 279 Gene3D G3DSA:3.40.190.10 30 255 2.2E-73 T 13-10-2018 RA13_18800 19c6b251025aaa3863b653dcd87a1189 279 Gene3D G3DSA:3.40.190.10 106 216 2.2E-73 T 13-10-2018 RA13_10210 83f90ae6d64267063eaf059f072e55a0 576 PIRSF PIRSF003128 1 572 2.9E-194 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RA13_10210 83f90ae6d64267063eaf059f072e55a0 576 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 568 1.8E-220 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RA13_10210 83f90ae6d64267063eaf059f072e55a0 576 Gene3D G3DSA:3.40.50.300 250 568 2.0E-54 T 13-10-2018 RA13_10210 83f90ae6d64267063eaf059f072e55a0 576 SUPERFAMILY SSF52540 2 530 7.65E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10210 83f90ae6d64267063eaf059f072e55a0 576 Gene3D G3DSA:3.40.50.300 1 219 2.9E-43 T 13-10-2018 RA13_10210 83f90ae6d64267063eaf059f072e55a0 576 Pfam PF13476 AAA domain 4 237 1.8E-17 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain RA13_19285 9fb37250a8b927e06634e3006266be1d 284 Pfam PF12698 ABC-2 family transporter protein 9 280 2.7E-28 T 13-10-2018 RA13_12740 26437fa9875c087fb06830494e0ca660 48 Hamap MF_00666 Small, acid-soluble spore protein P [sspP]. 1 48 19.24 T 13-10-2018 IPR012614 Small acid-soluble spore protein, SspP GO:0030435 RA13_12740 26437fa9875c087fb06830494e0ca660 48 Pfam PF08179 Small acid-soluble spore protein P family 2 43 4.9E-23 T 13-10-2018 IPR012614 Small acid-soluble spore protein, SspP GO:0030435 RA13_11390 eec5a129c67b8dd57f9fe071dd1c33e8 324 SUPERFAMILY SSF53613 1 311 3.59E-82 T 13-10-2018 IPR029056 Ribokinase-like RA13_11390 eec5a129c67b8dd57f9fe071dd1c33e8 324 Pfam PF00294 pfkB family carbohydrate kinase 4 303 5.9E-70 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RA13_11390 eec5a129c67b8dd57f9fe071dd1c33e8 324 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 255 268 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RA13_11390 eec5a129c67b8dd57f9fe071dd1c33e8 324 Gene3D G3DSA:3.40.1190.20 3 315 3.1E-88 T 13-10-2018 IPR029056 Ribokinase-like RA13_20095 c09a394dbafbc6f8b75fab01378628f4 104 PIRSF PIRSF012508 1 100 5.2E-48 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD RA13_20095 c09a394dbafbc6f8b75fab01378628f4 104 Pfam PF01371 Trp repressor protein 10 94 1.1E-34 T 13-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 RA13_20095 c09a394dbafbc6f8b75fab01378628f4 104 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 7 93 6.2E-50 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD RA13_20095 c09a394dbafbc6f8b75fab01378628f4 104 SUPERFAMILY SSF48295 3 94 1.2E-32 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RA13_20095 c09a394dbafbc6f8b75fab01378628f4 104 Gene3D G3DSA:1.10.1270.10 2 103 1.2E-39 T 13-10-2018 IPR038116 TrpR-like superfamily RA13_14600 92b2b4662b443866fe3e39f4f299b484 420 Pfam PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal 4 180 2.6E-11 T 13-10-2018 IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal GO:0004421|GO:0008299 Reactome: R-HSA-1989781 RA13_14600 92b2b4662b443866fe3e39f4f299b484 420 Gene3D G3DSA:3.40.47.10 189 340 1.4E-175 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14600 92b2b4662b443866fe3e39f4f299b484 420 Pfam PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal 265 373 3.1E-11 T 13-10-2018 IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal domain GO:0004421|GO:0008299 KEGG: 00072+2.3.3.10|KEGG: 00280+2.3.3.10|KEGG: 00650+2.3.3.10|KEGG: 00900+2.3.3.10|MetaCyc: PWY-6174|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7571|MetaCyc: PWY-922|Reactome: R-HSA-1989781 RA13_14600 92b2b4662b443866fe3e39f4f299b484 420 Gene3D G3DSA:3.40.47.10 5 418 1.4E-175 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14600 92b2b4662b443866fe3e39f4f299b484 420 SUPERFAMILY SSF53901 186 419 7.4E-60 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_14600 92b2b4662b443866fe3e39f4f299b484 420 SUPERFAMILY SSF53901 4 181 5.76E-33 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_16875 9ca0d56073d0d26c58331147ddcd0abb 92 Pfam PF10779 Haemolysin XhlA 14 78 6.2E-19 T 13-10-2018 IPR019715 Haemolysin XhlA RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 Hamap MF_00367 GTPase Era [era]. 6 296 38.875 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 Pfam PF01926 50S ribosome-binding GTPase 11 125 1.6E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 SUPERFAMILY SSF52540 11 206 1.3E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 Gene3D G3DSA:3.30.300.20 186 300 2.9E-44 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 279 4.5E-118 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 102 4.6E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 4.6E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 169 2.0E-27 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 SUPERFAMILY SSF54814 182 297 8.83E-44 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 Pfam PF07650 KH domain 208 285 4.1E-22 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_09680 517c76d8675e41b61b23c4a9f7221ef2 301 Gene3D G3DSA:3.40.50.300 3 185 7.3E-47 T 13-10-2018 RA13_11910 d7329ac66197fc32233360f84e78d855 66 SUPERFAMILY SSF47413 3 43 3.66E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_11910 d7329ac66197fc32233360f84e78d855 66 Pfam PF01381 Helix-turn-helix 10 42 2.8E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_11910 d7329ac66197fc32233360f84e78d855 66 Gene3D G3DSA:1.10.260.40 1 61 1.6E-5 T 13-10-2018 RA13_16750 1667b29f219b0976a4c2825525190477 172 Pfam PF03061 Thioesterase superfamily 28 100 4.1E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RA13_16750 1667b29f219b0976a4c2825525190477 172 Gene3D G3DSA:3.10.129.10 1 167 9.1E-57 T 13-10-2018 RA13_16750 1667b29f219b0976a4c2825525190477 172 SUPERFAMILY SSF54637 5 154 2.87E-46 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_12545 c6b2e09432a9b8fa33335d57e9dd62bc 181 Gene3D G3DSA:3.10.450.420 23 181 1.4E-58 T 13-10-2018 RA13_12545 c6b2e09432a9b8fa33335d57e9dd62bc 181 Pfam PF16800 IseA DL-endopeptidase inhibitor 27 179 2.5E-54 T 13-10-2018 IPR031841 DL-endopeptidase inhibitor IseA RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 Pfam PF14804 Jag N-terminus 8 55 1.0E-19 T 13-10-2018 IPR032782 Jag, N-terminal RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 Pfam PF01424 R3H domain 145 204 5.3E-15 T 13-10-2018 IPR001374 R3H domain GO:0003676 RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 Gene3D G3DSA:3.30.300.20 59 140 8.8E-22 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 SMART SM00393 126 206 3.0E-21 T 13-10-2018 IPR001374 R3H domain GO:0003676 RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 SUPERFAMILY SSF54814 79 120 2.75E-5 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 Gene3D G3DSA:3.30.30.80 1 57 2.1E-19 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 SUPERFAMILY SSF82708 147 206 1.84E-7 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 Pfam PF13083 KH domain 67 132 7.1E-13 T 13-10-2018 RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 Gene3D G3DSA:3.30.1370.50 141 207 3.1E-24 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 RA13_01825 4726d2a3cb67a64f18f59f93a09a436d 207 SMART SM01245 5 57 6.1E-23 T 13-10-2018 IPR032782 Jag, N-terminal RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 58 3.9E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Gene3D G3DSA:3.40.1390.20 70 178 5.4E-26 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 SUPERFAMILY SSF54631 182 307 4.93E-30 T 13-10-2018 RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Gene3D G3DSA:3.10.580.10 186 314 2.0E-24 T 13-10-2018 RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Gene3D G3DSA:3.10.129.10 324 435 4.9E-10 T 13-10-2018 RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Pfam PF07085 DRTGG domain 76 178 1.5E-28 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Pfam PF03061 Thioesterase superfamily 353 427 6.5E-10 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Pfam PF00571 CBS domain 253 307 2.3E-8 T 13-10-2018 IPR000644 CBS domain RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Pfam PF00571 CBS domain 191 244 5.7E-7 T 13-10-2018 IPR000644 CBS domain RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 SMART SM00116 200 248 1.2 T 13-10-2018 IPR000644 CBS domain RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 SMART SM00116 259 307 7.7E-9 T 13-10-2018 IPR000644 CBS domain RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 Gene3D G3DSA:1.10.10.10 6 69 3.7E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 SUPERFAMILY SSF54637 338 433 6.54E-18 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 SUPERFAMILY SSF46785 5 54 3.81E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_08050 3a0e8017c950b483d3f80a8647297d62 439 SUPERFAMILY SSF75138 72 185 5.36E-29 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RA13_06705 d56037a164e20e1c7c78ef52a7f3a432 348 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 329 3.2E-45 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RA13_12930 ca7a378c6c4323f4b8863dabf29b7441 371 Pfam PF13424 Tetratricopeptide repeat 181 244 3.6E-10 T 13-10-2018 RA13_12930 ca7a378c6c4323f4b8863dabf29b7441 371 SUPERFAMILY SSF48452 110 351 1.01E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_12930 ca7a378c6c4323f4b8863dabf29b7441 371 Gene3D G3DSA:1.25.40.10 1 370 3.4E-86 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_17535 79c2ba9cddb0b2f8eceb7b2d18e8e330 670 SUPERFAMILY SSF55486 122 664 2.61E-142 T 13-10-2018 RA13_17535 79c2ba9cddb0b2f8eceb7b2d18e8e330 670 Pfam PF01432 Peptidase family M3 272 651 2.5E-86 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RA13_17535 79c2ba9cddb0b2f8eceb7b2d18e8e330 670 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 74 663 7.2E-233 T 13-10-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 RA13_17535 79c2ba9cddb0b2f8eceb7b2d18e8e330 670 Gene3D G3DSA:1.20.140.70 91 246 8.4E-55 T 13-10-2018 RA13_17535 79c2ba9cddb0b2f8eceb7b2d18e8e330 670 Gene3D G3DSA:1.10.287.830 248 294 7.8E-22 T 13-10-2018 RA13_17535 79c2ba9cddb0b2f8eceb7b2d18e8e330 670 Gene3D G3DSA:1.10.1370.20 295 670 8.6E-146 T 13-10-2018 RA13_17535 79c2ba9cddb0b2f8eceb7b2d18e8e330 670 Pfam PF08439 Oligopeptidase F 181 250 3.0E-23 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain RA13_02425 16258df5e6149bf9d70d1155efe93877 448 Pfam PF02447 GntP family permease 1 446 2.6E-179 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RA13_02425 16258df5e6149bf9d70d1155efe93877 448 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 448 2.8E-203 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RA13_02425 16258df5e6149bf9d70d1155efe93877 448 PIRSF PIRSF002746 1 448 2.3E-176 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 40 55 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 6 427 36.358 T 13-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 Gene3D G3DSA:1.10.3860.10 4 423 1.9E-129 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 Pfam PF00375 Sodium:dicarboxylate symporter family 13 403 6.9E-118 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 298 321 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 2.3E-35 T 13-10-2018 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 PRINTS PR00173 Glutamate-aspartate symporter signature 78 103 2.3E-35 T 13-10-2018 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 2.3E-35 T 13-10-2018 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 2.3E-35 T 13-10-2018 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 PRINTS PR00173 Glutamate-aspartate symporter signature 330 349 2.3E-35 T 13-10-2018 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 PRINTS PR00173 Glutamate-aspartate symporter signature 48 68 2.3E-35 T 13-10-2018 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 2.3E-35 T 13-10-2018 RA13_21130 246e83d5fd7ba61ebca55ca7f5572cd3 427 SUPERFAMILY SSF118215 13 405 5.75E-123 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_08255 b2defa80e362abf79d28ea22b07299e5 157 SUPERFAMILY SSF53474 2 156 7.01E-17 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_08255 b2defa80e362abf79d28ea22b07299e5 157 Gene3D G3DSA:3.40.50.1820 77 157 3.8E-8 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_08255 b2defa80e362abf79d28ea22b07299e5 157 Gene3D G3DSA:3.40.50.1820 1 76 7.2E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_08545 86ea33ab0bf294b8b1b91b33246f0ac5 171 SUPERFAMILY SSF56300 1 160 7.77E-42 T 13-10-2018 RA13_08545 86ea33ab0bf294b8b1b91b33246f0ac5 171 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 145 3.5E-30 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 RA13_08545 86ea33ab0bf294b8b1b91b33246f0ac5 171 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 149 7.5E-40 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 RA13_08545 86ea33ab0bf294b8b1b91b33246f0ac5 171 Gene3D G3DSA:3.60.21.10 1 169 1.3E-46 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_08010 e6665715f2dc60b9204e39162b167ab3 328 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 121 135 3.8E-7 T 13-10-2018 RA13_08010 e6665715f2dc60b9204e39162b167ab3 328 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 217 241 3.8E-7 T 13-10-2018 RA13_08010 e6665715f2dc60b9204e39162b167ab3 328 PIRSF PIRSF026567 1 328 4.3E-141 T 13-10-2018 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted RA13_08010 e6665715f2dc60b9204e39162b167ab3 328 Pfam PF02384 N-6 DNA Methylase 97 303 9.0E-16 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RA13_08010 e6665715f2dc60b9204e39162b167ab3 328 Gene3D G3DSA:1.10.150.470 1 85 3.6E-21 T 13-10-2018 RA13_08010 e6665715f2dc60b9204e39162b167ab3 328 Gene3D G3DSA:3.40.50.150 88 328 5.8E-56 T 13-10-2018 RA13_08010 e6665715f2dc60b9204e39162b167ab3 328 SUPERFAMILY SSF53335 42 308 3.0E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_06315 4227ebd965c222415010471870d3fbff 266 TIGRFAM TIGR02832 spo_yunB: sporulation protein YunB 14 236 1.5E-69 T 13-10-2018 IPR014197 Sporulation protein YunB RA13_06315 4227ebd965c222415010471870d3fbff 266 Pfam PF09560 Sporulation protein YunB (Spo_YunB) 143 232 3.0E-30 T 13-10-2018 IPR014197 Sporulation protein YunB RA13_06315 4227ebd965c222415010471870d3fbff 266 PIRSF PIRSF021383 1 249 4.2E-108 T 13-10-2018 IPR014197 Sporulation protein YunB RA13_21000 e953fe06b2a33e4672426d6b6ece6e9c 109 SUPERFAMILY SSF52091 3 101 4.71E-24 T 13-10-2018 IPR036513 STAS domain superfamily RA13_21000 e953fe06b2a33e4672426d6b6ece6e9c 109 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 105 2.8E-33 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RA13_21000 e953fe06b2a33e4672426d6b6ece6e9c 109 Gene3D G3DSA:3.30.750.24 1 109 1.3E-24 T 13-10-2018 IPR036513 STAS domain superfamily RA13_21000 e953fe06b2a33e4672426d6b6ece6e9c 109 Pfam PF01740 STAS domain 5 99 1.5E-17 T 13-10-2018 IPR002645 STAS domain RA13_15095 a255e1459a1ba4d2d9f4d1b94c15615e 129 PIRSF PIRSF002889 2 128 1.3E-32 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RA13_15095 a255e1459a1ba4d2d9f4d1b94c15615e 129 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 14 34 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site RA13_15095 a255e1459a1ba4d2d9f4d1b94c15615e 129 Pfam PF00460 Flagella basal body rod protein 8 38 9.2E-9 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 RA13_15095 a255e1459a1ba4d2d9f4d1b94c15615e 129 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 4 125 5.4E-38 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 RA13_13775 c47555d1ed827aff287df0b4beb1a226 576 Gene3D G3DSA:3.10.310.30 316 445 2.9E-10 T 13-10-2018 RA13_13775 c47555d1ed827aff287df0b4beb1a226 576 Pfam PF01368 DHH family 66 196 3.3E-8 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_13775 c47555d1ed827aff287df0b4beb1a226 576 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 14 563 1.4E-139 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RA13_13775 c47555d1ed827aff287df0b4beb1a226 576 SUPERFAMILY SSF64182 41 446 1.57E-55 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily RA13_13775 c47555d1ed827aff287df0b4beb1a226 576 Gene3D G3DSA:3.90.1640.30 38 288 5.3E-52 T 13-10-2018 RA13_10425 a3b368f90ae9372202e797c75c1aaa83 338 SUPERFAMILY SSF51395 4 335 1.47E-114 T 13-10-2018 RA13_10425 a3b368f90ae9372202e797c75c1aaa83 338 Hamap MF_01614 NADPH dehydrogenase [namA]. 2 338 68.345 T 13-10-2018 IPR023663 NADPH dehydrogenase GO:0003959|GO:0055114 RA13_10425 a3b368f90ae9372202e797c75c1aaa83 338 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 327 1.0E-106 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RA13_10425 a3b368f90ae9372202e797c75c1aaa83 338 Gene3D G3DSA:3.20.20.70 2 338 4.8E-130 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_01960 9c339d281d9316309b7212b4ff9fc370 114 Pfam PF06114 IrrE N-terminal-like domain 14 92 5.6E-14 T 13-10-2018 IPR010359 IrrE N-terminal-like domain RA13_06095 207ae1bf859172d2cf00b8f2f4756e36 437 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 152 428 5.1E-74 T 13-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 RA13_06095 207ae1bf859172d2cf00b8f2f4756e36 437 SUPERFAMILY SSF101960 12 436 6.93E-119 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily RA13_06095 207ae1bf859172d2cf00b8f2f4756e36 437 Pfam PF01458 Uncharacterized protein family (UPF0051) 186 411 2.9E-62 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RA13_19240 ae56fba7eebf87f6016941402b4ea4b9 325 Gene3D G3DSA:3.40.50.1980 33 142 4.0E-36 T 13-10-2018 RA13_19240 ae56fba7eebf87f6016941402b4ea4b9 325 Pfam PF01497 Periplasmic binding protein 57 297 9.8E-32 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain RA13_19240 ae56fba7eebf87f6016941402b4ea4b9 325 Gene3D G3DSA:3.40.50.1980 144 325 1.4E-59 T 13-10-2018 RA13_19240 ae56fba7eebf87f6016941402b4ea4b9 325 SUPERFAMILY SSF53807 38 317 3.92E-69 T 13-10-2018 RA13_00905 24ca1f83c0eeb203a9b2c5cb1ca68416 120 Gene3D G3DSA:3.90.1030.10 1 120 1.2E-50 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00905 24ca1f83c0eeb203a9b2c5cb1ca68416 120 TIGRFAM TIGR00059 L17: ribosomal protein bL17 2 120 4.3E-50 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00905 24ca1f83c0eeb203a9b2c5cb1ca68416 120 Pfam PF01196 Ribosomal protein L17 16 120 8.9E-40 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00905 24ca1f83c0eeb203a9b2c5cb1ca68416 120 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 1 120 29.028 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00905 24ca1f83c0eeb203a9b2c5cb1ca68416 120 ProSitePatterns PS01167 Ribosomal protein L17 signature. 30 52 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00905 24ca1f83c0eeb203a9b2c5cb1ca68416 120 SUPERFAMILY SSF64263 2 120 1.7E-45 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_20685 e22b6f4aa7a9a29190df5368102b76e0 66 Pfam PF11755 Protein of unknown function (DUF3311) 8 64 1.8E-18 T 13-10-2018 IPR021741 Protein of unknown function DUF3311 RA13_12735 dea4fd42e6db7b162055552f51f74650 48 Hamap MF_00665 Small, acid-soluble spore protein O [sspO]. 1 48 20.261 T 13-10-2018 IPR012613 Small acid-soluble spore protein, SspO GO:0030436|GO:0042601 RA13_12735 dea4fd42e6db7b162055552f51f74650 48 TIGRFAM TIGR02864 spore_sspO: small, acid-soluble spore protein O 1 48 3.2E-27 T 13-10-2018 IPR012613 Small acid-soluble spore protein, SspO GO:0030436|GO:0042601 RA13_12735 dea4fd42e6db7b162055552f51f74650 48 ProDom PD050103 O SPORE SMALL ACID-SOLUBLE SASP SPORULATION CAPSID COAT K SEQUENCING 3 48 7.0E-19 T 13-10-2018 IPR012613 Small acid-soluble spore protein, SspO GO:0030436|GO:0042601 RA13_12735 dea4fd42e6db7b162055552f51f74650 48 Pfam PF08175 Small acid-soluble spore protein O family 2 48 1.5E-25 T 13-10-2018 RA13_05405 b35d519020521bc3755bc7e180af7da7 240 Hamap MF_02104 Lactate utilization protein C [lutC]. 5 237 48.669 T 13-10-2018 IPR022823 Lactate utilization protein C RA13_05405 b35d519020521bc3755bc7e180af7da7 240 Gene3D G3DSA:3.40.50.10420 46 237 1.7E-36 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RA13_05405 b35d519020521bc3755bc7e180af7da7 240 SUPERFAMILY SSF100950 47 237 5.44E-41 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_05405 b35d519020521bc3755bc7e180af7da7 240 Pfam PF02589 LUD domain 91 237 4.3E-30 T 13-10-2018 IPR003741 LUD domain RA13_12370 39f69a2b46532251f9e5ae13480ff9e5 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_12370 39f69a2b46532251f9e5ae13480ff9e5 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_12370 39f69a2b46532251f9e5ae13480ff9e5 198 Gene3D G3DSA:1.10.357.10 13 193 6.4E-36 T 13-10-2018 RA13_12370 39f69a2b46532251f9e5ae13480ff9e5 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 63 6.6E-19 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_12370 39f69a2b46532251f9e5ae13480ff9e5 198 SUPERFAMILY SSF46689 11 80 2.46E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_15445 cc4b9709b686014012c56bb2ef79de06 181 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 4 179 39.096 T 13-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RA13_15445 cc4b9709b686014012c56bb2ef79de06 181 SUPERFAMILY SSF53271 5 171 7.34E-44 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_15445 cc4b9709b686014012c56bb2ef79de06 181 Gene3D G3DSA:3.40.50.2020 1 181 3.9E-62 T 13-10-2018 RA13_15445 cc4b9709b686014012c56bb2ef79de06 181 Pfam PF00156 Phosphoribosyl transferase domain 7 151 5.7E-23 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RA13_21015 19ab86d55a42e3937b2429ca12629cbf 121 Pfam PF01740 STAS domain 12 101 7.8E-13 T 13-10-2018 IPR002645 STAS domain RA13_21015 19ab86d55a42e3937b2429ca12629cbf 121 SUPERFAMILY SSF52091 5 115 5.89E-20 T 13-10-2018 IPR036513 STAS domain superfamily RA13_21015 19ab86d55a42e3937b2429ca12629cbf 121 Gene3D G3DSA:3.30.750.24 3 119 1.5E-33 T 13-10-2018 IPR036513 STAS domain superfamily RA13_09910 991806824e9c897d3b5989b4783716ab 351 SUPERFAMILY SSF82171 53 331 4.32E-11 T 13-10-2018 RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 ProDom PD041835 PROTEASE GERMINATION HYDROLASE SPORE GPR ENDOPEPTIDASE PROTEINASE ZYMOGEN PRECURSOR PEPTIDASE 10 367 0.0 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 TIGRFAM TIGR01441 GPR: GPR endopeptidase 12 367 1.1E-197 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 Gene3D G3DSA:3.40.50.1450 287 367 4.4E-18 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 Gene3D G3DSA:3.40.50.1450 2 286 7.6E-112 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 Pfam PF03418 Germination protease 18 366 2.3E-190 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 SUPERFAMILY SSF53163 5 366 1.2E-130 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 Hamap MF_00626 Germination protease [gpr]. 1 367 163.302 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 RA13_09535 7c9bb1cc135140f95e110b0797761a7e 367 PIRSF PIRSF019549 4 367 5.4E-188 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 RA13_08060 5bb0af6f71cdcbc02d4aade819587832 313 Pfam PF02272 DHHA1 domain 182 308 3.5E-16 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RA13_08060 5bb0af6f71cdcbc02d4aade819587832 313 Pfam PF01368 DHH family 15 153 1.4E-12 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RA13_08060 5bb0af6f71cdcbc02d4aade819587832 313 Gene3D G3DSA:3.90.1640.10 1 197 2.7E-58 T 13-10-2018 RA13_08060 5bb0af6f71cdcbc02d4aade819587832 313 SUPERFAMILY SSF64182 12 301 1.57E-72 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily RA13_08060 5bb0af6f71cdcbc02d4aade819587832 313 Gene3D G3DSA:3.10.310.30 199 313 3.3E-35 T 13-10-2018 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 SUPERFAMILY SSF56104 2 237 1.93E-83 T 13-10-2018 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 ProSitePatterns PS01057 SAICAR synthetase signature 1. 88 102 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 5 236 4.6E-85 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 ProSitePatterns PS01058 SAICAR synthetase signature 2. 175 183 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 6 237 33.79 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 Pfam PF01259 SAICAR synthetase 9 233 7.3E-69 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 Gene3D G3DSA:3.30.200.20 9 234 1.8E-97 T 13-10-2018 RA13_20165 373c1358ffe56a324571d916c3f6347a 238 Gene3D G3DSA:3.30.470.20 87 223 1.8E-97 T 13-10-2018 RA13_05650 1c16ccd86735e68d199065490a6a50b4 358 SUPERFAMILY SSF51735 12 210 4.39E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05650 1c16ccd86735e68d199065490a6a50b4 358 Gene3D G3DSA:3.30.360.10 132 349 9.1E-141 T 13-10-2018 RA13_05650 1c16ccd86735e68d199065490a6a50b4 358 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 144 250 2.0E-19 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RA13_05650 1c16ccd86735e68d199065490a6a50b4 358 Gene3D G3DSA:3.40.50.720 16 326 9.1E-141 T 13-10-2018 RA13_05650 1c16ccd86735e68d199065490a6a50b4 358 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 15 131 1.0E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RA13_06670 937791e05498d7bf62134d5d5e0800ac 493 TIGRFAM TIGR00944 2a6301s04: multicomponent K+:H+antiporter 3 463 7.2E-215 T 13-10-2018 IPR004775 Na(+)/H(+) antiporter subunit D1 GO:0006812|GO:0015386|GO:0016021 RA13_06670 937791e05498d7bf62134d5d5e0800ac 493 Pfam PF00361 Proton-conducting membrane transporter 127 414 2.5E-49 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_06670 937791e05498d7bf62134d5d5e0800ac 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 234 258 3.3E-15 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_06670 937791e05498d7bf62134d5d5e0800ac 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 322 341 3.3E-15 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_06670 937791e05498d7bf62134d5d5e0800ac 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 132 151 3.3E-15 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_06670 937791e05498d7bf62134d5d5e0800ac 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 162 186 3.3E-15 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_06670 937791e05498d7bf62134d5d5e0800ac 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 374 400 3.3E-15 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 Pfam PF01327 Polypeptide deformylase 4 171 4.7E-48 T 13-10-2018 IPR023635 Peptide deformylase RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 SUPERFAMILY SSF56420 2 181 2.62E-58 T 13-10-2018 IPR036821 Peptide deformylase superfamily RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 PIRSF PIRSF004749 2 184 4.9E-48 T 13-10-2018 IPR023635 Peptide deformylase RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 Gene3D G3DSA:3.90.45.10 1 184 9.8E-68 T 13-10-2018 IPR036821 Peptide deformylase superfamily RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 PRINTS PR01576 Peptide deformylase signature 47 76 7.7E-31 T 13-10-2018 IPR023635 Peptide deformylase RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 PRINTS PR01576 Peptide deformylase signature 121 139 7.7E-31 T 13-10-2018 IPR023635 Peptide deformylase RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 PRINTS PR01576 Peptide deformylase signature 108 119 7.7E-31 T 13-10-2018 IPR023635 Peptide deformylase RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 PRINTS PR01576 Peptide deformylase signature 140 169 7.7E-31 T 13-10-2018 IPR023635 Peptide deformylase RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 178 6.1E-56 T 13-10-2018 IPR023635 Peptide deformylase RA13_15915 3a0384d90d3e8ebba28598c1c79d1ae9 184 Hamap MF_00163 Peptide deformylase [def]. 3 182 27.309 T 13-10-2018 IPR023635 Peptide deformylase RA13_17785 34281542722ac278306443875fffc1e9 282 Gene3D G3DSA:2.40.50.140 71 148 6.1E-25 T 13-10-2018 RA13_17785 34281542722ac278306443875fffc1e9 282 SUPERFAMILY SSF50249 138 210 7.55E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_17785 34281542722ac278306443875fffc1e9 282 Pfam PF13509 S1 domain 4 62 3.0E-21 T 13-10-2018 IPR039566 Conserved virulence factor B, S1 domain RA13_17785 34281542722ac278306443875fffc1e9 282 Gene3D G3DSA:1.10.10.10 220 279 6.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_17785 34281542722ac278306443875fffc1e9 282 Gene3D G3DSA:2.40.50.140 151 218 2.0E-18 T 13-10-2018 RA13_17785 34281542722ac278306443875fffc1e9 282 SMART SM00316 2 62 0.9 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_17785 34281542722ac278306443875fffc1e9 282 SMART SM00316 149 211 0.0014 T 13-10-2018 IPR022967 RNA-binding domain, S1 RA13_17785 34281542722ac278306443875fffc1e9 282 PIRSF PIRSF012524 1 282 2.7E-118 T 13-10-2018 IPR014464 Conserved virulence factor B RA13_14805 703323aceab90ad878d55bb3f6a1d140 297 TIGRFAM TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit 5 290 4.5E-139 T 13-10-2018 IPR014215 Dipicolinic acid synthetase subunit A RA13_14805 703323aceab90ad878d55bb3f6a1d140 297 Gene3D G3DSA:3.40.50.720 126 272 6.0E-111 T 13-10-2018 RA13_14805 703323aceab90ad878d55bb3f6a1d140 297 SUPERFAMILY SSF51735 133 269 5.14E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_14805 703323aceab90ad878d55bb3f6a1d140 297 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 152 292 6.1E-11 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RA13_14805 703323aceab90ad878d55bb3f6a1d140 297 Gene3D G3DSA:3.40.50.720 7 288 6.0E-111 T 13-10-2018 RA13_14805 703323aceab90ad878d55bb3f6a1d140 297 Pfam PF16924 Dipicolinate synthase subunit A N-terminal domain 6 123 4.4E-32 T 13-10-2018 IPR031629 Dipicolinate synthase subunit A, N-terminal RA13_05600 b612992dd42d8d2091295446f1fea2e2 106 SUPERFAMILY SSF46785 2 103 2.28E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05600 b612992dd42d8d2091295446f1fea2e2 106 Pfam PF01638 HxlR-like helix-turn-helix 16 104 7.1E-34 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RA13_05600 b612992dd42d8d2091295446f1fea2e2 106 Gene3D G3DSA:1.10.10.10 2 105 2.3E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08835 6a5c1cae1bc0c826fce65a587030d988 110 SUPERFAMILY SSF46973 5 102 1.16E-36 T 13-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 RA13_08835 6a5c1cae1bc0c826fce65a587030d988 110 PIRSF PIRSF000699 1 109 3.4E-39 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 RA13_08835 6a5c1cae1bc0c826fce65a587030d988 110 Gene3D G3DSA:1.20.58.280 2 107 1.9E-40 T 13-10-2018 RA13_08835 6a5c1cae1bc0c826fce65a587030d988 110 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 9 102 1.7E-37 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 RA13_10060 b84c712c72ea48f2f01e10184674b111 126 Gene3D G3DSA:3.40.250.10 30 126 9.8E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RA13_10060 b84c712c72ea48f2f01e10184674b111 126 Pfam PF00581 Rhodanese-like domain 41 119 3.5E-20 T 13-10-2018 IPR001763 Rhodanese-like domain RA13_10060 b84c712c72ea48f2f01e10184674b111 126 SMART SM00450 29 124 9.4E-33 T 13-10-2018 IPR001763 Rhodanese-like domain RA13_10060 b84c712c72ea48f2f01e10184674b111 126 SUPERFAMILY SSF52821 8 119 3.4E-35 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 SUPERFAMILY SSF63380 1 89 1.96E-27 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 Gene3D G3DSA:2.40.30.20 1 88 1.9E-32 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 Gene3D G3DSA:2.40.30.20 101 204 2.1E-32 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 Pfam PF00677 Lumazine binding domain 3 86 2.0E-25 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 Pfam PF00677 Lumazine binding domain 99 183 1.5E-21 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 9.5E-88 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 PIRSF PIRSF000498 1 210 2.5E-79 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10780 3757c6adbaa8395f7ac1b0ef9a408ef4 215 SUPERFAMILY SSF63380 92 195 3.66E-31 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RA13_06355 b00c8d76db3205579347f630df6b7203 338 SUPERFAMILY SSF56112 6 311 2.04E-20 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_06355 b00c8d76db3205579347f630df6b7203 338 TIGRFAM TIGR02905 spore_yutH: spore coat protein YutH 5 311 7.2E-121 T 13-10-2018 IPR014254 Spore coat protein YutH RA13_06355 b00c8d76db3205579347f630df6b7203 338 Gene3D G3DSA:3.90.1200.10 97 311 1.6E-24 T 13-10-2018 RA13_09100 26fc40554963bee17f3193222de27a73 88 PIRSF PIRSF037258 1 88 3.7E-46 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 RA13_09100 26fc40554963bee17f3193222de27a73 88 Hamap MF_01507 UPF0297 protein . 1 85 28.679 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 RA13_09100 26fc40554963bee17f3193222de27a73 88 Pfam PF06135 Bacterial protein of unknown function (DUF965) 5 83 4.0E-38 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 RA13_03670 84c4d8197a6a8aee837ed2243cedd087 433 SUPERFAMILY SSF109604 6 412 1.15E-122 T 13-10-2018 RA13_03670 84c4d8197a6a8aee837ed2243cedd087 433 Gene3D G3DSA:1.20.1250.30 235 412 8.8E-170 T 13-10-2018 RA13_03670 84c4d8197a6a8aee837ed2243cedd087 433 Gene3D G3DSA:1.10.3210.10 11 401 8.8E-170 T 13-10-2018 RA13_03670 84c4d8197a6a8aee837ed2243cedd087 433 Pfam PF01966 HD domain 61 181 2.3E-17 T 13-10-2018 IPR006674 HD domain RA13_03670 84c4d8197a6a8aee837ed2243cedd087 433 SMART SM00471 57 187 3.1E-13 T 13-10-2018 IPR003607 HD/PDEase domain RA13_09185 cd6fd3ca42d52281a7b2068f0c4b05b8 159 Pfam PF07849 Protein of unknown function (DUF1641) 118 155 2.7E-16 T 13-10-2018 IPR012440 Protein of unknown function DUF1641 RA13_01640 df6f0994a93d1a81922045c95c538aae 107 Pfam PF02575 YbaB/EbfC DNA-binding family 12 102 9.5E-36 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RA13_01640 df6f0994a93d1a81922045c95c538aae 107 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 106 1.2E-35 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RA13_01640 df6f0994a93d1a81922045c95c538aae 107 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 6 100 23.631 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RA13_01640 df6f0994a93d1a81922045c95c538aae 107 Gene3D G3DSA:3.30.1310.10 2 107 2.1E-40 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RA13_01640 df6f0994a93d1a81922045c95c538aae 107 SUPERFAMILY SSF82607 12 106 1.11E-34 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RA13_01640 df6f0994a93d1a81922045c95c538aae 107 PIRSF PIRSF004555 4 107 3.7E-41 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RA13_04690 188d51e62b65ac2d7c724e8090cb6885 293 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 264 1.7E-122 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 RA13_04690 188d51e62b65ac2d7c724e8090cb6885 293 Gene3D G3DSA:3.90.550.10 1 291 8.2E-94 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04690 188d51e62b65ac2d7c724e8090cb6885 293 SUPERFAMILY SSF53448 4 274 2.5E-69 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_04690 188d51e62b65ac2d7c724e8090cb6885 293 Pfam PF00483 Nucleotidyl transferase 6 264 4.7E-34 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RA13_20535 1f7064ac5d4eecb43011812fedc230b0 151 Pfam PF01047 MarR family 40 97 1.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_20535 1f7064ac5d4eecb43011812fedc230b0 151 Gene3D G3DSA:1.10.10.10 2 151 2.3E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20535 1f7064ac5d4eecb43011812fedc230b0 151 SUPERFAMILY SSF46785 30 149 5.17E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20535 1f7064ac5d4eecb43011812fedc230b0 151 SMART SM00347 33 137 6.9E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 PRINTS PR01183 Ribonucleotide reductase large chain signature 420 443 3.8E-28 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 PRINTS PR01183 Ribonucleotide reductase large chain signature 569 596 3.8E-28 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 PRINTS PR01183 Ribonucleotide reductase large chain signature 376 387 3.8E-28 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 PRINTS PR01183 Ribonucleotide reductase large chain signature 243 262 3.8E-28 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 PRINTS PR01183 Ribonucleotide reductase large chain signature 459 481 3.8E-28 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 PRINTS PR01183 Ribonucleotide reductase large chain signature 487 510 3.8E-28 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 8 700 0.0 T 13-10-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 SUPERFAMILY SSF48168 8 166 7.19E-50 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 558 580 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 SUPERFAMILY SSF51998 167 689 4.27E-166 T 13-10-2018 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 Pfam PF08343 Ribonucleotide reductase N-terminal 9 89 2.9E-29 T 13-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 Gene3D G3DSA:3.20.70.20 152 686 1.3E-184 T 13-10-2018 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 95 688 9.7E-174 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 91 163 6.0E-16 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 Gene3D G3DSA:1.10.1650.20 286 338 1.3E-184 T 13-10-2018 RA13_14480 ebb1aad9857be9a8d21197d8cf8e2ac2 700 Pfam PF02867 Ribonucleotide reductase, barrel domain 168 684 1.1E-136 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_10430 8da459e1a7b1c18156c86b749260e55f 538 PIRSF PIRSF010386 1 538 2.3E-219 T 13-10-2018 IPR012166 Uncharacterised protein family RocB RA13_10430 8da459e1a7b1c18156c86b749260e55f 538 Pfam PF01546 Peptidase family M20/M25/M40 124 438 4.0E-9 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_10430 8da459e1a7b1c18156c86b749260e55f 538 SUPERFAMILY SSF53187 6 516 1.83E-25 T 13-10-2018 RA13_10430 8da459e1a7b1c18156c86b749260e55f 538 Gene3D G3DSA:3.40.630.10 3 231 9.5E-34 T 13-10-2018 RA13_07980 4f17524a292c069c6165b0447eef6dd3 267 Gene3D G3DSA:2.60.200.30 109 245 4.6E-75 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RA13_07980 4f17524a292c069c6165b0447eef6dd3 267 SUPERFAMILY SSF111331 10 266 1.42E-55 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RA13_07980 4f17524a292c069c6165b0447eef6dd3 267 Gene3D G3DSA:3.40.50.10330 34 267 4.6E-75 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RA13_07980 4f17524a292c069c6165b0447eef6dd3 267 Hamap MF_00361 NAD kinase [nadK]. 6 267 20.631 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RA13_07980 4f17524a292c069c6165b0447eef6dd3 267 Pfam PF01513 ATP-NAD kinase 23 252 4.6E-12 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RA13_13345 2361063a7a938b16ba8f1f4c7f6a37c3 152 Gene3D G3DSA:3.40.1580.10 1 152 1.1E-48 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily RA13_13345 2361063a7a938b16ba8f1f4c7f6a37c3 152 Pfam PF14567 SMI1-KNR4 cell-wall 7 137 1.9E-36 T 13-10-2018 RA13_13345 2361063a7a938b16ba8f1f4c7f6a37c3 152 SMART SM00860 22 135 1.5E-9 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RA13_13345 2361063a7a938b16ba8f1f4c7f6a37c3 152 SUPERFAMILY SSF160631 1 150 2.75E-42 T 13-10-2018 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 462 481 3.0E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 487 496 3.0E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 271 281 3.0E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 392 399 3.0E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 554 562 3.0E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 531 547 3.0E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 500 511 3.0E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 Gene3D G3DSA:2.40.30.10 233 445 1.9E-73 T 13-10-2018 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 Pfam PF00175 Oxidoreductase NAD-binding domain 463 569 4.4E-18 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 Gene3D G3DSA:3.40.50.360 59 217 1.6E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00369 Flavodoxin signature 149 159 2.0E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00369 Flavodoxin signature 117 128 2.0E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00369 Flavodoxin signature 69 82 2.0E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PRINTS PR00369 Flavodoxin signature 173 192 2.0E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 Pfam PF00667 FAD binding domain 233 428 7.4E-33 T 13-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 SUPERFAMILY SSF52343 450 605 8.64E-52 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 SUPERFAMILY SSF63380 230 451 3.66E-64 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 SUPERFAMILY SSF52218 66 211 5.45E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 Gene3D G3DSA:1.20.990.10 281 390 1.9E-73 T 13-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 Gene3D G3DSA:3.40.50.80 451 605 1.5E-59 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 6 605 1.3E-271 T 13-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 PIRSF PIRSF000207 1 605 6.7E-270 T 13-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RA13_05700 fd2d566775b85d8c8ef236cf09f65c85 605 Pfam PF00258 Flavodoxin 70 194 1.7E-31 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RA13_14865 6a696937e87c17d1cc903eb32d670366 91 Pfam PF04296 Protein of unknown function (DUF448) 10 82 4.7E-28 T 13-10-2018 IPR007393 Domain of unknown function DUF448 RA13_14865 6a696937e87c17d1cc903eb32d670366 91 Gene3D G3DSA:3.30.1230.10 2 91 6.1E-35 T 13-10-2018 IPR035931 YlxR-like superfamily RA13_14865 6a696937e87c17d1cc903eb32d670366 91 SUPERFAMILY SSF64376 5 88 9.42E-28 T 13-10-2018 IPR035931 YlxR-like superfamily RA13_00705 ed76ea421d8173cbdc799a757fbee741 151 Pfam PF04463 Protein of unknown function (DUF523) 2 145 1.4E-41 T 13-10-2018 IPR007553 Domain of unknown function DUF523 RA13_07935 3703b3bfaf5f25ba7ea8d83c353ac6ea 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 52 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RA13_07935 3703b3bfaf5f25ba7ea8d83c353ac6ea 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 2.5E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_07935 3703b3bfaf5f25ba7ea8d83c353ac6ea 207 SUPERFAMILY SSF46689 4 71 5.13E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_07935 3703b3bfaf5f25ba7ea8d83c353ac6ea 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 3.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_07935 3703b3bfaf5f25ba7ea8d83c353ac6ea 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 3.3E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_07935 3703b3bfaf5f25ba7ea8d83c353ac6ea 207 Gene3D G3DSA:1.10.357.10 2 202 7.9E-35 T 13-10-2018 RA13_14595 2d392213aee7bee3ebb808b390ebd69e 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 258 4.4E-69 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_14595 2d392213aee7bee3ebb808b390ebd69e 258 Gene3D G3DSA:3.90.226.10 2 258 3.9E-77 T 13-10-2018 RA13_14595 2d392213aee7bee3ebb808b390ebd69e 258 SUPERFAMILY SSF52096 4 257 1.63E-41 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_08240 af4d8c534aec9ec81636975444c14548 145 Pfam PF03788 LrgA family 21 112 1.2E-23 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 RA13_08360 8d5755082dc6372ac8b5ac8fbc33f39c 498 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 291 490 2.7E-41 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RA13_08360 8d5755082dc6372ac8b5ac8fbc33f39c 498 SMART SM00813 291 490 2.0E-92 T 13-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 RA13_08360 8d5755082dc6372ac8b5ac8fbc33f39c 498 SUPERFAMILY SSF51011 369 498 7.19E-45 T 13-10-2018 RA13_08360 8d5755082dc6372ac8b5ac8fbc33f39c 498 Gene3D G3DSA:3.20.20.80 18 381 7.7E-231 T 13-10-2018 RA13_08360 8d5755082dc6372ac8b5ac8fbc33f39c 498 SUPERFAMILY SSF51445 17 381 2.77E-116 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_08360 8d5755082dc6372ac8b5ac8fbc33f39c 498 Gene3D G3DSA:2.60.40.1180 8 494 7.7E-231 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RA13_04215 629afe9263f7bda2afb8a83a151e12f3 177 Pfam PF17319 Family of unknown function (DUF5362) 49 150 1.2E-11 T 13-10-2018 IPR035287 Protein of unknown function DUF5362 RA13_04215 629afe9263f7bda2afb8a83a151e12f3 177 ProDom PD031895 YWNG MEMBRANE TRANSMEMBRANE YWNC 46 129 6.0E-33 T 13-10-2018 IPR035287 Protein of unknown function DUF5362 RA13_12255 0014b1c0a27b5b2c3f2f09cd18613a46 114 SUPERFAMILY SSF50729 4 113 1.01E-27 T 13-10-2018 RA13_12255 0014b1c0a27b5b2c3f2f09cd18613a46 114 Gene3D G3DSA:2.30.29.50 5 113 4.4E-29 T 13-10-2018 IPR037063 Bacterial Pleckstrin homology domain superfamily RA13_12255 0014b1c0a27b5b2c3f2f09cd18613a46 114 Pfam PF08000 Bacterial PH domain 12 111 4.6E-24 T 13-10-2018 IPR012544 Bacterial Pleckstrin homology domain RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 SUPERFAMILY SSF55031 179 284 7.33E-21 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 104 142 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 Gene3D G3DSA:3.40.630.10 14 362 2.5E-136 T 13-10-2018 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 Pfam PF07687 Peptidase dimerisation domain 180 272 5.5E-15 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 SUPERFAMILY SSF53187 5 370 5.53E-65 T 13-10-2018 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 PIRSF PIRSF001123 257 371 3.0E-5 T 13-10-2018 IPR008007 Peptidase M42 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 PIRSF PIRSF001123 79 180 1.7E-5 T 13-10-2018 IPR008007 Peptidase M42 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 PIRSF PIRSF001123 4 100 2.4E-4 T 13-10-2018 IPR008007 Peptidase M42 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 Gene3D G3DSA:3.30.70.360 176 287 2.5E-136 T 13-10-2018 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 71 80 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 Pfam PF01546 Peptidase family M20/M25/M40 73 367 5.2E-26 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_10375 3c912959b68ceb1b59e84b7a7ea430f6 371 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 6 367 4.9E-183 T 13-10-2018 IPR010162 Peptidase M20B, peptidase T-like RA13_10740 37186e6a44c205612349cd20bc7e6684 342 SUPERFAMILY SSF51735 2 155 9.87E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10740 37186e6a44c205612349cd20bc7e6684 342 Gene3D G3DSA:3.30.360.10 128 336 1.3E-101 T 13-10-2018 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 239 2.6E-6 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 113 127 1.1E-7 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 308 324 1.1E-7 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 252 267 1.1E-7 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 2 15 1.1E-7 T 13-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 SUPERFAMILY SSF55347 130 317 5.4E-35 T 13-10-2018 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 Gene3D G3DSA:3.40.50.720 7 315 1.3E-101 T 13-10-2018 RA13_10740 37186e6a44c205612349cd20bc7e6684 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 123 2.5E-34 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 RA13_18220 aef49e0d5f87b28e6e70d6220e597ba5 775 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 560 761 1.1E-73 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal RA13_18220 aef49e0d5f87b28e6e70d6220e597ba5 775 SUPERFAMILY SSF57997 169 358 6.08E-6 T 13-10-2018 RA13_18220 aef49e0d5f87b28e6e70d6220e597ba5 775 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 7 170 1.1E-59 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal RA13_18220 aef49e0d5f87b28e6e70d6220e597ba5 775 Pfam PF12698 ABC-2 family transporter protein 21 756 2.2E-16 T 13-10-2018 RA13_18220 aef49e0d5f87b28e6e70d6220e597ba5 775 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 514 540 1.4E-4 T 13-10-2018 IPR023908 xxxLxxG heptad repeat RA13_10910 dc9273061b1fb53424123b1ae5fa3286 189 Pfam PF02517 CAAX protease self-immunity 77 158 2.2E-10 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 RA13_05770 26ebf5d84e993fe5bda61a57ec8f088b 467 PIRSF PIRSF006060 1 467 1.1E-61 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_05770 26ebf5d84e993fe5bda61a57ec8f088b 467 Gene3D G3DSA:1.20.1740.10 2 467 1.1E-66 T 13-10-2018 RA13_05770 26ebf5d84e993fe5bda61a57ec8f088b 467 Pfam PF13520 Amino acid permease 8 435 5.2E-59 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_20730 af4c456597e00e3244928e2e6be5e28c 287 SUPERFAMILY SSF103481 182 282 3.27E-8 T 13-10-2018 RA13_20730 af4c456597e00e3244928e2e6be5e28c 287 Pfam PF00892 EamA-like transporter family 6 129 4.2E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_20730 af4c456597e00e3244928e2e6be5e28c 287 Pfam PF00892 EamA-like transporter family 149 279 1.3E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_20730 af4c456597e00e3244928e2e6be5e28c 287 SUPERFAMILY SSF103481 46 143 8.89E-8 T 13-10-2018 RA13_13975 9b266c61677dd4865495325068a96062 71 Gene3D G3DSA:3.10.20.330 1 71 4.5E-30 T 13-10-2018 IPR038082 YopT domain superfamily RA13_13975 9b266c61677dd4865495325068a96062 71 SUPERFAMILY SSF159222 2 69 2.75E-28 T 13-10-2018 RA13_13975 9b266c61677dd4865495325068a96062 71 Pfam PF09467 Hypothetical protein Yopt 2 69 1.3E-32 T 13-10-2018 IPR018572 Protein of unknown function YopT RA13_21330 18cdf57923fd7fb1591184d1de3b2691 81 Pfam PF13129 Protein of unknown function (DUF3953) 34 73 9.1E-15 T 13-10-2018 IPR025018 Protein of unknown function DUF3953 RA13_04630 74fb54a4d507ee483431011fc3d7504d 374 Gene3D G3DSA:3.30.300.210 222 374 1.6E-51 T 13-10-2018 IPR038501 Spore germination GerAC superfamily RA13_04630 74fb54a4d507ee483431011fc3d7504d 374 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 5 372 2.3E-106 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_04630 74fb54a4d507ee483431011fc3d7504d 374 Gene3D G3DSA:3.10.450.290 25 91 2.9E-34 T 13-10-2018 RA13_04630 74fb54a4d507ee483431011fc3d7504d 374 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 204 370 1.6E-34 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_18500 a874be4a9e4f60b392669115f6473566 371 SUPERFAMILY SSF82689 249 352 5.75E-17 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RA13_18500 a874be4a9e4f60b392669115f6473566 371 Gene3D G3DSA:2.30.30.60 197 246 7.0E-14 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RA13_18500 a874be4a9e4f60b392669115f6473566 371 SUPERFAMILY SSF50182 181 247 1.86E-18 T 13-10-2018 IPR010920 LSM domain superfamily RA13_18500 a874be4a9e4f60b392669115f6473566 371 SUPERFAMILY SSF82861 98 180 7.59E-11 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RA13_18500 a874be4a9e4f60b392669115f6473566 371 Pfam PF00924 Mechanosensitive ion channel 139 341 5.9E-64 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RA13_18500 a874be4a9e4f60b392669115f6473566 371 Gene3D G3DSA:3.30.70.100 247 345 5.1E-16 T 13-10-2018 RA13_18500 a874be4a9e4f60b392669115f6473566 371 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 211 245 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 RA13_03530 1bad9af068b540e37811131480b26f8c 112 Gene3D G3DSA:1.10.10.10 1 109 4.1E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_03530 1bad9af068b540e37811131480b26f8c 112 SUPERFAMILY SSF46785 13 106 5.56E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_03530 1bad9af068b540e37811131480b26f8c 112 Pfam PF03551 Transcriptional regulator PadR-like family 15 87 2.6E-27 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 19 35 6.1E-17 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 43 59 6.1E-17 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 114 132 6.1E-17 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 PIRSF PIRSF005900 1 137 3.3E-47 T 13-10-2018 IPR002177 DNA-binding protein Dps RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 Pfam PF00210 Ferritin-like domain 2 137 4.4E-32 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 SUPERFAMILY SSF47240 1 137 9.8E-43 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 Gene3D G3DSA:1.20.1260.10 1 136 1.5E-53 T 13-10-2018 IPR012347 Ferritin-like RA13_05965 c4469b8f8baf7ce06c3bf5aacf4e4f37 137 ProSitePatterns PS00818 Dps protein family signature 1. 19 35 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 RA13_11435 dbf8afc434a16a115ce7bfaa48222f59 1194 SUPERFAMILY SSF52540 28 260 1.04E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11435 dbf8afc434a16a115ce7bfaa48222f59 1194 Gene3D G3DSA:3.40.50.300 46 286 7.4E-33 T 13-10-2018 RA13_11435 dbf8afc434a16a115ce7bfaa48222f59 1194 Pfam PF00350 Dynamin family 615 839 1.1E-36 T 13-10-2018 IPR022812 Dynamin superfamily RA13_11435 dbf8afc434a16a115ce7bfaa48222f59 1194 Pfam PF00350 Dynamin family 46 200 8.6E-25 T 13-10-2018 IPR022812 Dynamin superfamily RA13_11435 dbf8afc434a16a115ce7bfaa48222f59 1194 SUPERFAMILY SSF52540 599 879 1.31E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_16500 2ac828ddc78c3d68b324dcb99dfdc149 212 Pfam PF09335 SNARE associated Golgi protein 31 156 6.2E-23 T 13-10-2018 IPR032816 SNARE associated Golgi protein RA13_06015 d8a7083b1d1ecf0e60cf7c254f9acf0d 302 Pfam PF01619 Proline dehydrogenase 41 295 1.0E-33 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 RA13_06015 d8a7083b1d1ecf0e60cf7c254f9acf0d 302 Gene3D G3DSA:3.20.20.530 17 302 4.4E-94 T 13-10-2018 RA13_06015 d8a7083b1d1ecf0e60cf7c254f9acf0d 302 SUPERFAMILY SSF51730 34 297 8.63E-71 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like RA13_06015 d8a7083b1d1ecf0e60cf7c254f9acf0d 302 PIRSF PIRSF000196 1 302 2.2E-125 T 13-10-2018 IPR008219 Proline dehydrogenase, bacteria and archaea GO:0004657|GO:0010133 KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 RA13_15225 827bb793acfbf3f28d14da49bd438112 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 244 2.8E-74 T 13-10-2018 RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 9.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 9.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 9.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 7 245 6.9E-112 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RA13_15225 827bb793acfbf3f28d14da49bd438112 246 SUPERFAMILY SSF51735 4 246 1.62E-95 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_15225 827bb793acfbf3f28d14da49bd438112 246 Gene3D G3DSA:3.40.50.720 4 246 8.2E-95 T 13-10-2018 RA13_15225 827bb793acfbf3f28d14da49bd438112 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 185 3.8E-6 T 13-10-2018 RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 8.4E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.4E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 8.4E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 8.4E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 8.4E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15225 827bb793acfbf3f28d14da49bd438112 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 8.4E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 44 54 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PIRSF PIRSF000350 3 459 2.8E-99 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 330 3.5E-74 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 SUPERFAMILY SSF55424 346 468 2.75E-41 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 10 468 3.5E-183 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 6.2E-43 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 6.2E-43 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 6.2E-43 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 6.2E-43 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 6.2E-43 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 SUPERFAMILY SSF51905 7 340 1.86E-67 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 425 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 366 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 43 58 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.6E-75 T 13-10-2018 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 Gene3D G3DSA:3.30.390.30 348 468 6.2E-44 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 Gene3D G3DSA:3.50.50.60 13 335 3.1E-128 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 Gene3D G3DSA:3.50.50.60 152 273 3.1E-128 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_15885 6449f3efb194bf8c03f10a5b65dfead8 470 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 457 6.8E-38 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RA13_04795 fc4455e92440b7c8f25915c181c3e855 465 Gene3D G3DSA:3.40.50.300 124 287 1.2E-19 T 13-10-2018 RA13_04795 fc4455e92440b7c8f25915c181c3e855 465 Pfam PF00271 Helicase conserved C-terminal domain 326 425 2.9E-12 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_04795 fc4455e92440b7c8f25915c181c3e855 465 SMART SM00490 345 426 1.4E-11 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_04795 fc4455e92440b7c8f25915c181c3e855 465 Pfam PF04851 Type III restriction enzyme, res subunit 123 270 1.5E-8 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RA13_04795 fc4455e92440b7c8f25915c181c3e855 465 SMART SM00487 119 297 3.0E-16 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_04795 fc4455e92440b7c8f25915c181c3e855 465 SUPERFAMILY SSF52540 136 437 7.65E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04795 fc4455e92440b7c8f25915c181c3e855 465 Gene3D G3DSA:3.40.50.300 307 464 6.4E-22 T 13-10-2018 RA13_19920 d5f3e9457ea95bda7aeb9a63688f959a 206 Pfam PF04854 Protein of unknown function, DUF624 19 94 6.4E-29 T 13-10-2018 IPR006938 Protein of unknown function DUF624 RA13_18090 98a9f0741de47ca43f7924545838035b 432 SUPERFAMILY SSF58104 149 430 8.11E-49 T 13-10-2018 RA13_18090 98a9f0741de47ca43f7924545838035b 432 Gene3D G3DSA:1.10.287.950 230 432 2.0E-40 T 13-10-2018 RA13_18090 98a9f0741de47ca43f7924545838035b 432 Gene3D G3DSA:1.10.490.10 21 178 1.2E-43 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RA13_18090 98a9f0741de47ca43f7924545838035b 432 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 254 421 5.7E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_18090 98a9f0741de47ca43f7924545838035b 432 SUPERFAMILY SSF46458 12 177 4.14E-40 T 13-10-2018 IPR009050 Globin-like superfamily RA13_18090 98a9f0741de47ca43f7924545838035b 432 Pfam PF11563 Protoglobin 33 185 4.6E-41 T 13-10-2018 RA13_18090 98a9f0741de47ca43f7924545838035b 432 SMART SM00283 194 427 1.1E-22 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_17445 f103bfc0d7562d2957fc18859e9983d6 336 Gene3D G3DSA:3.40.50.720 2 247 1.1E-69 T 13-10-2018 RA13_17445 f103bfc0d7562d2957fc18859e9983d6 336 SUPERFAMILY SSF69572 3 326 5.49E-77 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RA13_17445 f103bfc0d7562d2957fc18859e9983d6 336 Pfam PF00899 ThiF family 5 234 2.7E-55 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RA13_18725 55ea40107deeb974eec2ed4183839632 303 Pfam PF03547 Membrane transport protein 152 295 1.3E-19 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RA13_18725 55ea40107deeb974eec2ed4183839632 303 Pfam PF03547 Membrane transport protein 7 137 2.2E-9 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RA13_18725 55ea40107deeb974eec2ed4183839632 303 Gene3D G3DSA:1.20.1530.20 158 301 1.3E-7 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 Gene3D G3DSA:2.70.210.12 1 157 1.9E-63 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 Hamap MF_01454 GTPase Obg [obg]. 1 329 48.684 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 Gene3D G3DSA:3.40.50.300 158 341 3.8E-63 T 13-10-2018 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 160 320 1.6E-12 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 Pfam PF01926 50S ribosome-binding GTPase 160 283 1.1E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 Pfam PF09269 Domain of unknown function (DUF1967) 358 426 3.7E-25 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 SUPERFAMILY SSF52540 160 332 2.01E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 PIRSF PIRSF002401 1 376 2.1E-145 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 SUPERFAMILY SSF102741 355 428 2.88E-24 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 328 2.7E-144 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 Pfam PF01018 GTP1/OBG 3 157 1.3E-61 T 13-10-2018 IPR006169 GTP1/OBG domain RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 4.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 4.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 4.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 4.7E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 358 426 1.8E-26 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 SUPERFAMILY SSF82051 1 157 8.11E-57 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily RA13_08775 faa3e307f3c70290820b45dfc375c0c0 428 Gene3D G3DSA:2.40.240.60 356 428 8.8E-19 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 SUPERFAMILY SSF51735 1 185 8.13E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 Gene3D G3DSA:3.40.50.720 1 188 3.2E-71 T 13-10-2018 RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 183 208 - T 13-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 183 9.5E-68 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 SUPERFAMILY SSF48179 185 283 5.19E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 PIRSF PIRSF000105 1 283 6.9E-94 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 282 2.3E-36 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RA13_10255 d69ddf12963cbad981f861c88cdb3891 283 Gene3D G3DSA:1.10.1040.10 193 278 1.9E-35 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_05475 68842b8d5a2327581e05c234b2902dd3 425 SUPERFAMILY SSF53187 28 421 4.57E-50 T 13-10-2018 RA13_05475 68842b8d5a2327581e05c234b2902dd3 425 SUPERFAMILY SSF52025 119 207 3.4E-12 T 13-10-2018 RA13_05475 68842b8d5a2327581e05c234b2902dd3 425 Gene3D G3DSA:3.40.630.10 56 412 2.0E-91 T 13-10-2018 RA13_05475 68842b8d5a2327581e05c234b2902dd3 425 Gene3D G3DSA:3.50.30.30 96 212 2.0E-91 T 13-10-2018 RA13_05475 68842b8d5a2327581e05c234b2902dd3 425 Pfam PF02225 PA domain 128 202 5.0E-12 T 13-10-2018 IPR003137 PA domain RA13_05475 68842b8d5a2327581e05c234b2902dd3 425 Pfam PF04389 Peptidase family M28 222 417 1.5E-36 T 13-10-2018 IPR007484 Peptidase M28 RA13_07595 8072ccfe30f9a80b691e6ef469cb77e0 233 SUPERFAMILY SSF52540 1 215 8.86E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_07595 8072ccfe30f9a80b691e6ef469cb77e0 233 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 210 30.058 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RA13_07595 8072ccfe30f9a80b691e6ef469cb77e0 233 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 172 8.8E-64 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RA13_07595 8072ccfe30f9a80b691e6ef469cb77e0 233 Pfam PF13500 AAA domain 3 210 5.2E-47 T 13-10-2018 RA13_07595 8072ccfe30f9a80b691e6ef469cb77e0 233 Gene3D G3DSA:3.40.50.300 1 224 1.5E-63 T 13-10-2018 RA13_07595 8072ccfe30f9a80b691e6ef469cb77e0 233 PIRSF PIRSF006755 1 229 2.5E-76 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RA13_14535 5ebc706e4695ab6993491b7293a2f94a 150 Gene3D G3DSA:3.30.300.20 7 145 4.6E-30 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_14535 5ebc706e4695ab6993491b7293a2f94a 150 TIGRFAM TIGR03563 perox_SACOL1771: peroxiredoxin, SACOL1771 subfamily 4 141 3.3E-69 T 13-10-2018 IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes RA13_14535 5ebc706e4695ab6993491b7293a2f94a 150 SUPERFAMILY SSF82784 3 141 1.44E-31 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RA13_14535 5ebc706e4695ab6993491b7293a2f94a 150 Pfam PF02566 OsmC-like protein 39 142 5.7E-16 T 13-10-2018 IPR003718 OsmC/Ohr family RA13_11180 6ab128b0415927f156063aaf6aa280c6 111 PIRSF PIRSF029904 1 111 2.4E-55 T 13-10-2018 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD RA13_11180 6ab128b0415927f156063aaf6aa280c6 111 SUPERFAMILY SSF101386 4 104 7.2E-29 T 13-10-2018 RA13_11180 6ab128b0415927f156063aaf6aa280c6 111 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 25 104 1.2E-21 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RA13_11180 6ab128b0415927f156063aaf6aa280c6 111 Gene3D G3DSA:1.10.287.1080 1 111 2.7E-38 T 13-10-2018 RA13_09990 e8f5031a188366df6a1a57061c44d194 119 Pfam PF15980 Putative Competence protein ComGF 10 106 3.8E-19 T 13-10-2018 IPR016977 Competence operon G, ComGF RA13_21150 8a6885cd8adbd32520ca057f000457a2 273 Gene3D G3DSA:3.30.1530.10 206 269 5.1E-27 T 13-10-2018 IPR027407 Manganese catalase, C-terminal RA13_21150 8a6885cd8adbd32520ca057f000457a2 273 Pfam PF05067 Manganese containing catalase 1 268 7.0E-128 T 13-10-2018 IPR007760 Manganese catalase RA13_21150 8a6885cd8adbd32520ca057f000457a2 273 SUPERFAMILY SSF47240 1 271 1.82E-98 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_21150 8a6885cd8adbd32520ca057f000457a2 273 Gene3D G3DSA:1.20.1260.10 1 198 2.7E-75 T 13-10-2018 IPR012347 Ferritin-like RA13_03160 15a8d09cbfa746f8c597f1d02a99b5e8 62 Pfam PF13396 Phospholipase_D-nuclease N-terminal 17 59 7.7E-13 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal RA13_12790 97f69f97d2e9fc8eccf69a56c0888e07 77 Pfam PF05979 Bacterial protein of unknown function (DUF896) 5 68 2.3E-30 T 13-10-2018 IPR009242 Protein of unknown function DUF896 RA13_12790 97f69f97d2e9fc8eccf69a56c0888e07 77 Hamap MF_01103 UPF0291 protein . 2 60 16.145 T 13-10-2018 IPR009242 Protein of unknown function DUF896 RA13_12790 97f69f97d2e9fc8eccf69a56c0888e07 77 Gene3D G3DSA:1.10.287.540 1 56 1.5E-25 T 13-10-2018 RA13_12790 97f69f97d2e9fc8eccf69a56c0888e07 77 SUPERFAMILY SSF158221 1 42 7.59E-13 T 13-10-2018 RA13_08965 78e436247c7cb06f2517ae9c3d2a0539 165 Gene3D G3DSA:3.30.70.1450 85 162 3.1E-18 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_08965 78e436247c7cb06f2517ae9c3d2a0539 165 SUPERFAMILY SSF116726 84 157 6.8E-16 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_08965 78e436247c7cb06f2517ae9c3d2a0539 165 PIRSF PIRSF005028 1 163 5.8E-58 T 13-10-2018 IPR026278 Potassium/proton antiporter subunit KhtT RA13_08965 78e436247c7cb06f2517ae9c3d2a0539 165 Pfam PF02080 TrkA-C domain 90 157 3.5E-14 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 Hamap MF_00141 Elongation factor P [efp]. 1 185 50.002 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site RA13_10105 ff89a7293438c663c9814d0fc1235482 185 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 2.1E-79 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 Gene3D G3DSA:2.40.50.140 128 185 1.2E-26 T 13-10-2018 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 Gene3D G3DSA:2.40.50.140 64 127 4.1E-24 T 13-10-2018 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 PIRSF PIRSF005901 1 185 1.8E-70 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP RA13_10105 ff89a7293438c663c9814d0fc1235482 185 Gene3D G3DSA:2.30.30.30 1 62 9.1E-32 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 SUPERFAMILY SSF50249 128 185 1.29E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_10105 ff89a7293438c663c9814d0fc1235482 185 SMART SM00841 129 184 5.6E-33 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 SUPERFAMILY SSF50104 1 62 4.63E-22 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily RA13_10105 ff89a7293438c663c9814d0fc1235482 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 7.3E-29 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like RA13_10105 ff89a7293438c663c9814d0fc1235482 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 119 3.7E-19 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 SUPERFAMILY SSF50249 65 129 4.11E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_10105 ff89a7293438c663c9814d0fc1235482 185 SMART SM01185 67 121 2.7E-23 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RA13_10105 ff89a7293438c663c9814d0fc1235482 185 Pfam PF09285 Elongation factor P, C-terminal 129 184 4.0E-26 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RA13_08490 956a3ab820627737e6007f2e66f8a5a7 148 Gene3D G3DSA:3.30.1380.20 1 148 1.8E-62 T 13-10-2018 RA13_08490 956a3ab820627737e6007f2e66f8a5a7 148 Pfam PF10702 Protein of unknown function (DUF2507) 20 141 3.8E-48 T 13-10-2018 IPR019642 Protein of unknown function DUF2507 RA13_08490 956a3ab820627737e6007f2e66f8a5a7 148 SUPERFAMILY SSF111126 17 127 5.75E-22 T 13-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily RA13_09195 c7e85f6eb9a5bf1c8e2c9c9b84071de0 122 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 4 111 4.1E-35 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 RA13_08055 d37712404563fbcf859c63313e73f51b 100 Pfam PF14007 YtpI-like protein 5 90 6.5E-34 T 13-10-2018 IPR025618 YtpI-like protein RA13_16010 dfc740feff4eb449076ec024dbaa7b39 397 SMART SM01066 57 132 0.0018 T 13-10-2018 IPR005085 Carbohydrate binding module family 25 GO:2001070 RA13_16010 dfc740feff4eb449076ec024dbaa7b39 397 Pfam PF02687 FtsX-like permease family 303 390 2.0E-13 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_16010 dfc740feff4eb449076ec024dbaa7b39 397 Pfam PF12704 MacB-like periplasmic core domain 21 238 9.8E-31 T 13-10-2018 IPR025857 MacB-like periplasmic core domain RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 Pfam PF01476 LysM domain 4 46 8.8E-11 T 13-10-2018 IPR018392 LysM domain RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 Pfam PF01476 LysM domain 50 93 1.8E-10 T 13-10-2018 IPR018392 LysM domain RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 Gene3D G3DSA:3.10.350.10 2 46 1.4E-14 T 13-10-2018 IPR036779 LysM domain superfamily RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 SUPERFAMILY SSF54106 2 46 1.7E-10 T 13-10-2018 RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 Pfam PF00704 Glycosyl hydrolases family 18 177 401 1.5E-29 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 SUPERFAMILY SSF54106 48 93 6.02E-9 T 13-10-2018 RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 SUPERFAMILY SSF51445 123 417 1.47E-47 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 SMART SM00636 94 404 7.0E-31 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 Gene3D G3DSA:3.10.350.10 48 93 2.1E-14 T 13-10-2018 IPR036779 LysM domain superfamily RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 Gene3D G3DSA:3.10.50.10 319 375 1.5E-109 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 Gene3D G3DSA:3.20.20.80 130 401 1.5E-109 T 13-10-2018 RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 SMART SM00257 3 46 4.1E-12 T 13-10-2018 IPR018392 LysM domain RA13_20590 565ec7bf9a8b78f9b1b2b70f4dce20f0 421 SMART SM00257 49 93 9.3E-14 T 13-10-2018 IPR018392 LysM domain RA13_06435 7d1503bf6cf6a432ad5198542b3d0dcc 407 SUPERFAMILY SSF51905 5 211 3.56E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06435 7d1503bf6cf6a432ad5198542b3d0dcc 407 Gene3D G3DSA:3.50.50.100 3 407 7.9E-142 T 13-10-2018 RA13_06435 7d1503bf6cf6a432ad5198542b3d0dcc 407 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 327 4.8E-43 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RA13_06435 7d1503bf6cf6a432ad5198542b3d0dcc 407 SUPERFAMILY SSF51905 151 339 2.09E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_06435 7d1503bf6cf6a432ad5198542b3d0dcc 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 160 178 5.7E-6 T 13-10-2018 RA13_06435 7d1503bf6cf6a432ad5198542b3d0dcc 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.7E-6 T 13-10-2018 RA13_06435 7d1503bf6cf6a432ad5198542b3d0dcc 407 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 5.7E-6 T 13-10-2018 RA13_10080 fd4e36be30a31f5afd28979ab0219633 131 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 5 131 1.0E-62 T 13-10-2018 RA13_14925 659c74f6b4e2dfdfc76e2ea3f36b45cb 240 PIRSF PIRSF005650 1 240 2.9E-98 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 RA13_14925 659c74f6b4e2dfdfc76e2ea3f36b45cb 240 SUPERFAMILY SSF53633 4 238 4.71E-74 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_14925 659c74f6b4e2dfdfc76e2ea3f36b45cb 240 Gene3D G3DSA:3.40.1160.10 1 239 1.1E-81 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RA13_14925 659c74f6b4e2dfdfc76e2ea3f36b45cb 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 6.1E-103 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RA13_14925 659c74f6b4e2dfdfc76e2ea3f36b45cb 240 Pfam PF00696 Amino acid kinase family 7 217 1.2E-28 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RA13_14925 659c74f6b4e2dfdfc76e2ea3f36b45cb 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 238 45.106 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RA13_19090 a6afdf1de0757f49daeb7671c9060c16 117 Hamap MF_01502 UPF0295 protein . 1 115 36.463 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 RA13_19090 a6afdf1de0757f49daeb7671c9060c16 117 Pfam PF11023 Zinc-ribbon containing domain 3 113 2.6E-59 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 RA13_19090 a6afdf1de0757f49daeb7671c9060c16 117 ProDom PD355753 MEMBRANE TRANSMEMBRANE UPF0295 BLI00901/BL05075 BT9727_0449 GK0479 BCE0593 YGZB PRECURSOR BA0538/GBAA0538/BAS0506 1 113 9.0E-45 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 ProSitePatterns PS01117 MarR-type HTH domain signature. 66 100 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 SUPERFAMILY SSF46785 29 141 4.18E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 SMART SM00347 27 127 2.0E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 Gene3D G3DSA:1.10.10.10 2 141 3.0E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 5.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 5.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 5.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 5.8E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_00510 5b9038a472dce69f794d8d474a9fa558 144 Pfam PF01047 MarR family 35 91 1.5E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_00075 ac13a13f76a97fe1725ce3b915afd0e6 193 Pfam PF02342 TerD domain 1 188 4.9E-84 T 13-10-2018 IPR003325 TerD domain RA13_00075 ac13a13f76a97fe1725ce3b915afd0e6 193 Gene3D G3DSA:2.60.60.30 19 187 9.3E-71 T 13-10-2018 RA13_21455 53d4be1a2c842d6302e7ba5faa74f808 104 SMART SM00418 16 94 4.5E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_21455 53d4be1a2c842d6302e7ba5faa74f808 104 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 6.6E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_21455 53d4be1a2c842d6302e7ba5faa74f808 104 Gene3D G3DSA:1.10.10.10 4 102 7.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21455 53d4be1a2c842d6302e7ba5faa74f808 104 SUPERFAMILY SSF46785 4 94 7.71E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21455 53d4be1a2c842d6302e7ba5faa74f808 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 2.8E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_21455 53d4be1a2c842d6302e7ba5faa74f808 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 65 80 2.8E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_21455 53d4be1a2c842d6302e7ba5faa74f808 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 2.8E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RA13_19510 620dd4103a4d53e97adf6683264705a5 171 Pfam PF01965 DJ-1/PfpI family 3 168 2.6E-57 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RA13_19510 620dd4103a4d53e97adf6683264705a5 171 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 4 170 2.2E-58 T 13-10-2018 IPR006286 Deglycase PfpI RA13_19510 620dd4103a4d53e97adf6683264705a5 171 Gene3D G3DSA:3.40.50.880 1 171 1.3E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_19510 620dd4103a4d53e97adf6683264705a5 171 SUPERFAMILY SSF52317 1 170 1.12E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_02445 0c284679f67b292be266f6635c7d86b9 421 Pfam PF02447 GntP family permease 11 414 5.3E-19 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RA13_02445 0c284679f67b292be266f6635c7d86b9 421 PRINTS PR01988 Putative bacilysin exporter bacE signature 303 326 8.6E-5 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RA13_02445 0c284679f67b292be266f6635c7d86b9 421 PRINTS PR01988 Putative bacilysin exporter bacE signature 171 193 8.6E-5 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RA13_02445 0c284679f67b292be266f6635c7d86b9 421 PRINTS PR01988 Putative bacilysin exporter bacE signature 19 37 8.6E-5 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 RA13_11410 1c1f03161c2db8f38bab1387e325c710 194 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 191 6.1E-96 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 RA13_11410 1c1f03161c2db8f38bab1387e325c710 194 SUPERFAMILY SSF53271 2 188 1.7E-45 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_11410 1c1f03161c2db8f38bab1387e325c710 194 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 42.247 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 RA13_11410 1c1f03161c2db8f38bab1387e325c710 194 Gene3D G3DSA:3.40.50.2020 3 188 2.6E-56 T 13-10-2018 RA13_11410 1c1f03161c2db8f38bab1387e325c710 194 Pfam PF00156 Phosphoribosyl transferase domain 43 157 5.3E-8 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RA13_10090 82096d316acbf67e2fe36b365598b94f 175 ProDom PD101610 MEMBRANE YQHR BH2802 TRANSMEMBRANE IG 14 160 3.0E-56 T 13-10-2018 IPR024563 Uncharacterised protein family YqhR RA13_10090 82096d316acbf67e2fe36b365598b94f 175 Pfam PF11085 Conserved membrane protein YqhR 6 168 2.0E-75 T 13-10-2018 IPR024563 Uncharacterised protein family YqhR RA13_09210 45a491e470784f7c564294d2494547fd 49 TIGRFAM TIGR02413 Bac_small_yrzI: Bacillus tandem small hypothetical protein 1 48 1.1E-17 T 13-10-2018 IPR012655 Uncharacterised protein YrzI RA13_09210 45a491e470784f7c564294d2494547fd 49 Pfam PF09501 Probable sporulation protein (Bac_small_yrzI) 1 44 1.6E-18 T 13-10-2018 IPR012655 Uncharacterised protein YrzI RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 Pfam PF06483 Chitinase C 532 692 4.9E-60 T 13-10-2018 IPR009470 Chitinase, C-terminal KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 SUPERFAMILY SSF54556 379 489 1.2E-16 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 Pfam PF00704 Glycosyl hydrolases family 18 69 519 1.3E-82 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 SUPERFAMILY SSF51445 67 522 1.32E-72 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 Gene3D G3DSA:3.10.50.10 457 494 9.2E-11 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 Gene3D G3DSA:3.20.20.80 495 519 9.2E-11 T 13-10-2018 RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 ProSitePatterns PS01095 Chitinases family 18 active site. 221 229 - T 13-10-2018 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 Gene3D G3DSA:3.20.20.80 52 401 1.5E-77 T 13-10-2018 RA13_08865 98fbb9145bd81d0eaf5b892cae2fa014 693 SMART SM00636 68 519 1.2E-109 T 13-10-2018 IPR011583 Chitinase II GO:0008061 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 4 488 1.1E-189 T 13-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 Pfam PF00890 FAD binding domain 6 370 3.5E-79 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 Gene3D G3DSA:3.90.700.10 230 336 3.0E-127 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 Gene3D G3DSA:1.20.58.100 405 509 7.3E-18 T 13-10-2018 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 333 355 5.2E-5 T 13-10-2018 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 5.2E-5 T 13-10-2018 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 Gene3D G3DSA:3.50.50.60 6 382 3.0E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_08800 ec57fb9032247cda89c5c22445daec75 522 SUPERFAMILY SSF46977 411 505 5.89E-22 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 SUPERFAMILY SSF51905 6 393 6.33E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_08800 ec57fb9032247cda89c5c22445daec75 522 SUPERFAMILY SSF56425 220 330 1.17E-30 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08800 ec57fb9032247cda89c5c22445daec75 522 Pfam PF02910 Fumarate reductase flavoprotein C-term 412 501 4.0E-14 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_16115 b49c388dace6563ba9f64bd44578b508 297 Gene3D G3DSA:2.130.10.10 2 153 1.9E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_16115 b49c388dace6563ba9f64bd44578b508 297 SUPERFAMILY SSF110296 9 284 3.14E-22 T 13-10-2018 RA13_20505 89a8d7fa6e378da9ae9ff8f3a3768106 242 Pfam PF03591 AzlC protein 27 167 1.9E-38 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease RA13_09945 9c580da30ee7f7c00096149518c4c365 283 Pfam PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 8 108 2.8E-6 T 13-10-2018 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain RA13_09945 9c580da30ee7f7c00096149518c4c365 283 Gene3D G3DSA:3.30.750.24 163 278 1.0E-34 T 13-10-2018 IPR036513 STAS domain superfamily RA13_09945 9c580da30ee7f7c00096149518c4c365 283 SUPERFAMILY SSF52091 165 261 1.59E-15 T 13-10-2018 IPR036513 STAS domain superfamily RA13_09945 9c580da30ee7f7c00096149518c4c365 283 Pfam PF01740 STAS domain 168 264 6.7E-15 T 13-10-2018 IPR002645 STAS domain RA13_04985 9b2591d4eff66640c2383c5057154973 119 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 3 106 1.9E-27 T 13-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV RA13_09965 89a5cb75b891992f476bef09d76bafa8 356 Pfam PF00437 Type II/IV secretion system protein 13 275 1.5E-75 T 13-10-2018 IPR001482 Type II/IV secretion system protein RA13_09965 89a5cb75b891992f476bef09d76bafa8 356 SMART SM00382 136 259 7.4E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_09965 89a5cb75b891992f476bef09d76bafa8 356 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 204 218 - T 13-10-2018 IPR001482 Type II/IV secretion system protein RA13_09965 89a5cb75b891992f476bef09d76bafa8 356 Gene3D G3DSA:3.40.50.300 111 341 5.5E-64 T 13-10-2018 RA13_09965 89a5cb75b891992f476bef09d76bafa8 356 SUPERFAMILY SSF52540 3 307 3.77E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09965 89a5cb75b891992f476bef09d76bafa8 356 Gene3D G3DSA:3.30.450.90 2 110 5.1E-29 T 13-10-2018 RA13_01560 86a1e0ea3a551c844bc4f9d674319951 329 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 241 325 3.4E-6 T 13-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_01560 86a1e0ea3a551c844bc4f9d674319951 329 Gene3D G3DSA:3.40.50.300 7 169 4.2E-52 T 13-10-2018 RA13_01560 86a1e0ea3a551c844bc4f9d674319951 329 Pfam PF13177 DNA polymerase III, delta subunit 12 169 9.4E-59 T 13-10-2018 RA13_01560 86a1e0ea3a551c844bc4f9d674319951 329 SUPERFAMILY SSF52540 12 199 1.29E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01560 86a1e0ea3a551c844bc4f9d674319951 329 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 17 199 6.6E-66 T 13-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RA13_06300 e7166b06ddba6dd319c0bb16a84bc0ca 273 Pfam PF01925 Sulfite exporter TauE/SafE 6 265 7.8E-59 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RA13_17815 277e3bedcfc02aed763e58bb1b467b3a 371 Gene3D G3DSA:3.30.390.10 1 106 4.8E-32 T 13-10-2018 IPR029017 Enolase-like, N-terminal RA13_17815 277e3bedcfc02aed763e58bb1b467b3a 371 SUPERFAMILY SSF54826 1 115 6.75E-25 T 13-10-2018 RA13_17815 277e3bedcfc02aed763e58bb1b467b3a 371 SUPERFAMILY SSF51604 102 368 3.28E-57 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_17815 277e3bedcfc02aed763e58bb1b467b3a 371 Pfam PF13378 Enolase C-terminal domain-like 147 359 5.3E-55 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RA13_17815 277e3bedcfc02aed763e58bb1b467b3a 371 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 18 114 7.0E-8 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RA13_17815 277e3bedcfc02aed763e58bb1b467b3a 371 Gene3D G3DSA:3.20.20.120 107 370 3.3E-74 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_17815 277e3bedcfc02aed763e58bb1b467b3a 371 SMART SM00922 138 235 1.8E-12 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RA13_09575 c37662267206385f29bce7124140ed0e 376 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 41.295 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RA13_09575 c37662267206385f29bce7124140ed0e 376 Gene3D G3DSA:2.60.260.20 116 252 2.2E-36 T 13-10-2018 RA13_09575 c37662267206385f29bce7124140ed0e 376 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 13-10-2018 IPR018253 DnaJ domain, conserved site RA13_09575 c37662267206385f29bce7124140ed0e 376 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 352 3.7E-140 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RA13_09575 c37662267206385f29bce7124140ed0e 376 SUPERFAMILY SSF49493 261 347 1.57E-25 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RA13_09575 c37662267206385f29bce7124140ed0e 376 SMART SM00271 4 61 2.3E-29 T 13-10-2018 IPR001623 DnaJ domain RA13_09575 c37662267206385f29bce7124140ed0e 376 Pfam PF00226 DnaJ domain 5 66 2.5E-26 T 13-10-2018 IPR001623 DnaJ domain RA13_09575 c37662267206385f29bce7124140ed0e 376 Gene3D G3DSA:2.60.260.20 256 336 3.5E-30 T 13-10-2018 RA13_09575 c37662267206385f29bce7124140ed0e 376 Pfam PF00684 DnaJ central domain 146 210 1.4E-13 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RA13_09575 c37662267206385f29bce7124140ed0e 376 Pfam PF01556 DnaJ C terminal domain 119 336 3.8E-43 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal RA13_09575 c37662267206385f29bce7124140ed0e 376 Gene3D G3DSA:2.10.230.10 146 210 2.2E-36 T 13-10-2018 RA13_09575 c37662267206385f29bce7124140ed0e 376 SUPERFAMILY SSF49493 113 260 1.7E-19 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RA13_09575 c37662267206385f29bce7124140ed0e 376 SUPERFAMILY SSF57938 133 214 1.19E-17 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RA13_09575 c37662267206385f29bce7124140ed0e 376 Gene3D G3DSA:1.10.287.110 1 111 2.8E-38 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RA13_09575 c37662267206385f29bce7124140ed0e 376 PRINTS PR00625 DnaJ domain signature 41 61 3.8E-31 T 13-10-2018 IPR001623 DnaJ domain RA13_09575 c37662267206385f29bce7124140ed0e 376 PRINTS PR00625 DnaJ domain signature 25 40 3.8E-31 T 13-10-2018 IPR001623 DnaJ domain RA13_09575 c37662267206385f29bce7124140ed0e 376 PRINTS PR00625 DnaJ domain signature 7 25 3.8E-31 T 13-10-2018 IPR001623 DnaJ domain RA13_09575 c37662267206385f29bce7124140ed0e 376 PRINTS PR00625 DnaJ domain signature 61 80 3.8E-31 T 13-10-2018 IPR001623 DnaJ domain RA13_09575 c37662267206385f29bce7124140ed0e 376 SUPERFAMILY SSF46565 1 104 7.98E-38 T 13-10-2018 IPR036869 Chaperone J-domain superfamily RA13_12235 a01b572d7a3bc3e7160031df4e2cbf99 629 TIGRFAM TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases 15 619 5.5E-111 T 13-10-2018 IPR018333 Squalene cyclase GO:0016866 Reactome: R-HSA-191273|Reactome: R-HSA-2426168 RA13_12235 a01b572d7a3bc3e7160031df4e2cbf99 629 SUPERFAMILY SSF48239 299 620 8.63E-83 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RA13_12235 a01b572d7a3bc3e7160031df4e2cbf99 629 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 16 297 2.1E-58 T 13-10-2018 IPR032697 Squalene cyclase, N-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 RA13_12235 a01b572d7a3bc3e7160031df4e2cbf99 629 Gene3D G3DSA:1.50.10.20 16 619 1.4E-184 T 13-10-2018 RA13_12235 a01b572d7a3bc3e7160031df4e2cbf99 629 Gene3D G3DSA:1.50.10.20 33 307 1.4E-184 T 13-10-2018 RA13_12235 a01b572d7a3bc3e7160031df4e2cbf99 629 Pfam PF13243 Squalene-hopene cyclase C-terminal domain 309 619 4.9E-87 T 13-10-2018 IPR032696 Squalene cyclase, C-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 RA13_12235 a01b572d7a3bc3e7160031df4e2cbf99 629 SUPERFAMILY SSF48239 35 300 4.19E-45 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid RA13_16330 6a6508fffef6a85dab01c6a8f8a3bfdf 146 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 16 110 1.8E-28 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RA13_16330 6a6508fffef6a85dab01c6a8f8a3bfdf 146 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 17 138 2.9E-28 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RA13_16330 6a6508fffef6a85dab01c6a8f8a3bfdf 146 PIRSF PIRSF006113 13 140 1.4E-19 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RA13_16330 6a6508fffef6a85dab01c6a8f8a3bfdf 146 Gene3D G3DSA:3.30.479.10 3 140 4.2E-29 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 RA13_16330 6a6508fffef6a85dab01c6a8f8a3bfdf 146 SUPERFAMILY SSF55620 11 139 4.11E-32 T 13-10-2018 RA13_16330 6a6508fffef6a85dab01c6a8f8a3bfdf 146 TIGRFAM TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein 15 141 9.0E-39 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RA13_07635 6dbb9e77cce1a8767096fd94fc27cd47 371 SUPERFAMILY SSF48208 11 365 1.39E-76 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RA13_07635 6dbb9e77cce1a8767096fd94fc27cd47 371 Pfam PF07470 Glycosyl Hydrolase Family 88 14 365 6.5E-114 T 13-10-2018 IPR010905 Glycosyl hydrolase, family 88 RA13_07635 6dbb9e77cce1a8767096fd94fc27cd47 371 Gene3D G3DSA:1.50.10.10 1 371 1.4E-143 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RA13_16425 19f51e636e31d632e84085674e310828 353 Gene3D G3DSA:3.40.50.10470 149 353 8.2E-73 T 13-10-2018 RA13_16425 19f51e636e31d632e84085674e310828 353 Gene3D G3DSA:1.20.120.420 1 148 2.9E-51 T 13-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 RA13_16425 19f51e636e31d632e84085674e310828 353 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 9 336 3.8E-142 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 RA13_16425 19f51e636e31d632e84085674e310828 353 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 347 38.997 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 RA13_16425 19f51e636e31d632e84085674e310828 353 Pfam PF01008 Initiation factor 2 subunit family 49 336 1.4E-95 T 13-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 RA13_16425 19f51e636e31d632e84085674e310828 353 SUPERFAMILY SSF100950 5 342 9.07E-117 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_16425 19f51e636e31d632e84085674e310828 353 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 36 336 1.5E-137 T 13-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 RA13_10085 d190e016c363d289d76c4f0965ec2c25 299 Pfam PF07136 Protein of unknown function (DUF1385) 38 282 2.5E-77 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 RA13_10085 d190e016c363d289d76c4f0965ec2c25 299 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 38 277 6.0E-116 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 RA13_03990 f25c4281332b1bd6babd670da2763f23 185 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 7 185 21.257 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP RA13_03990 f25c4281332b1bd6babd670da2763f23 185 Pfam PF02659 Putative manganese efflux pump 35 182 3.3E-41 T 13-10-2018 IPR003810 Putative manganese efflux pump RA13_03935 c307f3620407ce5221d06e355c087dad 581 SUPERFAMILY SSF53223 12 289 2.59E-103 T 13-10-2018 RA13_03935 c307f3620407ce5221d06e355c087dad 581 SMART SM01274 98 280 1.1E-93 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_03935 c307f3620407ce5221d06e355c087dad 581 Gene3D G3DSA:3.40.50.10380 32 287 8.4E-103 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PRINTS PR00072 Malic enzyme signature 202 224 2.5E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PRINTS PR00072 Malic enzyme signature 317 333 2.5E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PRINTS PR00072 Malic enzyme signature 261 279 2.5E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PRINTS PR00072 Malic enzyme signature 428 444 2.5E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PRINTS PR00072 Malic enzyme signature 286 302 2.5E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PRINTS PR00072 Malic enzyme signature 104 128 2.5E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PRINTS PR00072 Malic enzyme signature 166 195 2.5E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 PIRSF PIRSF000106 8 581 1.1E-229 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_03935 c307f3620407ce5221d06e355c087dad 581 SMART SM00919 290 550 7.1E-122 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RA13_03935 c307f3620407ce5221d06e355c087dad 581 Pfam PF00390 Malic enzyme, N-terminal domain 98 280 1.3E-73 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_03935 c307f3620407ce5221d06e355c087dad 581 Gene3D G3DSA:3.40.50.720 288 581 1.3E-107 T 13-10-2018 RA13_03935 c307f3620407ce5221d06e355c087dad 581 Pfam PF03949 Malic enzyme, NAD binding domain 290 550 4.6E-104 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RA13_03935 c307f3620407ce5221d06e355c087dad 581 ProSitePatterns PS00331 Malic enzymes signature. 286 302 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RA13_03935 c307f3620407ce5221d06e355c087dad 581 SUPERFAMILY SSF51735 290 578 4.33E-92 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_20675 a5ff6e14a7992ee0064dc8ef4684911a 885 SUPERFAMILY SSF82866 120 333 1.15E-32 T 13-10-2018 RA13_20675 a5ff6e14a7992ee0064dc8ef4684911a 885 Pfam PF03176 MMPL family 45 358 2.6E-74 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RA13_20675 a5ff6e14a7992ee0064dc8ef4684911a 885 Pfam PF03176 MMPL family 554 881 5.3E-50 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RA13_20675 a5ff6e14a7992ee0064dc8ef4684911a 885 Gene3D G3DSA:1.20.1640.10 143 342 6.6E-10 T 13-10-2018 RA13_20675 a5ff6e14a7992ee0064dc8ef4684911a 885 SUPERFAMILY SSF82866 667 877 3.14E-29 T 13-10-2018 RA13_00985 74be2f7d785ba7e3f49c9ced117aa06d 61 Pfam PF00253 Ribosomal protein S14p/S29e 9 60 1.3E-25 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_00985 74be2f7d785ba7e3f49c9ced117aa06d 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 25.948 T 13-10-2018 IPR023053 Ribosomal protein S14, type Z RA13_00985 74be2f7d785ba7e3f49c9ced117aa06d 61 Gene3D G3DSA:4.10.830.10 1 61 1.8E-30 T 13-10-2018 RA13_00985 74be2f7d785ba7e3f49c9ced117aa06d 61 SUPERFAMILY SSF57716 3 61 6.99E-22 T 13-10-2018 RA13_00985 74be2f7d785ba7e3f49c9ced117aa06d 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_07465 28e24c8cbf527ce4bbc16015955cd7fe 171 SUPERFAMILY SSF51161 2 169 3.74E-47 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily RA13_07465 28e24c8cbf527ce4bbc16015955cd7fe 171 Gene3D G3DSA:2.160.10.10 1 171 3.3E-72 T 13-10-2018 RA13_07465 28e24c8cbf527ce4bbc16015955cd7fe 171 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 44 0.0014 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_07465 28e24c8cbf527ce4bbc16015955cd7fe 171 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 120 6.2E-8 T 13-10-2018 IPR001451 Hexapeptide repeat RA13_12860 8a1facb2b70e607806685bea711f304b 237 Pfam PF06912 Protein of unknown function (DUF1275) 19 224 4.0E-35 T 13-10-2018 IPR010699 Protein of unknown function DUF1275 RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 SMART SM00871 125 272 8.5E-11 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 Gene3D G3DSA:1.10.1660.10 2 122 8.8E-29 T 13-10-2018 RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 Pfam PF06445 GyrI-like small molecule binding domain 130 272 1.6E-11 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 Gene3D G3DSA:3.20.80.10 123 274 1.0E-26 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 SUPERFAMILY SSF46955 2 107 1.03E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 SMART SM00422 2 72 5.7E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 Pfam PF13411 MerR HTH family regulatory protein 3 70 8.3E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_00580 e8c8e8f6c0719277c73416896f0964eb 283 SUPERFAMILY SSF55136 126 271 6.28E-16 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily RA13_01595 e2b5ad7d31e1709212d87c6bd2fc700f 64 Pfam PF10764 Inhibitor of sigma-G Gin 11 55 1.5E-20 T 13-10-2018 IPR019700 Anti-sigma-G factor Gin RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 SUPERFAMILY SSF55315 2 78 7.65E-19 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 Pfam PF00588 SpoU rRNA Methylase family 98 238 2.1E-39 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 81 7.2E-22 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 Gene3D G3DSA:3.40.1280.10 77 245 2.2E-58 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 Gene3D G3DSA:3.30.1330.30 1 76 1.0E-14 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 244 4.6E-95 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 SMART SM00967 7 81 5.2E-20 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RA13_01150 261edeb1d595f7d37d9a6c5abfa3658b 249 SUPERFAMILY SSF75217 69 245 3.47E-49 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases RA13_04915 1adcea0043524bd3608b2e915505d085 483 Pfam PF03572 Peptidase family S41 217 377 1.9E-49 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RA13_04915 1adcea0043524bd3608b2e915505d085 483 SUPERFAMILY SSF50156 86 205 4.99E-22 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 RA13_04915 1adcea0043524bd3608b2e915505d085 483 SUPERFAMILY SSF52096 51 385 9.05E-70 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_04915 1adcea0043524bd3608b2e915505d085 483 Gene3D G3DSA:3.30.750.44 63 354 7.4E-91 T 13-10-2018 RA13_04915 1adcea0043524bd3608b2e915505d085 483 SMART SM00245 188 379 1.2E-81 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RA13_04915 1adcea0043524bd3608b2e915505d085 483 SMART SM00228 115 186 2.7E-16 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_04915 1adcea0043524bd3608b2e915505d085 483 Gene3D G3DSA:1.10.101.10 388 466 2.9E-13 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_04915 1adcea0043524bd3608b2e915505d085 483 Gene3D G3DSA:2.30.42.10 115 202 7.4E-91 T 13-10-2018 RA13_04915 1adcea0043524bd3608b2e915505d085 483 SUPERFAMILY SSF47090 388 459 1.73E-14 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_04915 1adcea0043524bd3608b2e915505d085 483 Pfam PF13180 PDZ domain 116 192 5.7E-15 T 13-10-2018 IPR001478 PDZ domain GO:0005515 RA13_04915 1adcea0043524bd3608b2e915505d085 483 Pfam PF01471 Putative peptidoglycan binding domain 401 456 1.9E-12 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_04915 1adcea0043524bd3608b2e915505d085 483 Gene3D G3DSA:3.90.226.10 203 376 7.4E-91 T 13-10-2018 RA13_04915 1adcea0043524bd3608b2e915505d085 483 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 67 401 1.6E-132 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 SUPERFAMILY SSF69118 21 106 1.44E-21 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 Pfam PF02627 Carboxymuconolactone decarboxylase family 26 106 9.3E-18 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 Pfam PF02627 Carboxymuconolactone decarboxylase family 134 214 1.4E-21 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 89 5.1E-16 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 151 198 4.1E-18 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 SUPERFAMILY SSF69118 121 214 2.49E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 Gene3D G3DSA:1.20.1290.10 8 116 3.2E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RA13_13145 b4c12593af54189b4e0c1c2444bb095e 219 Gene3D G3DSA:1.20.1290.10 118 219 8.4E-29 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RA13_09275 fbd61effd697149428939937c099d246 248 Gene3D G3DSA:2.40.400.10 15 246 8.5E-85 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RA13_09275 fbd61effd697149428939937c099d246 248 SUPERFAMILY SSF160104 9 245 9.94E-83 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RA13_09275 fbd61effd697149428939937c099d246 248 Pfam PF06314 Acetoacetate decarboxylase (ADC) 14 245 5.4E-74 T 13-10-2018 IPR010451 Acetoacetate decarboxylase GO:0016829 KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RA13_13780 daa1e148a4274a5708573d5719ed6be0 381 PIRSF PIRSF014669 2 378 7.7E-199 T 13-10-2018 IPR016622 Bacteriophage SP-beta, YorJ RA13_13780 daa1e148a4274a5708573d5719ed6be0 381 Gene3D G3DSA:3.90.580.10 3 107 7.0E-6 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 RA13_13780 daa1e148a4274a5708573d5719ed6be0 381 Gene3D G3DSA:3.40.1360.10 229 368 8.4E-6 T 13-10-2018 RA13_13780 daa1e148a4274a5708573d5719ed6be0 381 SUPERFAMILY SSF56731 159 300 6.02E-6 T 13-10-2018 RA13_18895 08f9aa891bb5ab7fb1427dd6de6537b0 319 Pfam PF12671 Putative amidase domain 157 309 2.3E-38 T 13-10-2018 IPR024301 Putative amidase domain RA13_05305 1dd5cbda939c41df34b1ede1255000fd 598 Gene3D G3DSA:3.40.50.720 266 584 5.7E-114 T 13-10-2018 RA13_05305 1dd5cbda939c41df34b1ede1255000fd 598 SUPERFAMILY SSF51735 268 532 2.11E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05305 1dd5cbda939c41df34b1ede1255000fd 598 SUPERFAMILY SSF51735 130 258 3.94E-13 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05305 1dd5cbda939c41df34b1ede1255000fd 598 Gene3D G3DSA:3.40.50.720 126 252 4.3E-31 T 13-10-2018 RA13_05305 1dd5cbda939c41df34b1ede1255000fd 598 Pfam PF13727 CoA-binding domain 64 226 4.7E-15 T 13-10-2018 RA13_05305 1dd5cbda939c41df34b1ede1255000fd 598 Pfam PF02719 Polysaccharide biosynthesis protein 271 552 1.6E-120 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RA13_15155 6f2652b07e6fdab1d9c441e014d203ae 255 Gene3D G3DSA:3.30.420.10 49 255 1.5E-78 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RA13_15155 6f2652b07e6fdab1d9c441e014d203ae 255 Pfam PF01351 Ribonuclease HII 75 250 1.9E-33 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain RA13_15155 6f2652b07e6fdab1d9c441e014d203ae 255 SUPERFAMILY SSF53098 64 254 8.19E-68 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_15155 6f2652b07e6fdab1d9c441e014d203ae 255 Hamap MF_00052_B Ribonuclease HII [rnhB]. 73 251 38.461 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 RA13_20060 e3215a5eb8cc1d15e887c8385dfca12c 232 PRINTS PR01837 MgtC/SapB protein signature 71 93 4.4E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_20060 e3215a5eb8cc1d15e887c8385dfca12c 232 PRINTS PR01837 MgtC/SapB protein signature 99 123 4.4E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_20060 e3215a5eb8cc1d15e887c8385dfca12c 232 PRINTS PR01837 MgtC/SapB protein signature 37 55 4.4E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_20060 e3215a5eb8cc1d15e887c8385dfca12c 232 PRINTS PR01837 MgtC/SapB protein signature 18 37 4.4E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_20060 e3215a5eb8cc1d15e887c8385dfca12c 232 Pfam PF02308 MgtC family 15 143 9.1E-33 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_21285 392bd7047136a1771a98608ec55cd673 142 SUPERFAMILY SSF50475 5 132 1.48E-30 T 13-10-2018 RA13_21285 392bd7047136a1771a98608ec55cd673 142 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 7 132 2.6E-19 T 13-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain RA13_21285 392bd7047136a1771a98608ec55cd673 142 Gene3D G3DSA:2.30.110.10 2 130 1.4E-40 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RA13_06915 c5ea8b06e48513b18d044287bfcf80a9 104 Pfam PF05336 L-rhamnose mutarotase 3 103 9.8E-31 T 13-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 RA13_06915 c5ea8b06e48513b18d044287bfcf80a9 104 Gene3D G3DSA:3.30.70.100 1 97 9.3E-39 T 13-10-2018 RA13_06915 c5ea8b06e48513b18d044287bfcf80a9 104 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 1 104 32.398 T 13-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 RA13_06915 c5ea8b06e48513b18d044287bfcf80a9 104 SUPERFAMILY SSF54909 1 103 7.38E-39 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_06915 c5ea8b06e48513b18d044287bfcf80a9 104 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 3 103 4.0E-52 T 13-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 RA13_02770 06f4060d24a5959e5e8f3ff2fe1f5f69 455 ProDom PD031536 MEMBRANE TRANSMEMBRANE YVAX YITN 199 285 0.006 T 13-10-2018 RA13_02770 06f4060d24a5959e5e8f3ff2fe1f5f69 455 Pfam PF04134 Protein of unknown function, DUF393 331 435 2.3E-14 T 13-10-2018 IPR007263 Protein of unknown function DUF393 RA13_02770 06f4060d24a5959e5e8f3ff2fe1f5f69 455 Pfam PF05090 Vitamin K-dependent gamma-carboxylase 63 366 5.1E-8 T 13-10-2018 IPR007782 Vitamin K-dependent gamma-carboxylase GO:0008488|GO:0017187 KEGG: 00130+4.1.1.90|Reactome: R-HSA-159740 RA13_02770 06f4060d24a5959e5e8f3ff2fe1f5f69 455 SMART SM00752 20 291 3.8E-26 T 13-10-2018 IPR011020 HTTM Reactome: R-HSA-159740 RA13_04475 78a584da72465f6c17ee7de13ed121d7 232 SUPERFAMILY SSF51366 2 216 1.41E-52 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_04475 78a584da72465f6c17ee7de13ed121d7 232 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 198 1.2E-60 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RA13_04475 78a584da72465f6c17ee7de13ed121d7 232 Gene3D G3DSA:3.20.20.70 4 229 6.8E-74 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_04475 78a584da72465f6c17ee7de13ed121d7 232 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 134 156 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RA13_14930 69707dab67d572891aa64c119ccf4002 293 SUPERFAMILY SSF54713 55 144 8.83E-23 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RA13_14930 69707dab67d572891aa64c119ccf4002 293 SUPERFAMILY SSF46934 3 54 1.93E-20 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 RA13_14930 69707dab67d572891aa64c119ccf4002 293 Gene3D G3DSA:3.30.479.20 56 147 2.5E-25 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RA13_14930 69707dab67d572891aa64c119ccf4002 293 Gene3D G3DSA:1.10.8.10 1 55 1.5E-27 T 13-10-2018 RA13_14930 69707dab67d572891aa64c119ccf4002 293 Gene3D G3DSA:1.10.286.20 199 236 4.6E-20 T 13-10-2018 RA13_14930 69707dab67d572891aa64c119ccf4002 293 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 293 2.3E-129 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_14930 69707dab67d572891aa64c119ccf4002 293 Pfam PF00889 Elongation factor TS 70 274 1.8E-75 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 RA13_14930 69707dab67d572891aa64c119ccf4002 293 Hamap MF_00050 Elongation factor Ts [tsf]. 1 291 81.914 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_14930 69707dab67d572891aa64c119ccf4002 293 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_14930 69707dab67d572891aa64c119ccf4002 293 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RA13_14930 69707dab67d572891aa64c119ccf4002 293 SUPERFAMILY SSF54713 152 292 4.71E-52 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RA13_07535 6c19b6f50830e5a338f531f64edea0e7 646 Pfam PF02687 FtsX-like permease family 85 179 1.6E-7 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_07535 6c19b6f50830e5a338f531f64edea0e7 646 PIRSF PIRSF018968 1 646 3.0E-150 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 RA13_09245 7be68c90bb9f9807a19bf07c8ff481d8 91 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 10 89 4.0E-24 T 13-10-2018 RA13_09245 7be68c90bb9f9807a19bf07c8ff481d8 91 Pfam PF14145 YrhK-like protein 22 77 7.8E-22 T 13-10-2018 IPR025424 YrhK domain RA13_06280 ce70f41238f91e7f6bbcf57d74c00719 447 Gene3D G3DSA:3.20.20.140 54 414 3.4E-141 T 13-10-2018 RA13_06280 ce70f41238f91e7f6bbcf57d74c00719 447 SUPERFAMILY SSF51556 55 376 1.52E-91 T 13-10-2018 IPR032466 Metal-dependent hydrolase RA13_06280 ce70f41238f91e7f6bbcf57d74c00719 447 TIGRFAM TIGR03178 allantoinase: allantoinase 4 444 3.8E-185 T 13-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 RA13_06280 ce70f41238f91e7f6bbcf57d74c00719 447 Hamap MF_01645 Allantoinase [allB]. 2 446 50.725 T 13-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 RA13_06280 ce70f41238f91e7f6bbcf57d74c00719 447 SUPERFAMILY SSF51338 3 435 7.87E-25 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_06280 ce70f41238f91e7f6bbcf57d74c00719 447 Gene3D G3DSA:2.30.40.10 5 429 3.4E-141 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RA13_06280 ce70f41238f91e7f6bbcf57d74c00719 447 Pfam PF01979 Amidohydrolase family 51 426 2.8E-24 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RA13_06965 d3540d4ddc7c1f7fa87ec4599b7ab9b1 157 Pfam PF14470 Bacterial PH domain 51 151 1.8E-15 T 13-10-2018 IPR039519 YokE-like, PH domain RA13_11605 f853c5f230090fa6dc3ed6286eb83b98 141 Pfam PF01047 MarR family 34 91 4.3E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_11605 f853c5f230090fa6dc3ed6286eb83b98 141 Gene3D G3DSA:1.10.10.10 2 140 4.7E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_11605 f853c5f230090fa6dc3ed6286eb83b98 141 SMART SM00347 27 127 2.6E-31 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_11605 f853c5f230090fa6dc3ed6286eb83b98 141 SUPERFAMILY SSF46785 10 137 1.66E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_11605 f853c5f230090fa6dc3ed6286eb83b98 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 6.3E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_11605 f853c5f230090fa6dc3ed6286eb83b98 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 6.3E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_11605 f853c5f230090fa6dc3ed6286eb83b98 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 6.3E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_06005 ee7292efdc30268c51d8b7770b9581f5 110 Pfam PF07875 Coat F domain 23 84 2.5E-21 T 13-10-2018 IPR012851 Spore coat protein CotF-like RA13_13275 fea538e92bb9bd80261fc3f208cc6ac4 165 SUPERFAMILY SSF160631 15 151 1.31E-20 T 13-10-2018 RA13_13275 fea538e92bb9bd80261fc3f208cc6ac4 165 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 32 134 9.9E-8 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RA13_13275 fea538e92bb9bd80261fc3f208cc6ac4 165 Gene3D G3DSA:3.40.1580.10 30 142 9.6E-7 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily RA13_19235 b073dcb2571e673992109f29d63a4bef 333 SUPERFAMILY SSF81345 3 329 4.84E-82 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_19235 b073dcb2571e673992109f29d63a4bef 333 Gene3D G3DSA:1.10.3470.10 6 332 2.3E-91 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_19235 b073dcb2571e673992109f29d63a4bef 333 Pfam PF01032 FecCD transport family 19 329 3.3E-92 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_17550 88834dcea357091eb59cd09596c4132a 220 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 9 181 1.7E-68 T 13-10-2018 IPR022301 Integral membrane protein YjbE RA13_17550 88834dcea357091eb59cd09596c4132a 220 Pfam PF03741 Integral membrane protein TerC family 12 180 4.0E-46 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RA13_09105 affeaa62047f83b53d82780b391dc0ae 138 Pfam PF03652 Holliday junction resolvase 1 136 1.1E-43 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RA13_09105 affeaa62047f83b53d82780b391dc0ae 138 SMART SM00732 1 103 2.5E-37 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RA13_09105 affeaa62047f83b53d82780b391dc0ae 138 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 4 135 4.8E-59 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RA13_09105 affeaa62047f83b53d82780b391dc0ae 138 Gene3D G3DSA:3.30.420.140 1 138 3.4E-51 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RA13_09105 affeaa62047f83b53d82780b391dc0ae 138 SUPERFAMILY SSF53098 1 137 4.4E-44 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_09105 affeaa62047f83b53d82780b391dc0ae 138 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 138 27.249 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 88 98 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 PIRSF PIRSF500176 3 330 4.2E-72 T 13-10-2018 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 3 329 2.3E-125 T 13-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 Gene3D G3DSA:3.40.50.40 220 330 7.6E-35 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 PIRSF PIRSF001220 1 331 8.5E-82 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 SUPERFAMILY SSF53774 5 329 1.83E-93 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 SMART SM00870 6 325 1.8E-111 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 Gene3D G3DSA:3.40.50.1170 2 219 5.8E-80 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 Pfam PF00710 Asparaginase, N-terminal 7 198 1.9E-55 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 9 17 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 PRINTS PR00139 Asparaginase/glutaminase family signature 87 105 7.3E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 PRINTS PR00139 Asparaginase/glutaminase family signature 267 285 7.3E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_20890 b9658c7fad78fdaa180964341cdb35a2 331 PRINTS PR00139 Asparaginase/glutaminase family signature 7 18 7.3E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RA13_10915 e7b7f6d681edd869f4bdd45edca21ccb 279 Pfam PF01476 LysM domain 231 276 1.2E-9 T 13-10-2018 IPR018392 LysM domain RA13_10915 e7b7f6d681edd869f4bdd45edca21ccb 279 SUPERFAMILY SSF54106 229 276 1.01E-7 T 13-10-2018 RA13_10915 e7b7f6d681edd869f4bdd45edca21ccb 279 SMART SM00257 230 276 1.7E-10 T 13-10-2018 IPR018392 LysM domain RA13_10915 e7b7f6d681edd869f4bdd45edca21ccb 279 Gene3D G3DSA:3.10.350.10 198 279 4.6E-12 T 13-10-2018 IPR036779 LysM domain superfamily RA13_17065 b1cec8666008bc9fd8af6053105fc063 125 Pfam PF08000 Bacterial PH domain 3 123 6.9E-48 T 13-10-2018 IPR012544 Bacterial Pleckstrin homology domain RA13_17065 b1cec8666008bc9fd8af6053105fc063 125 Gene3D G3DSA:2.30.29.50 1 125 5.0E-50 T 13-10-2018 IPR037063 Bacterial Pleckstrin homology domain superfamily RA13_17065 b1cec8666008bc9fd8af6053105fc063 125 SUPERFAMILY SSF50729 6 124 6.76E-40 T 13-10-2018 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 SUPERFAMILY SSF58104 318 653 3.4E-66 T 13-10-2018 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 Gene3D G3DSA:1.10.287.950 370 654 9.9E-61 T 13-10-2018 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 Pfam PF02743 Cache domain 41 259 1.6E-27 T 13-10-2018 IPR033479 Double Cache domain 1 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 Gene3D G3DSA:3.30.450.20 94 182 3.1E-37 T 13-10-2018 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 SMART SM00283 379 640 6.7E-81 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 448 606 1.9E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 Pfam PF00672 HAMP domain 299 345 2.7E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 SUPERFAMILY SSF103190 97 192 2.51E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 SMART SM00304 298 350 2.8E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 Gene3D G3DSA:1.20.1480.50 269 356 2.4E-16 T 13-10-2018 RA13_16220 d9536c6ce1458d02e4ee5c289ec3f8f5 655 Gene3D G3DSA:3.30.450.20 183 266 3.1E-37 T 13-10-2018 RA13_02030 b1f17a21c9676b3e99ebf7d5d74a5eb2 351 SMART SM01329 4 344 5.6E-166 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RA13_02030 b1f17a21c9676b3e99ebf7d5d74a5eb2 351 Gene3D G3DSA:3.40.718.10 1 351 6.4E-126 T 13-10-2018 RA13_02030 b1f17a21c9676b3e99ebf7d5d74a5eb2 351 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 4 347 1.1E-180 T 13-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 RA13_02030 b1f17a21c9676b3e99ebf7d5d74a5eb2 351 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 345 7.8E-83 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RA13_02030 b1f17a21c9676b3e99ebf7d5d74a5eb2 351 SUPERFAMILY SSF53659 3 348 1.34E-111 T 13-10-2018 RA13_02030 b1f17a21c9676b3e99ebf7d5d74a5eb2 351 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 238 257 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RA13_04015 f7f71aa01919c710eaa7615750228e4a 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 2.0E-74 T 13-10-2018 RA13_04015 f7f71aa01919c710eaa7615750228e4a 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 209 7.5E-92 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RA13_04015 f7f71aa01919c710eaa7615750228e4a 209 SUPERFAMILY SSF53271 4 207 8.78E-72 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_04015 f7f71aa01919c710eaa7615750228e4a 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 47.79 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RA13_04015 f7f71aa01919c710eaa7615750228e4a 209 Gene3D G3DSA:3.40.50.2020 1 209 6.4E-82 T 13-10-2018 RA13_06865 fa2aa3f33cf5c03af08c9538c3ca807a 341 Gene3D G3DSA:3.20.20.70 3 341 1.3E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_06865 fa2aa3f33cf5c03af08c9538c3ca807a 341 SUPERFAMILY SSF51412 5 339 4.43E-58 T 13-10-2018 RA13_06865 fa2aa3f33cf5c03af08c9538c3ca807a 341 Pfam PF03060 Nitronate monooxygenase 7 341 1.2E-98 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RA13_06310 81ce50d1ce0cc48e49cc40b0a00443f8 101 Gene3D G3DSA:3.30.1980.10 1 100 4.6E-23 T 13-10-2018 IPR036493 Hypothetical protein YunC superfamily RA13_06310 81ce50d1ce0cc48e49cc40b0a00443f8 101 Pfam PF08827 Domain of unknown function (DUF1805) 37 99 4.5E-25 T 13-10-2018 IPR014931 Protein of unknown function DUF1805 RA13_06310 81ce50d1ce0cc48e49cc40b0a00443f8 101 SUPERFAMILY SSF102891 2 99 2.75E-34 T 13-10-2018 IPR036493 Hypothetical protein YunC superfamily RA13_06655 2a23272fe7d84578c0d8e219b0fdec76 124 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 11 108 9.4E-34 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 RA13_06655 2a23272fe7d84578c0d8e219b0fdec76 124 Pfam PF03334 Na+/H+ antiporter subunit 12 93 1.0E-25 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 RA13_19430 543b7f9d02157d9a546275c386f5f13f 263 SUPERFAMILY SSF88713 32 253 9.14E-67 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_19430 543b7f9d02157d9a546275c386f5f13f 263 Gene3D G3DSA:3.20.20.370 24 263 8.0E-95 T 13-10-2018 RA13_19430 543b7f9d02157d9a546275c386f5f13f 263 TIGRFAM TIGR02884 spore_pdaA: delta-lactam-biosynthetic de-N-acetylase 30 253 1.4E-112 T 13-10-2018 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA RA13_19430 543b7f9d02157d9a546275c386f5f13f 263 Pfam PF01522 Polysaccharide deacetylase 61 184 2.0E-35 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RA13_20785 93ae330f639b5fa1f2ce4563509bb237 112 Pfam PF04237 YjbR 11 104 1.2E-23 T 13-10-2018 IPR007351 Uncharacterised protein YjbR RA13_20785 93ae330f639b5fa1f2ce4563509bb237 112 SUPERFAMILY SSF142906 1 108 1.83E-38 T 13-10-2018 IPR038056 YjbR-like superfamily RA13_20785 93ae330f639b5fa1f2ce4563509bb237 112 Gene3D G3DSA:3.90.1150.30 1 112 8.9E-40 T 13-10-2018 IPR038056 YjbR-like superfamily RA13_12015 7f45279b13aca54ac00c9641627474fb 177 Pfam PF05119 Phage terminase, small subunit 50 161 9.5E-17 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family RA13_12015 7f45279b13aca54ac00c9641627474fb 177 TIGRFAM TIGR01558 sm_term_P27: putative phage terminase, small subunit, P27 family 40 173 1.5E-29 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family RA13_02865 b85faf8999cca97ce112f3089784f7a2 309 SUPERFAMILY SSF103481 195 295 4.58E-11 T 13-10-2018 RA13_02865 b85faf8999cca97ce112f3089784f7a2 309 SUPERFAMILY SSF103481 47 146 1.44E-12 T 13-10-2018 RA13_02865 b85faf8999cca97ce112f3089784f7a2 309 Pfam PF00892 EamA-like transporter family 160 291 4.0E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_02865 b85faf8999cca97ce112f3089784f7a2 309 Pfam PF00892 EamA-like transporter family 15 146 9.4E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_18655 785b79eb61f2ddec6d2cc2ab6b358da3 514 Pfam PF05552 Conserved TM helix 94 139 1.9E-8 T 13-10-2018 IPR008910 Conserved TM helix RA13_18655 785b79eb61f2ddec6d2cc2ab6b358da3 514 Pfam PF05552 Conserved TM helix 3 49 2.5E-12 T 13-10-2018 IPR008910 Conserved TM helix RA13_18655 785b79eb61f2ddec6d2cc2ab6b358da3 514 Pfam PF05552 Conserved TM helix 190 237 1.1E-15 T 13-10-2018 IPR008910 Conserved TM helix RA13_18655 785b79eb61f2ddec6d2cc2ab6b358da3 514 Pfam PF05552 Conserved TM helix 285 332 3.7E-10 T 13-10-2018 IPR008910 Conserved TM helix RA13_01575 fb658faa475495486dff77ac702e7f8c 212 Pfam PF02223 Thymidylate kinase 8 198 1.8E-58 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RA13_01575 fb658faa475495486dff77ac702e7f8c 212 Gene3D G3DSA:3.40.50.300 1 211 5.6E-68 T 13-10-2018 RA13_01575 fb658faa475495486dff77ac702e7f8c 212 SUPERFAMILY SSF52540 1 210 2.29E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01575 fb658faa475495486dff77ac702e7f8c 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 199 3.3E-67 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RA13_01575 fb658faa475495486dff77ac702e7f8c 212 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RA13_01575 fb658faa475495486dff77ac702e7f8c 212 Hamap MF_00165 Thymidylate kinase [tmk]. 4 207 31.416 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RA13_03625 3561f51412c7082288cb4d91c6c3360e 409 Pfam PF07690 Major Facilitator Superfamily 22 304 4.8E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_03625 3561f51412c7082288cb4d91c6c3360e 409 SUPERFAMILY SSF103473 9 396 2.75E-74 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_03625 3561f51412c7082288cb4d91c6c3360e 409 Gene3D G3DSA:1.20.1250.20 210 405 7.3E-28 T 13-10-2018 RA13_03625 3561f51412c7082288cb4d91c6c3360e 409 Gene3D G3DSA:1.20.1250.20 14 192 2.1E-36 T 13-10-2018 RA13_21390 42d7853da8602c375f93f424524b6a62 191 Pfam PF01738 Dienelactone hydrolase family 3 177 7.0E-21 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RA13_21390 42d7853da8602c375f93f424524b6a62 191 SUPERFAMILY SSF53474 4 182 8.32E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21390 42d7853da8602c375f93f424524b6a62 191 Gene3D G3DSA:3.40.50.1820 3 187 2.0E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_16060 8d7b502edde0f8c7dd6f672f71d46fd0 339 Gene3D G3DSA:3.40.50.720 1 250 1.2E-74 T 13-10-2018 RA13_16060 8d7b502edde0f8c7dd6f672f71d46fd0 339 SUPERFAMILY SSF69572 3 328 4.84E-84 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RA13_16060 8d7b502edde0f8c7dd6f672f71d46fd0 339 Pfam PF00899 ThiF family 5 241 3.2E-59 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RA13_12955 0f76b90543cb06c5ddbbc78f26f85967 62 Gene3D G3DSA:1.10.357.10 1 50 4.5E-5 T 13-10-2018 RA13_09875 0420aef160243483b21ef3995a25079f 187 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 2 178 5.6E-56 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RA13_09875 0420aef160243483b21ef3995a25079f 187 SUPERFAMILY SSF100950 2 184 6.0E-52 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_09875 0420aef160243483b21ef3995a25079f 187 Gene3D G3DSA:3.40.50.10420 1 187 4.3E-68 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RA13_09875 0420aef160243483b21ef3995a25079f 187 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 2 178 1.4E-51 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RA13_09875 0420aef160243483b21ef3995a25079f 187 PIRSF PIRSF006806 1 182 5.1E-54 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RA13_20800 ef035af0063b75a6d959abc48c54f9bb 50 Pfam PF02613 Nitrate reductase delta subunit 7 46 9.5E-8 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone RA13_20800 ef035af0063b75a6d959abc48c54f9bb 50 Gene3D G3DSA:1.10.3480.10 2 49 6.1E-9 T 13-10-2018 RA13_20800 ef035af0063b75a6d959abc48c54f9bb 50 SUPERFAMILY SSF89155 12 48 1.44E-10 T 13-10-2018 IPR036411 TorD-like superfamily RA13_04595 b44b86db96ce36940429a44e73ba0431 382 Gene3D G3DSA:3.60.21.10 93 338 9.2E-13 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_04595 b44b86db96ce36940429a44e73ba0431 382 SMART SM00854 60 300 6.1E-95 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA RA13_04595 b44b86db96ce36940429a44e73ba0431 382 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 62 300 2.9E-77 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA RA13_04595 b44b86db96ce36940429a44e73ba0431 382 SUPERFAMILY SSF56300 62 319 7.97E-43 T 13-10-2018 RA13_20230 cd3d1e7ea1b2b15290119798a230d964 400 Pfam PF01882 Protein of unknown function DUF58 205 279 6.3E-20 T 13-10-2018 IPR002881 Domain of unknown function DUF58 RA13_18215 1dd1cfbec9ac47d3a35ce4a9682bac42 325 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 235 323 6.5E-30 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_18215 1dd1cfbec9ac47d3a35ce4a9682bac42 325 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 3 323 4.0E-102 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_18215 1dd1cfbec9ac47d3a35ce4a9682bac42 325 SUPERFAMILY SSF53901 3 323 1.82E-60 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_18215 1dd1cfbec9ac47d3a35ce4a9682bac42 325 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 2 323 61.116 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_18215 1dd1cfbec9ac47d3a35ce4a9682bac42 325 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 185 3.6E-27 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RA13_18215 1dd1cfbec9ac47d3a35ce4a9682bac42 325 Gene3D G3DSA:3.40.47.10 2 325 8.9E-113 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 RA13_00040 44c06a8c5558a4e492c2c9dfa5760b45 363 PIRSF PIRSF026508 1 363 1.1E-129 T 13-10-2018 IPR008863 Toxic anion resistance RA13_00040 44c06a8c5558a4e492c2c9dfa5760b45 363 Pfam PF05816 Toxic anion resistance protein (TelA) 35 359 2.9E-107 T 13-10-2018 IPR008863 Toxic anion resistance RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 Gene3D G3DSA:3.40.50.12090 55 148 1.5E-7 T 13-10-2018 RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 Pfam PF04122 Putative cell wall binding repeat 2 30 116 8.9E-17 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 Pfam PF04122 Putative cell wall binding repeat 2 129 213 2.8E-15 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 Pfam PF04122 Putative cell wall binding repeat 2 223 309 3.5E-7 T 13-10-2018 IPR007253 Putative cell wall binding repeat 2 RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 SUPERFAMILY SSF53187 319 495 3.45E-51 T 13-10-2018 RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 322 492 1.5E-49 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 Gene3D G3DSA:3.40.630.40 318 496 8.6E-58 T 13-10-2018 RA13_04715 7ca1c1f575b2b39ed777b3833dfd68df 496 SMART SM00646 380 492 3.6E-41 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 RA13_18100 a9c2057427d409a0e9380474c571a190 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 259 3.1E-56 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_18100 a9c2057427d409a0e9380474c571a190 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RA13_18100 a9c2057427d409a0e9380474c571a190 261 SUPERFAMILY SSF52096 2 260 4.81E-77 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_18100 a9c2057427d409a0e9380474c571a190 261 Gene3D G3DSA:3.90.226.10 1 260 1.8E-82 T 13-10-2018 RA13_16180 f73c7a78cd87f5a83755bb5a7024526e 154 Pfam PF14177 YkyB-like protein 13 150 2.6E-69 T 13-10-2018 IPR025552 YkyB-like protein RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 336 4.7E-120 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 Pfam PF01628 HrcA protein C terminal domain 104 323 1.9E-66 T 13-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 SUPERFAMILY SSF55781 71 339 2.55E-71 T 13-10-2018 RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 Gene3D G3DSA:3.30.450.40 104 336 6.9E-60 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 PIRSF PIRSF005485 1 341 5.2E-128 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 330 34.112 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 Gene3D G3DSA:3.30.390.60 128 230 6.9E-60 T 13-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 Gene3D G3DSA:1.10.10.10 1 85 3.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09560 d6376ca6ddebdc34a7d3f82498942274 343 SUPERFAMILY SSF46785 1 84 6.58E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_15340 d11b066d355d441561891c776bac3f4d 204 Gene3D G3DSA:3.40.50.300 9 183 7.8E-69 T 13-10-2018 RA13_15340 d11b066d355d441561891c776bac3f4d 204 Pfam PF00625 Guanylate kinase 7 184 5.8E-54 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RA13_15340 d11b066d355d441561891c776bac3f4d 204 SMART SM00072 4 187 1.1E-82 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RA13_15340 d11b066d355d441561891c776bac3f4d 204 Gene3D G3DSA:3.30.63.10 37 96 7.8E-69 T 13-10-2018 RA13_15340 d11b066d355d441561891c776bac3f4d 204 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RA13_15340 d11b066d355d441561891c776bac3f4d 204 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 184 6.0E-74 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RA13_15340 d11b066d355d441561891c776bac3f4d 204 Hamap MF_00328 Guanylate kinase [gmk]. 3 187 36.819 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RA13_15340 d11b066d355d441561891c776bac3f4d 204 SUPERFAMILY SSF52540 3 190 9.18E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08045 9a830b3d194eea42066da1012442850d 227 Gene3D G3DSA:3.60.15.10 1 227 1.1E-72 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_08045 9a830b3d194eea42066da1012442850d 227 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 1 227 37.033 T 13-10-2018 IPR022877 Protein of unknown funcion UPF0173 RA13_08045 9a830b3d194eea42066da1012442850d 227 SMART SM00849 7 193 9.0E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_08045 9a830b3d194eea42066da1012442850d 227 SUPERFAMILY SSF56281 1 208 2.1E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_08045 9a830b3d194eea42066da1012442850d 227 Pfam PF13483 Beta-lactamase superfamily domain 2 193 3.0E-26 T 13-10-2018 RA13_14640 e6192f1b80c51b9e2c614dc5fb9a744d 482 SUPERFAMILY SSF48056 215 405 4.74E-6 T 13-10-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 RA13_00050 523768c0d2921707fc9b9f2f72684b6a 266 SUPERFAMILY SSF56784 3 229 1.42E-20 T 13-10-2018 IPR036412 HAD-like superfamily RA13_00050 523768c0d2921707fc9b9f2f72684b6a 266 Gene3D G3DSA:3.40.50.1000 131 255 6.1E-7 T 13-10-2018 IPR023214 HAD superfamily RA13_00050 523768c0d2921707fc9b9f2f72684b6a 266 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 51 257 1.1E-8 T 13-10-2018 IPR006380 Sucrose-phosphatase-like, N-terminal RA13_00050 523768c0d2921707fc9b9f2f72684b6a 266 Gene3D G3DSA:3.40.50.1000 2 130 9.1E-17 T 13-10-2018 IPR023214 HAD superfamily RA13_00050 523768c0d2921707fc9b9f2f72684b6a 266 PIRSF PIRSF030802 2 239 4.2E-17 T 13-10-2018 IPR024197 Uncharacterised conserved protein UCP030802 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 SUPERFAMILY SSF46785 10 140 2.93E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 Gene3D G3DSA:1.10.287.100 99 148 2.5E-22 T 13-10-2018 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 SMART SM00347 28 128 1.9E-33 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 1.3E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 1.3E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 1.3E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 1.3E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 Gene3D G3DSA:1.20.5.420 3 34 3.7E-19 T 13-10-2018 RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 Gene3D G3DSA:1.10.10.10 35 98 4.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_06000 3bbdd6ff5563980edd6c654699f402ba 148 Pfam PF01047 MarR family 36 92 3.3E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_04860 57c7b9835f32089a7ad84190f5a2bb29 500 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 10 107 2.4E-26 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 RA13_04860 57c7b9835f32089a7ad84190f5a2bb29 500 Pfam PF07196 Flagellin hook IN motif 124 171 7.3E-9 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 RA13_04860 57c7b9835f32089a7ad84190f5a2bb29 500 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 225 487 1.5E-61 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 RA13_18310 db4da220bb54861e0482c2bd38747e1a 113 SUPERFAMILY SSF109915 2 113 4.84E-49 T 13-10-2018 IPR035945 YhaI-like superfamily RA13_18310 db4da220bb54861e0482c2bd38747e1a 113 Gene3D G3DSA:1.10.3750.10 1 113 1.4E-44 T 13-10-2018 IPR035945 YhaI-like superfamily RA13_18310 db4da220bb54861e0482c2bd38747e1a 113 Pfam PF08963 Protein of unknown function (DUF1878) 1 110 1.3E-45 T 13-10-2018 IPR015058 Protein of unknown function DUF1878 RA13_18310 db4da220bb54861e0482c2bd38747e1a 113 ProDom PD073069 YHAI 3D-STRUCTURE 10 113 2.0E-44 T 13-10-2018 IPR015058 Protein of unknown function DUF1878 RA13_05795 1096fd0446d1425b11a6190266135f84 269 SMART SM00382 28 217 5.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05795 1096fd0446d1425b11a6190266135f84 269 Pfam PF00005 ABC transporter 20 167 2.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05795 1096fd0446d1425b11a6190266135f84 269 SUPERFAMILY SSF52540 4 229 1.63E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05795 1096fd0446d1425b11a6190266135f84 269 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_05795 1096fd0446d1425b11a6190266135f84 269 Gene3D G3DSA:3.40.50.300 4 257 2.6E-69 T 13-10-2018 RA13_04535 990fdb48fb86780eb225aa1d29ef0fff 178 Gene3D G3DSA:2.30.30.40 111 178 1.7E-5 T 13-10-2018 RA13_04535 990fdb48fb86780eb225aa1d29ef0fff 178 Pfam PF08239 Bacterial SH3 domain 56 107 5.4E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_04535 990fdb48fb86780eb225aa1d29ef0fff 178 Gene3D G3DSA:2.30.30.40 47 110 9.6E-14 T 13-10-2018 RA13_04535 990fdb48fb86780eb225aa1d29ef0fff 178 SMART SM00287 47 111 2.4E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_04535 990fdb48fb86780eb225aa1d29ef0fff 178 SMART SM00287 118 177 1.3E-6 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type RA13_07940 08c3d589f68fef2ae70150f81a2d9370 269 SUPERFAMILY SSF89550 4 263 4.32E-35 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RA13_07940 08c3d589f68fef2ae70150f81a2d9370 269 Pfam PF02811 PHP domain 5 214 7.1E-13 T 13-10-2018 IPR004013 PHP domain GO:0003824 RA13_07940 08c3d589f68fef2ae70150f81a2d9370 269 Gene3D G3DSA:3.20.20.140 2 269 1.3E-70 T 13-10-2018 RA13_07940 08c3d589f68fef2ae70150f81a2d9370 269 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 4 265 6.3E-89 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 RA13_10645 111a16029a12c17cb3ab57432ae4e154 150 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 24 141 3.3E-42 T 13-10-2018 IPR005562 SpoVA RA13_10645 111a16029a12c17cb3ab57432ae4e154 150 TIGRFAM TIGR02838 spore_V_AC: stage V sporulation protein AC 7 144 5.6E-66 T 13-10-2018 IPR014203 Sporulation stage V, protein AC RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 Gene3D G3DSA:1.10.10.10 1 87 2.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.0E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.0E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.0E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 Gene3D G3DSA:3.40.190.290 90 287 1.8E-33 T 13-10-2018 RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.0E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 Pfam PF03466 LysR substrate binding domain 86 280 2.3E-35 T 13-10-2018 IPR005119 LysR, substrate-binding RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 SUPERFAMILY SSF46785 1 100 8.6E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_07850 2d4343b4713caf5e8a479e99b5461e16 293 SUPERFAMILY SSF53850 88 282 3.72E-30 T 13-10-2018 RA13_04315 5f762d333366d7336ba84d92ef7e74c5 144 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 141 34.761 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RA13_04315 5f762d333366d7336ba84d92ef7e74c5 144 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 138 3.3E-58 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RA13_04315 5f762d333366d7336ba84d92ef7e74c5 144 Gene3D G3DSA:3.10.129.10 1 140 8.0E-60 T 13-10-2018 RA13_04315 5f762d333366d7336ba84d92ef7e74c5 144 SUPERFAMILY SSF54637 1 138 4.14E-49 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_04315 5f762d333366d7336ba84d92ef7e74c5 144 Pfam PF07977 FabA-like domain 11 133 7.5E-37 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RA13_02035 35d1f8bec8d6f156e9e8f9cedb26c14f 301 SUPERFAMILY SSF69318 73 261 1.44E-10 T 13-10-2018 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 274 295 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 457 478 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 320 335 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 379 397 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 162 174 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 120 144 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 194 212 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 344 365 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 407 426 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 46 71 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 223 242 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 PRINTS PR01165 Cytochrome c oxidase subunit I signature 93 116 2.2E-102 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 55 501 9.3E-149 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 Gene3D G3DSA:1.20.210.10 30 562 6.7E-201 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 SUPERFAMILY SSF81442 44 556 1.23E-177 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 276 330 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03445 dbba3afcef468b371eb1fae54acb2866 649 TIGRFAM TIGR02882 QoxB: cytochrome aa3 quinol oxidase, subunit I 4 646 0.0 T 13-10-2018 IPR014233 Quinol oxidase subunit I GO:0005507|GO:0016021|GO:0016682|GO:0020037|GO:0055114 RA13_04235 8c6d30eacb2845dc371e869e50117686 193 SMART SM00014 53 160 7.6E-29 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RA13_04235 8c6d30eacb2845dc371e869e50117686 193 SUPERFAMILY SSF48317 2 169 1.83E-36 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RA13_04235 8c6d30eacb2845dc371e869e50117686 193 Gene3D G3DSA:1.20.144.10 3 173 1.1E-16 T 13-10-2018 RA13_04235 8c6d30eacb2845dc371e869e50117686 193 Pfam PF01569 PAP2 superfamily 54 163 1.8E-18 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RA13_10010 d2220dce96c45d96ae5b2f4529e54a4f 233 TIGRFAM TIGR04087 YqxM_for_SipW: YqxM protein 3 192 3.4E-80 T 13-10-2018 IPR023848 TasA anchoring/assembly protein GO:0062039 RA13_09925 89ae564158ad7840e10064e68184a215 212 SMART SM00849 12 191 1.0E-41 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_09925 89ae564158ad7840e10064e68184a215 212 SUPERFAMILY SSF56281 7 208 1.83E-51 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_09925 89ae564158ad7840e10064e68184a215 212 Gene3D G3DSA:3.60.15.10 2 211 9.3E-63 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_09925 89ae564158ad7840e10064e68184a215 212 Pfam PF00753 Metallo-beta-lactamase superfamily 9 191 1.9E-33 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_18275 075f5d6f9e6f01232b6c962045eca8ef 247 SMART SM00382 28 213 1.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_18275 075f5d6f9e6f01232b6c962045eca8ef 247 Gene3D G3DSA:3.40.50.300 1 245 7.8E-63 T 13-10-2018 RA13_18275 075f5d6f9e6f01232b6c962045eca8ef 247 Pfam PF00005 ABC transporter 19 162 2.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_18275 075f5d6f9e6f01232b6c962045eca8ef 247 SUPERFAMILY SSF52540 3 231 1.63E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20320 ee7af738e768a9f71bc13afead678909 325 Pfam PF13421 SPFH domain-Band 7 family 27 231 2.8E-44 T 13-10-2018 IPR033880 SPFH domain, YdjI-like RA13_20320 ee7af738e768a9f71bc13afead678909 325 Pfam PF13248 zinc-ribbon domain 303 324 6.7E-7 T 13-10-2018 RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 16 435 2.5E-228 T 13-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 SUPERFAMILY SSF53383 33 433 5.38E-131 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 Gene3D G3DSA:3.90.1150.10 13 431 2.5E-160 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 Pfam PF00202 Aminotransferase class-III 33 433 5.3E-124 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 Gene3D G3DSA:3.40.640.10 66 333 2.5E-160 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 PIRSF PIRSF000521 133 435 1.1E-35 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 PIRSF PIRSF000521 11 138 3.6E-7 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_21445 d3ece157770ff810dd4b9bd9249d6b2e 435 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 250 287 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_21890 8431dbcc3cf8c4708ff500ee8d900db0 272 TIGRFAM TIGR00552 nadE: NAD+ synthetase 17 272 1.6E-85 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 RA13_21890 8431dbcc3cf8c4708ff500ee8d900db0 272 Pfam PF02540 NAD synthase 23 263 1.1E-78 T 13-10-2018 IPR022310 NAD/GMP synthase RA13_21890 8431dbcc3cf8c4708ff500ee8d900db0 272 SUPERFAMILY SSF52402 3 271 1.87E-80 T 13-10-2018 RA13_21890 8431dbcc3cf8c4708ff500ee8d900db0 272 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 18 266 48.797 T 13-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 RA13_21890 8431dbcc3cf8c4708ff500ee8d900db0 272 Gene3D G3DSA:3.40.50.620 1 272 7.5E-86 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_00255 25433c193ec049f12aee8da6f7da1494 511 TIGRFAM TIGR03248 galactar-dH20: galactarate dehydratase 12 511 1.2E-279 T 13-10-2018 IPR017654 Galactarate dehydratase GarD-like GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497 RA13_00255 25433c193ec049f12aee8da6f7da1494 511 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 117 508 4.6E-145 T 13-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 RA13_00255 25433c193ec049f12aee8da6f7da1494 511 Gene3D G3DSA:3.90.1210.30 12 89 4.5E-24 T 13-10-2018 RA13_00255 25433c193ec049f12aee8da6f7da1494 511 Pfam PF08666 SAF domain 20 89 2.0E-6 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RA13_00255 25433c193ec049f12aee8da6f7da1494 511 SMART SM00858 20 90 5.3E-5 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RA13_06700 ddc2c9f5e2c7a4ad8559172b6420e29a 319 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 295 4.1E-39 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RA13_17970 06f86c928c0bae7b7e51f8ad9df52e3f 131 ProDom PD031981 GERMINATION SPORE GERPE PE PROBABLE SPORULATION 5 120 4.0E-44 T 13-10-2018 IPR024496 Spore germination protein GerPE RA13_17970 06f86c928c0bae7b7e51f8ad9df52e3f 131 Pfam PF10970 Spore germination protein GerPE 6 124 4.8E-47 T 13-10-2018 IPR024496 Spore germination protein GerPE RA13_04765 de7f31f8586340f1fc79d34bd96c6130 358 Pfam PF00953 Glycosyl transferase family 4 78 233 1.2E-41 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 RA13_04765 de7f31f8586340f1fc79d34bd96c6130 358 ProSitePatterns PS01348 MraY family signature 2. 153 164 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_00550 3428258ea9603f859724b0f43021cf07 205 SUPERFAMILY SSF50475 10 186 6.87E-40 T 13-10-2018 RA13_00550 3428258ea9603f859724b0f43021cf07 205 Gene3D G3DSA:2.30.110.10 1 205 1.1E-61 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RA13_00550 3428258ea9603f859724b0f43021cf07 205 Pfam PF04299 Putative FMN-binding domain 1 161 4.7E-51 T 13-10-2018 IPR007396 Transcriptional regulator PAI 2-type RA13_00550 3428258ea9603f859724b0f43021cf07 205 PIRSF PIRSF010372 1 205 6.8E-71 T 13-10-2018 IPR007396 Transcriptional regulator PAI 2-type RA13_12920 5e9c4f116cc28028e21990f74ef3e504 156 Pfam PF11457 Protein of unknown function (DUF3021) 7 145 2.4E-28 T 13-10-2018 IPR021560 Protein of unknown function DUF3021 RA13_01920 ea14279614c08b06708a9aa628981deb 252 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 243 6.7E-23 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RA13_01920 ea14279614c08b06708a9aa628981deb 252 Gene3D G3DSA:3.60.10.10 1 251 1.5E-99 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RA13_01920 ea14279614c08b06708a9aa628981deb 252 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 250 1.2E-99 T 13-10-2018 RA13_01920 ea14279614c08b06708a9aa628981deb 252 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 251 1.4E-101 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RA13_01920 ea14279614c08b06708a9aa628981deb 252 SUPERFAMILY SSF56219 1 252 2.36E-81 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RA13_17810 8e5547717dee5fca95fabf6d6fbafba3 418 SUPERFAMILY SSF103473 10 402 4.19E-69 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_17810 8e5547717dee5fca95fabf6d6fbafba3 418 Gene3D G3DSA:1.20.1250.20 5 393 7.9E-66 T 13-10-2018 RA13_17810 8e5547717dee5fca95fabf6d6fbafba3 418 PRINTS PR01035 Tetracycline resistance protein signature 21 37 1.2E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_17810 8e5547717dee5fca95fabf6d6fbafba3 418 PRINTS PR01035 Tetracycline resistance protein signature 280 301 1.2E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_17810 8e5547717dee5fca95fabf6d6fbafba3 418 PRINTS PR01035 Tetracycline resistance protein signature 137 159 1.2E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_17810 8e5547717dee5fca95fabf6d6fbafba3 418 PRINTS PR01035 Tetracycline resistance protein signature 107 128 1.2E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_17810 8e5547717dee5fca95fabf6d6fbafba3 418 Pfam PF07690 Major Facilitator Superfamily 21 357 1.9E-58 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 Gene3D G3DSA:1.10.530.10 50 196 4.9E-51 T 13-10-2018 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 Gene3D G3DSA:2.30.30.170 197 277 5.9E-13 T 13-10-2018 IPR038200 GW domain superfamily KEGG: 00511+3.2.1.96|MetaCyc: PWY-7883 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 SUPERFAMILY SSF82057 203 277 2.53E-15 T 13-10-2018 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 58 192 1.0E-24 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 PRINTS PR01002 Flagellar protein FlgJ signature 154 173 1.2E-9 T 13-10-2018 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 PRINTS PR01002 Flagellar protein FlgJ signature 69 87 1.2E-9 T 13-10-2018 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 PRINTS PR01002 Flagellar protein FlgJ signature 45 68 1.2E-9 T 13-10-2018 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 PRINTS PR01002 Flagellar protein FlgJ signature 174 192 1.2E-9 T 13-10-2018 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 SMART SM00047 39 197 4.8E-70 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 Pfam PF13457 SH3-like domain 204 275 2.0E-9 T 13-10-2018 IPR025987 GW domain KEGG: 00511+3.2.1.96|MetaCyc: PWY-7883 RA13_07025 c11db3694376dbb249f74f80ae8689e2 281 Gene3D G3DSA:4.10.80.30 101 126 4.9E-51 T 13-10-2018 RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 Gene3D G3DSA:1.10.10.200 2 79 3.3E-24 T 13-10-2018 IPR017856 Integrase-like, N-terminal RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 SUPERFAMILY SSF75625 1 238 3.01E-80 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 Pfam PF01709 Transcriptional regulator 4 235 7.0E-81 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 Gene3D G3DSA:3.30.70.980 83 234 5.3E-45 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 237 31.448 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 Gene3D G3DSA:3.30.70.980 131 201 5.3E-45 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 Hamap MF_00918 Probable transcriptional regulatory protein YeeN [yeeN]. 1 238 56.917 T 13-10-2018 IPR026562 Probable transcriptional regulatory protein YeeN RA13_19955 6546ddcfeed1b2fd8910e3db92b73b4b 239 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 235 1.4E-70 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_00270 ded844445417ca3f611bba328ed08526 457 Pfam PF07690 Major Facilitator Superfamily 324 441 4.6E-9 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_00270 ded844445417ca3f611bba328ed08526 457 Pfam PF07690 Major Facilitator Superfamily 25 318 5.9E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_00270 ded844445417ca3f611bba328ed08526 457 Gene3D G3DSA:1.20.1250.20 241 445 1.1E-33 T 13-10-2018 RA13_00270 ded844445417ca3f611bba328ed08526 457 Gene3D G3DSA:1.20.1250.20 12 214 2.4E-45 T 13-10-2018 RA13_00270 ded844445417ca3f611bba328ed08526 457 PIRSF PIRSF002808 3 452 7.0E-47 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RA13_00270 ded844445417ca3f611bba328ed08526 457 SUPERFAMILY SSF103473 10 444 1.83E-85 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_00270 ded844445417ca3f611bba328ed08526 457 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 27 436 3.8E-158 T 13-10-2018 RA13_19230 2a069ef286d62d221d0ee12d07c1b74a 337 Pfam PF01032 FecCD transport family 19 333 5.2E-90 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_19230 2a069ef286d62d221d0ee12d07c1b74a 337 SUPERFAMILY SSF81345 6 333 1.31E-81 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_19230 2a069ef286d62d221d0ee12d07c1b74a 337 Gene3D G3DSA:1.10.3470.10 4 337 1.2E-94 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_20035 52fcdf82dc516c84723409359835c98f 285 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 2.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_20035 52fcdf82dc516c84723409359835c98f 285 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 2.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_20035 52fcdf82dc516c84723409359835c98f 285 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 51 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RA13_20035 52fcdf82dc516c84723409359835c98f 285 SUPERFAMILY SSF46689 3 69 1.23E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_20035 52fcdf82dc516c84723409359835c98f 285 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 1.1E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_20035 52fcdf82dc516c84723409359835c98f 285 Gene3D G3DSA:1.10.357.10 1 189 1.1E-29 T 13-10-2018 RA13_07460 e77ca622a719ece0987068dfe1749c4b 468 PIRSF PIRSF006060 1 465 1.1E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_07460 e77ca622a719ece0987068dfe1749c4b 468 Gene3D G3DSA:1.20.1740.10 10 466 1.1E-64 T 13-10-2018 RA13_07460 e77ca622a719ece0987068dfe1749c4b 468 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RA13_07460 e77ca622a719ece0987068dfe1749c4b 468 Pfam PF00324 Amino acid permease 18 447 9.0E-120 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_09270 bf54d3c05cdeab5af9d4c6062c6d91ce 342 SUPERFAMILY SSF48179 180 321 1.29E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_09270 bf54d3c05cdeab5af9d4c6062c6d91ce 342 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 181 320 1.8E-28 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain RA13_09270 bf54d3c05cdeab5af9d4c6062c6d91ce 342 SUPERFAMILY SSF51735 1 180 2.27E-16 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_09270 bf54d3c05cdeab5af9d4c6062c6d91ce 342 Gene3D G3DSA:3.40.50.720 1 178 2.0E-38 T 13-10-2018 RA13_09270 bf54d3c05cdeab5af9d4c6062c6d91ce 342 Gene3D G3DSA:1.10.1040.10 182 325 1.0E-31 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RA13_09270 bf54d3c05cdeab5af9d4c6062c6d91ce 342 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 140 1.6E-26 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain RA13_09270 bf54d3c05cdeab5af9d4c6062c6d91ce 342 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 322 2.9E-55 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 RA13_05585 bf4196bed7e91d791fbe42c9f769686c 291 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 21 286 2.3E-59 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RA13_05585 bf4196bed7e91d791fbe42c9f769686c 291 Gene3D G3DSA:3.40.190.10 23 285 1.7E-97 T 13-10-2018 RA13_05585 bf4196bed7e91d791fbe42c9f769686c 291 SUPERFAMILY SSF53850 20 289 8.83E-67 T 13-10-2018 RA13_05585 bf4196bed7e91d791fbe42c9f769686c 291 Gene3D G3DSA:3.40.190.120 125 229 1.7E-97 T 13-10-2018 RA13_15840 35f017d874a4c6e7b66d7faa18909539 143 SUPERFAMILY SSF55729 29 128 2.85E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_15840 35f017d874a4c6e7b66d7faa18909539 143 Gene3D G3DSA:3.40.630.30 3 137 2.3E-8 T 13-10-2018 RA13_15840 35f017d874a4c6e7b66d7faa18909539 143 Pfam PF00583 Acetyltransferase (GNAT) family 12 117 6.8E-5 T 13-10-2018 IPR000182 GNAT domain RA13_16720 004b828d0bca043799105317d5b6c4d3 171 SUPERFAMILY SSF55729 2 156 2.24E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_16720 004b828d0bca043799105317d5b6c4d3 171 Pfam PF13302 Acetyltransferase (GNAT) domain 11 149 2.5E-34 T 13-10-2018 IPR000182 GNAT domain RA13_16720 004b828d0bca043799105317d5b6c4d3 171 Gene3D G3DSA:3.40.630.30 2 170 1.6E-42 T 13-10-2018 RA13_09455 d3e92ada9100b0e0bac7c82b935a1423 46 Pfam PF08970 Sporulation inhibitor A 1 44 2.6E-22 T 13-10-2018 IPR015064 Sporulation inhibitor A RA13_09455 d3e92ada9100b0e0bac7c82b935a1423 46 Gene3D G3DSA:1.10.287.1100 4 37 1.8E-20 T 13-10-2018 IPR036916 Sporulation inhibitor A superfamily RA13_09455 d3e92ada9100b0e0bac7c82b935a1423 46 SUPERFAMILY SSF100985 1 45 2.88E-17 T 13-10-2018 IPR036916 Sporulation inhibitor A superfamily RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 SUPERFAMILY SSF52540 201 364 1.94E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 Gene3D G3DSA:3.40.50.300 202 367 1.2E-30 T 13-10-2018 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 358 7.6E-144 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 Pfam PF01926 50S ribosome-binding GTPase 203 321 1.0E-18 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 Hamap MF_00900 GTPase HflX [hflX]. 30 389 47.112 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 Pfam PF13167 GTP-binding GTPase N-terminal 28 115 1.9E-33 T 13-10-2018 IPR025121 GTPase HflX, N-terminal RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 203 223 1.1E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 270 288 1.1E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 PIRSF PIRSF006809 1 419 2.2E-144 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 Gene3D G3DSA:3.40.50.11060 20 141 1.6E-41 T 13-10-2018 RA13_13500 f59a2db9d298bc44eb3f057a83c10ab5 420 Pfam PF16360 GTP-binding GTPase Middle Region 117 195 1.4E-30 T 13-10-2018 IPR032305 GTP-binding protein, middle domain RA13_11400 5fd15b791421a90f0be0d12670d52976 330 TIGRFAM TIGR00793 kdgT: 2-keto-3-deoxygluconate transporter 1 314 1.7E-170 T 13-10-2018 IPR018395 2-keto-3-deoxygluconate permease, subgroup GO:0008643|GO:0015649|GO:0016021|GO:0046411 RA13_11400 5fd15b791421a90f0be0d12670d52976 330 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 14 316 3.0E-116 T 13-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 RA13_11400 5fd15b791421a90f0be0d12670d52976 330 Pfam PF03812 2-keto-3-deoxygluconate permease 3 312 2.7E-113 T 13-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 RA13_07320 82329660acd57929174a44cb23e4b3a5 371 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 10 334 7.3E-158 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 RA13_07320 82329660acd57929174a44cb23e4b3a5 371 Gene3D G3DSA:3.30.390.10 9 360 1.2E-139 T 13-10-2018 IPR029017 Enolase-like, N-terminal RA13_07320 82329660acd57929174a44cb23e4b3a5 371 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 2 360 46.512 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 RA13_07320 82329660acd57929174a44cb23e4b3a5 371 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7 126 1.9E-16 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RA13_07320 82329660acd57929174a44cb23e4b3a5 371 SUPERFAMILY SSF51604 125 360 1.7E-71 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_07320 82329660acd57929174a44cb23e4b3a5 371 Pfam PF13378 Enolase C-terminal domain-like 146 355 7.5E-48 T 13-10-2018 IPR029065 Enolase C-terminal domain-like RA13_07320 82329660acd57929174a44cb23e4b3a5 371 SUPERFAMILY SSF54826 2 127 1.25E-34 T 13-10-2018 RA13_07320 82329660acd57929174a44cb23e4b3a5 371 SMART SM00922 143 235 4.8E-22 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RA13_07320 82329660acd57929174a44cb23e4b3a5 371 Gene3D G3DSA:3.20.20.120 119 347 1.2E-139 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RA13_14845 9cfb892132f8db945826cf20caa161ec 117 SUPERFAMILY SSF89919 2 110 5.63E-37 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily RA13_14845 9cfb892132f8db945826cf20caa161ec 117 Gene3D G3DSA:3.30.300.20 1 116 1.0E-40 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_14845 9cfb892132f8db945826cf20caa161ec 117 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 107 29.753 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RA13_14845 9cfb892132f8db945826cf20caa161ec 117 Pfam PF02033 Ribosome-binding factor A 4 107 2.2E-35 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RA13_14845 9cfb892132f8db945826cf20caa161ec 117 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 3 112 1.3E-43 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RA13_14845 9cfb892132f8db945826cf20caa161ec 117 ProSitePatterns PS01319 Ribosome-binding factor A signature. 73 94 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 RA13_14845 9cfb892132f8db945826cf20caa161ec 117 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 7 94 3.0E-42 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RA13_03930 a0405f249946d60486c72d47427848e2 198 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 174 187 - T 13-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RA13_03930 a0405f249946d60486c72d47427848e2 198 SUPERFAMILY SSF52540 8 142 7.44E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03930 a0405f249946d60486c72d47427848e2 198 SUPERFAMILY SSF57716 142 191 2.28E-16 T 13-10-2018 RA13_03930 a0405f249946d60486c72d47427848e2 198 Hamap MF_00124 Thymidine kinase [tdk]. 7 190 37.58 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RA13_03930 a0405f249946d60486c72d47427848e2 198 Gene3D G3DSA:3.30.60.20 142 194 1.5E-27 T 13-10-2018 RA13_03930 a0405f249946d60486c72d47427848e2 198 Gene3D G3DSA:3.40.50.300 1 141 6.2E-58 T 13-10-2018 RA13_03930 a0405f249946d60486c72d47427848e2 198 PIRSF PIRSF035805 5 198 1.9E-65 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RA13_03930 a0405f249946d60486c72d47427848e2 198 Pfam PF00265 Thymidine kinase 8 187 2.0E-61 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 RA13_03470 070d4470e3e5048bd4ab9884a3b0f92d 394 Pfam PF01098 Cell cycle protein 9 384 1.2E-105 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_03470 070d4470e3e5048bd4ab9884a3b0f92d 394 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 342 366 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_03320 dac3b2ba0847ea14c3e75abd66a7964f 395 Gene3D G3DSA:2.30.130.10 1 70 1.7E-27 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 RA13_03320 dac3b2ba0847ea14c3e75abd66a7964f 395 SMART SM00359 2 87 9.6E-12 T 13-10-2018 IPR002478 PUA domain GO:0003723 RA13_03320 dac3b2ba0847ea14c3e75abd66a7964f 395 SUPERFAMILY SSF53335 79 392 3.26E-66 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_03320 dac3b2ba0847ea14c3e75abd66a7964f 395 Gene3D G3DSA:3.40.50.150 180 395 1.7E-59 T 13-10-2018 RA13_03320 dac3b2ba0847ea14c3e75abd66a7964f 395 Gene3D G3DSA:3.30.750.80 72 178 2.1E-34 T 13-10-2018 RA13_03320 dac3b2ba0847ea14c3e75abd66a7964f 395 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 102 375 4.3E-35 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 RA13_03320 dac3b2ba0847ea14c3e75abd66a7964f 395 SUPERFAMILY SSF88697 1 70 8.08E-20 T 13-10-2018 IPR015947 PUA-like superfamily RA13_10050 fa50e82a122bd8ed4f19672a832444aa 448 Pfam PF02347 Glycine cleavage system P-protein 3 442 3.7E-171 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 RA13_10050 fa50e82a122bd8ed4f19672a832444aa 448 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 3 446 49.789 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 RA13_10050 fa50e82a122bd8ed4f19672a832444aa 448 Gene3D G3DSA:3.90.1150.10 73 443 1.2E-164 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_10050 fa50e82a122bd8ed4f19672a832444aa 448 SUPERFAMILY SSF53383 3 443 1.08E-121 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_10050 fa50e82a122bd8ed4f19672a832444aa 448 PIRSF PIRSF006815 3 447 1.8E-189 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 RA13_10050 fa50e82a122bd8ed4f19672a832444aa 448 Gene3D G3DSA:3.40.640.10 84 349 1.2E-164 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_17110 9d9d3e421ce42f4573a744e92001e275 462 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 24 457 1.2E-146 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 RA13_17110 9d9d3e421ce42f4573a744e92001e275 462 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 75 102 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 RA13_17110 9d9d3e421ce42f4573a744e92001e275 462 Gene3D G3DSA:1.20.1250.20 25 441 2.0E-24 T 13-10-2018 RA13_17110 9d9d3e421ce42f4573a744e92001e275 462 SUPERFAMILY SSF103473 25 450 2.62E-38 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_17110 9d9d3e421ce42f4573a744e92001e275 462 Pfam PF13347 MFS/sugar transport protein 26 446 2.7E-93 T 13-10-2018 RA13_15645 56122ff5e76c942d5e378262e05d39ff 59 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 2.6E-26 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15645 56122ff5e76c942d5e378262e05d39ff 59 Pfam PF01783 Ribosomal L32p protein family 2 54 3.4E-25 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15645 56122ff5e76c942d5e378262e05d39ff 59 SUPERFAMILY SSF57829 1 54 3.54E-21 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RA13_15645 56122ff5e76c942d5e378262e05d39ff 59 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 19.34 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_20500 5458ae80c0ec595abeeb024d2c8eeac4 269 Gene3D G3DSA:1.10.10.10 1 101 5.5E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20500 5458ae80c0ec595abeeb024d2c8eeac4 269 SUPERFAMILY SSF46785 2 92 1.96E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_20500 5458ae80c0ec595abeeb024d2c8eeac4 269 Pfam PF01978 Sugar-specific transcriptional regulator TrmB 8 74 4.7E-22 T 13-10-2018 IPR002831 Transcription regulator TrmB, N-terminal RA13_13545 c97dda0dd8837f597881fa5a935ee4f1 72 Gene3D G3DSA:1.10.8.910 13 72 3.8E-31 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily RA13_13545 c97dda0dd8837f597881fa5a935ee4f1 72 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 46 60 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_13545 c97dda0dd8837f597881fa5a935ee4f1 72 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 13 67 3.6E-21 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 RA13_13545 c97dda0dd8837f597881fa5a935ee4f1 72 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 28 37 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_16825 534c8317cfbf2db8c57645bcad1fb73c 322 SUPERFAMILY SSF53448 6 256 9.09E-35 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_16825 534c8317cfbf2db8c57645bcad1fb73c 322 Gene3D G3DSA:3.90.550.10 2 201 1.8E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_16825 534c8317cfbf2db8c57645bcad1fb73c 322 Pfam PF00535 Glycosyl transferase family 2 8 170 2.6E-37 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_04900 85f7f5b9204dcd205125c4fb3217b157 112 Gene3D G3DSA:1.10.760.10 42 112 1.9E-28 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RA13_04900 85f7f5b9204dcd205125c4fb3217b157 112 PIRSF PIRSF000025 1 112 7.6E-40 T 13-10-2018 IPR012218 Cytochrome c, Bacillus subtilis c550-related GO:0005506|GO:0009055|GO:0016021|GO:0020037 RA13_04900 85f7f5b9204dcd205125c4fb3217b157 112 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 40 108 1.4E-13 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_04900 85f7f5b9204dcd205125c4fb3217b157 112 SUPERFAMILY SSF46626 2 109 1.31E-19 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RA13_18555 280e74b8d432d0264f0cdf0d031ae1d4 199 SUPERFAMILY SSF69593 17 193 4.05E-37 T 13-10-2018 RA13_18555 280e74b8d432d0264f0cdf0d031ae1d4 199 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 19 141 7.4E-37 T 13-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 RA13_18555 280e74b8d432d0264f0cdf0d031ae1d4 199 Pfam PF01553 Acyltransferase 19 142 4.1E-24 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RA13_18555 280e74b8d432d0264f0cdf0d031ae1d4 199 SMART SM00563 33 144 1.5E-28 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 5.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 5.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 5.7E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 SUPERFAMILY SSF51735 7 259 1.39E-71 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 Pfam PF00106 short chain dehydrogenase 8 195 5.1E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05855 17b39e3d23ca6204bc06f25abefdf820 263 Gene3D G3DSA:3.40.50.720 2 260 2.7E-73 T 13-10-2018 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 Gene3D G3DSA:3.40.640.10 106 346 9.3E-157 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 SUPERFAMILY SSF53383 8 471 3.58E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 100 118 1.0E-18 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 12 31 1.0E-18 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 384 403 1.0E-18 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 79 98 1.0E-18 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 119 138 1.0E-18 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 341 356 1.0E-18 T 13-10-2018 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 Gene3D G3DSA:3.90.1150.170 32 465 9.3E-157 T 13-10-2018 RA13_00565 8c88f68155cdcdb44f00b4fc11acb96e 480 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 45 402 4.5E-71 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 Gene3D G3DSA:1.10.10.10 146 265 2.3E-55 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10220 db12a15806ed4a53c015c00b22db6997 265 Gene3D G3DSA:3.40.50.2300 1 134 9.4E-33 T 13-10-2018 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 SMART SM00448 4 119 2.3E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 Pfam PF08769 Sporulation initiation factor Spo0A C terminal 155 258 7.0E-45 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 ProDom PD010908 TRANSCRIPTION SPORULATION TWO-COMPONENT DNA-BINDING PHOSPHORYLATION SENSORY REGULATION TRANSDUCTION METAL-BINDING CALCIUM 154 264 4.0E-59 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 PIRSF PIRSF002937 1 265 1.1E-135 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 SUPERFAMILY SSF46894 149 263 4.08E-48 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 TIGRFAM TIGR02875 spore_0_A: sporulation transcription factor Spo0A 2 265 2.9E-130 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 RA13_10220 db12a15806ed4a53c015c00b22db6997 265 SUPERFAMILY SSF52172 2 126 1.05E-32 T 13-10-2018 IPR011006 CheY-like superfamily RA13_10220 db12a15806ed4a53c015c00b22db6997 265 Pfam PF00072 Response regulator receiver domain 6 119 1.1E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 TIGRFAM TIGR01227 hutG: formimidoylglutamase 3 311 4.9E-119 T 13-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 SUPERFAMILY SSF52768 36 312 1.42E-69 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 ProSitePatterns PS01053 Arginase family signature. 240 261 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 Gene3D G3DSA:3.40.800.10 23 316 4.9E-100 T 13-10-2018 RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 PRINTS PR00116 Arginase signature 123 138 7.4E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 PRINTS PR00116 Arginase signature 237 266 7.4E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 Pfam PF00491 Arginase family 38 309 2.4E-64 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_02720 69c1c5cc1719beefaefee7d1664d327b 324 PIRSF PIRSF036979 16 316 1.3E-52 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 RA13_09180 b98647e4be5a7548bcd8b705429ddc04 76 Pfam PF14143 YrhC-like protein 4 74 3.9E-28 T 13-10-2018 IPR025418 YrhC-like protein RA13_09180 b98647e4be5a7548bcd8b705429ddc04 76 ProDom PD057834 YRHC TRANSMEMBRANE MEMBRANE 1 76 4.0E-32 T 13-10-2018 IPR025418 YrhC-like protein RA13_06825 d300c4d2b96b16a0277fec9ea476d217 134 SUPERFAMILY SSF160755 1 132 3.01E-36 T 13-10-2018 IPR036491 YugN-like superfamily RA13_06825 d300c4d2b96b16a0277fec9ea476d217 134 Gene3D G3DSA:3.30.310.100 3 117 1.7E-30 T 13-10-2018 IPR036491 YugN-like superfamily RA13_06825 d300c4d2b96b16a0277fec9ea476d217 134 Pfam PF08868 YugN-like family 4 132 4.9E-51 T 13-10-2018 IPR014967 Uncharacterised protein family, YugN-like RA13_15010 ad96bd313f48a51f9575ae2262051f2c 220 Pfam PF04347 Flagellar biosynthesis protein, FliO 103 201 5.8E-13 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 RA13_18155 b971f16a83dc4cd1353568b69a51289f 149 Pfam PF00583 Acetyltransferase (GNAT) family 27 133 7.9E-19 T 13-10-2018 IPR000182 GNAT domain RA13_18155 b971f16a83dc4cd1353568b69a51289f 149 SUPERFAMILY SSF55729 1 143 1.01E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_18155 b971f16a83dc4cd1353568b69a51289f 149 Gene3D G3DSA:3.40.630.30 2 139 5.2E-38 T 13-10-2018 RA13_06830 10008ec251e56d8e7148c378416d192b 328 Gene3D G3DSA:1.10.287.70 6 100 7.1E-21 T 13-10-2018 RA13_06830 10008ec251e56d8e7148c378416d192b 328 Pfam PF02254 TrkA-N domain 117 237 6.1E-19 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RA13_06830 10008ec251e56d8e7148c378416d192b 328 Pfam PF07885 Ion channel 22 96 4.4E-16 T 13-10-2018 IPR013099 Potassium channel domain RA13_06830 10008ec251e56d8e7148c378416d192b 328 SUPERFAMILY SSF81324 9 134 4.58E-27 T 13-10-2018 RA13_06830 10008ec251e56d8e7148c378416d192b 328 SUPERFAMILY SSF51735 115 250 1.48E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_06830 10008ec251e56d8e7148c378416d192b 328 Gene3D G3DSA:3.40.50.720 110 252 3.1E-27 T 13-10-2018 RA13_11470 2a4967739a08d9f01d8e48fa88aeec23 223 Pfam PF13456 Reverse transcriptase-like 79 204 6.6E-15 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RA13_11470 2a4967739a08d9f01d8e48fa88aeec23 223 Gene3D G3DSA:3.30.420.10 73 211 1.1E-27 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RA13_11470 2a4967739a08d9f01d8e48fa88aeec23 223 SUPERFAMILY SSF53098 74 209 3.67E-20 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_17460 10eeda1ce6817641258735ebb3273b23 369 Pfam PF01266 FAD dependent oxidoreductase 6 345 6.4E-66 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RA13_17460 10eeda1ce6817641258735ebb3273b23 369 SUPERFAMILY SSF54373 220 305 2.22E-19 T 13-10-2018 RA13_17460 10eeda1ce6817641258735ebb3273b23 369 Gene3D G3DSA:3.50.50.60 8 346 1.2E-132 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_17460 10eeda1ce6817641258735ebb3273b23 369 Gene3D G3DSA:3.30.9.10 92 305 1.2E-132 T 13-10-2018 RA13_17460 10eeda1ce6817641258735ebb3273b23 369 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 8 349 5.3E-115 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 RA13_17460 10eeda1ce6817641258735ebb3273b23 369 SUPERFAMILY SSF51905 4 364 2.17E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_05695 d8f67934c13a9ebde21f1cc46c069ac4 773 Gene3D G3DSA:3.40.50.300 202 334 9.8E-10 T 13-10-2018 RA13_05695 d8f67934c13a9ebde21f1cc46c069ac4 773 Gene3D G3DSA:3.40.50.300 428 602 2.6E-9 T 13-10-2018 RA13_05695 d8f67934c13a9ebde21f1cc46c069ac4 773 Gene3D G3DSA:3.40.50.300 604 773 8.3E-59 T 13-10-2018 RA13_05695 d8f67934c13a9ebde21f1cc46c069ac4 773 Pfam PF13538 UvrD-like helicase C-terminal domain 704 752 5.8E-10 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain RA13_05695 d8f67934c13a9ebde21f1cc46c069ac4 773 Pfam PF13245 AAA domain 217 580 1.2E-10 T 13-10-2018 RA13_05695 d8f67934c13a9ebde21f1cc46c069ac4 773 SUPERFAMILY SSF52540 204 771 2.03E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_08290 a2af20f6362feb0200b45dc88465078b 361 SUPERFAMILY SSF53187 6 358 1.61E-72 T 13-10-2018 RA13_08290 a2af20f6362feb0200b45dc88465078b 361 Pfam PF05343 M42 glutamyl aminopeptidase 48 342 6.0E-117 T 13-10-2018 IPR008007 Peptidase M42 RA13_08290 a2af20f6362feb0200b45dc88465078b 361 SUPERFAMILY SSF101821 73 182 6.26E-34 T 13-10-2018 RA13_08290 a2af20f6362feb0200b45dc88465078b 361 PIRSF PIRSF001123 4 361 1.3E-149 T 13-10-2018 IPR008007 Peptidase M42 RA13_08290 a2af20f6362feb0200b45dc88465078b 361 Gene3D G3DSA:3.40.630.10 12 345 1.2E-139 T 13-10-2018 RA13_08290 a2af20f6362feb0200b45dc88465078b 361 Gene3D G3DSA:2.40.30.40 77 164 1.2E-139 T 13-10-2018 IPR023367 Peptidase M42, domain 2 RA13_19960 9edca21742d7655c47a52b0d36e5c736 376 SMART SM00028 139 172 23.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19960 9edca21742d7655c47a52b0d36e5c736 376 SMART SM00028 220 253 3.9E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19960 9edca21742d7655c47a52b0d36e5c736 376 SMART SM00028 180 213 30.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19960 9edca21742d7655c47a52b0d36e5c736 376 SMART SM00028 99 132 470.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_19960 9edca21742d7655c47a52b0d36e5c736 376 Gene3D G3DSA:1.25.40.10 1 376 1.6E-125 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_19960 9edca21742d7655c47a52b0d36e5c736 376 Pfam PF13424 Tetratricopeptide repeat 187 250 5.5E-10 T 13-10-2018 RA13_19960 9edca21742d7655c47a52b0d36e5c736 376 SUPERFAMILY SSF48452 132 278 5.06E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_19145 f74acf1228f01255c8523b2949f27808 364 SUPERFAMILY SSF55811 229 359 1.28E-22 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RA13_19145 f74acf1228f01255c8523b2949f27808 364 SUPERFAMILY SSF48150 13 231 9.89E-72 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RA13_19145 f74acf1228f01255c8523b2949f27808 364 Gene3D G3DSA:1.10.340.30 30 141 1.5E-87 T 13-10-2018 RA13_19145 f74acf1228f01255c8523b2949f27808 364 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 16 282 2.5E-117 T 13-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 RA13_19145 f74acf1228f01255c8523b2949f27808 364 Pfam PF14815 NUDIX domain 244 357 1.1E-22 T 13-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RA13_19145 f74acf1228f01255c8523b2949f27808 364 SMART SM00525 200 220 0.0012 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RA13_19145 f74acf1228f01255c8523b2949f27808 364 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 44 174 2.6E-21 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RA13_19145 f74acf1228f01255c8523b2949f27808 364 Gene3D G3DSA:1.10.1670.10 19 222 1.5E-87 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RA13_19145 f74acf1228f01255c8523b2949f27808 364 Gene3D G3DSA:3.90.79.10 240 363 9.7E-26 T 13-10-2018 RA13_19145 f74acf1228f01255c8523b2949f27808 364 SMART SM00478 48 199 2.3E-54 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RA13_02970 94cf4ee31f4f6351f291846ee172a539 225 ProDom PD114929 PRECURSOR YXIP SIGNAL 41 217 2.0E-49 T 13-10-2018 RA13_06110 b672e3ec60ce09f339615624cc4917b6 465 SUPERFAMILY SSF101960 32 462 1.44E-139 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily RA13_06110 b672e3ec60ce09f339615624cc4917b6 465 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 10 456 1.3E-231 T 13-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 RA13_06110 b672e3ec60ce09f339615624cc4917b6 465 Pfam PF01458 Uncharacterized protein family (UPF0051) 211 436 3.5E-74 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 RA13_00330 e90baec37fe919f5d1076e99bc2f48cc 251 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 120 138 - T 13-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RA13_00330 e90baec37fe919f5d1076e99bc2f48cc 251 Gene3D G3DSA:3.40.50.1360 1 250 4.1E-102 T 13-10-2018 RA13_00330 e90baec37fe919f5d1076e99bc2f48cc 251 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 242 43.235 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RA13_00330 e90baec37fe919f5d1076e99bc2f48cc 251 SUPERFAMILY SSF100950 1 248 1.31E-93 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_00330 e90baec37fe919f5d1076e99bc2f48cc 251 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 247 1.2E-108 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RA13_00330 e90baec37fe919f5d1076e99bc2f48cc 251 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 11 230 2.9E-24 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 RA13_04335 f7fea82307e5b52409dbce3570d2267e 113 Gene3D G3DSA:2.40.50.140 1 112 4.6E-46 T 13-10-2018 RA13_04335 f7fea82307e5b52409dbce3570d2267e 113 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 106 3.7E-37 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RA13_04335 f7fea82307e5b52409dbce3570d2267e 113 Hamap MF_00984 Single-stranded DNA-binding protein. 2 107 33.117 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RA13_04335 f7fea82307e5b52409dbce3570d2267e 113 SUPERFAMILY SSF50249 1 108 1.23E-40 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_04335 f7fea82307e5b52409dbce3570d2267e 113 PIRSF PIRSF002070 1 111 1.3E-32 T 13-10-2018 RA13_04335 f7fea82307e5b52409dbce3570d2267e 113 Pfam PF00436 Single-strand binding protein family 2 103 3.6E-34 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RA13_05485 9e7c637b36a54d8e6f6ffbe74eba3722 376 Gene3D G3DSA:3.40.640.10 1 242 5.8E-101 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_05485 9e7c637b36a54d8e6f6ffbe74eba3722 376 Gene3D G3DSA:3.90.1150.10 245 371 2.9E-34 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_05485 9e7c637b36a54d8e6f6ffbe74eba3722 376 SUPERFAMILY SSF53383 2 368 2.45E-119 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_05485 9e7c637b36a54d8e6f6ffbe74eba3722 376 PIRSF PIRSF000390 1 372 3.7E-112 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_05485 9e7c637b36a54d8e6f6ffbe74eba3722 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 2 364 4.1E-129 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_18830 f6336c5ae7b75734318402ef366c0597 123 SMART SM00345 15 74 1.5E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_18830 f6336c5ae7b75734318402ef366c0597 123 SUPERFAMILY SSF46785 4 88 5.39E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_18830 f6336c5ae7b75734318402ef366c0597 123 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 8.9E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_18830 f6336c5ae7b75734318402ef366c0597 123 Gene3D G3DSA:1.10.10.10 8 122 1.5E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16885 a60a6bcf9de8c55f8f106468f1f4fb2b 54 Pfam PF09693 Phage uncharacterised protein (Phage_XkdX) 24 52 6.5E-9 T 13-10-2018 IPR010022 Protein of unknown function XkdX RA13_16885 a60a6bcf9de8c55f8f106468f1f4fb2b 54 TIGRFAM TIGR01669 phage_XkdX: phage uncharacterized protein, XkdX family 11 54 5.4E-16 T 13-10-2018 IPR010022 Protein of unknown function XkdX RA13_18570 ec71d2b931115fe333fe804a750fc84d 358 Pfam PF13791 Sigma factor regulator C-terminal 206 352 6.5E-39 T 13-10-2018 IPR025672 Sigma factor regulator C-terminal domain RA13_18570 ec71d2b931115fe333fe804a750fc84d 358 Pfam PF13800 Sigma factor regulator N-terminal 60 155 1.5E-22 T 13-10-2018 IPR029101 Sigma factor regulator, N-terminal RA13_00770 898ff15bed0d1f3a66269695a156d7dd 306 Gene3D G3DSA:1.20.1530.20 1 301 2.1E-58 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily RA13_00770 898ff15bed0d1f3a66269695a156d7dd 306 Pfam PF01758 Sodium Bile acid symporter family 31 198 7.4E-21 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RA13_07950 fb1560712032f721757c907aebadc255 443 Pfam PF05525 Branched-chain amino acid transport protein 8 432 5.3E-167 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RA13_07950 fb1560712032f721757c907aebadc255 443 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 420 6.6E-164 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RA13_15345 d8e3e35f73cddf821ba373ab14d96347 89 ProDom PD063023 UPF0296 YLZA BA4010/GBAA4010/BAS3723 BLI01788/BL02292 BT9727_3613 BC3870 TM1690 CBDBA43 SYC0519_C BCE33L3631 5 78 2.0E-36 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A RA13_15345 d8e3e35f73cddf821ba373ab14d96347 89 Hamap MF_01503 UPF0296 protein . 3 86 29.068 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A RA13_15345 d8e3e35f73cddf821ba373ab14d96347 89 Pfam PF04025 Domain of unknown function (DUF370) 5 77 2.9E-36 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A RA13_10365 157f5172d25a0866c3d4434b0006c967 142 Gene3D G3DSA:3.10.180.10 1 130 2.0E-39 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_10365 157f5172d25a0866c3d4434b0006c967 142 SUPERFAMILY SSF54593 2 133 1.07E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_10365 157f5172d25a0866c3d4434b0006c967 142 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 115 7.6E-24 T 13-10-2018 RA13_10365 157f5172d25a0866c3d4434b0006c967 142 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 3 130 6.7E-43 T 13-10-2018 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|MetaCyc: PWY-7854|Reactome: R-HSA-71032 RA13_08330 81e77d1458c69695b4f256a6546fe107 229 SMART SM01007 7 195 1.1E-64 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RA13_08330 81e77d1458c69695b4f256a6546fe107 229 SUPERFAMILY SSF53639 1 220 4.91E-68 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RA13_08330 81e77d1458c69695b4f256a6546fe107 229 Gene3D G3DSA:3.40.225.10 1 228 1.8E-62 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RA13_08330 81e77d1458c69695b4f256a6546fe107 229 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 194 3.5E-48 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal RA13_08330 81e77d1458c69695b4f256a6546fe107 229 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 228 3.2E-130 T 13-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 RA13_20720 c7a708e99a1a66b01902afd45807d014 290 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 18 221 3.0E-49 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_20720 c7a708e99a1a66b01902afd45807d014 290 PIRSF PIRSF006483 1 288 8.8E-74 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_20720 c7a708e99a1a66b01902afd45807d014 290 Gene3D G3DSA:3.30.70.120 199 273 1.0E-14 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_20720 c7a708e99a1a66b01902afd45807d014 290 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 227 281 1.6E-17 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 RA13_06500 2fea7ad64e57f21d674e6dda6e867f07 415 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 117 400 1.2E-84 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RA13_06500 2fea7ad64e57f21d674e6dda6e867f07 415 Pfam PF00425 chorismate binding enzyme 127 394 6.3E-80 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RA13_06500 2fea7ad64e57f21d674e6dda6e867f07 415 SUPERFAMILY SSF56322 23 406 2.22E-93 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_06500 2fea7ad64e57f21d674e6dda6e867f07 415 Gene3D G3DSA:3.60.120.10 3 411 1.8E-139 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_05765 f0880d988c48054fe8171faa89f5b9ac 46 Pfam PF09575 Small spore protein J (Spore_SspJ) 2 46 9.1E-26 T 13-10-2018 IPR014220 Small acid-soluble spore protein, SspJ RA13_05765 f0880d988c48054fe8171faa89f5b9ac 46 TIGRFAM TIGR02863 spore_sspJ: small, acid-soluble spore protein, SspJ family 3 46 6.2E-29 T 13-10-2018 IPR014220 Small acid-soluble spore protein, SspJ RA13_06400 f54e022f71c97f24857d47824f1da136 78 ProDom PD058324 UPF0349 LMO2392 BLI03401/BL03152 SA0800 SAR0901 LIN2491 SERP0525 GK2958 BT9727_4649 BC4937 1 77 3.0E-35 T 13-10-2018 RA13_06400 f54e022f71c97f24857d47824f1da136 78 Hamap MF_01542 UPF0349 protein . 1 77 28.716 T 13-10-2018 IPR022916 Protein of unknown function UPF0349 RA13_06400 f54e022f71c97f24857d47824f1da136 78 Pfam PF07293 Protein of unknown function (DUF1450) 1 75 3.3E-35 T 13-10-2018 IPR009910 Protein of unknown function DUF1450 RA13_18265 5e1d0f17b65daeed2948c015d98e6e39 236 Pfam PF12787 EcsC protein family 9 230 5.6E-69 T 13-10-2018 IPR024787 EcsC protein RA13_18265 5e1d0f17b65daeed2948c015d98e6e39 236 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 1 230 1.0E-99 T 13-10-2018 RA13_04255 d85f64a3f22884bf1f25a2d1359bd0df 153 ProDom PD092006 MEMBRANE YWOB TRANSMEMBRANE 36 135 1.0E-33 T 13-10-2018 IPR020218 Uncharacterised protein family, YwoB, transmembrane RA13_01430 8a219677fa9778d95c351cb7f5f95bee 533 PIRSF PIRSF038958 7 523 2.9E-80 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type RA13_01430 8a219677fa9778d95c351cb7f5f95bee 533 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 360 502 6.7E-24 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain RA13_01430 8a219677fa9778d95c351cb7f5f95bee 533 Pfam PF01943 Polysaccharide biosynthesis protein 13 309 2.2E-51 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 RA13_15145 34df129b4913575897f28f436ad6fe74 93 SUPERFAMILY SSF160544 5 86 2.62E-24 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RA13_15145 34df129b4913575897f28f436ad6fe74 93 Gene3D G3DSA:3.40.1690.10 6 87 1.2E-26 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RA13_15145 34df129b4913575897f28f436ad6fe74 93 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 82 2.2E-19 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RA13_15145 34df129b4913575897f28f436ad6fe74 93 TIGRFAM TIGR00789 flhB_rel: FlhB domain protein 7 89 3.6E-39 T 13-10-2018 IPR004683 Type III secretion system substrate exporter FlhB-like RA13_08245 165cc7fceee5e9b44f38373cafe7b995 231 Pfam PF04172 LrgB-like family 14 227 2.4E-69 T 13-10-2018 IPR007300 CidB/LrgB family RA13_08245 165cc7fceee5e9b44f38373cafe7b995 231 Hamap MF_01142 Antiholin-like protein LrgB [lrgB]. 1 230 32.353 T 13-10-2018 IPR024891 Antiholin-like protein LrgB RA13_10985 59d3bf71326545103258543e52b443ac 45 Pfam PF14140 YpzI-like protein 3 44 7.6E-26 T 13-10-2018 IPR025414 YpzI-like protein RA13_21775 a72dc707dee0407ae915dc58c20ddc3e 400 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 210 2.8E-59 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RA13_21775 a72dc707dee0407ae915dc58c20ddc3e 400 Gene3D G3DSA:3.40.50.300 1 229 2.8E-72 T 13-10-2018 RA13_21775 a72dc707dee0407ae915dc58c20ddc3e 400 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 259 375 2.2E-26 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RA13_21775 a72dc707dee0407ae915dc58c20ddc3e 400 SMART SM00833 259 375 3.3E-47 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RA13_21775 a72dc707dee0407ae915dc58c20ddc3e 400 SUPERFAMILY SSF52540 2 307 6.73E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_19690 85ac0f0fa7015649da201bea5d92b325 140 Pfam PF13411 MerR HTH family regulatory protein 4 72 9.4E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_19690 85ac0f0fa7015649da201bea5d92b325 140 SUPERFAMILY SSF46955 4 125 8.06E-24 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_19690 85ac0f0fa7015649da201bea5d92b325 140 Gene3D G3DSA:1.10.1660.10 1 140 2.2E-30 T 13-10-2018 RA13_19690 85ac0f0fa7015649da201bea5d92b325 140 SMART SM00422 4 74 2.1E-30 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_01695 83a79ef46f3cabca3691cd029c7b33f7 294 Gene3D G3DSA:3.20.20.70 1 294 6.0E-149 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_01695 83a79ef46f3cabca3691cd029c7b33f7 294 PIRSF PIRSF029271 1 294 1.1E-153 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01695 83a79ef46f3cabca3691cd029c7b33f7 294 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 4 294 53.818 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01695 83a79ef46f3cabca3691cd029c7b33f7 294 Pfam PF01680 SOR/SNZ family 8 212 3.2E-107 T 13-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01695 83a79ef46f3cabca3691cd029c7b33f7 294 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 9 294 3.6E-160 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01695 83a79ef46f3cabca3691cd029c7b33f7 294 ProSitePatterns PS01235 PdxS/SNZ family signature. 205 223 - T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01695 83a79ef46f3cabca3691cd029c7b33f7 294 SUPERFAMILY SSF51366 18 268 1.41E-68 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_06140 67302339615f05c8fbfdf87529a07eb3 299 SUPERFAMILY SSF161098 32 299 3.79E-74 T 13-10-2018 IPR035906 MetI-like superfamily RA13_06140 67302339615f05c8fbfdf87529a07eb3 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 292 2.0E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_06140 67302339615f05c8fbfdf87529a07eb3 299 Gene3D G3DSA:1.10.3720.10 22 290 4.6E-65 T 13-10-2018 IPR035906 MetI-like superfamily RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 SMART SM00028 221 254 19.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 SMART SM00028 335 368 54.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 SMART SM00028 140 173 39.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 SMART SM00028 261 294 230.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 SMART SM00028 181 214 94.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 SMART SM00028 100 133 250.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 Gene3D G3DSA:1.25.40.10 2 374 5.0E-100 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_03270 d74ec350c90e012713eeb3ceea7ce942 379 SUPERFAMILY SSF48452 101 296 3.71E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_11340 05906e6deebc618d0ffff6335aaf4d03 184 PIRSF PIRSF021290 1 179 3.1E-71 T 13-10-2018 IPR010697 Protein of unknown function DUF1273 RA13_11340 05906e6deebc618d0ffff6335aaf4d03 184 SUPERFAMILY SSF102405 1 177 1.37E-62 T 13-10-2018 RA13_11340 05906e6deebc618d0ffff6335aaf4d03 184 Pfam PF06908 Protein of unknown function (DUF1273) 4 171 3.3E-70 T 13-10-2018 IPR010697 Protein of unknown function DUF1273 RA13_11340 05906e6deebc618d0ffff6335aaf4d03 184 Hamap MF_01575 UPF0398 protein . 1 177 35.675 T 13-10-2018 IPR010697 Protein of unknown function DUF1273 RA13_11340 05906e6deebc618d0ffff6335aaf4d03 184 Gene3D G3DSA:3.40.50.450 1 180 1.0E-69 T 13-10-2018 RA13_19095 2256ad9c8adbc1bbb484dca43c1f2fb7 145 Pfam PF01475 Ferric uptake regulator family 15 133 1.2E-40 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RA13_19095 2256ad9c8adbc1bbb484dca43c1f2fb7 145 SUPERFAMILY SSF46785 8 137 3.6E-42 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_19095 2256ad9c8adbc1bbb484dca43c1f2fb7 145 Gene3D G3DSA:3.30.1490.190 88 145 3.6E-25 T 13-10-2018 RA13_19095 2256ad9c8adbc1bbb484dca43c1f2fb7 145 Gene3D G3DSA:1.10.10.10 1 87 5.5E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_13680 5287e64210d2e3bb4b0101014c34e097 123 Pfam PF09643 YopX protein 27 121 6.0E-21 T 13-10-2018 IPR019096 YopX protein RA13_13680 5287e64210d2e3bb4b0101014c34e097 123 Gene3D G3DSA:2.30.30.290 40 123 6.5E-16 T 13-10-2018 IPR023385 YopX-like, C-terminal RA13_13680 5287e64210d2e3bb4b0101014c34e097 123 SUPERFAMILY SSF159006 2 123 7.46E-27 T 13-10-2018 RA13_13680 5287e64210d2e3bb4b0101014c34e097 123 TIGRFAM TIGR01671 phage_TIGR01671: phage conserved hypothetical protein TIGR01671 32 121 1.7E-12 T 13-10-2018 IPR010024 Conserved hypothetical protein CHP1671 RA13_01875 825a611e93b5cbcfdbfe715f444eaef2 68 PIRSF PIRSF037263 1 66 1.4E-35 T 13-10-2018 IPR009296 Protein of unknown function DUF951 RA13_01875 825a611e93b5cbcfdbfe715f444eaef2 68 Pfam PF06107 Bacterial protein of unknown function (DUF951) 7 59 1.1E-30 T 13-10-2018 IPR009296 Protein of unknown function DUF951 RA13_11335 bd51b29862f0dcacf558a8dc52b89388 74 ProDom PD057197 SPORE COAT CAPSID D INNER D COTD SPORULATION 1 74 4.0E-32 T 13-10-2018 IPR020108 Spore coat protein CotD RA13_11335 bd51b29862f0dcacf558a8dc52b89388 74 Pfam PF11122 Inner spore coat protein D 11 70 1.9E-16 T 13-10-2018 IPR020108 Spore coat protein CotD RA13_05940 88630afff2c111b480bcd77ccf6c089e 291 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 8.4E-20 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_05940 88630afff2c111b480bcd77ccf6c089e 291 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 1.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_05940 88630afff2c111b480bcd77ccf6c089e 291 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 1.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_05940 88630afff2c111b480bcd77ccf6c089e 291 SUPERFAMILY SSF46689 4 75 1.6E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_05940 88630afff2c111b480bcd77ccf6c089e 291 Gene3D G3DSA:1.10.357.10 1 194 6.0E-32 T 13-10-2018 RA13_03575 2fd7b5e416846b1c3ba7bc3c7b72dbf8 182 TIGRFAM TIGR02728 spore_gerQ: spore coat protein GerQ 93 174 1.1E-47 T 13-10-2018 IPR014099 Spore coat protein GerQ RA13_03575 2fd7b5e416846b1c3ba7bc3c7b72dbf8 182 Pfam PF09671 Spore coat protein (Spore_GerQ) 95 170 2.6E-41 T 13-10-2018 IPR014099 Spore coat protein GerQ RA13_03575 2fd7b5e416846b1c3ba7bc3c7b72dbf8 182 PIRSF PIRSF038931 4 182 3.7E-53 T 13-10-2018 IPR014099 Spore coat protein GerQ RA13_15490 b039d1f2da30e4e8bdb91e71f403aaf1 148 Pfam PF04472 Cell division protein SepF 61 132 3.3E-31 T 13-10-2018 IPR007561 Cell division protein SepF/SepF-related GO:0090529 RA13_15490 b039d1f2da30e4e8bdb91e71f403aaf1 148 Gene3D G3DSA:3.30.110.150 54 148 4.5E-38 T 13-10-2018 IPR038594 SepF-like superfamily RA13_15490 b039d1f2da30e4e8bdb91e71f403aaf1 148 Hamap MF_01197 Cell division protein SepF [sepF]. 1 140 20.107 T 13-10-2018 IPR023052 Cell division protein SepF GO:0090529 RA13_04280 8992bd6aec0f0e7f5cb7f25012ec44ff 138 SMART SM00347 25 124 3.6E-34 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_04280 8992bd6aec0f0e7f5cb7f25012ec44ff 138 Pfam PF01047 MarR family 35 88 2.2E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_04280 8992bd6aec0f0e7f5cb7f25012ec44ff 138 SUPERFAMILY SSF46785 5 136 2.27E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_04280 8992bd6aec0f0e7f5cb7f25012ec44ff 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 1.7E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_04280 8992bd6aec0f0e7f5cb7f25012ec44ff 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 1.7E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_04280 8992bd6aec0f0e7f5cb7f25012ec44ff 138 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 1.7E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_04280 8992bd6aec0f0e7f5cb7f25012ec44ff 138 Gene3D G3DSA:1.10.10.10 2 137 6.4E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15565 c28aab201c5a971555a6731a8c2f011b 261 Gene3D G3DSA:3.40.50.10960 122 236 7.7E-39 T 13-10-2018 RA13_15565 c28aab201c5a971555a6731a8c2f011b 261 Pfam PF03799 Cell division protein FtsQ 127 238 5.1E-9 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB RA13_15565 c28aab201c5a971555a6731a8c2f011b 261 Pfam PF08478 POTRA domain, FtsQ-type 54 123 2.4E-19 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type RA13_15565 c28aab201c5a971555a6731a8c2f011b 261 Gene3D G3DSA:3.10.20.310 54 121 5.7E-7 T 13-10-2018 RA13_15565 c28aab201c5a971555a6731a8c2f011b 261 Hamap MF_00912 Cell division protein DivIB [divIB]. 13 253 31.102 T 13-10-2018 IPR026580 Cell division protein DivIB RA13_07590 a83a37304e30709d5d8a398cfb20c8dc 390 SUPERFAMILY SSF53383 3 387 7.93E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_07590 a83a37304e30709d5d8a398cfb20c8dc 390 Pfam PF00155 Aminotransferase class I and II 40 379 2.5E-62 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_07590 a83a37304e30709d5d8a398cfb20c8dc 390 Gene3D G3DSA:3.40.640.10 55 287 1.1E-132 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_07590 a83a37304e30709d5d8a398cfb20c8dc 390 Gene3D G3DSA:3.90.1150.10 34 377 1.1E-132 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_07590 a83a37304e30709d5d8a398cfb20c8dc 390 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 19 378 1.0E-146 T 13-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 RA13_09120 456b8b46435f31c99dd581d610ee9054 217 Gene3D G3DSA:3.40.50.150 4 217 3.5E-62 T 13-10-2018 RA13_09120 456b8b46435f31c99dd581d610ee9054 217 Pfam PF01596 O-methyltransferase 43 215 6.1E-28 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 RA13_09120 456b8b46435f31c99dd581d610ee9054 217 SUPERFAMILY SSF53335 7 216 6.04E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 Pfam PF00067 Cytochrome P450 79 374 3.5E-27 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 SUPERFAMILY SSF48264 13 405 1.57E-96 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 294 321 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 94 105 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 140 156 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 352 363 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 157 172 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 276 287 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 322 337 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 195 217 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 PRINTS PR00359 B-class P450 signature 343 352 8.1E-59 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 RA13_14560 d0008432682aa1e6dcaca3320aded3ad 413 Gene3D G3DSA:1.10.630.10 2 413 1.2E-138 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_11795 c63a7e32f1f86cc296f07f69b3e3dd77 232 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 232 2.0E-117 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RA13_11795 c63a7e32f1f86cc296f07f69b3e3dd77 232 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 RA13_11795 c63a7e32f1f86cc296f07f69b3e3dd77 232 Pfam PF01048 Phosphorylase superfamily 15 217 3.6E-41 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RA13_11795 c63a7e32f1f86cc296f07f69b3e3dd77 232 Gene3D G3DSA:3.40.50.1580 1 232 5.0E-74 T 13-10-2018 RA13_11795 c63a7e32f1f86cc296f07f69b3e3dd77 232 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 232 46.167 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 RA13_11795 c63a7e32f1f86cc296f07f69b3e3dd77 232 SUPERFAMILY SSF53167 2 230 2.75E-90 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RA13_20195 4b91a5019845eab24ac4591db68624e0 57 Pfam PF13076 Fur-regulated basic protein A 12 47 2.0E-15 T 13-10-2018 IPR025072 Fur-regulated basic protein A RA13_05225 9ef5e37be263aef3a39210a996c6b773 104 Gene3D G3DSA:1.10.3730.20 1 104 1.6E-32 T 13-10-2018 RA13_05225 9ef5e37be263aef3a39210a996c6b773 104 SUPERFAMILY SSF103481 5 103 1.57E-21 T 13-10-2018 RA13_05225 9ef5e37be263aef3a39210a996c6b773 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 6.8E-33 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RA13_16645 06b0709b6e5851d909e1982958f810c2 208 SUPERFAMILY SSF53254 1 203 3.67E-53 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RA13_16645 06b0709b6e5851d909e1982958f810c2 208 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 189 5.4E-56 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RA13_16645 06b0709b6e5851d909e1982958f810c2 208 PIRSF PIRSF000709 2 187 3.5E-17 T 13-10-2018 RA13_16645 06b0709b6e5851d909e1982958f810c2 208 Gene3D G3DSA:3.40.50.1240 2 207 1.0E-63 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RA13_16645 06b0709b6e5851d909e1982958f810c2 208 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 RA13_16645 06b0709b6e5851d909e1982958f810c2 208 SMART SM00855 3 157 1.0E-20 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RA13_21740 dbad552021cf643457fd582e7c934b72 242 Gene3D G3DSA:3.40.50.300 13 88 2.1E-8 T 13-10-2018 RA13_21740 dbad552021cf643457fd582e7c934b72 242 SUPERFAMILY SSF52540 25 214 1.02E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_21740 dbad552021cf643457fd582e7c934b72 242 Gene3D G3DSA:3.40.50.300 89 221 1.9E-10 T 13-10-2018 RA13_21740 dbad552021cf643457fd582e7c934b72 242 Pfam PF13476 AAA domain 30 80 8.9E-9 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain RA13_21740 dbad552021cf643457fd582e7c934b72 242 Pfam PF13175 AAA ATPase domain 140 195 3.1E-9 T 13-10-2018 RA13_21740 dbad552021cf643457fd582e7c934b72 242 SMART SM00382 35 210 1.5E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_02280 75541babff0660c1d7867ef67cd0ed1a 78 Pfam PF03235 Protein of unknown function DUF262 15 62 1.2E-9 T 13-10-2018 IPR004919 Domain of unknown function DUF262 RA13_11425 595ee3d7b350661efd715b159e22a141 168 Gene3D G3DSA:1.20.120.1630 1 168 1.9E-22 T 13-10-2018 RA13_11425 595ee3d7b350661efd715b159e22a141 168 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 74 163 6.0E-27 T 13-10-2018 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 RA13_19130 df8625eb28df040d25406a20d7ded24c 82 TIGRFAM TIGR01442 SASP_gamma: small, acid-soluble spore protein, gamma-type 6 82 1.3E-27 T 13-10-2018 IPR006341 Acid-soluble spore protein, gamma-type GO:0030435 RA13_19130 df8625eb28df040d25406a20d7ded24c 82 Pfam PF04259 Small, acid-soluble spore protein, gamma-type 7 82 1.6E-33 T 13-10-2018 IPR006341 Acid-soluble spore protein, gamma-type GO:0030435 RA13_05220 7f7b72a7812d41e69d3bf66c80cb8307 175 SUPERFAMILY SSF55729 3 162 2.62E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_05220 7f7b72a7812d41e69d3bf66c80cb8307 175 Gene3D G3DSA:3.40.630.30 4 171 4.2E-47 T 13-10-2018 RA13_05220 7f7b72a7812d41e69d3bf66c80cb8307 175 Pfam PF13302 Acetyltransferase (GNAT) domain 5 138 1.7E-20 T 13-10-2018 IPR000182 GNAT domain RA13_13195 6dde636f5c0a8cda46c778e78a71c61a 432 SUPERFAMILY SSF53850 34 424 1.09E-76 T 13-10-2018 RA13_13195 6dde636f5c0a8cda46c778e78a71c61a 432 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 146 163 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 RA13_13195 6dde636f5c0a8cda46c778e78a71c61a 432 Pfam PF13416 Bacterial extracellular solute-binding protein 54 369 6.5E-38 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RA13_13195 6dde636f5c0a8cda46c778e78a71c61a 432 Gene3D G3DSA:3.40.190.10 28 432 1.3E-83 T 13-10-2018 RA13_02705 13f4083ea4539c53bf3756a87ff84931 393 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 392 5.8E-137 T 13-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 RA13_02705 13f4083ea4539c53bf3756a87ff84931 393 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 3.0E-19 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 RA13_02705 13f4083ea4539c53bf3756a87ff84931 393 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 392 2.7E-61 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 RA13_09155 fe505f72c8f7bfd7e59ac43948838b45 67 Pfam PF10750 Protein of unknown function (DUF2536) 1 65 9.8E-34 T 13-10-2018 IPR019686 Protein of unknown function DUF2536 RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 Gene3D G3DSA:2.120.10.30 157 319 9.9E-22 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 Pfam PF07676 WD40-like Beta Propeller Repeat 59 92 2.8E-8 T 13-10-2018 IPR011659 WD40-like Beta Propeller RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 Pfam PF07676 WD40-like Beta Propeller Repeat 182 210 3.0E-5 T 13-10-2018 IPR011659 WD40-like Beta Propeller RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 Pfam PF07676 WD40-like Beta Propeller Repeat 232 254 0.015 T 13-10-2018 IPR011659 WD40-like Beta Propeller RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 Gene3D G3DSA:3.40.50.1820 404 658 2.7E-79 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 SUPERFAMILY SSF53474 401 658 1.5E-74 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 Pfam PF00326 Prolyl oligopeptidase family 449 658 1.2E-56 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 SUPERFAMILY SSF82171 14 399 4.05E-53 T 13-10-2018 RA13_06375 6b0e55705f7acf7ce7fbf2762cf65c53 658 Gene3D G3DSA:2.120.10.30 7 156 8.2E-30 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RA13_09810 92271771e94ece90bf642890144d44bf 202 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 1.0E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.0E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.0E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 1.0E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 1.0E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 SUPERFAMILY SSF46609 1 91 5.63E-38 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 4.6E-34 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 195 1.6E-43 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 SUPERFAMILY SSF54719 92 201 1.96E-49 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 Gene3D G3DSA:1.10.287.990 20 90 8.7E-32 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 Gene3D G3DSA:2.40.500.20 91 202 3.5E-53 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_09810 92271771e94ece90bf642890144d44bf 202 PIRSF PIRSF000349 1 202 8.9E-87 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RA13_12365 5d6aed851189cd899e34cdaaf96b840b 110 SUPERFAMILY SSF50249 2 109 2.06E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold RA13_12365 5d6aed851189cd899e34cdaaf96b840b 110 Pfam PF01588 Putative tRNA binding domain 12 108 9.8E-16 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RA13_12365 5d6aed851189cd899e34cdaaf96b840b 110 Gene3D G3DSA:2.40.50.140 1 110 6.1E-29 T 13-10-2018 RA13_12365 5d6aed851189cd899e34cdaaf96b840b 110 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 4 109 7.5E-48 T 13-10-2018 IPR008231 Probable chaperone CsaA RA13_05015 ce5747866ad8b32802369b057881b504 269 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 265 2.0E-96 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RA13_05015 ce5747866ad8b32802369b057881b504 269 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 136 148 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RA13_05015 ce5747866ad8b32802369b057881b504 269 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 10 256 2.5E-80 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RA13_05015 ce5747866ad8b32802369b057881b504 269 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 7 261 18.514 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RA13_15635 a2c59cb6aad3f9a69cab1db2e83e97b5 160 Pfam PF00583 Acetyltransferase (GNAT) family 30 105 1.3E-6 T 13-10-2018 IPR000182 GNAT domain RA13_15635 a2c59cb6aad3f9a69cab1db2e83e97b5 160 Gene3D G3DSA:3.40.630.30 1 160 9.5E-65 T 13-10-2018 RA13_15635 a2c59cb6aad3f9a69cab1db2e83e97b5 160 Hamap MF_00824 Uncharacterized N-acetyltransferase . 1 148 42.16 T 13-10-2018 IPR017274 Putative N-acetyltransferase YlbP RA13_15635 a2c59cb6aad3f9a69cab1db2e83e97b5 160 PIRSF PIRSF037732 1 160 6.8E-89 T 13-10-2018 IPR017274 Putative N-acetyltransferase YlbP RA13_15635 a2c59cb6aad3f9a69cab1db2e83e97b5 160 SUPERFAMILY SSF55729 26 143 6.81E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_20445 5ab25a31a8938b1119e1e6923b347044 229 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 216 3.1E-50 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 RA13_20445 5ab25a31a8938b1119e1e6923b347044 229 Gene3D G3DSA:3.30.420.40 3 216 1.7E-46 T 13-10-2018 RA13_20445 5ab25a31a8938b1119e1e6923b347044 229 Gene3D G3DSA:3.30.420.40 95 189 1.7E-46 T 13-10-2018 RA13_20445 5ab25a31a8938b1119e1e6923b347044 229 SUPERFAMILY SSF53067 1 103 3.76E-27 T 13-10-2018 RA13_20445 5ab25a31a8938b1119e1e6923b347044 229 SUPERFAMILY SSF53067 108 214 3.24E-14 T 13-10-2018 RA13_20445 5ab25a31a8938b1119e1e6923b347044 229 Pfam PF00814 Glycoprotease family 32 224 1.8E-34 T 13-10-2018 IPR000905 Gcp-like domain RA13_04140 52e6cce5cff88caaccee25c073a233b5 124 SUPERFAMILY SSF51278 1 119 5.1E-43 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04140 52e6cce5cff88caaccee25c073a233b5 124 Pfam PF00699 Urease beta subunit 3 98 1.5E-38 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04140 52e6cce5cff88caaccee25c073a233b5 124 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 103 1.9E-46 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_04140 52e6cce5cff88caaccee25c073a233b5 124 Gene3D G3DSA:2.10.150.10 1 123 4.3E-45 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 SUPERFAMILY SSF103473 10 400 1.18E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 Pfam PF07690 Major Facilitator Superfamily 25 362 1.1E-43 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 PRINTS PR01035 Tetracycline resistance protein signature 169 189 9.2E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 PRINTS PR01035 Tetracycline resistance protein signature 109 130 9.2E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 PRINTS PR01035 Tetracycline resistance protein signature 25 41 9.2E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 PRINTS PR01035 Tetracycline resistance protein signature 282 303 9.2E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 PRINTS PR01035 Tetracycline resistance protein signature 82 106 9.2E-8 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 15 394 5.9E-100 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RA13_03620 ad32d558cf20fa3dcf206a8ea06a4aa8 401 Gene3D G3DSA:1.20.1720.10 15 394 4.8E-98 T 13-10-2018 RA13_20270 19bef75cbdcb00e039f34e7dad61a642 69 Pfam PF14169 Cold-inducible protein YdjO 2 59 6.2E-28 T 13-10-2018 IPR025916 Cold-inducible protein YdjO RA13_07040 6b66db866b5c7e1b3606cbcce1b1b680 222 SUPERFAMILY SSF51735 7 136 5.01E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_07040 6b66db866b5c7e1b3606cbcce1b1b680 222 Pfam PF02080 TrkA-C domain 156 219 1.5E-10 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RA13_07040 6b66db866b5c7e1b3606cbcce1b1b680 222 Gene3D G3DSA:3.40.50.720 1 141 5.1E-36 T 13-10-2018 RA13_07040 6b66db866b5c7e1b3606cbcce1b1b680 222 SUPERFAMILY SSF116726 136 219 3.14E-18 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_07040 6b66db866b5c7e1b3606cbcce1b1b680 222 Pfam PF02254 TrkA-N domain 9 124 2.5E-25 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RA13_07040 6b66db866b5c7e1b3606cbcce1b1b680 222 Gene3D G3DSA:3.30.70.1450 142 222 1.8E-26 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RA13_16460 8ca9e33bc77bfed870a427a9ad81e806 449 Pfam PF02386 Cation transport protein 23 427 1.4E-59 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RA13_07295 2751ab3b1538444cc1b6c53bfc18f104 471 Hamap MF_01935 Isochorismate synthase MenF [menF]. 1 468 31.072 T 13-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RA13_07295 2751ab3b1538444cc1b6c53bfc18f104 471 SUPERFAMILY SSF56322 24 467 2.22E-106 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_07295 2751ab3b1538444cc1b6c53bfc18f104 471 Gene3D G3DSA:3.60.120.10 9 470 9.5E-118 T 13-10-2018 IPR005801 ADC synthase GO:0009058 RA13_07295 2751ab3b1538444cc1b6c53bfc18f104 471 Pfam PF00425 chorismate binding enzyme 204 458 5.4E-80 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RA13_07295 2751ab3b1538444cc1b6c53bfc18f104 471 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 117 466 1.2E-116 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RA13_09360 b533fe2ac0702159bb2dc01a0a6bcf57 246 SUPERFAMILY SSF55469 1 245 1.44E-64 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_09360 b533fe2ac0702159bb2dc01a0a6bcf57 246 Gene3D G3DSA:3.40.109.10 1 246 7.5E-68 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_09360 b533fe2ac0702159bb2dc01a0a6bcf57 246 PIRSF PIRSF005426 1 246 2.1E-78 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 RA13_09360 b533fe2ac0702159bb2dc01a0a6bcf57 246 Pfam PF00881 Nitroreductase family 12 159 2.4E-15 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 70 95 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 349 369 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 322 341 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 140 162 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 187 206 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 287 313 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 1.4E-34 T 13-10-2018 RA13_00340 6ff79722202435882dd27d67a9025503 416 Pfam PF00375 Sodium:dicarboxylate symporter family 6 395 1.9E-118 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RA13_00340 6ff79722202435882dd27d67a9025503 416 SUPERFAMILY SSF118215 6 396 1.09E-111 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_00340 6ff79722202435882dd27d67a9025503 416 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 32 47 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RA13_00340 6ff79722202435882dd27d67a9025503 416 Gene3D G3DSA:1.10.3860.10 1 412 6.3E-122 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_00340 6ff79722202435882dd27d67a9025503 416 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 290 313 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RA13_14725 a02bba8a25c6c01fa42c3c16e3e55909 263 PIRSF PIRSF021288 1 262 1.7E-145 T 13-10-2018 IPR016784 Uncharacterised protein UCP021288 with ACT domain RA13_14725 a02bba8a25c6c01fa42c3c16e3e55909 263 SUPERFAMILY SSF55021 6 71 4.58E-7 T 13-10-2018 RA13_14725 a02bba8a25c6c01fa42c3c16e3e55909 263 Pfam PF11868 Protein of unknown function (DUF3388) 72 261 5.0E-105 T 13-10-2018 IPR024514 Domain of unknown function DUF3388 RA13_17455 f81ca2a1d302385ae490d3afe4b6042c 66 Pfam PF02597 ThiS family 3 66 1.3E-11 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RA13_17455 f81ca2a1d302385ae490d3afe4b6042c 66 SUPERFAMILY SSF54285 2 65 9.91E-18 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RA13_17455 f81ca2a1d302385ae490d3afe4b6042c 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 3.3E-23 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis RA13_17455 f81ca2a1d302385ae490d3afe4b6042c 66 Gene3D G3DSA:3.10.20.30 1 66 1.2E-20 T 13-10-2018 IPR012675 Beta-grasp domain superfamily RA13_16475 8a0cb858c77a5661856341139d7d763c 64 Gene3D G3DSA:1.10.8.910 5 64 1.7E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily RA13_16475 8a0cb858c77a5661856341139d7d763c 64 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 20 29 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_16475 8a0cb858c77a5661856341139d7d763c 64 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 5 59 5.3E-24 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 RA13_16475 8a0cb858c77a5661856341139d7d763c 64 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 38 52 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_20985 46258fea6bf6de7807849f86c1503e8f 199 Gene3D G3DSA:3.60.40.10 1 198 5.2E-47 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_20985 46258fea6bf6de7807849f86c1503e8f 199 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 35 158 2.2E-14 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_20985 46258fea6bf6de7807849f86c1503e8f 199 SMART SM00332 6 196 0.002 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_20985 46258fea6bf6de7807849f86c1503e8f 199 SUPERFAMILY SSF81606 14 194 1.96E-13 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_20985 46258fea6bf6de7807849f86c1503e8f 199 SMART SM00331 9 198 1.1E-47 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_19970 fe07169ab2a5204c17fb3fe563eb9512 629 Pfam PF04740 LXG domain of WXG superfamily 2 201 2.3E-52 T 13-10-2018 IPR006829 LXG domain RA13_11600 3bac2a6c7ca640eaaa61ff3cf95f2bb3 450 PIRSF PIRSF006603 1 449 7.0E-142 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_11600 3bac2a6c7ca640eaaa61ff3cf95f2bb3 450 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 412 1.0E-75 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_11600 3bac2a6c7ca640eaaa61ff3cf95f2bb3 450 Pfam PF01554 MatE 21 182 3.1E-34 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_11600 3bac2a6c7ca640eaaa61ff3cf95f2bb3 450 Pfam PF01554 MatE 241 401 1.9E-33 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_10575 6dd062801037aa61087fca691bc01931 439 SUPERFAMILY SSF51735 236 437 2.49E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_10575 6dd062801037aa61087fca691bc01931 439 SUPERFAMILY SSF53223 85 234 8.63E-49 T 13-10-2018 RA13_10575 6dd062801037aa61087fca691bc01931 439 Pfam PF00390 Malic enzyme, N-terminal domain 97 224 1.8E-25 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_10575 6dd062801037aa61087fca691bc01931 439 SMART SM00919 236 435 6.7E-44 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RA13_10575 6dd062801037aa61087fca691bc01931 439 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 252 324 2.7E-6 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RA13_10575 6dd062801037aa61087fca691bc01931 439 SMART SM01274 91 224 8.0E-68 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RA13_10575 6dd062801037aa61087fca691bc01931 439 Gene3D G3DSA:3.40.50.10380 72 233 6.3E-63 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RA13_10575 6dd062801037aa61087fca691bc01931 439 Gene3D G3DSA:3.40.50.720 234 439 2.7E-46 T 13-10-2018 RA13_10575 6dd062801037aa61087fca691bc01931 439 PIRSF PIRSF000106 1 439 2.3E-80 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RA13_10575 6dd062801037aa61087fca691bc01931 439 ProSitePatterns PS00331 Malic enzymes signature. 232 248 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RA13_00470 fa1e70e01913f27b2199b49150512346 299 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 43 284 1.6E-59 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RA13_00470 fa1e70e01913f27b2199b49150512346 299 Gene3D G3DSA:3.20.20.190 26 293 1.3E-115 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_00470 fa1e70e01913f27b2199b49150512346 299 SUPERFAMILY SSF51695 38 289 2.88E-76 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_02640 9dc6ad6c144b52d1f1e28f82bd369fe8 627 Pfam PF02687 FtsX-like permease family 85 177 9.6E-6 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_02640 9dc6ad6c144b52d1f1e28f82bd369fe8 627 PIRSF PIRSF018968 1 624 5.9E-132 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 RA13_15500 9a1669e7faf0544b273c926ebcd7a8ec 263 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 261 1.3E-72 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RA13_15500 9a1669e7faf0544b273c926ebcd7a8ec 263 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 258 1.0E-71 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RA13_15500 9a1669e7faf0544b273c926ebcd7a8ec 263 Gene3D G3DSA:3.60.140.10 2 263 1.1E-90 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily RA13_15500 9a1669e7faf0544b273c926ebcd7a8ec 263 SUPERFAMILY SSF64438 12 261 3.05E-79 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic RA13_09655 f6b85f9b95ec0b462517e47dd5bf04ef 319 SUPERFAMILY SSF52540 51 279 4.67E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_09655 f6b85f9b95ec0b462517e47dd5bf04ef 319 Gene3D G3DSA:3.40.50.300 110 316 1.8E-76 T 13-10-2018 RA13_09655 f6b85f9b95ec0b462517e47dd5bf04ef 319 Pfam PF02562 PhoH-like protein 113 316 9.5E-95 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 RA13_01345 991e557e780dd32a7066292191f6fa08 296 Gene3D G3DSA:3.10.50.40 155 248 3.8E-29 T 13-10-2018 RA13_01345 991e557e780dd32a7066292191f6fa08 296 Gene3D G3DSA:1.10.4030.30 55 154 3.8E-29 T 13-10-2018 RA13_01345 991e557e780dd32a7066292191f6fa08 296 Pfam PF13145 PPIC-type PPIASE domain 135 261 1.2E-18 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 RA13_01345 991e557e780dd32a7066292191f6fa08 296 SUPERFAMILY SSF109998 38 183 1.26E-22 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily RA13_01345 991e557e780dd32a7066292191f6fa08 296 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 183 204 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 RA13_01345 991e557e780dd32a7066292191f6fa08 296 SUPERFAMILY SSF54534 147 246 1.02E-17 T 13-10-2018 RA13_04290 f4684f0f027308a0bfe21f2076c5c53f 93 Pfam PF12116 Stage III sporulation protein D 2 82 6.2E-41 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID RA13_04290 f4684f0f027308a0bfe21f2076c5c53f 93 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 41 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RA13_04290 f4684f0f027308a0bfe21f2076c5c53f 93 TIGRFAM TIGR02844 spore_III_D: sporulation transcriptional regulator SpoIIID 2 81 2.6E-46 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID RA13_04290 f4684f0f027308a0bfe21f2076c5c53f 93 Gene3D G3DSA:1.10.10.60 1 93 9.1E-46 T 13-10-2018 RA13_12690 e1b7ae0d8901392093ee895a6aaa7f10 193 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 192 9.7E-75 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RA13_12690 e1b7ae0d8901392093ee895a6aaa7f10 193 SMART SM01207 8 183 4.0E-82 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RA13_12690 e1b7ae0d8901392093ee895a6aaa7f10 193 Pfam PF02660 Glycerol-3-phosphate acyltransferase 9 182 4.2E-53 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RA13_12690 e1b7ae0d8901392093ee895a6aaa7f10 193 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 5 191 20.525 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 RA13_18650 d019df228eae4a7b8b978aa5c2146c60 468 Pfam PF04293 SpoVR like protein 5 406 3.7E-162 T 13-10-2018 IPR007390 Sporulation stage V, protein R RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 Pfam PF00271 Helicase conserved C-terminal domain 216 323 1.8E-16 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 Pfam PF00270 DEAD/DEAH box helicase 20 177 2.1E-21 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 SUPERFAMILY SSF52540 57 346 6.67E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 362 2.9E-112 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 SMART SM00490 242 324 4.5E-22 T 13-10-2018 IPR001650 Helicase, C-terminal RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 Gene3D G3DSA:3.40.50.300 1 196 5.4E-73 T 13-10-2018 RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 131 140 - T 13-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site RA13_10905 7646452e51590ecaacf4dbc1068551dd 496 SMART SM00487 13 208 8.3E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RA13_11345 f32fbe9d4fe40542ede66ca6763491d1 98 Hamap MF_02011 Cell cycle protein GpsB [gpsB]. 3 94 24.062 T 13-10-2018 IPR011229 Cell cycle protein GpsB RA13_11345 f32fbe9d4fe40542ede66ca6763491d1 98 Pfam PF05103 DivIVA protein 8 68 6.9E-16 T 13-10-2018 IPR007793 DivIVA family RA13_11345 f32fbe9d4fe40542ede66ca6763491d1 98 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 8 41 5.3E-14 T 13-10-2018 IPR019933 DivIVA domain RA13_11345 f32fbe9d4fe40542ede66ca6763491d1 98 PIRSF PIRSF029938 1 98 1.1E-38 T 13-10-2018 IPR011229 Cell cycle protein GpsB RA13_06450 e8077bab2f0c3f0e7724c21b9106c2e7 218 Pfam PF06725 3D domain 124 185 2.3E-19 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RA13_06450 e8077bab2f0c3f0e7724c21b9106c2e7 218 SUPERFAMILY SSF50685 124 165 2.41E-8 T 13-10-2018 IPR036908 RlpA-like domain superfamily RA13_17390 104443f55bf6d67527d03e9a721f49f1 47 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 23 46 3.1E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_17390 104443f55bf6d67527d03e9a721f49f1 47 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 21 45 1.3E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_17485 74d2ffa196834addbf02e9c6acb425b1 244 Gene3D G3DSA:3.60.21.10 1 243 6.8E-63 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_17485 74d2ffa196834addbf02e9c6acb425b1 244 Hamap MF_01443 Bis(5'-nucleosyl)-tetraphosphatase PrpE [asymmetrical] [prpE]. 1 244 59.859 T 13-10-2018 IPR023937 Bis(5'-nucleosyl)-tetraphosphatase PrpE GO:0004081|GO:0016151 KEGG: 00230+3.6.1.17|KEGG: 00240+3.6.1.17 RA13_17485 74d2ffa196834addbf02e9c6acb425b1 244 Pfam PF00149 Calcineurin-like phosphoesterase 4 194 1.5E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_17485 74d2ffa196834addbf02e9c6acb425b1 244 SUPERFAMILY SSF56300 1 224 2.97E-40 T 13-10-2018 RA13_10625 935aa950337ed2fad5b2211c73d9e7fc 146 Hamap MF_00637 Anti-sigma F factor [spoIIAB]. 1 140 35.938 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RA13_10625 935aa950337ed2fad5b2211c73d9e7fc 146 TIGRFAM TIGR01925 spIIAB: anti-sigma F factor 1 137 2.6E-77 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 RA13_10625 935aa950337ed2fad5b2211c73d9e7fc 146 Pfam PF13581 Histidine kinase-like ATPase domain 10 136 2.3E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_10625 935aa950337ed2fad5b2211c73d9e7fc 146 SUPERFAMILY SSF55874 28 135 2.1E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_10625 935aa950337ed2fad5b2211c73d9e7fc 146 Gene3D G3DSA:3.30.565.10 1 143 3.2E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RA13_10625 935aa950337ed2fad5b2211c73d9e7fc 146 SMART SM00387 35 140 7.0E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RA13_03195 9821f4a004ddc9b89c22a6f697e6f34e 102 Gene3D G3DSA:3.40.50.2300 1 102 2.7E-38 T 13-10-2018 RA13_03195 9821f4a004ddc9b89c22a6f697e6f34e 102 TIGRFAM TIGR00853 pts-lac: PTS system, lactose/cellobiose family IIB component 2 93 3.5E-39 T 13-10-2018 IPR013012 Phosphotransferase system, EIIB component, type 3 GO:0008982|GO:0009401 RA13_03195 9821f4a004ddc9b89c22a6f697e6f34e 102 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 93 1.4E-22 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RA13_03195 9821f4a004ddc9b89c22a6f697e6f34e 102 SUPERFAMILY SSF52794 1 98 6.28E-36 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RA13_18620 7aa363bdb9b19acf8e4ea6bf80d1e54c 467 PIRSF PIRSF006060 15 465 1.0E-93 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_18620 7aa363bdb9b19acf8e4ea6bf80d1e54c 467 Pfam PF13520 Amino acid permease 28 440 2.6E-68 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_18620 7aa363bdb9b19acf8e4ea6bf80d1e54c 467 Gene3D G3DSA:1.20.1740.10 22 466 1.8E-130 T 13-10-2018 RA13_18620 7aa363bdb9b19acf8e4ea6bf80d1e54c 467 TIGRFAM TIGR00909 2A0306: amino acid transporter 24 456 5.4E-189 T 13-10-2018 IPR004758 Amino acid transporter RA13_17050 5af9beeaa5bc005a6c0395e999f0fb8c 113 Pfam PF01381 Helix-turn-helix 10 58 6.5E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_17050 5af9beeaa5bc005a6c0395e999f0fb8c 113 SMART SM00530 5 58 4.5E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_17050 5af9beeaa5bc005a6c0395e999f0fb8c 113 Gene3D G3DSA:1.10.260.40 1 109 1.1E-23 T 13-10-2018 RA13_17050 5af9beeaa5bc005a6c0395e999f0fb8c 113 SUPERFAMILY SSF47413 1 64 5.36E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_04555 12034510d387268173c54c8d6b04fe13 131 SUPERFAMILY SSF102546 1 131 2.49E-46 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 RA13_04555 12034510d387268173c54c8d6b04fe13 131 Pfam PF05025 RbsD / FucU transport protein family 1 130 1.8E-48 T 13-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 RA13_04555 12034510d387268173c54c8d6b04fe13 131 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 131 32.035 T 13-10-2018 IPR023064 D-ribose pyranase GO:0016872 RA13_04555 12034510d387268173c54c8d6b04fe13 131 Gene3D G3DSA:3.40.1650.10 8 127 1.1E-38 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 RA13_12265 ffccb0324eafd214149574b16b82c537 208 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 208 28.853 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RA13_12265 ffccb0324eafd214149574b16b82c537 208 Gene3D G3DSA:3.40.50.360 1 208 1.0E-58 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_12265 ffccb0324eafd214149574b16b82c537 208 SUPERFAMILY SSF52218 1 208 4.19E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_12265 ffccb0324eafd214149574b16b82c537 208 Pfam PF02525 Flavodoxin-like fold 3 203 6.1E-43 T 13-10-2018 IPR003680 Flavodoxin-like fold RA13_08680 3471081579b0358c712b98412b6d48b1 342 SUPERFAMILY SSF56112 2 315 3.06E-14 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_08680 3471081579b0358c712b98412b6d48b1 342 Gene3D G3DSA:3.90.1200.10 95 320 7.9E-19 T 13-10-2018 RA13_08680 3471081579b0358c712b98412b6d48b1 342 TIGRFAM TIGR02904 spore_ysxE: spore coat protein YsxE 4 312 7.2E-109 T 13-10-2018 IPR014253 Spore coat protein YsxE RA13_08680 3471081579b0358c712b98412b6d48b1 342 Gene3D G3DSA:3.30.200.20 3 92 7.8E-11 T 13-10-2018 RA13_21305 5feca191d3466fba8e45cc73344eaf00 503 SUPERFAMILY SSF56801 16 501 5.89E-137 T 13-10-2018 RA13_21305 5feca191d3466fba8e45cc73344eaf00 503 Gene3D G3DSA:3.40.50.12780 2 403 1.7E-105 T 13-10-2018 RA13_21305 5feca191d3466fba8e45cc73344eaf00 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 417 490 3.8E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_21305 5feca191d3466fba8e45cc73344eaf00 503 Pfam PF00501 AMP-binding enzyme 19 407 5.7E-98 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_21305 5feca191d3466fba8e45cc73344eaf00 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 163 174 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_21305 5feca191d3466fba8e45cc73344eaf00 503 Gene3D G3DSA:3.30.300.310 404 503 1.1E-29 T 13-10-2018 RA13_03415 de0240a38b3cb83d6dcb9f626320325f 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 62 7.5E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_03415 de0240a38b3cb83d6dcb9f626320325f 214 Gene3D G3DSA:1.10.357.10 1 205 5.0E-22 T 13-10-2018 RA13_03415 de0240a38b3cb83d6dcb9f626320325f 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 3.0E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_03415 de0240a38b3cb83d6dcb9f626320325f 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 3.0E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_03415 de0240a38b3cb83d6dcb9f626320325f 214 SUPERFAMILY SSF46689 5 67 4.27E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_17175 e7be7a9bb9ebe9f2d044ec296333de9e 179 Gene3D G3DSA:3.40.50.300 2 178 1.5E-35 T 13-10-2018 RA13_17175 e7be7a9bb9ebe9f2d044ec296333de9e 179 Pfam PF07931 Chloramphenicol phosphotransferase-like protein 7 169 8.5E-9 T 13-10-2018 IPR012853 Chloramphenicol phosphotransferase-like GO:0005524|GO:0016740 RA13_17175 e7be7a9bb9ebe9f2d044ec296333de9e 179 SUPERFAMILY SSF52540 5 172 5.59E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_03360 c9855e8edaba2c48d879e493db93d468 225 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 2 223 1.1E-98 T 13-10-2018 IPR005261 Conserved hypothetical protein CHP00659 RA13_03360 c9855e8edaba2c48d879e493db93d468 225 Pfam PF04172 LrgB-like family 11 223 6.4E-72 T 13-10-2018 IPR007300 CidB/LrgB family RA13_15770 b4677de0d8dd853dba2b08a8bfa2b68c 403 Pfam PF01098 Cell cycle protein 12 374 6.4E-118 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15770 b4677de0d8dd853dba2b08a8bfa2b68c 403 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 333 357 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_09055 61e83d6ccc50adff3a9dac03fdd1add5 154 SUPERFAMILY SSF50346 84 137 2.2E-6 T 13-10-2018 IPR011033 PRC-barrel-like superfamily RA13_09055 61e83d6ccc50adff3a9dac03fdd1add5 154 Pfam PF05239 PRC-barrel domain 4 56 1.6E-4 T 13-10-2018 IPR027275 PRC-barrel domain RA13_19930 6fef860816eebb7f09e9f262823223d4 180 Pfam PF00583 Acetyltransferase (GNAT) family 61 159 1.9E-9 T 13-10-2018 IPR000182 GNAT domain RA13_19930 6fef860816eebb7f09e9f262823223d4 180 SUPERFAMILY SSF55729 14 166 1.8E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_19930 6fef860816eebb7f09e9f262823223d4 180 Gene3D G3DSA:3.40.630.30 5 179 2.5E-41 T 13-10-2018 RA13_18010 8a841b23abb784a3bd43987b96960d7f 109 Gene3D G3DSA:1.20.1270.360 1 108 2.4E-32 T 13-10-2018 RA13_18010 8a841b23abb784a3bd43987b96960d7f 109 Pfam PF03860 Domain of Unknown Function (DUF326) 32 51 1.2E-4 T 13-10-2018 IPR005560 Protein of unknown function DUF326 RA13_14740 a405b6ef01f6d502156af1cf2045f6b3 428 SUPERFAMILY SSF63411 285 426 5.24E-19 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RA13_14740 a405b6ef01f6d502156af1cf2045f6b3 428 Gene3D G3DSA:3.30.830.10 239 426 3.9E-39 T 13-10-2018 RA13_14740 a405b6ef01f6d502156af1cf2045f6b3 428 Pfam PF00675 Insulinase (Peptidase family M16) 65 176 2.5E-18 T 13-10-2018 IPR011765 Peptidase M16, N-terminal RA13_14740 a405b6ef01f6d502156af1cf2045f6b3 428 SUPERFAMILY SSF63411 15 220 2.1E-42 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RA13_14740 a405b6ef01f6d502156af1cf2045f6b3 428 Gene3D G3DSA:3.30.830.10 8 238 2.8E-60 T 13-10-2018 RA13_14740 a405b6ef01f6d502156af1cf2045f6b3 428 Pfam PF05193 Peptidase M16 inactive domain 183 361 6.2E-16 T 13-10-2018 IPR007863 Peptidase M16, C-terminal RA13_01690 d5eef44c3c6270f791d8f829ac887b1f 196 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 185 2.0E-82 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01690 d5eef44c3c6270f791d8f829ac887b1f 196 Gene3D G3DSA:3.40.50.880 1 195 4.1E-73 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_01690 d5eef44c3c6270f791d8f829ac887b1f 196 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 186 37.526 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01690 d5eef44c3c6270f791d8f829ac887b1f 196 ProSitePatterns PS01236 PdxT/SNO family family signature. 41 51 - T 13-10-2018 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01690 d5eef44c3c6270f791d8f829ac887b1f 196 SUPERFAMILY SSF52317 3 190 1.49E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like RA13_01690 d5eef44c3c6270f791d8f829ac887b1f 196 Pfam PF01174 SNO glutamine amidotransferase family 6 188 3.3E-82 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_01690 d5eef44c3c6270f791d8f829ac887b1f 196 PIRSF PIRSF005639 1 191 4.3E-74 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 RA13_18970 2c0ebf04744ab5eed27af21a02dff3fb 259 Pfam PF07070 SpoOM protein 4 212 4.3E-71 T 13-10-2018 IPR009776 Sporulation stage 0, protein M RA13_14610 50df8b25f1822689d3fc9e1c00b882e8 82 Gene3D G3DSA:1.10.1200.10 1 79 4.3E-21 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14610 50df8b25f1822689d3fc9e1c00b882e8 82 SUPERFAMILY SSF47336 1 79 1.57E-13 T 13-10-2018 IPR036736 ACP-like superfamily RA13_14610 50df8b25f1822689d3fc9e1c00b882e8 82 Pfam PF00550 Phosphopantetheine attachment site 9 73 8.1E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain RA13_20180 8f2ed40f23ebdf98c7dd096eda36ebea 162 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 33.785 T 13-10-2018 IPR033747 Class I PurE RA13_20180 8f2ed40f23ebdf98c7dd096eda36ebea 162 Gene3D G3DSA:3.40.50.7700 1 162 1.7E-73 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RA13_20180 8f2ed40f23ebdf98c7dd096eda36ebea 162 SUPERFAMILY SSF52255 4 160 6.15E-70 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RA13_20180 8f2ed40f23ebdf98c7dd096eda36ebea 162 PIRSF PIRSF001338 1 162 2.3E-70 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 RA13_20180 8f2ed40f23ebdf98c7dd096eda36ebea 162 Pfam PF00731 AIR carboxylase 5 152 3.3E-66 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RA13_20180 8f2ed40f23ebdf98c7dd096eda36ebea 162 SMART SM01001 3 154 7.7E-109 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RA13_20180 8f2ed40f23ebdf98c7dd096eda36ebea 162 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 161 5.7E-69 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RA13_11380 47a1c3954c03b8a47743374e3d96422a 275 Pfam PF04962 KduI/IolB family 26 267 1.4E-37 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 RA13_11380 47a1c3954c03b8a47743374e3d96422a 275 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 275 55.47 T 13-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 RA13_11380 47a1c3954c03b8a47743374e3d96422a 275 PIRSF PIRSF006625 1 275 2.1E-134 T 13-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 RA13_11380 47a1c3954c03b8a47743374e3d96422a 275 Gene3D G3DSA:2.60.120.10 10 260 3.9E-113 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_11380 47a1c3954c03b8a47743374e3d96422a 275 SUPERFAMILY SSF51182 1 259 1.75E-101 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_11380 47a1c3954c03b8a47743374e3d96422a 275 Gene3D G3DSA:2.60.120.520 30 141 3.9E-113 T 13-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 RA13_04310 d5e51297499b042b371a7a341438f9c2 354 Gene3D G3DSA:1.25.40.10 1 353 1.9E-75 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_04310 d5e51297499b042b371a7a341438f9c2 354 SUPERFAMILY SSF48452 105 303 2.81E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_04310 d5e51297499b042b371a7a341438f9c2 354 SMART SM00028 211 244 14.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_04310 d5e51297499b042b371a7a341438f9c2 354 SMART SM00028 130 163 53.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_04310 d5e51297499b042b371a7a341438f9c2 354 SMART SM00028 171 204 220.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 PIRSF PIRSF004862 1 535 3.3E-110 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 Gene3D G3DSA:3.30.300.30 132 223 6.1E-9 T 13-10-2018 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 1 535 1.9E-195 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 PRINTS PR01009 Flagellar M-ring protein signature 154 168 8.4E-26 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 PRINTS PR01009 Flagellar M-ring protein signature 198 216 8.4E-26 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 PRINTS PR01009 Flagellar M-ring protein signature 349 373 8.4E-26 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 PRINTS PR01009 Flagellar M-ring protein signature 122 140 8.4E-26 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 PRINTS PR01009 Flagellar M-ring protein signature 270 288 8.4E-26 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 RA13_15080 3575646ccb3a70d90eb416cee5312609 535 Pfam PF01514 Secretory protein of YscJ/FliF family 31 221 1.2E-61 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF RA13_15080 3575646ccb3a70d90eb416cee5312609 535 Pfam PF08345 Flagellar M-ring protein C-terminal 257 402 4.0E-22 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal RA13_09165 16ccb89f41acd0ee83109ea782bf0119 231 Pfam PF01048 Phosphorylase superfamily 2 227 4.9E-52 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RA13_09165 16ccb89f41acd0ee83109ea782bf0119 231 Gene3D G3DSA:3.40.50.1580 1 231 3.2E-70 T 13-10-2018 RA13_09165 16ccb89f41acd0ee83109ea782bf0119 231 SUPERFAMILY SSF53167 1 229 2.62E-72 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RA13_09165 16ccb89f41acd0ee83109ea782bf0119 231 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 47.523 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_09165 16ccb89f41acd0ee83109ea782bf0119 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 230 6.5E-132 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 RA13_06060 93ed606ec512ab139a3d436e157aa8bc 106 Gene3D G3DSA:3.40.30.10 1 100 1.6E-15 T 13-10-2018 RA13_06060 93ed606ec512ab139a3d436e157aa8bc 106 Pfam PF00085 Thioredoxin 11 84 1.2E-10 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RA13_06060 93ed606ec512ab139a3d436e157aa8bc 106 SUPERFAMILY SSF52833 11 99 7.58E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_17795 7e7601b9a42c0ed81e95c149284ecce8 612 Pfam PF02219 Methylenetetrahydrofolate reductase 313 572 1.6E-27 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RA13_17795 7e7601b9a42c0ed81e95c149284ecce8 612 Gene3D G3DSA:3.20.20.330 2 293 1.8E-85 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RA13_17795 7e7601b9a42c0ed81e95c149284ecce8 612 SUPERFAMILY SSF51730 313 599 4.51E-66 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like RA13_17795 7e7601b9a42c0ed81e95c149284ecce8 612 Gene3D G3DSA:3.20.20.220 310 597 3.3E-49 T 13-10-2018 RA13_17795 7e7601b9a42c0ed81e95c149284ecce8 612 SUPERFAMILY SSF82282 2 359 6.28E-97 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RA13_17795 7e7601b9a42c0ed81e95c149284ecce8 612 Pfam PF02574 Homocysteine S-methyltransferase 12 280 7.2E-57 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RA13_17975 d43d3092586452c8520390c359c1e4b3 72 Pfam PF10676 Spore germination protein gerPA/gerPF 1 71 6.0E-29 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF RA13_03185 14fbbd3eb1155d63a668e6b37b4dd9b9 196 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 9 195 6.9E-81 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RA13_03185 14fbbd3eb1155d63a668e6b37b4dd9b9 196 SUPERFAMILY SSF50486 7 196 5.18E-63 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RA13_03185 14fbbd3eb1155d63a668e6b37b4dd9b9 196 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 10 195 33.943 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RA13_03185 14fbbd3eb1155d63a668e6b37b4dd9b9 196 Gene3D G3DSA:3.10.300.10 3 196 8.3E-63 T 13-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RA13_03185 14fbbd3eb1155d63a668e6b37b4dd9b9 196 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 11 192 1.3E-59 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RA13_11555 0490391bbd239035c04986cd7d5dc6b0 207 Pfam PF01553 Acyltransferase 60 142 1.2E-5 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RA13_11555 0490391bbd239035c04986cd7d5dc6b0 207 SUPERFAMILY SSF69593 11 140 1.12E-9 T 13-10-2018 RA13_00865 5b0cfb51da4de6e735fd6856769795e9 255 SUPERFAMILY SSF53335 52 228 1.79E-23 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_00865 5b0cfb51da4de6e735fd6856769795e9 255 Gene3D G3DSA:3.40.50.150 49 240 1.0E-18 T 13-10-2018 RA13_00865 5b0cfb51da4de6e735fd6856769795e9 255 Pfam PF08241 Methyltransferase domain 63 158 1.2E-12 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 Pfam PF00166 Chaperonin 10 Kd subunit 2 93 3.7E-36 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 Gene3D G3DSA:2.30.33.40 1 93 1.5E-38 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 SMART SM00883 1 93 6.3E-56 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 PRINTS PR00297 10kDa chaperonin signature 59 71 3.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 PRINTS PR00297 10kDa chaperonin signature 80 93 3.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 PRINTS PR00297 10kDa chaperonin signature 2 17 3.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 PRINTS PR00297 10kDa chaperonin signature 24 45 3.5E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 ProSitePatterns PS00681 Chaperonins cpn10 signature. 2 26 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 Hamap MF_00580 10 kDa chaperonin [groS]. 1 94 27.025 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RA13_20395 7659a13e86a9ec574d293d9e4d3a32f0 94 SUPERFAMILY SSF50129 2 93 1.41E-34 T 13-10-2018 IPR011032 GroES-like superfamily RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 89 104 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 PRINTS PR00175 Sodium/alanine symporter signature 179 197 3.4E-60 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 PRINTS PR00175 Sodium/alanine symporter signature 89 111 3.4E-60 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 PRINTS PR00175 Sodium/alanine symporter signature 298 316 3.4E-60 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 PRINTS PR00175 Sodium/alanine symporter signature 401 421 3.4E-60 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 PRINTS PR00175 Sodium/alanine symporter signature 207 226 3.4E-60 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 PRINTS PR00175 Sodium/alanine symporter signature 341 363 3.4E-60 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 TIGRFAM TIGR00835 agcS: amino acid carrier protein 17 432 3.3E-161 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_12665 4bf5c37d145ce9aa4c9f85a3477160e2 472 Pfam PF01235 Sodium:alanine symporter family 52 444 7.8E-157 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RA13_18360 8bbb4ab5d161bea7d939994105c3bc6d 408 Gene3D G3DSA:3.60.21.10 2 252 6.4E-58 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_18360 8bbb4ab5d161bea7d939994105c3bc6d 408 SUPERFAMILY SSF56300 5 282 5.32E-54 T 13-10-2018 RA13_18360 8bbb4ab5d161bea7d939994105c3bc6d 408 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 6 238 4.5E-14 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 RA13_18360 8bbb4ab5d161bea7d939994105c3bc6d 408 PIRSF PIRSF033091 2 408 9.2E-153 T 13-10-2018 IPR014576 Predicted phosphoesterase, YhaO type RA13_03295 025a52f84b1b151991e76a1cbda53e95 456 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 2 448 1.1E-177 T 13-10-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 RA13_03295 025a52f84b1b151991e76a1cbda53e95 456 SUPERFAMILY SSF55604 5 79 6.15E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_03295 025a52f84b1b151991e76a1cbda53e95 456 Pfam PF00367 phosphotransferase system, EIIB 7 40 5.8E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_03295 025a52f84b1b151991e76a1cbda53e95 456 Pfam PF02378 Phosphotransferase system, EIIC 106 392 5.2E-44 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_03295 025a52f84b1b151991e76a1cbda53e95 456 Gene3D G3DSA:3.30.1360.60 2 77 1.6E-22 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 RA13_03295 025a52f84b1b151991e76a1cbda53e95 456 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 18 35 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 RA13_08945 121d912f92d64aaef31e568c75f96465 219 Pfam PF04239 Protein of unknown function (DUF421) 89 193 1.0E-36 T 13-10-2018 IPR007353 Protein of unknown function DUF421 RA13_08945 121d912f92d64aaef31e568c75f96465 219 Gene3D G3DSA:3.30.240.20 160 217 2.1E-15 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_08945 121d912f92d64aaef31e568c75f96465 219 Gene3D G3DSA:3.30.240.20 81 154 4.5E-25 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RA13_16310 b083e26deaea2ac3e6301d1d6c6f9ab2 103 SUPERFAMILY SSF159173 3 97 3.92E-33 T 13-10-2018 IPR023105 YkvR-like superfamily RA13_16310 b083e26deaea2ac3e6301d1d6c6f9ab2 103 Gene3D G3DSA:2.40.30.80 1 94 1.3E-30 T 13-10-2018 IPR023105 YkvR-like superfamily RA13_16310 b083e26deaea2ac3e6301d1d6c6f9ab2 103 Pfam PF11514 Protein of unknown function (DUF3219) 5 96 8.3E-33 T 13-10-2018 IPR021596 Protein of unknown function DUF3219 RA13_14470 792aa819c4897147f5fcd580a31bdb72 206 Gene3D G3DSA:3.90.79.10 1 206 8.9E-60 T 13-10-2018 RA13_09730 e02d7c40f4756613019c51a944df1301 120 SUPERFAMILY SSF46626 8 119 3.01E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RA13_09730 e02d7c40f4756613019c51a944df1301 120 Gene3D G3DSA:1.10.760.10 50 120 1.8E-22 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 RA13_09730 e02d7c40f4756613019c51a944df1301 120 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 49 116 4.1E-11 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_09730 e02d7c40f4756613019c51a944df1301 120 PIRSF PIRSF000025 1 120 1.6E-39 T 13-10-2018 IPR012218 Cytochrome c, Bacillus subtilis c550-related GO:0005506|GO:0009055|GO:0016021|GO:0020037 RA13_21295 e55e36373bf5322374725c310349ca4f 286 Gene3D G3DSA:3.40.50.720 2 284 4.4E-87 T 13-10-2018 RA13_21295 e55e36373bf5322374725c310349ca4f 286 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 52 281 6.9E-62 T 13-10-2018 RA13_21295 e55e36373bf5322374725c310349ca4f 286 SUPERFAMILY SSF51735 41 281 8.82E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 4.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 4.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 4.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 178 206 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 3.4E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 229 3.4E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 181 3.4E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 210 3.4E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 266 3.4E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_21295 e55e36373bf5322374725c310349ca4f 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 44 61 3.4E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05070 41362c64a08386cd523c7f2f78a04391 244 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 6 237 1.0E-85 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 RA13_05070 41362c64a08386cd523c7f2f78a04391 244 SUPERFAMILY SSF51366 5 240 1.28E-68 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_05070 41362c64a08386cd523c7f2f78a04391 244 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 5 241 36.628 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 RA13_05070 41362c64a08386cd523c7f2f78a04391 244 Pfam PF00977 Histidine biosynthesis protein 6 234 3.3E-77 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RA13_05070 41362c64a08386cd523c7f2f78a04391 244 Gene3D G3DSA:3.20.20.70 1 243 4.2E-87 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_10860 7759d9f1d53170dc292717f833d69958 240 SMART SM00862 158 235 7.4E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_10860 7759d9f1d53170dc292717f833d69958 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 235 1.3E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RA13_10860 7759d9f1d53170dc292717f833d69958 240 Gene3D G3DSA:1.10.10.10 137 239 8.7E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_10860 7759d9f1d53170dc292717f833d69958 240 Gene3D G3DSA:3.40.50.2300 1 136 1.4E-42 T 13-10-2018 RA13_10860 7759d9f1d53170dc292717f833d69958 240 Pfam PF00072 Response regulator receiver domain 9 117 8.2E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_10860 7759d9f1d53170dc292717f833d69958 240 SUPERFAMILY SSF52172 7 193 8.82E-44 T 13-10-2018 IPR011006 CheY-like superfamily RA13_10860 7759d9f1d53170dc292717f833d69958 240 SMART SM00448 7 117 1.2E-47 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 PIRSF PIRSF000850 24 204 0.0061 T 13-10-2018 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 PIRSF PIRSF000850 228 390 8.8E-4 T 13-10-2018 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 SMART SM00155 141 168 5.4E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 SMART SM00155 312 339 3.0E-7 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 Pfam PF13091 PLD-like domain 58 170 1.5E-11 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 Pfam PF13091 PLD-like domain 241 363 6.6E-28 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 SUPERFAMILY SSF56024 231 383 1.61E-40 T 13-10-2018 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 Gene3D G3DSA:3.30.870.10 224 397 4.7E-29 T 13-10-2018 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 37 397 5.2E-97 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 SUPERFAMILY SSF56024 41 206 4.08E-37 T 13-10-2018 RA13_03865 148147fa8252a734aaa22c47c6c25fd7 399 Gene3D G3DSA:3.30.870.10 36 223 2.2E-35 T 13-10-2018 RA13_11440 ee96fba12cc68789d2231be2dbe3820d 85 Pfam PF10752 Protein of unknown function (DUF2533) 3 84 1.8E-41 T 13-10-2018 IPR019688 Protein of unknown function DUF2533 RA13_20065 23c83eaa921f5a101f9cae47f679fe26 333 SUPERFAMILY SSF56112 14 306 1.06E-55 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_20065 23c83eaa921f5a101f9cae47f679fe26 333 Gene3D G3DSA:3.90.1200.10 117 316 2.7E-22 T 13-10-2018 RA13_20065 23c83eaa921f5a101f9cae47f679fe26 333 Pfam PF01636 Phosphotransferase enzyme family 30 241 2.8E-27 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase RA13_21495 4fadea3ea3df9edd6a395ff75d247dec 315 Gene3D G3DSA:1.10.3470.10 5 314 2.1E-59 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_21495 4fadea3ea3df9edd6a395ff75d247dec 315 Pfam PF01032 FecCD transport family 33 310 1.8E-55 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_21495 4fadea3ea3df9edd6a395ff75d247dec 315 SUPERFAMILY SSF81345 8 310 1.7E-61 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_15965 dcd84361a8f635609810ba4a57b0a5ff 44 Pfam PF17447 Uncharacterized protein YkpC 29 42 1.7E-6 T 13-10-2018 IPR035379 Uncharacterized protein YkpC RA13_01530 5a40122c9ce2f7f2112a6f5f20f1b774 96 SMART SM00966 10 53 6.6E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_01530 5a40122c9ce2f7f2112a6f5f20f1b774 96 Gene3D G3DSA:2.10.260.10 1 53 2.8E-27 T 13-10-2018 RA13_01530 5a40122c9ce2f7f2112a6f5f20f1b774 96 SUPERFAMILY SSF89447 3 54 1.31E-16 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily RA13_01530 5a40122c9ce2f7f2112a6f5f20f1b774 96 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 10 52 9.3E-12 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_01530 5a40122c9ce2f7f2112a6f5f20f1b774 96 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 10 51 4.8E-11 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 RA13_06630 c305d8229955477f9cf685aa7cc81f10 300 SUPERFAMILY SSF48576 33 286 4.8E-31 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_06630 c305d8229955477f9cf685aa7cc81f10 300 Gene3D G3DSA:1.10.600.10 16 289 2.9E-27 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_06630 c305d8229955477f9cf685aa7cc81f10 300 Pfam PF00348 Polyprenyl synthetase 39 218 3.5E-11 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RA13_18855 f7bcd98e27c3a2e6afd0672a102626d1 221 Pfam PF13533 Biotin-lipoyl like 59 89 7.8E-7 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RA13_18855 f7bcd98e27c3a2e6afd0672a102626d1 221 Gene3D G3DSA:2.40.30.170 109 221 8.4E-33 T 13-10-2018 RA13_18855 f7bcd98e27c3a2e6afd0672a102626d1 221 SUPERFAMILY SSF51230 50 122 1.57E-11 T 13-10-2018 IPR011053 Single hybrid motif RA13_18855 f7bcd98e27c3a2e6afd0672a102626d1 221 Pfam PF13437 HlyD family secretion protein 96 212 1.8E-15 T 13-10-2018 RA13_18855 f7bcd98e27c3a2e6afd0672a102626d1 221 Gene3D G3DSA:2.40.50.100 59 98 3.3E-6 T 13-10-2018 RA13_18545 a9cc5f3bde1aee41834e9b22bad75591 301 SUPERFAMILY SSF51735 2 280 1.2E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_18545 a9cc5f3bde1aee41834e9b22bad75591 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 217 9.6E-27 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RA13_18545 a9cc5f3bde1aee41834e9b22bad75591 301 Gene3D G3DSA:3.40.50.720 1 285 4.0E-48 T 13-10-2018 RA13_13495 31913db4a436d963b3ed3404fa5e2de5 421 Pfam PF06838 Methionine gamma-lyase 13 415 9.2E-211 T 13-10-2018 IPR009651 Putative methionine gamma-lyase RA13_13495 31913db4a436d963b3ed3404fa5e2de5 421 Gene3D G3DSA:3.40.640.10 58 272 3.0E-182 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_13495 31913db4a436d963b3ed3404fa5e2de5 421 SUPERFAMILY SSF53383 55 399 3.74E-47 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_13495 31913db4a436d963b3ed3404fa5e2de5 421 Gene3D G3DSA:3.90.1150.60 17 412 3.0E-182 T 13-10-2018 RA13_08650 5a9d9e2f5e06fa432b18a0da43089b4b 276 Pfam PF01578 Cytochrome C assembly protein 67 271 3.0E-39 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RA13_20265 f1d891a4efd1ee7a33dcba308ca733d2 271 Pfam PF00561 alpha/beta hydrolase fold 22 127 7.6E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_20265 f1d891a4efd1ee7a33dcba308ca733d2 271 Gene3D G3DSA:3.40.50.1820 5 266 4.8E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_20265 f1d891a4efd1ee7a33dcba308ca733d2 271 SUPERFAMILY SSF53474 1 266 1.66E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 Gene3D G3DSA:3.40.50.720 2 262 3.2E-68 T 13-10-2018 RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 Pfam PF00106 short chain dehydrogenase 4 193 1.5E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 183 0.0047 T 13-10-2018 RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 SUPERFAMILY SSF51735 3 243 3.64E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 7.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 7.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 7.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 7.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_05970 f322c5c13839235afc6b8f0228e7a830 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 7.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_15250 9460f6cedc54dd43a6b617256e70544e 299 TIGRFAM TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit 1 298 8.2E-162 T 13-10-2018 IPR004642 Serine dehydratase, alpha subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RA13_15250 9460f6cedc54dd43a6b617256e70544e 299 Pfam PF03313 Serine dehydratase alpha chain 14 274 1.9E-77 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit RA13_00140 d11d5fc7d80740e3b9dae74a410d1b88 355 Pfam PF11611 Domain of unknown function (DUF4352) 36 149 2.8E-23 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 RA13_00140 d11d5fc7d80740e3b9dae74a410d1b88 355 Gene3D G3DSA:2.60.40.1240 35 165 1.6E-18 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily RA13_00140 d11d5fc7d80740e3b9dae74a410d1b88 355 Pfam PF17118 Domain of unknown function (DUF5105) 165 353 1.4E-67 T 13-10-2018 IPR031343 Domain of unknown function DUF5105 RA13_13005 eadad1f8d4937f29311b25fd63568e76 162 SUPERFAMILY SSF51182 5 160 8.5E-32 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily RA13_13005 eadad1f8d4937f29311b25fd63568e76 162 Gene3D G3DSA:2.60.120.10 1 161 4.9E-61 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_13005 eadad1f8d4937f29311b25fd63568e76 162 Pfam PF05995 Cysteine dioxygenase type I 43 153 1.2E-19 T 13-10-2018 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|Reactome: R-HSA-1614558 RA13_06665 cdddfae9ac06cd2b14acd212de81cfec 158 Pfam PF01899 Na+/H+ ion antiporter subunit 8 156 1.8E-44 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RA13_06665 cdddfae9ac06cd2b14acd212de81cfec 158 PIRSF PIRSF019239 1 158 1.0E-51 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RA13_11945 ef00023db75ea4a88e220555f6a3b697 118 SUPERFAMILY SSF89064 1 63 1.29E-7 T 13-10-2018 IPR036173 G39, N-terminal domain superfamily RA13_11945 ef00023db75ea4a88e220555f6a3b697 118 Pfam PF11417 Loader and inhibitor of phage G40P 1 62 1.2E-7 T 13-10-2018 IPR024424 Replicative helicase inhibitor G39P, N-terminal RA13_11945 ef00023db75ea4a88e220555f6a3b697 118 Gene3D G3DSA:1.10.8.200 1 64 3.1E-14 T 13-10-2018 RA13_03070 65f653129f6054a51461d55856b4e3f6 339 Gene3D G3DSA:3.40.50.720 3 273 1.5E-150 T 13-10-2018 RA13_03070 65f653129f6054a51461d55856b4e3f6 339 Gene3D G3DSA:3.90.25.10 193 328 1.5E-150 T 13-10-2018 RA13_03070 65f653129f6054a51461d55856b4e3f6 339 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 334 5.4E-152 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 RA13_03070 65f653129f6054a51461d55856b4e3f6 339 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 323 3.8E-64 T 13-10-2018 IPR016040 NAD(P)-binding domain RA13_03070 65f653129f6054a51461d55856b4e3f6 339 SUPERFAMILY SSF51735 1 331 4.29E-102 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_03075 d2286b4e504089c4228e5f9714729ffb 212 Gene3D G3DSA:2.60.40.1240 71 212 1.1E-42 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily RA13_03075 d2286b4e504089c4228e5f9714729ffb 212 Pfam PF11611 Domain of unknown function (DUF4352) 78 206 9.9E-15 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 RA13_05120 b102786c0fcba0951d1d99155d82eed0 155 Pfam PF00293 NUDIX domain 4 122 1.2E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RA13_05120 b102786c0fcba0951d1d99155d82eed0 155 PRINTS PR00502 NUDIX hydrolase family signature 26 40 9.9E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RA13_05120 b102786c0fcba0951d1d99155d82eed0 155 PRINTS PR00502 NUDIX hydrolase family signature 40 55 9.9E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RA13_05120 b102786c0fcba0951d1d99155d82eed0 155 SUPERFAMILY SSF55811 4 128 5.82E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RA13_05120 b102786c0fcba0951d1d99155d82eed0 155 Gene3D G3DSA:3.90.79.10 1 153 3.1E-41 T 13-10-2018 RA13_20925 68e3ec7a93b6f5d0964b28a5886bf305 340 SUPERFAMILY SSF52980 209 319 1.13E-19 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RA13_20925 68e3ec7a93b6f5d0964b28a5886bf305 340 Pfam PF04471 Restriction endonuclease 204 316 3.1E-28 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RA13_20925 68e3ec7a93b6f5d0964b28a5886bf305 340 Gene3D G3DSA:3.40.1350.10 207 320 5.9E-7 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RA13_07545 bec7d538a918f45ba4c584019c599bb4 397 Pfam PF07690 Major Facilitator Superfamily 8 265 2.5E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_07545 bec7d538a918f45ba4c584019c599bb4 397 Gene3D G3DSA:1.20.1250.20 190 393 8.5E-20 T 13-10-2018 RA13_07545 bec7d538a918f45ba4c584019c599bb4 397 Gene3D G3DSA:1.20.1250.20 3 189 1.3E-23 T 13-10-2018 RA13_07545 bec7d538a918f45ba4c584019c599bb4 397 SUPERFAMILY SSF103473 3 383 3.53E-55 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_13250 a4a9bb2562120ef2d3d554876e5489bb 27 Pfam PF16935 Putative Holin-like Toxin (Hol-Tox) 2 24 7.5E-7 T 13-10-2018 IPR031616 Putative Holin-like Toxin (Hol-Tox) RA13_08280 ce8a7f53f3c7696ff8b51288290a0a1a 89 Pfam PF06961 Protein of unknown function (DUF1294) 11 65 4.7E-23 T 13-10-2018 IPR010718 Protein of unknown function DUF1294 RA13_08435 502d60830956dcb0840333f0caee907e 134 Pfam PF03994 Domain of Unknown Function (DUF350) 15 68 9.1E-14 T 13-10-2018 IPR007140 Protein of unknown function DUF350 RA13_08435 502d60830956dcb0840333f0caee907e 134 Pfam PF03994 Domain of Unknown Function (DUF350) 80 134 6.0E-16 T 13-10-2018 IPR007140 Protein of unknown function DUF350 RA13_20895 69d89b7dd58d161a87f0641c3f6d2075 367 Gene3D G3DSA:3.40.50.1100 100 196 1.4E-93 T 13-10-2018 RA13_20895 69d89b7dd58d161a87f0641c3f6d2075 367 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 68 361 1.0E-62 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RA13_20895 69d89b7dd58d161a87f0641c3f6d2075 367 Gene3D G3DSA:3.40.50.1100 51 366 1.4E-93 T 13-10-2018 RA13_20895 69d89b7dd58d161a87f0641c3f6d2075 367 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 92 105 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RA13_20895 69d89b7dd58d161a87f0641c3f6d2075 367 SUPERFAMILY SSF53686 4 365 3.67E-87 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RA13_13830 33a9036728f95b6eb2ff5913a95ad110 273 Pfam PF05908 Poly-gamma-glutamate hydrolase 68 256 1.8E-69 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase RA13_13830 33a9036728f95b6eb2ff5913a95ad110 273 Gene3D G3DSA:3.40.630.100 62 269 2.6E-63 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily RA13_00120 28112edcce8b778add1a5dad662d5515 167 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 95 164 2.0E-20 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 RA13_00120 28112edcce8b778add1a5dad662d5515 167 Gene3D G3DSA:3.30.1380.10 28 164 6.4E-43 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RA13_00120 28112edcce8b778add1a5dad662d5515 167 SUPERFAMILY SSF55166 43 165 5.23E-33 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RA13_17760 7c136708f2a57b2a82d9d277aaafeea0 119 Gene3D G3DSA:2.60.40.2360 1 119 1.6E-48 T 13-10-2018 IPR038144 Intracellular proteinase inhibitor RA13_17760 7c136708f2a57b2a82d9d277aaafeea0 119 ProDom PD076312 INHIBITOR INTRACELLULAR PROTEINASE PRECURSOR SIGNAL DOMAIN SLH S-LAYER PROTEASE BSUPI 1 119 3.0E-57 T 13-10-2018 IPR020481 Intracellular proteinase inhibitor BsuPI RA13_17760 7c136708f2a57b2a82d9d277aaafeea0 119 Pfam PF12690 Intracellular proteinase inhibitor 19 95 2.4E-28 T 13-10-2018 IPR020481 Intracellular proteinase inhibitor BsuPI RA13_02290 286e6f1a910562e70ef7a9d61b611d97 393 Gene3D G3DSA:3.40.210.20 160 336 5.6E-46 T 13-10-2018 RA13_02290 286e6f1a910562e70ef7a9d61b611d97 393 Gene3D G3DSA:2.60.40.2490 213 376 5.6E-46 T 13-10-2018 RA13_02290 286e6f1a910562e70ef7a9d61b611d97 393 Pfam PF15515 MvaI/BcnI restriction endonuclease family 166 385 1.2E-41 T 13-10-2018 IPR029127 MvaI/BcnI restriction endonuclease RA13_08495 85676c44bf4d8a3e662db9f956692c5b 202 TIGRFAM TIGR02046 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 5 202 9.4E-71 T 13-10-2018 IPR011138 Succinate dehydrogenase cytochrome b558 subunit RA13_08495 85676c44bf4d8a3e662db9f956692c5b 202 SUPERFAMILY SSF81343 4 201 1.83E-60 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08495 85676c44bf4d8a3e662db9f956692c5b 202 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 91 192 8.6E-13 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08495 85676c44bf4d8a3e662db9f956692c5b 202 Gene3D G3DSA:1.20.1300.10 2 202 2.1E-48 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RA13_08495 85676c44bf4d8a3e662db9f956692c5b 202 PIRSF PIRSF000170 1 202 8.3E-104 T 13-10-2018 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute RA13_06675 076e10c131b89e0ae7ba46de9bc15c51 113 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 107 2.3E-31 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RA13_06805 3820d773ba69af26cbf2d4dfc4b4640c 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_06805 3820d773ba69af26cbf2d4dfc4b4640c 387 SUPERFAMILY SSF56796 1 385 2.75E-118 T 13-10-2018 RA13_06805 3820d773ba69af26cbf2d4dfc4b4640c 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 368 2.5E-103 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RA13_06805 3820d773ba69af26cbf2d4dfc4b4640c 387 Gene3D G3DSA:1.20.1090.10 185 386 1.1E-47 T 13-10-2018 RA13_06805 3820d773ba69af26cbf2d4dfc4b4640c 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RA13_06805 3820d773ba69af26cbf2d4dfc4b4640c 387 Gene3D G3DSA:3.40.50.1970 1 184 2.5E-58 T 13-10-2018 RA13_09980 ff86ea8b3e6f406972860157a54f9977 146 PIRSF PIRSF021292 5 146 8.6E-41 T 13-10-2018 IPR016785 ComG operon protein 4 GO:0030420 RA13_04325 3a0781d53ac575b640a8ae2a365325ae 136 Pfam PF14183 YwpF-like protein 2 135 8.7E-49 T 13-10-2018 IPR025573 YwpF-like protein RA13_15860 84ddaf89ba6f7091167cc04fdea420aa 88 Pfam PF05256 Uncharacterised protein family (UPF0223) 2 85 2.5E-37 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 RA13_15860 84ddaf89ba6f7091167cc04fdea420aa 88 PIRSF PIRSF037260 1 88 3.6E-39 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 RA13_15860 84ddaf89ba6f7091167cc04fdea420aa 88 Hamap MF_01041 UPF0223 protein . 1 88 25.546 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 RA13_15860 84ddaf89ba6f7091167cc04fdea420aa 88 Gene3D G3DSA:1.10.220.80 12 88 1.2E-29 T 13-10-2018 IPR023324 BH2638-like superfamily RA13_15860 84ddaf89ba6f7091167cc04fdea420aa 88 SUPERFAMILY SSF158504 4 87 2.62E-33 T 13-10-2018 IPR023324 BH2638-like superfamily RA13_15860 84ddaf89ba6f7091167cc04fdea420aa 88 ProDom PD062738 UPF0223 FAMILY UNCHARACTERISED CYTOSOLIC SUPERFAMILY YKTA LMO1058/LIN1050 INOSITOL MW0980 M6_SPY0948 1 88 4.0E-39 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 RA13_10810 0fa4fe88bb9b6c80d6c54f7804b1e0b3 251 Gene3D G3DSA:1.10.10.580 181 244 7.9E-5 T 13-10-2018 IPR023093 ScpA-like, C-terminal RA13_10810 0fa4fe88bb9b6c80d6c54f7804b1e0b3 251 Pfam PF02616 Segregation and condensation protein ScpA 21 244 1.4E-79 T 13-10-2018 IPR003768 Segregation and condensation protein A RA13_10810 0fa4fe88bb9b6c80d6c54f7804b1e0b3 251 Hamap MF_01805 Segregation and condensation protein A [scpA]. 4 246 27.708 T 13-10-2018 IPR003768 Segregation and condensation protein A RA13_09930 ea95d7f1c27acfd5d9ade5d8006b11f2 81 ProDom PD059814 YQGY TRANSMEMBRANE MEMBRANE PRECURSOR BH2821 SIGNAL 1 79 9.0E-38 T 13-10-2018 IPR020254 Protein of unknown function DUF2626 RA13_09930 ea95d7f1c27acfd5d9ade5d8006b11f2 81 Pfam PF11117 Protein of unknown function (DUF2626) 1 74 4.8E-37 T 13-10-2018 IPR020254 Protein of unknown function DUF2626 RA13_12175 62478228b298d81df7de869719f1cd66 452 Pfam PF01554 MatE 20 180 7.4E-36 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_12175 62478228b298d81df7de869719f1cd66 452 Pfam PF01554 MatE 247 408 3.4E-38 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_12175 62478228b298d81df7de869719f1cd66 452 PIRSF PIRSF006603 1 451 1.4E-69 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_12175 62478228b298d81df7de869719f1cd66 452 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 421 5.3E-110 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RA13_07705 77e63e4215d7510d1ccb3f27f77f2884 309 PIRSF PIRSF012560 1 309 1.2E-122 T 13-10-2018 IPR012397 Pullulan 6-glucanohydrolase RA13_04095 35b50e8acc8c88a7f4a85874769f1a26 227 Pfam PF00092 von Willebrand factor type A domain 36 219 4.4E-23 T 13-10-2018 IPR002035 von Willebrand factor, type A RA13_04095 35b50e8acc8c88a7f4a85874769f1a26 227 SMART SM00327 34 222 3.9E-19 T 13-10-2018 IPR002035 von Willebrand factor, type A RA13_04095 35b50e8acc8c88a7f4a85874769f1a26 227 SUPERFAMILY SSF53300 26 219 1.39E-28 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_04095 35b50e8acc8c88a7f4a85874769f1a26 227 Gene3D G3DSA:3.40.50.410 28 227 4.3E-34 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_11055 b284ba02b5d1538f8608245233f12f0c 349 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 232 244 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RA13_11055 b284ba02b5d1538f8608245233f12f0c 349 Pfam PF00348 Polyprenyl synthetase 60 293 4.7E-68 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RA13_11055 b284ba02b5d1538f8608245233f12f0c 349 Gene3D G3DSA:1.10.600.10 35 349 1.5E-99 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_11055 b284ba02b5d1538f8608245233f12f0c 349 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 110 124 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site RA13_11055 b284ba02b5d1538f8608245233f12f0c 349 TIGRFAM TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II 31 349 6.9E-173 T 13-10-2018 IPR014119 Heptaprenyl diphosphate synthase component II KEGG: 00900+2.5.1.30|MetaCyc: PWY-5807 RA13_11055 b284ba02b5d1538f8608245233f12f0c 349 SUPERFAMILY SSF48576 35 348 3.72E-88 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily RA13_07515 c0d99fc4309dc3a6f5d74e151ed39e0a 437 Pfam PF02687 FtsX-like permease family 326 428 9.4E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_07515 c0d99fc4309dc3a6f5d74e151ed39e0a 437 Pfam PF12704 MacB-like periplasmic core domain 22 272 1.4E-9 T 13-10-2018 IPR025857 MacB-like periplasmic core domain RA13_07970 eec402a892511ae217f9512343bcfcbe 531 SUPERFAMILY SSF56801 23 522 3.27E-137 T 13-10-2018 RA13_07970 eec402a892511ae217f9512343bcfcbe 531 Gene3D G3DSA:3.30.300.310 420 526 3.4E-28 T 13-10-2018 RA13_07970 eec402a892511ae217f9512343bcfcbe 531 Pfam PF00501 AMP-binding enzyme 24 423 4.1E-82 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RA13_07970 eec402a892511ae217f9512343bcfcbe 531 Gene3D G3DSA:3.40.50.12780 7 419 1.6E-109 T 13-10-2018 RA13_07970 eec402a892511ae217f9512343bcfcbe 531 Pfam PF13193 AMP-binding enzyme C-terminal domain 432 510 7.7E-23 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RA13_07970 eec402a892511ae217f9512343bcfcbe 531 ProSitePatterns PS00455 Putative AMP-binding domain signature. 175 186 - T 13-10-2018 IPR020845 AMP-binding, conserved site RA13_02095 044680347b6378df0b1bbe5584844e0d 404 Pfam PF07690 Major Facilitator Superfamily 28 229 3.3E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_02095 044680347b6378df0b1bbe5584844e0d 404 SUPERFAMILY SSF103473 7 391 2.22E-49 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_02095 044680347b6378df0b1bbe5584844e0d 404 Gene3D G3DSA:1.20.1250.20 204 391 2.0E-22 T 13-10-2018 RA13_02095 044680347b6378df0b1bbe5584844e0d 404 TIGRFAM TIGR00896 CynX: cyanate transporter 14 370 1.4E-147 T 13-10-2018 IPR004747 Cyanate transport system protein GO:0016021 RA13_02095 044680347b6378df0b1bbe5584844e0d 404 Gene3D G3DSA:1.20.1250.20 4 197 4.6E-18 T 13-10-2018 RA13_12205 70a3c7f9d2d105524e7ffd3cafafa3df 638 SMART SM00327 442 633 9.6E-20 T 13-10-2018 IPR002035 von Willebrand factor, type A RA13_12205 70a3c7f9d2d105524e7ffd3cafafa3df 638 Pfam PF00092 von Willebrand factor type A domain 447 624 2.4E-8 T 13-10-2018 IPR002035 von Willebrand factor, type A RA13_12205 70a3c7f9d2d105524e7ffd3cafafa3df 638 Gene3D G3DSA:3.40.50.410 443 631 2.4E-12 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_12205 70a3c7f9d2d105524e7ffd3cafafa3df 638 SUPERFAMILY SSF53300 446 631 4.29E-17 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RA13_04685 8131ff24d088c57c93a910d1de477006 536 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_04685 8131ff24d088c57c93a910d1de477006 536 Pfam PF00005 ABC transporter 41 171 9.2E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_04685 8131ff24d088c57c93a910d1de477006 536 SMART SM00382 49 237 1.6E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_04685 8131ff24d088c57c93a910d1de477006 536 SUPERFAMILY SSF52540 35 235 3.99E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04685 8131ff24d088c57c93a910d1de477006 536 Gene3D G3DSA:3.40.50.300 5 281 2.0E-44 T 13-10-2018 RA13_21275 e2d291e80d8d8097f4684b1d5551c4b7 269 Hamap MF_02077 Lipid II flippase Amj [amj]. 5 267 26.983 T 13-10-2018 IPR021260 Lipid II flippase Amj RA13_21275 e2d291e80d8d8097f4684b1d5551c4b7 269 Pfam PF10997 Alternate to MurJ 15 265 2.7E-97 T 13-10-2018 IPR021260 Lipid II flippase Amj RA13_09670 9b2cfad8ed16ae2f28e839a859975818 125 Gene3D G3DSA:1.10.3830.10 5 124 1.6E-37 T 13-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RA13_09670 9b2cfad8ed16ae2f28e839a859975818 125 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 72 83 - T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RA13_09670 9b2cfad8ed16ae2f28e839a859975818 125 Pfam PF01219 Prokaryotic diacylglycerol kinase 19 119 2.0E-33 T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RA13_03140 9c26337784298f4c2806b94beef7f0d6 450 PIRSF PIRSF002744 1 450 8.4E-142 T 13-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 RA13_03140 9c26337784298f4c2806b94beef7f0d6 450 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 11 428 1.8E-114 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RA13_03140 9c26337784298f4c2806b94beef7f0d6 450 Gene3D G3DSA:1.10.4160.10 5 448 5.4E-44 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily RA13_14075 f0a80342db8f1b5e76718f2b149c14fc 75 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 67 1.2E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_14075 f0a80342db8f1b5e76718f2b149c14fc 75 SUPERFAMILY SSF47413 3 67 9.6E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_14075 f0a80342db8f1b5e76718f2b149c14fc 75 Gene3D G3DSA:1.10.260.40 1 72 1.7E-5 T 13-10-2018 RA13_17055 90c2e063484681c64de8c10a8ec691fe 205 Pfam PF06114 IrrE N-terminal-like domain 33 147 9.0E-19 T 13-10-2018 IPR010359 IrrE N-terminal-like domain RA13_09355 1cd2ec5c2479d1ce457e9422236d313e 280 Gene3D G3DSA:3.40.50.1110 1 248 6.4E-87 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RA13_09355 1cd2ec5c2479d1ce457e9422236d313e 280 Pfam PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase 5 225 6.5E-53 T 13-10-2018 IPR005181 Sialate O-acetylesterase domain RA13_09355 1cd2ec5c2479d1ce457e9422236d313e 280 SUPERFAMILY SSF52266 2 273 1.08E-79 T 13-10-2018 RA13_09355 1cd2ec5c2479d1ce457e9422236d313e 280 Gene3D G3DSA:1.10.1200.110 249 279 1.6E-8 T 13-10-2018 RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 Gene3D G3DSA:3.40.50.720 1 271 9.0E-87 T 13-10-2018 RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 253 2.9E-73 T 13-10-2018 RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 SUPERFAMILY SSF51735 5 256 1.66E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.2E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.2E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 6.2E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.2E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 6.2E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.2E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_02525 4804d12eb27c0eb3b0a79c4e8685b0a0 273 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_10990 c5cf483208c20b35a7437c3859383b80 200 PIRSF PIRSF036710 1 200 5.7E-70 T 13-10-2018 IPR014617 Predicted membrane protein, Bacillus YphA type RA13_09820 7a7515e4d295d7ad241e05260b3e1365 714 Gene3D G3DSA:1.10.10.1230 92 194 3.1E-232 T 13-10-2018 RA13_09820 7a7515e4d295d7ad241e05260b3e1365 714 SUPERFAMILY SSF56519 64 318 1.96E-35 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RA13_09820 7a7515e4d295d7ad241e05260b3e1365 714 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 304 3.1E-35 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RA13_09820 7a7515e4d295d7ad241e05260b3e1365 714 SUPERFAMILY SSF56601 319 686 6.73E-71 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_09820 7a7515e4d295d7ad241e05260b3e1365 714 Gene3D G3DSA:3.40.710.10 319 660 3.1E-232 T 13-10-2018 RA13_09820 7a7515e4d295d7ad241e05260b3e1365 714 Gene3D G3DSA:3.90.1310.30 67 572 3.1E-232 T 13-10-2018 RA13_09820 7a7515e4d295d7ad241e05260b3e1365 714 Pfam PF00905 Penicillin binding protein transpeptidase domain 352 680 3.3E-79 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RA13_05270 a7e87b03d97bfbc97dbd3d6c7ec48f83 312 Pfam PF00005 ABC transporter 21 163 1.1E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05270 a7e87b03d97bfbc97dbd3d6c7ec48f83 312 SUPERFAMILY SSF52540 3 226 5.84E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_05270 a7e87b03d97bfbc97dbd3d6c7ec48f83 312 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_05270 a7e87b03d97bfbc97dbd3d6c7ec48f83 312 SMART SM00382 29 212 1.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05270 a7e87b03d97bfbc97dbd3d6c7ec48f83 312 Gene3D G3DSA:3.40.50.300 1 238 3.5E-73 T 13-10-2018 RA13_09500 1a0d726c21a071886ab4e08954844db9 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 261 5.9E-16 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_09500 1a0d726c21a071886ab4e08954844db9 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 97 6.5E-21 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RA13_09500 1a0d726c21a071886ab4e08954844db9 273 Gene3D G3DSA:1.10.3730.10 168 270 3.0E-13 T 13-10-2018 RA13_09500 1a0d726c21a071886ab4e08954844db9 273 SUPERFAMILY SSF51735 2 156 2.97E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_09500 1a0d726c21a071886ab4e08954844db9 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 220 242 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_09500 1a0d726c21a071886ab4e08954844db9 273 PIRSF PIRSF000193 1 266 1.2E-77 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RA13_09500 1a0d726c21a071886ab4e08954844db9 273 Gene3D G3DSA:3.40.50.720 1 162 1.7E-33 T 13-10-2018 RA13_09500 1a0d726c21a071886ab4e08954844db9 273 SUPERFAMILY SSF48179 160 262 1.53E-16 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RA13_05645 2ee51c622d1b5420dab042427d030022 211 Pfam PF02525 Flavodoxin-like fold 3 206 2.1E-44 T 13-10-2018 IPR003680 Flavodoxin-like fold RA13_05645 2ee51c622d1b5420dab042427d030022 211 Gene3D G3DSA:3.40.50.360 1 211 1.9E-61 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_05645 2ee51c622d1b5420dab042427d030022 211 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 211 27.64 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RA13_05645 2ee51c622d1b5420dab042427d030022 211 SUPERFAMILY SSF52218 1 210 3.69E-52 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_21840 64764072b5d0b40445d9a2b1b394f823 411 Pfam PF13556 PucR C-terminal helix-turn-helix domain 349 406 1.0E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain RA13_21840 64764072b5d0b40445d9a2b1b394f823 411 Gene3D G3DSA:1.10.10.2840 279 411 1.5E-17 T 13-10-2018 RA13_13385 b72d5a782e0e274610d57b0ec10fa491 187 SMART SM00860 44 163 3.0E-8 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RA13_13385 b72d5a782e0e274610d57b0ec10fa491 187 Gene3D G3DSA:3.40.1580.10 39 171 5.6E-13 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily RA13_13385 b72d5a782e0e274610d57b0ec10fa491 187 SUPERFAMILY SSF160631 42 177 2.49E-15 T 13-10-2018 RA13_13385 b72d5a782e0e274610d57b0ec10fa491 187 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 44 161 5.5E-11 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RA13_12095 09dd4877e03f1af6724d7515f4f964fc 278 Pfam PF05709 Phage tail protein 25 278 3.0E-32 T 13-10-2018 IPR008841 Siphovirus-type tail component RA13_12945 cdaedbb794e84b75abc48dd171f82b72 224 Pfam PF02586 SOS response associated peptidase (SRAP) 1 212 3.5E-70 T 13-10-2018 IPR003738 SOS response associated peptidase (SRAP) RA13_12945 cdaedbb794e84b75abc48dd171f82b72 224 SUPERFAMILY SSF143081 2 222 6.67E-74 T 13-10-2018 IPR036590 SOS response associated peptidase-like RA13_12945 cdaedbb794e84b75abc48dd171f82b72 224 Gene3D G3DSA:3.90.1680.10 1 224 6.9E-73 T 13-10-2018 IPR036590 SOS response associated peptidase-like RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 18 188 1.8E-25 T 13-10-2018 IPR010090 Phage tail tape measure protein RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 937 965 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 Gene3D G3DSA:2.70.70.10 1042 1176 3.9E-34 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 Pfam PF01551 Peptidase family M23 1073 1168 1.3E-27 T 13-10-2018 IPR016047 Peptidase M23 RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 SUPERFAMILY SSF53955 912 1036 9.93E-50 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 Gene3D G3DSA:1.10.530.10 877 1040 8.4E-52 T 13-10-2018 RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 SUPERFAMILY SSF51261 1041 1172 1.05E-38 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_14315 7a5f96923b0bd5bac5d4553dd4898d9c 1787 Pfam PF01464 Transglycosylase SLT domain 919 1027 1.7E-32 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 RA13_17660 35700a3d4b4adc56b248ad3505ca7dd5 63 ProDom PD027277 REPRESSOR COMZ COMG OPERON TRANSCRIPTION POSSIBLE COMPETENCE PROTEIN-RELATED BH2888 REGULATION 3 57 2.0E-22 T 13-10-2018 IPR024558 ComZ RA13_17660 35700a3d4b4adc56b248ad3505ca7dd5 63 Pfam PF10815 ComZ 4 58 1.4E-31 T 13-10-2018 IPR024558 ComZ RA13_05530 f0ce64b8c4348d56c12785dcf2157a5e 606 Pfam PF13240 zinc-ribbon domain 3 25 8.6E-6 T 13-10-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 RA13_09130 a479e4440fa69cc07350a39aed20941e 422 Pfam PF01136 Peptidase family U32 94 323 2.3E-86 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RA13_09130 a479e4440fa69cc07350a39aed20941e 422 ProSitePatterns PS01276 Peptidase family U32 signature. 179 197 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RA13_09130 a479e4440fa69cc07350a39aed20941e 422 Gene3D G3DSA:2.40.30.10 334 421 1.7E-37 T 13-10-2018 RA13_09130 a479e4440fa69cc07350a39aed20941e 422 Pfam PF16325 Peptidase family U32 C-terminal domain 338 419 1.5E-26 T 13-10-2018 IPR032525 Peptidase family U32, C-terminal RA13_15775 67d7c7283f7b5d3b6a7119a7a5c67118 93 Gene3D G3DSA:1.10.287.750 4 92 4.7E-37 T 13-10-2018 IPR036270 UPF0358 superfamily RA13_15775 67d7c7283f7b5d3b6a7119a7a5c67118 93 Hamap MF_01560 UPF0358 protein . 3 93 26.891 T 13-10-2018 IPR009983 Uncharacterised protein family UPF0358 RA13_15775 67d7c7283f7b5d3b6a7119a7a5c67118 93 SUPERFAMILY SSF140404 6 84 2.35E-36 T 13-10-2018 IPR036270 UPF0358 superfamily RA13_15775 67d7c7283f7b5d3b6a7119a7a5c67118 93 Pfam PF07408 Protein of unknown function (DUF1507) 9 90 5.0E-41 T 13-10-2018 IPR009983 Uncharacterised protein family UPF0358 RA13_08670 446f9fde9b8856dbacb5ae7fa0198089 430 SUPERFAMILY SSF53383 4 425 3.67E-131 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_08670 446f9fde9b8856dbacb5ae7fa0198089 430 Gene3D G3DSA:3.40.640.10 72 319 1.0E-184 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_08670 446f9fde9b8856dbacb5ae7fa0198089 430 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 427 104.447 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RA13_08670 446f9fde9b8856dbacb5ae7fa0198089 430 Pfam PF00202 Aminotransferase class-III 34 398 2.5E-74 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_08670 446f9fde9b8856dbacb5ae7fa0198089 430 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 426 1.6E-203 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RA13_08670 446f9fde9b8856dbacb5ae7fa0198089 430 Gene3D G3DSA:3.90.1150.10 10 421 1.0E-184 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_08670 446f9fde9b8856dbacb5ae7fa0198089 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 273 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RA13_03430 a34df75a1ea5a274c3cadba43e5cc520 514 ProSitePatterns PS01163 Galactose-1-phosphate uridyl transferase family 2 signature. 263 280 - T 13-10-2018 IPR023425 Galactose-1-phosphate uridyl transferase, class II, conserved site GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03430 a34df75a1ea5a274c3cadba43e5cc520 514 PIRSF PIRSF006005 1 507 2.7E-217 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03430 a34df75a1ea5a274c3cadba43e5cc520 514 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 251 451 9.5E-44 T 13-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RA13_03430 a34df75a1ea5a274c3cadba43e5cc520 514 Hamap MF_00571 Galactose-1-phosphate uridylyltransferase [galT]. 1 514 250.985 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03430 a34df75a1ea5a274c3cadba43e5cc520 514 TIGRFAM TIGR01239 galT_2: galactose-1-phosphate uridylyltransferase 7 503 4.0E-236 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 RA13_03430 a34df75a1ea5a274c3cadba43e5cc520 514 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 23 235 2.3E-29 T 13-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 RA13_09900 f64c0fa77adacbe69cd5b826f278c111 638 Gene3D G3DSA:3.40.720.10 238 546 1.1E-76 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RA13_09900 f64c0fa77adacbe69cd5b826f278c111 638 PIRSF PIRSF005091 1 620 3.3E-205 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like RA13_09900 f64c0fa77adacbe69cd5b826f278c111 638 Pfam PF00884 Sulfatase 245 536 2.7E-37 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RA13_09900 f64c0fa77adacbe69cd5b826f278c111 638 SUPERFAMILY SSF53649 243 620 2.45E-70 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RA13_17240 365e86bd1457504aa12e14e2076b28bb 70 SUPERFAMILY SSF140500 20 65 5.36E-11 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 RA13_17240 365e86bd1457504aa12e14e2076b28bb 70 Pfam PF09388 Spo0E like sporulation regulatory protein 24 64 1.9E-11 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 RA13_06780 193a55a56360daeee0418e34c5a74484 273 SUPERFAMILY SSF53474 7 272 8.98E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_06780 193a55a56360daeee0418e34c5a74484 273 PRINTS PR00412 Epoxide hydrolase signature 34 52 1.8E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RA13_06780 193a55a56360daeee0418e34c5a74484 273 PRINTS PR00412 Epoxide hydrolase signature 249 271 1.8E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RA13_06780 193a55a56360daeee0418e34c5a74484 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 3.4E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_06780 193a55a56360daeee0418e34c5a74484 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 3.4E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_06780 193a55a56360daeee0418e34c5a74484 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 218 232 3.4E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_06780 193a55a56360daeee0418e34c5a74484 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.4E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_06780 193a55a56360daeee0418e34c5a74484 273 Pfam PF12697 Alpha/beta hydrolase family 30 266 1.7E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_06780 193a55a56360daeee0418e34c5a74484 273 Gene3D G3DSA:3.40.50.1820 5 273 2.7E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_03630 fbebbad38d24ba3ebf0d5a9fc91a4d2a 254 Pfam PF06778 Chlorite dismutase 39 242 2.4E-76 T 13-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase RA13_03630 fbebbad38d24ba3ebf0d5a9fc91a4d2a 254 Gene3D G3DSA:3.30.70.1030 7 143 2.4E-52 T 13-10-2018 RA13_03630 fbebbad38d24ba3ebf0d5a9fc91a4d2a 254 SUPERFAMILY SSF54909 13 252 1.85E-94 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_03630 fbebbad38d24ba3ebf0d5a9fc91a4d2a 254 Hamap MF_01442 Putative heme-dependent peroxidase . 7 254 57.682 T 13-10-2018 IPR031332 Putative heme-dependent peroxidase, UPF0447 family RA13_03630 fbebbad38d24ba3ebf0d5a9fc91a4d2a 254 Gene3D G3DSA:3.30.70.1100 144 254 3.1E-47 T 13-10-2018 RA13_21350 3ead84690dfc8857b983b18aad183aa3 234 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 2 210 6.7E-76 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RA13_21350 3ead84690dfc8857b983b18aad183aa3 234 SUPERFAMILY SSF160467 3 101 1.96E-17 T 13-10-2018 RA13_21350 3ead84690dfc8857b983b18aad183aa3 234 SUPERFAMILY SSF50891 96 226 2.31E-49 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RA13_21350 3ead84690dfc8857b983b18aad183aa3 234 Gene3D G3DSA:2.40.100.10 94 233 8.8E-62 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily RA13_21350 3ead84690dfc8857b983b18aad183aa3 234 SMART SM00796 1 210 3.2E-95 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RA13_21350 3ead84690dfc8857b983b18aad183aa3 234 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 5 219 8.2E-96 T 13-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 RA13_21350 3ead84690dfc8857b983b18aad183aa3 234 Gene3D G3DSA:3.30.1360.40 1 92 4.8E-31 T 13-10-2018 RA13_18260 5ef21eff374fca0278a90debe1897a50 396 SUPERFAMILY SSF55031 188 306 1.03E-27 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_18260 5ef21eff374fca0278a90debe1897a50 396 PIRSF PIRSF005962 5 396 1.6E-128 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RA13_18260 5ef21eff374fca0278a90debe1897a50 396 Pfam PF07687 Peptidase dimerisation domain 192 284 2.8E-6 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RA13_18260 5ef21eff374fca0278a90debe1897a50 396 Pfam PF01546 Peptidase family M20/M25/M40 79 389 2.6E-30 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_18260 5ef21eff374fca0278a90debe1897a50 396 Gene3D G3DSA:3.40.630.10 21 379 5.2E-140 T 13-10-2018 RA13_18260 5ef21eff374fca0278a90debe1897a50 396 Gene3D G3DSA:3.30.70.360 188 302 5.2E-140 T 13-10-2018 RA13_18260 5ef21eff374fca0278a90debe1897a50 396 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 21 382 8.1E-114 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RA13_18260 5ef21eff374fca0278a90debe1897a50 396 SUPERFAMILY SSF53187 8 394 1.45E-82 T 13-10-2018 RA13_09815 a9c85b3f3226aeddf64f61615ec2ee7c 430 Gene3D G3DSA:1.20.1250.20 216 402 4.2E-5 T 13-10-2018 RA13_09815 a9c85b3f3226aeddf64f61615ec2ee7c 430 Gene3D G3DSA:1.20.1250.20 14 204 1.9E-13 T 13-10-2018 RA13_09815 a9c85b3f3226aeddf64f61615ec2ee7c 430 Pfam PF07690 Major Facilitator Superfamily 64 336 6.6E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_09815 a9c85b3f3226aeddf64f61615ec2ee7c 430 SUPERFAMILY SSF103473 14 398 9.02E-30 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_07790 4a5f86e395d9a2dadcd349cdd989fc40 155 Pfam PF12732 YtxH-like protein 12 93 1.5E-20 T 13-10-2018 IPR024623 Uncharacterised protein family YtxH RA13_01365 93f617ff7328fcd77b1a83f3db5c4031 180 Pfam PF00156 Phosphoribosyl transferase domain 15 160 1.9E-25 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RA13_01365 93f617ff7328fcd77b1a83f3db5c4031 180 SUPERFAMILY SSF53271 2 179 1.97E-60 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_01365 93f617ff7328fcd77b1a83f3db5c4031 180 Gene3D G3DSA:3.40.50.2020 1 180 3.1E-68 T 13-10-2018 RA13_01365 93f617ff7328fcd77b1a83f3db5c4031 180 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 9 174 3.0E-71 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 RA13_08920 035bddfcfbfcd2dc022d5838e9588748 66 Pfam PF11146 Protein of unknown function (DUF2905) 6 62 2.8E-20 T 13-10-2018 IPR021320 Protein of unknown function DUF2905 RA13_10030 b0be6e062dd92f2c42868335f28b2065 57 Pfam PF08671 Anti-repressor SinI 11 36 5.0E-11 T 13-10-2018 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain GO:0006355|GO:0046983 RA13_10030 b0be6e062dd92f2c42868335f28b2065 57 SUPERFAMILY SSF47406 10 38 2.22E-10 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 RA13_12820 b56338f1282d0abef77cb5b8954f8548 149 Pfam PF10710 Protein of unknown function (DUF2512) 1 138 3.1E-42 T 13-10-2018 IPR019649 Protein of unknown function DUF2512 RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 Gene3D G3DSA:2.60.40.50 1 75 4.6E-45 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 Pfam PF02081 Tryptophan RNA-binding attenuator protein 6 73 5.0E-40 T 13-10-2018 IPR023558 Tryptophan RNA-binding attenuator protein domain RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 42 58 4.8E-41 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 9 26 4.8E-41 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 26 42 4.8E-41 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 58 74 4.8E-41 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 SUPERFAMILY SSF51219 7 74 2.28E-36 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily RA13_11040 7ec33c76a70200d18c48bb4a527cf343 75 Hamap MF_00798 Transcription attenuation protein MtrB [mtrB]. 1 73 29.801 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 RA13_14715 3b1b86927314fccc35848b9d104f3e81 193 PIRSF PIRSF000847 1 193 1.5E-54 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RA13_14715 3b1b86927314fccc35848b9d104f3e81 193 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 82 3.5E-18 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RA13_14715 3b1b86927314fccc35848b9d104f3e81 193 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2 191 2.8E-70 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RA13_14715 3b1b86927314fccc35848b9d104f3e81 193 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 60 82 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RA13_14715 3b1b86927314fccc35848b9d104f3e81 193 Gene3D G3DSA:1.20.120.1760 4 184 5.0E-11 T 13-10-2018 RA13_14435 01bb08baad70841a7fc79cfe844a0857 177 Gene3D G3DSA:3.40.1580.10 34 170 3.4E-22 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily RA13_14435 01bb08baad70841a7fc79cfe844a0857 177 SMART SM00860 44 153 2.9E-11 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RA13_14435 01bb08baad70841a7fc79cfe844a0857 177 Pfam PF14568 SMI1-KNR4 cell-wall 47 150 2.1E-10 T 13-10-2018 RA13_14435 01bb08baad70841a7fc79cfe844a0857 177 SUPERFAMILY SSF160631 38 166 9.03E-21 T 13-10-2018 RA13_13450 4b0de5a590e00cd634ec5461a922b6dc 235 Gene3D G3DSA:3.40.50.300 1 230 2.9E-60 T 13-10-2018 RA13_13450 4b0de5a590e00cd634ec5461a922b6dc 235 SMART SM00382 25 207 1.4E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_13450 4b0de5a590e00cd634ec5461a922b6dc 235 SUPERFAMILY SSF52540 2 218 6.23E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_13450 4b0de5a590e00cd634ec5461a922b6dc 235 Pfam PF00005 ABC transporter 16 159 1.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_04945 53d23b2502012e456bab63ace2af12a0 834 SUPERFAMILY SSF56059 13 296 4.0E-76 T 13-10-2018 RA13_04945 53d23b2502012e456bab63ace2af12a0 834 Gene3D G3DSA:3.30.470.20 163 313 2.2E-42 T 13-10-2018 RA13_04945 53d23b2502012e456bab63ace2af12a0 834 Gene3D G3DSA:3.50.30.10 728 833 1.0E-34 T 13-10-2018 RA13_04945 53d23b2502012e456bab63ace2af12a0 834 Gene3D G3DSA:3.30.1490.20 2 162 1.2E-42 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RA13_04945 53d23b2502012e456bab63ace2af12a0 834 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 14 303 1.7E-80 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RA13_04945 53d23b2502012e456bab63ace2af12a0 834 SUPERFAMILY SSF52009 728 829 9.94E-29 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RA13_04945 53d23b2502012e456bab63ace2af12a0 834 Pfam PF00391 PEP-utilising enzyme, mobile domain 755 826 8.3E-24 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RA13_15815 81143992799cbca1dfa62b49d41b9104 62 Pfam PF17259 Family of unknown function (DUF5325) 1 61 6.8E-28 T 13-10-2018 IPR035211 Protein of unknown function DUF5325 RA13_15815 81143992799cbca1dfa62b49d41b9104 62 ProDom PD699877 YLAF TRANSMEMBRANE MEMBRANE BH2633 1 56 3.0E-18 T 13-10-2018 IPR035211 Protein of unknown function DUF5325 RA13_14495 1c161e57c32c7747e16aea81057b0089 89 Gene3D G3DSA:2.60.40.3150 46 89 8.3E-22 T 13-10-2018 RA13_14495 1c161e57c32c7747e16aea81057b0089 89 Pfam PF14157 YmzC-like protein 30 87 2.4E-28 T 13-10-2018 IPR025448 YmzC-like protein RA13_13810 cccaa2b7b5d8373c5e0ef67f8bc02129 104 Gene3D G3DSA:3.30.56.60 19 79 2.6E-6 T 13-10-2018 IPR035950 XkdW-like superfamily RA13_13810 cccaa2b7b5d8373c5e0ef67f8bc02129 104 Pfam PF09636 XkdW protein 19 91 7.1E-6 T 13-10-2018 IPR019094 Bacteriophage SP-beta, YorD RA13_13810 cccaa2b7b5d8373c5e0ef67f8bc02129 104 SUPERFAMILY SSF159865 19 75 3.66E-18 T 13-10-2018 IPR035950 XkdW-like superfamily RA13_09350 5f23d63f7cf5fb2db87170d1c57c902f 175 Pfam PF03551 Transcriptional regulator PadR-like family 6 82 7.3E-10 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RA13_09350 5f23d63f7cf5fb2db87170d1c57c902f 175 SUPERFAMILY SSF46785 3 174 8.59E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_09350 5f23d63f7cf5fb2db87170d1c57c902f 175 Gene3D G3DSA:1.10.10.10 1 96 4.4E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_00875 4d2fe747254c50f4e2255ceaac5021a8 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.6E-46 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RA13_00875 4d2fe747254c50f4e2255ceaac5021a8 130 SUPERFAMILY SSF54211 5 130 1.02E-48 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RA13_00875 4d2fe747254c50f4e2255ceaac5021a8 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RA13_00875 4d2fe747254c50f4e2255ceaac5021a8 130 Gene3D G3DSA:3.30.230.10 1 130 1.7E-51 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RA13_00875 4d2fe747254c50f4e2255ceaac5021a8 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 34.917 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid RA13_14500 282870fc02e61503cc6cb4a75094ef8d 73 SUPERFAMILY SSF50182 5 63 2.45E-24 T 13-10-2018 IPR010920 LSM domain superfamily RA13_14500 282870fc02e61503cc6cb4a75094ef8d 73 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.9E-32 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RA13_14500 282870fc02e61503cc6cb4a75094ef8d 73 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 2 64 30.091 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RA13_14500 282870fc02e61503cc6cb4a75094ef8d 73 Gene3D G3DSA:2.30.30.100 1 73 9.0E-36 T 13-10-2018 RA13_14500 282870fc02e61503cc6cb4a75094ef8d 73 Pfam PF17209 Hfq protein 6 68 1.9E-33 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RA13_14395 9ec39c3f78c49df66e8ed0c9fb43c925 27 Pfam PF16935 Putative Holin-like Toxin (Hol-Tox) 2 24 4.3E-7 T 13-10-2018 IPR031616 Putative Holin-like Toxin (Hol-Tox) RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 23 187 3.2E-54 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 Gene3D G3DSA:2.10.109.10 70 193 9.6E-38 T 13-10-2018 RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 ProSitePatterns PS00501 Signal peptidases I serine active site. 49 56 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 SUPERFAMILY SSF51306 38 190 7.19E-51 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 145 164 4.6E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 91 103 4.6E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 40 56 4.6E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 ProSitePatterns PS00760 Signal peptidases I lysine active site. 93 105 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 Pfam PF00717 Peptidase S24-like 47 115 3.2E-20 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RA13_15990 18e6a4bfef885c155f76fc1f8b52cd76 193 ProSitePatterns PS00761 Signal peptidases I signature 3. 150 163 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 RA13_00500 04a8e098e8a85a504e8021e86625a5e3 82 Pfam PF17334 Sigma-G-dependent sporulation-specific SASP protein 1 82 6.1E-36 T 13-10-2018 IPR020255 Sigma-G-dependent sporulation-specific SASP protein RA13_00500 04a8e098e8a85a504e8021e86625a5e3 82 ProDom PD059965 SASP SPORULATION-SPECIFIC SIGMA-G-DEPENDENT SPORULATION SPECIFIC CSGA 1 81 2.0E-30 T 13-10-2018 IPR020255 Sigma-G-dependent sporulation-specific SASP protein RA13_02375 14196afdb3ba22e2a2fdeb3ab63e22cd 209 SMART SM00382 25 194 0.0051 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_02375 14196afdb3ba22e2a2fdeb3ab63e22cd 209 Gene3D G3DSA:3.40.50.300 1 208 2.0E-29 T 13-10-2018 RA13_02375 14196afdb3ba22e2a2fdeb3ab63e22cd 209 SUPERFAMILY SSF52540 3 204 2.07E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_02375 14196afdb3ba22e2a2fdeb3ab63e22cd 209 Pfam PF00005 ABC transporter 16 142 1.7E-12 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_19965 633a220f45b9f166b5d7548aa1b916ec 292 SUPERFAMILY SSF56112 8 275 5.61E-17 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily RA13_00590 3c4d564f40acc4435ea30e99f3d4fb85 171 Pfam PF13646 HEAT repeats 38 110 4.5E-7 T 13-10-2018 RA13_00590 3c4d564f40acc4435ea30e99f3d4fb85 171 SUPERFAMILY SSF48371 23 121 1.06E-10 T 13-10-2018 IPR016024 Armadillo-type fold RA13_00590 3c4d564f40acc4435ea30e99f3d4fb85 171 Gene3D G3DSA:1.25.10.10 1 169 1.4E-16 T 13-10-2018 IPR011989 Armadillo-like helical RA13_18330 61cc02b5f2ad5ce39ef508c705188d35 28 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 5 27 7.7E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_18330 61cc02b5f2ad5ce39ef508c705188d35 28 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 5 26 3.5E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_19625 b6a8aea6497e7943c91ff08db1b48874 159 Pfam PF13673 Acetyltransferase (GNAT) domain 38 140 8.3E-14 T 13-10-2018 IPR000182 GNAT domain RA13_19625 b6a8aea6497e7943c91ff08db1b48874 159 Gene3D G3DSA:3.40.630.30 1 157 5.5E-37 T 13-10-2018 RA13_19625 b6a8aea6497e7943c91ff08db1b48874 159 SUPERFAMILY SSF55729 1 147 1.56E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 Hamap MF_01393 ATP synthase subunit a [atpB]. 1 243 14.224 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 SUPERFAMILY SSF81336 72 237 2.88E-41 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 13 239 1.3E-53 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 PRINTS PR00123 ATP synthase A subunit signature 78 94 8.7E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 PRINTS PR00123 ATP synthase A subunit signature 146 161 8.7E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 PRINTS PR00123 ATP synthase A subunit signature 162 184 8.7E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 PRINTS PR00123 ATP synthase A subunit signature 223 238 8.7E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 ProSitePatterns PS00449 ATP synthase a subunit signature. 165 174 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 Gene3D G3DSA:1.20.120.220 70 244 3.6E-41 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_04025 c99a155dab7390e5213ab89bff7f5392 244 Pfam PF00119 ATP synthase A chain 20 237 4.8E-58 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RA13_03435 88bb5bdcc6c57dc3e469dab7a4b11d67 81 Pfam PF04226 Transglycosylase associated protein 33 78 4.5E-10 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 RA13_21460 9732a46f9e2727e68cbfdadbeed20096 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 6.2E-20 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RA13_21460 9732a46f9e2727e68cbfdadbeed20096 95 Gene3D G3DSA:3.30.70.100 1 93 1.1E-26 T 13-10-2018 RA13_21460 9732a46f9e2727e68cbfdadbeed20096 95 SUPERFAMILY SSF54909 1 87 2.29E-27 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_04225 e96b404e082fca00dc7a6df0c35add10 301 SUPERFAMILY SSF51261 112 220 9.94E-26 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_04225 e96b404e082fca00dc7a6df0c35add10 301 Pfam PF01551 Peptidase family M23 119 216 3.0E-24 T 13-10-2018 IPR016047 Peptidase M23 RA13_04225 e96b404e082fca00dc7a6df0c35add10 301 Gene3D G3DSA:2.70.70.10 75 232 9.5E-56 T 13-10-2018 IPR011055 Duplicated hybrid motif RA13_19935 29d19ccbefec0303e73daa98aa8d90a4 189 SUPERFAMILY SSF47240 1 184 3.71E-68 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_19935 29d19ccbefec0303e73daa98aa8d90a4 189 Gene3D G3DSA:1.20.1260.10 1 184 1.4E-63 T 13-10-2018 IPR012347 Ferritin-like RA13_19935 29d19ccbefec0303e73daa98aa8d90a4 189 Pfam PF05067 Manganese containing catalase 1 184 4.8E-79 T 13-10-2018 IPR007760 Manganese catalase RA13_01585 e9e6793d3f93aa891b94572e58df13a5 399 Pfam PF05816 Toxic anion resistance protein (TelA) 58 386 8.3E-123 T 13-10-2018 IPR008863 Toxic anion resistance RA13_01585 e9e6793d3f93aa891b94572e58df13a5 399 PIRSF PIRSF026508 26 394 3.9E-127 T 13-10-2018 IPR008863 Toxic anion resistance RA13_01415 375ad5aa540178ee3ef6e5aa77f5e872 100 TIGRFAM TIGR02892 spore_yabP: sporulation protein YabP 17 100 2.4E-33 T 13-10-2018 IPR012504 Sporulation protein YabP RA13_01415 375ad5aa540178ee3ef6e5aa77f5e872 100 Pfam PF07873 YabP family 17 82 3.9E-21 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC RA13_01415 375ad5aa540178ee3ef6e5aa77f5e872 100 ProDom PD067726 YABP B.SUBTILIS PRECURSOR UNCHARACTERIZED BH0074 SIGNAL CPE2477 PROTEIN 16 100 2.0E-42 T 13-10-2018 IPR012504 Sporulation protein YabP RA13_01415 375ad5aa540178ee3ef6e5aa77f5e872 100 PIRSF PIRSF011576 1 100 5.3E-57 T 13-10-2018 IPR012504 Sporulation protein YabP RA13_01415 375ad5aa540178ee3ef6e5aa77f5e872 100 Gene3D G3DSA:2.60.40.2000 25 82 1.2E-23 T 13-10-2018 IPR038705 YabP superfamily RA13_19865 cf413068af658b91eb26501bc120e090 622 SUPERFAMILY SSF69318 141 406 5.49E-16 T 13-10-2018 RA13_19865 cf413068af658b91eb26501bc120e090 622 Gene3D G3DSA:2.60.40.10 37 128 5.8E-34 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_14265 9242eb005f3f3a988632d63a092ef7b2 52 Pfam PF09693 Phage uncharacterised protein (Phage_XkdX) 4 45 2.6E-13 T 13-10-2018 IPR010022 Protein of unknown function XkdX RA13_14265 9242eb005f3f3a988632d63a092ef7b2 52 TIGRFAM TIGR01669 phage_XkdX: phage uncharacterized protein, XkdX family 1 45 7.3E-10 T 13-10-2018 IPR010022 Protein of unknown function XkdX RA13_14000 fa2a679a36208caefc1726b961452232 68 SUPERFAMILY SSF47413 3 63 8.3E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_14000 fa2a679a36208caefc1726b961452232 68 SMART SM00530 4 59 1.0E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_14000 fa2a679a36208caefc1726b961452232 68 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 62 2.5E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_14000 fa2a679a36208caefc1726b961452232 68 Gene3D G3DSA:1.10.260.40 1 68 9.5E-8 T 13-10-2018 RA13_15115 f232208511bc0d1f33527be62a4c091c 304 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 300 53.471 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RA13_15115 f232208511bc0d1f33527be62a4c091c 304 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 10 301 2.0E-109 T 13-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 RA13_15115 f232208511bc0d1f33527be62a4c091c 304 Pfam PF00589 Phage integrase family 112 286 5.8E-52 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RA13_15115 f232208511bc0d1f33527be62a4c091c 304 SUPERFAMILY SSF56349 5 294 1.91E-55 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RA13_15115 f232208511bc0d1f33527be62a4c091c 304 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 91 7.6E-23 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RA13_15115 f232208511bc0d1f33527be62a4c091c 304 Gene3D G3DSA:1.10.443.10 112 294 3.7E-59 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RA13_15115 f232208511bc0d1f33527be62a4c091c 304 Gene3D G3DSA:1.10.150.130 5 100 5.3E-21 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 SUPERFAMILY SSF52743 141 439 3.27E-86 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 Gene3D G3DSA:3.40.50.200 124 440 1.2E-103 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 151 161 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 Pfam PF00082 Subtilase family 146 431 1.7E-57 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 187 197 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 382 392 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 Gene3D G3DSA:3.30.70.80 48 123 2.2E-5 T 13-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 PRINTS PR00723 Subtilisin serine protease family (S8) signature 381 397 1.1E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 PRINTS PR00723 Subtilisin serine protease family (S8) signature 146 165 1.1E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_14550 bafd6902cf81e69608e922cbb3aee1aa 442 PRINTS PR00723 Subtilisin serine protease family (S8) signature 183 196 1.1E-18 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 Pfam PF08673 Phosphoserine phosphatase RsbU, N-terminal domain 9 83 1.1E-29 T 13-10-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 SUPERFAMILY SSF101215 2 84 4.64E-30 T 13-10-2018 IPR017944 KaiA/RbsU helical domain superfamily GO:0006468 RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 146 333 4.5E-52 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 SUPERFAMILY SSF81606 128 331 1.27E-10 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 Gene3D G3DSA:1.10.1240.30 1 84 6.1E-34 T 13-10-2018 IPR017944 KaiA/RbsU helical domain superfamily GO:0006468 RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 SMART SM00331 119 333 4.6E-74 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 Gene3D G3DSA:3.60.40.10 86 335 5.2E-56 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_21005 52ae3adab4488da8873684c75bf7f2b9 335 ProDom PD685490 RSBU REGULATOR SIGMA REGULATION FACTOR B PHOSPHATASE SIGMAB INDIRECT SIGMA-B 5 91 2.0E-42 T 13-10-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 RA13_11475 c56212bd1afe53154505d042fe2d3735 60 Pfam PF10782 Zinc-finger 2 58 3.5E-29 T 13-10-2018 IPR019718 Protein of unknown function DUF2602 RA13_18450 ede507502daea99b0c15a834ccd9b39f 70 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 26 35 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_18450 ede507502daea99b0c15a834ccd9b39f 70 Gene3D G3DSA:1.10.8.910 11 70 3.6E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily RA13_18450 ede507502daea99b0c15a834ccd9b39f 70 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 44 58 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 RA13_18450 ede507502daea99b0c15a834ccd9b39f 70 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 11 65 7.3E-22 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 RA13_19640 cec6d686b49d5fb056600c2e49fd42ec 122 SUPERFAMILY SSF140688 1 113 9.81E-54 T 13-10-2018 IPR038074 YfmB domain superfamily RA13_19640 cec6d686b49d5fb056600c2e49fd42ec 122 Gene3D G3DSA:1.10.8.570 1 113 5.1E-55 T 13-10-2018 IPR038074 YfmB domain superfamily RA13_19640 cec6d686b49d5fb056600c2e49fd42ec 122 Pfam PF11486 Protein of unknown function (DUF3212) 1 120 3.4E-58 T 13-10-2018 IPR021579 Protein of unknown function DUF3212 RA13_03240 28d4451eee7049dc6b00d2ac1f5f1fb9 49 Pfam PF12459 D-Ala-teichoic acid biosynthesis protein 7 49 4.2E-17 T 13-10-2018 IPR021008 Protein of unknown function DUF3687 RA13_06650 efd294a909af03e1243b518c9c7c76f2 126 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 7 123 1.0E-41 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RA13_06650 efd294a909af03e1243b518c9c7c76f2 126 Pfam PF03061 Thioesterase superfamily 37 115 1.7E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RA13_06650 efd294a909af03e1243b518c9c7c76f2 126 Gene3D G3DSA:3.10.129.10 1 126 3.8E-50 T 13-10-2018 RA13_06650 efd294a909af03e1243b518c9c7c76f2 126 SUPERFAMILY SSF54637 5 125 9.44E-32 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_20225 e2d6dd0f49c8cdbfa553900c6f03a696 732 SUPERFAMILY SSF54001 406 559 2.1E-46 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_20225 e2d6dd0f49c8cdbfa553900c6f03a696 732 Pfam PF13559 Domain of unknown function (DUF4129) 660 725 1.0E-6 T 13-10-2018 IPR025403 Domain of unknown function DUF4129 RA13_20225 e2d6dd0f49c8cdbfa553900c6f03a696 732 Gene3D G3DSA:3.10.620.30 377 564 1.2E-24 T 13-10-2018 RA13_20225 e2d6dd0f49c8cdbfa553900c6f03a696 732 Pfam PF01841 Transglutaminase-like superfamily 426 549 1.2E-28 T 13-10-2018 IPR002931 Transglutaminase-like RA13_20225 e2d6dd0f49c8cdbfa553900c6f03a696 732 SMART SM00460 476 551 8.5E-28 T 13-10-2018 IPR002931 Transglutaminase-like RA13_11845 dbf5c7007b17708ef1631317c305f289 109 SUPERFAMILY SSF46785 6 104 4.04E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_11845 dbf5c7007b17708ef1631317c305f289 109 Pfam PF01638 HxlR-like helix-turn-helix 15 104 3.3E-36 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RA13_11845 dbf5c7007b17708ef1631317c305f289 109 Gene3D G3DSA:1.10.10.10 3 108 8.6E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 Pfam PF06723 MreB/Mbl protein 7 331 1.0E-151 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 SUPERFAMILY SSF53067 147 329 2.59E-51 T 13-10-2018 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 7 333 2.5E-164 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 Gene3D G3DSA:3.30.420.40 9 324 5.0E-131 T 13-10-2018 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 SUPERFAMILY SSF53067 8 144 2.88E-37 T 13-10-2018 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 Gene3D G3DSA:3.30.420.40 151 314 5.0E-131 T 13-10-2018 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 297 323 7.0E-61 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 184 204 7.0E-61 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 129 148 7.0E-61 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 44 62 7.0E-61 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 64 87 7.0E-61 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RA13_08720 2215655219375eb4a38ffcff6dc3292c 337 Gene3D G3DSA:3.90.640.10 183 256 5.0E-131 T 13-10-2018 RA13_05165 2ed00017e5108ed483198cbd8cde4890 259 Gene3D G3DSA:3.40.50.300 1 252 1.8E-66 T 13-10-2018 RA13_05165 2ed00017e5108ed483198cbd8cde4890 259 SMART SM00382 34 222 3.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_05165 2ed00017e5108ed483198cbd8cde4890 259 Pfam PF00005 ABC transporter 26 173 8.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_05165 2ed00017e5108ed483198cbd8cde4890 259 SUPERFAMILY SSF52540 3 226 5.06E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_11395 0ea5f47b94439fb0a85e06c7f8b05cb0 196 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 125 138 - T 13-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RA13_11395 0ea5f47b94439fb0a85e06c7f8b05cb0 196 Gene3D G3DSA:3.20.20.70 2 195 1.0E-65 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_11395 0ea5f47b94439fb0a85e06c7f8b05cb0 196 SUPERFAMILY SSF51569 5 185 1.43E-57 T 13-10-2018 RA13_11395 0ea5f47b94439fb0a85e06c7f8b05cb0 196 Pfam PF01081 KDPG and KHG aldolase 7 196 1.6E-72 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RA13_11395 0ea5f47b94439fb0a85e06c7f8b05cb0 196 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 7 185 3.9E-67 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RA13_16555 f809df83fb046b9e567923c286708405 367 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 16 179 5.5E-36 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 RA13_16555 f809df83fb046b9e567923c286708405 367 SUPERFAMILY SSF53756 59 362 6.67E-27 T 13-10-2018 RA13_16555 f809df83fb046b9e567923c286708405 367 Gene3D G3DSA:3.40.50.2000 183 347 1.8E-15 T 13-10-2018 RA13_00575 8669c05bebf892286345b7c60733c2e3 329 SUPERFAMILY SSF55469 142 324 1.44E-19 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_00575 8669c05bebf892286345b7c60733c2e3 329 Pfam PF00881 Nitroreductase family 146 324 9.2E-23 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_00575 8669c05bebf892286345b7c60733c2e3 329 Gene3D G3DSA:3.40.109.10 92 325 1.2E-42 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_00575 8669c05bebf892286345b7c60733c2e3 329 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 163 324 3.0E-41 T 13-10-2018 IPR020051 SagB-type dehydrogenase domain RA13_10155 3df7e3517434db9a2f517d3161da5001 157 Pfam PF00364 Biotin-requiring enzyme 80 152 9.9E-22 T 13-10-2018 IPR000089 Biotin/lipoyl attachment RA13_10155 3df7e3517434db9a2f517d3161da5001 157 SUPERFAMILY SSF51230 78 154 1.16E-21 T 13-10-2018 IPR011053 Single hybrid motif RA13_10155 3df7e3517434db9a2f517d3161da5001 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 84 97 5.2E-15 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RA13_10155 3df7e3517434db9a2f517d3161da5001 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 101 115 5.2E-15 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RA13_10155 3df7e3517434db9a2f517d3161da5001 157 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 116 129 5.2E-15 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RA13_10155 3df7e3517434db9a2f517d3161da5001 157 Gene3D G3DSA:2.40.50.100 77 154 2.0E-26 T 13-10-2018 RA13_10155 3df7e3517434db9a2f517d3161da5001 157 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 2 155 6.9E-64 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RA13_10155 3df7e3517434db9a2f517d3161da5001 157 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 111 128 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RA13_16415 d9b94c3f49598effa25f5427ea1697a2 259 SUPERFAMILY SSF56317 3 259 3.92E-71 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RA13_16415 d9b94c3f49598effa25f5427ea1697a2 259 Pfam PF00795 Carbon-nitrogen hydrolase 7 246 9.7E-46 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RA13_16415 d9b94c3f49598effa25f5427ea1697a2 259 Gene3D G3DSA:3.60.110.10 1 259 3.7E-87 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RA13_06390 e2e4c855ae73edff13e0eb5a14e73d23 170 Gene3D G3DSA:2.40.128.20 8 169 7.6E-81 T 13-10-2018 IPR012674 Calycin RA13_06390 e2e4c855ae73edff13e0eb5a14e73d23 170 Pfam PF05870 Phenolic acid decarboxylase (PAD) 10 166 3.2E-81 T 13-10-2018 IPR008729 Phenolic acid decarboxylase GO:0016831 RA13_06390 e2e4c855ae73edff13e0eb5a14e73d23 170 ProDom PD022010 DECARBOXYLASE ACID PHENOLIC P-COUMARIC LYASE 4.1.1.- PAD PADC FERULATE PROBABLE 9 169 3.0E-84 T 13-10-2018 IPR008729 Phenolic acid decarboxylase GO:0016831 RA13_06390 e2e4c855ae73edff13e0eb5a14e73d23 170 PIRSF PIRSF011561 1 170 5.0E-96 T 13-10-2018 IPR008729 Phenolic acid decarboxylase GO:0016831 RA13_06390 e2e4c855ae73edff13e0eb5a14e73d23 170 SUPERFAMILY SSF50814 5 168 3.52E-76 T 13-10-2018 IPR012674 Calycin RA13_07035 d963c2d454ff40022687eb6bcf6bd340 445 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 35 417 6.1E-127 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 RA13_07035 d963c2d454ff40022687eb6bcf6bd340 445 Pfam PF02386 Cation transport protein 36 430 1.1E-65 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RA13_05035 2b066d316c60bf28f8f5e0ad1642c9d0 221 SUPERFAMILY SSF51126 30 212 1.52E-61 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_05035 2b066d316c60bf28f8f5e0ad1642c9d0 221 Pfam PF03211 Pectate lyase 28 211 2.9E-57 T 13-10-2018 IPR004898 Pectate lyase PlyH/PlyE-like GO:0005576|GO:0030570 KEGG: 00040+4.2.2.2 RA13_05035 2b066d316c60bf28f8f5e0ad1642c9d0 221 Gene3D G3DSA:2.160.20.10 18 217 1.1E-69 T 13-10-2018 IPR012334 Pectin lyase fold RA13_07580 04f60eb6e106eff97f1f59271c7d0ba8 258 ProDom PD017229 LIGASE SYNTHASE BIOTIN MAGNESIUM PIMELOYL-COA 6-CARBOXYHEXANOATE--COA BIOSYNTHESIS 6-CARBOXYHEXANOATE-COA BIOW COA 1 224 4.0E-90 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 RA13_07580 04f60eb6e106eff97f1f59271c7d0ba8 258 TIGRFAM TIGR01204 bioW: 6-carboxyhexanoate--CoA ligase 21 251 7.3E-100 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 RA13_07580 04f60eb6e106eff97f1f59271c7d0ba8 258 Pfam PF03744 6-carboxyhexanoate--CoA ligase 7 250 3.6E-85 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 RA13_07580 04f60eb6e106eff97f1f59271c7d0ba8 258 Hamap MF_00668 6-carboxyhexanoate--CoA ligase [bioW]. 6 251 52.806 T 13-10-2018 IPR005499 6-carboxyhexanoate--CoA ligase GO:0005524|GO:0009102|GO:0042410 KEGG: 00780+6.2.1.14|MetaCyc: PWY-6578 RA13_08905 57d7ae76a553618144ba3664f47c0512 169 Gene3D G3DSA:3.30.70.1740 92 169 6.6E-29 T 13-10-2018 IPR038117 Bypass of forespore C, C-terminal domain superfamily RA13_08905 57d7ae76a553618144ba3664f47c0512 169 Gene3D G3DSA:3.10.20.420 37 91 4.5E-27 T 13-10-2018 IPR038118 Bypass-of-forespore C, N-terminal domain superfamily RA13_08905 57d7ae76a553618144ba3664f47c0512 169 Pfam PF08977 Bypass of Forespore C, N terminal 41 90 2.2E-25 T 13-10-2018 IPR015071 Bypass-of-forespore C, N-terminal RA13_08905 57d7ae76a553618144ba3664f47c0512 169 Pfam PF08955 BofC C-terminal domain 92 165 5.6E-27 T 13-10-2018 IPR015050 Bypass of forespore C, C-terminal RA13_17300 7e3291b9dc7e2bc8999d9bd76a91bbd3 458 Pfam PF05547 Immune inhibitor A peptidase M6 95 303 6.5E-26 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 RA13_17300 7e3291b9dc7e2bc8999d9bd76a91bbd3 458 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 82 370 1.6E-58 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 22 300 2.8E-113 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 Gene3D G3DSA:3.30.465.10 89 216 4.2E-48 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 Gene3D G3DSA:3.90.78.10 217 303 1.4E-34 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 Gene3D G3DSA:3.30.43.10 1 88 2.0E-31 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 SUPERFAMILY SSF56176 14 193 3.97E-44 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 SUPERFAMILY SSF56194 197 301 1.96E-35 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 201 299 3.9E-28 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 Pfam PF01565 FAD binding domain 35 164 1.0E-23 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RA13_15570 0a1c580e19f145d4f9bddd310791af0b 303 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 303 88.717 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RA13_02485 d3c833281466f348054660a89d97fdde 231 SUPERFAMILY SSF54593 4 118 7.01E-15 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_02485 d3c833281466f348054660a89d97fdde 231 Gene3D G3DSA:3.10.180.10 2 228 1.7E-64 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 Gene3D G3DSA:1.10.10.10 73 160 1.9E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 128 134 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 SUPERFAMILY SSF53155 4 83 2.16E-15 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 4 75 3.1E-15 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 Gene3D G3DSA:3.30.160.70 1 72 3.5E-16 T 13-10-2018 RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 78 158 1.5E-35 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 SUPERFAMILY SSF46767 77 160 2.22E-28 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 6 159 41.449 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 RA13_16430 065277661ef179f2f1e9be9f109a13ca 165 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 80 159 9.4E-29 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RA13_14910 13148e4140d69ef5c8f9f7c28e4a5d5e 269 Pfam PF01148 Cytidylyltransferase family 5 268 7.9E-73 T 13-10-2018 RA13_14910 13148e4140d69ef5c8f9f7c28e4a5d5e 269 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 226 252 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 RA13_09295 c20ce3f18008c5c6a009e3f33577bf45 125 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 1.2E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_09295 c20ce3f18008c5c6a009e3f33577bf45 125 SMART SM00345 17 76 4.3E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RA13_09295 c20ce3f18008c5c6a009e3f33577bf45 125 Gene3D G3DSA:1.10.10.10 10 125 1.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_09295 c20ce3f18008c5c6a009e3f33577bf45 125 SUPERFAMILY SSF46785 6 80 1.96E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_12830 4e813d31adfd84b2a77541f90600f11c 277 Pfam PF01145 SPFH domain / Band 7 family 35 218 3.7E-27 T 13-10-2018 IPR001107 Band 7 domain RA13_12830 4e813d31adfd84b2a77541f90600f11c 277 SUPERFAMILY SSF117892 66 203 3.14E-8 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily RA13_05560 b99fa939548ebc1c78208a4fce65a1df 305 Gene3D G3DSA:3.40.190.10 37 299 7.8E-99 T 13-10-2018 RA13_05560 b99fa939548ebc1c78208a4fce65a1df 305 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 35 300 6.9E-62 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RA13_05560 b99fa939548ebc1c78208a4fce65a1df 305 Gene3D G3DSA:3.40.190.120 139 243 7.8E-99 T 13-10-2018 RA13_05560 b99fa939548ebc1c78208a4fce65a1df 305 SUPERFAMILY SSF53850 34 303 1.05E-68 T 13-10-2018 RA13_16740 409ebfa96377b0992a015a94d2157dec 108 Pfam PF03551 Transcriptional regulator PadR-like family 15 85 1.1E-23 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal RA13_16740 409ebfa96377b0992a015a94d2157dec 108 Gene3D G3DSA:1.10.10.10 1 108 2.3E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_16740 409ebfa96377b0992a015a94d2157dec 108 SUPERFAMILY SSF46785 11 104 6.97E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_10585 c15ab3c28e838cfe18b4a15522c4983b 213 Pfam PF01944 Stage II sporulation protein M 25 203 1.8E-27 T 13-10-2018 IPR002798 Stage II sporulation protein M-like RA13_10585 c15ab3c28e838cfe18b4a15522c4983b 213 PIRSF PIRSF038973 1 213 9.4E-72 T 13-10-2018 IPR014196 Stage II sporulation protein M RA13_10585 c15ab3c28e838cfe18b4a15522c4983b 213 TIGRFAM TIGR02831 spo_II_M: stage II sporulation protein M 10 207 1.9E-79 T 13-10-2018 IPR014196 Stage II sporulation protein M RA13_19520 e7569cf5d86cdbecf70efbdc1ffc7087 221 Pfam PF00881 Nitroreductase family 13 201 3.0E-26 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RA13_19520 e7569cf5d86cdbecf70efbdc1ffc7087 221 SUPERFAMILY SSF55469 8 220 1.31E-55 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_19520 e7569cf5d86cdbecf70efbdc1ffc7087 221 Gene3D G3DSA:3.40.109.10 4 221 1.0E-60 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RA13_04470 8eb34b37f765d107f23daeb331284d1b 114 Pfam PF13789 Domain of unknown function (DUF4181) 18 110 1.8E-17 T 13-10-2018 IPR025441 Protein of unknown function DUF4181 RA13_21225 d1b5ea035fbf65af4c2253d823642ff6 606 Gene3D G3DSA:1.20.1740.10 37 469 8.0E-26 T 13-10-2018 RA13_21225 d1b5ea035fbf65af4c2253d823642ff6 606 Pfam PF13520 Amino acid permease 27 444 1.7E-35 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_04415 4991f382a168a2bc395119a633edcdfc 238 Pfam PF04493 Endonuclease V 23 223 8.1E-59 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 RA13_04415 4991f382a168a2bc395119a633edcdfc 238 Gene3D G3DSA:3.30.2170.10 1 238 1.6E-81 T 13-10-2018 RA13_04415 4991f382a168a2bc395119a633edcdfc 238 Hamap MF_00801 Endonuclease V [nfi]. 13 233 31.357 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 RA13_11870 4d3271d5197abcefcd242ccd7dfee6d8 298 SUPERFAMILY SSF103481 196 288 1.09E-9 T 13-10-2018 RA13_11870 4d3271d5197abcefcd242ccd7dfee6d8 298 Pfam PF00892 EamA-like transporter family 155 285 3.4E-9 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_11870 4d3271d5197abcefcd242ccd7dfee6d8 298 Pfam PF00892 EamA-like transporter family 8 146 2.6E-12 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_11870 4d3271d5197abcefcd242ccd7dfee6d8 298 SUPERFAMILY SSF103481 44 148 6.54E-10 T 13-10-2018 RA13_11870 4d3271d5197abcefcd242ccd7dfee6d8 298 TIGRFAM TIGR00688 rarD: protein RarD 7 262 2.3E-112 T 13-10-2018 IPR004626 RarD protein GO:0005887 RA13_19545 214228fdcdca3b7a60e08058ca29c7ef 124 Pfam PF09350 Domain of unknown function (DUF1992) 8 73 2.0E-22 T 13-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain RA13_02760 4c0693b9ca21d03bcf5a71ee4a4a8937 361 SUPERFAMILY SSF56601 36 340 1.91E-19 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_02760 4c0693b9ca21d03bcf5a71ee4a4a8937 361 Pfam PF13354 Beta-lactamase enzyme family 55 269 1.5E-14 T 13-10-2018 RA13_02760 4c0693b9ca21d03bcf5a71ee4a4a8937 361 Gene3D G3DSA:3.40.710.10 35 341 1.7E-28 T 13-10-2018 RA13_15795 25da86697d76847db1f127dca0a0948d 209 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 33 159 1.3E-17 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like RA13_15795 25da86697d76847db1f127dca0a0948d 209 TIGRFAM TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family 3 161 2.7E-47 T 13-10-2018 IPR014247 Sporulation lipoprotein YhcN/YlaJ GO:0030435 RA13_00980 0f38b0f9d7259bfce611f72c3eee56e1 132 SUPERFAMILY SSF56047 2 132 2.09E-49 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00980 0f38b0f9d7259bfce611f72c3eee56e1 132 Pfam PF00410 Ribosomal protein S8 5 132 1.4E-54 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00980 0f38b0f9d7259bfce611f72c3eee56e1 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_00980 0f38b0f9d7259bfce611f72c3eee56e1 132 Gene3D G3DSA:3.30.1370.30 4 74 2.4E-33 T 13-10-2018 RA13_00980 0f38b0f9d7259bfce611f72c3eee56e1 132 Gene3D G3DSA:3.30.1490.10 75 132 7.2E-27 T 13-10-2018 RA13_00980 0f38b0f9d7259bfce611f72c3eee56e1 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 33.007 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RA13_11585 22d2cc62cb7cb0b015c66a7fc5a1e1c8 256 Gene3D G3DSA:3.40.50.1110 17 251 8.0E-36 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RA13_11585 22d2cc62cb7cb0b015c66a7fc5a1e1c8 256 SUPERFAMILY SSF52266 39 250 1.83E-33 T 13-10-2018 RA13_11585 22d2cc62cb7cb0b015c66a7fc5a1e1c8 256 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 46 238 1.2E-23 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RA13_00540 a5fa37b1625ad2f44d545be156cec482 326 SUPERFAMILY SSF53474 45 323 5.87E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_00540 a5fa37b1625ad2f44d545be156cec482 326 Gene3D G3DSA:3.40.50.1820 49 325 1.3E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_09435 4e906dec43c08376c8a895ddc3a67014 208 Pfam PF09335 SNARE associated Golgi protein 53 171 3.6E-26 T 13-10-2018 IPR032816 SNARE associated Golgi protein RA13_06055 45e5ae2063dba09631df0d02ccb61aff 117 SUPERFAMILY SSF110455 6 112 5.49E-33 T 13-10-2018 RA13_06055 45e5ae2063dba09631df0d02ccb61aff 117 Pfam PF01751 Toprim domain 9 77 8.6E-7 T 13-10-2018 IPR006171 TOPRIM domain RA13_06055 45e5ae2063dba09631df0d02ccb61aff 117 SMART SM00493 7 81 2.0E-8 T 13-10-2018 IPR006171 TOPRIM domain RA13_06055 45e5ae2063dba09631df0d02ccb61aff 117 Gene3D G3DSA:3.40.1360.20 3 117 1.5E-43 T 13-10-2018 RA13_19945 b4f06329aeb66fa4e5e4061ee72e86ad 82 Pfam PF11007 Spore coat associated protein JA (CotJA) 33 68 7.9E-12 T 13-10-2018 IPR020256 Spore coat protein CotJA RA13_19945 b4f06329aeb66fa4e5e4061ee72e86ad 82 ProDom PD059966 COTJA SPORE PROTEIN-RELATED COAT-ASSOCIATED COTJAA JA 10 75 1.0E-30 T 13-10-2018 IPR020256 Spore coat protein CotJA RA13_15705 8b2f0f190131959501b05b55c54fb695 79 Pfam PF14003 YlbE-like protein 14 73 5.0E-28 T 13-10-2018 IPR025613 YlbE-like protein RA13_07530 5883f9141f80a49bce3bc2a1e4f56f7d 253 Gene3D G3DSA:3.40.50.300 1 245 4.9E-66 T 13-10-2018 RA13_07530 5883f9141f80a49bce3bc2a1e4f56f7d 253 SMART SM00382 32 220 2.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_07530 5883f9141f80a49bce3bc2a1e4f56f7d 253 Pfam PF00005 ABC transporter 23 171 2.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_07530 5883f9141f80a49bce3bc2a1e4f56f7d 253 SUPERFAMILY SSF52540 3 224 2.59E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_00305 fc9f8e7c25cbf489524c55c15d7d96f3 310 SUPERFAMILY SSF82282 12 309 5.36E-88 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RA13_00305 fc9f8e7c25cbf489524c55c15d7d96f3 310 PIRSF PIRSF037505 257 309 0.081 T 13-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 RA13_00305 fc9f8e7c25cbf489524c55c15d7d96f3 310 PIRSF PIRSF037505 78 122 230.0 T 13-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 RA13_00305 fc9f8e7c25cbf489524c55c15d7d96f3 310 PIRSF PIRSF037505 2 99 6.6E-5 T 13-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 RA13_00305 fc9f8e7c25cbf489524c55c15d7d96f3 310 Gene3D G3DSA:3.20.20.330 1 306 3.1E-115 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RA13_00305 fc9f8e7c25cbf489524c55c15d7d96f3 310 Pfam PF02574 Homocysteine S-methyltransferase 14 306 8.6E-85 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RA13_15085 c8024e33577799fcc6a63991d07bcb77 106 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 106 18.66 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RA13_15085 c8024e33577799fcc6a63991d07bcb77 106 Pfam PF02049 Flagellar hook-basal body complex protein FliE 22 106 4.4E-28 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RA13_15085 c8024e33577799fcc6a63991d07bcb77 106 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 4 106 2.2E-38 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RA13_15085 c8024e33577799fcc6a63991d07bcb77 106 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 70 86 2.8E-18 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RA13_15085 c8024e33577799fcc6a63991d07bcb77 106 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 91 104 2.8E-18 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RA13_15085 c8024e33577799fcc6a63991d07bcb77 106 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 36 52 2.8E-18 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 RA13_20625 487e96f57389768e2fe0101648b90733 142 Gene3D G3DSA:3.40.50.1820 20 141 3.5E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_02585 27c4d5c59b2a7be989a73cb761825872 298 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 6 292 2.0E-118 T 13-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 RA13_02585 27c4d5c59b2a7be989a73cb761825872 298 Gene3D G3DSA:3.20.20.150 2 295 1.9E-78 T 13-10-2018 RA13_02585 27c4d5c59b2a7be989a73cb761825872 298 Pfam PF01261 Xylose isomerase-like TIM barrel 58 231 1.2E-25 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RA13_02585 27c4d5c59b2a7be989a73cb761825872 298 SUPERFAMILY SSF51658 7 293 4.28E-53 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_02585 27c4d5c59b2a7be989a73cb761825872 298 Hamap MF_01672 Inosose dehydratase [iolE]. 1 295 56.285 T 13-10-2018 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 RA13_10115 0e151447cd411cf9792f0e0bc554c6ba 307 SUPERFAMILY SSF52540 40 260 3.0E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_10115 0e151447cd411cf9792f0e0bc554c6ba 307 Gene3D G3DSA:3.40.50.300 117 272 1.6E-24 T 13-10-2018 RA13_10115 0e151447cd411cf9792f0e0bc554c6ba 307 SMART SM00382 135 272 2.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_10115 0e151447cd411cf9792f0e0bc554c6ba 307 TIGRFAM TIGR02858 spore_III_AA: stage III sporulation protein AA 28 292 1.7E-124 T 13-10-2018 IPR014217 Sporulation stage III, protein AA RA13_10115 0e151447cd411cf9792f0e0bc554c6ba 307 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 140 232 1.0E-4 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RA13_15360 7ac6fbf585b2069a0f7e233de4b2db82 572 Pfam PF05670 Domain of unknown function (DUF814) 456 540 1.5E-29 T 13-10-2018 IPR008532 Domain of unknown function DUF814 RA13_15360 7ac6fbf585b2069a0f7e233de4b2db82 572 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 6 447 5.1E-165 T 13-10-2018 RA13_15360 7ac6fbf585b2069a0f7e233de4b2db82 572 Gene3D G3DSA:2.30.310.10 3 169 5.7E-68 T 13-10-2018 RA13_15360 7ac6fbf585b2069a0f7e233de4b2db82 572 Gene3D G3DSA:3.40.970.40 245 291 5.5E-21 T 13-10-2018 RA13_15360 7ac6fbf585b2069a0f7e233de4b2db82 572 Gene3D G3DSA:1.10.8.50 170 240 8.3E-25 T 13-10-2018 RA13_16145 8aae2df424a6a1b6aa2348364a13c420 79 PIRSF PIRSF037356 1 79 1.2E-34 T 13-10-2018 IPR014904 Protein of unknown function DUF1797 RA13_16145 8aae2df424a6a1b6aa2348364a13c420 79 Gene3D G3DSA:3.30.720.20 1 79 1.1E-36 T 13-10-2018 IPR038073 YkuJ-like superfamily RA13_16145 8aae2df424a6a1b6aa2348364a13c420 79 SUPERFAMILY SSF143567 2 79 3.53E-28 T 13-10-2018 IPR038073 YkuJ-like superfamily RA13_16145 8aae2df424a6a1b6aa2348364a13c420 79 Pfam PF08796 Protein of unknown function (DUF1797) 7 78 2.9E-25 T 13-10-2018 IPR014904 Protein of unknown function DUF1797 RA13_13540 84434065c1f5817d51e8027d56563d4b 275 Gene3D G3DSA:3.60.21.10 1 254 4.8E-15 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_13540 84434065c1f5817d51e8027d56563d4b 275 Pfam PF00149 Calcineurin-like phosphoesterase 1 226 8.6E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_13540 84434065c1f5817d51e8027d56563d4b 275 SUPERFAMILY SSF56300 6 238 1.08E-19 T 13-10-2018 RA13_02450 2dc57befc628e80aceef142d83d5a9b4 382 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 9.6E-165 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RA13_02450 2dc57befc628e80aceef142d83d5a9b4 382 Gene3D G3DSA:3.90.1510.10 42 276 7.7E-144 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 RA13_02450 2dc57befc628e80aceef142d83d5a9b4 382 SUPERFAMILY SSF110738 1 373 1.7E-144 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 RA13_02450 2dc57befc628e80aceef142d83d5a9b4 382 PIRSF PIRSF006078 1 378 1.7E-146 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RA13_02450 2dc57befc628e80aceef142d83d5a9b4 382 Pfam PF02595 Glycerate kinase family 3 373 3.8E-153 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RA13_02450 2dc57befc628e80aceef142d83d5a9b4 382 Gene3D G3DSA:3.40.50.10350 1 362 7.7E-144 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold RA13_02965 965b38c02b742df2467613e5e66f8084 414 Gene3D G3DSA:1.20.1250.20 227 414 4.2E-18 T 13-10-2018 RA13_02965 965b38c02b742df2467613e5e66f8084 414 SUPERFAMILY SSF103473 18 412 1.03E-38 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_02965 965b38c02b742df2467613e5e66f8084 414 Pfam PF11700 Vacuole effluxer Atg22 like 6 131 3.6E-13 T 13-10-2018 IPR024671 Autophagy-related protein 22-like RA13_02965 965b38c02b742df2467613e5e66f8084 414 Pfam PF11700 Vacuole effluxer Atg22 like 139 411 2.3E-47 T 13-10-2018 IPR024671 Autophagy-related protein 22-like RA13_02965 965b38c02b742df2467613e5e66f8084 414 Gene3D G3DSA:1.20.1250.20 11 203 2.3E-8 T 13-10-2018 RA13_00830 c112c90c6057f9a078b4a4af11646067 198 Pfam PF14089 KinB-signalling pathway activation in sporulation 17 195 1.9E-74 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 RA13_00830 c112c90c6057f9a078b4a4af11646067 198 PIRSF PIRSF029886 1 198 4.3E-80 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 RA13_00830 c112c90c6057f9a078b4a4af11646067 198 SMART SM01251 17 196 2.2E-113 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 RA13_19630 4fa8acc090e4ecdb40ed105b0509404d 419 Gene3D G3DSA:2.160.20.10 22 418 1.4E-182 T 13-10-2018 IPR012334 Pectin lyase fold RA13_19630 4fa8acc090e4ecdb40ed105b0509404d 419 SMART SM00656 105 352 1.4E-44 T 13-10-2018 IPR002022 Pectate lyase RA13_19630 4fa8acc090e4ecdb40ed105b0509404d 419 SUPERFAMILY SSF51126 23 416 6.87E-87 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor RA13_19630 4fa8acc090e4ecdb40ed105b0509404d 419 Pfam PF00544 Pectate lyase 130 344 3.5E-48 T 13-10-2018 IPR002022 Pectate lyase RA13_21520 5a1e23c62717c9ff06777103042e32aa 39 ProDom PD048351 COMPETENCE SPORULATION FACTOR PHOSPHATASE INHIBITOR RAPC REGULATOR C PHRC 1 39 2.0E-10 T 13-10-2018 IPR020243 Phosphatase RapC inhibitor, PhrC RA13_21520 5a1e23c62717c9ff06777103042e32aa 39 Pfam PF11131 Rap-phr extracellular signalling 3 39 9.8E-19 T 13-10-2018 IPR025899 Phosphatase RapC/F inhibitor, PhrC/F RA13_07670 8948f9937eb4d60c3bd5736115b0a51c 545 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 375 523 3.8E-31 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain RA13_07670 8948f9937eb4d60c3bd5736115b0a51c 545 Pfam PF01943 Polysaccharide biosynthesis protein 5 319 1.4E-75 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 RA13_07670 8948f9937eb4d60c3bd5736115b0a51c 545 PIRSF PIRSF038958 1 541 9.0E-159 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type RA13_14625 744285a07faaad66cdfe8a88b3041546 225 SMART SM00849 18 181 2.3E-33 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_14625 744285a07faaad66cdfe8a88b3041546 225 SUPERFAMILY SSF56281 7 214 5.11E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_14625 744285a07faaad66cdfe8a88b3041546 225 Pfam PF00753 Metallo-beta-lactamase superfamily 20 88 1.2E-8 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_14625 744285a07faaad66cdfe8a88b3041546 225 Gene3D G3DSA:3.60.15.10 8 222 2.0E-53 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 Gene3D G3DSA:3.40.50.1980 175 308 3.6E-47 T 13-10-2018 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 Gene3D G3DSA:3.40.50.1980 31 174 8.7E-44 T 13-10-2018 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 SUPERFAMILY SSF53807 31 308 1.08E-78 T 13-10-2018 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 Pfam PF01297 Zinc-uptake complex component A periplasmic 35 305 8.2E-71 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00690 Adhesin family signature 76 93 2.8E-41 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00690 Adhesin family signature 63 76 2.8E-41 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00690 Adhesin family signature 242 260 2.8E-41 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00690 Adhesin family signature 273 292 2.8E-41 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00690 Adhesin family signature 189 210 2.8E-41 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00690 Adhesin family signature 32 50 2.8E-41 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00691 Adhesin B signature 265 283 4.6E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00691 Adhesin B signature 32 53 4.6E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00691 Adhesin B signature 57 75 4.6E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00691 Adhesin B signature 189 206 4.6E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00691 Adhesin B signature 286 304 4.6E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_07325 eb25f6aa7ca3829f1985d3a1f7b5c663 308 PRINTS PR00691 Adhesin B signature 76 95 4.6E-21 T 13-10-2018 IPR006129 Adhesin B GO:0007155 RA13_05685 1efdbc05891e95632eb7bcd8b7a95959 269 Gene3D G3DSA:3.40.390.10 87 265 3.2E-14 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RA13_05685 1efdbc05891e95632eb7bcd8b7a95959 269 SUPERFAMILY SSF55486 103 262 4.55E-20 T 13-10-2018 RA13_05685 1efdbc05891e95632eb7bcd8b7a95959 269 Pfam PF13688 Metallo-peptidase family M12 101 247 2.5E-26 T 13-10-2018 RA13_06660 52dd32a0d1f96949bab0eebbd1cbdb3b 94 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 31 83 7.7E-20 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RA13_06660 52dd32a0d1f96949bab0eebbd1cbdb3b 94 PIRSF PIRSF028784 1 92 1.1E-34 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RA13_00070 541f68ebd1689c8ae758809d63f22357 192 Pfam PF02342 TerD domain 1 188 3.0E-83 T 13-10-2018 IPR003325 TerD domain RA13_00070 541f68ebd1689c8ae758809d63f22357 192 Gene3D G3DSA:2.60.60.30 19 187 4.4E-70 T 13-10-2018 RA13_02300 ec6a764fd1ad8830eae16a7d26e1aba2 171 Pfam PF07799 Protein of unknown function (DUF1643) 22 151 5.4E-19 T 13-10-2018 IPR012441 Protein of unknown function DUF1643 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 SUPERFAMILY SSF118215 30 441 1.24E-92 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 Gene3D G3DSA:1.10.3860.10 3 459 1.4E-98 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 PRINTS PR00173 Glutamate-aspartate symporter signature 233 252 8.8E-17 T 13-10-2018 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 PRINTS PR00173 Glutamate-aspartate symporter signature 369 388 8.8E-17 T 13-10-2018 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 PRINTS PR00173 Glutamate-aspartate symporter signature 106 131 8.8E-17 T 13-10-2018 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 PRINTS PR00173 Glutamate-aspartate symporter signature 76 96 8.8E-17 T 13-10-2018 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 PRINTS PR00173 Glutamate-aspartate symporter signature 396 416 8.8E-17 T 13-10-2018 RA13_18790 5edbdbab87f2db0142b838c7206279fb 464 Pfam PF00375 Sodium:dicarboxylate symporter family 32 441 9.8E-100 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RA13_08970 cb7bd67f7e8af4919c8287cb4f5ce0a3 112 Pfam PF06305 Lipopolysaccharide assembly protein A domain 24 84 4.3E-16 T 13-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RA13_00105 d4ec45c13966602697cc40365ad37d14 561 Gene3D G3DSA:3.20.20.80 5 473 1.2E-193 T 13-10-2018 RA13_00105 d4ec45c13966602697cc40365ad37d14 561 SMART SM00642 13 420 3.9E-150 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_00105 d4ec45c13966602697cc40365ad37d14 561 Pfam PF00128 Alpha amylase, catalytic domain 28 376 1.6E-117 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 RA13_00105 d4ec45c13966602697cc40365ad37d14 561 Gene3D G3DSA:3.90.400.10 105 174 1.2E-193 T 13-10-2018 RA13_00105 d4ec45c13966602697cc40365ad37d14 561 Pfam PF16657 Maltogenic Amylase, C-terminal domain 481 552 4.4E-7 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal RA13_00105 d4ec45c13966602697cc40365ad37d14 561 SUPERFAMILY SSF51011 481 558 1.83E-19 T 13-10-2018 RA13_00105 d4ec45c13966602697cc40365ad37d14 561 SUPERFAMILY SSF51445 3 478 5.86E-147 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily RA13_00105 d4ec45c13966602697cc40365ad37d14 561 Gene3D G3DSA:2.60.40.1180 482 561 2.2E-22 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 Gene3D G3DSA:1.20.1250.20 201 399 5.1E-24 T 13-10-2018 RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 SUPERFAMILY SSF103473 2 389 9.55E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 Pfam PF07690 Major Facilitator Superfamily 12 279 2.1E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 Gene3D G3DSA:1.20.1250.20 2 193 3.3E-38 T 13-10-2018 RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 PRINTS PR01035 Tetracycline resistance protein signature 163 183 2.5E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 PRINTS PR01035 Tetracycline resistance protein signature 340 363 2.5E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 PRINTS PR01035 Tetracycline resistance protein signature 13 29 2.5E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_14755 8e97e9bc727646fa9606c5a1353edd50 403 PRINTS PR01035 Tetracycline resistance protein signature 135 157 2.5E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 SUPERFAMILY SSF46785 167 256 4.85E-42 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 Hamap MF_00621 GTP-sensing transcriptional pleiotropic repressor CodY [codY]. 1 259 149.846 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 Pfam PF06018 CodY GAF-like domain 3 178 5.5E-83 T 13-10-2018 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 TIGRFAM TIGR02787 codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY 3 253 1.3E-130 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 Gene3D G3DSA:1.10.10.10 160 259 1.0E-47 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 Gene3D G3DSA:3.30.450.40 1 159 1.1E-73 T 13-10-2018 IPR029016 GAF-like domain superfamily RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 PIRSF PIRSF011572 1 257 5.8E-124 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 RA13_15100 f6a75e479bd51e79864cde6e1aece581 259 Pfam PF08222 CodY helix-turn-helix domain 198 257 5.4E-37 T 13-10-2018 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal RA13_14730 ada4f2b3dd12b63f918d7a46eb3b9f06 85 PIRSF PIRSF004764 1 85 1.6E-27 T 13-10-2018 IPR024702 Uncharacterised conserved protein YmfJ RA13_14730 ada4f2b3dd12b63f918d7a46eb3b9f06 85 Gene3D G3DSA:1.10.760.20 1 82 2.6E-31 T 13-10-2018 IPR038292 YmfJ/YflH superfamily RA13_14730 ada4f2b3dd12b63f918d7a46eb3b9f06 85 Pfam PF11588 Protein of unknown function (DUF3243) 3 80 7.1E-35 T 13-10-2018 IPR021637 Protein of unknown function DUF3243 RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 SMART SM01134 73 233 3.2E-64 T 13-10-2018 RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 Pfam PF00455 DeoR C terminal sensor domain 75 231 4.1E-48 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.0E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.0E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 SUPERFAMILY SSF100950 75 232 7.74E-32 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 SMART SM00420 6 58 3.7E-22 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 SUPERFAMILY SSF46785 5 61 1.48E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_16005 4f52bdcf3bc973d67a75f75fd03c7d3a 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 1.8E-15 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RA13_16320 991c086f2ba5fc4a927a61ebf41aab3b 165 PIRSF PIRSF027377 8 147 9.9E-62 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RA13_16320 991c086f2ba5fc4a927a61ebf41aab3b 165 Pfam PF14489 QueF-like protein 62 140 8.3E-36 T 13-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RA13_16320 991c086f2ba5fc4a927a61ebf41aab3b 165 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 165 72.866 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RA13_16320 991c086f2ba5fc4a927a61ebf41aab3b 165 Gene3D G3DSA:3.30.1130.10 21 165 1.9E-69 T 13-10-2018 RA13_16320 991c086f2ba5fc4a927a61ebf41aab3b 165 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 28 139 5.4E-55 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RA13_16320 991c086f2ba5fc4a927a61ebf41aab3b 165 SUPERFAMILY SSF55620 27 135 3.11E-29 T 13-10-2018 RA13_10135 4e2c90d84e19abb303fd75e767db64bf 402 Pfam PF09546 Stage III sporulation protein AE (spore_III_AE) 80 395 5.9E-108 T 13-10-2018 IPR014194 Sporulation stage III, protein AE RA13_10135 4e2c90d84e19abb303fd75e767db64bf 402 TIGRFAM TIGR02829 spore_III_AE: stage III sporulation protein AE 1 395 1.1E-157 T 13-10-2018 IPR014194 Sporulation stage III, protein AE RA13_19180 98d96df28588e82f19ecec31e32b6d8c 89 Pfam PF14043 WVELL protein 4 74 8.4E-37 T 13-10-2018 IPR026952 WVELL protein RA13_05265 093ae3881f26cb5436ab8cee8bdd1ff5 248 Pfam PF01061 ABC-2 type transporter 3 207 3.0E-19 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RA13_02985 cce3800debd04a78ef305d4cf48741e4 428 TIGRFAM TIGR00784 citMHS: citrate transporter 1 428 2.2E-223 T 13-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 RA13_02985 cce3800debd04a78ef305d4cf48741e4 428 Pfam PF03600 Citrate transporter 13 374 1.3E-50 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RA13_10505 ae04378f93150e109f21e0b52737f7a2 114 SUPERFAMILY SSF54909 5 103 4.22E-29 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_10505 ae04378f93150e109f21e0b52737f7a2 114 Gene3D G3DSA:3.30.70.100 10 102 2.5E-37 T 13-10-2018 RA13_10505 ae04378f93150e109f21e0b52737f7a2 114 Pfam PF03992 Antibiotic biosynthesis monooxygenase 12 84 4.8E-7 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RA13_02805 d9aa56b848253e846ba98dc526a91cd5 416 SUPERFAMILY SSF56059 112 319 4.04E-40 T 13-10-2018 RA13_02805 d9aa56b848253e846ba98dc526a91cd5 416 Pfam PF13535 ATP-grasp domain 145 296 3.3E-30 T 13-10-2018 RA13_02805 d9aa56b848253e846ba98dc526a91cd5 416 Gene3D G3DSA:3.30.470.20 103 416 5.8E-115 T 13-10-2018 RA13_02805 d9aa56b848253e846ba98dc526a91cd5 416 Gene3D G3DSA:3.40.50.20 1 102 1.0E-32 T 13-10-2018 RA13_18715 9214c4cb8584eaf1163736035ceb3894 191 PIRSF PIRSF016897 1 186 1.6E-70 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 RA13_18715 9214c4cb8584eaf1163736035ceb3894 191 Gene3D G3DSA:3.20.20.400 1 187 1.4E-72 T 13-10-2018 IPR035928 GlpP-like superfamily RA13_18715 9214c4cb8584eaf1163736035ceb3894 191 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 8 180 1.1E-65 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 RA13_18715 9214c4cb8584eaf1163736035ceb3894 191 SUPERFAMILY SSF110391 8 181 1.06E-62 T 13-10-2018 IPR035928 GlpP-like superfamily RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 Gene3D G3DSA:3.40.1690.10 223 360 6.3E-57 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 13 358 1.0E-136 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 SUPERFAMILY SSF160544 249 356 2.35E-42 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 15 37 1.2E-42 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 213 231 1.2E-42 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 233 250 1.2E-42 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 277 292 1.2E-42 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 307 328 1.2E-42 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RA13_14990 fa6cfdbb3b4a4d3642aa00e306fad5ad 360 Pfam PF01312 FlhB HrpN YscU SpaS Family 12 352 1.9E-132 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 RA13_16830 3ddf2c000ad205e0e5ce6d54b8e41541 712 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 65 223 9.8E-33 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RA13_01310 39b2bc23f7781409e037555a7902873d 167 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RA13_01310 39b2bc23f7781409e037555a7902873d 167 SUPERFAMILY SSF55083 3 139 1.18E-52 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RA13_01310 39b2bc23f7781409e037555a7902873d 167 Gene3D G3DSA:3.30.70.560 2 164 2.3E-57 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RA13_01310 39b2bc23f7781409e037555a7902873d 167 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 134 4.0E-39 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RA13_01310 39b2bc23f7781409e037555a7902873d 167 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 134 2.0E-48 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RA13_10555 ac2ba15f4fc410f995fcfabf212a0b49 117 Pfam PF01381 Helix-turn-helix 8 60 3.7E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_10555 ac2ba15f4fc410f995fcfabf212a0b49 117 Gene3D G3DSA:1.10.260.40 4 115 5.6E-20 T 13-10-2018 RA13_10555 ac2ba15f4fc410f995fcfabf212a0b49 117 SMART SM00530 5 60 1.3E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_10555 ac2ba15f4fc410f995fcfabf212a0b49 117 SUPERFAMILY SSF47413 4 66 1.45E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_12960 096dc1c15a71ca8f973a419667ba8c62 141 SUPERFAMILY SSF54637 2 139 9.74E-27 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_12960 096dc1c15a71ca8f973a419667ba8c62 141 Gene3D G3DSA:3.10.129.10 1 141 3.0E-33 T 13-10-2018 RA13_12960 096dc1c15a71ca8f973a419667ba8c62 141 Pfam PF01575 MaoC like domain 8 110 9.4E-27 T 13-10-2018 IPR002539 MaoC-like dehydratase domain RA13_10290 dc1895f808b19e82dcdb13c6568947e9 301 PIRSF PIRSF000428 1 300 1.1E-83 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RA13_10290 dc1895f808b19e82dcdb13c6568947e9 301 Gene3D G3DSA:3.40.718.10 2 297 3.5E-100 T 13-10-2018 RA13_10290 dc1895f808b19e82dcdb13c6568947e9 301 TIGRFAM TIGR02706 P_butyryltrans: phosphate butyryltransferase 3 296 2.0E-131 T 13-10-2018 IPR014079 Phosphate butyryltransferase GO:0016740|GO:0019605|GO:0050182 KEGG: 00650+2.3.1.19 RA13_10290 dc1895f808b19e82dcdb13c6568947e9 301 Pfam PF01515 Phosphate acetyl/butaryl transferase 77 292 8.4E-49 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RA13_10290 dc1895f808b19e82dcdb13c6568947e9 301 Pfam PF01515 Phosphate acetyl/butaryl transferase 5 75 1.8E-4 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RA13_10290 dc1895f808b19e82dcdb13c6568947e9 301 SUPERFAMILY SSF53659 4 296 4.11E-61 T 13-10-2018 RA13_17425 06ca129bc0dfef4cda3e14757d7b5467 146 Pfam PF10612 Spore coat protein Z 3 138 5.4E-32 T 13-10-2018 IPR019593 Spore coat protein Z/Y RA13_17585 4e1e6e1551906e32f80fe8c8106e0e4d 305 Gene3D G3DSA:1.10.3720.10 94 305 2.6E-22 T 13-10-2018 IPR035906 MetI-like superfamily RA13_17585 4e1e6e1551906e32f80fe8c8106e0e4d 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 121 305 3.2E-32 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_17585 4e1e6e1551906e32f80fe8c8106e0e4d 305 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 28 73 2.2E-19 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RA13_17585 4e1e6e1551906e32f80fe8c8106e0e4d 305 SUPERFAMILY SSF161098 99 286 2.35E-26 T 13-10-2018 IPR035906 MetI-like superfamily RA13_18445 d24864b05b9224b93fcbbe6b06a9a23f 69 PIRSF PIRSF037692 1 69 3.8E-36 T 13-10-2018 IPR017263 Uncharacterised conserved protein UCP037692 RA13_18445 d24864b05b9224b93fcbbe6b06a9a23f 69 ProDom PD056348 YHEE BH1143 1 69 2.0E-28 T 13-10-2018 IPR017263 Uncharacterised conserved protein UCP037692 RA13_18445 d24864b05b9224b93fcbbe6b06a9a23f 69 Pfam PF17277 Family of unknown function (DUF5342) 1 69 4.6E-33 T 13-10-2018 IPR017263 Uncharacterised conserved protein UCP037692 RA13_08295 0dbffb064c4db0e2400e8a08c277aead 322 Gene3D G3DSA:2.115.10.20 30 322 4.2E-95 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_08295 0dbffb064c4db0e2400e8a08c277aead 322 Pfam PF04616 Glycosyl hydrolases family 43 40 320 1.8E-50 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 RA13_08295 0dbffb064c4db0e2400e8a08c277aead 322 PIRSF PIRSF026534 1 322 1.7E-103 T 13-10-2018 IPR016840 Glycoside hydrolase, family 43, endo-1, 5-alpha-L-arabinosidase GO:0046558 RA13_08295 0dbffb064c4db0e2400e8a08c277aead 322 SUPERFAMILY SSF75005 39 320 1.83E-71 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily RA13_14325 c083553f7a0d8aad3d3308d056f40e05 886 Pfam PF14594 Siphovirus ReqiPepy6 Gp37-like protein 448 496 3.3E-6 T 13-10-2018 IPR029432 Siphovirus Gp37-like protein RA13_14325 c083553f7a0d8aad3d3308d056f40e05 886 Pfam PF06605 Prophage endopeptidase tail 46 480 5.6E-26 T 13-10-2018 IPR010572 Prophage tail endopeptidase RA13_14325 c083553f7a0d8aad3d3308d056f40e05 886 Gene3D G3DSA:2.60.40.10 553 648 7.4E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold RA13_14325 c083553f7a0d8aad3d3308d056f40e05 886 Pfam PF00041 Fibronectin type III domain 559 642 2.9E-6 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 RA13_14325 c083553f7a0d8aad3d3308d056f40e05 886 SUPERFAMILY SSF49265 559 642 2.55E-6 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RA13_12550 3dc816baac61116683bb6ae200c168c3 322 SUPERFAMILY SSF74650 15 319 8.16E-48 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RA13_12550 3dc816baac61116683bb6ae200c168c3 322 Gene3D G3DSA:2.70.98.10 2 322 2.8E-114 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RA13_12550 3dc816baac61116683bb6ae200c168c3 322 Pfam PF01263 Aldose 1-epimerase 22 319 1.2E-44 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RA13_16770 618456f35a70d5d493a530f2f8089ab9 296 Pfam PF00877 NlpC/P60 family 185 292 8.3E-27 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_16770 618456f35a70d5d493a530f2f8089ab9 296 Gene3D G3DSA:2.30.30.40 1 110 8.2E-37 T 13-10-2018 RA13_16770 618456f35a70d5d493a530f2f8089ab9 296 Gene3D G3DSA:2.30.30.40 111 168 7.3E-9 T 13-10-2018 RA13_16770 618456f35a70d5d493a530f2f8089ab9 296 SUPERFAMILY SSF54001 169 293 8.34E-39 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_16770 618456f35a70d5d493a530f2f8089ab9 296 Gene3D G3DSA:3.90.1720.10 169 296 4.7E-38 T 13-10-2018 RA13_16905 9970b983820e2e6965a888e8a383b3f4 192 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 5 148 7.1E-29 T 13-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 Gene3D G3DSA:3.40.630.10 166 491 2.7E-125 T 13-10-2018 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 SUPERFAMILY SSF52949 10 177 4.65E-35 T 13-10-2018 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 341 348 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 180 485 1.6E-115 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 PRINTS PR00481 Cytosol aminopeptidase signature 337 357 8.3E-52 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 PRINTS PR00481 Cytosol aminopeptidase signature 365 380 8.3E-52 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 PRINTS PR00481 Cytosol aminopeptidase signature 315 336 8.3E-52 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 PRINTS PR00481 Cytosol aminopeptidase signature 256 273 8.3E-52 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 PRINTS PR00481 Cytosol aminopeptidase signature 278 299 8.3E-52 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 1 494 35.662 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 16 142 3.6E-25 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 SUPERFAMILY SSF53187 176 490 4.27E-110 T 13-10-2018 RA13_06460 05e4cde1038957f32a4a2a1dc76edb8e 499 Gene3D G3DSA:3.40.220.10 1 156 5.7E-41 T 13-10-2018 RA13_09520 6c684b49d0f252753d51ba1d3d4930a7 44 Pfam PF14141 YqzM-like protein 2 43 2.8E-24 T 13-10-2018 IPR025416 YqzM-like protein RA13_12695 b8d11e667e6fb34fc6267a8825aa3edb 95 SUPERFAMILY SSF89360 1 86 2.88E-11 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RA13_12695 b8d11e667e6fb34fc6267a8825aa3edb 95 PIRSF PIRSF034852 1 95 4.1E-41 T 13-10-2018 IPR008326 Uncharacterised conserved protein UCP034852 RA13_09450 57c8c11af4b3ce6eae30a4f99fa59e85 243 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 27 230 6.3E-23 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RA13_09450 57c8c11af4b3ce6eae30a4f99fa59e85 243 Gene3D G3DSA:3.40.50.1110 17 237 3.7E-41 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RA13_09450 57c8c11af4b3ce6eae30a4f99fa59e85 243 SUPERFAMILY SSF52266 24 237 2.17E-37 T 13-10-2018 RA13_18670 68437082f64b431900c4c3aa1986b0ce 107 Gene3D G3DSA:3.10.450.390 26 106 8.0E-11 T 13-10-2018 RA13_18670 68437082f64b431900c4c3aa1986b0ce 107 Pfam PF13028 Protein of unknown function (DUF3889) 16 106 2.4E-29 T 13-10-2018 IPR024987 Protein of unknown function DUF3889 RA13_10015 60d95ea251b460c5f0a65ffe5a7da81c 190 TIGRFAM TIGR02228 sigpep_I_arch: signal peptidase I 2 165 1.3E-55 T 13-10-2018 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 RA13_10015 60d95ea251b460c5f0a65ffe5a7da81c 190 SUPERFAMILY SSF51306 36 91 6.28E-7 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RA13_10015 60d95ea251b460c5f0a65ffe5a7da81c 190 Pfam PF00717 Peptidase S24-like 43 93 2.6E-7 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RA13_10015 60d95ea251b460c5f0a65ffe5a7da81c 190 PRINTS PR00728 Eukaryotic signal peptidase (S26B) family signature 43 58 3.4E-8 T 13-10-2018 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 RA13_10015 60d95ea251b460c5f0a65ffe5a7da81c 190 PRINTS PR00728 Eukaryotic signal peptidase (S26B) family signature 101 112 3.4E-8 T 13-10-2018 IPR001733 Peptidase S26B GO:0006465|GO:0008233|GO:0016020 RA13_20200 c4fcb08bd8b67a3b632b8ea1abd1055f 258 ProDom PD113106 YVBI TRANSMEMBRANE MEMBRANE YEBC YBEC 61 248 4.0E-64 T 13-10-2018 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 SMART SM00028 259 292 9.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 SMART SM00028 139 172 60.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 SMART SM00028 220 253 1.8E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 SMART SM00028 99 132 18.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 SUPERFAMILY SSF48452 100 207 3.34E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 Pfam PF07719 Tetratricopeptide repeat 220 252 8.6E-7 T 13-10-2018 IPR013105 Tetratricopeptide repeat 2 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 Gene3D G3DSA:1.25.40.10 1 374 1.2E-118 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_00115 2fa0480f839b11f4cf6e80b044773858 375 SUPERFAMILY SSF48452 196 368 4.36E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_19480 cbb98ed728c3eba57a3d838647665136 71 Pfam PF06569 Protein of unknown function (DUF1128) 1 71 4.8E-32 T 13-10-2018 IPR009507 Protein of unknown function UPF0435 RA13_19480 cbb98ed728c3eba57a3d838647665136 71 Hamap MF_00829 UPF0435 protein . 4 71 19.835 T 13-10-2018 IPR009507 Protein of unknown function UPF0435 RA13_11485 e189c2da8f93d0a653ce0b4de795dab0 60 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 60 9.0E-25 T 13-10-2018 RA13_12125 d98bf53154e05d94d4defc8ee5f061f8 140 TIGRFAM TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin 10 135 3.1E-38 T 13-10-2018 IPR006480 Bacteriophage holin family RA13_12125 d98bf53154e05d94d4defc8ee5f061f8 140 Pfam PF05105 Bacteriophage holin family 18 124 1.6E-28 T 13-10-2018 IPR006480 Bacteriophage holin family RA13_12910 b208c2ae362ac91ad4c8e0e58172b253 241 Pfam PF01061 ABC-2 type transporter 5 205 1.4E-22 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RA13_12910 b208c2ae362ac91ad4c8e0e58172b253 241 PIRSF PIRSF006648 1 240 6.7E-24 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RA13_10110 85d51afad1e7cf241e02c126825651ee 93 Pfam PF10942 Protein of unknown function (DUF2619) 19 87 1.4E-26 T 13-10-2018 IPR020390 Uncharacterised protein family YqhV RA13_10110 85d51afad1e7cf241e02c126825651ee 93 ProDom PD064940 YQHV TRANSMEMBRANE MEMBRANE BH2798 12 76 2.0E-28 T 13-10-2018 IPR020390 Uncharacterised protein family YqhV RA13_10380 279969f3cd5fd0a98ae22190054dab30 244 Gene3D G3DSA:2.40.400.10 6 220 4.2E-7 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RA13_10380 279969f3cd5fd0a98ae22190054dab30 244 Pfam PF09844 Uncharacterized conserved protein (COG2071) 20 233 4.2E-75 T 13-10-2018 IPR018644 Protein of unknown function DUF2071 RA13_10380 279969f3cd5fd0a98ae22190054dab30 244 SUPERFAMILY SSF160104 12 162 3.92E-21 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RA13_11975 fab12327ff54dca51b5d33c782011373 171 Pfam PF08281 Sigma-70, region 4 107 159 3.9E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RA13_11975 fab12327ff54dca51b5d33c782011373 171 Gene3D G3DSA:1.10.10.10 85 165 4.5E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_11975 fab12327ff54dca51b5d33c782011373 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 162 9.8E-15 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_11975 fab12327ff54dca51b5d33c782011373 171 SUPERFAMILY SSF88659 83 165 6.17E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_10510 56b5e719c8ac11550ee6843333984d4c 319 Pfam PF13673 Acetyltransferase (GNAT) domain 47 141 1.6E-14 T 13-10-2018 IPR000182 GNAT domain RA13_10510 56b5e719c8ac11550ee6843333984d4c 319 Pfam PF04229 GrpB protein 153 312 1.0E-56 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase RA13_10510 56b5e719c8ac11550ee6843333984d4c 319 SUPERFAMILY SSF55729 14 136 1.17E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_10510 56b5e719c8ac11550ee6843333984d4c 319 Gene3D G3DSA:3.40.630.30 10 143 2.0E-18 T 13-10-2018 RA13_10510 56b5e719c8ac11550ee6843333984d4c 319 Gene3D G3DSA:3.30.460.10 150 319 1.6E-62 T 13-10-2018 RA13_10510 56b5e719c8ac11550ee6843333984d4c 319 SUPERFAMILY SSF81301 155 318 1.44E-56 T 13-10-2018 RA13_02120 6f1e2444a8e0bdd1a509457c958be213 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 128 1.9E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_02120 6f1e2444a8e0bdd1a509457c958be213 135 Gene3D G3DSA:3.10.180.10 1 135 3.8E-52 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_02120 6f1e2444a8e0bdd1a509457c958be213 135 SUPERFAMILY SSF54593 11 131 1.3E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_20805 0cae2fbdf8153c691f89fc38d22d4a88 342 Pfam PF00487 Fatty acid desaturase 53 292 6.1E-36 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RA13_05830 073048ed4ab2a9179d553a432b8d5b7f 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 168 6.4E-15 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RA13_05830 073048ed4ab2a9179d553a432b8d5b7f 176 Gene3D G3DSA:1.20.140.160 29 171 2.6E-13 T 13-10-2018 RA13_05830 073048ed4ab2a9179d553a432b8d5b7f 176 Pfam PF04545 Sigma-70, region 4 117 166 3.6E-11 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RA13_05830 073048ed4ab2a9179d553a432b8d5b7f 176 SUPERFAMILY SSF88659 105 171 2.24E-14 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RA13_14810 7316404b1330aa7c8d53189d3d0caac0 85 Pfam PF05239 PRC-barrel domain 1 80 1.8E-16 T 13-10-2018 IPR027275 PRC-barrel domain RA13_14810 7316404b1330aa7c8d53189d3d0caac0 85 SUPERFAMILY SSF50346 1 75 1.49E-12 T 13-10-2018 IPR011033 PRC-barrel-like superfamily RA13_14810 7316404b1330aa7c8d53189d3d0caac0 85 Gene3D G3DSA:2.30.30.240 1 79 1.3E-8 T 13-10-2018 RA13_14810 7316404b1330aa7c8d53189d3d0caac0 85 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 2 76 4.6E-28 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH RA13_10835 b82f85daaf1ce81b4c8617d846aaa55d 178 Pfam PF07670 Nucleoside recognition 46 146 4.6E-7 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RA13_15030 ff2fdbf8a5fc77ba216de8b714cf22a8 140 Pfam PF03748 Flagellar basal body-associated protein FliL 48 140 1.7E-19 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 RA13_08955 e6d92a0d9bf5bc8a3f1ef422d4293b6d 98 Pfam PF13797 Post-transcriptional regulator 9 87 2.8E-32 T 13-10-2018 IPR025716 Post-transcriptional regulator RA13_03790 a23dbdabdd6101bdb32ca6da8cad7ba9 142 Gene3D G3DSA:2.40.128.20 1 142 1.2E-50 T 13-10-2018 IPR012674 Calycin RA13_03790 a23dbdabdd6101bdb32ca6da8cad7ba9 142 SUPERFAMILY SSF50814 1 138 2.26E-39 T 13-10-2018 IPR012674 Calycin RA13_03790 a23dbdabdd6101bdb32ca6da8cad7ba9 142 Pfam PF09148 Domain of unknown function (DUF1934) 10 134 1.8E-30 T 13-10-2018 IPR015231 Protein of unknown function DUF1934 RA13_14530 16051f177ce299dcaae36ae4fdcbe5c2 115 Gene3D G3DSA:1.10.3730.20 1 109 3.6E-34 T 13-10-2018 RA13_14530 16051f177ce299dcaae36ae4fdcbe5c2 115 Pfam PF00893 Small Multidrug Resistance protein 4 94 2.0E-29 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RA13_14530 16051f177ce299dcaae36ae4fdcbe5c2 115 SUPERFAMILY SSF103481 6 106 2.75E-21 T 13-10-2018 RA13_19900 a1eb305bd1dd132706fd7283617968e1 306 SUPERFAMILY SSF161098 60 290 1.57E-53 T 13-10-2018 IPR035906 MetI-like superfamily RA13_19900 a1eb305bd1dd132706fd7283617968e1 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 292 1.4E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_19900 a1eb305bd1dd132706fd7283617968e1 306 Gene3D G3DSA:1.10.3720.10 56 298 1.4E-64 T 13-10-2018 IPR035906 MetI-like superfamily RA13_04805 775301708ccc7f343981d6c93100795b 225 Gene3D G3DSA:3.40.50.2020 103 225 2.1E-15 T 13-10-2018 RA13_04805 775301708ccc7f343981d6c93100795b 225 SUPERFAMILY SSF53271 69 223 4.46E-17 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like RA13_09675 5ac89e1c99f68c7a91b9f5eb950a54d6 136 SUPERFAMILY SSF53927 2 130 9.51E-48 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RA13_09675 5ac89e1c99f68c7a91b9f5eb950a54d6 136 Gene3D G3DSA:3.40.140.10 1 136 1.5E-60 T 13-10-2018 RA13_09675 5ac89e1c99f68c7a91b9f5eb950a54d6 136 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 93 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RA13_09675 5ac89e1c99f68c7a91b9f5eb950a54d6 136 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 5 129 4.0E-46 T 13-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 RA13_09675 5ac89e1c99f68c7a91b9f5eb950a54d6 136 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 103 3.0E-17 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RA13_06195 e69f966601d994697ffc951054589592 398 PRINTS PR01035 Tetracycline resistance protein signature 131 153 7.4E-26 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06195 e69f966601d994697ffc951054589592 398 PRINTS PR01035 Tetracycline resistance protein signature 159 179 7.4E-26 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06195 e69f966601d994697ffc951054589592 398 PRINTS PR01035 Tetracycline resistance protein signature 337 360 7.4E-26 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06195 e69f966601d994697ffc951054589592 398 PRINTS PR01035 Tetracycline resistance protein signature 16 32 7.4E-26 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06195 e69f966601d994697ffc951054589592 398 PRINTS PR01035 Tetracycline resistance protein signature 73 97 7.4E-26 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06195 e69f966601d994697ffc951054589592 398 PRINTS PR01035 Tetracycline resistance protein signature 249 269 7.4E-26 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06195 e69f966601d994697ffc951054589592 398 PRINTS PR01035 Tetracycline resistance protein signature 277 298 7.4E-26 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06195 e69f966601d994697ffc951054589592 398 Pfam PF07690 Major Facilitator Superfamily 10 266 1.5E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_06195 e69f966601d994697ffc951054589592 398 Gene3D G3DSA:1.20.1250.20 5 384 6.5E-78 T 13-10-2018 RA13_06195 e69f966601d994697ffc951054589592 398 SUPERFAMILY SSF103473 8 394 7.19E-78 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_05230 efc548414b6b8466e2671a7bb277435c 111 SUPERFAMILY SSF103481 6 101 1.57E-12 T 13-10-2018 RA13_05230 efc548414b6b8466e2671a7bb277435c 111 Gene3D G3DSA:1.10.3730.20 1 105 1.0E-19 T 13-10-2018 RA13_05230 efc548414b6b8466e2671a7bb277435c 111 Pfam PF00893 Small Multidrug Resistance protein 1 89 1.2E-21 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RA13_04200 510533ae699a5802dc9cd8295864db74 398 Gene3D G3DSA:3.90.1150.10 269 397 6.8E-39 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RA13_04200 510533ae699a5802dc9cd8295864db74 398 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 28 390 7.0E-127 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_04200 510533ae699a5802dc9cd8295864db74 398 SUPERFAMILY SSF53383 20 395 2.23E-128 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_04200 510533ae699a5802dc9cd8295864db74 398 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 20 393 8.0E-154 T 13-10-2018 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase RA13_04200 510533ae699a5802dc9cd8295864db74 398 PIRSF PIRSF000390 17 397 1.7E-120 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RA13_04200 510533ae699a5802dc9cd8295864db74 398 Gene3D G3DSA:3.40.640.10 7 268 2.4E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_12590 36033d96de87e8267a618394b5fbff9c 127 Pfam PF07098 Protein of unknown function (DUF1360) 11 108 1.8E-32 T 13-10-2018 IPR010773 Mycobacterium phage PG1, Gp7 RA13_05990 3ed289b1121ade538ec7a26d8d1eff68 80 ProDom PD065427 YUSU IG COIL COILED BH3491 1 80 6.0E-35 T 13-10-2018 IPR020393 Uncharacterised protein family YusU RA13_05990 3ed289b1121ade538ec7a26d8d1eff68 80 Pfam PF10835 Protein of unknown function (DUF2573) 3 79 1.9E-41 T 13-10-2018 IPR020393 Uncharacterised protein family YusU RA13_03230 d665fd2d03ab34dd9e2ae6743bba743f 395 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 141 383 3.8E-18 T 13-10-2018 IPR004299 Membrane bound O-acyl transferase, MBOAT RA13_03230 d665fd2d03ab34dd9e2ae6743bba743f 395 TIGRFAM TIGR04091 LTA_dltB: D-alanyl-lipoteichoic acid biosynthesis protein DltB 3 390 7.8E-161 T 13-10-2018 IPR024024 D-alanyl transfer protein DltB RA13_03230 d665fd2d03ab34dd9e2ae6743bba743f 395 PIRSF PIRSF016636 2 392 1.4E-86 T 13-10-2018 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB RA13_03230 d665fd2d03ab34dd9e2ae6743bba743f 395 PIRSF PIRSF500216 1 395 1.2E-169 T 13-10-2018 IPR024024 D-alanyl transfer protein DltB RA13_16985 ce6b64b100376666651ab612c808b4f7 127 SUPERFAMILY SSF116915 1 115 1.07E-44 T 13-10-2018 IPR036558 YqbG-like superfamily RA13_16985 ce6b64b100376666651ab612c808b4f7 127 Gene3D G3DSA:1.10.3230.10 1 127 3.2E-46 T 13-10-2018 IPR036558 YqbG-like superfamily RA13_16985 ce6b64b100376666651ab612c808b4f7 127 Pfam PF11436 Protein of unknown function (DUF3199) 2 125 4.5E-53 T 13-10-2018 IPR013514 Protein of unknown function DUF3199, YqbG RA13_03460 0c97a98a68ae4b27f2ef6702ddb617da 86 Pfam PF17368 Spore morphogenesis and germination protein YwcE 1 84 1.2E-39 T 13-10-2018 IPR020185 Spore morphogenesis/germination protein YwcE RA13_03460 0c97a98a68ae4b27f2ef6702ddb617da 86 ProDom PD062384 GERMINATION SPORE TRANSMEMBRANE MEMBRANE MORPHOGENESIS YWCE 1 85 1.0E-41 T 13-10-2018 IPR020185 Spore morphogenesis/germination protein YwcE RA13_09020 80d4ad93ff5f0a425c04037a12218edc 254 Gene3D G3DSA:3.40.50.720 1 254 4.4E-81 T 13-10-2018 RA13_09020 80d4ad93ff5f0a425c04037a12218edc 254 Pfam PF00899 ThiF family 6 158 1.5E-39 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RA13_09020 80d4ad93ff5f0a425c04037a12218edc 254 SUPERFAMILY SSF69572 4 244 3.14E-62 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RA13_13685 9f9f25055d620e45566bed1ab6f28476 148 SUPERFAMILY SSF159006 2 148 2.75E-23 T 13-10-2018 RA13_13685 9f9f25055d620e45566bed1ab6f28476 148 Gene3D G3DSA:2.30.30.290 47 148 6.7E-13 T 13-10-2018 IPR023385 YopX-like, C-terminal RA13_13685 9f9f25055d620e45566bed1ab6f28476 148 Pfam PF09643 YopX protein 5 145 6.7E-14 T 13-10-2018 IPR019096 YopX protein RA13_08160 d6c0da5ecfb94af217f247c5a912029b 210 Pfam PF02659 Putative manganese efflux pump 124 208 1.9E-10 T 13-10-2018 IPR003810 Putative manganese efflux pump RA13_08160 d6c0da5ecfb94af217f247c5a912029b 210 Pfam PF02659 Putative manganese efflux pump 2 82 1.6E-11 T 13-10-2018 IPR003810 Putative manganese efflux pump RA13_08160 d6c0da5ecfb94af217f247c5a912029b 210 TIGRFAM TIGR02840 spore_YtaF: putative sporulation protein YtaF 4 210 1.4E-76 T 13-10-2018 IPR014205 Sporulation protein YtaF RA13_03545 3dec68a4df3b4866dbbf35a3a7c26abb 268 Pfam PF00535 Glycosyl transferase family 2 4 163 1.4E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_03545 3dec68a4df3b4866dbbf35a3a7c26abb 268 Gene3D G3DSA:3.90.550.10 1 233 2.0E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_03545 3dec68a4df3b4866dbbf35a3a7c26abb 268 SUPERFAMILY SSF53448 2 205 1.44E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_06845 18bc4815f18b2f3c55adce114fb39b8a 225 Pfam PF04298 Putative neutral zinc metallopeptidase 4 218 1.6E-88 T 13-10-2018 IPR007395 Putative neutral zinc metallopeptidase RA13_15120 d05b9d50293cc1b7e5540c8f6c2e68c4 435 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 5 435 1.4E-249 T 13-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 RA13_15120 d05b9d50293cc1b7e5540c8f6c2e68c4 435 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 337 360 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 RA13_15120 d05b9d50293cc1b7e5540c8f6c2e68c4 435 Gene3D G3DSA:3.50.50.60 3 178 7.8E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_15120 d05b9d50293cc1b7e5540c8f6c2e68c4 435 Gene3D G3DSA:3.50.50.60 291 435 4.2E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_15120 d05b9d50293cc1b7e5540c8f6c2e68c4 435 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 6 434 36.635 T 13-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 RA13_15120 d05b9d50293cc1b7e5540c8f6c2e68c4 435 SUPERFAMILY SSF51905 3 367 2.23E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RA13_15120 d05b9d50293cc1b7e5540c8f6c2e68c4 435 Pfam PF01134 Glucose inhibited division protein A 6 367 2.3E-118 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 RA13_21915 22e1b0000c07f81211c48bbf0409ad24 154 SUPERFAMILY SSF46785 8 148 1.69E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_21915 22e1b0000c07f81211c48bbf0409ad24 154 Pfam PF01047 MarR family 48 96 6.3E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_21915 22e1b0000c07f81211c48bbf0409ad24 154 Gene3D G3DSA:1.10.10.10 2 154 5.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21915 22e1b0000c07f81211c48bbf0409ad24 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 6.8E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_21915 22e1b0000c07f81211c48bbf0409ad24 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 6.8E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_21915 22e1b0000c07f81211c48bbf0409ad24 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 6.8E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_21915 22e1b0000c07f81211c48bbf0409ad24 154 SMART SM00347 31 131 2.5E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_13120 7a5ce5876f89979ee7f6d67691ed815a 105 Pfam PF00085 Thioredoxin 11 101 2.3E-14 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 RA13_13120 7a5ce5876f89979ee7f6d67691ed815a 105 SUPERFAMILY SSF52833 4 102 1.63E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_13120 7a5ce5876f89979ee7f6d67691ed815a 105 Gene3D G3DSA:3.40.30.10 1 103 1.5E-21 T 13-10-2018 RA13_00450 6bab1087d0c6eb061ed0df8be1644a43 565 Gene3D G3DSA:3.90.550.10 2 264 2.4E-48 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_00450 6bab1087d0c6eb061ed0df8be1644a43 565 Pfam PF00535 Glycosyl transferase family 2 11 174 2.7E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_00450 6bab1087d0c6eb061ed0df8be1644a43 565 SUPERFAMILY SSF53448 10 234 1.41E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_13795 0db760819d02ecf59cf7afb825c64920 323 Pfam PF13479 AAA domain 19 211 3.2E-39 T 13-10-2018 RA13_14525 c05451f71f7e93ead3bcf6f6dd3b3879 104 SUPERFAMILY SSF103481 7 104 4.32E-19 T 13-10-2018 RA13_14525 c05451f71f7e93ead3bcf6f6dd3b3879 104 Pfam PF00893 Small Multidrug Resistance protein 4 95 6.3E-29 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RA13_14525 c05451f71f7e93ead3bcf6f6dd3b3879 104 Gene3D G3DSA:1.10.3730.20 3 104 5.6E-32 T 13-10-2018 RA13_03395 387484a08e274adcdc1ff174dfd1fb88 104 Pfam PF04341 Protein of unknown function, DUF485 13 95 4.3E-21 T 13-10-2018 IPR007436 Protein of unknown function DUF485 RA13_05980 6df20b4d0ff4afb223225e583b4a9ef7 147 Pfam PF14039 YusW-like protein 48 139 5.7E-23 T 13-10-2018 IPR025623 YusW-like protein RA13_01385 83db5110c98be5e0a12306350fcfc465 829 SMART SM00332 322 804 1.0E-8 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_01385 83db5110c98be5e0a12306350fcfc465 829 Gene3D G3DSA:3.60.40.10 588 829 3.5E-55 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_01385 83db5110c98be5e0a12306350fcfc465 829 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 622 806 7.6E-36 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_01385 83db5110c98be5e0a12306350fcfc465 829 SUPERFAMILY SSF81606 595 807 5.1E-21 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_01385 83db5110c98be5e0a12306350fcfc465 829 SMART SM00331 594 806 2.9E-42 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_01385 83db5110c98be5e0a12306350fcfc465 829 TIGRFAM TIGR02865 spore_II_E: stage II sporulation protein E 44 806 1.3E-303 T 13-10-2018 IPR014221 Sporulation stage II, protein E KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RA13_03710 de71636196658540b24302e9e6123e0a 276 Gene3D G3DSA:2.30.140.10 2 53 5.2E-26 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 RA13_03710 de71636196658540b24302e9e6123e0a 276 Gene3D G3DSA:3.40.50.150 54 275 9.4E-76 T 13-10-2018 RA13_03710 de71636196658540b24302e9e6123e0a 276 TIGRFAM TIGR00417 speE: spermidine synthase 5 270 4.9E-125 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 RA13_03710 de71636196658540b24302e9e6123e0a 276 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 4 276 41.756 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 RA13_03710 de71636196658540b24302e9e6123e0a 276 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 80 93 - T 13-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 RA13_03710 de71636196658540b24302e9e6123e0a 276 SUPERFAMILY SSF53335 4 275 2.05E-88 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_03710 de71636196658540b24302e9e6123e0a 276 Pfam PF17284 Spermidine synthase tetramerisation domain 4 56 2.9E-21 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 RA13_03710 de71636196658540b24302e9e6123e0a 276 Pfam PF01564 Spermine/spermidine synthase domain 59 237 8.8E-71 T 13-10-2018 RA13_14920 a8b9cd608965c20f8e4ee1815ecdd567 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 3.9E-82 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RA13_14920 a8b9cd608965c20f8e4ee1815ecdd567 185 Pfam PF01765 Ribosome recycling factor 21 183 1.5E-66 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 RA13_14920 a8b9cd608965c20f8e4ee1815ecdd567 185 SUPERFAMILY SSF55194 3 185 2.22E-73 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 RA13_14920 a8b9cd608965c20f8e4ee1815ecdd567 185 Gene3D G3DSA:1.10.132.20 12 182 2.7E-71 T 13-10-2018 RA13_14920 a8b9cd608965c20f8e4ee1815ecdd567 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 29.349 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RA13_14920 a8b9cd608965c20f8e4ee1815ecdd567 185 Gene3D G3DSA:3.30.1360.40 31 105 2.7E-71 T 13-10-2018 RA13_20005 ec3e1854df2ed48f4afc0a42b649bcab 985 Pfam PF13289 SIR2-like domain 108 248 8.8E-23 T 13-10-2018 IPR039444 SIR2-like domain RA13_20005 ec3e1854df2ed48f4afc0a42b649bcab 985 SUPERFAMILY SSF52467 18 235 1.73E-12 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RA13_04895 7f0e4e6333bacb806d19172b1e5957d9 282 Gene3D G3DSA:3.30.70.120 193 269 8.5E-24 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RA13_04895 7f0e4e6333bacb806d19172b1e5957d9 282 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 222 276 4.4E-20 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 RA13_04895 7f0e4e6333bacb806d19172b1e5957d9 282 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 14 216 1.8E-61 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_04895 7f0e4e6333bacb806d19172b1e5957d9 282 PIRSF PIRSF006483 1 282 2.1E-80 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT RA13_01175 f34818adee58a77821535e461369d1ea 158 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RA13_01175 f34818adee58a77821535e461369d1ea 158 Gene3D G3DSA:3.30.1330.50 1 158 1.8E-69 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RA13_01175 f34818adee58a77821535e461369d1ea 158 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 37.065 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RA13_01175 f34818adee58a77821535e461369d1ea 158 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 157 7.8E-73 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RA13_01175 f34818adee58a77821535e461369d1ea 158 Pfam PF02542 YgbB family 2 156 7.9E-66 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RA13_01175 f34818adee58a77821535e461369d1ea 158 SUPERFAMILY SSF69765 1 157 6.15E-67 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RA13_21550 29417d7db6ab0a27e8aa8befab1868cd 447 Gene3D G3DSA:3.30.1330.120 268 402 8.5E-111 T 13-10-2018 RA13_21550 29417d7db6ab0a27e8aa8befab1868cd 447 Gene3D G3DSA:1.10.4100.10 25 417 8.5E-111 T 13-10-2018 RA13_21550 29417d7db6ab0a27e8aa8befab1868cd 447 SUPERFAMILY SSF103378 4 427 1.2E-94 T 13-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 RA13_21550 29417d7db6ab0a27e8aa8befab1868cd 447 Pfam PF03972 MmgE/PrpD family 10 422 2.3E-95 T 13-10-2018 IPR005656 MmgE/PrpD GO:0016829 RA13_05815 d7016fe536080ca661c79b07cc5949c2 130 Pfam PF14184 Regulatory protein YrvL 3 125 3.9E-25 T 13-10-2018 IPR025912 Regulatory protein YrvL RA13_05815 d7016fe536080ca661c79b07cc5949c2 130 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 8 120 3.0E-32 T 13-10-2018 RA13_03010 bc63d7f368e6a76c380acee23a55b81a 220 Pfam PF13649 Methyltransferase domain 30 118 1.9E-11 T 13-10-2018 RA13_03010 bc63d7f368e6a76c380acee23a55b81a 220 Gene3D G3DSA:3.40.50.150 1 220 5.0E-48 T 13-10-2018 RA13_03010 bc63d7f368e6a76c380acee23a55b81a 220 SUPERFAMILY SSF53335 8 187 2.96E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_18250 34dc9e3ae3db09ec0a88a71785b48152 166 Gene3D G3DSA:3.30.70.3430 1 166 8.1E-73 T 13-10-2018 RA13_18250 34dc9e3ae3db09ec0a88a71785b48152 166 SUPERFAMILY SSF54909 66 162 1.4E-23 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_18250 34dc9e3ae3db09ec0a88a71785b48152 166 Pfam PF03992 Antibiotic biosynthesis monooxygenase 66 139 4.2E-15 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RA13_15720 a279c4faffc82178abf41eb14e67c6ab 149 Pfam PF00571 CBS domain 71 120 1.7E-13 T 13-10-2018 IPR000644 CBS domain RA13_15720 a279c4faffc82178abf41eb14e67c6ab 149 Pfam PF00571 CBS domain 4 56 6.0E-12 T 13-10-2018 IPR000644 CBS domain RA13_15720 a279c4faffc82178abf41eb14e67c6ab 149 Gene3D G3DSA:3.10.580.10 1 130 5.8E-36 T 13-10-2018 RA13_15720 a279c4faffc82178abf41eb14e67c6ab 149 SMART SM00116 11 60 9.5E-6 T 13-10-2018 IPR000644 CBS domain RA13_15720 a279c4faffc82178abf41eb14e67c6ab 149 SMART SM00116 77 124 8.8E-9 T 13-10-2018 IPR000644 CBS domain RA13_15720 a279c4faffc82178abf41eb14e67c6ab 149 SUPERFAMILY SSF54631 2 119 1.01E-32 T 13-10-2018 RA13_17310 63c62ce59ddffec51eae4ae5d69a6449 158 Pfam PF04740 LXG domain of WXG superfamily 2 147 4.7E-40 T 13-10-2018 IPR006829 LXG domain RA13_01915 6589fdcf0e0e380f30be2435c395ec21 306 SUPERFAMILY SSF103481 51 156 1.11E-10 T 13-10-2018 RA13_01915 6589fdcf0e0e380f30be2435c395ec21 306 SUPERFAMILY SSF103481 208 302 4.18E-11 T 13-10-2018 RA13_01915 6589fdcf0e0e380f30be2435c395ec21 306 Pfam PF00892 EamA-like transporter family 166 299 6.2E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_01915 6589fdcf0e0e380f30be2435c395ec21 306 Pfam PF00892 EamA-like transporter family 14 154 4.2E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_08560 e06d8e2000b1791c871afffbb4b7f173 151 Pfam PF00583 Acetyltransferase (GNAT) family 37 129 3.3E-14 T 13-10-2018 IPR000182 GNAT domain RA13_08560 e06d8e2000b1791c871afffbb4b7f173 151 SUPERFAMILY SSF55729 1 151 8.23E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_08560 e06d8e2000b1791c871afffbb4b7f173 151 Gene3D G3DSA:3.40.630.30 1 151 7.2E-45 T 13-10-2018 RA13_17680 28636dea92753631467526e36b367f5d 62 Pfam PF11151 Protein of unknown function (DUF2929) 2 55 1.1E-17 T 13-10-2018 IPR021324 Protein of unknown function DUF2929 RA13_02060 7168545a1f473ced7004da93da40f46a 127 Pfam PF01638 HxlR-like helix-turn-helix 22 109 6.0E-40 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RA13_02060 7168545a1f473ced7004da93da40f46a 127 SUPERFAMILY SSF46785 10 115 1.72E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_02060 7168545a1f473ced7004da93da40f46a 127 Gene3D G3DSA:1.10.10.10 1 114 2.9E-41 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_20340 8e025ad5aab39ab11d3d9dd1e7739739 319 SUPERFAMILY SSF53613 1 318 1.56E-82 T 13-10-2018 IPR029056 Ribokinase-like RA13_20340 8e025ad5aab39ab11d3d9dd1e7739739 319 Gene3D G3DSA:3.40.1190.20 2 319 6.7E-90 T 13-10-2018 IPR029056 Ribokinase-like RA13_20340 8e025ad5aab39ab11d3d9dd1e7739739 319 PRINTS PR00990 Ribokinase signature 31 50 2.3E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_20340 8e025ad5aab39ab11d3d9dd1e7739739 319 PRINTS PR00990 Ribokinase signature 186 201 2.3E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_20340 8e025ad5aab39ab11d3d9dd1e7739739 319 PRINTS PR00990 Ribokinase signature 225 236 2.3E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 RA13_20340 8e025ad5aab39ab11d3d9dd1e7739739 319 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 36 60 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RA13_20340 8e025ad5aab39ab11d3d9dd1e7739739 319 Pfam PF00294 pfkB family carbohydrate kinase 4 312 3.8E-83 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB RA13_19875 6e192eb9c8dd87558462a503164d8988 220 ProDom PD113327 YESU 3D-STRUCTURE 6 220 2.0E-101 T 13-10-2018 IPR015305 Protein of unknown function DUF1961 RA13_19875 6e192eb9c8dd87558462a503164d8988 220 Gene3D G3DSA:2.60.120.200 1 220 5.5E-95 T 13-10-2018 RA13_19875 6e192eb9c8dd87558462a503164d8988 220 SUPERFAMILY SSF49899 1 220 4.27E-113 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily RA13_19875 6e192eb9c8dd87558462a503164d8988 220 Pfam PF09224 Domain of unknown function (DUF1961) 7 214 7.7E-99 T 13-10-2018 IPR015305 Protein of unknown function DUF1961 RA13_21810 25f6222b92c1d677c8ba576fcb4ff55c 106 SUPERFAMILY SSF50022 8 105 1.05E-30 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RA13_21810 25f6222b92c1d677c8ba576fcb4ff55c 106 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 7 105 3.0E-32 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RA13_21810 25f6222b92c1d677c8ba576fcb4ff55c 106 Gene3D G3DSA:2.102.10.10 4 106 1.8E-26 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RA13_21810 25f6222b92c1d677c8ba576fcb4ff55c 106 Pfam PF00355 Rieske [2Fe-2S] domain 9 93 1.1E-14 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RA13_13185 23f08beefa10da665e553e3fa702712c 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 52 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RA13_13185 23f08beefa10da665e553e3fa702712c 193 SUPERFAMILY SSF48498 78 188 2.05E-20 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RA13_13185 23f08beefa10da665e553e3fa702712c 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 1.9E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_13185 23f08beefa10da665e553e3fa702712c 193 Gene3D G3DSA:1.10.357.10 2 191 3.2E-48 T 13-10-2018 RA13_13185 23f08beefa10da665e553e3fa702712c 193 Pfam PF16925 Bacterial transcriptional repressor C-terminal 79 186 5.7E-10 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RA13_13185 23f08beefa10da665e553e3fa702712c 193 SUPERFAMILY SSF46689 5 68 6.16E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RA13_13185 23f08beefa10da665e553e3fa702712c 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_13185 23f08beefa10da665e553e3fa702712c 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.8E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RA13_17990 3ac19c3babfd0aa3d3877367b69132be 392 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 252 3.3E-85 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 RA13_17990 3ac19c3babfd0aa3d3877367b69132be 392 Gene3D G3DSA:3.60.21.10 1 272 2.4E-78 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like RA13_17990 3ac19c3babfd0aa3d3877367b69132be 392 Pfam PF00149 Calcineurin-like phosphoesterase 1 223 4.3E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RA13_17990 3ac19c3babfd0aa3d3877367b69132be 392 SUPERFAMILY SSF56300 1 331 3.61E-55 T 13-10-2018 RA13_16550 88f5f03fbaf9c1dbfcdd0de40b30fb62 183 ProDom PD102989 YKOP PLASMID 1 182 2.0E-67 T 13-10-2018 RA13_18300 5ee4c8cfe90dbe5749e8ec27f19d3fc8 118 SUPERFAMILY SSF55194 18 104 8.85E-7 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 RA13_18300 5ee4c8cfe90dbe5749e8ec27f19d3fc8 118 Pfam PF12732 YtxH-like protein 8 92 2.6E-11 T 13-10-2018 IPR024623 Uncharacterised protein family YtxH RA13_07430 6bb9542237feeab68689e062bd783a2f 334 Gene3D G3DSA:3.40.190.10 25 128 3.2E-15 T 13-10-2018 RA13_07430 6bb9542237feeab68689e062bd783a2f 334 Gene3D G3DSA:3.40.190.10 145 332 3.0E-33 T 13-10-2018 RA13_07430 6bb9542237feeab68689e062bd783a2f 334 Pfam PF13379 NMT1-like family 31 262 5.1E-23 T 13-10-2018 RA13_07430 6bb9542237feeab68689e062bd783a2f 334 SUPERFAMILY SSF53850 33 256 1.7E-31 T 13-10-2018 RA13_10830 6166f3035d6f6eeaf48c7011040fc194 196 Pfam PF07670 Nucleoside recognition 43 150 2.0E-11 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RA13_01325 6f449920fdc1578e2acab9e5b26e37bd 280 Gene3D G3DSA:3.30.470.10 1 119 1.1E-36 T 13-10-2018 RA13_01325 6f449920fdc1578e2acab9e5b26e37bd 280 Gene3D G3DSA:3.20.10.10 127 278 7.7E-41 T 13-10-2018 RA13_01325 6f449920fdc1578e2acab9e5b26e37bd 280 ProSitePatterns PS00770 Aminotransferases class-IV signature. 180 209 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 RA13_01325 6f449920fdc1578e2acab9e5b26e37bd 280 SUPERFAMILY SSF56752 2 276 1.28E-71 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RA13_01325 6f449920fdc1578e2acab9e5b26e37bd 280 Pfam PF01063 Amino-transferase class IV 29 254 1.2E-49 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RA13_21675 5fb2f037e51747ac4b90dd5f5439755a 307 Pfam PF00892 EamA-like transporter family 155 296 2.6E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_21675 5fb2f037e51747ac4b90dd5f5439755a 307 Pfam PF00892 EamA-like transporter family 9 142 2.9E-25 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RA13_21675 5fb2f037e51747ac4b90dd5f5439755a 307 SUPERFAMILY SSF103481 50 143 3.01E-11 T 13-10-2018 RA13_21675 5fb2f037e51747ac4b90dd5f5439755a 307 SUPERFAMILY SSF103481 222 296 1.23E-9 T 13-10-2018 RA13_09110 8d96cdf4a37a01d559d72b166e42fe43 93 Hamap MF_01448 UPF0473 protein . 4 89 21.835 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 RA13_09110 8d96cdf4a37a01d559d72b166e42fe43 93 Pfam PF06949 Protein of unknown function (DUF1292) 13 87 1.6E-18 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 RA13_15270 b073a9354aa80ede5b72c87d2ee175ee 62 SUPERFAMILY SSF143800 1 61 3.73E-24 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15270 b073a9354aa80ede5b72c87d2ee175ee 62 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 62 19.888 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_15270 b073a9354aa80ede5b72c87d2ee175ee 62 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 4.8E-23 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_15270 b073a9354aa80ede5b72c87d2ee175ee 62 Gene3D G3DSA:2.30.170.40 19 62 3.4E-18 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15270 b073a9354aa80ede5b72c87d2ee175ee 62 Pfam PF00830 Ribosomal L28 family 3 58 6.7E-21 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_09380 3b099598080324f70875c9a7f4cdc986 149 Pfam PF07606 Protein of unknown function (DUF1569) 9 147 4.2E-8 T 13-10-2018 IPR011463 Protein of unknown function DUF1569 RA13_09380 3b099598080324f70875c9a7f4cdc986 149 Gene3D G3DSA:1.20.120.450 33 148 1.6E-6 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_10520 478fbdbff350c384ffe918f77f9bbdec 79 ProDom PD058987 CYTOSOLIC YQKC 21 79 2.0E-25 T 13-10-2018 IPR020157 Uncharacterised protein family YqkC RA13_10520 478fbdbff350c384ffe918f77f9bbdec 79 Pfam PF10827 Protein of unknown function (DUF2552) 2 79 5.9E-44 T 13-10-2018 IPR020157 Uncharacterised protein family YqkC RA13_19825 b3f8e25a514092bf5c4dabb11ab3e760 295 Gene3D G3DSA:1.10.3720.10 5 286 6.9E-77 T 13-10-2018 IPR035906 MetI-like superfamily RA13_19825 b3f8e25a514092bf5c4dabb11ab3e760 295 SUPERFAMILY SSF161098 13 295 7.19E-63 T 13-10-2018 IPR035906 MetI-like superfamily RA13_19825 b3f8e25a514092bf5c4dabb11ab3e760 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 288 1.2E-31 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_15475 6e5b334b5c6e26e8d93bc2f3194429ef 164 Pfam PF05103 DivIVA protein 3 133 9.0E-49 T 13-10-2018 IPR007793 DivIVA family RA13_15475 6e5b334b5c6e26e8d93bc2f3194429ef 164 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 36 7.7E-16 T 13-10-2018 IPR019933 DivIVA domain RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 Gene3D G3DSA:1.10.10.10 3 142 4.0E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 Pfam PF01047 MarR family 34 92 8.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 2.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 2.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 2.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 2.4E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 SUPERFAMILY SSF46785 19 139 4.07E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_05760 1bd42f9cebe32112e03a5de47628de02 143 SMART SM00347 27 127 2.2E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RA13_14365 a0d7e20baa2320734ec4fac1894a6068 378 SUPERFAMILY SSF48452 93 308 2.96E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_14365 a0d7e20baa2320734ec4fac1894a6068 378 Gene3D G3DSA:1.25.40.10 1 378 7.8E-119 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_14365 a0d7e20baa2320734ec4fac1894a6068 378 Pfam PF13181 Tetratricopeptide repeat 222 250 0.0029 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_14365 a0d7e20baa2320734ec4fac1894a6068 378 SMART SM00028 139 172 30.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_14365 a0d7e20baa2320734ec4fac1894a6068 378 SMART SM00028 262 295 340.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_14365 a0d7e20baa2320734ec4fac1894a6068 378 SMART SM00028 220 253 0.036 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_14365 a0d7e20baa2320734ec4fac1894a6068 378 SMART SM00028 180 213 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_15070 62ed739a71a0fadb00317dbc82d555bd 251 TIGRFAM TIGR03825 FliH_bacil: flagellar assembly protein FliH 1 249 2.0E-85 T 13-10-2018 IPR022524 Flagellar assembly FliH, Bacilli RA13_15070 62ed739a71a0fadb00317dbc82d555bd 251 Pfam PF02108 Flagellar assembly protein FliH 112 237 8.7E-17 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE RA13_21620 c55844cefaffc042f7d8ddace4ab7ac2 151 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 21 90 2.6E-5 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RA13_21620 c55844cefaffc042f7d8ddace4ab7ac2 151 SUPERFAMILY SSF50475 20 91 7.44E-7 T 13-10-2018 RA13_13425 da1b03c22471cef9b9c06dab21a7fa83 77 Pfam PF01471 Putative peptidoglycan binding domain 13 71 5.2E-13 T 13-10-2018 IPR002477 Peptidoglycan binding-like RA13_13425 da1b03c22471cef9b9c06dab21a7fa83 77 SUPERFAMILY SSF47090 12 72 1.15E-13 T 13-10-2018 IPR036365 PGBD-like superfamily RA13_13425 da1b03c22471cef9b9c06dab21a7fa83 77 Gene3D G3DSA:1.10.101.10 5 77 1.6E-14 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RA13_03585 94f10a52cda1d754e0338f2b222d8199 475 Gene3D G3DSA:3.40.50.2000 285 441 2.2E-6 T 13-10-2018 RA13_03585 94f10a52cda1d754e0338f2b222d8199 475 Pfam PF05159 Capsule polysaccharide biosynthesis protein 310 390 3.7E-5 T 13-10-2018 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 RA13_03585 94f10a52cda1d754e0338f2b222d8199 475 Gene3D G3DSA:3.40.50.2000 255 284 2.2E-6 T 13-10-2018 RA13_03585 94f10a52cda1d754e0338f2b222d8199 475 SUPERFAMILY SSF53756 174 462 5.46E-19 T 13-10-2018 RA13_19755 e0bbe91ecff80f65a183c2ce9abdf5e3 246 Pfam PF01061 ABC-2 type transporter 8 204 3.5E-23 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RA13_19755 e0bbe91ecff80f65a183c2ce9abdf5e3 246 PIRSF PIRSF006648 2 245 7.0E-18 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RA13_16950 d3867a9504a40a11108ecbfbb9006b03 148 Pfam PF08890 Phage XkdN-like tail assembly chaperone protein, TAC 12 147 3.9E-39 T 13-10-2018 IPR014986 Clostridium phage phiCD119, XkdN RA13_16950 d3867a9504a40a11108ecbfbb9006b03 148 Gene3D G3DSA:3.30.2220.30 16 136 1.6E-48 T 13-10-2018 IPR038559 Clostridium phage phiCD119, XkdN superfamily RA13_21925 0df996265520a4bad21be6b14ee5995b 541 Pfam PF02652 L-lactate permease 14 535 3.9E-207 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RA13_21925 0df996265520a4bad21be6b14ee5995b 541 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 4 537 4.0E-206 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RA13_02820 c26d5c8e6993a27d86cfc83081e40cac 434 Pfam PF00155 Aminotransferase class I and II 38 415 8.2E-31 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RA13_02820 c26d5c8e6993a27d86cfc83081e40cac 434 SUPERFAMILY SSF53383 32 421 2.99E-62 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RA13_02820 c26d5c8e6993a27d86cfc83081e40cac 434 Gene3D G3DSA:3.40.640.10 4 427 4.8E-114 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RA13_15285 0f53b40f577af9399d37c8921a2886a4 217 Gene3D G3DSA:3.20.20.70 1 217 2.7E-89 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_15285 0f53b40f577af9399d37c8921a2886a4 217 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RA13_15285 0f53b40f577af9399d37c8921a2886a4 217 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 133 155 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RA13_15285 0f53b40f577af9399d37c8921a2886a4 217 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 201 1.7E-90 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RA13_15285 0f53b40f577af9399d37c8921a2886a4 217 PIRSF PIRSF001461 1 217 1.6E-98 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RA13_15285 0f53b40f577af9399d37c8921a2886a4 217 SUPERFAMILY SSF51366 1 214 1.1E-75 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RA13_15285 0f53b40f577af9399d37c8921a2886a4 217 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 3 214 3.1E-94 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RA13_10525 67aa0cf025a74fb3b01bdd37013d7d9f 303 SUPERFAMILY SSF53474 53 301 2.59E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_10525 67aa0cf025a74fb3b01bdd37013d7d9f 303 Gene3D G3DSA:3.40.50.1820 52 302 1.9E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_10525 67aa0cf025a74fb3b01bdd37013d7d9f 303 Pfam PF12146 Serine aminopeptidase, S33 81 194 2.8E-11 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 RA13_15575 1737c31f29fc423e768a5b4ba7b273f6 364 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 3 363 33.625 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15575 1737c31f29fc423e768a5b4ba7b273f6 364 Gene3D G3DSA:3.40.50.2000 178 347 2.9E-49 T 13-10-2018 RA13_15575 1737c31f29fc423e768a5b4ba7b273f6 364 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 359 2.0E-111 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15575 1737c31f29fc423e768a5b4ba7b273f6 364 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 3 143 1.4E-50 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RA13_15575 1737c31f29fc423e768a5b4ba7b273f6 364 Gene3D G3DSA:3.40.50.2000 1 177 6.7E-61 T 13-10-2018 RA13_15575 1737c31f29fc423e768a5b4ba7b273f6 364 SUPERFAMILY SSF53756 1 362 1.28E-108 T 13-10-2018 RA13_15575 1737c31f29fc423e768a5b4ba7b273f6 364 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 188 354 5.7E-43 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RA13_15670 93b3d7c9d8451d5baabe12cfe2b40bcd 259 SUPERFAMILY SSF52151 3 252 7.59E-53 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RA13_15670 93b3d7c9d8451d5baabe12cfe2b40bcd 259 Pfam PF01734 Patatin-like phospholipase 8 164 1.9E-21 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RA13_15670 93b3d7c9d8451d5baabe12cfe2b40bcd 259 Gene3D G3DSA:3.40.1090.10 1 102 1.2E-23 T 13-10-2018 RA13_15670 93b3d7c9d8451d5baabe12cfe2b40bcd 259 ProSitePatterns PS01237 Uncharacterized protein family UPF0028 signature. 11 43 - T 13-10-2018 IPR001423 Lysophospholipase patatin, conserved site GO:0004622|GO:0046470 Reactome: R-HSA-6814848 RA13_15945 b7d002948a225f9961cf2f2c3d163ec9 278 SUPERFAMILY SSF110857 126 254 3.66E-18 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily RA13_15945 b7d002948a225f9961cf2f2c3d163ec9 278 Pfam PF13772 AIG2-like family 185 265 3.7E-11 T 13-10-2018 RA13_15945 b7d002948a225f9961cf2f2c3d163ec9 278 SUPERFAMILY SSF110857 4 119 3.01E-23 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily RA13_15945 b7d002948a225f9961cf2f2c3d163ec9 278 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 114 1.3E-17 T 13-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like RA13_15945 b7d002948a225f9961cf2f2c3d163ec9 278 Gene3D G3DSA:3.10.490.10 119 278 3.6E-64 T 13-10-2018 RA13_15945 b7d002948a225f9961cf2f2c3d163ec9 278 Gene3D G3DSA:3.10.490.10 1 117 3.0E-29 T 13-10-2018 RA13_09125 15b3b478bafe0259107454a1cb300193 309 Pfam PF01136 Peptidase family U32 76 306 3.6E-66 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RA13_17615 ca5556da8ae96624fd71c4e45e7df665 304 Gene3D G3DSA:1.10.3720.10 90 299 2.8E-19 T 13-10-2018 IPR035906 MetI-like superfamily RA13_17615 ca5556da8ae96624fd71c4e45e7df665 304 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 26 77 6.8E-15 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RA13_17615 ca5556da8ae96624fd71c4e45e7df665 304 SUPERFAMILY SSF161098 95 287 4.06E-25 T 13-10-2018 IPR035906 MetI-like superfamily RA13_17615 ca5556da8ae96624fd71c4e45e7df665 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 301 2.1E-29 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_18065 229badf07d77bf37aa435d2a6bcd1cbc 90 Pfam PF05901 Excalibur calcium-binding domain 35 89 3.4E-13 T 13-10-2018 IPR008613 Excalibur calcium-binding domain RA13_18065 229badf07d77bf37aa435d2a6bcd1cbc 90 SMART SM00894 34 89 5.0E-4 T 13-10-2018 IPR008613 Excalibur calcium-binding domain RA13_06245 eee5cbd1b6b8c0e3b87d3ef7eacde551 845 Pfam PF04738 Lantibiotic dehydratase, C terminus 509 752 4.8E-16 T 13-10-2018 IPR006827 Lantibiotic dehydratase, N-terminal RA13_12755 a91e1febd7ef6e9f16909550a1f2c0c5 163 PIRSF PIRSF021441 1 162 6.1E-70 T 13-10-2018 IPR031306 CcdC protein RA13_12755 a91e1febd7ef6e9f16909550a1f2c0c5 163 Pfam PF07301 Protein of unknown function (DUF1453) 8 151 6.6E-59 T 13-10-2018 IPR009916 Protein of unknown function DUF1453 RA13_09800 84e5f45b777cc56be6e5321908e3d324 253 Pfam PF06691 Protein of unknown function (DUF1189) 4 243 2.1E-71 T 13-10-2018 IPR009574 Protein of unknown function DUF1189 RA13_06440 4ea20dd6cc02d3df42d716aa249cc0e7 47 SUPERFAMILY SSF57938 7 40 2.88E-6 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RA13_06440 4ea20dd6cc02d3df42d716aa249cc0e7 47 Pfam PF17302 Family of unknown function (DUF5351) 12 40 8.1E-15 T 13-10-2018 IPR035272 Protein of unknown function DUF5351 RA13_06440 4ea20dd6cc02d3df42d716aa249cc0e7 47 ProDom PD049837 YUIA BH3406 1 39 6.0E-9 T 13-10-2018 IPR035272 Protein of unknown function DUF5351 RA13_06440 4ea20dd6cc02d3df42d716aa249cc0e7 47 Gene3D G3DSA:2.10.230.20 3 45 1.6E-5 T 13-10-2018 RA13_01475 033c4a9aadc3189224af2851a3420009 125 Gene3D G3DSA:3.30.1330.40 2 125 8.2E-57 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RA13_01475 033c4a9aadc3189224af2851a3420009 125 Pfam PF01042 Endoribonuclease L-PSP 7 123 2.7E-48 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RA13_01475 033c4a9aadc3189224af2851a3420009 125 SUPERFAMILY SSF55298 2 124 5.81E-48 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RA13_01475 033c4a9aadc3189224af2851a3420009 125 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 123 2.2E-56 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 RA13_01475 033c4a9aadc3189224af2851a3420009 125 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 100 118 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 RA13_06680 90a1d7514132d284e55c574c59545bec 143 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 10 134 5.1E-35 T 13-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RA13_06680 90a1d7514132d284e55c574c59545bec 143 TIGRFAM TIGR00943 2a6301s02: monovalent cation:proton antiporter 29 135 2.1E-43 T 13-10-2018 IPR005281 Monovalent cation:proton antiporter, subunit B GO:0006812|GO:0008324|GO:0016021 RA13_11850 fa32ff1b5d53e9d472ac601df6f598a1 129 Gene3D G3DSA:3.30.429.10 1 129 1.6E-48 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily RA13_11850 fa32ff1b5d53e9d472ac601df6f598a1 129 Pfam PF14552 Tautomerase enzyme 38 118 4.6E-31 T 13-10-2018 IPR037479 Tautomerase, MSAD family RA13_11850 fa32ff1b5d53e9d472ac601df6f598a1 129 SUPERFAMILY SSF55331 2 128 1.02E-39 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily RA13_04150 8f1c910abb9db3415e2a8e30a2269b67 134 Gene3D G3DSA:1.10.10.10 1 134 8.0E-57 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_04150 8f1c910abb9db3415e2a8e30a2269b67 134 SUPERFAMILY SSF46785 5 129 8.4E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_04150 8f1c910abb9db3415e2a8e30a2269b67 134 Pfam PF02082 Transcriptional regulator 1 78 4.8E-18 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type RA13_07075 9289a6f7aa9f141fdf2b9a74a47ee73c 159 Gene3D G3DSA:1.20.120.450 1 158 2.9E-37 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_07075 9289a6f7aa9f141fdf2b9a74a47ee73c 159 SUPERFAMILY SSF109854 2 158 1.19E-28 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_07075 9289a6f7aa9f141fdf2b9a74a47ee73c 159 Pfam PF12867 DinB superfamily 5 152 1.1E-21 T 13-10-2018 IPR024775 DinB-like domain RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 Gene3D G3DSA:3.30.1240.10 86 192 1.5E-92 T 13-10-2018 RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 SUPERFAMILY SSF56784 1 269 4.14E-77 T 13-10-2018 IPR036412 HAD-like superfamily RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 236 4.2E-28 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 Gene3D G3DSA:3.40.50.1000 3 263 1.5E-92 T 13-10-2018 IPR023214 HAD superfamily RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 263 3.4E-70 T 13-10-2018 IPR000150 Cof family GO:0016787 RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 263 2.7E-71 T 13-10-2018 RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 ProSitePatterns PS01229 Hypothetical cof family signature 2. 217 239 - T 13-10-2018 RA13_02670 97945aeb64580526ccbdeb02963cf77e 270 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 13-10-2018 RA13_05825 e11abfd09c0c847fc5191721f7e5bd72 51 Pfam PF12841 YvrJ protein family 12 46 9.1E-17 T 13-10-2018 IPR024419 Protein of unknown function YvrJ RA13_02935 95930e2eec424dccf4bcd471c376d8b8 173 Pfam PF11193 Protein of unknown function (DUF2812) 17 115 7.2E-25 T 13-10-2018 IPR021359 Protein of unknown function DUF2812 RA13_08315 74a3272e25baa20f754a3122b287e5da 252 SUPERFAMILY SSF56281 5 241 2.22E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_08315 74a3272e25baa20f754a3122b287e5da 252 Pfam PF00753 Metallo-beta-lactamase superfamily 33 227 2.4E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_08315 74a3272e25baa20f754a3122b287e5da 252 SMART SM00849 34 237 6.4E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase RA13_08315 74a3272e25baa20f754a3122b287e5da 252 Gene3D G3DSA:3.60.15.10 1 242 2.9E-82 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_01210 c20d97d8267e7cf710fae34d7e2b16c0 185 Gene3D G3DSA:4.10.860.10 136 185 4.2E-6 T 13-10-2018 RA13_01210 c20d97d8267e7cf710fae34d7e2b16c0 185 SUPERFAMILY SSF46600 139 175 1.7E-6 T 13-10-2018 IPR036876 UVR domain superfamily RA13_01210 c20d97d8267e7cf710fae34d7e2b16c0 185 Pfam PF02151 UvrB/uvrC motif 140 172 3.8E-8 T 13-10-2018 IPR001943 UVR domain GO:0005515 RA13_01210 c20d97d8267e7cf710fae34d7e2b16c0 185 PIRSF PIRSF015034 1 182 1.2E-75 T 13-10-2018 IPR025542 YacH protein RA13_12925 0ac7ec9b56ab584a48bdc2c8ebd26fec 146 Pfam PF04397 LytTr DNA-binding domain 52 144 1.4E-19 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RA13_12925 0ac7ec9b56ab584a48bdc2c8ebd26fec 146 SMART SM00850 48 145 9.9E-23 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RA13_12925 0ac7ec9b56ab584a48bdc2c8ebd26fec 146 Gene3D G3DSA:2.40.50.40 39 108 2.4E-9 T 13-10-2018 RA13_11690 426867c3b196b8889b6792c606b20427 385 SUPERFAMILY SSF50956 37 381 2.48E-90 T 13-10-2018 RA13_11690 426867c3b196b8889b6792c606b20427 385 Gene3D G3DSA:2.120.10.30 32 383 1.9E-145 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RA13_11690 426867c3b196b8889b6792c606b20427 385 Pfam PF02333 Phytase 6 382 1.9E-198 T 13-10-2018 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 RA13_18095 79386708aaf04188c39a082751712190 354 Pfam PF16113 Enoyl-CoA hydratase/isomerase 15 346 3.5E-116 T 13-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 RA13_18095 79386708aaf04188c39a082751712190 354 Gene3D G3DSA:3.90.226.10 4 353 3.6E-113 T 13-10-2018 RA13_18095 79386708aaf04188c39a082751712190 354 SUPERFAMILY SSF52096 2 325 3.17E-58 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_11745 c9451989fcbd6db30efa83e2474f8a51 275 Pfam PF00583 Acetyltransferase (GNAT) family 162 232 7.7E-8 T 13-10-2018 IPR000182 GNAT domain RA13_11745 c9451989fcbd6db30efa83e2474f8a51 275 SUPERFAMILY SSF55729 129 274 3.14E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_11745 c9451989fcbd6db30efa83e2474f8a51 275 Gene3D G3DSA:3.40.630.30 124 268 1.9E-11 T 13-10-2018 RA13_11745 c9451989fcbd6db30efa83e2474f8a51 275 TIGRFAM TIGR03827 GNAT_ablB: putative beta-lysine N-acetyltransferase 13 275 2.9E-94 T 13-10-2018 IPR022525 Beta-lysine N-acetyltransferase GO:0016407 RA13_03690 dff960d9680f0b8e0f86ce776f9d70d5 62 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 62 2.7E-30 T 13-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 RA13_03690 dff960d9680f0b8e0f86ce776f9d70d5 62 SUPERFAMILY SSF55331 2 61 7.2E-19 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily RA13_03690 dff960d9680f0b8e0f86ce776f9d70d5 62 Gene3D G3DSA:3.30.429.10 1 60 3.4E-26 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily RA13_03690 dff960d9680f0b8e0f86ce776f9d70d5 62 Pfam PF01361 Tautomerase enzyme 2 60 9.1E-23 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 RA13_06465 368fb699850f15b1597adb3f914de6f1 442 Pfam PF13726 Na+-H+ antiporter family 2 88 3.4E-33 T 13-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal RA13_06465 368fb699850f15b1597adb3f914de6f1 442 Pfam PF03553 Na+/H+ antiporter family 150 436 1.3E-68 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RA13_19210 3cc155d2ed5d0c7b056943e19edf522d 36 Pfam PF14152 YfhE-like protein 3 35 7.1E-9 T 13-10-2018 IPR025437 YfhE-like protein RA13_20450 6ded68afae31cb9d8f2ba223c8a64488 158 SUPERFAMILY SSF52540 26 123 6.98E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_20450 6ded68afae31cb9d8f2ba223c8a64488 158 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 132 5.4E-37 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RA13_20450 6ded68afae31cb9d8f2ba223c8a64488 158 Gene3D G3DSA:3.40.50.300 2 152 4.6E-41 T 13-10-2018 RA13_20450 6ded68afae31cb9d8f2ba223c8a64488 158 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 10 139 1.0E-48 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RA13_17595 4dfdde910d386381936b72f8df0c8b66 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 85 467 3.0E-89 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain RA13_17595 4dfdde910d386381936b72f8df0c8b66 545 Gene3D G3DSA:3.90.76.10 72 194 1.4E-172 T 13-10-2018 RA13_17595 4dfdde910d386381936b72f8df0c8b66 545 Gene3D G3DSA:3.10.105.10 300 518 1.4E-172 T 13-10-2018 RA13_17595 4dfdde910d386381936b72f8df0c8b66 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 88 110 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site RA13_17595 4dfdde910d386381936b72f8df0c8b66 545 SUPERFAMILY SSF53850 35 543 5.97E-137 T 13-10-2018 RA13_17595 4dfdde910d386381936b72f8df0c8b66 545 PIRSF PIRSF002741 1 545 5.2E-152 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RA13_17595 4dfdde910d386381936b72f8df0c8b66 545 Gene3D G3DSA:3.40.190.10 52 530 1.4E-172 T 13-10-2018 RA13_20440 33a4590908dc3bba10524a9d71bf952c 151 Pfam PF00583 Acetyltransferase (GNAT) family 15 124 4.9E-21 T 13-10-2018 IPR000182 GNAT domain RA13_20440 33a4590908dc3bba10524a9d71bf952c 151 Gene3D G3DSA:3.40.630.30 5 151 2.0E-43 T 13-10-2018 RA13_20440 33a4590908dc3bba10524a9d71bf952c 151 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 14 145 2.3E-43 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 RA13_20440 33a4590908dc3bba10524a9d71bf952c 151 SUPERFAMILY SSF55729 7 149 1.19E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_14150 b56ba2dcfee3409a0b228cb56c83ec81 618 Pfam PF05183 RNA dependent RNA polymerase 116 451 1.6E-7 T 13-10-2018 IPR007855 RNA-dependent RNA polymerase, eukaryotic-type GO:0003968 RA13_18070 6de49bd70f03463b9dcb5e20801bdd47 191 PIRSF PIRSF011560 4 190 1.3E-75 T 13-10-2018 IPR010461 Competence protein ComK GO:0030420 RA13_18070 6de49bd70f03463b9dcb5e20801bdd47 191 Pfam PF06338 ComK protein 10 158 8.1E-60 T 13-10-2018 IPR010461 Competence protein ComK GO:0030420 RA13_10145 ec4a1d81f4e11b64689e9bae81c887f9 231 TIGRFAM TIGR02830 spore_III_AG: stage III sporulation protein AG 29 226 2.6E-72 T 13-10-2018 IPR014195 Sporulation stage III, protein AG RA13_15190 7fe0e75ce59642ac58987ff9f05de741 90 Pfam PF00886 Ribosomal protein S16 9 67 3.3E-25 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15190 7fe0e75ce59642ac58987ff9f05de741 90 SUPERFAMILY SSF54565 2 86 3.14E-34 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15190 7fe0e75ce59642ac58987ff9f05de741 90 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 4.0E-35 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15190 7fe0e75ce59642ac58987ff9f05de741 90 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 24.872 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_15190 7fe0e75ce59642ac58987ff9f05de741 90 Gene3D G3DSA:3.30.1320.10 1 90 7.5E-37 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RA13_00485 ebdc8e4fa85b918c9648bfa8388e239d 418 SUPERFAMILY SSF48264 13 417 1.57E-67 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_00485 ebdc8e4fa85b918c9648bfa8388e239d 418 Pfam PF00067 Cytochrome P450 278 394 6.3E-16 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_00485 ebdc8e4fa85b918c9648bfa8388e239d 418 PRINTS PR00463 E-class P450 group I signature 319 343 9.2E-9 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_00485 ebdc8e4fa85b918c9648bfa8388e239d 418 PRINTS PR00463 E-class P450 group I signature 253 279 9.2E-9 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_00485 ebdc8e4fa85b918c9648bfa8388e239d 418 PRINTS PR00463 E-class P450 group I signature 365 388 9.2E-9 T 13-10-2018 IPR002401 Cytochrome P450, E-class, group I GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_00485 ebdc8e4fa85b918c9648bfa8388e239d 418 Gene3D G3DSA:1.10.630.10 3 418 5.7E-173 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 RA13_04370 41d2ca24ae1a246fb90b482c6a3e59bd 221 Pfam PF13614 AAA domain 47 161 1.6E-15 T 13-10-2018 IPR025669 AAA domain RA13_04370 41d2ca24ae1a246fb90b482c6a3e59bd 221 Gene3D G3DSA:3.40.50.300 2 221 9.9E-72 T 13-10-2018 RA13_04370 41d2ca24ae1a246fb90b482c6a3e59bd 221 SUPERFAMILY SSF52540 37 214 4.6E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_04370 41d2ca24ae1a246fb90b482c6a3e59bd 221 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 18 220 2.9E-68 T 13-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 RA13_21590 480854d8ceaf09275a432dfc45b91255 407 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 6 396 2.6E-99 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_21590 480854d8ceaf09275a432dfc45b91255 407 Gene3D G3DSA:3.30.300.210 247 397 4.5E-36 T 13-10-2018 IPR038501 Spore germination GerAC superfamily RA13_21590 480854d8ceaf09275a432dfc45b91255 407 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 228 394 7.5E-39 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 RA13_16625 b6cd69b9a81a0b5f3e33f0c8b39cc107 253 Pfam PF02361 Cobalt transport protein 2 222 5.2E-50 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component RA13_15050 75abfcce516b6fca25ba4ab5f22f62d1 474 Gene3D G3DSA:3.30.750.140 335 457 8.2E-10 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily RA13_15050 75abfcce516b6fca25ba4ab5f22f62d1 474 Pfam PF02120 Flagellar hook-length control protein FliK 355 429 6.7E-18 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal RA13_06445 f821566bfbc6a6d6df4763fe057f1e43 106 Pfam PF14068 Putative membrane protein 7 106 4.1E-43 T 13-10-2018 IPR025917 Putative membrane protein YuiB RA13_00035 560becdd78e96d751eae6c9d2e9e3760 401 SUPERFAMILY SSF103473 7 399 1.83E-83 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_00035 560becdd78e96d751eae6c9d2e9e3760 401 Gene3D G3DSA:1.20.1250.20 9 401 2.4E-86 T 13-10-2018 RA13_00035 560becdd78e96d751eae6c9d2e9e3760 401 ProSitePatterns PS00217 Sugar transport proteins signature 2. 108 133 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RA13_00035 560becdd78e96d751eae6c9d2e9e3760 401 Pfam PF07690 Major Facilitator Superfamily 21 266 7.2E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_03975 aa5fd02f682c6f5a1f818ca88512d620 228 Pfam PF09551 Stage II sporulation protein R (spore_II_R) 40 165 9.9E-49 T 13-10-2018 IPR014202 Sporulation stage II, protein R RA13_03975 aa5fd02f682c6f5a1f818ca88512d620 228 TIGRFAM TIGR02837 spore_II_R: stage II sporulation protein R 3 170 8.3E-72 T 13-10-2018 IPR014202 Sporulation stage II, protein R RA13_17620 d29b00d9a81343a7ba7dc500af8b62a1 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 315 5.8E-44 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_17620 d29b00d9a81343a7ba7dc500af8b62a1 316 SUPERFAMILY SSF161098 90 303 3.53E-20 T 13-10-2018 IPR035906 MetI-like superfamily RA13_17620 d29b00d9a81343a7ba7dc500af8b62a1 316 Gene3D G3DSA:1.10.3720.10 86 310 7.9E-26 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05510 f9b62701f82fbf51f48c51b2f5590968 225 SUPERFAMILY SSF102588 1 223 2.09E-44 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RA13_05510 f9b62701f82fbf51f48c51b2f5590968 225 Gene3D G3DSA:3.40.50.10320 1 224 1.5E-54 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RA13_05510 f9b62701f82fbf51f48c51b2f5590968 225 Pfam PF02585 GlcNAc-PI de-N-acetylase 4 130 2.7E-24 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 SUPERFAMILY SSF46955 3 110 1.06E-28 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 Pfam PF13411 MerR HTH family regulatory protein 3 70 1.4E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 Pfam PF07739 TipAS antibiotic-recognition domain 135 248 2.3E-31 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 SMART SM00422 3 72 1.6E-30 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 Gene3D G3DSA:1.10.1660.10 2 144 5.6E-43 T 13-10-2018 RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 SUPERFAMILY SSF89082 163 250 1.83E-27 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 Gene3D G3DSA:1.10.490.50 163 253 1.1E-26 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 6.9E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 6.9E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_04165 6a196103e7cd4cff0402c9a0e26e5981 254 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 6.9E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_06585 93665932e075c4dcb14a3b9732d230c3 368 Pfam PF01594 AI-2E family transporter 18 348 7.9E-91 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RA13_03410 fc1da4995c90aecb17d8502ac4859aec 53 Pfam PF08671 Anti-repressor SinI 9 35 7.2E-12 T 13-10-2018 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain GO:0006355|GO:0046983 RA13_03410 fc1da4995c90aecb17d8502ac4859aec 53 SUPERFAMILY SSF47406 8 36 4.71E-7 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 RA13_11865 dd5677d90a4448aeaf8077bfefd12940 151 SUPERFAMILY SSF49764 61 149 4.19E-11 T 13-10-2018 IPR008978 HSP20-like chaperone RA13_11865 dd5677d90a4448aeaf8077bfefd12940 151 Gene3D G3DSA:2.60.40.790 58 140 1.8E-7 T 13-10-2018 IPR008978 HSP20-like chaperone RA13_04810 7f443836ef172f6b9c6687e99e76a8d1 139 TIGRFAM TIGR03826 YvyF: flagellar operon protein TIGR03826 3 138 1.0E-54 T 13-10-2018 IPR022258 Flagellar operon protein YvyF RA13_18755 d85150c337a9f314d4d8eecb7cfa4949 197 SUPERFAMILY SSF63817 60 196 6.28E-33 T 13-10-2018 IPR023365 Sortase domain superfamily RA13_18755 d85150c337a9f314d4d8eecb7cfa4949 197 Gene3D G3DSA:2.40.260.10 24 197 1.7E-41 T 13-10-2018 IPR023365 Sortase domain superfamily RA13_18755 d85150c337a9f314d4d8eecb7cfa4949 197 Pfam PF04203 Sortase family 74 195 3.9E-26 T 13-10-2018 IPR005754 Sortase family RA13_18755 d85150c337a9f314d4d8eecb7cfa4949 197 TIGRFAM TIGR01076 sortase_fam: sortase 72 196 8.2E-44 T 13-10-2018 IPR005754 Sortase family RA13_03315 bc6be3aadbe810343fa4b52e53bbacb3 127 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 RA13_03315 bc6be3aadbe810343fa4b52e53bbacb3 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 124 2.3E-14 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_03315 bc6be3aadbe810343fa4b52e53bbacb3 127 SUPERFAMILY SSF54593 2 127 2.82E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_03315 bc6be3aadbe810343fa4b52e53bbacb3 127 Gene3D G3DSA:3.10.180.10 1 127 2.0E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_17345 c677c1c34dad40bd0d69b0f94a35a967 240 Pfam PF00756 Putative esterase 15 238 6.2E-58 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RA13_17345 c677c1c34dad40bd0d69b0f94a35a967 240 SUPERFAMILY SSF53474 6 237 3.16E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_17345 c677c1c34dad40bd0d69b0f94a35a967 240 Gene3D G3DSA:3.40.50.1820 2 240 1.6E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_12825 8f82133417d3a13de30c167f387f3166 72 Gene3D G3DSA:1.10.260.40 6 71 2.7E-6 T 13-10-2018 RA13_12825 8f82133417d3a13de30c167f387f3166 72 SUPERFAMILY SSF47413 4 67 2.69E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RA13_12825 8f82133417d3a13de30c167f387f3166 72 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 10 71 3.5E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RA13_06590 a4800f07bf458d713d63b0915ede7c8c 73 Pfam PF10676 Spore germination protein gerPA/gerPF 1 72 3.7E-26 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF RA13_21575 15a04f03818c01b61abebfbf2f52e622 165 Gene3D G3DSA:3.40.630.30 1 163 5.3E-24 T 13-10-2018 RA13_21575 15a04f03818c01b61abebfbf2f52e622 165 SUPERFAMILY SSF55729 6 159 1.5E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_21575 15a04f03818c01b61abebfbf2f52e622 165 Pfam PF00583 Acetyltransferase (GNAT) family 45 140 3.4E-12 T 13-10-2018 IPR000182 GNAT domain RA13_01500 0007fa1e51c60a3a1cbb31dfdd87229c 291 ProDom PD127708 YABG PROTEASE SPORULATION-SPECIFIC PEPTIDASE U57 BH0058 ORTHOLOG SPORE FAMILY B.SUBTILIS 4 283 4.0E-157 T 13-10-2018 IPR008764 Peptidase U57, YabG RA13_01500 0007fa1e51c60a3a1cbb31dfdd87229c 291 TIGRFAM TIGR02855 spore_yabG: sporulation peptidase YabG 4 287 7.3E-144 T 13-10-2018 IPR008764 Peptidase U57, YabG RA13_01500 0007fa1e51c60a3a1cbb31dfdd87229c 291 Pfam PF05582 YabG peptidase U57 4 286 5.6E-119 T 13-10-2018 IPR008764 Peptidase U57, YabG RA13_01500 0007fa1e51c60a3a1cbb31dfdd87229c 291 PIRSF PIRSF011575 2 291 5.7E-139 T 13-10-2018 IPR008764 Peptidase U57, YabG RA13_15505 76b9cd2dc24d702792a625fa28c9e851 81 Pfam PF05239 PRC-barrel domain 2 75 1.1E-14 T 13-10-2018 IPR027275 PRC-barrel domain RA13_15505 76b9cd2dc24d702792a625fa28c9e851 81 Gene3D G3DSA:2.30.30.240 1 77 9.8E-13 T 13-10-2018 RA13_15505 76b9cd2dc24d702792a625fa28c9e851 81 SUPERFAMILY SSF50346 1 74 5.76E-15 T 13-10-2018 IPR011033 PRC-barrel-like superfamily RA13_15505 76b9cd2dc24d702792a625fa28c9e851 81 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 4 75 1.0E-26 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH RA13_19925 0fdd414643cbea083973cecd7ac88fcc 91 Pfam PF14150 YesK-like protein 4 84 7.1E-24 T 13-10-2018 IPR025434 YesK-like protein RA13_09545 50bcc17576754b026c458264c097bb30 112 ProDom PD072942 YQXA ORF79 1 112 4.0E-42 T 13-10-2018 IPR020534 Uncharacterised protein family YqxA RA13_09545 50bcc17576754b026c458264c097bb30 112 Pfam PF12438 Protein of unknown function (DUF3679) 7 62 1.2E-28 T 13-10-2018 IPR020534 Uncharacterised protein family YqxA RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 13 367 3.4E-125 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 PIRSF PIRSF005962 1 383 2.1E-124 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 Gene3D G3DSA:3.40.630.10 17 367 1.0E-136 T 13-10-2018 RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 Pfam PF07687 Peptidase dimerisation domain 184 280 1.8E-12 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 Pfam PF01546 Peptidase family M20/M25/M40 72 375 1.5E-36 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 Gene3D G3DSA:3.30.70.360 181 293 1.0E-136 T 13-10-2018 RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 SUPERFAMILY SSF55031 182 295 8.9E-31 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RA13_21555 0df041aa3d8fb45b4693298d63d912b5 383 SUPERFAMILY SSF53187 4 379 2.38E-84 T 13-10-2018 RA13_21705 685bd3e71b8393ae7b6087ae0be45d27 121 Gene3D G3DSA:1.10.10.10 2 117 5.8E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RA13_21705 685bd3e71b8393ae7b6087ae0be45d27 121 Pfam PF01638 HxlR-like helix-turn-helix 19 107 1.5E-39 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type RA13_21705 685bd3e71b8393ae7b6087ae0be45d27 121 SUPERFAMILY SSF46785 2 106 2.53E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RA13_08660 a05da6d3c095414d9dab918032301bc4 263 Gene3D G3DSA:3.40.50.10090 1 135 9.0E-23 T 13-10-2018 RA13_08660 a05da6d3c095414d9dab918032301bc4 263 Gene3D G3DSA:3.40.50.10090 152 260 5.7E-19 T 13-10-2018 RA13_08660 a05da6d3c095414d9dab918032301bc4 263 Pfam PF02602 Uroporphyrinogen-III synthase HemD 25 250 7.8E-49 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_08660 a05da6d3c095414d9dab918032301bc4 263 SUPERFAMILY SSF69618 10 257 8.37E-57 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RA13_16315 8c8ede6607daf89b38ff53dd4d1b92af 279 Pfam PF01740 STAS domain 167 268 4.0E-12 T 13-10-2018 IPR002645 STAS domain RA13_16315 8c8ede6607daf89b38ff53dd4d1b92af 279 Gene3D G3DSA:3.30.750.24 159 276 7.9E-33 T 13-10-2018 IPR036513 STAS domain superfamily RA13_16315 8c8ede6607daf89b38ff53dd4d1b92af 279 SUPERFAMILY SSF52091 165 272 9.61E-17 T 13-10-2018 IPR036513 STAS domain superfamily RA13_17155 141eec9eaafe2565f08dc2b1138c57ff 250 Pfam PF03649 Uncharacterised protein family (UPF0014) 4 240 1.1E-72 T 13-10-2018 IPR005226 UPF0014 family RA13_17155 141eec9eaafe2565f08dc2b1138c57ff 250 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 1 246 1.7E-104 T 13-10-2018 IPR005226 UPF0014 family RA13_10165 69ca920abb5ead4a810986d5f1d9eff5 135 Pfam PF03780 Asp23 family, cell envelope-related function 16 121 2.9E-35 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 RA13_08730 6ea4b646e73cabe637742828c45ddb5a 172 Pfam PF04093 rod shape-determining protein MreD 2 164 7.3E-41 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RA13_08730 6ea4b646e73cabe637742828c45ddb5a 172 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 7 159 9.4E-27 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RA13_08365 86138619c23c47aad789053a9d28af4b 598 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 416 537 7.4E-29 T 13-10-2018 IPR025299 CstA, C-terminal domain RA13_08365 86138619c23c47aad789053a9d28af4b 598 Pfam PF02554 Carbon starvation protein CstA 1 366 7.5E-147 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 RA13_07045 ca93504b0eea6beede8f999d4124de5f 179 Gene3D G3DSA:2.60.40.3490 41 170 4.4E-57 T 13-10-2018 IPR038480 YuaB-like superfamily RA13_07045 ca93504b0eea6beede8f999d4124de5f 179 ProDom PD034110 YWEA MEMBRANE YUAB TRANSMEMBRANE ORF-1 45 168 7.0E-56 T 13-10-2018 IPR034650 YuaB-like RA13_18675 a64257dc374dc8ad6b84b4bb5171fb6d 80 Pfam PF14148 YhdB-like protein 2 70 3.7E-40 T 13-10-2018 IPR025431 YhdB-like protein RA13_08700 e90d8323c64f0cfc6bb9cc590e6f1d14 248 Pfam PF01478 Type IV leader peptidase family 101 203 7.6E-17 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RA13_08700 e90d8323c64f0cfc6bb9cc590e6f1d14 248 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 7 90 6.4E-26 T 13-10-2018 IPR010627 Peptidase A24A, N-terminal RA13_17470 126e3637dcf297042d103844a9f77598 235 Pfam PF03070 TENA/THI-4/PQQC family 9 214 9.2E-65 T 13-10-2018 IPR004305 Thiaminase-2/PQQC RA13_17470 126e3637dcf297042d103844a9f77598 235 SUPERFAMILY SSF48613 2 226 4.3E-73 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RA13_17470 126e3637dcf297042d103844a9f77598 235 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 11 215 6.6E-92 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 RA13_17470 126e3637dcf297042d103844a9f77598 235 Gene3D G3DSA:1.20.910.10 1 220 3.8E-67 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RA13_17545 ea8d0b8cdadd3a26bddbe80945d327bb 218 Gene3D G3DSA:3.30.70.1950 121 218 6.0E-35 T 13-10-2018 IPR038471 MecA, C-terminal domain superfamily RA13_17545 ea8d0b8cdadd3a26bddbe80945d327bb 218 PIRSF PIRSF029008 1 218 1.3E-76 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA RA13_17545 ea8d0b8cdadd3a26bddbe80945d327bb 218 Pfam PF05389 Negative regulator of genetic competence (MecA) 1 212 4.6E-54 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA RA13_17545 ea8d0b8cdadd3a26bddbe80945d327bb 218 Hamap MF_01124 Adapter protein MecA [mecA]. 1 216 27.9 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA RA13_09850 1ac63c4cf0c6540a51817f17b3c19436 154 Gene3D G3DSA:1.10.8.1150 86 154 3.5E-14 T 13-10-2018 RA13_09850 1ac63c4cf0c6540a51817f17b3c19436 154 Pfam PF02618 YceG-like family 93 153 5.7E-8 T 13-10-2018 IPR003770 Endolytic murein transglycosylase RA13_19810 d91d7f1321ad3da4f6e9857e9a418c5a 107 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 78 1.5E-16 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RA13_19810 d91d7f1321ad3da4f6e9857e9a418c5a 107 SUPERFAMILY SSF54909 1 99 3.84E-24 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_19810 d91d7f1321ad3da4f6e9857e9a418c5a 107 Gene3D G3DSA:3.30.70.100 1 107 6.7E-42 T 13-10-2018 RA13_13350 25ad777054fe2b2bcaf0258372a69666 600 Pfam PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH 514 595 6.3E-30 T 13-10-2018 IPR026834 LHH RA13_13350 25ad777054fe2b2bcaf0258372a69666 600 Pfam PF04740 LXG domain of WXG superfamily 2 201 2.3E-49 T 13-10-2018 IPR006829 LXG domain RA13_12005 b647e6c03cc54782d2794f20827241ab 124 Pfam PF01844 HNH endonuclease 62 109 1.2E-7 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RA13_12005 b647e6c03cc54782d2794f20827241ab 124 SMART SM00507 50 105 2.7E-8 T 13-10-2018 IPR003615 HNH nuclease RA13_17590 6c32095a24392ed7fd4c3f85d3b634d7 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 1.2E-41 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_17590 6c32095a24392ed7fd4c3f85d3b634d7 311 SUPERFAMILY SSF161098 88 291 1.42E-19 T 13-10-2018 IPR035906 MetI-like superfamily RA13_17590 6c32095a24392ed7fd4c3f85d3b634d7 311 Gene3D G3DSA:1.10.3720.10 84 300 6.1E-21 T 13-10-2018 IPR035906 MetI-like superfamily RA13_00215 adcf0012d8f1980776ab0bf01a175406 232 Pfam PF12730 ABC-2 family transporter protein 20 188 3.4E-6 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RA13_20770 20dac281bbde1bb1d0eff7c825b63278 172 Gene3D G3DSA:3.40.630.30 1 171 1.8E-47 T 13-10-2018 RA13_20770 20dac281bbde1bb1d0eff7c825b63278 172 SUPERFAMILY SSF55729 1 162 9.43E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_20770 20dac281bbde1bb1d0eff7c825b63278 172 Pfam PF00583 Acetyltransferase (GNAT) family 33 147 1.3E-18 T 13-10-2018 IPR000182 GNAT domain RA13_01405 3e5b78355d84487f9cd9f1dcfc80e522 125 Pfam PF04977 Septum formation initiator 46 122 3.3E-17 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC RA13_15725 a8c2e67a72a108643f61a04a8459ede9 133 Pfam PF08868 YugN-like family 19 103 1.1E-13 T 13-10-2018 IPR014967 Uncharacterised protein family, YugN-like RA13_15725 a8c2e67a72a108643f61a04a8459ede9 133 SUPERFAMILY SSF160755 16 128 4.18E-40 T 13-10-2018 IPR036491 YugN-like superfamily RA13_15725 a8c2e67a72a108643f61a04a8459ede9 133 Gene3D G3DSA:3.30.310.100 13 133 4.1E-46 T 13-10-2018 IPR036491 YugN-like superfamily RA13_19350 2de082e7212f91d8cdbf7d41bfb474e0 185 Pfam PF17353 Family of unknown function (DUF5381) 5 172 2.6E-68 T 13-10-2018 IPR035324 Protein of unknown function DUF5381 RA13_19350 2de082e7212f91d8cdbf7d41bfb474e0 185 ProDom PD033957 LIPOPROTEIN MEMBRANE TRANSMEMBRANE YFJD PALMITATE YFJE PRECURSOR SIGNAL 38 185 4.0E-65 T 13-10-2018 IPR035324 Protein of unknown function DUF5381 RA13_12495 37ea685cbe0560390f684e0983473e29 76 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 2 50 1.1E-12 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 RA13_12495 37ea685cbe0560390f684e0983473e29 76 Pfam PF12728 Helix-turn-helix domain 2 50 1.9E-7 T 13-10-2018 RA13_11510 40bf55286a94b4f4dd4fc190490a2311 207 Pfam PF01966 HD domain 30 130 2.7E-7 T 13-10-2018 IPR006674 HD domain RA13_11510 40bf55286a94b4f4dd4fc190490a2311 207 Gene3D G3DSA:1.20.58.1910 103 207 1.7E-39 T 13-10-2018 RA13_11510 40bf55286a94b4f4dd4fc190490a2311 207 Gene3D G3DSA:1.10.472.50 1 102 2.0E-31 T 13-10-2018 RA13_11510 40bf55286a94b4f4dd4fc190490a2311 207 SUPERFAMILY SSF109604 7 200 4.97E-56 T 13-10-2018 RA13_11510 40bf55286a94b4f4dd4fc190490a2311 207 SMART SM00471 24 140 4.0E-9 T 13-10-2018 IPR003607 HD/PDEase domain RA13_21835 fd54b63f62fabfc3f58b02cb38921df2 284 Pfam PF09323 Domain of unknown function (DUF1980) 1 189 1.0E-60 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 RA13_21835 fd54b63f62fabfc3f58b02cb38921df2 284 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 20 279 3.7E-60 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 RA13_07095 d853a41a8f8eeca541c2a13a7ab5936d 194 TIGRFAM TIGR01076 sortase_fam: sortase 69 186 2.5E-32 T 13-10-2018 IPR005754 Sortase family RA13_07095 d853a41a8f8eeca541c2a13a7ab5936d 194 Gene3D G3DSA:2.40.260.10 15 194 1.6E-44 T 13-10-2018 IPR023365 Sortase domain superfamily RA13_07095 d853a41a8f8eeca541c2a13a7ab5936d 194 Pfam PF04203 Sortase family 72 191 7.6E-29 T 13-10-2018 IPR005754 Sortase family RA13_07095 d853a41a8f8eeca541c2a13a7ab5936d 194 SUPERFAMILY SSF63817 59 193 6.15E-37 T 13-10-2018 IPR023365 Sortase domain superfamily RA13_10230 9335ee5c0af19a8422afba34b34158d2 372 Gene3D G3DSA:3.20.20.70 3 368 7.4E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_10230 9335ee5c0af19a8422afba34b34158d2 372 SUPERFAMILY SSF51395 5 338 1.95E-93 T 13-10-2018 RA13_10230 9335ee5c0af19a8422afba34b34158d2 372 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 337 4.9E-110 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RA13_10790 aa275ecd03e7fbca5dec4431186d500d 154 Gene3D G3DSA:3.40.50.960 1 154 2.0E-67 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10790 aa275ecd03e7fbca5dec4431186d500d 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 30.392 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10790 aa275ecd03e7fbca5dec4431186d500d 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 12 150 4.9E-60 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10790 aa275ecd03e7fbca5dec4431186d500d 154 SUPERFAMILY SSF52121 3 153 1.96E-63 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_10790 aa275ecd03e7fbca5dec4431186d500d 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 13 149 4.3E-61 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RA13_03895 97132ff9ec1d9149f653212185d3e8cf 124 Gene3D G3DSA:3.40.50.2300 1 124 1.8E-44 T 13-10-2018 RA13_03895 97132ff9ec1d9149f653212185d3e8cf 124 SUPERFAMILY SSF52172 4 120 3.98E-36 T 13-10-2018 IPR011006 CheY-like superfamily RA13_03895 97132ff9ec1d9149f653212185d3e8cf 124 SMART SM00448 4 115 7.7E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_03895 97132ff9ec1d9149f653212185d3e8cf 124 Pfam PF00072 Response regulator receiver domain 6 116 5.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RA13_12070 67aa4b9afa7f8bfc0bba86de73e1c2db 126 Pfam PF11367 Protein of unknown function (DUF3168) 9 116 1.4E-8 T 13-10-2018 IPR021508 Tail completion protein RA13_09230 ff8e50f8279a63edbe46a75b7be943bc 208 SUPERFAMILY SSF53098 1 167 6.84E-37 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily RA13_09230 ff8e50f8279a63edbe46a75b7be943bc 208 Gene3D G3DSA:3.30.420.10 1 169 2.1E-35 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RA13_09230 ff8e50f8279a63edbe46a75b7be943bc 208 SMART SM00479 2 166 1.5E-17 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RA13_09230 ff8e50f8279a63edbe46a75b7be943bc 208 Pfam PF00929 Exonuclease 4 157 8.2E-18 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RA13_00665 f984cb285f6c31fdf5043ef4e8b3058b 273 SUPERFAMILY SSF143597 40 240 9.42E-71 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily RA13_00665 f984cb285f6c31fdf5043ef4e8b3058b 273 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 118 235 6.4E-44 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal RA13_00665 f984cb285f6c31fdf5043ef4e8b3058b 273 Hamap MF_01499 Diadenylate cyclase [dacA]. 1 254 34.564 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 RA13_00665 f984cb285f6c31fdf5043ef4e8b3058b 273 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 3 256 3.6E-112 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 RA13_00665 f984cb285f6c31fdf5043ef4e8b3058b 273 Gene3D G3DSA:3.40.1700.10 101 254 1.0E-63 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily RA13_00665 f984cb285f6c31fdf5043ef4e8b3058b 273 PIRSF PIRSF004793 2 269 1.3E-97 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 RA13_14940 7d28e68ab79b0aa6e7e7e2bc2cf6c1a7 168 ProDom PD177368 TRANSCRIPTION DNA-BINDING MOTILITY SWRB SWARMING YLXL REGULATION BH2428 1 165 3.0E-41 T 13-10-2018 RA13_05505 08dc512e1f8c1519464aedb4c9907e0f 251 Pfam PF08889 WbqC-like protein family 16 230 1.3E-74 T 13-10-2018 IPR014985 WbqC-like protein family RA13_03950 9983174ec7c8b7a6d65d89108ae6287b 127 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 124 9.6E-20 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_03950 9983174ec7c8b7a6d65d89108ae6287b 127 Gene3D G3DSA:3.10.180.10 7 126 1.7E-33 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_03950 9983174ec7c8b7a6d65d89108ae6287b 127 SUPERFAMILY SSF54593 4 126 3.49E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_03570 ba09706be5e5168d8cd78d54401ba478 123 Pfam PF04241 Protein of unknown function (DUF423) 18 105 6.5E-32 T 13-10-2018 IPR006696 Protein of unknown function DUF423 RA13_02020 e7288546caceb68a8344abc62af47d8f 244 SUPERFAMILY SSF46955 3 105 4.76E-23 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_02020 e7288546caceb68a8344abc62af47d8f 244 Pfam PF13411 MerR HTH family regulatory protein 4 71 1.0E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_02020 e7288546caceb68a8344abc62af47d8f 244 SUPERFAMILY SSF89082 161 237 4.05E-6 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain RA13_02020 e7288546caceb68a8344abc62af47d8f 244 SMART SM00422 3 72 1.3E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_02020 e7288546caceb68a8344abc62af47d8f 244 Pfam PF07739 TipAS antibiotic-recognition domain 146 237 2.1E-10 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain RA13_02020 e7288546caceb68a8344abc62af47d8f 244 Gene3D G3DSA:1.10.1660.10 2 138 7.8E-33 T 13-10-2018 RA13_06560 0c41f2eea5ed1c73312629e719edebcd 1062 Gene3D G3DSA:1.20.5.340 536 631 3.9E-5 T 13-10-2018 RA13_06560 0c41f2eea5ed1c73312629e719edebcd 1062 TIGRFAM TIGR03929 T7_esaA_Nterm: type VII secretion protein EsaA 11 208 5.8E-71 T 13-10-2018 IPR023838 Type VII secretion system EsaA GO:0016021 RA13_21435 62943bfea664614d88f12636c5ac8bd0 287 Pfam PF06800 Sugar transport protein 4 282 1.4E-111 T 13-10-2018 IPR010651 Sugar transport protein GO:0015144|GO:0016021|GO:0034219 RA13_21435 62943bfea664614d88f12636c5ac8bd0 287 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 1 284 4.8E-117 T 13-10-2018 RA13_21435 62943bfea664614d88f12636c5ac8bd0 287 SUPERFAMILY SSF103481 37 138 9.81E-9 T 13-10-2018 RA13_02540 ddd55dbb08af6e56053be5f14c38e64e 170 Pfam PF04982 HPP family 50 166 4.7E-41 T 13-10-2018 IPR007065 HPP RA13_11140 bab90c75016156353c1228188008ec44 148 Pfam PF10673 Protein of unknown function (DUF2487) 9 145 5.4E-44 T 13-10-2018 IPR019615 Protein of unknown function DUF2487 RA13_21385 a0ec2ed18db10d04d520a90631116d96 131 Gene3D G3DSA:3.10.129.10 3 130 1.7E-29 T 13-10-2018 RA13_21385 a0ec2ed18db10d04d520a90631116d96 131 Pfam PF07977 FabA-like domain 6 123 2.5E-12 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RA13_21385 a0ec2ed18db10d04d520a90631116d96 131 SUPERFAMILY SSF54637 4 128 9.22E-28 T 13-10-2018 IPR029069 HotDog domain superfamily RA13_14745 feebd26692dcb3c45a28ac91a9f86411 426 SUPERFAMILY SSF63411 243 414 1.31E-30 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RA13_14745 feebd26692dcb3c45a28ac91a9f86411 426 SUPERFAMILY SSF63411 12 232 5.74E-26 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RA13_14745 feebd26692dcb3c45a28ac91a9f86411 426 Pfam PF05193 Peptidase M16 inactive domain 185 357 5.1E-28 T 13-10-2018 IPR007863 Peptidase M16, C-terminal RA13_14745 feebd26692dcb3c45a28ac91a9f86411 426 Gene3D G3DSA:3.30.830.10 7 232 1.1E-62 T 13-10-2018 RA13_14745 feebd26692dcb3c45a28ac91a9f86411 426 Gene3D G3DSA:3.30.830.10 241 425 8.4E-43 T 13-10-2018 RA13_00320 e126908dc33efacd74f163209eae93f5 91 Pfam PF07853 Protein of unknown function (DUF1648) 13 59 9.4E-11 T 13-10-2018 IPR012867 Domain of unknown function DUF1648 RA13_03120 4920d868506249d15e45e83b0c214cb8 338 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 4 326 2.5E-101 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RA13_03120 4920d868506249d15e45e83b0c214cb8 338 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 226 7.8E-109 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RA13_03120 4920d868506249d15e45e83b0c214cb8 338 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 228 336 2.3E-39 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RA13_03120 4920d868506249d15e45e83b0c214cb8 338 PIRSF PIRSF000267 1 338 8.8E-112 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RA13_17200 c95aa237f4030266ba6ef897f109ef19 197 Gene3D G3DSA:2.60.40.1240 56 196 2.2E-33 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily RA13_17200 c95aa237f4030266ba6ef897f109ef19 197 Pfam PF11611 Domain of unknown function (DUF4352) 57 182 3.1E-26 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 RA13_00220 5ce138978ccfb22c588df327552d9d82 230 Pfam PF12730 ABC-2 family transporter protein 6 187 3.8E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RA13_13765 2a19a4af65f5aea094aa2105a36b148a 246 SUPERFAMILY SSF50685 178 234 8.72E-6 T 13-10-2018 IPR036908 RlpA-like domain superfamily RA13_13765 2a19a4af65f5aea094aa2105a36b148a 246 Pfam PF06725 3D domain 179 242 2.3E-11 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 RA13_19600 b786068fe6689ea00836825287f3f276 432 Pfam PF03600 Citrate transporter 13 377 3.3E-44 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RA13_19600 b786068fe6689ea00836825287f3f276 432 TIGRFAM TIGR00784 citMHS: citrate transporter 1 431 5.9E-233 T 13-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 RA13_03015 278d1d46f1084b09aab6b298af465128 481 Pfam PF02447 GntP family permease 65 476 8.9E-6 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RA13_09440 4a4b4bcbad93e5568909318606ec22fd 152 SUPERFAMILY SSF118196 1 151 1.57E-40 T 13-10-2018 IPR036413 YaeB-like superfamily RA13_09440 4a4b4bcbad93e5568909318606ec22fd 152 Gene3D G3DSA:2.40.30.70 1 132 8.3E-29 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily RA13_09440 4a4b4bcbad93e5568909318606ec22fd 152 Pfam PF01980 Uncharacterised protein family UPF0066 26 130 3.5E-27 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain RA13_00850 43b71d30f6aa375aa26318110caf71c5 147 Pfam PF10730 Protein of unknown function (DUF2521) 1 147 4.7E-57 T 13-10-2018 IPR019667 Uncharacterised protein family YbaK RA13_14475 5e5d2a1db0db3c17619b23fae2512dfe 328 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 5 322 1.5E-146 T 13-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RA13_14475 5e5d2a1db0db3c17619b23fae2512dfe 328 PIRSF PIRSF000355 1 319 1.0E-95 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14475 5e5d2a1db0db3c17619b23fae2512dfe 328 Pfam PF00268 Ribonucleotide reductase, small chain 8 284 1.2E-81 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14475 5e5d2a1db0db3c17619b23fae2512dfe 328 Gene3D G3DSA:1.10.620.20 3 293 1.9E-114 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RA13_14475 5e5d2a1db0db3c17619b23fae2512dfe 328 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 96 113 - T 13-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RA13_14475 5e5d2a1db0db3c17619b23fae2512dfe 328 SUPERFAMILY SSF47240 4 322 1.55E-92 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_15735 b9d24e4dfe5eefa841f388d69aee0b9f 110 TIGRFAM TIGR02908 CoxD_Bacillus: cytochrome c oxidase, subunit IVB 1 110 6.8E-57 T 13-10-2018 IPR014257 Cytochrome c oxidase, subunit IV bacillaceae KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RA13_15735 b9d24e4dfe5eefa841f388d69aee0b9f 110 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 30 101 2.2E-14 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 RA13_05110 b709a8f361ebd2e246b0650526c8c4d0 471 SUPERFAMILY SSF54001 337 468 1.08E-29 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_05110 b709a8f361ebd2e246b0650526c8c4d0 471 Pfam PF00877 NlpC/P60 family 355 465 9.8E-30 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RA13_05110 b709a8f361ebd2e246b0650526c8c4d0 471 Gene3D G3DSA:3.90.1720.10 342 471 8.7E-32 T 13-10-2018 RA13_11310 7d1d91ab2d1ab03a5e89f2e865a577c5 129 Pfam PF14179 YppG-like protein 20 127 1.4E-25 T 13-10-2018 IPR025555 YppG-like protein RA13_17250 035030e142fc09a346dc74cccb8932e6 220 Pfam PF02308 MgtC family 9 136 6.3E-38 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_17250 035030e142fc09a346dc74cccb8932e6 220 PRINTS PR01837 MgtC/SapB protein signature 31 49 1.2E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_17250 035030e142fc09a346dc74cccb8932e6 220 PRINTS PR01837 MgtC/SapB protein signature 92 116 1.2E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_17250 035030e142fc09a346dc74cccb8932e6 220 PRINTS PR01837 MgtC/SapB protein signature 65 87 1.2E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_17250 035030e142fc09a346dc74cccb8932e6 220 PRINTS PR01837 MgtC/SapB protein signature 12 31 1.2E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RA13_12980 301934dfbc8c28019eccfbbc0c2e239e 411 SUPERFAMILY SSF103473 11 398 4.71E-44 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_12980 301934dfbc8c28019eccfbbc0c2e239e 411 Gene3D G3DSA:1.20.1250.20 8 389 1.5E-38 T 13-10-2018 RA13_12980 301934dfbc8c28019eccfbbc0c2e239e 411 Pfam PF07690 Major Facilitator Superfamily 14 302 2.4E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_14540 d7c8436550a20214ec17d31e472f5087 235 Gene3D G3DSA:3.40.630.100 31 235 5.3E-61 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily RA13_14540 d7c8436550a20214ec17d31e472f5087 235 Pfam PF05908 Poly-gamma-glutamate hydrolase 36 224 2.5E-71 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase RA13_09805 3c320cdfec28f8a328df2267f0dab279 160 Pfam PF04306 Protein of unknown function (DUF456) 21 158 9.9E-39 T 13-10-2018 IPR007403 Protein of unknown function DUF456 RA13_08345 82853aa0af64748e00d58b4fc91f55fc 433 SUPERFAMILY SSF53850 32 431 3.2E-61 T 13-10-2018 RA13_08345 82853aa0af64748e00d58b4fc91f55fc 433 Gene3D G3DSA:3.40.190.10 149 415 1.0E-66 T 13-10-2018 RA13_08345 82853aa0af64748e00d58b4fc91f55fc 433 Pfam PF01547 Bacterial extracellular solute-binding protein 46 335 2.1E-39 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein RA13_08345 82853aa0af64748e00d58b4fc91f55fc 433 Gene3D G3DSA:3.40.190.10 53 360 1.0E-66 T 13-10-2018 RA13_13490 7e8071029e2b5f7de802ece688da2068 135 SMART SM00422 12 80 4.2E-29 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_13490 7e8071029e2b5f7de802ece688da2068 135 Gene3D G3DSA:1.10.1660.10 1 84 7.4E-27 T 13-10-2018 RA13_13490 7e8071029e2b5f7de802ece688da2068 135 Pfam PF13411 MerR HTH family regulatory protein 13 78 9.6E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_13490 7e8071029e2b5f7de802ece688da2068 135 ProSitePatterns PS00552 MerR-type HTH domain signature. 15 37 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RA13_13490 7e8071029e2b5f7de802ece688da2068 135 SUPERFAMILY SSF46955 12 90 1.6E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily RA13_08120 c21f848c525a80b977e2ffdbe4faf9f2 154 Pfam PF04284 Protein of unknown function (DUF441) 7 146 6.4E-48 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame RA13_08120 c21f848c525a80b977e2ffdbe4faf9f2 154 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 3 149 19.294 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame RA13_08120 c21f848c525a80b977e2ffdbe4faf9f2 154 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 21 131 7.0E-36 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame RA13_11660 9917c23e2cec8be05e26132ae080ffbe 205 SUPERFAMILY SSF81296 28 204 4.62E-53 T 13-10-2018 IPR014756 Immunoglobulin E-set RA13_11660 9917c23e2cec8be05e26132ae080ffbe 205 Gene3D G3DSA:2.70.50.50 28 205 1.9E-77 T 13-10-2018 RA13_11660 9917c23e2cec8be05e26132ae080ffbe 205 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 28 202 8.9E-38 T 13-10-2018 IPR004302 Cellulose/chitin-binding protein, N-terminal RA13_01060 703deab850f725c289345e702799d031 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 7.1E-10 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RA13_01060 703deab850f725c289345e702799d031 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 38 46 7.1E-10 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RA13_01060 703deab850f725c289345e702799d031 321 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 114 128 7.1E-10 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 RA13_01060 703deab850f725c289345e702799d031 321 Gene3D G3DSA:3.40.50.1820 15 316 3.6E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_01060 703deab850f725c289345e702799d031 321 Pfam PF00561 alpha/beta hydrolase fold 36 139 1.1E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RA13_01060 703deab850f725c289345e702799d031 321 SUPERFAMILY SSF53474 28 313 4.09E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_16150 af75f8eac6543f8e0b4bffcbf908fc07 302 SUPERFAMILY SSF47240 1 293 1.35E-96 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_16150 af75f8eac6543f8e0b4bffcbf908fc07 302 Gene3D G3DSA:1.20.1260.130 2 297 8.1E-113 T 13-10-2018 RA13_16150 af75f8eac6543f8e0b4bffcbf908fc07 302 Pfam PF05067 Manganese containing catalase 4 295 7.1E-98 T 13-10-2018 IPR007760 Manganese catalase RA13_11810 1dad878176937ce96f438f33c62640ce 233 Pfam PF13649 Methyltransferase domain 39 130 2.3E-18 T 13-10-2018 RA13_11810 1dad878176937ce96f438f33c62640ce 233 SUPERFAMILY SSF53335 16 189 1.23E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_11810 1dad878176937ce96f438f33c62640ce 233 Gene3D G3DSA:3.40.50.150 9 233 1.2E-36 T 13-10-2018 RA13_11710 a86b5cb050964e6d1761488fd2d6016d 428 Pfam PF00535 Glycosyl transferase family 2 8 168 3.7E-24 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RA13_11710 a86b5cb050964e6d1761488fd2d6016d 428 Gene3D G3DSA:3.90.550.10 6 240 5.3E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_11710 a86b5cb050964e6d1761488fd2d6016d 428 SUPERFAMILY SSF53448 6 222 3.05E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_05790 67289bb119749ba2fac6dfc262c02275 336 Gene3D G3DSA:1.10.3470.10 4 336 3.8E-101 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_05790 67289bb119749ba2fac6dfc262c02275 336 Pfam PF01032 FecCD transport family 18 334 2.1E-96 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_05790 67289bb119749ba2fac6dfc262c02275 336 SUPERFAMILY SSF81345 5 334 4.32E-86 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_17325 c7cf7026dcec8ddda12d0615e976fb70 396 Pfam PF05684 Protein of unknown function (DUF819) 15 395 1.6E-126 T 13-10-2018 IPR008537 Protein of unknown function DUF819 RA13_18820 e404d95a5ca40fb33d8760525d540ac6 305 Pfam PF00005 ABC transporter 21 161 4.5E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RA13_18820 e404d95a5ca40fb33d8760525d540ac6 305 SUPERFAMILY SSF52540 3 230 5.43E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_18820 e404d95a5ca40fb33d8760525d540ac6 305 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RA13_18820 e404d95a5ca40fb33d8760525d540ac6 305 Gene3D G3DSA:3.40.50.300 1 238 4.1E-60 T 13-10-2018 RA13_18820 e404d95a5ca40fb33d8760525d540ac6 305 SMART SM00382 29 209 1.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain RA13_21265 133bfb73aa95ddcb4ac611a175dd059f 159 Pfam PF14093 Domain of unknown function (DUF4271) 29 153 2.9E-7 T 13-10-2018 IPR025367 Protein of unknown function DUF4271 RA13_00025 53bdf140330e00a851a7476a483f1362 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 265 7.3E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_00025 53bdf140330e00a851a7476a483f1362 282 Gene3D G3DSA:1.10.3720.10 84 275 2.6E-34 T 13-10-2018 IPR035906 MetI-like superfamily RA13_00025 53bdf140330e00a851a7476a483f1362 282 SUPERFAMILY SSF161098 86 269 3.01E-38 T 13-10-2018 IPR035906 MetI-like superfamily RA13_02505 b481202152cf46d2345f5fa578d3f984 152 Pfam PF06271 RDD family 4 145 2.8E-26 T 13-10-2018 IPR010432 RDD RA13_05020 d4009ed98c6ae59fa0189d6c2ba30628 312 Pfam PF07670 Nucleoside recognition 175 263 1.0E-7 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RA13_05020 d4009ed98c6ae59fa0189d6c2ba30628 312 Pfam PF07670 Nucleoside recognition 17 101 3.3E-9 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RA13_03465 c8dfc35cb1e3b89a90931eb30082350c 385 Gene3D G3DSA:3.40.630.30 13 281 2.9E-122 T 13-10-2018 RA13_03465 c8dfc35cb1e3b89a90931eb30082350c 385 Gene3D G3DSA:3.40.630.30 129 385 2.9E-122 T 13-10-2018 RA13_03465 c8dfc35cb1e3b89a90931eb30082350c 385 Pfam PF13530 Sterol carrier protein domain 176 381 3.9E-48 T 13-10-2018 IPR025559 Enhanced intracellular survival protein domain RA13_03465 c8dfc35cb1e3b89a90931eb30082350c 385 SUPERFAMILY SSF55718 282 385 7.85E-19 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RA13_03465 c8dfc35cb1e3b89a90931eb30082350c 385 Gene3D G3DSA:3.30.1050.10 282 375 2.9E-122 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RA13_03465 c8dfc35cb1e3b89a90931eb30082350c 385 Pfam PF13527 Acetyltransferase (GNAT) domain 9 128 7.8E-33 T 13-10-2018 RA13_03465 c8dfc35cb1e3b89a90931eb30082350c 385 SUPERFAMILY SSF55729 6 281 4.94E-64 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_11900 7868527c26a42cc78effbb07e425361a 154 Pfam PF06114 IrrE N-terminal-like domain 14 122 4.2E-8 T 13-10-2018 IPR010359 IrrE N-terminal-like domain RA13_11580 9844d479d2731ba17f76d4a49afdc3b8 193 Gene3D G3DSA:3.40.30.10 20 193 1.1E-60 T 13-10-2018 RA13_11580 9844d479d2731ba17f76d4a49afdc3b8 193 Pfam PF02630 SCO1/SenC 4 173 1.1E-60 T 13-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_11580 9844d479d2731ba17f76d4a49afdc3b8 193 SUPERFAMILY SSF52833 28 189 1.85E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 SUPERFAMILY SSF50974 9 300 1.31E-73 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 133 175 5.1E-12 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 260 299 9.4E-14 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 218 257 9.4E-12 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 91 129 2.9E-12 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 13 48 1.2E-7 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 176 217 1.6E-11 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 49 90 1.8E-10 T 13-10-2018 IPR011964 YVTN beta-propeller repeat RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 Gene3D G3DSA:2.130.10.10 207 301 1.6E-28 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 Gene3D G3DSA:2.130.10.10 8 98 5.3E-27 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 Pfam PF10282 Lactonase, 7-bladed beta-propeller 10 111 2.6E-10 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 Pfam PF10282 Lactonase, 7-bladed beta-propeller 127 199 2.5E-5 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RA13_04930 25021105ea791cbd7feef5a2d1d9f37d 302 Gene3D G3DSA:2.130.10.10 99 206 1.1E-31 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RA13_05620 5ffdb622d87e5427c5c4d365ab89a349 76 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.5E-13 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RA13_05620 5ffdb622d87e5427c5c4d365ab89a349 76 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 1.5E-13 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RA13_05620 5ffdb622d87e5427c5c4d365ab89a349 76 PRINTS PR01651 Protein-export SecG membrane protein signature 56 76 1.5E-13 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RA13_05620 5ffdb622d87e5427c5c4d365ab89a349 76 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 75 2.7E-23 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RA13_05620 5ffdb622d87e5427c5c4d365ab89a349 76 Pfam PF03840 Preprotein translocase SecG subunit 4 75 5.6E-23 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RA13_20415 140213d1de24da01c17fbc55bdd4eb56 57 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 56 16.496 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RA13_20415 140213d1de24da01c17fbc55bdd4eb56 57 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 1.8E-18 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RA13_20415 140213d1de24da01c17fbc55bdd4eb56 57 Pfam PF02416 mttA/Hcf106 family 3 55 1.4E-23 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 Gene3D G3DSA:1.20.210.10 3 530 7.2E-205 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 245 299 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 26 469 2.5E-145 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 366 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 289 304 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 376 395 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 17 42 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 64 87 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 163 181 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 192 211 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 426 447 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 91 115 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 133 145 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 243 264 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 PRINTS PR01165 Cytochrome c oxidase subunit I signature 313 334 1.7E-103 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 18 521 1.7E-206 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 RA13_15745 5ffc0ec72a00c085f87eb1faca4249dc 622 SUPERFAMILY SSF81442 14 523 3.27E-177 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_04590 17169e55f93c4216fcd9bd83c923a13b 149 Pfam PF14102 Capsule biosynthesis CapC 12 128 2.7E-39 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 RA13_04590 17169e55f93c4216fcd9bd83c923a13b 149 TIGRFAM TIGR04011 poly_gGlu_PgsC: poly-gamma-glutamate biosynthesis protein PgsC 10 139 1.4E-44 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 RA13_04590 17169e55f93c4216fcd9bd83c923a13b 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 20 37 1.6E-50 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 RA13_04590 17169e55f93c4216fcd9bd83c923a13b 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 66 80 1.6E-50 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 RA13_04590 17169e55f93c4216fcd9bd83c923a13b 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 118 132 1.6E-50 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 RA13_04590 17169e55f93c4216fcd9bd83c923a13b 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 2 17 1.6E-50 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 RA13_04590 17169e55f93c4216fcd9bd83c923a13b 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 88 101 1.6E-50 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 RA13_16845 f98dfd9b8223c4988fdd89ba2a037d57 205 Gene3D G3DSA:1.20.58.220 9 205 4.2E-53 T 13-10-2018 IPR038078 PhoU-like domain superfamily RA13_16845 f98dfd9b8223c4988fdd89ba2a037d57 205 SUPERFAMILY SSF109755 75 197 2.09E-5 T 13-10-2018 RA13_16845 f98dfd9b8223c4988fdd89ba2a037d57 205 Pfam PF01865 Protein of unknown function DUF47 9 202 5.1E-22 T 13-10-2018 IPR018445 Putative phosphate transport regulator RA13_05345 fc018c5a37206e0fdb51803d2fd803db 505 Pfam PF01943 Polysaccharide biosynthesis protein 8 286 1.3E-11 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 RA13_00765 0aed1853c7e40e59c0c412ade4147de6 250 Pfam PF00756 Putative esterase 11 241 2.0E-25 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RA13_00765 0aed1853c7e40e59c0c412ade4147de6 250 Gene3D G3DSA:3.40.50.1820 6 249 4.8E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_00765 0aed1853c7e40e59c0c412ade4147de6 250 SUPERFAMILY SSF53474 11 244 9.67E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_01145 5fb8e6c794b59d3bdce7ac7c6229aea7 170 Pfam PF05991 YacP-like NYN domain 4 166 6.4E-56 T 13-10-2018 IPR010298 Protein of unknown function DUF901 RA13_07810 f0f6133cadf14d5093e773408996f772 273 Pfam PF01618 MotA/TolQ/ExbB proton channel family 107 220 4.9E-23 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RA13_07810 f0f6133cadf14d5093e773408996f772 273 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 190 207 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site RA13_18680 b9fc2537a8677deb17585b301819c692 174 Pfam PF03358 NADPH-dependent FMN reductase 2 136 3.9E-30 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RA13_18680 b9fc2537a8677deb17585b301819c692 174 Gene3D G3DSA:3.40.50.360 1 174 7.8E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_18680 b9fc2537a8677deb17585b301819c692 174 SUPERFAMILY SSF52218 2 168 1.46E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily RA13_15855 069194d731bb4f69753957e970d98751 212 Hamap MF_01851 UPF0637 protein . 5 205 38.216 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 RA13_15855 069194d731bb4f69753957e970d98751 212 PIRSF PIRSF021332 1 209 1.7E-91 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 RA13_15855 069194d731bb4f69753957e970d98751 212 Pfam PF06335 Protein of unknown function (DUF1054) 6 203 3.6E-85 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 RA13_15855 069194d731bb4f69753957e970d98751 212 SUPERFAMILY SSF142913 2 208 1.96E-84 T 13-10-2018 RA13_15855 069194d731bb4f69753957e970d98751 212 Gene3D G3DSA:3.30.930.20 1 212 1.3E-93 T 13-10-2018 RA13_20190 48d6bee9bb89149da9d174a33417a6d4 184 Hamap MF_01515 UPF0316 protein . 10 178 30.85 T 13-10-2018 IPR022930 Protein of unknown function UPF0316 RA13_20190 48d6bee9bb89149da9d174a33417a6d4 184 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 118 170 2.3E-6 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 RA13_19725 ea2457bfd9773d3242033155825cd0d1 311 SUPERFAMILY SSF53448 4 274 6.47E-20 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RA13_19725 ea2457bfd9773d3242033155825cd0d1 311 Pfam PF03407 Nucleotide-diphospho-sugar transferase 33 170 3.3E-4 T 13-10-2018 IPR005069 Nucleotide-diphospho-sugar transferase RA13_04580 3788646efdb0116f85df24a51c66b8de 493 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 24 472 8.5E-166 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 RA13_04580 3788646efdb0116f85df24a51c66b8de 493 PIRSF PIRSF005690 10 487 2.9E-167 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 RA13_01185 0b209aa9197894aec77ebce2e100bf2f 366 SMART SM00670 166 273 3.3E-13 T 13-10-2018 IPR002716 PIN domain RA13_01185 0b209aa9197894aec77ebce2e100bf2f 366 Gene3D G3DSA:3.40.50.1010 162 297 4.3E-52 T 13-10-2018 RA13_01185 0b209aa9197894aec77ebce2e100bf2f 366 SUPERFAMILY SSF88723 166 294 8.63E-23 T 13-10-2018 IPR029060 PIN-like domain superfamily RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 Gene3D G3DSA:3.40.50.1000 3 202 1.9E-51 T 13-10-2018 IPR023214 HAD superfamily RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 1.7E-32 T 13-10-2018 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 Gene3D G3DSA:1.10.150.240 15 84 1.9E-51 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 58 184 2.1E-18 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 2.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 2.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 2.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 2.0E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RA13_18735 e2cc0db81e04bff2bcd56cbd3bc9af89 220 SUPERFAMILY SSF56784 2 207 2.13E-45 T 13-10-2018 IPR036412 HAD-like superfamily RA13_01205 7557581765a909aff28ee111fc47d7f7 363 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 53 253 3.5E-73 T 13-10-2018 IPR022414 ATP:guanido phosphotransferase, catalytic domain GO:0016301|GO:0016772 Reactome: R-HSA-71288 RA13_01205 7557581765a909aff28ee111fc47d7f7 363 ProSitePatterns PS00112 Phosphagen kinase active site signature. 167 173 - T 13-10-2018 IPR022415 ATP:guanido phosphotransferase active site GO:0016301|GO:0016772 Reactome: R-HSA-71288 RA13_01205 7557581765a909aff28ee111fc47d7f7 363 Hamap MF_00602 Protein-arginine kinase [mcsB]. 13 350 40.971 T 13-10-2018 IPR023660 Protein arginine kinase GO:0016775 RA13_01205 7557581765a909aff28ee111fc47d7f7 363 SUPERFAMILY SSF55931 3 268 1.46E-88 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RA13_01205 7557581765a909aff28ee111fc47d7f7 363 Gene3D G3DSA:3.30.590.10 8 264 2.4E-71 T 13-10-2018 RA13_03025 bb5116cc70a10af00dbc8c01d659741f 220 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 13-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 RA13_03025 bb5116cc70a10af00dbc8c01d659741f 220 SMART SM00882 6 202 4.9E-74 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_03025 bb5116cc70a10af00dbc8c01d659741f 220 Gene3D G3DSA:3.40.1080.10 1 216 5.1E-106 T 13-10-2018 RA13_03025 bb5116cc70a10af00dbc8c01d659741f 220 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 209 6.6E-97 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 RA13_03025 bb5116cc70a10af00dbc8c01d659741f 220 Pfam PF01144 Coenzyme A transferase 8 201 1.2E-46 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RA13_03025 bb5116cc70a10af00dbc8c01d659741f 220 SUPERFAMILY SSF100950 3 213 5.71E-73 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_20325 0cab36f0622c21ba15643a323f287e12 254 Pfam PF04536 TPM domain 36 149 3.4E-22 T 13-10-2018 IPR007621 TPM domain RA13_20325 0cab36f0622c21ba15643a323f287e12 254 Gene3D G3DSA:3.10.310.50 26 158 6.3E-20 T 13-10-2018 RA13_14270 bf52da10084d390e9c4b4465285335f1 284 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 47 271 2.2E-38 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RA13_14270 bf52da10084d390e9c4b4465285335f1 284 Gene3D G3DSA:3.20.20.190 22 283 1.6E-71 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_14270 bf52da10084d390e9c4b4465285335f1 284 SUPERFAMILY SSF51695 42 275 1.67E-59 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RA13_07945 2f4188ff0c6c2f5932f8211f0cd1e1a3 567 Pfam PF06160 Septation ring formation regulator, EzrA 4 559 7.1E-173 T 13-10-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 RA13_07945 2f4188ff0c6c2f5932f8211f0cd1e1a3 567 Hamap MF_00728 Septation ring formation regulator EzrA [ezrA]. 1 563 22.407 T 13-10-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 RA13_11045 c60321191630975a363fc156b931ca2c 251 Pfam PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 21 192 7.2E-74 T 13-10-2018 IPR009920 Heptaprenyl diphosphate synthase subunit 1 GO:0009234 KEGG: 00900+2.5.1.30|MetaCyc: PWY-5807 RA13_02980 8354b0cf358721cc50360fce2f3cbb91 369 Gene3D G3DSA:2.60.120.380 88 196 2.0E-5 T 13-10-2018 RA13_19620 969fbcb8c824a6183588649f50350ad4 478 Pfam PF00939 Sodium:sulfate symporter transmembrane region 14 478 4.8E-183 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 RA13_19620 969fbcb8c824a6183588649f50350ad4 478 PIRSF PIRSF002457 1 478 1.3E-171 T 13-10-2018 IPR030676 Citrate carrier CitT-related RA13_19620 969fbcb8c824a6183588649f50350ad4 478 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 32 472 9.8E-136 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 RA13_06635 c150c9e24319051d0cc7177d04cba09d 55 Pfam PF05952 Bacillus competence pheromone ComX 1 53 2.5E-23 T 13-10-2018 IPR009233 Competence pheromone ComX, Bacillus RA13_01675 0ce14703f7df23d9505261517a94ee9a 217 PIRSF PIRSF000705 1 217 2.0E-67 T 13-10-2018 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 RA13_01675 0ce14703f7df23d9505261517a94ee9a 217 Pfam PF01712 Deoxynucleoside kinase 12 211 2.3E-69 T 13-10-2018 IPR031314 Deoxynucleoside kinase domain RA13_01675 0ce14703f7df23d9505261517a94ee9a 217 SUPERFAMILY SSF52540 11 211 1.46E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_01675 0ce14703f7df23d9505261517a94ee9a 217 Gene3D G3DSA:3.40.50.300 9 214 9.6E-56 T 13-10-2018 RA13_17450 b66e676a74154039905c29c24936b1d2 254 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 248 1.4E-109 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RA13_17450 b66e676a74154039905c29c24936b1d2 254 Gene3D G3DSA:3.20.20.70 1 254 2.4E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RA13_17450 b66e676a74154039905c29c24936b1d2 254 SUPERFAMILY SSF110399 1 239 3.4E-81 T 13-10-2018 RA13_17450 b66e676a74154039905c29c24936b1d2 254 Hamap MF_00443 Thiazole synthase [thiG]. 1 254 42.025 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RA13_00860 583cbe89e5c1e526dc1f396725922859 63 Gene3D G3DSA:1.20.120.450 2 45 3.7E-6 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_00860 583cbe89e5c1e526dc1f396725922859 63 Pfam PF05163 DinB family 9 40 5.0E-6 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB RA13_00860 583cbe89e5c1e526dc1f396725922859 63 SUPERFAMILY SSF109854 11 40 3.66E-6 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes RA13_10130 a9681f2adad84ff6c21c1c735adf2e07 129 TIGRFAM TIGR02849 spore_III_AD: stage III sporulation protein AD 25 125 1.6E-40 T 13-10-2018 IPR014211 Stage III sporulation protein AD RA13_10130 a9681f2adad84ff6c21c1c735adf2e07 129 Pfam PF06686 Stage III sporulation protein AC/AD protein family 69 123 7.4E-20 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family RA13_10130 a9681f2adad84ff6c21c1c735adf2e07 129 Pfam PF06686 Stage III sporulation protein AC/AD protein family 1 55 1.7E-13 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family RA13_04545 e57854b3c5ffd5ebe451e24830c5b45f 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 313 1.4E-51 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 RA13_21510 b5e08d37a9f6736ae596aea03bb048e4 35 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 8 30 8.2E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_21510 b5e08d37a9f6736ae596aea03bb048e4 35 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 10 29 6.7E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_16045 b0725a43a80da01ebda11537f7d8db27 157 Gene3D G3DSA:3.90.1170.40 1 144 4.2E-55 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RA13_16045 b0725a43a80da01ebda11537f7d8db27 157 Pfam PF02391 MoaE protein 6 117 5.5E-38 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RA13_16045 b0725a43a80da01ebda11537f7d8db27 157 SUPERFAMILY SSF54690 4 136 1.11E-46 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RA13_05590 fa11aa22d85337a32f88c9de6729787f 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 209 5.2E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_05590 fa11aa22d85337a32f88c9de6729787f 227 Gene3D G3DSA:1.10.3720.10 14 211 5.7E-32 T 13-10-2018 IPR035906 MetI-like superfamily RA13_05590 fa11aa22d85337a32f88c9de6729787f 227 SUPERFAMILY SSF161098 17 199 9.68E-36 T 13-10-2018 IPR035906 MetI-like superfamily RA13_15675 e963fb698a02260f04206971ba7e4408 418 Pfam PF07670 Nucleoside recognition 44 140 1.4E-6 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RA13_15675 e963fb698a02260f04206971ba7e4408 418 TIGRFAM TIGR02871 spore_ylbJ: sporulation integral membrane protein YlbJ 9 390 4.0E-140 T 13-10-2018 IPR014226 Sporulation integral membrane protein YlbJ RA13_02500 a4d70104ec5024780e911909e7c59517 405 Pfam PF04235 Protein of unknown function (DUF418) 246 396 7.0E-47 T 13-10-2018 IPR007349 Domain of unknown function DUF418 RA13_13180 928be285052d7b7e69e20f969d95433e 174 Gene3D G3DSA:3.30.300.20 1 157 3.2E-49 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta RA13_13180 928be285052d7b7e69e20f969d95433e 174 Pfam PF02566 OsmC-like protein 62 164 8.9E-23 T 13-10-2018 IPR003718 OsmC/Ohr family RA13_13180 928be285052d7b7e69e20f969d95433e 174 SUPERFAMILY SSF82784 4 166 4.84E-41 T 13-10-2018 IPR036102 OsmC/Ohr superfamily RA13_03040 df5235308746a9c7e724727d9e0c1830 379 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 25 375 1.7E-14 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RA13_03040 df5235308746a9c7e724727d9e0c1830 379 SUPERFAMILY SSF51726 23 379 3.01E-82 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_03040 df5235308746a9c7e724727d9e0c1830 379 Gene3D G3DSA:3.20.20.210 15 379 3.9E-129 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RA13_01630 3f2a2f4d55a993438eba2421911c1629 74 Pfam PF10704 Protein of unknown function (DUF2508) 3 69 2.3E-23 T 13-10-2018 IPR019644 Protein of unknown function DUF2508 RA13_12905 cd969ebf3a243f93eeb9af9f8d3470a9 118 Pfam PF14037 YoqO-like protein 3 114 5.3E-18 T 13-10-2018 IPR025621 YoqO-like protein RA13_01850 122dad6a0923300e910e489e6b22ebc5 146 Pfam PF06713 Bacterial PH domain 61 136 7.5E-17 T 13-10-2018 IPR009589 Sublancin immunity protein SunI GO:0030153 RA13_09490 31b5d068caaba0b1fa0520366767f467 118 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 1 105 25.552 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RA13_09490 31b5d068caaba0b1fa0520366767f467 118 Gene3D G3DSA:3.30.460.10 1 108 4.3E-40 T 13-10-2018 RA13_09490 31b5d068caaba0b1fa0520366767f467 118 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 3.4E-37 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RA13_09490 31b5d068caaba0b1fa0520366767f467 118 SUPERFAMILY SSF81301 1 114 3.76E-41 T 13-10-2018 RA13_09490 31b5d068caaba0b1fa0520366767f467 118 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 8.4E-28 T 13-10-2018 RA13_21100 b9fe35c3237e093ed55cd0dae88ed7d9 48 Pfam PF13040 Fur-regulated basic protein B 3 40 2.1E-16 T 13-10-2018 IPR025004 Transcriptional regulatory protein SenN/SenS RA13_03760 334e8d64b17116c7d5b20757a52960e2 184 Gene3D G3DSA:2.30.30.1210 38 184 3.0E-68 T 13-10-2018 RA13_03760 334e8d64b17116c7d5b20757a52960e2 184 Pfam PF07563 Protein of unknown function (DUF1541) 127 178 1.2E-27 T 13-10-2018 IPR011438 Domain of unknown function DUF1541 RA13_03760 334e8d64b17116c7d5b20757a52960e2 184 Pfam PF07563 Protein of unknown function (DUF1541) 63 114 5.6E-28 T 13-10-2018 IPR011438 Domain of unknown function DUF1541 RA13_02885 009160f3b5c04552272dc6e3ebd73a46 50 Gene3D G3DSA:2.180.10.10 1 49 9.5E-9 T 13-10-2018 RA13_02885 009160f3b5c04552272dc6e3ebd73a46 50 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 8 48 5.1E-10 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RA13_17670 efffb6aa300bbfe05d9d6dadf1200a00 191 ProDom PD032558 YJAV MED CDS GENES ARGF 1 119 2.0E-34 T 13-10-2018 RA13_00505 8a518a2a08cc6b29addefad8067dbcad 462 Gene3D G3DSA:1.20.1740.10 5 454 6.5E-58 T 13-10-2018 RA13_00505 8a518a2a08cc6b29addefad8067dbcad 462 PIRSF PIRSF006060 2 460 1.7E-66 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RA13_00505 8a518a2a08cc6b29addefad8067dbcad 462 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RA13_00505 8a518a2a08cc6b29addefad8067dbcad 462 Pfam PF00324 Amino acid permease 14 426 6.7E-109 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RA13_03850 4fa566fd45851923ed94a34ca8b78f85 174 Gene3D G3DSA:3.40.430.10 1 174 1.8E-47 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RA13_03850 4fa566fd45851923ed94a34ca8b78f85 174 Pfam PF01872 RibD C-terminal domain 4 168 1.3E-20 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RA13_03850 4fa566fd45851923ed94a34ca8b78f85 174 SUPERFAMILY SSF53597 4 172 1.44E-36 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RA13_16850 d66bb7b7082bd37bbc85089b4c21f15c 332 Pfam PF01384 Phosphate transporter family 22 320 4.8E-90 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RA13_14425 58e95ce40863b03291187e3399ed7e81 152 SMART SM00860 22 135 5.2E-11 T 13-10-2018 IPR018958 Knr4/Smi1-like domain RA13_14425 58e95ce40863b03291187e3399ed7e81 152 Pfam PF14567 SMI1-KNR4 cell-wall 7 137 3.7E-32 T 13-10-2018 RA13_14425 58e95ce40863b03291187e3399ed7e81 152 Gene3D G3DSA:3.40.1580.10 1 152 3.4E-42 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily RA13_14425 58e95ce40863b03291187e3399ed7e81 152 SUPERFAMILY SSF160631 1 150 1.7E-39 T 13-10-2018 RA13_12840 b0a19ad18f42cbb56b4e32c9e05b7df3 253 Gene3D G3DSA:3.40.630.100 50 253 5.8E-64 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily RA13_12840 b0a19ad18f42cbb56b4e32c9e05b7df3 253 Pfam PF05908 Poly-gamma-glutamate hydrolase 56 243 1.4E-68 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 Gene3D G3DSA:1.20.1250.20 237 391 1.5E-17 T 13-10-2018 RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 PRINTS PR01035 Tetracycline resistance protein signature 331 354 3.3E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 PRINTS PR01035 Tetracycline resistance protein signature 38 57 3.3E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 PRINTS PR01035 Tetracycline resistance protein signature 69 93 3.3E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 PRINTS PR01035 Tetracycline resistance protein signature 126 148 3.3E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 SUPERFAMILY SSF103473 1 385 2.09E-63 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 Gene3D G3DSA:1.20.1250.20 1 236 1.7E-41 T 13-10-2018 RA13_06745 2841a8a8b1477d452f424d496bf04c29 392 Pfam PF07690 Major Facilitator Superfamily 1 256 4.9E-29 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_17205 f1d905069b17f478c60cbd3a3a7e79b5 186 Pfam PF07849 Protein of unknown function (DUF1641) 118 154 1.8E-13 T 13-10-2018 IPR012440 Protein of unknown function DUF1641 RA13_05755 19a8afd509dc4321dcd1aeced646b50a 175 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 150 6.5E-34 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase RA13_05755 19a8afd509dc4321dcd1aeced646b50a 175 PIRSF PIRSF030780 1 159 8.3E-20 T 13-10-2018 IPR016956 Inner membrane protein YdjM RA13_12305 c0263520acdef458797bc47a9d7f280a 352 Pfam PF00487 Fatty acid desaturase 58 297 6.9E-36 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RA13_11970 6d65907f97a930bc3fd8b3e487df13ba 249 Pfam PF01925 Sulfite exporter TauE/SafE 9 242 4.6E-28 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RA13_12770 73354caed604937724695949d71e41b5 55 Pfam PF09388 Spo0E like sporulation regulatory protein 6 47 3.2E-16 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 RA13_12770 73354caed604937724695949d71e41b5 55 Gene3D G3DSA:1.20.58.990 3 52 1.1E-12 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 RA13_12770 73354caed604937724695949d71e41b5 55 SUPERFAMILY SSF140500 4 51 6.93E-16 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 SUPERFAMILY SSF51735 6 253 6.22E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 1.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 1.4E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 8.3E-67 T 13-10-2018 RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 Gene3D G3DSA:3.40.50.720 1 256 1.1E-82 T 13-10-2018 RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 2.1E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.1E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 2.1E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.1E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 2.1E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.1E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RA13_00110 9e26c8c8250481dc0d4782c75d52ff10 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RA13_18270 c60fda7a7429367098e86c15232cf534 408 PIRSF PIRSF037259 2 407 5.9E-135 T 13-10-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 RA13_18270 c60fda7a7429367098e86c15232cf534 408 Pfam PF05975 Bacterial ABC transporter protein EcsB 6 385 1.9E-120 T 13-10-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 RA13_10485 2ffe578a1fc5f3b977e4995b0122905b 68 Pfam PF14164 YqzH-like protein 1 63 2.5E-25 T 13-10-2018 IPR025546 YqzH-like protein RA13_11590 81227330daf67f95c71a22cefa940d4d 187 Pfam PF09911 Uncharacterized protein conserved in bacteria (DUF2140) 3 183 2.2E-59 T 13-10-2018 IPR018672 Protein of unknown function DUF2140 RA13_10700 363aa6550ae4b39a74f143a6d752f218 146 Pfam PF10787 Uncharacterised protein from bacillus cereus group 1 140 5.6E-71 T 13-10-2018 IPR019723 Uncharacterised protein, YfmQ RA13_18345 13734162280d6db9356f056650de248b 76 Pfam PF14147 Sporulation protein YhaL 4 55 1.5E-28 T 13-10-2018 IPR025428 Sporulation protein YhaL RA13_19805 212e5603c28cbb09e8688db5fb2f1eff 120 SUPERFAMILY SSF54593 1 117 1.31E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_19805 212e5603c28cbb09e8688db5fb2f1eff 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 116 5.9E-12 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RA13_19805 212e5603c28cbb09e8688db5fb2f1eff 120 Gene3D G3DSA:3.10.180.10 1 119 1.1E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RA13_12780 d6ceb469fdd92b3697afeff9f7a8cac4 148 Pfam PF10747 Sporulation inhibitor of replication protein SirA 3 143 2.1E-47 T 13-10-2018 IPR019683 Sporulation inhibitor of replication protein SirA RA13_12780 d6ceb469fdd92b3697afeff9f7a8cac4 148 Gene3D G3DSA:3.30.310.250 1 148 1.0E-58 T 13-10-2018 IPR038449 SirA superfamily RA13_15660 718cb4c53d547e71ff63dcc3028a5416 415 Gene3D G3DSA:3.40.50.620 1 245 2.3E-40 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RA13_15660 718cb4c53d547e71ff63dcc3028a5416 415 Pfam PF05636 HIGH Nucleotidyl Transferase 2 389 4.1E-136 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 RA13_15660 718cb4c53d547e71ff63dcc3028a5416 415 SUPERFAMILY SSF52374 9 234 9.12E-18 T 13-10-2018 RA13_15660 718cb4c53d547e71ff63dcc3028a5416 415 Hamap MF_01539 UPF0348 protein . 2 404 40.599 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 RA13_15640 b06ce1c02117ca30dfc1eee524b08365 197 Pfam PF13921 Myb-like DNA-binding domain 9 60 5.7E-5 T 13-10-2018 RA13_15640 b06ce1c02117ca30dfc1eee524b08365 197 TIGRFAM TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family 4 78 5.0E-44 T 13-10-2018 IPR014243 Transcription factor, RsfA RA13_10150 f5026f6bcbb485314da1c86056d3ebae 213 Gene3D G3DSA:3.30.300.270 98 213 2.8E-41 T 13-10-2018 IPR038503 Stage III sporulation protein AH-like superfamily RA13_10150 f5026f6bcbb485314da1c86056d3ebae 213 Pfam PF12685 SpoIIIAH-like protein 5 202 1.6E-42 T 13-10-2018 IPR024232 Stage III sporulation protein AH-like RA13_06455 fb638173fa45d83bb16297dc3bdb9c9c 158 Pfam PF02681 Divergent PAP2 family 5 148 4.7E-49 T 13-10-2018 IPR003832 Protein of unknown function DUF212 RA13_03660 686e8e5b09e90c336dc3cdd93dcf3678 257 TIGRFAM TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family 3 79 4.3E-44 T 13-10-2018 IPR014243 Transcription factor, RsfA RA13_12750 028dfef3f25763bc6fe1d6db5b495eb5 142 Pfam PF11084 Protein of unknown function (DUF2621) 4 141 8.1E-72 T 13-10-2018 IPR020203 Uncharacterised protein family, YneK RA13_12750 028dfef3f25763bc6fe1d6db5b495eb5 142 ProDom PD086666 YNEK BH2332 11 141 7.0E-57 T 13-10-2018 IPR020203 Uncharacterised protein family, YneK RA13_08840 633aa016a20bf183103a9cf13980cdc6 427 PIRSF PIRSF006351 3 427 1.9E-141 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 RA13_08840 633aa016a20bf183103a9cf13980cdc6 427 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 14 424 4.2E-134 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 RA13_08840 633aa016a20bf183103a9cf13980cdc6 427 Pfam PF02378 Phosphotransferase system, EIIC 31 352 8.8E-60 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RA13_08840 633aa016a20bf183103a9cf13980cdc6 427 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 14 424 4.2E-134 T 13-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 RA13_04800 7aca209309967d2378182546a77a68aa 98 Pfam PF10719 Late competence development protein ComFB 4 82 8.1E-14 T 13-10-2018 IPR019657 Late competence development protein ComFB RA13_10760 ae161b907a514ab8d1c8bbf606d8637b 68 Pfam PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) 5 67 4.5E-30 T 13-10-2018 IPR018652 Protein of unknown function DUF2082, nucleic-acid-binding, Zn-ribbon RA13_02645 7b513699315434193deeda63e4adedf5 116 SUPERFAMILY SSF159121 29 115 3.53E-27 T 13-10-2018 IPR036166 YxeA-like superfamily RA13_02645 7b513699315434193deeda63e4adedf5 116 Gene3D G3DSA:2.40.50.480 29 115 1.1E-32 T 13-10-2018 IPR036166 YxeA-like superfamily RA13_02645 7b513699315434193deeda63e4adedf5 116 Pfam PF06486 Protein of unknown function (DUF1093) 34 102 1.3E-20 T 13-10-2018 IPR006542 Protein of unknown function DUF1093 RA13_02645 7b513699315434193deeda63e4adedf5 116 TIGRFAM TIGR01655 yxeA_fam: conserved hypothetical protein 1 113 1.4E-34 T 13-10-2018 IPR006542 Protein of unknown function DUF1093 RA13_20245 aaf484f6c5f80ef20d1a266bfb699043 352 Pfam PF01757 Acyltransferase family 6 313 6.9E-25 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RA13_07990 d5419ec8823c7768e69af6a2310c0021 164 Pfam PF06271 RDD family 26 152 2.6E-20 T 13-10-2018 IPR010432 RDD RA13_21365 46d7179822f73cb8bb2e4ec1bf43f97a 255 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 47.911 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 RA13_21365 46d7179822f73cb8bb2e4ec1bf43f97a 255 Gene3D G3DSA:3.20.20.370 2 254 3.5E-107 T 13-10-2018 RA13_21365 46d7179822f73cb8bb2e4ec1bf43f97a 255 Pfam PF03746 LamB/YcsF family 4 242 4.4E-105 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 RA13_21365 46d7179822f73cb8bb2e4ec1bf43f97a 255 SUPERFAMILY SSF88713 3 251 2.37E-102 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RA13_17935 2fc4c05921a8fe1837c552b084280ab9 327 Pfam PF08757 CotH kinase protein 40 317 3.5E-38 T 13-10-2018 IPR014867 Spore coat protein CotH RA13_17675 fee97da55ddc48c8db6cedca3a03d198 244 Gene3D G3DSA:3.40.50.1820 28 243 7.9E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_17675 fee97da55ddc48c8db6cedca3a03d198 244 SUPERFAMILY SSF53474 51 242 2.57E-12 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold RA13_21780 b36b0c949a8df939a2561041b26b695d 199 Gene3D G3DSA:2.40.440.10 72 199 3.7E-28 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RA13_21780 b36b0c949a8df939a2561041b26b695d 199 Pfam PF03734 L,D-transpeptidase catalytic domain 74 198 2.4E-18 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RA13_21780 b36b0c949a8df939a2561041b26b695d 199 SUPERFAMILY SSF141523 71 198 4.97E-24 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RA13_15910 2336f6ad9cb1dd3d00c5b5fd480a1271 51 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 26 48 2.8E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_15910 2336f6ad9cb1dd3d00c5b5fd480a1271 51 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 24 49 4.1E-16 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_21585 729364a6be08703c5fb23915e197927e 369 Pfam PF03845 Spore germination protein 5 325 2.4E-92 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 RA13_21585 729364a6be08703c5fb23915e197927e 369 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 6 363 1.2E-81 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 RA13_10530 70f558fee34043b5802a59c3a0fbe428 75 Pfam PF13025 Protein of unknown function (DUF3886) 6 72 5.6E-22 T 13-10-2018 IPR024980 Protein of unknown function DUF3886 RA13_04725 8d7382c62c1ce6f2cc7ab5d496a131f0 219 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 30 219 3.5E-90 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase RA13_04725 8d7382c62c1ce6f2cc7ab5d496a131f0 219 Pfam PF02397 Bacterial sugar transferase 34 213 7.0E-66 T 13-10-2018 IPR003362 Bacterial sugar transferase RA13_16440 c9c4fa83b374d97444d9b9aedfebd600 340 Pfam PF01757 Acyltransferase family 7 306 2.2E-22 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RA13_05000 9b5885e17850444210fb488330e3cd6e 242 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 240 5.4E-104 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RA13_05000 9b5885e17850444210fb488330e3cd6e 242 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 10 224 1.6E-20 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 RA13_05000 9b5885e17850444210fb488330e3cd6e 242 SUPERFAMILY SSF100950 1 239 1.44E-92 T 13-10-2018 IPR037171 NagB/RpiA transferase-like RA13_05000 9b5885e17850444210fb488330e3cd6e 242 Gene3D G3DSA:3.40.50.1360 1 242 4.2E-107 T 13-10-2018 RA13_05000 9b5885e17850444210fb488330e3cd6e 242 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 241 43.796 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 RA13_11615 2b93d085ada557bfb787e8f758a26eb3 144 Gene3D G3DSA:2.170.150.20 1 144 1.1E-63 T 13-10-2018 RA13_11615 2b93d085ada557bfb787e8f758a26eb3 144 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 4 127 37.314 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RA13_11615 2b93d085ada557bfb787e8f758a26eb3 144 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 4 135 1.9E-66 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RA13_11615 2b93d085ada557bfb787e8f758a26eb3 144 Pfam PF01641 SelR domain 10 126 7.4E-50 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RA13_11615 2b93d085ada557bfb787e8f758a26eb3 144 SUPERFAMILY SSF51316 4 143 6.8E-61 T 13-10-2018 IPR011057 Mss4-like superfamily RA13_05515 fbfcad7aa1b5679a3bede1978ed410c2 306 Gene3D G3DSA:3.20.20.150 17 292 1.1E-19 T 13-10-2018 RA13_05515 fbfcad7aa1b5679a3bede1978ed410c2 306 SUPERFAMILY SSF51658 36 263 2.05E-13 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily RA13_06545 7a56b52c8ce4d0889c97aed92db9e82f 79 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 3 78 4.0E-13 T 13-10-2018 IPR024962 YukD-like RA13_06545 7a56b52c8ce4d0889c97aed92db9e82f 79 Gene3D G3DSA:3.10.20.90 1 79 9.7E-43 T 13-10-2018 RA13_06545 7a56b52c8ce4d0889c97aed92db9e82f 79 PIRSF PIRSF037793 1 79 5.1E-32 T 13-10-2018 IPR014921 EsaB RA13_08820 f6685b3063d644d0a78ea7b1d831fd15 202 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 20 202 3.5E-25 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like RA13_17960 13948e808e911d17f07ac12d3348d44e 205 Pfam PF10737 Spore germination protein GerPC 24 196 2.9E-64 T 13-10-2018 IPR019673 Spore germination protein GerPC RA13_03970 b2eff9412e1ce0d000f167770ab72151 121 ProDom PD015812 YOPD YWLA YOAG 3 115 6.0E-32 T 13-10-2018 IPR031374 Uncharacterised protein family UPF0715 RA13_03970 b2eff9412e1ce0d000f167770ab72151 121 Pfam PF17094 Uncharacterised protein family (UPF0715) 4 115 7.0E-37 T 13-10-2018 IPR031374 Uncharacterised protein family UPF0715 RA13_10820 53cbeae3c122240ae97b88dad4d1dddd 179 Pfam PF13047 Protein of unknown function (DUF3907) 28 171 2.5E-58 T 13-10-2018 IPR025013 Protein of unknown function DUF3907 RA13_21770 2a1c5eedea65527094d486374f211359 225 SUPERFAMILY SSF161098 20 213 2.35E-47 T 13-10-2018 IPR035906 MetI-like superfamily RA13_21770 2a1c5eedea65527094d486374f211359 225 Gene3D G3DSA:1.10.3720.10 9 223 1.0E-56 T 13-10-2018 IPR035906 MetI-like superfamily RA13_21770 2a1c5eedea65527094d486374f211359 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 19 116 2.1E-31 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RA13_21770 2a1c5eedea65527094d486374f211359 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 221 1.1E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_14700 1a714e85617cb3854dc5d63f0e6a6d2c 409 Gene3D G3DSA:3.40.710.10 87 389 1.8E-70 T 13-10-2018 RA13_14700 1a714e85617cb3854dc5d63f0e6a6d2c 409 SUPERFAMILY SSF56601 89 384 2.11E-73 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_14700 1a714e85617cb3854dc5d63f0e6a6d2c 409 Pfam PF00144 Beta-lactamase 102 383 1.0E-51 T 13-10-2018 IPR001466 Beta-lactamase-related RA13_17775 0111d088c1381a563c1b9ddd3358584c 97 PIRSF PIRSF037672 1 97 7.1E-41 T 13-10-2018 IPR017259 Uncharacterised conserved protein UCP037672 RA13_17775 0111d088c1381a563c1b9ddd3358584c 97 Pfam PF12650 Domain of unknown function (DUF3784) 11 93 4.7E-9 T 13-10-2018 IPR017259 Uncharacterised conserved protein UCP037672 RA13_13170 e7c2eda95b408101c1faa452792ef28c 242 Gene3D G3DSA:3.40.30.10 1 208 5.3E-76 T 13-10-2018 RA13_13170 e7c2eda95b408101c1faa452792ef28c 242 Pfam PF01323 DSBA-like thioredoxin domain 2 204 4.5E-44 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RA13_13170 e7c2eda95b408101c1faa452792ef28c 242 SUPERFAMILY SSF52833 1 211 2.39E-45 T 13-10-2018 IPR036249 Thioredoxin-like superfamily RA13_20210 b60db8530cdcb54f2839432bd2c12445 486 Gene3D G3DSA:2.60.40.1630 76 217 2.0E-13 T 13-10-2018 RA13_20210 b60db8530cdcb54f2839432bd2c12445 486 Pfam PF13786 Domain of unknown function (DUF4179) 46 135 3.0E-13 T 13-10-2018 IPR025436 Domain of unknown function DUF4179 RA13_21025 71eaed4225533056c7d2b4a3109e1240 116 Gene3D G3DSA:2.30.30.110 1 116 7.3E-52 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RA13_21025 71eaed4225533056c7d2b4a3109e1240 116 SUPERFAMILY SSF50118 2 113 2.78E-41 T 13-10-2018 RA13_21025 71eaed4225533056c7d2b4a3109e1240 116 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 4 111 4.7E-33 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 RA13_21025 71eaed4225533056c7d2b4a3109e1240 116 PIRSF PIRSF033490 1 113 2.8E-39 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 RA13_19275 19bb7c078a97ef894a23db2a06b85dc1 361 Pfam PF01757 Acyltransferase family 8 327 4.5E-17 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RA13_00045 9485ca62df79c82201067bb27f9c7fab 537 Pfam PF14266 Putative component of 'biosynthetic module' 40 525 7.4E-162 T 13-10-2018 IPR025647 Putative component of 'biosynthetic module' RA13_16915 3896526bfbdce01c792f7afa02ac2d4e 141 Pfam PF10934 Protein of unknown function (DUF2634) 25 123 2.1E-24 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 RA13_16915 3896526bfbdce01c792f7afa02ac2d4e 141 ProDom PD033094 XKDS PHAGE-LIKE PBSX ELEMENT PHAGE LIN1286 RELATED YQBS 11 137 4.0E-53 T 13-10-2018 IPR020288 Protein of unknown function DUF2634 RA13_17505 16ffcd7175778be9fce9cf3a99be7dfb 122 Hamap MF_01861 UPF0738 protein . 3 122 28.875 T 13-10-2018 IPR020908 Uncharacterised protein family UPF0738 RA13_15390 85becec0ce1bc16617a80de3adb00b7a 354 Pfam PF01384 Phosphate transporter family 16 305 1.1E-45 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RA13_00440 bd640a5a7fad9b9bffb9758aff8e80f7 73 Gene3D G3DSA:3.40.50.12580 9 59 5.8E-11 T 13-10-2018 RA13_00440 bd640a5a7fad9b9bffb9758aff8e80f7 73 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 7 72 3.5E-14 T 13-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 RA13_21860 d62617949dcdbbec34110bff7d6a1790 257 Pfam PF10127 Predicted nucleotidyltransferase 1 248 2.3E-95 T 13-10-2018 IPR018775 Nucleotidyltransferase, predicted RA13_17755 f6d08ad7b640d93419fdc3fff0e2c4df 65 Pfam PF12758 Protein of unknown function (DUF3813) 1 64 6.0E-29 T 13-10-2018 IPR024217 Protein of unknown function DUF3813 RA13_09000 5fb79b82d14d69191d0ca8ddede67efe 56 Pfam PF17449 Uncharacterized protein YrzK 1 54 6.4E-25 T 13-10-2018 IPR035378 Uncharacterized protein YrzK RA13_09000 5fb79b82d14d69191d0ca8ddede67efe 56 ProDom PD051845 YRZK 7 53 6.0E-12 T 13-10-2018 IPR035378 Uncharacterized protein YrzK RA13_19795 8c760f593b8fdb658f39993228dad431 58 Pfam PF10055 Uncharacterized small protein (DUF2292) 11 47 1.7E-16 T 13-10-2018 IPR018743 Protein of unknown function DUF2292 RA13_13985 a39d08d06f441d2cf35316073145ba5a 325 SUPERFAMILY SSF56349 30 217 3.24E-7 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RA13_17540 69a920701b722679b0f5d9e3bd349c39 387 PIRSF PIRSF007487 1 387 1.3E-87 T 13-10-2018 IPR021176 Competence-induced protein CoiA RA13_17540 69a920701b722679b0f5d9e3bd349c39 387 Pfam PF06054 Competence protein CoiA-like family 2 375 1.8E-89 T 13-10-2018 IPR010330 Competence-induced protein CoiA-like RA13_04220 999867ec1f091d22768bd8d7be0f4c81 163 SUPERFAMILY SSF55729 1 162 2.35E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_04220 999867ec1f091d22768bd8d7be0f4c81 163 Pfam PF00583 Acetyltransferase (GNAT) family 31 136 5.3E-19 T 13-10-2018 IPR000182 GNAT domain RA13_04220 999867ec1f091d22768bd8d7be0f4c81 163 Gene3D G3DSA:3.40.630.30 1 163 1.2E-49 T 13-10-2018 RA13_07310 e477458e0652c804c69a02314883c93d 272 Gene3D G3DSA:3.90.226.10 1 209 2.5E-77 T 13-10-2018 RA13_07310 e477458e0652c804c69a02314883c93d 272 SUPERFAMILY SSF52096 8 267 4.41E-78 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RA13_07310 e477458e0652c804c69a02314883c93d 272 TIGRFAM TIGR01929 menB: naphthoate synthase 11 268 6.0E-131 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 RA13_07310 e477458e0652c804c69a02314883c93d 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 110 130 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RA13_07310 e477458e0652c804c69a02314883c93d 272 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 5 271 55.695 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 RA13_07310 e477458e0652c804c69a02314883c93d 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 267 2.8E-92 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RA13_07310 e477458e0652c804c69a02314883c93d 272 Gene3D G3DSA:1.10.12.10 210 260 2.8E-28 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RA13_15690 8cd40f263f67212d34e7b86cc33c6dce 90 Pfam PF09902 Uncharacterized protein conserved in bacteria (DUF2129) 5 74 2.6E-31 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 RA13_15690 8cd40f263f67212d34e7b86cc33c6dce 90 PIRSF PIRSF031653 1 90 7.8E-35 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 RA13_15690 8cd40f263f67212d34e7b86cc33c6dce 90 Hamap MF_01126 UPF0298 protein . 1 78 22.659 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 RA13_00495 3ea7fba1b21cab2623e80cd06fec4d63 63 ProDom PD053503 YBXH ORF3 1 63 2.0E-23 T 13-10-2018 IPR035314 Protein of unknown function DUF5370 RA13_00495 3ea7fba1b21cab2623e80cd06fec4d63 63 Pfam PF17340 Family of unknown function (DUF5370) 1 63 3.6E-37 T 13-10-2018 IPR035314 Protein of unknown function DUF5370 RA13_18515 de0cd652ba339332108ccbe0ce775ad4 131 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 4 117 17.907 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RA13_18515 de0cd652ba339332108ccbe0ce775ad4 131 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 112 1.4E-21 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RA13_18780 5570c20cdd4236310173b8dc24d29a89 194 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 16 190 4.9E-33 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like RA13_18780 5570c20cdd4236310173b8dc24d29a89 194 TIGRFAM TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family 11 191 6.1E-50 T 13-10-2018 IPR014247 Sporulation lipoprotein YhcN/YlaJ GO:0030435 RA13_05395 4b9198643c6498d7947cff496c9eecc3 238 Pfam PF02754 Cysteine-rich domain 132 215 2.1E-15 T 13-10-2018 IPR004017 Cysteine-rich domain RA13_05395 4b9198643c6498d7947cff496c9eecc3 238 Pfam PF02754 Cysteine-rich domain 3 84 6.4E-18 T 13-10-2018 IPR004017 Cysteine-rich domain RA13_05395 4b9198643c6498d7947cff496c9eecc3 238 Hamap MF_02105 Lactate utilization protein A [lutA]. 1 238 64.089 T 13-10-2018 IPR022822 Lactate utilization protein A GO:0006089 RA13_18980 fd15e25d776d3e09481a7ef80de977c4 119 Pfam PF07875 Coat F domain 18 78 6.3E-20 T 13-10-2018 IPR012851 Spore coat protein CotF-like RA13_13080 8971f32a0d9f0bc3fe2bcd460b3d33a9 400 Gene3D G3DSA:1.20.1250.20 22 396 1.6E-44 T 13-10-2018 RA13_13080 8971f32a0d9f0bc3fe2bcd460b3d33a9 400 SUPERFAMILY SSF103473 15 394 1.96E-52 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_13080 8971f32a0d9f0bc3fe2bcd460b3d33a9 400 Pfam PF07690 Major Facilitator Superfamily 28 357 5.7E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_15550 6d885318ba09dc191be7b014eed9b6a0 119 PIRSF PIRSF018579 1 113 4.1E-47 T 13-10-2018 IPR009709 Protein of unknown function DUF1290 RA13_15550 6d885318ba09dc191be7b014eed9b6a0 119 Pfam PF06947 Protein of unknown function (DUF1290) 22 107 1.3E-34 T 13-10-2018 IPR009709 Protein of unknown function DUF1290 RA13_12410 32465ee90ba3c3b547df131bea4522fb 101 Pfam PF06103 Bacterial protein of unknown function (DUF948) 13 93 5.1E-8 T 13-10-2018 IPR009293 Uncharacterised protein family UPF0478 RA13_11455 e9dfae63a09fe6b00356929d1d3891d0 42 TIGRFAM TIGR03093 SASP_sspL: small, acid-soluble spore protein L 6 41 8.5E-22 T 13-10-2018 IPR017526 Small acid-soluble spore protein, SspL RA13_17750 b36adb3963fbaad28c896c7c89c9d075 270 Gene3D G3DSA:3.30.1240.10 87 192 1.5E-63 T 13-10-2018 RA13_17750 b36adb3963fbaad28c896c7c89c9d075 270 SUPERFAMILY SSF56784 4 268 1.88E-67 T 13-10-2018 IPR036412 HAD-like superfamily RA13_17750 b36adb3963fbaad28c896c7c89c9d075 270 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 7 237 6.9E-26 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RA13_17750 b36adb3963fbaad28c896c7c89c9d075 270 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 7 264 4.6E-58 T 13-10-2018 IPR000150 Cof family GO:0016787 RA13_17750 b36adb3963fbaad28c896c7c89c9d075 270 Gene3D G3DSA:3.40.50.1000 7 260 1.5E-63 T 13-10-2018 IPR023214 HAD superfamily RA13_17750 b36adb3963fbaad28c896c7c89c9d075 270 Pfam PF08282 haloacid dehalogenase-like hydrolase 8 264 1.5E-65 T 13-10-2018 RA13_21095 6a33cfa64a83c4e199a4d2ef08992d73 59 Pfam PF13076 Fur-regulated basic protein A 12 46 1.3E-15 T 13-10-2018 IPR025072 Fur-regulated basic protein A RA13_12720 c7b0556ce741719011e6b566eaae76c9 41 Pfam PF13040 Fur-regulated basic protein B 2 40 5.9E-15 T 13-10-2018 IPR025004 Transcriptional regulatory protein SenN/SenS RA13_05900 2977e064fbb00c10f94ff8d27d897985 243 PIRSF PIRSF031509 1 243 3.6E-66 T 13-10-2018 IPR016975 Cell wall-active antibiotic response protein GO:0016021 RA13_05900 2977e064fbb00c10f94ff8d27d897985 243 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 128 240 2.1E-36 T 13-10-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF RA13_17860 bab6e1fb57094ca06563825b6fc0e7dc 212 Pfam PF00805 Pentapeptide repeats (8 copies) 143 182 7.0E-10 T 13-10-2018 IPR001646 Pentapeptide repeat RA13_17860 bab6e1fb57094ca06563825b6fc0e7dc 212 Pfam PF13599 Pentapeptide repeats (9 copies) 51 113 5.5E-10 T 13-10-2018 IPR001646 Pentapeptide repeat RA13_17860 bab6e1fb57094ca06563825b6fc0e7dc 212 Gene3D G3DSA:2.160.20.100 1 212 2.6E-50 T 13-10-2018 RA13_17860 bab6e1fb57094ca06563825b6fc0e7dc 212 SUPERFAMILY SSF141571 36 211 7.32E-43 T 13-10-2018 RA13_04920 070a812eadcadb7ffa4c007facd968d2 102 ProDom PD072806 SWRA MOTILITY YVZD SWARMING MOTILITY-SWARMING 1 102 5.0E-51 T 13-10-2018 IPR035388 Swarming motility protein SwrA RA13_04920 070a812eadcadb7ffa4c007facd968d2 102 Pfam PF17423 Swarming motility protein 1 101 1.1E-51 T 13-10-2018 IPR035388 Swarming motility protein SwrA RA13_04505 89c434340afe093d0f2fa414781c9447 363 Pfam PF08757 CotH kinase protein 47 355 2.1E-90 T 13-10-2018 IPR014867 Spore coat protein CotH RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 Pfam PF07690 Major Facilitator Superfamily 13 232 3.4E-37 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 Pfam PF07690 Major Facilitator Superfamily 263 435 8.7E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 SUPERFAMILY SSF103473 3 436 1.02E-67 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 PRINTS PR01036 Tetracycline resistance protein TetB signature 12 36 2.1E-7 T 13-10-2018 RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 PRINTS PR01036 Tetracycline resistance protein TetB signature 133 157 2.1E-7 T 13-10-2018 RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 PRINTS PR01036 Tetracycline resistance protein TetB signature 199 217 2.1E-7 T 13-10-2018 RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 PRINTS PR01036 Tetracycline resistance protein TetB signature 103 123 2.1E-7 T 13-10-2018 RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 Gene3D G3DSA:1.20.1250.20 250 437 2.9E-23 T 13-10-2018 RA13_04935 8ca7b46213e55da5d943e411e45a19b5 444 Gene3D G3DSA:1.20.1720.10 9 237 5.6E-50 T 13-10-2018 RA13_06625 f08636bb7210f0ba279ac64bce333fd0 47 Pfam PF08181 DegQ (SacQ) family 2 47 7.8E-29 T 13-10-2018 IPR012554 Degradation enzyme regulation protein DegQ GO:1900192 RA13_06625 f08636bb7210f0ba279ac64bce333fd0 47 ProDom PD014716 DEGQ ENZYME DEGRADATION SACQ REGULATORY REGULATION FACTOR 14 47 2.0E-11 T 13-10-2018 IPR012554 Degradation enzyme regulation protein DegQ GO:1900192 RA13_16585 5bebad785e10669ea2ea79ca4b542892 171 Gene3D G3DSA:3.10.450.40 35 99 1.1E-10 T 13-10-2018 RA13_16585 5bebad785e10669ea2ea79ca4b542892 171 Gene3D G3DSA:3.10.450.40 101 171 1.8E-18 T 13-10-2018 RA13_16585 5bebad785e10669ea2ea79ca4b542892 171 Pfam PF03413 Peptidase propeptide and YPEB domain 43 97 6.7E-8 T 13-10-2018 IPR025711 PepSY domain RA13_16585 5bebad785e10669ea2ea79ca4b542892 171 Pfam PF03413 Peptidase propeptide and YPEB domain 110 168 4.2E-13 T 13-10-2018 IPR025711 PepSY domain RA13_20970 d756b4de1930471c0eb1966dcde926f3 152 Pfam PF17283 SprT-like zinc ribbon domain 112 147 7.4E-8 T 13-10-2018 IPR035240 SprT-like, zinc ribbon domain RA13_20970 d756b4de1930471c0eb1966dcde926f3 152 Pfam PF10263 SprT-like family 7 97 1.9E-11 T 13-10-2018 IPR006640 SprT-like RA13_20970 d756b4de1930471c0eb1966dcde926f3 152 Hamap MF_00745 Protein SprT-like. 4 148 38.728 T 13-10-2018 IPR023524 Uncharacterised protein family SprT-like RA13_20970 d756b4de1930471c0eb1966dcde926f3 152 SMART SM00731 4 148 1.5E-56 T 13-10-2018 IPR006640 SprT-like RA13_00585 77d67c0404cf9f22799e1d7371582e2f 335 Pfam PF00144 Beta-lactamase 38 312 5.1E-31 T 13-10-2018 IPR001466 Beta-lactamase-related RA13_00585 77d67c0404cf9f22799e1d7371582e2f 335 SUPERFAMILY SSF56601 3 325 3.13E-80 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RA13_00585 77d67c0404cf9f22799e1d7371582e2f 335 Gene3D G3DSA:3.40.710.10 4 331 4.0E-73 T 13-10-2018 RA13_17220 3b2390196a452a33eb8f5e7e35a00da9 136 Pfam PF10990 Protein of unknown function (DUF2809) 31 115 6.7E-28 T 13-10-2018 IPR021257 Protein of unknown function DUF2809 RA13_06730 4a56805753f29e90c2d8f42213f7ba02 185 ProDom PD108804 YUFK TRANSMEMBRANE MEMBRANE PRECURSOR SIGNAL 1 185 1.0E-48 T 13-10-2018 IPR035289 Protein of unknown function DUF5366 RA13_06730 4a56805753f29e90c2d8f42213f7ba02 185 Pfam PF17328 Family of unknown function (DUF5366) 29 184 6.0E-62 T 13-10-2018 IPR035289 Protein of unknown function DUF5366 RA13_08415 87616f25aa0f10a1b7d62e2715f3c9cc 85 Hamap MF_02013 Cell division protein ZapA [zapA]. 1 85 27.22 T 13-10-2018 IPR023688 Cell division protein ZapA, firmicutes GO:0051301 RA13_08415 87616f25aa0f10a1b7d62e2715f3c9cc 85 SUPERFAMILY SSF102829 10 84 1.57E-20 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily RA13_08415 87616f25aa0f10a1b7d62e2715f3c9cc 85 Pfam PF05164 Cell division protein ZapA 10 82 1.1E-15 T 13-10-2018 IPR007838 Cell division protein ZapA-like RA13_21360 72ff741f778a1fd4e95b2610632853bc 404 Pfam PF01566 Natural resistance-associated macrophage protein 51 371 8.9E-22 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RA13_21910 05f154bd11bdf58b32b9509b51dfe266 209 Pfam PF01810 LysE type translocator 12 203 3.8E-51 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RA13_16715 d54630f50f04d258aa68f9ac05e654e8 112 SUPERFAMILY SSF103481 6 100 7.19E-12 T 13-10-2018 RA13_16715 d54630f50f04d258aa68f9ac05e654e8 112 Pfam PF00893 Small Multidrug Resistance protein 1 89 8.3E-23 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RA13_16715 d54630f50f04d258aa68f9ac05e654e8 112 Gene3D G3DSA:1.10.3730.20 1 105 2.1E-22 T 13-10-2018 RA13_03115 aa6f03f329ef9a38ed803c9659f1f5cf 468 PIRSF PIRSF006446 1 468 1.1E-196 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RA13_03115 aa6f03f329ef9a38ed803c9659f1f5cf 468 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 442 5.4E-172 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RA13_18365 246e0f2f69b6e81499477c5dbc641372 420 Pfam PF12698 ABC-2 family transporter protein 19 392 5.5E-56 T 13-10-2018 RA13_08195 accdaef97f86a0745822379f24a32019 152 Pfam PF03477 ATP cone domain 50 136 9.0E-17 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RA13_08195 accdaef97f86a0745822379f24a32019 152 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 152 84.613 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RA13_08195 accdaef97f86a0745822379f24a32019 152 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 1.1E-75 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RA13_03815 e6a2850dae54064ed38df39bde070f37 158 SUPERFAMILY SSF51206 6 131 1.96E-11 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like RA13_03815 e6a2850dae54064ed38df39bde070f37 158 Gene3D G3DSA:2.60.120.10 8 153 6.8E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold RA13_16095 8a063da8278aefc279ed5ce38369c8be 81 ProDom PD059670 UPF0180 YKUS BA1413/GBAA1413/BAS1304 YKUS-LIKE BT9727_1277 BCE1513 GK1051 BH2667 ABC2430 BCE33L1278 4 48 2.0E-17 T 13-10-2018 IPR005370 Uncharacterised protein family UPF0180 RA13_16095 8a063da8278aefc279ed5ce38369c8be 81 Pfam PF03698 Uncharacterised protein family (UPF0180) 3 79 1.7E-29 T 13-10-2018 IPR005370 Uncharacterised protein family UPF0180 RA13_16095 8a063da8278aefc279ed5ce38369c8be 81 Hamap MF_00506 UPF0180 protein . 2 80 27.347 T 13-10-2018 IPR005370 Uncharacterised protein family UPF0180 RA13_13895 b707a5e33dfd6acc546bba7fc776b33e 93 Pfam PF12197 Bacillus cereus group antimicrobial protein 55 89 2.0E-16 T 13-10-2018 IPR020976 Antimicrobial peptide, lci RA13_08900 26bc3cf25554a020909b7d9c16f497e8 434 Gene3D G3DSA:1.20.1250.20 222 412 5.6E-20 T 13-10-2018 RA13_08900 26bc3cf25554a020909b7d9c16f497e8 434 TIGRFAM TIGR00897 2A0118: polyol permease 8 406 3.4E-204 T 13-10-2018 IPR004748 Polyol permease GO:0016021|GO:0022857|GO:0055085 RA13_08900 26bc3cf25554a020909b7d9c16f497e8 434 Pfam PF07690 Major Facilitator Superfamily 235 415 1.6E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RA13_08900 26bc3cf25554a020909b7d9c16f497e8 434 SUPERFAMILY SSF103473 19 409 2.35E-44 T 13-10-2018 IPR036259 MFS transporter superfamily RA13_08900 26bc3cf25554a020909b7d9c16f497e8 434 Gene3D G3DSA:1.20.1250.20 17 207 3.7E-11 T 13-10-2018 RA13_16940 bec298cfbfec13010443da9dac5e8e55 1393 Pfam PF01464 Transglycosylase SLT domain 1162 1286 6.8E-20 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 RA13_16940 bec298cfbfec13010443da9dac5e8e55 1393 Gene3D G3DSA:1.10.530.10 1158 1268 9.0E-6 T 13-10-2018 RA13_16940 bec298cfbfec13010443da9dac5e8e55 1393 SUPERFAMILY SSF53955 1174 1247 7.39E-11 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily RA13_14655 58b4898e25eb614ef84a44afc2bddc7f 181 Pfam PF10628 Outer spore coat protein E (CotE) 3 175 4.2E-68 T 13-10-2018 IPR018901 Spore coat protein CotE RA13_09710 394d1e42bec8313968aa2b7df201cbbb 270 Pfam PF03618 Kinase/pyrophosphorylase 6 262 6.8E-96 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RA13_09710 394d1e42bec8313968aa2b7df201cbbb 270 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 268 60.559 T 13-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein RA13_04910 e16f2f46944f869fc099aa1c5d0b0b17 296 PIRSF PIRSF003097 1 296 2.1E-96 T 13-10-2018 IPR004513 Cell division protein FtsX GO:0016021 RA13_04910 e16f2f46944f869fc099aa1c5d0b0b17 296 Pfam PF02687 FtsX-like permease family 199 294 2.7E-8 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_04910 e16f2f46944f869fc099aa1c5d0b0b17 296 Gene3D G3DSA:3.30.70.3040 48 156 8.4E-7 T 13-10-2018 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 Pfam PF14559 Tetratricopeptide repeat 163 219 2.8E-6 T 13-10-2018 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 Pfam PF14559 Tetratricopeptide repeat 32 92 3.3E-6 T 13-10-2018 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 SUPERFAMILY SSF48452 22 238 1.63E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 SUPERFAMILY SSF48452 231 322 2.05E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 Gene3D G3DSA:1.25.40.10 7 137 2.6E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 SMART SM00028 153 186 170.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 SMART SM00028 187 220 0.9 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 SMART SM00028 55 88 450.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 SMART SM00028 90 123 430.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 SMART SM00028 21 54 4.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RA13_05105 7c7e3603a467ec1af75b541a222b21f5 486 Gene3D G3DSA:1.25.40.10 148 327 9.0E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RA13_15610 a4610b3df00215eef4c1dc9570dc22e5 117 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 34 116 1.2E-23 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RA13_15610 a4610b3df00215eef4c1dc9570dc22e5 117 Hamap MF_00910 Cell division protein FtsL [ftsL]. 34 116 14.436 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RA13_15610 a4610b3df00215eef4c1dc9570dc22e5 117 Pfam PF04977 Septum formation initiator 41 101 2.9E-7 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC RA13_10800 da045175a20b4fad88c93580d484b375 174 SUPERFAMILY SSF140663 2 128 6.67E-34 T 13-10-2018 IPR023203 TTHA0068-like superfamily RA13_10800 da045175a20b4fad88c93580d484b375 174 Pfam PF03745 Domain of unknown function (DUF309) 7 66 1.8E-23 T 13-10-2018 IPR005500 Protein of unknown function DUF309 RA13_10800 da045175a20b4fad88c93580d484b375 174 Gene3D G3DSA:1.20.58.500 6 99 2.9E-16 T 13-10-2018 RA13_19155 5b3fde6080ae8f1f64a2da0ba2179c85 858 Pfam PF09586 Bacterial membrane protein YfhO 12 838 5.9E-186 T 13-10-2018 IPR018580 Uncharacterised protein family YfhO RA13_06240 81316a9c6c839d27cf3031fb55a4fda4 376 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 38 100 3.1E-6 T 13-10-2018 IPR008792 Coenzyme PQQ synthesis D RA13_19680 44350fb0b1378aa5d02cb1e8a85652c7 170 Gene3D G3DSA:3.40.630.30 2 168 1.1E-55 T 13-10-2018 RA13_19680 44350fb0b1378aa5d02cb1e8a85652c7 170 SUPERFAMILY SSF55729 3 165 3.74E-47 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_19680 44350fb0b1378aa5d02cb1e8a85652c7 170 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 1.0E-31 T 13-10-2018 IPR000182 GNAT domain RA13_17305 9fdc0d4a3e6304b9d6a0310a73fa919c 149 SUPERFAMILY SSF53254 38 144 2.36E-7 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RA13_17305 9fdc0d4a3e6304b9d6a0310a73fa919c 149 Gene3D G3DSA:3.40.50.1240 33 141 1.2E-6 T 13-10-2018 IPR029033 Histidine phosphatase superfamily RA13_13645 e9273c10e9dcedf4e925bb565afed4de 113 Gene3D G3DSA:1.10.1220.10 17 110 5.8E-11 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RA13_10120 6e45ed5ab661b18fba33c5b45ff53810 171 PIRSF PIRSF021435 1 171 4.9E-70 T 13-10-2018 IPR014198 Stage III sporulation protein AB RA13_10120 6e45ed5ab661b18fba33c5b45ff53810 171 Pfam PF09548 Stage III sporulation protein AB (spore_III_AB) 3 171 2.0E-52 T 13-10-2018 IPR014198 Stage III sporulation protein AB RA13_10120 6e45ed5ab661b18fba33c5b45ff53810 171 TIGRFAM TIGR02833 spore_III_AB: stage III sporulation protein AB 3 171 5.5E-68 T 13-10-2018 IPR014198 Stage III sporulation protein AB RA13_09090 d4e7d11bde8e4a759f001be7d7fc2d9b 353 Pfam PF01594 AI-2E family transporter 20 345 8.7E-82 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RA13_14350 e467495da0adc00f6df1e2af19884cb0 83 TIGRFAM TIGR01598 holin_phiLC3: holin, phage phi LC3 family 4 82 3.7E-24 T 13-10-2018 IPR006485 Bacteriophage holin RA13_14350 e467495da0adc00f6df1e2af19884cb0 83 Pfam PF04531 Bacteriophage holin 4 83 3.6E-28 T 13-10-2018 IPR006485 Bacteriophage holin RA13_05865 7f62112e0f91b5feae06a0953ea64832 354 Pfam PF01032 FecCD transport family 26 345 4.3E-91 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RA13_05865 7f62112e0f91b5feae06a0953ea64832 354 Gene3D G3DSA:1.10.3470.10 11 353 8.5E-100 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_05865 7f62112e0f91b5feae06a0953ea64832 354 SUPERFAMILY SSF81345 9 345 7.72E-80 T 13-10-2018 IPR037294 ABC transporter, BtuC-like RA13_05350 1657e247ba52a791cdcd087a3c3a867a 202 Pfam PF02397 Bacterial sugar transferase 4 178 6.9E-64 T 13-10-2018 IPR003362 Bacterial sugar transferase RA13_06600 25beecdfcc2df5f916f64c13cf66e68b 132 SUPERFAMILY SSF160515 4 126 4.32E-40 T 13-10-2018 RA13_06600 25beecdfcc2df5f916f64c13cf66e68b 132 Gene3D G3DSA:3.30.1330.30 1 132 1.1E-48 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_06600 25beecdfcc2df5f916f64c13cf66e68b 132 Pfam PF07997 Protein of unknown function (DUF1694) 4 118 1.6E-39 T 13-10-2018 IPR012543 Protein of unknown function DUF1694 RA13_06600 25beecdfcc2df5f916f64c13cf66e68b 132 PIRSF PIRSF034303 1 131 1.8E-40 T 13-10-2018 IPR012543 Protein of unknown function DUF1694 RA13_07070 ad1c58a6297906888c9a5c913b3841ea 193 SUPERFAMILY SSF50800 1 180 4.71E-51 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily RA13_07070 ad1c58a6297906888c9a5c913b3841ea 193 Gene3D G3DSA:2.40.33.20 1 193 9.9E-81 T 13-10-2018 RA13_18955 b95eadfb4d77c57c5afc5e285b4d49a5 60 Pfam PF13040 Fur-regulated basic protein B 21 57 5.7E-14 T 13-10-2018 IPR025004 Transcriptional regulatory protein SenN/SenS RA13_06020 469e03e93154134abe0c4dbba66090c6 46 Pfam PF14115 YuzL-like protein 3 42 2.8E-17 T 13-10-2018 IPR025625 YuzL-like protein RA13_07725 622f113798fe9ef4140479badf365a9c 92 Pfam PF14165 YtzH-like protein 3 88 2.4E-37 T 13-10-2018 IPR025547 YtzH-like protein RA13_10495 7a806b061167ff1bdcfe13428b4def9c 114 Pfam PF08863 YolD-like protein 18 111 1.6E-23 T 13-10-2018 IPR014962 YolD-like protein RA13_02675 ff370b55c7a45b597309396b46380240 328 SUPERFAMILY SSF56235 2 325 9.26E-114 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RA13_02675 ff370b55c7a45b597309396b46380240 328 Gene3D G3DSA:3.60.60.10 2 328 2.3E-135 T 13-10-2018 RA13_02675 ff370b55c7a45b597309396b46380240 328 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 2 315 1.1E-125 T 13-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal RA13_17610 696f833da1e48465e3845bcc8b05ee7e 250 Pfam PF12227 Protein of unknown function (DUF3603) 35 250 1.8E-110 T 13-10-2018 IPR020909 UPF0736 RA13_17610 696f833da1e48465e3845bcc8b05ee7e 250 Hamap MF_01860 UPF0736 protein . 1 250 50.452 T 13-10-2018 IPR020909 UPF0736 RA13_10620 613f8eb2d8ee860b4b301b301c5105ba 117 Gene3D G3DSA:3.30.750.24 2 117 7.3E-34 T 13-10-2018 IPR036513 STAS domain superfamily RA13_10620 613f8eb2d8ee860b4b301b301c5105ba 117 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 107 3.9E-39 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 RA13_10620 613f8eb2d8ee860b4b301b301c5105ba 117 TIGRFAM TIGR02886 spore_II_AA: anti-sigma F factor antagonist 5 110 1.5E-46 T 13-10-2018 IPR014237 Anti-sigma F factor antagonist GO:0006355|GO:0030435|GO:0045152 RA13_10620 613f8eb2d8ee860b4b301b301c5105ba 117 SUPERFAMILY SSF52091 4 113 1.45E-30 T 13-10-2018 IPR036513 STAS domain superfamily RA13_10620 613f8eb2d8ee860b4b301b301c5105ba 117 Pfam PF01740 STAS domain 6 109 2.0E-25 T 13-10-2018 IPR002645 STAS domain RA13_06935 ed460766035641883e6e005b53f9f0d5 388 Pfam PF01594 AI-2E family transporter 32 363 4.0E-88 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RA13_04530 8bd08f60a5c96f5b76e0ec667e3c8d38 98 Pfam PF13031 Protein of unknown function (DUF3892) 29 96 1.4E-14 T 13-10-2018 IPR024997 Protein of unknown function DUF3892 RA13_04160 1e4c0ac5dddf48e267740e1a9d7c9db6 129 Pfam PF17319 Family of unknown function (DUF5362) 13 107 2.2E-15 T 13-10-2018 IPR035287 Protein of unknown function DUF5362 RA13_04160 1e4c0ac5dddf48e267740e1a9d7c9db6 129 ProDom PD031895 YWNG MEMBRANE TRANSMEMBRANE YWNC 4 128 9.0E-25 T 13-10-2018 IPR035287 Protein of unknown function DUF5362 RA13_03750 10d799341171f2517f13d899b0d9faf9 39 Pfam PF11131 Rap-phr extracellular signalling 3 39 3.1E-22 T 13-10-2018 IPR025899 Phosphatase RapC/F inhibitor, PhrC/F RA13_18005 816c7188fffed29fb6df02c87fd2480e 145 Gene3D G3DSA:1.20.120.660 77 142 1.7E-10 T 13-10-2018 RA13_18005 816c7188fffed29fb6df02c87fd2480e 145 Gene3D G3DSA:1.20.120.660 10 76 3.3E-8 T 13-10-2018 RA13_18005 816c7188fffed29fb6df02c87fd2480e 145 Pfam PF02915 Rubrerythrin 20 138 1.2E-11 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 RA13_18005 816c7188fffed29fb6df02c87fd2480e 145 SUPERFAMILY SSF47240 16 142 2.87E-27 T 13-10-2018 IPR009078 Ferritin-like superfamily RA13_15710 2ed86dd6c93e64193f0c6c6145b22b98 133 Pfam PF14071 Putative coat protein 12 133 1.5E-43 T 13-10-2018 IPR025953 Putative coat protein YlbD RA13_20260 ba5c7fbc123e890d64b64664fec0dab1 336 Pfam PF13170 Protein of unknown function (DUF4003) 16 313 1.9E-86 T 13-10-2018 IPR025062 Protein of unknown function DUF4003 RA13_02925 f104ae8bba96a46d8fd8b50b40e36ab7 98 Pfam PF14176 YxiJ-like protein 23 92 9.5E-15 T 13-10-2018 IPR025551 Immunity protein WapI-like RA13_17400 6a381d850f85224e2d5621b56e39163c 118 Pfam PF07098 Protein of unknown function (DUF1360) 10 111 1.5E-36 T 13-10-2018 IPR010773 Mycobacterium phage PG1, Gp7 RA13_10475 5b02604e17f542edfe92d37bf637540c 93 Gene3D G3DSA:3.60.15.10 2 93 2.6E-9 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_10475 5b02604e17f542edfe92d37bf637540c 93 SUPERFAMILY SSF56281 6 84 3.67E-11 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RA13_21540 16c13d7dacb25a645753641c7265bd39 492 Pfam PF12704 MacB-like periplasmic core domain 27 289 8.1E-11 T 13-10-2018 IPR025857 MacB-like periplasmic core domain RA13_21540 16c13d7dacb25a645753641c7265bd39 492 Pfam PF02687 FtsX-like permease family 348 484 2.5E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_07395 c4a014acc1f62f3eaece3d6bb97de264 50 Pfam PF12606 Tumour necrosis factor receptor superfamily member 19 1 41 9.8E-10 T 13-10-2018 IPR022248 TNF receptor family, RELT RA13_01785 6c5479e80caad13eddf8eb7ed07bb552 81 Pfam PF04025 Domain of unknown function (DUF370) 3 72 1.6E-7 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A RA13_04230 036a17d5c8b2801647b7b3fedfd93a1a 140 Pfam PF04892 VanZ like family 8 128 6.4E-11 T 13-10-2018 IPR006976 VanZ-like RA13_19110 42aefffd762b96948cd301fbc5351336 353 Pfam PF06081 Aromatic acid exporter family member 1 1 142 4.5E-41 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 RA13_16730 d274abf9aad042d187e308220457c3a8 123 Pfam PF04134 Protein of unknown function, DUF393 6 116 1.7E-23 T 13-10-2018 IPR007263 Protein of unknown function DUF393 RA13_17430 655cc799ab94d9ca3ee1582e2f801bdb 273 Pfam PF14153 Spore coat protein CotO 114 273 9.5E-38 T 13-10-2018 IPR025439 Spore coat protein CotO RA13_17430 655cc799ab94d9ca3ee1582e2f801bdb 273 Pfam PF14153 Spore coat protein CotO 6 114 5.7E-12 T 13-10-2018 IPR025439 Spore coat protein CotO RA13_11530 dc3ae45b8acffccff580ee17596a4b61 257 Gene3D G3DSA:3.40.50.150 65 251 1.6E-38 T 13-10-2018 RA13_11530 dc3ae45b8acffccff580ee17596a4b61 257 Pfam PF04445 Putative SAM-dependent methyltransferase 44 227 1.8E-13 T 13-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 RA13_11530 dc3ae45b8acffccff580ee17596a4b61 257 SUPERFAMILY SSF53335 1 253 1.27E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_18520 64b4ff2c7426932d586463acc27f0e1f 118 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 113 1.8E-21 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RA13_18520 64b4ff2c7426932d586463acc27f0e1f 118 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 118 17.791 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RA13_18520 64b4ff2c7426932d586463acc27f0e1f 118 TIGRFAM TIGR00494 crcB: protein CrcB 5 116 1.1E-36 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RA13_03980 e81e38b18d1064d20276e575f19cff18 147 Gene3D G3DSA:3.40.630.30 2 137 8.8E-8 T 13-10-2018 RA13_03980 e81e38b18d1064d20276e575f19cff18 147 SUPERFAMILY SSF55729 4 127 5.46E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_03700 803e984cbf426816fe93c5142e1524b9 173 Pfam PF08741 YwhD family 7 167 5.6E-85 T 13-10-2018 IPR014852 Uncharacterised protein YwhD RA13_02075 9677f0ad590197d01ee6f6df779d3e06 309 Pfam PF09991 Predicted membrane protein (DUF2232) 16 300 1.6E-78 T 13-10-2018 IPR018710 Protein of unknown function DUF2232 RA13_07650 d27101dcf950f3c30473fb8c9993731b 226 Pfam PF04854 Protein of unknown function, DUF624 20 96 1.7E-29 T 13-10-2018 IPR006938 Protein of unknown function DUF624 RA13_19880 b2e08d456e4a4149d1a9d1a28e6b03e4 231 Gene3D G3DSA:3.40.50.1110 5 230 1.2E-66 T 13-10-2018 IPR036514 SGNH hydrolase superfamily RA13_19880 b2e08d456e4a4149d1a9d1a28e6b03e4 231 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 11 199 2.7E-15 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain RA13_19880 b2e08d456e4a4149d1a9d1a28e6b03e4 231 SUPERFAMILY SSF52266 6 224 2.44E-51 T 13-10-2018 RA13_18770 80c246c2860212a775df8df26907a33e 218 Pfam PF07875 Coat F domain 120 182 9.1E-17 T 13-10-2018 IPR012851 Spore coat protein CotF-like RA13_07090 f9c51cf34c2bc9c05d56c30c51f99b6a 395 TIGRFAM TIGR04383 acidic_w_LPXTA: processed acidic surface protein 3 125 4.8E-28 T 13-10-2018 IPR030832 Processed acidic surface protein RA13_07090 f9c51cf34c2bc9c05d56c30c51f99b6a 395 TIGRFAM TIGR04383 acidic_w_LPXTA: processed acidic surface protein 129 390 3.7E-66 T 13-10-2018 IPR030832 Processed acidic surface protein RA13_06205 a30c7ee2bd20048e68f860d774cb5bc7 250 Pfam PF01061 ABC-2 type transporter 6 211 2.1E-20 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RA13_06205 a30c7ee2bd20048e68f860d774cb5bc7 250 PIRSF PIRSF006648 3 247 8.7E-28 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RA13_19125 873f1df0bceeda7d8a64a73b41d3d071 86 Pfam PF14182 YgaB-like protein 3 78 5.7E-34 T 13-10-2018 IPR025572 YgaB-like protein RA13_11285 fd3c91193f291a462e83f360596757d9 320 Pfam PF10720 Protein of unknown function (DUF2515) 15 313 3.0E-124 T 13-10-2018 IPR019658 Protein of unknown function DUF2515 RA13_21885 0b4840bf4d84d6d1b7bb63adeb1c798a 197 Gene3D G3DSA:3.40.50.300 1 182 8.1E-60 T 13-10-2018 RA13_21885 0b4840bf4d84d6d1b7bb63adeb1c798a 197 Pfam PF13238 AAA domain 3 126 2.8E-8 T 13-10-2018 RA13_21885 0b4840bf4d84d6d1b7bb63adeb1c798a 197 SUPERFAMILY SSF52540 2 167 3.16E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RA13_15265 03ff6ebf741450cb50cae78cd7969d58 120 Pfam PF03780 Asp23 family, cell envelope-related function 9 116 1.6E-35 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 RA13_11880 e2735e73b3fea3b7aebb12802b0f9546 116 Gene3D G3DSA:2.70.180.10 1 116 8.1E-53 T 13-10-2018 IPR036492 Hypothetical protein YojF superfamily RA13_11880 e2735e73b3fea3b7aebb12802b0f9546 116 SUPERFAMILY SSF89442 1 116 8.76E-53 T 13-10-2018 IPR036492 Hypothetical protein YojF superfamily RA13_11880 e2735e73b3fea3b7aebb12802b0f9546 116 Pfam PF08830 Protein of unknown function (DUF1806) 4 114 1.7E-50 T 13-10-2018 IPR014934 Protein of unknown function DUF1806 RA13_01955 1047c6254126117bc6f4b83820ed28ae 189 SUPERFAMILY SSF81301 4 65 3.46E-5 T 13-10-2018 RA13_03560 42faef6f07b78797fadba92185b4c587 105 Pfam PF17261 Family of unknown function (DUF5327) 1 105 2.5E-26 T 13-10-2018 IPR035218 Protein of unknown function DUF5327 RA13_03560 42faef6f07b78797fadba92185b4c587 105 ProDom PD705231 YWDI GROUP-SPECIFIC 1 105 3.0E-39 T 13-10-2018 IPR035218 Protein of unknown function DUF5327 RA13_16895 b55021cd51704932eedab9515dc84800 651 Gene3D G3DSA:2.60.120.40 502 643 9.4E-9 T 13-10-2018 IPR008983 Tumour necrosis factor-like domain superfamily GO:0005515 RA13_16895 b55021cd51704932eedab9515dc84800 651 SUPERFAMILY SSF49842 518 624 1.13E-11 T 13-10-2018 IPR008983 Tumour necrosis factor-like domain superfamily GO:0005515 RA13_16480 a6349da4ccd9ac7b6f208e5491045bf4 386 Pfam PF12791 Anti-sigma factor N-terminus 7 54 6.0E-11 T 13-10-2018 IPR024449 Anti-sigma factor RsgI, N-terminal RA13_10855 43f45522605a70e0f7c2275dd45a0dd3 391 Pfam PF01578 Cytochrome C assembly protein 75 388 1.4E-33 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RA13_10855 43f45522605a70e0f7c2275dd45a0dd3 391 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 49 391 2.8E-76 T 13-10-2018 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 RA13_05895 2d7e94ec437568b677dbe718768f1ea9 289 Pfam PF13349 Putative adhesin 48 289 1.3E-46 T 13-10-2018 IPR025164 Putative adhesin RA13_03450 183c0a4a06383aa58bdb64d8386bb9fd 204 Gene3D G3DSA:1.20.120.80 18 201 4.9E-53 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03450 183c0a4a06383aa58bdb64d8386bb9fd 204 Pfam PF00510 Cytochrome c oxidase subunit III 25 200 8.6E-15 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03450 183c0a4a06383aa58bdb64d8386bb9fd 204 SUPERFAMILY SSF81452 18 200 1.31E-52 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RA13_03450 183c0a4a06383aa58bdb64d8386bb9fd 204 TIGRFAM TIGR02897 QoxC: cytochrome aa3 quinol oxidase, subunit III 14 201 1.3E-89 T 13-10-2018 IPR014246 Quinol oxidase subunit III GO:0015002|GO:0016021|GO:0042773 RA13_11805 8ab8d672dd3c34f429e84214d5e3d28d 88 ProDom PD710533 YODI TRANSMEMBRANE MEMBRANE 2 43 7.0E-13 T 13-10-2018 RA13_00380 e1a6e5dc91988347a06b0b3a0efa414b 162 Pfam PF09335 SNARE associated Golgi protein 29 155 2.8E-26 T 13-10-2018 IPR032816 SNARE associated Golgi protein RA13_05690 5e9ccbe890dd146de60d9b34a25fac83 202 Pfam PF03458 UPF0126 domain 5 78 5.9E-19 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 RA13_05690 5e9ccbe890dd146de60d9b34a25fac83 202 Pfam PF03458 UPF0126 domain 92 162 5.0E-18 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 RA13_13990 c2765fc8c13d2a70b3c547f53cd3c740 463 Pfam PF14072 DNA-sulfur modification-associated 139 444 3.8E-15 T 13-10-2018 IPR017642 DNA sulphur modification protein DndB RA13_07880 ff14de0b33bb12af8abc5d901a6bb4c4 132 Pfam PF07681 DoxX 5 93 1.2E-19 T 13-10-2018 IPR032808 DoxX family RA13_10540 3fd3cadb41970a80b9c659aaf91d7521 40 Pfam PF13072 Protein of unknown function (DUF3936) 1 37 5.5E-14 T 13-10-2018 IPR025177 Cell division inhibitor MciZ RA13_17420 9ca5648df677113ddf71223921e64a66 162 Pfam PF10612 Spore coat protein Z 1 143 6.8E-39 T 13-10-2018 IPR019593 Spore coat protein Z/Y RA13_12815 5018e0e83637f30666c544ac810f2f91 99 Pfam PF07875 Coat F domain 15 76 2.4E-21 T 13-10-2018 IPR012851 Spore coat protein CotF-like RA13_13665 3e890144d27f3ebdb733bb79780b7436 70 Pfam PF07866 Protein of unknown function (DUF1653) 11 67 1.2E-21 T 13-10-2018 IPR023387 DUF1653-like domain RA13_13665 3e890144d27f3ebdb733bb79780b7436 70 Gene3D G3DSA:2.30.30.320 2 70 2.8E-15 T 13-10-2018 IPR037135 DUF1653-like domain superfamily RA13_16300 daabbb7cde71fbc280841d9beee7b210 61 Pfam PF09953 Uncharacterized protein conserved in bacteria (DUF2187) 2 57 7.4E-29 T 13-10-2018 IPR018690 Protein of unknown function DUF2187 RA13_02310 aca4cea13d82c3cf8153359c4458e5dd 102 Pfam PF06124 Staphylococcal protein of unknown function (DUF960) 7 100 1.3E-22 T 13-10-2018 IPR009303 Protein of unknown function DUF960 RA13_05170 81f9798f4d84f9c1bffdbbdabb4f6575 646 PIRSF PIRSF018968 1 646 9.7E-162 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 RA13_05170 81f9798f4d84f9c1bffdbbdabb4f6575 646 Pfam PF02687 FtsX-like permease family 86 181 3.7E-6 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RA13_19830 c4820f9e31813a15cd27c402052d0a27 318 Gene3D G3DSA:1.10.3720.10 70 318 6.5E-58 T 13-10-2018 IPR035906 MetI-like superfamily RA13_19830 c4820f9e31813a15cd27c402052d0a27 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 312 1.0E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RA13_19830 c4820f9e31813a15cd27c402052d0a27 318 SUPERFAMILY SSF161098 74 302 8.11E-48 T 13-10-2018 IPR035906 MetI-like superfamily RA13_07475 aa041af93bf1ac0fc6abcfbbccc31e68 359 Pfam PF10776 Protein of unknown function (DUF2600) 20 348 4.2E-150 T 13-10-2018 IPR019712 Protein of unknown function DUF2600 RA13_20510 11e8d1c38865f51d84833c0fa6c27151 107 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 8 104 2.5E-24 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD RA13_08075 d3700ae8d071cf7373e338c82b939ccd 113 Pfam PF14034 Sporulation protein YtrH 10 108 1.7E-40 T 13-10-2018 IPR025689 Sporulation protein YtrH RA13_17415 0b838276e32b410a83d153cce6fe2908 168 Pfam PF07552 Spore Coat Protein X and V domain 110 165 2.0E-16 T 13-10-2018 IPR011428 Spore coat protein X/V GO:0030435|GO:0031160 RA13_17415 0b838276e32b410a83d153cce6fe2908 168 Pfam PF07552 Spore Coat Protein X and V domain 47 103 5.3E-17 T 13-10-2018 IPR011428 Spore coat protein X/V GO:0030435|GO:0031160 RA13_09750 164160e9c2e98bf22291a677965386e1 225 Pfam PF14181 YqfQ-like protein 79 225 3.5E-37 T 13-10-2018 IPR025571 YqfQ-like protein RA13_10660 47f983e3128e3cce7a6fa9bedc0bbf73 205 Pfam PF14097 Stage V sporulation protein AE1 6 185 7.2E-83 T 13-10-2018 IPR025914 Stage V sporulation protein AE RA13_21515 e2acdcfbd64cda1838cdc0ea2e72b6d4 35 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 7 30 5.5E-10 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_21515 e2acdcfbd64cda1838cdc0ea2e72b6d4 35 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 9 31 1.3E-9 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_14510 ac417ea4bda88c4656bdcc05162a90f4 134 Pfam PF12788 YmaF family 13 66 7.7E-9 T 13-10-2018 IPR024307 YmaF RA13_11820 01cf35911394a3602125edd2671e30b2 496 Gene3D G3DSA:1.20.1730.10 27 485 3.8E-40 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily RA13_11820 01cf35911394a3602125edd2671e30b2 496 Pfam PF00474 Sodium:solute symporter family 40 432 7.1E-23 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RA13_15060 b15f25c4b859d90e41168d6c0027756d 147 Pfam PF02050 Flagellar FliJ protein 19 142 3.6E-20 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RA13_15060 b15f25c4b859d90e41168d6c0027756d 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 4 143 2.6E-37 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 RA13_19870 1dd3802c262ec1af98097b52baef5300 208 Pfam PF04854 Protein of unknown function, DUF624 19 95 8.7E-27 T 13-10-2018 IPR006938 Protein of unknown function DUF624 RA13_01085 67cc50aed848da65358184f12cf350f3 82 Gene3D G3DSA:3.30.1330.30 1 82 3.7E-25 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_01085 67cc50aed848da65358184f12cf350f3 82 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 5 80 2.3E-15 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 RA13_01085 67cc50aed848da65358184f12cf350f3 82 PRINTS PR00884 Ribosomal protein HS6 signature 56 66 2.6E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01085 67cc50aed848da65358184f12cf350f3 82 PRINTS PR00884 Ribosomal protein HS6 signature 20 30 2.6E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01085 67cc50aed848da65358184f12cf350f3 82 PRINTS PR00884 Ribosomal protein HS6 signature 30 41 2.6E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01085 67cc50aed848da65358184f12cf350f3 82 PRINTS PR00884 Ribosomal protein HS6 signature 70 82 2.6E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 RA13_01085 67cc50aed848da65358184f12cf350f3 82 Hamap MF_00574 Putative ribosomal protein L7Ae-like. 2 82 23.881 T 13-10-2018 IPR023460 Ribosomal protein L7Ae, putative RA13_01085 67cc50aed848da65358184f12cf350f3 82 SUPERFAMILY SSF55315 4 81 1.24E-19 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like RA13_11535 2db65586d4592392fdb0378b35be68ec 204 Pfam PF14005 YpjP-like protein 70 201 7.3E-60 T 13-10-2018 IPR025616 YpjP-like protein RA13_17735 4d8420630bef38d4828893d3399d2d3b 55 Pfam PF01679 Proteolipid membrane potential modulator 2 45 4.8E-11 T 13-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 RA13_21895 8b74e4746d2f2216d953040230ac7bac 198 Pfam PF09347 Domain of unknown function (DUF1989) 7 172 5.3E-54 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 RA13_12855 c437d12607fd5d69d4577fffbedad4ee 283 SUPERFAMILY SSF55961 6 153 6.68E-6 T 13-10-2018 RA13_17090 2b16a40fe25f63979c2b546a659f5813 254 Pfam PF01925 Sulfite exporter TauE/SafE 6 253 1.3E-46 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RA13_20330 e36a54a0eb614be02163886d6afc9697 341 Pfam PF08271 TFIIB zinc-binding 5 33 6.4E-7 T 13-10-2018 IPR013137 Zinc finger, TFIIB-type RA13_20375 db01d10926a9127ac586b8e386b031ed 196 Pfam PF13796 Putative sensor 15 175 2.2E-18 T 13-10-2018 IPR025828 Putative sensor domain RA13_01100 ee4fbe4d7ee9b0d110e65e2a9dd3c029 201 SUPERFAMILY SSF53335 7 200 2.67E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RA13_01100 ee4fbe4d7ee9b0d110e65e2a9dd3c029 201 Gene3D G3DSA:3.40.50.150 6 201 8.5E-49 T 13-10-2018 RA13_01100 ee4fbe4d7ee9b0d110e65e2a9dd3c029 201 Pfam PF05175 Methyltransferase small domain 28 197 7.7E-50 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RA13_06800 3e1b1dca54da4fcf16e3f08df0062482 78 Pfam PF04070 Domain of unknown function (DUF378) 3 61 1.0E-27 T 13-10-2018 IPR007211 Protein of unknown function DUF378 RA13_21115 75df8521425cda85ce951db2528c2e66 255 Pfam PF12730 ABC-2 family transporter protein 4 182 4.1E-22 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RA13_07390 5e81fb1f2ceb3bf6f36e78d5d78d8481 150 Pfam PF13115 YtkA-like 33 113 6.2E-17 T 13-10-2018 IPR032693 YtkA-like domain RA13_14770 e093e1e161a1f9a55319f6b856196b37 77 Pfam PF14035 YlzJ-like protein 3 66 1.6E-21 T 13-10-2018 IPR025619 YlzJ-like protein RA13_05335 a15cd92b7cea97e82e51c25f7e0d32f8 356 Pfam PF04230 Polysaccharide pyruvyl transferase 50 291 7.3E-27 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase RA13_01590 c419262944dad87f16cdf5f1ac13c83f 204 Pfam PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein 8 198 4.2E-60 T 13-10-2018 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein RA13_14380 917c5132fcb776b3bfdf1f3d369eead6 110 Pfam PF08863 YolD-like protein 14 106 4.0E-22 T 13-10-2018 IPR014962 YolD-like protein RA13_02475 8ca8b9ad6827fa3c8f02a22c9d8f54c8 167 Pfam PF07252 Protein of unknown function (DUF1433) 55 131 5.5E-8 T 13-10-2018 IPR009881 Protein of unknown function DUF1433 RA13_02455 cedfeaf8f5bdd120b88e2b23a2cf7658 343 Pfam PF04230 Polysaccharide pyruvyl transferase 41 284 1.1E-30 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase RA13_20580 461448578ff6178993abdac2ca3f7f67 490 Pfam PF01391 Collagen triple helix repeat (20 copies) 8 65 1.6E-9 T 13-10-2018 IPR008160 Collagen triple helix repeat RA13_20580 461448578ff6178993abdac2ca3f7f67 490 Pfam PF01391 Collagen triple helix repeat (20 copies) 291 348 5.7E-7 T 13-10-2018 IPR008160 Collagen triple helix repeat RA13_04390 6802b680bc80a9c5ecbdc5ca46cde01f 140 Pfam PF16888 Domain of unknown function (DUF5082) 11 101 1.1E-10 T 13-10-2018 IPR031681 Protein of unknown function DUF5082 RA13_04390 6802b680bc80a9c5ecbdc5ca46cde01f 140 ProDom PD085159 YWQH COILED COIL 1 140 2.0E-44 T 13-10-2018 IPR020326 Uncharacterised protein family YwqH RA13_04480 ea6f706fbd5d1caf817d39b5fec51cdd 420 Pfam PF03611 PTS system sugar-specific permease component 8 404 1.7E-141 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 RA13_06595 31ee693ade15487012f57220058acabe 82 Pfam PF14166 YueH-like protein 2 81 6.0E-30 T 13-10-2018 IPR020260 Uncharacterised protein family YueH RA13_06595 31ee693ade15487012f57220058acabe 82 ProDom PD060056 YUEH 1 82 2.0E-23 T 13-10-2018 IPR020260 Uncharacterised protein family YueH RA13_03695 2dbc1741f7d82809f9aa4090634e936b 219 Pfam PF02163 Peptidase family M50 123 177 3.1E-9 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 RA13_15650 1faeac8119fda96d7d8f96d2302a014a 172 Pfam PF02620 Uncharacterized ACR, COG1399 56 165 8.1E-25 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD RA13_04970 2f19831b261dbbb1c7d59161876ca413 108 ProDom PD070949 MEMBRANE PROTEIN YVLA SPANNING SIMILAR SE2241 LMO0604 LMO2177 LIN2280 INTEGRAL 7 108 2.0E-21 T 13-10-2018 RA13_13445 765dfc8babe640964e15b6f8599bbd75 184 Pfam PF01944 Stage II sporulation protein M 18 170 8.2E-23 T 13-10-2018 IPR002798 Stage II sporulation protein M-like RA13_15485 9076123674713a36f3bbe300700fcd8d 92 Pfam PF02325 YGGT family 12 78 4.6E-23 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 RA13_20335 7e92c057f095f42458f468d28739a966 226 Pfam PF04012 PspA/IM30 family 4 222 2.1E-40 T 13-10-2018 IPR007157 PspA/IM30 RA13_08210 e858a3ada2f0ab3476dc6739ecfffde4 210 Pfam PF09335 SNARE associated Golgi protein 61 174 2.7E-24 T 13-10-2018 IPR032816 SNARE associated Golgi protein RA13_10125 3768f81ad738a589b451f88465d5f573 68 Pfam PF06686 Stage III sporulation protein AC/AD protein family 8 61 1.1E-15 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family RA13_10125 3768f81ad738a589b451f88465d5f573 68 TIGRFAM TIGR02848 spore_III_AC: stage III sporulation protein AC 3 66 2.7E-32 T 13-10-2018 IPR009570 Stage III sporulation protein AC RA13_21830 bdce1d1d52e9edaaa571ebdd8113bf3c 294 Pfam PF03773 Predicted permease 7 293 2.4E-91 T 13-10-2018 IPR005524 Predicted permease DUF318 RA13_19785 dcfe31dc3fafbf52d49ea64044d6ee77 214 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 13 207 2.5E-34 T 13-10-2018 IPR006214 Bax inhibitor 1-related RA13_12195 2d3f8fe31693203ea57e875e59de2aae 196 SUPERFAMILY SSF49329 45 188 3.8E-36 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RA13_12195 2d3f8fe31693203ea57e875e59de2aae 196 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 52 188 2.4E-35 T 13-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RA13_12195 2d3f8fe31693203ea57e875e59de2aae 196 Gene3D G3DSA:2.60.40.200 40 196 4.4E-57 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RA13_11920 0ef2ab8581f4f34d0bf6c9fbd89f62c8 90 ProDom PD061343 YQAH DNA SEQUENCE 1 83 1.0E-14 T 13-10-2018 IPR020278 Uncharacterized protein YqaH RA13_11920 0ef2ab8581f4f34d0bf6c9fbd89f62c8 90 Pfam PF17448 Uncharacterized protein YqaH 1 83 3.9E-21 T 13-10-2018 IPR020278 Uncharacterized protein YqaH RA13_18885 6890ecf868fe80e5e65c6fc227a0e620 210 Pfam PF13171 Protein of unknown function (DUF4004) 6 202 5.4E-76 T 13-10-2018 IPR025063 Protein of unknown function DUF4004 RA13_10675 720e03e1cc84e1c3b7fa501f70df2a41 299 Pfam PF06207 Protein of unknown function (DUF1002) 35 253 1.0E-77 T 13-10-2018 IPR009343 Protein of unknown function DUF1002 RA13_01710 8200eeb4a645543ee67cd5b53e1ecc4c 316 Pfam PF14175 YaaC-like Protein 9 308 6.5E-108 T 13-10-2018 IPR026988 YaaC-like protein RA13_18335 ae9b66c709e06ba6f1dd95a578d50b28 28 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 4 27 1.8E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_18335 ae9b66c709e06ba6f1dd95a578d50b28 28 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 3 27 5.0E-15 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like RA13_06995 36e638c7f92e055012b4251813066861 406 Pfam PF12671 Putative amidase domain 255 394 3.1E-23 T 13-10-2018 IPR024301 Putative amidase domain RA13_17405 5034c96b70e1c1436a41f11e63674a5b 128 Pfam PF07552 Spore Coat Protein X and V domain 84 127 3.5E-7 T 13-10-2018 IPR011428 Spore coat protein X/V GO:0030435|GO:0031160 RA13_17405 5034c96b70e1c1436a41f11e63674a5b 128 Pfam PF07552 Spore Coat Protein X and V domain 6 63 2.8E-17 T 13-10-2018 IPR011428 Spore coat protein X/V GO:0030435|GO:0031160 RA13_04455 b96785fbb0230b47b2ddb1cf376c371a 197 Pfam PF02417 Chromate transporter 9 173 2.6E-34 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 RA13_21125 3f53b9774c06201db21540585099de00 341 Pfam PF01594 AI-2E family transporter 16 334 3.6E-61 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like RA13_03965 faf17db01672cbfeb0e12551333ecbbf 95 Pfam PF17247 Family of unknown function (DUF5316) 30 94 7.8E-15 T 13-10-2018 IPR035167 Protein of unknown function DUF5316 RA13_00160 c0eda79b61d537fcb66bed7b5711cc66 94 Gene3D G3DSA:3.40.50.40 65 94 1.9E-6 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RA13_07355 e4fd8d62f7b27ed4351c60cce6e5afcc 346 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 8 335 3.2E-35 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RA13_15045 20fe94ae459c829ee8b4a43d775f154b 142 Pfam PF03963 Flagellar hook capping protein - N-terminal region 11 74 1.6E-23 T 13-10-2018 IPR005648 Flagellar hook capping protein RA13_13315 f9e5bcb7d5adad414a4bd966d0b789ee 110 Pfam PF08863 YolD-like protein 14 106 1.8E-23 T 13-10-2018 IPR014962 YolD-like protein RA13_12310 d711c9d6889d310c617cf424771d2b68 166 SUPERFAMILY SSF55729 101 153 2.55E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase RA13_18815 8b3d2b34a483c94b16b4f86c905d99d2 316 Pfam PF12679 ABC-2 family transporter protein 3 314 1.4E-15 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 RA13_18375 cbce06514520a2598630b25ec86a772b 61 Pfam PF14120 YhzD-like protein 1 61 1.7E-28 T 13-10-2018 IPR025544 YhzD-like protein RA13_00625 c97fd811330b367dc469c60dff4c8e87 120 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 5 112 1.1E-38 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 RA13_06525 a746b7e7a55d149b8f7c16bec776f4b2 225 Pfam PF10042 Uncharacterized conserved protein (DUF2278) 1 212 2.0E-70 T 13-10-2018 IPR019268 Protein of unknown function DUF2278 RA13_16140 060ae09f20b0f5dc7b40ff083a2e8024 172 Pfam PF04308 Ribonuclease H-like 19 172 2.2E-53 T 13-10-2018 IPR007405 Bacteriophage KVP40, Orf299 RA13_20110 065e2e8baf5cda714186a3a9308c7a60 76 Pfam PF11127 Protein of unknown function (DUF2892) 2 69 3.3E-11 T 13-10-2018 IPR021309 Protein of unknown function DUF2892 RA13_21755 aa9e90463e36ea02432a22abb29af02a 151 Pfam PF06271 RDD family 6 128 1.6E-16 T 13-10-2018 IPR010432 RDD RA13_06330 8546110185e5b4f178557ec68e8b27e6 212 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 12 179 7.4E-28 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like RA13_20405 2258f3a549baf479b823dd7f954267a7 63 ProDom PD053380 YDIK LIPOPROTEIN TRANSMEMBRANE MEMBRANE PRECURSOR PALMITATE SIGNAL 1 63 7.0E-27 T 13-10-2018 RA13_20405 2258f3a549baf479b823dd7f954267a7 63 Pfam PF14146 Domain of unknown function (DUF4305) 17 52 6.8E-13 T 13-10-2018 IPR025426 Protein of unknown function DUF4305 RA13_12050 0fb6683f28be7acd8c0d8075d4593777 181 Pfam PF01391 Collagen triple helix repeat (20 copies) 43 91 4.6E-9 T 13-10-2018 IPR008160 Collagen triple helix repeat RA13_12050 0fb6683f28be7acd8c0d8075d4593777 181 Pfam PF01391 Collagen triple helix repeat (20 copies) 61 114 5.2E-10 T 13-10-2018 IPR008160 Collagen triple helix repeat RA13_05295 0f127b295432c73bc1964f76ec0a5884 242 Pfam PF02706 Chain length determinant protein 4 93 1.2E-18 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 RA13_04745 7bd8c5aa16748d651d8bdaf35a0c64a5 489 Pfam PF04932 O-Antigen ligase 262 410 3.5E-15 T 13-10-2018 IPR007016 O-antigen ligase-related RA13_01625 91fd6cb7a1cbfd755dd00d00801a14aa 87 Pfam PF07441 SigmaK-factor processing regulatory protein BofA 12 85 2.1E-19 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA RA13_01625 91fd6cb7a1cbfd755dd00d00801a14aa 87 TIGRFAM TIGR02862 spore_BofA: pro-sigmaK processing inhibitor BofA 5 86 1.4E-29 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA RA13_19450 3e904d6ad063e2375bcae63eabe2538f 264 Pfam PF14167 YfkD-like protein 33 264 1.6E-117 T 13-10-2018 IPR025548 YfkD-like protein RA13_05325 2a3ae762d398df83c40c11d34f4bae76 367 Pfam PF14897 EpsG family 37 362 7.3E-53 T 13-10-2018 RA13_02510 48bf0257a109dfa46a15a0aa49caf25c 139 Pfam PF17369 Family of unknown function (DUF5391) 2 131 6.7E-51 T 13-10-2018 IPR020204 Uncharacterised protein family, YxaJ RA13_02510 48bf0257a109dfa46a15a0aa49caf25c 139 ProDom PD086672 YXAJ MEMBRANE TRANSMEMBRANE 8 130 4.0E-28 T 13-10-2018 IPR020204 Uncharacterised protein family, YxaJ RA13_02240 7187020889cea8d05c2c7991a7aabc1b 249 SUPERFAMILY SSF54001 119 245 3.6E-15 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RA13_17225 616897357a87a2beb3fe99b4dc1752d3 157 Pfam PF10901 Protein of unknown function (DUF2690) 31 140 5.0E-33 T 13-10-2018 IPR021224 Protein of unknown function DUF2690 RA13_18435 cc53aac01612b693d82275b4b2948359 363 SUPERFAMILY SSF56059 107 331 6.04E-20 T 13-10-2018 RA13_18435 cc53aac01612b693d82275b4b2948359 363 Pfam PF14398 YheC/D like ATP-grasp 98 344 5.1E-64 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D RA13_00520 09c3f724c33ee5dc34610081a559d56b 230 Pfam PF04172 LrgB-like family 14 225 1.9E-69 T 13-10-2018 IPR007300 CidB/LrgB family RA13_02750 ecc8d0f0a4c856005f82eb7346dc52ec 62 Gene3D G3DSA:3.30.360.10 1 55 9.1E-7 T 13-10-2018 RA13_13885 ce6d3ed41a9065fe7a78632343423e69 124 Pfam PF14037 YoqO-like protein 7 115 4.6E-19 T 13-10-2018 IPR025621 YoqO-like protein RA13_08200 0de1ffc94ef7cd44ff55a32563944d51 472 Pfam PF07261 Replication initiation and membrane attachment 329 394 3.9E-12 T 13-10-2018 IPR006343 DnaD domain RA13_11575 b4b73948134e79fe9a13e0b7f1ca3d89 83 Pfam PF10751 Protein of unknown function (DUF2535) 1 83 9.2E-39 T 13-10-2018 IPR019687 Protein of unknown function DUF2535 RA13_21155 931c768d260daf4f47bd67288972c4ce 120 Pfam PF16291 Domain of unknown function (DUF4937 2 92 2.5E-33 T 13-10-2018 IPR032555 Domain of unknown function DUF4937 RA13_21155 931c768d260daf4f47bd67288972c4ce 120 SUPERFAMILY SSF54909 1 92 3.08E-11 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel RA13_19150 7a8451f8944bdefe11f370e4ee5c33ae 327 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 162 3.5E-25 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase RA13_10850 a3eb59737356836eb0592a002a7e6573 542 Pfam PF05140 ResB-like family 63 426 8.9E-76 T 13-10-2018 IPR007816 ResB-like domain RA13_10850 a3eb59737356836eb0592a002a7e6573 542 Pfam PF05140 ResB-like family 437 519 4.9E-19 T 13-10-2018 IPR007816 ResB-like domain RA13_17385 ba1dafb5e5438afa5952133f3260a0e7 84 Pfam PF14069 Stage VI sporulation protein F 6 76 8.7E-27 T 13-10-2018 IPR025942 Stage VI sporulation protein F RA13_15805 74e671c9a47eb7f18a0a025a3b08dcb8 105 Pfam PF14036 YlaH-like protein 20 94 2.0E-31 T 13-10-2018 IPR025620 YlaH-like protein RA13_09065 69a9656abae8c04c09de9b245064cfc7 43 Pfam PF13056 Protein of unknown function (DUF3918) 1 43 8.7E-20 T 13-10-2018 IPR025029 Protein of unknown function DUF3918 RA13_11825 e960666e7a47bcbd1a23507b109434b8 66 Pfam PF11755 Protein of unknown function (DUF3311) 10 62 1.6E-14 T 13-10-2018 IPR021741 Protein of unknown function DUF3311 RA13_06735 abde081bc1616d780a24b69bcea9b435 137 Pfam PF04134 Protein of unknown function, DUF393 11 120 7.9E-35 T 13-10-2018 IPR007263 Protein of unknown function DUF393 RA13_15825 f6d77b669cb56ada7efb8114e9539bbd 105 Pfam PF13490 Putative zinc-finger 14 44 1.5E-6 T 13-10-2018 IPR027383 Putative zinc-finger RA13_12320 935eee970df514a4a03f484e9bb41d48 178 Pfam PF04238 Protein of unknown function (DUF420) 46 174 3.6E-46 T 13-10-2018 IPR007352 Protein of unknown function DUF420 RA13_17965 42ea0c26a1467fd9e55dd4c8a7273b7b 58 PIRSF PIRSF037666 1 58 7.5E-34 T 13-10-2018 IPR017257 Spore germination protein GerPD, predicted RA13_17255 09420a94d707e35bb53d74a5af933444 141 Pfam PF14040 Deoxyribonuclease NucA/NucB 44 134 7.7E-12 T 13-10-2018 IPR029476 Deoxyribonuclease NucA/NucB RA13_18905 e8222f5dc003006faf7067419329e1d5 207 SUPERFAMILY SSF56037 54 202 4.97E-12 T 13-10-2018 RA13_18320 a84065e13e3d3a236cdc14e6fd16dd9b 172 Pfam PF11667 Putative zincin peptidase 59 157 1.1E-18 T 13-10-2018 IPR021683 Putative zincin peptidase