locus-tag class description BBEV_0003 PF00712 DNA polymerase III beta subunit, N-terminal domain BBEV_0003 PF02768 DNA polymerase III beta subunit, C-terminal domain BBEV_0003 PF02767 DNA polymerase III beta subunit, central domain BBEV_0004 PF00308 Bacterial dnaA protein BBEV_0004 PF08299 Bacterial dnaA protein helix-turn-helix BBEV_0004 PF11638 DnaA N-terminal domain BBEV_0005 PF00825 Ribonuclease P BBEV_0006 PF01809 Putative membrane protein insertion efficiency factor BBEV_0007 PF02096 60Kd inner membrane protein BBEV_0008 PF14804 Jag N-terminus BBEV_0008 PF01424 R3H domain BBEV_0009 PF12631 MnmE helical domain BBEV_0009 PF10396 GTP-binding protein TrmE N-terminus BBEV_0009 PF01926 50S ribosome-binding GTPase BBEV_0010 PF13932 GidA associated domain BBEV_0010 PF01134 Glucose inhibited division protein A BBEV_0011 PF02527 rRNA small subunit methyltransferase G BBEV_0012 PF17762 HTH domain found in ParB protein BBEV_0012 PF02195 ParB-like nuclease domain BBEV_0013 PF13614 AAA domain BBEV_0015 PF02195 ParB-like nuclease domain BBEV_0015 PF17762 HTH domain found in ParB protein BBEV_0016 PF00266 Aminotransferase class-V BBEV_0017 PF04474 Protein of unknown function (DUF554) BBEV_0018 PF06107 Bacterial protein of unknown function (DUF951) BBEV_0019 PF06071 Protein of unknown function (DUF933) BBEV_0019 PF01926 50S ribosome-binding GTPase BBEV_0020 PF01250 Ribosomal protein S6 BBEV_0021 PF00436 Single-strand binding protein family BBEV_0022 PF01084 Ribosomal protein S18 BBEV_0023 PF09991 Predicted membrane protein (DUF2232) BBEV_0024 PF01368 DHH family BBEV_0024 PF02272 DHHA1 domain BBEV_0025 PF01281 Ribosomal protein L9, N-terminal domain BBEV_0025 PF03948 Ribosomal protein L9, C-terminal domain BBEV_0026 PF03796 DnaB-like helicase C terminal domain BBEV_0026 PF00772 DnaB-like helicase N terminal domain BBEV_0027 PF00709 Adenylosuccinate synthetase BBEV_0035 PF00072 Response regulator receiver domain BBEV_0035 PF00486 Transcriptional regulatory protein, C terminal BBEV_0036 PF13426 PAS domain BBEV_0036 PF00512 His Kinase A (phospho-acceptor) domain BBEV_0036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0036 PF00672 HAMP domain BBEV_0037 PF07435 YycH protein BBEV_0038 PF09648 YycH protein BBEV_0039 PF00753 Metallo-beta-lactamase superfamily BBEV_0040 PF13180 PDZ domain BBEV_0042 PF02590 Predicted SPOUT methyltransferase BBEV_0043 PF02254 TrkA-N domain BBEV_0043 PF07885 Ion channel BBEV_0045 PF16363 GDP-mannose 4,6 dehydratase BBEV_0047 PF00849 RNA pseudouridylate synthase BBEV_0047 PF01479 S4 domain BBEV_0048 PF06039 Malate:quinone oxidoreductase (Mqo) BBEV_0049 PF00360 Phytochrome region BBEV_0049 PF00563 EAL domain BBEV_0049 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0049 PF01590 GAF domain BBEV_0051 PF00005 ABC transporter BBEV_0052 PF01061 ABC-2 type transporter BBEV_0053 PF00487 Fatty acid desaturase BBEV_0054 PF07730 Histidine kinase BBEV_0055 PF00072 Response regulator receiver domain BBEV_0055 PF00196 Bacterial regulatory proteins, luxR family BBEV_0056 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0056 PF00072 Response regulator receiver domain BBEV_0057 PF02525 Flavodoxin-like fold BBEV_0058 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_0058 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BBEV_0060 PF00581 Rhodanese-like domain BBEV_0061 PF09335 SNARE associated Golgi protein BBEV_0062 PF13416 Bacterial extracellular solute-binding protein BBEV_0064 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0065 PF00005 ABC transporter BBEV_0065 PF08402 TOBE domain BBEV_0067 PF00005 ABC transporter BBEV_0067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_0068 PF00005 ABC transporter BBEV_0068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_0071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BBEV_0072 PF00696 Amino acid kinase family BBEV_0072 PF13840 ACT domain BBEV_0073 PF09154 Domain of unknown function (DUF1939) BBEV_0073 PF00128 Alpha amylase, catalytic domain BBEV_0074 PF04204 Homoserine O-succinyltransferase BBEV_0076 PF08544 GHMP kinases C terminal BBEV_0076 PF00288 GHMP kinases N terminal domain BBEV_0077 PF00291 Pyridoxal-phosphate dependent enzyme BBEV_0080 PF00535 Glycosyl transferase family 2 BBEV_0082 PF02096 60Kd inner membrane protein BBEV_0083 PF10672 S-adenosylmethionine-dependent methyltransferase BBEV_0083 PF17785 PUA-like domain BBEV_0084 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BBEV_0084 PF00749 tRNA synthetases class I (E and Q), catalytic domain BBEV_0086 PF01177 Asp/Glu/Hydantoin racemase BBEV_0089 PF00106 short chain dehydrogenase BBEV_0090 PF00485 Phosphoribulokinase / Uridine kinase family BBEV_0091 PF01042 Endoribonuclease L-PSP BBEV_0093 PF02073 Thermophilic metalloprotease (M29) BBEV_0094 PF00884 Sulfatase BBEV_0096 PF02585 GlcNAc-PI de-N-acetylase BBEV_0098 PF08830 Protein of unknown function (DUF1806) BBEV_0099 PF00672 HAMP domain BBEV_0099 PF02743 Cache domain BBEV_0099 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_0101 PF00294 pfkB family carbohydrate kinase BBEV_0102 PF08244 Glycosyl hydrolases family 32 C terminal BBEV_0102 PF00251 Glycosyl hydrolases family 32 N-terminal domain BBEV_0103 PF00072 Response regulator receiver domain BBEV_0104 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BBEV_0104 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BBEV_0105 PF00512 His Kinase A (phospho-acceptor) domain BBEV_0105 PF00989 PAS fold BBEV_0105 PF13188 PAS domain BBEV_0105 PF13426 PAS domain BBEV_0105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0106 PF13460 NAD(P)H-binding BBEV_0109 PF00583 Acetyltransferase (GNAT) family BBEV_0111 PF00378 Enoyl-CoA hydratase/isomerase BBEV_0112 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_0112 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BBEV_0113 PF01515 Phosphate acetyl/butaryl transferase BBEV_0114 PF02592 Putative vitamin uptake transporter BBEV_0116 PF03099 Biotin/lipoate A/B protein ligase family BBEV_0117 PF07293 Protein of unknown function (DUF1450) BBEV_0118 PF01966 HD domain BBEV_0119 PF01361 Tautomerase enzyme BBEV_0120 PF08741 YwhD family BBEV_0123 PF00491 Arginase family BBEV_0125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BBEV_0126 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0127 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0127 PF12911 N-terminal TM domain of oligopeptide transport permease C BBEV_0128 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_0128 PF00005 ABC transporter BBEV_0129 PF00005 ABC transporter BBEV_0129 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_0130 PF01381 Helix-turn-helix BBEV_0132 PF05746 DALR anticodon binding domain BBEV_0132 PF00750 tRNA synthetases class I (R) BBEV_0132 PF03485 Arginyl tRNA synthetase N terminal domain BBEV_0133 PF00672 HAMP domain BBEV_0133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_0133 PF17202 Single cache domain 3 BBEV_0134 PF08220 DeoR-like helix-turn-helix domain BBEV_0134 PF00455 DeoR C terminal sensor domain BBEV_0135 PF07005 Sugar-binding N-terminal domain BBEV_0135 PF17042 Nucleotide-binding C-terminal domain BBEV_0136 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BBEV_0137 PF03480 Bacterial extracellular solute-binding protein, family 7 BBEV_0139 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BBEV_0140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BBEV_0141 PF00392 Bacterial regulatory proteins, gntR family BBEV_0142 PF00005 ABC transporter BBEV_0144 PF00664 ABC transporter transmembrane region BBEV_0144 PF00005 ABC transporter BBEV_0147 PF17284 Spermidine synthase tetramerisation domain BBEV_0149 PF02754 Cysteine-rich domain BBEV_0149 PF13183 4Fe-4S dicluster domain BBEV_0150 PF00108 Thiolase, N-terminal domain BBEV_0150 PF02803 Thiolase, C-terminal domain BBEV_0151 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BBEV_0151 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BBEV_0152 PF02770 Acyl-CoA dehydrogenase, middle domain BBEV_0152 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BBEV_0152 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BBEV_0153 PF02770 Acyl-CoA dehydrogenase, middle domain BBEV_0153 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BBEV_0153 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BBEV_0155 PF01642 Methylmalonyl-CoA mutase BBEV_0155 PF02310 B12 binding domain BBEV_0156 PF05066 HB1, ASXL, restriction endonuclease HTH domain BBEV_0157 PF06418 CTP synthase N-terminus BBEV_0157 PF00117 Glutamine amidotransferase class-I BBEV_0159 PF00072 Response regulator receiver domain BBEV_0160 PF01116 Fructose-bisphosphate aldolase class-II BBEV_0161 PF00923 Transaldolase/Fructose-6-phosphate aldolase BBEV_0162 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BBEV_0163 PF07498 Rho termination factor, N-terminal domain BBEV_0163 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BBEV_0163 PF07497 Rho termination factor, RNA-binding domain BBEV_0164 PF01197 Ribosomal protein L31 BBEV_0165 PF00265 Thymidine kinase BBEV_0166 PF02743 Cache domain BBEV_0166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_0166 PF00672 HAMP domain BBEV_0167 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_0167 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BBEV_0168 PF00472 RF-1 domain BBEV_0168 PF03462 PCRF domain BBEV_0169 PF13847 Methyltransferase domain BBEV_0169 PF17827 PrmC N-terminal domain BBEV_0170 PF01300 Telomere recombination BBEV_0170 PF03481 Putative GTP-binding controlling metal-binding BBEV_0172 PF01451 Low molecular weight phosphotyrosine protein phosphatase BBEV_0172 PF01451 Low molecular weight phosphotyrosine protein phosphatase BBEV_0173 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_0173 PF00672 HAMP domain BBEV_0173 PF12729 Four helix bundle sensory module for signal transduction BBEV_0174 PF02502 Ribose/Galactose Isomerase BBEV_0175 PF04260 Protein of unknown function (DUF436) BBEV_0176 PF03707 Bacterial signalling protein N terminal repeat BBEV_0176 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0176 PF00563 EAL domain BBEV_0177 PF00464 Serine hydroxymethyltransferase BBEV_0179 PF02350 UDP-N-acetylglucosamine 2-epimerase BBEV_0182 PF00119 ATP synthase A chain BBEV_0184 PF00430 ATP synthase B/B' CF(0) BBEV_0185 PF00213 ATP synthase delta (OSCP) subunit BBEV_0186 PF02874 ATP synthase alpha/beta family, beta-barrel domain BBEV_0186 PF00306 ATP synthase alpha/beta chain, C terminal domain BBEV_0186 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BBEV_0188 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BBEV_0188 PF02874 ATP synthase alpha/beta family, beta-barrel domain BBEV_0189 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BBEV_0189 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BBEV_0191 PF13407 Periplasmic binding protein domain BBEV_0192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0192 PF00672 HAMP domain BBEV_0192 PF06580 Histidine kinase BBEV_0192 PF02743 Cache domain BBEV_0193 PF12833 Helix-turn-helix domain BBEV_0193 PF01497 Periplasmic binding protein BBEV_0194 PF13407 Periplasmic binding protein domain BBEV_0195 PF00005 ABC transporter BBEV_0196 PF02653 Branched-chain amino acid transport system / permease component BBEV_0197 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BBEV_0198 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BBEV_0199 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BBEV_0200 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BBEV_0201 PF00146 NADH dehydrogenase BBEV_0202 PF12838 4Fe-4S dicluster domain BBEV_0203 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BBEV_0204 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BBEV_0205 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BBEV_0205 PF00361 Proton-conducting membrane transporter BBEV_0205 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BBEV_0206 PF00361 Proton-conducting membrane transporter BBEV_0206 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BBEV_0207 PF00361 Proton-conducting membrane transporter BBEV_0210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BBEV_0212 PF00460 Flagella basal body rod protein BBEV_0212 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BBEV_0213 PF00460 Flagella basal body rod protein BBEV_0213 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BBEV_0216 PF07977 FabA-like domain BBEV_0221 PF12833 Helix-turn-helix domain BBEV_0222 PF14667 Polysaccharide biosynthesis C-terminal domain BBEV_0222 PF01943 Polysaccharide biosynthesis protein BBEV_0224 PF00877 NlpC/P60 family BBEV_0225 PF03816 Cell envelope-related transcriptional attenuator domain BBEV_0226 PF00877 NlpC/P60 family BBEV_0226 PF01476 LysM domain BBEV_0227 PF14102 Capsule biosynthesis CapC BBEV_0228 PF09587 Bacterial capsule synthesis protein PGA_cap BBEV_0232 PF01979 Amidohydrolase family BBEV_0233 PF00881 Nitroreductase family BBEV_0238 PF13361 UvrD-like helicase C-terminal domain BBEV_0238 PF00570 HRDC domain BBEV_0238 PF00580 UvrD/REP helicase N-terminal domain BBEV_0239 PF00356 Bacterial regulatory proteins, lacI family BBEV_0240 PF00294 pfkB family carbohydrate kinase BBEV_0241 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BBEV_0242 PF01380 SIS domain BBEV_0243 PF01081 KDPG and KHG aldolase BBEV_0246 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BBEV_0250 PF13807 G-rich domain on putative tyrosine kinase BBEV_0250 PF02706 Chain length determinant protein BBEV_0251 PF13614 AAA domain BBEV_0253 PF00483 Nucleotidyl transferase BBEV_0256 PF02397 Bacterial sugar transferase BBEV_0257 PF01370 NAD dependent epimerase/dehydratase family BBEV_0258 PF00534 Glycosyl transferases group 1 BBEV_0259 PF00535 Glycosyl transferase family 2 BBEV_0262 PF00483 Nucleotidyl transferase BBEV_0262 PF01050 Mannose-6-phosphate isomerase BBEV_0263 PF01370 NAD dependent epimerase/dehydratase family BBEV_0264 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BBEV_0264 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BBEV_0264 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BBEV_0266 PF00535 Glycosyl transferase family 2 BBEV_0266 PF01501 Glycosyl transferase family 8 BBEV_0268 PF00535 Glycosyl transferase family 2 BBEV_0270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BBEV_0271 PF00483 Nucleotidyl transferase BBEV_0272 PF16363 GDP-mannose 4,6 dehydratase BBEV_0275 PF13302 Acetyltransferase (GNAT) domain BBEV_0278 PF01695 IstB-like ATP binding protein BBEV_0281 PF03816 Cell envelope-related transcriptional attenuator domain BBEV_0282 PF02719 Polysaccharide biosynthesis protein BBEV_0284 PF13614 AAA domain BBEV_0285 PF00188 Cysteine-rich secretory protein family BBEV_0286 PF04122 Putative cell wall binding repeat 2 BBEV_0286 PF08486 Stage II sporulation protein BBEV_0290 PF00082 Subtilase family BBEV_0291 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BBEV_0291 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BBEV_0291 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BBEV_0295 PF00535 Glycosyl transferase family 2 BBEV_0298 PF00005 ABC transporter BBEV_0302 PF00953 Glycosyl transferase family 4 BBEV_0303 PF08486 Stage II sporulation protein BBEV_0304 PF03816 Cell envelope-related transcriptional attenuator domain BBEV_0305 PF04122 Putative cell wall binding repeat 2 BBEV_0305 PF01520 N-acetylmuramoyl-L-alanine amidase BBEV_0306 PF07683 Cobalamin synthesis protein cobW C-terminal domain BBEV_0306 PF02492 CobW/HypB/UreG, nucleotide-binding domain BBEV_0308 PF01966 HD domain BBEV_0308 PF00072 Response regulator receiver domain BBEV_0314 PF00722 Glycosyl hydrolases family 16 BBEV_0318 PF17866 AAA lid domain BBEV_0318 PF00004 ATPase family associated with various cellular activities (AAA) BBEV_0319 PF17999 Pullulanase N1-terminal domain BBEV_0319 PF00128 Alpha amylase, catalytic domain BBEV_0319 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BBEV_0320 PF02872 5'-nucleotidase, C-terminal domain BBEV_0320 PF00149 Calcineurin-like phosphoesterase BBEV_0324 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BBEV_0328 PF01381 Helix-turn-helix BBEV_0334 PF00384 Molybdopterin oxidoreductase BBEV_0334 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_0334 PF01568 Molydopterin dinucleotide binding domain BBEV_0337 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_0337 PF00384 Molybdopterin oxidoreductase BBEV_0337 PF01568 Molydopterin dinucleotide binding domain BBEV_0338 PF12800 4Fe-4S binding domain BBEV_0338 PF13247 4Fe-4S dicluster domain BBEV_0348 PF00877 NlpC/P60 family BBEV_0349 PF13416 Bacterial extracellular solute-binding protein BBEV_0351 PF09587 Bacterial capsule synthesis protein PGA_cap BBEV_0352 PF14102 Capsule biosynthesis CapC BBEV_0353 PF08245 Mur ligase middle domain BBEV_0354 PF07690 Major Facilitator Superfamily BBEV_0355 PF00480 ROK family BBEV_0357 PF13932 GidA associated domain BBEV_0357 PF01134 Glucose inhibited division protein A BBEV_0358 PF01047 MarR family BBEV_0358 PF00480 ROK family BBEV_0360 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0361 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0363 PF17853 GGDEF-like domain BBEV_0363 PF12833 Helix-turn-helix domain BBEV_0365 PF01915 Glycosyl hydrolase family 3 C-terminal domain BBEV_0365 PF00933 Glycosyl hydrolase family 3 N terminal domain BBEV_0369 PF01627 Hpt domain BBEV_0369 PF00672 HAMP domain BBEV_0369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0369 PF00512 His Kinase A (phospho-acceptor) domain BBEV_0369 PF17149 Periplasmic sensor domain found in signal transduction proteins BBEV_0369 PF00072 Response regulator receiver domain BBEV_0370 PF00486 Transcriptional regulatory protein, C terminal BBEV_0370 PF00072 Response regulator receiver domain BBEV_0371 PF00722 Glycosyl hydrolases family 16 BBEV_0372 PF13180 PDZ domain BBEV_0373 PF00877 NlpC/P60 family BBEV_0373 PF01476 LysM domain BBEV_0374 PF11741 AMIN domain BBEV_0374 PF01520 N-acetylmuramoyl-L-alanine amidase BBEV_0377 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BBEV_0379 PF03611 PTS system sugar-specific permease component BBEV_0381 PF03475 3-alpha domain BBEV_0381 PF03473 MOSC domain BBEV_0383 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BBEV_0385 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BBEV_0385 PF03480 Bacterial extracellular solute-binding protein, family 7 BBEV_0386 PF07687 Peptidase dimerisation domain BBEV_0386 PF01546 Peptidase family M20/M25/M40 BBEV_0387 PF17853 GGDEF-like domain BBEV_0387 PF13556 PucR C-terminal helix-turn-helix domain BBEV_0388 PF01804 Penicillin amidase BBEV_0389 PF00356 Bacterial regulatory proteins, lacI family BBEV_0390 PF00294 pfkB family carbohydrate kinase BBEV_0391 PF05025 RbsD / FucU transport protein family BBEV_0392 PF02653 Branched-chain amino acid transport system / permease component BBEV_0393 PF13407 Periplasmic binding protein domain BBEV_0399 PF17999 Pullulanase N1-terminal domain BBEV_0399 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BBEV_0399 PF00128 Alpha amylase, catalytic domain BBEV_0400 PF00563 EAL domain BBEV_0400 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0400 PF03707 Bacterial signalling protein N terminal repeat BBEV_0408 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BBEV_0409 PF00455 DeoR C terminal sensor domain BBEV_0409 PF08220 DeoR-like helix-turn-helix domain BBEV_0410 PF00294 pfkB family carbohydrate kinase BBEV_0411 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BBEV_0411 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BBEV_0413 PF07694 5TMR of 5TMR-LYT BBEV_0413 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0414 PF00486 Transcriptional regulatory protein, C terminal BBEV_0414 PF00072 Response regulator receiver domain BBEV_0415 PF13426 PAS domain BBEV_0415 PF00512 His Kinase A (phospho-acceptor) domain BBEV_0415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0415 PF00672 HAMP domain BBEV_0416 PF03737 Aldolase/RraA BBEV_0418 PF00005 ABC transporter BBEV_0419 PF12679 ABC-2 family transporter protein BBEV_0421 PF02733 Dak1 domain BBEV_0422 PF02734 DAK2 domain BBEV_0423 PF03610 PTS system fructose IIA component BBEV_0425 PF02733 Dak1 domain BBEV_0428 PF00271 Helicase conserved C-terminal domain BBEV_0428 PF00176 SNF2 family N-terminal domain BBEV_0428 PF12419 SNF2 Helicase protein BBEV_0430 PF00989 PAS fold BBEV_0430 PF02954 Bacterial regulatory protein, Fis family BBEV_0430 PF00158 Sigma-54 interaction domain BBEV_0431 PF01979 Amidohydrolase family BBEV_0432 PF00005 ABC transporter BBEV_0432 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_0433 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_0433 PF00005 ABC transporter BBEV_0434 PF12911 N-terminal TM domain of oligopeptide transport permease C BBEV_0434 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0435 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0436 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BBEV_0438 PF03773 Predicted permease BBEV_0441 PF00391 PEP-utilising enzyme, mobile domain BBEV_0441 PF02896 PEP-utilising enzyme, TIM barrel domain BBEV_0441 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BBEV_0442 PF03618 Kinase/pyrophosphorylase BBEV_0443 PF03069 Acetamidase/Formamidase family BBEV_0444 PF03601 Conserved hypothetical protein 698 BBEV_0445 PF00330 Aconitase family (aconitate hydratase) BBEV_0446 PF03466 LysR substrate binding domain BBEV_0446 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BBEV_0447 PF00392 Bacterial regulatory proteins, gntR family BBEV_0447 PF07729 FCD domain BBEV_0449 PF04303 PrpF protein BBEV_0452 PF01970 Tripartite tricarboxylate transporter TctA family BBEV_0457 PF14537 Cytochrome c3 BBEV_0457 PF00890 FAD binding domain BBEV_0458 PF02627 Carboxymuconolactone decarboxylase family BBEV_0459 PF00171 Aldehyde dehydrogenase family BBEV_0460 PF00255 Glutathione peroxidase BBEV_0461 PF00171 Aldehyde dehydrogenase family BBEV_0462 PF02652 L-lactate permease BBEV_0464 PF00072 Response regulator receiver domain BBEV_0464 PF00486 Transcriptional regulatory protein, C terminal BBEV_0465 PF18698 Histidine kinase sensor domain BBEV_0465 PF00512 His Kinase A (phospho-acceptor) domain BBEV_0465 PF00672 HAMP domain BBEV_0465 PF00989 PAS fold BBEV_0465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0468 PF01758 Sodium Bile acid symporter family BBEV_0470 PF02634 FdhD/NarQ family BBEV_0471 PF05448 Acetyl xylan esterase (AXE1) BBEV_0472 PF05163 DinB family BBEV_0474 PF01238 Phosphomannose isomerase type I BBEV_0475 PF02682 Carboxyltransferase domain, subdomain C and D BBEV_0476 PF03746 LamB/YcsF family BBEV_0477 PF02626 Carboxyltransferase domain, subdomain A and B BBEV_0479 PF04461 Protein of unknown function (DUF520) BBEV_0485 PF00183 Hsp90 protein BBEV_0490 PF05343 M42 glutamyl aminopeptidase BBEV_0492 PF00311 Phosphoenolpyruvate carboxylase BBEV_0493 PF00474 Sodium:solute symporter family BBEV_0496 PF00692 dUTPase BBEV_0498 PF09186 Domain of unknown function (DUF1949) BBEV_0498 PF01205 Uncharacterized protein family UPF0029 BBEV_0499 PF05384 Sensor protein DegS BBEV_0499 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0499 PF07730 Histidine kinase BBEV_0500 PF00072 Response regulator receiver domain BBEV_0500 PF00196 Bacterial regulatory proteins, luxR family BBEV_0501 PF02645 Uncharacterised protein, DegV family COG1307 BBEV_0502 PF04851 Type III restriction enzyme, res subunit BBEV_0502 PF00271 Helicase conserved C-terminal domain BBEV_0505 PF04316 Anti-sigma-28 factor, FlgM BBEV_0507 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BBEV_0507 PF00460 Flagella basal body rod protein BBEV_0508 PF00700 Bacterial flagellin C-terminal helical region BBEV_0508 PF00669 Bacterial flagellin N-terminal helical region BBEV_0510 PF02623 FliW protein BBEV_0511 PF02599 Global regulator protein family BBEV_0512 PF00196 Bacterial regulatory proteins, luxR family BBEV_0512 PF00072 Response regulator receiver domain BBEV_0513 PF00700 Bacterial flagellin C-terminal helical region BBEV_0513 PF00669 Bacterial flagellin N-terminal helical region BBEV_0515 PF02599 Global regulator protein family BBEV_0516 PF00700 Bacterial flagellin C-terminal helical region BBEV_0516 PF00669 Bacterial flagellin N-terminal helical region BBEV_0518 PF06874 Firmicute fructose-1,6-bisphosphatase BBEV_0524 PF00313 'Cold-shock' DNA-binding domain BBEV_0526 PF01061 ABC-2 type transporter BBEV_0527 PF00465 Iron-containing alcohol dehydrogenase BBEV_0529 PF03631 Virulence factor BrkB BBEV_0530 PF12146 Serine aminopeptidase, S33 BBEV_0532 PF13460 NAD(P)H-binding BBEV_0533 PF00072 Response regulator receiver domain BBEV_0535 PF11871 Domain of unknown function (DUF3391) BBEV_0535 PF01966 HD domain BBEV_0536 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0537 PF07196 Flagellin hook IN motif BBEV_0537 PF07195 Flagellar hook-associated protein 2 C-terminus BBEV_0537 PF02465 Flagellar hook-associated protein 2 N-terminus BBEV_0538 PF07195 Flagellar hook-associated protein 2 C-terminus BBEV_0538 PF07196 Flagellin hook IN motif BBEV_0538 PF02465 Flagellar hook-associated protein 2 N-terminus BBEV_0540 PF03646 FlaG protein BBEV_0541 PF02561 Flagellar protein FliS BBEV_0543 PF00128 Alpha amylase, catalytic domain BBEV_0543 PF02903 Alpha amylase, N-terminal ig-like domain BBEV_0543 PF16657 Maltogenic Amylase, C-terminal domain BBEV_0546 PF00313 'Cold-shock' DNA-binding domain BBEV_0547 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BBEV_0547 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BBEV_0549 PF00874 PRD domain BBEV_0549 PF03123 CAT RNA binding domain BBEV_0550 PF01043 SecA preprotein cross-linking domain BBEV_0550 PF07517 SecA DEAD-like domain BBEV_0550 PF02810 SEC-C motif BBEV_0550 PF07516 SecA Wing and Scaffold domain BBEV_0551 PF00472 RF-1 domain BBEV_0551 PF03462 PCRF domain BBEV_0552 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BBEV_0552 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BBEV_0554 PF00005 ABC transporter BBEV_0555 PF02687 FtsX-like permease family BBEV_0555 PF18075 FtsX extracellular domain BBEV_0556 PF00877 NlpC/P60 family BBEV_0557 PF01471 Putative peptidoglycan binding domain BBEV_0557 PF03572 Peptidase family S41 BBEV_0557 PF17820 PDZ domain BBEV_0558 PF17820 PDZ domain BBEV_0559 PF00271 Helicase conserved C-terminal domain BBEV_0559 PF12344 Ultra-violet resistance protein B BBEV_0559 PF02151 UvrB/uvrC motif BBEV_0559 PF04851 Type III restriction enzyme, res subunit BBEV_0559 PF17757 UvrB interaction domain BBEV_0560 PF17760 UvrA interaction domain BBEV_0560 PF17755 UvrA DNA-binding domain BBEV_0561 PF13349 Putative adhesin BBEV_0562 PF04024 PspC domain BBEV_0563 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BBEV_0564 PF02603 HPr Serine kinase N terminus BBEV_0564 PF07475 HPr Serine kinase C-terminal domain BBEV_0565 PF01790 Prolipoprotein diacylglyceryl transferase BBEV_0566 PF07670 Nucleoside recognition BBEV_0567 PF13419 Haloacid dehalogenase-like hydrolase BBEV_0568 PF14602 Hexapeptide repeat of succinyl-transferase BBEV_0569 PF13393 Histidyl-tRNA synthetase BBEV_0570 PF01634 ATP phosphoribosyltransferase BBEV_0571 PF00815 Histidinol dehydrogenase BBEV_0572 PF00475 Imidazoleglycerol-phosphate dehydratase BBEV_0573 PF00117 Glutamine amidotransferase class-I BBEV_0574 PF00977 Histidine biosynthesis protein BBEV_0575 PF00977 Histidine biosynthesis protein BBEV_0576 PF01502 Phosphoribosyl-AMP cyclohydrolase BBEV_0576 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BBEV_0577 PF01593 Flavin containing amine oxidoreductase BBEV_0579 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_0580 PF03668 P-loop ATPase protein family BBEV_0581 PF01933 Uncharacterised protein family UPF0052 BBEV_0582 PF10298 WhiA N-terminal LAGLIDADG-like domain BBEV_0582 PF14527 WhiA LAGLIDADG-like domain BBEV_0582 PF02650 WhiA C-terminal HTH domain BBEV_0583 PF00381 PTS HPr component phosphorylation site BBEV_0584 PF00574 Clp protease BBEV_0585 PF04963 Sigma-54 factor, core binding domain BBEV_0585 PF04552 Sigma-54, DNA binding domain BBEV_0585 PF00309 Sigma-54 factor, Activator interacting domain (AID) BBEV_0586 PF04198 Putative sugar-binding domain BBEV_0587 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BBEV_0587 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BBEV_0588 PF00162 Phosphoglycerate kinase BBEV_0589 PF00121 Triosephosphate isomerase BBEV_0590 PF01676 Metalloenzyme superfamily BBEV_0590 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BBEV_0591 PF03952 Enolase, N-terminal domain BBEV_0591 PF00113 Enolase, C-terminal TIM barrel domain BBEV_0592 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BBEV_0592 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BBEV_0593 PF03840 Preprotein translocase SecG subunit BBEV_0594 PF00561 alpha/beta hydrolase fold BBEV_0595 PF12146 Serine aminopeptidase, S33 BBEV_0596 PF00773 RNB domain BBEV_0596 PF08206 Ribonuclease B OB domain BBEV_0596 PF00575 S1 RNA binding domain BBEV_0596 PF17876 Cold shock domain BBEV_0597 PF01668 SmpB protein BBEV_0598 PF01546 Peptidase family M20/M25/M40 BBEV_0598 PF07687 Peptidase dimerisation domain BBEV_0599 PF00920 Dehydratase family BBEV_0603 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0603 PF00989 PAS fold BBEV_0603 PF00512 His Kinase A (phospho-acceptor) domain BBEV_0603 PF16736 Single Cache-like BBEV_0604 PF00072 Response regulator receiver domain BBEV_0604 PF00486 Transcriptional regulatory protein, C terminal BBEV_0606 PF00344 SecY translocase BBEV_0607 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BBEV_0607 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BBEV_0607 PF00378 Enoyl-CoA hydratase/isomerase BBEV_0608 PF02803 Thiolase, C-terminal domain BBEV_0608 PF00108 Thiolase, N-terminal domain BBEV_0609 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BBEV_0609 PF02770 Acyl-CoA dehydrogenase, middle domain BBEV_0609 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BBEV_0611 PF01597 Glycine cleavage H-protein BBEV_0612 PF07690 Major Facilitator Superfamily BBEV_0613 PF00005 ABC transporter BBEV_0613 PF09383 NIL domain BBEV_0614 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0615 PF03180 NLPA lipoprotein BBEV_0619 PF00005 ABC transporter BBEV_0620 PF01458 Uncharacterized protein family (UPF0051) BBEV_0621 PF00266 Aminotransferase class-V BBEV_0622 PF01592 NifU-like N terminal domain BBEV_0623 PF01458 Uncharacterized protein family (UPF0051) BBEV_0624 PF01904 Protein of unknown function DUF72 BBEV_0625 PF01925 Sulfite exporter TauE/SafE BBEV_0626 PF02872 5'-nucleotidase, C-terminal domain BBEV_0627 PF11871 Domain of unknown function (DUF3391) BBEV_0627 PF01966 HD domain BBEV_0628 PF00303 Thymidylate synthase BBEV_0629 PF00186 Dihydrofolate reductase BBEV_0630 PF03553 Na+/H+ antiporter family BBEV_0632 PF06265 Protein of unknown function (DUF1027) BBEV_0634 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BBEV_0635 PF01934 Protein of unknown function DUF86 BBEV_0637 PF13344 Haloacid dehalogenase-like hydrolase BBEV_0638 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BBEV_0638 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BBEV_0639 PF01106 NifU-like domain BBEV_0640 PF07315 Protein of unknown function (DUF1462) BBEV_0641 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_0642 PF07293 Protein of unknown function (DUF1450) BBEV_0644 PF04055 Radical SAM superfamily BBEV_0645 PF01521 Iron-sulphur cluster biosynthesis BBEV_0646 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_0647 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_0649 PF14068 Putative membrane protein BBEV_0650 PF02681 Divergent PAP2 family BBEV_0652 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BBEV_0653 PF03480 Bacterial extracellular solute-binding protein, family 7 BBEV_0675 PF01012 Electron transfer flavoprotein domain BBEV_0676 PF01012 Electron transfer flavoprotein domain BBEV_0676 PF00766 Electron transfer flavoprotein FAD-binding domain BBEV_0679 PF01037 Lrp/AsnC ligand binding domain BBEV_0680 PF00155 Aminotransferase class I and II BBEV_0681 PF00575 S1 RNA binding domain BBEV_0682 PF00342 Phosphoglucose isomerase BBEV_0683 PF00689 Cation transporting ATPase, C-terminus BBEV_0683 PF00690 Cation transporter/ATPase, N-terminus BBEV_0686 PF14659 Phage integrase, N-terminal SAM-like domain BBEV_0686 PF00589 Phage integrase family BBEV_0687 PF13005 zinc-finger binding domain of transposase IS66 BBEV_0687 PF13007 Transposase C of IS166 homeodomain BBEV_0687 PF13817 IS66 C-terminal element BBEV_0687 PF03050 Transposase IS66 family BBEV_0695 PF02384 N-6 DNA Methylase BBEV_0695 PF12161 HsdM N-terminal domain BBEV_0697 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BBEV_0697 PF11867 Domain of unknown function (DUF3387) BBEV_0697 PF18766 SWI2/SNF2 ATPase BBEV_0700 PF00672 HAMP domain BBEV_0700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_0700 PF17202 Single cache domain 3 BBEV_0703 PF00209 Sodium:neurotransmitter symporter family BBEV_0705 PF03633 Glycosyl hydrolase family 65, C-terminal domain BBEV_0705 PF03632 Glycosyl hydrolase family 65 central catalytic domain BBEV_0705 PF03636 Glycosyl hydrolase family 65, N-terminal domain BBEV_0706 PF13686 DsrE/DsrF/DrsH-like family BBEV_0707 PF02583 Metal-sensitive transcriptional repressor BBEV_0708 PF02028 BCCT, betaine/carnitine/choline family transporter BBEV_0710 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BBEV_0710 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BBEV_0711 PF01053 Cys/Met metabolism PLP-dependent enzyme BBEV_0714 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_0715 PF00582 Universal stress protein family BBEV_0716 PF02634 FdhD/NarQ family BBEV_0718 PF09163 Formate dehydrogenase N, transmembrane BBEV_0718 PF12800 4Fe-4S binding domain BBEV_0718 PF13247 4Fe-4S dicluster domain BBEV_0721 PF12804 MobA-like NTP transferase domain BBEV_0722 PF03453 MoeA N-terminal region (domain I and II) BBEV_0722 PF03454 MoeA C-terminal region (domain IV) BBEV_0722 PF00994 Probable molybdopterin binding domain BBEV_0723 PF00994 Probable molybdopterin binding domain BBEV_0723 PF03453 MoeA N-terminal region (domain I and II) BBEV_0723 PF03454 MoeA C-terminal region (domain IV) BBEV_0724 PF02416 mttA/Hcf106 family BBEV_0725 PF00293 NUDIX domain BBEV_0726 PF00326 Prolyl oligopeptidase family BBEV_0728 PF01293 Phosphoenolpyruvate carboxykinase BBEV_0729 PF02773 S-adenosylmethionine synthetase, C-terminal domain BBEV_0729 PF02772 S-adenosylmethionine synthetase, central domain BBEV_0729 PF00438 S-adenosylmethionine synthetase, N-terminal domain BBEV_0730 PF00132 Bacterial transferase hexapeptide (six repeats) BBEV_0731 PF12146 Serine aminopeptidase, S33 BBEV_0732 PF10776 Protein of unknown function (DUF2600) BBEV_0733 PF06962 Putative rRNA methylase BBEV_0734 PF04055 Radical SAM superfamily BBEV_0734 PF16199 Radical_SAM C-terminal domain BBEV_0735 PF13603 Leucyl-tRNA synthetase, Domain 2 BBEV_0735 PF08264 Anticodon-binding domain of tRNA BBEV_0735 PF00133 tRNA synthetases class I (I, L, M and V) BBEV_0735 PF09334 tRNA synthetases class I (M) BBEV_0740 PF14748 Pyrroline-5-carboxylate reductase dimerisation BBEV_0740 PF03807 NADP oxidoreductase coenzyme F420-dependent BBEV_0741 PF01894 Uncharacterised protein family UPF0047 BBEV_0742 PF01098 Cell cycle protein BBEV_0743 PF01098 Cell cycle protein BBEV_0744 PF01479 S4 domain BBEV_0744 PF00849 RNA pseudouridylate synthase BBEV_0745 PF08220 DeoR-like helix-turn-helix domain BBEV_0746 PF12832 MFS_1 like family BBEV_0751 PF00343 Carbohydrate phosphorylase BBEV_0752 PF08323 Starch synthase catalytic domain BBEV_0752 PF00534 Glycosyl transferases group 1 BBEV_0753 PF00483 Nucleotidyl transferase BBEV_0754 PF00483 Nucleotidyl transferase BBEV_0755 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BBEV_0755 PF02806 Alpha amylase, C-terminal all-beta domain BBEV_0755 PF00128 Alpha amylase, catalytic domain BBEV_0756 PF00128 Alpha amylase, catalytic domain BBEV_0756 PF17999 Pullulanase N1-terminal domain BBEV_0756 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BBEV_0757 PF01636 Phosphotransferase enzyme family BBEV_0758 PF02390 Putative methyltransferase BBEV_0759 PF00753 Metallo-beta-lactamase superfamily BBEV_0761 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ BBEV_0764 PF07285 Protein of unknown function (DUF1444) BBEV_0768 PF02875 Mur ligase family, glutamate ligase domain BBEV_0768 PF08245 Mur ligase middle domain BBEV_0768 PF01225 Mur ligase family, catalytic domain BBEV_0769 PF02073 Thermophilic metalloprotease (M29) BBEV_0772 PF11009 Protein of unknown function (DUF2847) BBEV_0773 PF02491 SHS2 domain inserted in FTSA BBEV_0774 PF00793 DAHP synthetase I family BBEV_0774 PF01817 Chorismate mutase type II BBEV_0775 PF00356 Bacterial regulatory proteins, lacI family BBEV_0776 PF01618 MotA/TolQ/ExbB proton channel family BBEV_0777 PF00691 OmpA family BBEV_0777 PF13677 Membrane MotB of proton-channel complex MotA/MotB BBEV_0778 PF00583 Acetyltransferase (GNAT) family BBEV_0779 PF00571 CBS domain BBEV_0780 PF00850 Histone deacetylase domain BBEV_0781 PF00912 Transglycosylase BBEV_0781 PF00905 Penicillin binding protein transpeptidase domain BBEV_0782 PF01479 S4 domain BBEV_0782 PF00579 tRNA synthetases class I (W and Y) BBEV_0783 PF00248 Aldo/keto reductase family BBEV_0785 PF00005 ABC transporter BBEV_0785 PF13732 Domain of unknown function (DUF4162) BBEV_0789 PF01758 Sodium Bile acid symporter family BBEV_0793 PF01594 AI-2E family transporter BBEV_0796 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0798 PF00005 ABC transporter BBEV_0800 PF13186 Iron-sulfur cluster-binding domain BBEV_0800 PF04055 Radical SAM superfamily BBEV_0801 PF14256 YwiC-like protein BBEV_0803 PF00027 Cyclic nucleotide-binding domain BBEV_0803 PF00325 Bacterial regulatory proteins, crp family BBEV_0804 PF01568 Molydopterin dinucleotide binding domain BBEV_0804 PF00384 Molybdopterin oxidoreductase BBEV_0804 PF14710 Respiratory nitrate reductase alpha N-terminal BBEV_0805 PF13247 4Fe-4S dicluster domain BBEV_0805 PF14711 Respiratory nitrate reductase beta C-terminal BBEV_0806 PF02613 Nitrate reductase delta subunit BBEV_0807 PF02665 Nitrate reductase gamma subunit BBEV_0808 PF07690 Major Facilitator Superfamily BBEV_0809 PF07690 Major Facilitator Superfamily BBEV_0810 PF00005 ABC transporter BBEV_0811 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_0813 PF13545 Crp-like helix-turn-helix domain BBEV_0813 PF00027 Cyclic nucleotide-binding domain BBEV_0815 PF02335 Cytochrome c552 BBEV_0818 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BBEV_0818 PF01578 Cytochrome C assembly protein BBEV_0822 PF00005 ABC transporter BBEV_0824 PF01578 Cytochrome C assembly protein BBEV_0826 PF08534 Redoxin BBEV_0827 PF02110 Hydroxyethylthiazole kinase family BBEV_0828 PF08543 Phosphomethylpyrimidine kinase BBEV_0829 PF02581 Thiamine monophosphate synthase BBEV_0831 PF03372 Endonuclease/Exonuclease/phosphatase family BBEV_0832 PF05958 tRNA (Uracil-5-)-methyltransferase BBEV_0832 PF01938 TRAM domain BBEV_0836 PF02384 N-6 DNA Methylase BBEV_0837 PF01420 Type I restriction modification DNA specificity domain BBEV_0838 PF11867 Domain of unknown function (DUF3387) BBEV_0838 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BBEV_0838 PF18766 SWI2/SNF2 ATPase BBEV_0847 PF00440 Bacterial regulatory proteins, tetR family BBEV_0857 PF00163 Ribosomal protein S4/S9 N-terminal domain BBEV_0857 PF01479 S4 domain BBEV_0858 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0859 PF13185 GAF domain BBEV_0860 PF02811 PHP domain BBEV_0861 PF06160 Septation ring formation regulator, EzrA BBEV_0863 PF07969 Amidohydrolase family BBEV_0864 PF01513 ATP-NAD kinase BBEV_0865 PF01343 Peptidase family S49 BBEV_0866 PF06271 RDD family BBEV_0867 PF08534 Redoxin BBEV_0869 PF00871 Acetokinase family BBEV_0872 PF00582 Universal stress protein family BBEV_0875 PF01321 Creatinase/Prolidase N-terminal domain BBEV_0875 PF00557 Metallopeptidase family M24 BBEV_0878 PF00571 CBS domain BBEV_0878 PF07085 DRTGG domain BBEV_0878 PF00392 Bacterial regulatory proteins, gntR family BBEV_0878 PF03061 Thioesterase superfamily BBEV_0880 PF02272 DHHA1 domain BBEV_0880 PF01368 DHH family BBEV_0881 PF02811 PHP domain BBEV_0881 PF07733 Bacterial DNA polymerase III alpha NTPase domain BBEV_0881 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BBEV_0881 PF14579 Helix-hairpin-helix motif BBEV_0881 PF01336 OB-fold nucleic acid binding domain BBEV_0882 PF00390 Malic enzyme, N-terminal domain BBEV_0882 PF03949 Malic enzyme, NAD binding domain BBEV_0883 PF07729 FCD domain BBEV_0883 PF00392 Bacterial regulatory proteins, gntR family BBEV_0884 PF01039 Carboxyl transferase domain BBEV_0884 PF17848 Acetyl-coA carboxylase zinc finger domain BBEV_0885 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BBEV_0886 PF00365 Phosphofructokinase BBEV_0887 PF00391 PEP-utilising enzyme, mobile domain BBEV_0887 PF02887 Pyruvate kinase, alpha/beta domain BBEV_0887 PF00224 Pyruvate kinase, barrel domain BBEV_0888 PF04186 FxsA cytoplasmic membrane protein BBEV_0889 PF04284 Protein of unknown function (DUF441) BBEV_0890 PF00285 Citrate synthase, C-terminal domain BBEV_0891 PF00180 Isocitrate/isopropylmalate dehydrogenase BBEV_0892 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BBEV_0892 PF00056 lactate/malate dehydrogenase, NAD binding domain BBEV_0894 PF00072 Response regulator receiver domain BBEV_0894 PF00486 Transcriptional regulatory protein, C terminal BBEV_0895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0895 PF00512 His Kinase A (phospho-acceptor) domain BBEV_0895 PF00989 PAS fold BBEV_0895 PF16736 Single Cache-like BBEV_0896 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BBEV_0896 PF01367 5'-3' exonuclease, C-terminal SAM fold BBEV_0896 PF00476 DNA polymerase family A BBEV_0897 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BBEV_0897 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BBEV_0897 PF06827 Zinc finger found in FPG and IleRS BBEV_0898 PF01121 Dephospho-CoA kinase BBEV_0899 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BBEV_0899 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BBEV_0901 PF03477 ATP cone domain BBEV_0902 PF07261 Replication initiation and membrane attachment BBEV_0903 PF07319 Primosomal protein DnaI N-terminus BBEV_0903 PF01695 IstB-like ATP binding protein BBEV_0904 PF04055 Radical SAM superfamily BBEV_0905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BBEV_0905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BBEV_0905 PF02824 TGS domain BBEV_0905 PF03129 Anticodon binding domain BBEV_0907 PF00707 Translation initiation factor IF-3, C-terminal domain BBEV_0907 PF05198 Translation initiation factor IF-3, N-terminal domain BBEV_0908 PF01632 Ribosomal protein L35 BBEV_0909 PF00453 Ribosomal protein L20 BBEV_0912 PF07730 Histidine kinase BBEV_0913 PF00072 Response regulator receiver domain BBEV_0913 PF00196 Bacterial regulatory proteins, luxR family BBEV_0914 PF00005 ABC transporter BBEV_0919 PF05343 M42 glutamyl aminopeptidase BBEV_0922 PF00588 SpoU rRNA Methylase family BBEV_0922 PF08032 RNA 2'-O ribose methyltransferase substrate binding BBEV_0923 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BBEV_0923 PF01409 tRNA synthetases class II core domain (F) BBEV_0924 PF03147 Ferredoxin-fold anticodon binding domain BBEV_0924 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BBEV_0924 PF03483 B3/4 domain BBEV_0924 PF03484 tRNA synthetase B5 domain BBEV_0924 PF01588 Putative tRNA binding domain BBEV_0926 PF11858 Domain of unknown function (DUF3378) BBEV_0926 PF01351 Ribonuclease HII BBEV_0927 PF05164 Cell division protein ZapA BBEV_0929 PF02811 PHP domain BBEV_0929 PF14791 DNA polymerase beta thumb BBEV_0929 PF14716 Helix-hairpin-helix domain BBEV_0930 PF00488 MutS domain V BBEV_0930 PF01713 Smr domain BBEV_0931 PF03994 Domain of Unknown Function (DUF350) BBEV_0933 PF00501 AMP-binding enzyme BBEV_0933 PF13193 AMP-binding enzyme C-terminal domain BBEV_0934 PF00501 AMP-binding enzyme BBEV_0934 PF13193 AMP-binding enzyme C-terminal domain BBEV_0935 PF00440 Bacterial regulatory proteins, tetR family BBEV_0935 PF08359 YsiA-like protein, C-terminal region BBEV_0936 PF00378 Enoyl-CoA hydratase/isomerase BBEV_0937 PF01012 Electron transfer flavoprotein domain BBEV_0938 PF01012 Electron transfer flavoprotein domain BBEV_0938 PF00766 Electron transfer flavoprotein FAD-binding domain BBEV_0939 PF00085 Thioredoxin BBEV_0940 PF08459 UvrC Helix-hairpin-helix N-terminal BBEV_0940 PF01541 GIY-YIG catalytic domain BBEV_0940 PF02151 UvrB/uvrC motif BBEV_0941 PF00696 Amino acid kinase family BBEV_0941 PF13840 ACT domain BBEV_0942 PF10702 Protein of unknown function (DUF2507) BBEV_0943 PF02386 Cation transport protein BBEV_0944 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BBEV_0945 PF02910 Fumarate reductase flavoprotein C-term BBEV_0945 PF00890 FAD binding domain BBEV_0946 PF13085 2Fe-2S iron-sulfur cluster binding domain BBEV_0946 PF13183 4Fe-4S dicluster domain BBEV_0947 PF03061 Thioesterase superfamily BBEV_0948 PF00874 PRD domain BBEV_0948 PF03123 CAT RNA binding domain BBEV_0949 PF00381 PTS HPr component phosphorylation site BBEV_0950 PF00391 PEP-utilising enzyme, mobile domain BBEV_0950 PF02896 PEP-utilising enzyme, TIM barrel domain BBEV_0950 PF05524 PEP-utilising enzyme, N-terminal BBEV_0951 PF01047 MarR family BBEV_0952 PF01177 Asp/Glu/Hydantoin racemase BBEV_0953 PF03725 3' exoribonuclease family, domain 2 BBEV_0953 PF01138 3' exoribonuclease family, domain 1 BBEV_0954 PF01725 Ham1 family BBEV_0955 PF12850 Calcineurin-like phosphoesterase superfamily domain BBEV_0958 PF05697 Bacterial trigger factor protein (TF) BBEV_0958 PF05698 Bacterial trigger factor protein (TF) C-terminus BBEV_0958 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BBEV_0959 PF10431 C-terminal, D2-small domain, of ClpB protein BBEV_0959 PF07724 AAA domain (Cdc48 subfamily) BBEV_0959 PF06689 ClpX C4-type zinc finger BBEV_0960 PF02190 ATP-dependent protease La (LON) substrate-binding domain BBEV_0960 PF05362 Lon protease (S16) C-terminal proteolytic domain BBEV_0960 PF00004 ATPase family associated with various cellular activities (AAA) BBEV_0961 PF01926 50S ribosome-binding GTPase BBEV_0962 PF00005 ABC transporter BBEV_0963 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BBEV_0963 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BBEV_0963 PF01488 Shikimate / quinate 5-dehydrogenase BBEV_0964 PF01578 Cytochrome C assembly protein BBEV_0965 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BBEV_0965 PF03900 Porphobilinogen deaminase, C-terminal domain BBEV_0967 PF00490 Delta-aminolevulinic acid dehydratase BBEV_0968 PF00202 Aminotransferase class-III BBEV_0973 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_0973 PF07730 Histidine kinase BBEV_0974 PF00196 Bacterial regulatory proteins, luxR family BBEV_0974 PF00072 Response regulator receiver domain BBEV_0975 PF18030 RimK PreATP-grasp domain BBEV_0975 PF08443 RimK-like ATP-grasp domain BBEV_0976 PF08443 RimK-like ATP-grasp domain BBEV_0976 PF18030 RimK PreATP-grasp domain BBEV_0977 PF08245 Mur ligase middle domain BBEV_0977 PF02875 Mur ligase family, glutamate ligase domain BBEV_0978 PF07694 5TMR of 5TMR-LYT BBEV_0978 PF00990 Diguanylate cyclase, GGDEF domain BBEV_0981 PF00437 Type II/IV secretion system protein BBEV_0982 PF00437 Type II/IV secretion system protein BBEV_0983 PF00482 Type II secretion system (T2SS), protein F BBEV_0984 PF07963 Prokaryotic N-terminal methylation motif BBEV_0984 PF00114 Pilin (bacterial filament) BBEV_0985 PF07963 Prokaryotic N-terminal methylation motif BBEV_0985 PF00114 Pilin (bacterial filament) BBEV_0986 PF06750 Bacterial Peptidase A24 N-terminal domain BBEV_0986 PF01478 Type IV leader peptidase family BBEV_0991 PF10415 Fumarase C C-terminus BBEV_0991 PF00206 Lyase BBEV_0992 PF02545 Maf-like protein BBEV_0993 PF04002 RadC-like JAB domain BBEV_0995 PF04085 rod shape-determining protein MreC BBEV_0996 PF04093 rod shape-determining protein MreD BBEV_0997 PF03775 Septum formation inhibitor MinC, C-terminal domain BBEV_0998 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BBEV_0999 PF01547 Bacterial extracellular solute-binding protein BBEV_1000 PF00356 Bacterial regulatory proteins, lacI family BBEV_1001 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_1002 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_1003 PF10150 Ribonuclease E/G family BBEV_1004 PF00829 Ribosomal prokaryotic L21 protein BBEV_1005 PF04327 Cysteine protease Prp BBEV_1006 PF01016 Ribosomal L27 protein BBEV_1007 PF00753 Metallo-beta-lactamase superfamily BBEV_1007 PF12706 Beta-lactamase superfamily domain BBEV_1008 PF12849 PBP superfamily domain BBEV_1009 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_1010 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_1011 PF00005 ABC transporter BBEV_1012 PF01895 PhoU domain BBEV_1013 PF07457 Protein of unknown function (DUF1516) BBEV_1014 PF00196 Bacterial regulatory proteins, luxR family BBEV_1014 PF00072 Response regulator receiver domain BBEV_1016 PF00672 HAMP domain BBEV_1016 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_1016 PF17202 Single cache domain 3 BBEV_1018 PF01568 Molydopterin dinucleotide binding domain BBEV_1018 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_1018 PF00384 Molybdopterin oxidoreductase BBEV_1018 PF10518 TAT (twin-arginine translocation) pathway signal sequence BBEV_1019 PF12800 4Fe-4S binding domain BBEV_1019 PF13247 4Fe-4S dicluster domain BBEV_1022 PF00581 Rhodanese-like domain BBEV_1023 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BBEV_1023 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BBEV_1026 PF03707 Bacterial signalling protein N terminal repeat BBEV_1026 PF00563 EAL domain BBEV_1026 PF00990 Diguanylate cyclase, GGDEF domain BBEV_1027 PF00486 Transcriptional regulatory protein, C terminal BBEV_1027 PF00072 Response regulator receiver domain BBEV_1028 PF13426 PAS domain BBEV_1028 PF00512 His Kinase A (phospho-acceptor) domain BBEV_1028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_1028 PF00672 HAMP domain BBEV_1031 PF00873 AcrB/AcrD/AcrF family BBEV_1033 PF00795 Carbon-nitrogen hydrolase BBEV_1033 PF00583 Acetyltransferase (GNAT) family BBEV_1034 PF04309 Glycerol-3-phosphate responsive antiterminator BBEV_1035 PF00230 Major intrinsic protein BBEV_1036 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BBEV_1036 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BBEV_1037 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BBEV_1037 PF01266 FAD dependent oxidoreductase BBEV_1038 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BBEV_1038 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BBEV_1038 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BBEV_1038 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BBEV_1039 PF03144 Elongation factor Tu domain 2 BBEV_1039 PF16658 Class II release factor RF3, C-terminal domain BBEV_1039 PF00009 Elongation factor Tu GTP binding domain BBEV_1040 PF07556 Protein of unknown function (DUF1538) BBEV_1041 PF07556 Protein of unknown function (DUF1538) BBEV_1043 PF00694 Aconitase C-terminal domain BBEV_1044 PF00330 Aconitase family (aconitate hydratase) BBEV_1045 PF00180 Isocitrate/isopropylmalate dehydrogenase BBEV_1046 PF08502 LeuA allosteric (dimerisation) domain BBEV_1046 PF00682 HMGL-like BBEV_1047 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BBEV_1047 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BBEV_1048 PF10369 Small subunit of acetolactate synthase BBEV_1048 PF01842 ACT domain BBEV_1049 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BBEV_1049 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BBEV_1049 PF00205 Thiamine pyrophosphate enzyme, central domain BBEV_1050 PF01063 Amino-transferase class IV BBEV_1054 PF00248 Aldo/keto reductase family BBEV_1057 PF07690 Major Facilitator Superfamily BBEV_1058 PF00557 Metallopeptidase family M24 BBEV_1060 PF01740 STAS domain BBEV_1060 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BBEV_1064 PF03109 ABC1 family BBEV_1065 PF00294 pfkB family carbohydrate kinase BBEV_1066 PF04227 Indigoidine synthase A like protein BBEV_1068 PF00005 ABC transporter BBEV_1069 PF02322 Cytochrome bd terminal oxidase subunit II BBEV_1070 PF01654 Cytochrome bd terminal oxidase subunit I BBEV_1072 PF13460 NAD(P)H-binding BBEV_1074 PF17912 MalK OB fold domain BBEV_1074 PF03459 TOBE domain BBEV_1074 PF00005 ABC transporter BBEV_1075 PF13556 PucR C-terminal helix-turn-helix domain BBEV_1077 PF04286 Protein of unknown function (DUF445) BBEV_1081 PF00149 Calcineurin-like phosphoesterase BBEV_1082 PF13514 AAA domain BBEV_1083 PF00072 Response regulator receiver domain BBEV_1083 PF00486 Transcriptional regulatory protein, C terminal BBEV_1084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_1084 PF00672 HAMP domain BBEV_1084 PF00512 His Kinase A (phospho-acceptor) domain BBEV_1085 PF01336 OB-fold nucleic acid binding domain BBEV_1085 PF01966 HD domain BBEV_1089 PF01047 MarR family BBEV_1090 PF00266 Aminotransferase class-V BBEV_1091 PF01230 HIT domain BBEV_1092 PF00005 ABC transporter BBEV_1095 PF01546 Peptidase family M20/M25/M40 BBEV_1095 PF07687 Peptidase dimerisation domain BBEV_1096 PF02683 Cytochrome C biogenesis protein transmembrane region BBEV_1097 PF00912 Transglycosylase BBEV_1097 PF00905 Penicillin binding protein transpeptidase domain BBEV_1098 PF01208 Uroporphyrinogen decarboxylase (URO-D) BBEV_1102 PF14682 Sporulation initiation phospho-transferase B, C-terminal BBEV_1102 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BBEV_1103 PF01018 GTP1/OBG BBEV_1103 PF01926 50S ribosome-binding GTPase BBEV_1103 PF09269 Domain of unknown function (DUF1967) BBEV_1104 PF01842 ACT domain BBEV_1105 PF01842 ACT domain BBEV_1105 PF00800 Prephenate dehydratase BBEV_1106 PF01330 RuvA N terminal domain BBEV_1106 PF07499 RuvA, C-terminal domain BBEV_1107 PF05496 Holliday junction DNA helicase RuvB P-loop domain BBEV_1107 PF05491 RuvB C-terminal winged helix domain BBEV_1107 PF17864 RuvB AAA lid domain BBEV_1108 PF11146 Protein of unknown function (DUF2905) BBEV_1109 PF02547 Queuosine biosynthesis protein BBEV_1110 PF01702 Queuine tRNA-ribosyltransferase BBEV_1111 PF02699 Preprotein translocase subunit BBEV_1114 PF02355 Protein export membrane protein BBEV_1114 PF07549 SecD/SecF GG Motif BBEV_1115 PF07549 SecD/SecF GG Motif BBEV_1115 PF02355 Protein export membrane protein BBEV_1116 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BBEV_1116 PF01368 DHH family BBEV_1116 PF17768 RecJ OB domain BBEV_1116 PF02272 DHHA1 domain BBEV_1117 PF00156 Phosphoribosyl transferase domain BBEV_1119 PF02580 D-Tyr-tRNA(Tyr) deacylase BBEV_1120 PF03129 Anticodon binding domain BBEV_1120 PF13393 Histidyl-tRNA synthetase BBEV_1121 PF00152 tRNA synthetases class II (D, K and N) BBEV_1121 PF01336 OB-fold nucleic acid binding domain BBEV_1121 PF02938 GAD domain BBEV_1122 PF00899 ThiF family BBEV_1123 PF02652 L-lactate permease BBEV_1124 PF02754 Cysteine-rich domain BBEV_1125 PF11870 Domain of unknown function (DUF3390) BBEV_1125 PF13183 4Fe-4S dicluster domain BBEV_1125 PF02589 LUD domain BBEV_1126 PF02589 LUD domain BBEV_1127 PF12002 MgsA AAA+ ATPase C terminal BBEV_1127 PF16193 AAA C-terminal domain BBEV_1127 PF00004 ATPase family associated with various cellular activities (AAA) BBEV_1129 PF02082 Transcriptional regulator BBEV_1130 PF00266 Aminotransferase class-V BBEV_1133 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BBEV_1133 PF14490 Helix-hairpin-helix containing domain BBEV_1133 PF13538 UvrD-like helicase C-terminal domain BBEV_1135 PF02272 DHHA1 domain BBEV_1135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BBEV_1135 PF01411 tRNA synthetases class II (A) BBEV_1136 PF06135 IreB regulatory phosphoprotein BBEV_1137 PF03652 Holliday junction resolvase BBEV_1138 PF06949 Protein of unknown function (DUF1292) BBEV_1143 PF00485 Phosphoribulokinase / Uridine kinase family BBEV_1144 PF01272 Transcription elongation factor, GreA/GreB, C-term BBEV_1144 PF03449 Transcription elongation factor, N-terminal BBEV_1146 PF01048 Phosphorylase superfamily BBEV_1149 PF00326 Prolyl oligopeptidase family BBEV_1149 PF07676 WD40-like Beta Propeller Repeat BBEV_1150 PF00356 Bacterial regulatory proteins, lacI family BBEV_1151 PF16657 Maltogenic Amylase, C-terminal domain BBEV_1151 PF00128 Alpha amylase, catalytic domain BBEV_1152 PF01297 Zinc-uptake complex component A periplasmic BBEV_1153 PF00313 'Cold-shock' DNA-binding domain BBEV_1154 PF00795 Carbon-nitrogen hydrolase BBEV_1157 PF01625 Peptide methionine sulfoxide reductase BBEV_1157 PF01641 SelR domain BBEV_1159 PF00753 Metallo-beta-lactamase superfamily BBEV_1159 PF03772 Competence protein BBEV_1159 PF13567 Domain of unknown function (DUF4131) BBEV_1160 PF09529 Integral membrane protein (intg_mem_TP0381) BBEV_1161 PF00293 NUDIX domain BBEV_1162 PF16916 Dimerisation domain of Zinc Transporter BBEV_1162 PF01545 Cation efflux family BBEV_1163 PF00296 Luciferase-like monooxygenase BBEV_1164 PF02645 Uncharacterised protein, DegV family COG1307 BBEV_1167 PF00226 DnaJ domain BBEV_1167 PF01556 DnaJ C terminal domain BBEV_1167 PF00684 DnaJ central domain BBEV_1168 PF03063 Prismane/CO dehydrogenase family BBEV_1169 PF03707 Bacterial signalling protein N terminal repeat BBEV_1169 PF00990 Diguanylate cyclase, GGDEF domain BBEV_1169 PF00563 EAL domain BBEV_1171 PF01678 Diaminopimelate epimerase BBEV_1172 PF00248 Aldo/keto reductase family BBEV_1173 PF03099 Biotin/lipoate A/B protein ligase family BBEV_1173 PF10437 Bacterial lipoate protein ligase C-terminus BBEV_1174 PF01569 PAP2 superfamily BBEV_1175 PF01048 Phosphorylase superfamily BBEV_1176 PF00578 AhpC/TSA family BBEV_1177 PF00578 AhpC/TSA family BBEV_1177 PF10417 C-terminal domain of 1-Cys peroxiredoxin BBEV_1179 PF13735 tRNA nucleotidyltransferase domain 2 putative BBEV_1179 PF12627 Probable RNA and SrmB- binding site of polymerase A BBEV_1179 PF01743 Poly A polymerase head domain BBEV_1180 PF01066 CDP-alcohol phosphatidyltransferase BBEV_1181 PF02666 Phosphatidylserine decarboxylase BBEV_1182 PF05651 Putative sugar diacid recognition BBEV_1182 PF17853 GGDEF-like domain BBEV_1182 PF13556 PucR C-terminal helix-turn-helix domain BBEV_1183 PF02913 FAD linked oxidases, C-terminal domain BBEV_1183 PF01565 FAD binding domain BBEV_1184 PF02754 Cysteine-rich domain BBEV_1184 PF13183 4Fe-4S dicluster domain BBEV_1194 PF01926 50S ribosome-binding GTPase BBEV_1195 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BBEV_1195 PF08501 Shikimate dehydrogenase substrate binding domain BBEV_1195 PF01488 Shikimate / quinate 5-dehydrogenase BBEV_1196 PF01985 CRS1 / YhbY (CRM) domain BBEV_1197 PF01467 Cytidylyltransferase-like BBEV_1198 PF01966 HD domain BBEV_1200 PF13649 Methyltransferase domain BBEV_1201 PF10531 SLBB domain BBEV_1202 PF03772 Competence protein BBEV_1202 PF13567 Domain of unknown function (DUF4131) BBEV_1202 PF00753 Metallo-beta-lactamase superfamily BBEV_1203 PF14141 YqzM-like protein BBEV_1204 PF06144 DNA polymerase III, delta subunit BBEV_1205 PF01649 Ribosomal protein S20 BBEV_1206 PF00679 Elongation factor G C-terminus BBEV_1206 PF14492 Elongation Factor G, domain II BBEV_1206 PF00009 Elongation factor Tu GTP binding domain BBEV_1206 PF06421 GTP-binding protein LepA C-terminus BBEV_1206 PF03144 Elongation factor Tu domain 2 BBEV_1207 PF06969 HemN C-terminal domain BBEV_1207 PF04055 Radical SAM superfamily BBEV_1208 PF01628 HrcA protein C terminal domain BBEV_1208 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BBEV_1209 PF01025 GrpE BBEV_1210 PF00012 Hsp70 protein BBEV_1211 PF00226 DnaJ domain BBEV_1211 PF00684 DnaJ central domain BBEV_1211 PF01556 DnaJ C terminal domain BBEV_1213 PF04452 RNA methyltransferase BBEV_1214 PF01938 TRAM domain BBEV_1214 PF00919 Uncharacterized protein family UPF0004 BBEV_1214 PF04055 Radical SAM superfamily BBEV_1215 PF01165 Ribosomal protein S21 BBEV_1216 PF09424 Yqey-like protein BBEV_1217 PF01957 NfeD-like C-terminal, partner-binding BBEV_1217 PF01972 Serine dehydrogenase proteinase BBEV_1218 PF12127 SigmaW regulon antibacterial BBEV_1220 PF02562 PhoH-like protein BBEV_1221 PF01966 HD domain BBEV_1221 PF07697 7TM-HD extracellular BBEV_1221 PF07698 7TM receptor with intracellular HD hydrolase BBEV_1222 PF02130 Uncharacterized protein family UPF0054 BBEV_1223 PF01219 Prokaryotic diacylglycerol kinase BBEV_1224 PF07650 KH domain BBEV_1224 PF01926 50S ribosome-binding GTPase BBEV_1225 PF02565 Recombination protein O C terminal BBEV_1225 PF11967 Recombination protein O N terminal BBEV_1226 PF02091 Glycyl-tRNA synthetase alpha subunit BBEV_1227 PF02092 Glycyl-tRNA synthetase beta subunit BBEV_1227 PF05746 DALR anticodon binding domain BBEV_1228 PF08279 HTH domain BBEV_1228 PF00571 CBS domain BBEV_1229 PF03618 Kinase/pyrophosphorylase BBEV_1230 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BBEV_1231 PF08275 DNA primase catalytic core, N-terminal domain BBEV_1231 PF01807 CHC2 zinc finger BBEV_1231 PF10410 DnaB-helicase binding domain of primase BBEV_1232 PF00140 Sigma-70 factor, region 1.2 BBEV_1232 PF04542 Sigma-70 region 2 BBEV_1232 PF03979 Sigma-70 factor, region 1.1 BBEV_1232 PF04539 Sigma-70 region 3 BBEV_1232 PF04545 Sigma-70, region 4 BBEV_1234 PF03009 Glycerophosphoryl diester phosphodiesterase family BBEV_1236 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BBEV_1237 PF01784 NIF3 (NGG1p interacting factor 3) BBEV_1238 PF02401 LytB protein BBEV_1239 PF02559 CarD-like/TRCF domain BBEV_1240 PF00270 DEAD/DEAH box helicase BBEV_1240 PF00271 Helicase conserved C-terminal domain BBEV_1241 PF01261 Xylose isomerase-like TIM barrel BBEV_1242 PF00005 ABC transporter BBEV_1243 PF00950 ABC 3 transport family BBEV_1245 PF02503 Polyphosphate kinase middle domain BBEV_1245 PF13090 Polyphosphate kinase C-terminal domain 2 BBEV_1245 PF17941 Polyphosphate kinase C-terminal domain 1 BBEV_1245 PF13089 Polyphosphate kinase N-terminal domain BBEV_1246 PF02541 Ppx/GppA phosphatase family BBEV_1247 PF00005 ABC transporter BBEV_1248 PF00950 ABC 3 transport family BBEV_1249 PF00950 ABC 3 transport family BBEV_1250 PF01475 Ferric uptake regulator family BBEV_1251 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) BBEV_1252 PF06207 Protein of unknown function (DUF1002) BBEV_1254 PF06691 Protein of unknown function (DUF1189) BBEV_1259 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BBEV_1259 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BBEV_1263 PF01966 HD domain BBEV_1264 PF01812 5-formyltetrahydrofolate cyclo-ligase family BBEV_1265 PF00899 ThiF family BBEV_1267 PF01694 Rhomboid family BBEV_1270 PF00480 ROK family BBEV_1271 PF00005 ABC transporter BBEV_1272 PF03649 Uncharacterised protein family (UPF0014) BBEV_1274 PF01910 Thiamine-binding protein BBEV_1277 PF00753 Metallo-beta-lactamase superfamily BBEV_1278 PF11117 Protein of unknown function (DUF2626) BBEV_1280 PF12732 YtxH-like protein BBEV_1281 PF00437 Type II/IV secretion system protein BBEV_1283 PF07963 Prokaryotic N-terminal methylation motif BBEV_1288 PF01571 Aminomethyltransferase folate-binding domain BBEV_1288 PF08669 Glycine cleavage T-protein C-terminal barrel domain BBEV_1289 PF02347 Glycine cleavage system P-protein BBEV_1290 PF02347 Glycine cleavage system P-protein BBEV_1291 PF00581 Rhodanese-like domain BBEV_1292 PF02867 Ribonucleotide reductase, barrel domain BBEV_1292 PF03477 ATP cone domain BBEV_1292 PF00317 Ribonucleotide reductase, all-alpha domain BBEV_1294 PF01325 Iron dependent repressor, N-terminal DNA binding domain BBEV_1294 PF02742 Iron dependent repressor, metal binding and dimerisation domain BBEV_1297 PF01321 Creatinase/Prolidase N-terminal domain BBEV_1297 PF00557 Metallopeptidase family M24 BBEV_1298 PF08207 Elongation factor P (EF-P) KOW-like domain BBEV_1298 PF09285 Elongation factor P, C-terminal BBEV_1298 PF01132 Elongation factor P (EF-P) OB domain BBEV_1301 PF00364 Biotin-requiring enzyme BBEV_1302 PF02785 Biotin carboxylase C-terminal domain BBEV_1302 PF00289 Biotin carboxylase, N-terminal domain BBEV_1302 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BBEV_1303 PF03780 Asp23 family, cell envelope-related function BBEV_1304 PF01029 NusB family BBEV_1305 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BBEV_1305 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BBEV_1306 PF13742 OB-fold nucleic acid binding domain BBEV_1306 PF02601 Exonuclease VII, large subunit BBEV_1307 PF02609 Exonuclease VII small subunit BBEV_1308 PF00348 Polyprenyl synthetase BBEV_1310 PF02779 Transketolase, pyrimidine binding domain BBEV_1310 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BBEV_1310 PF02780 Transketolase, C-terminal domain BBEV_1311 PF01479 S4 domain BBEV_1311 PF01728 FtsJ-like methyltransferase BBEV_1312 PF02863 Arginine repressor, C-terminal domain BBEV_1312 PF01316 Arginine repressor, DNA binding domain BBEV_1313 PF02463 RecF/RecN/SMC N terminal domain BBEV_1316 PF00158 Sigma-54 interaction domain BBEV_1316 PF00989 PAS fold BBEV_1316 PF02954 Bacterial regulatory protein, Fis family BBEV_1317 PF01515 Phosphate acetyl/butaryl transferase BBEV_1318 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BBEV_1318 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_1319 PF00871 Acetokinase family BBEV_1320 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_1320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BBEV_1321 PF00676 Dehydrogenase E1 component BBEV_1322 PF02780 Transketolase, C-terminal domain BBEV_1322 PF02779 Transketolase, pyrimidine binding domain BBEV_1323 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BBEV_1323 PF02817 e3 binding domain BBEV_1323 PF00364 Biotin-requiring enzyme BBEV_1325 PF06491 Disulphide isomerase BBEV_1328 PF06081 Aromatic acid exporter family member 1 BBEV_1328 PF11728 Putative aromatic acid exporter C-terminal domain BBEV_1331 PF01039 Carboxyl transferase domain BBEV_1332 PF01546 Peptidase family M20/M25/M40 BBEV_1332 PF07687 Peptidase dimerisation domain BBEV_1335 PF11799 impB/mucB/samB family C-terminal domain BBEV_1335 PF00817 impB/mucB/samB family BBEV_1337 PF01312 FlhB HrpN YscU SpaS Family BBEV_1339 PF00669 Bacterial flagellin N-terminal helical region BBEV_1339 PF00700 Bacterial flagellin C-terminal helical region BBEV_1340 PF03885 Protein of unknown function (DUF327) BBEV_1341 PF00128 Alpha amylase, catalytic domain BBEV_1342 PF00356 Bacterial regulatory proteins, lacI family BBEV_1345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BBEV_1349 PF13411 MerR HTH family regulatory protein BBEV_1351 PF01593 Flavin containing amine oxidoreductase BBEV_1352 PF14748 Pyrroline-5-carboxylate reductase dimerisation BBEV_1352 PF03807 NADP oxidoreductase coenzyme F420-dependent BBEV_1353 PF00106 short chain dehydrogenase BBEV_1355 PF01451 Low molecular weight phosphotyrosine protein phosphatase BBEV_1357 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain BBEV_1357 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 BBEV_1360 PF01593 Flavin containing amine oxidoreductase BBEV_1363 PF01593 Flavin containing amine oxidoreductase BBEV_1364 PF00535 Glycosyl transferase family 2 BBEV_1369 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BBEV_1370 PF02673 Bacitracin resistance protein BacA BBEV_1371 PF08534 Redoxin BBEV_1372 PF00248 Aldo/keto reductase family BBEV_1373 PF00293 NUDIX domain BBEV_1374 PF01475 Ferric uptake regulator family BBEV_1375 PF02899 Phage integrase, N-terminal SAM-like domain BBEV_1375 PF00589 Phage integrase family BBEV_1376 PF01676 Metalloenzyme superfamily BBEV_1377 PF01048 Phosphorylase superfamily BBEV_1378 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BBEV_1378 PF00591 Glycosyl transferase family, a/b domain BBEV_1378 PF02885 Glycosyl transferase family, helical bundle domain BBEV_1379 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BBEV_1379 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BBEV_1380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BBEV_1385 PF01872 RibD C-terminal domain BBEV_1385 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BBEV_1386 PF00677 Lumazine binding domain BBEV_1387 PF00925 GTP cyclohydrolase II BBEV_1387 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BBEV_1388 PF00885 6,7-dimethyl-8-ribityllumazine synthase BBEV_1389 PF03745 Domain of unknown function (DUF309) BBEV_1390 PF02616 Segregation and condensation protein ScpA BBEV_1391 PF04079 Segregation and condensation complex subunit ScpB BBEV_1392 PF13047 Protein of unknown function (DUF3907) BBEV_1394 PF13247 4Fe-4S dicluster domain BBEV_1396 PF01479 S4 domain BBEV_1396 PF00849 RNA pseudouridylate synthase BBEV_1397 PF00578 AhpC/TSA family BBEV_1398 PF05140 ResB-like family BBEV_1399 PF01578 Cytochrome C assembly protein BBEV_1400 PF00072 Response regulator receiver domain BBEV_1400 PF00486 Transcriptional regulatory protein, C terminal BBEV_1401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_1401 PF00512 His Kinase A (phospho-acceptor) domain BBEV_1401 PF00672 HAMP domain BBEV_1401 PF18698 Histidine kinase sensor domain BBEV_1401 PF00989 PAS fold BBEV_1402 PF00994 Probable molybdopterin binding domain BBEV_1403 PF01923 Cobalamin adenosyltransferase BBEV_1404 PF13145 PPIC-type PPIASE domain BBEV_1405 PF01842 ACT domain BBEV_1405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BBEV_1405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BBEV_1406 PF00392 Bacterial regulatory proteins, gntR family BBEV_1406 PF07729 FCD domain BBEV_1407 PF13545 Crp-like helix-turn-helix domain BBEV_1407 PF00027 Cyclic nucleotide-binding domain BBEV_1409 PF14493 Helix-turn-helix domain BBEV_1417 PF01268 Formate--tetrahydrofolate ligase BBEV_1418 PF13411 MerR HTH family regulatory protein BBEV_1419 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_1419 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BBEV_1421 PF17763 Glutaminase/Asparaginase C-terminal domain BBEV_1421 PF00710 Asparaginase, N-terminal BBEV_1422 PF13367 PrsW family intramembrane metalloprotease BBEV_1425 PF02224 Cytidylate kinase BBEV_1426 PF01553 Acyltransferase BBEV_1427 PF00575 S1 RNA binding domain BBEV_1428 PF01070 FMN-dependent dehydrogenase BBEV_1429 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BBEV_1429 PF01926 50S ribosome-binding GTPase BBEV_1430 PF02660 Glycerol-3-phosphate acyltransferase BBEV_1431 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BBEV_1431 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BBEV_1432 PF10966 Protein of unknown function (DUF2768) BBEV_1434 PF00216 Bacterial DNA-binding protein BBEV_1435 PF01227 GTP cyclohydrolase I BBEV_1436 PF02081 Tryptophan RNA-binding attenuator protein BBEV_1437 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BBEV_1438 PF01209 ubiE/COQ5 methyltransferase family BBEV_1439 PF01040 UbiA prenyltransferase family BBEV_1440 PF02621 Menaquinone biosynthesis BBEV_1441 PF00348 Polyprenyl synthetase BBEV_1442 PF00334 Nucleoside diphosphate kinase BBEV_1443 PF01739 CheR methyltransferase, SAM binding domain BBEV_1443 PF03705 CheR methyltransferase, all-alpha domain BBEV_1444 PF01264 Chorismate synthase BBEV_1445 PF01761 3-dehydroquinate synthase BBEV_1446 PF07736 Chorismate mutase type I BBEV_1447 PF04715 Anthranilate synthase component I, N terminal region BBEV_1447 PF00425 chorismate binding enzyme BBEV_1448 PF00591 Glycosyl transferase family, a/b domain BBEV_1448 PF02885 Glycosyl transferase family, helical bundle domain BBEV_1449 PF00218 Indole-3-glycerol phosphate synthase BBEV_1450 PF00291 Pyridoxal-phosphate dependent enzyme BBEV_1451 PF00290 Tryptophan synthase alpha chain BBEV_1452 PF00155 Aminotransferase class I and II BBEV_1453 PF01842 ACT domain BBEV_1453 PF02153 Prephenate dehydrogenase BBEV_1454 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BBEV_1456 PF08864 UPF0302 domain BBEV_1456 PF08858 IDEAL domain BBEV_1457 PF10673 Protein of unknown function (DUF2487) BBEV_1458 PF00355 Rieske [2Fe-2S] domain BBEV_1459 PF00033 Cytochrome b/b6/petB BBEV_1460 PF00032 Cytochrome b(C-terminal)/b6/petD BBEV_1460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BBEV_1461 PF07187 Protein of unknown function (DUF1405) BBEV_1462 PF04298 Putative neutral zinc metallopeptidase BBEV_1463 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BBEV_1463 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BBEV_1464 PF03819 MazG nucleotide pyrophosphohydrolase domain BBEV_1465 PF01113 Dihydrodipicolinate reductase, N-terminus BBEV_1465 PF05173 Dihydrodipicolinate reductase, C-terminus BBEV_1466 PF02142 MGS-like domain BBEV_1467 PF02585 GlcNAc-PI de-N-acetylase BBEV_1468 PF00534 Glycosyl transferases group 1 BBEV_1468 PF13439 Glycosyltransferase Family 4 BBEV_1469 PF12627 Probable RNA and SrmB- binding site of polymerase A BBEV_1469 PF01743 Poly A polymerase head domain BBEV_1469 PF13735 tRNA nucleotidyltransferase domain 2 putative BBEV_1470 PF08279 HTH domain BBEV_1470 PF03099 Biotin/lipoate A/B protein ligase family BBEV_1470 PF02237 Biotin protein ligase C terminal domain BBEV_1471 PF02548 Ketopantoate hydroxymethyltransferase BBEV_1472 PF02569 Pantoate-beta-alanine ligase BBEV_1473 PF02261 Aspartate decarboxylase BBEV_1474 PF04851 Type III restriction enzyme, res subunit BBEV_1474 PF00929 Exonuclease BBEV_1474 PF13307 Helicase C-terminal domain BBEV_1475 PF01979 Amidohydrolase family BBEV_1477 PF00155 Aminotransferase class I and II BBEV_1478 PF01336 OB-fold nucleic acid binding domain BBEV_1478 PF00152 tRNA synthetases class II (D, K and N) BBEV_1479 PF07261 Replication initiation and membrane attachment BBEV_1480 PF00633 Helix-hairpin-helix motif BBEV_1480 PF00730 HhH-GPD superfamily base excision DNA repair protein BBEV_1480 PF10576 Iron-sulfur binding domain of endonuclease III BBEV_1481 PF00912 Transglycosylase BBEV_1481 PF00905 Penicillin binding protein transpeptidase domain BBEV_1482 PF03838 Recombination protein U BBEV_1486 PF00857 Isochorismatase family BBEV_1488 PF08534 Redoxin BBEV_1490 PF13769 Virulence factor BBEV_1490 PF08712 Scaffold protein Nfu/NifU N terminal BBEV_1492 PF03703 Bacterial PH domain BBEV_1493 PF03703 Bacterial PH domain BBEV_1497 PF00990 Diguanylate cyclase, GGDEF domain BBEV_1500 PF00781 Diacylglycerol kinase catalytic domain BBEV_1502 PF02416 mttA/Hcf106 family BBEV_1503 PF00902 Sec-independent protein translocase protein (TatC) BBEV_1505 PF01712 Deoxynucleoside kinase BBEV_1506 PF01712 Deoxynucleoside kinase BBEV_1507 PF02645 Uncharacterised protein, DegV family COG1307 BBEV_1510 PF01734 Patatin-like phospholipase BBEV_1512 PF07690 Major Facilitator Superfamily BBEV_1513 PF07690 Major Facilitator Superfamily BBEV_1515 PF13419 Haloacid dehalogenase-like hydrolase BBEV_1516 PF03633 Glycosyl hydrolase family 65, C-terminal domain BBEV_1516 PF03636 Glycosyl hydrolase family 65, N-terminal domain BBEV_1516 PF03632 Glycosyl hydrolase family 65 central catalytic domain BBEV_1517 PF00171 Aldehyde dehydrogenase family BBEV_1518 PF13193 AMP-binding enzyme C-terminal domain BBEV_1518 PF00501 AMP-binding enzyme BBEV_1520 PF00206 Lyase BBEV_1520 PF10415 Fumarase C C-terminus BBEV_1523 PF01625 Peptide methionine sulfoxide reductase BBEV_1524 PF01641 SelR domain BBEV_1525 PF00768 D-alanyl-D-alanine carboxypeptidase BBEV_1525 PF07943 Penicillin-binding protein 5, C-terminal domain BBEV_1526 PF07859 alpha/beta hydrolase fold BBEV_1527 PF00155 Aminotransferase class I and II BBEV_1528 PF02779 Transketolase, pyrimidine binding domain BBEV_1528 PF00676 Dehydrogenase E1 component BBEV_1528 PF16870 2-oxoglutarate dehydrogenase C-terminal BBEV_1529 PF00364 Biotin-requiring enzyme BBEV_1529 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BBEV_1529 PF02817 e3 binding domain BBEV_1530 PF00350 Dynamin family BBEV_1533 PF18277 AbrB C-terminal domain BBEV_1533 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BBEV_1536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BBEV_1536 PF03466 LysR substrate binding domain BBEV_1537 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_1537 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BBEV_1538 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_1538 PF00512 His Kinase A (phospho-acceptor) domain BBEV_1539 PF03050 Transposase IS66 family BBEV_1539 PF13817 IS66 C-terminal element BBEV_1539 PF13007 Transposase C of IS166 homeodomain BBEV_1539 PF13005 zinc-finger binding domain of transposase IS66 BBEV_1547 PF17853 GGDEF-like domain BBEV_1547 PF13556 PucR C-terminal helix-turn-helix domain BBEV_1547 PF07905 Purine catabolism regulatory protein-like family BBEV_1548 PF00557 Metallopeptidase family M24 BBEV_1548 PF01321 Creatinase/Prolidase N-terminal domain BBEV_1549 PF01053 Cys/Met metabolism PLP-dependent enzyme BBEV_1550 PF03447 Homoserine dehydrogenase, NAD binding domain BBEV_1550 PF00742 Homoserine dehydrogenase BBEV_1551 PF00171 Aldehyde dehydrogenase family BBEV_1552 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_1552 PF00005 ABC transporter BBEV_1553 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_1553 PF00005 ABC transporter BBEV_1554 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BBEV_1557 PF07690 Major Facilitator Superfamily BBEV_1559 PF01053 Cys/Met metabolism PLP-dependent enzyme BBEV_1560 PF00563 EAL domain BBEV_1560 PF05231 MASE1 BBEV_1561 PF05362 Lon protease (S16) C-terminal proteolytic domain BBEV_1561 PF13654 AAA domain BBEV_1562 PF02028 BCCT, betaine/carnitine/choline family transporter BBEV_1564 PF00781 Diacylglycerol kinase catalytic domain BBEV_1565 PF00291 Pyridoxal-phosphate dependent enzyme BBEV_1567 PF00990 Diguanylate cyclase, GGDEF domain BBEV_1567 PF00072 Response regulator receiver domain BBEV_1568 PF11798 IMS family HHH motif BBEV_1568 PF00817 impB/mucB/samB family BBEV_1568 PF11799 impB/mucB/samB family C-terminal domain BBEV_1574 PF13732 Domain of unknown function (DUF4162) BBEV_1574 PF00005 ABC transporter BBEV_1576 PF00133 tRNA synthetases class I (I, L, M and V) BBEV_1576 PF10458 Valyl tRNA synthetase tRNA binding arm BBEV_1576 PF08264 Anticodon-binding domain of tRNA BBEV_1577 PF01063 Amino-transferase class IV BBEV_1578 PF13726 Na+-H+ antiporter family BBEV_1578 PF03553 Na+/H+ antiporter family BBEV_1581 PF02566 OsmC-like protein BBEV_1582 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BBEV_1582 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BBEV_1583 PF04324 BFD-like [2Fe-2S] binding domain BBEV_1583 PF01266 FAD dependent oxidoreductase BBEV_1585 PF02754 Cysteine-rich domain BBEV_1585 PF13183 4Fe-4S dicluster domain BBEV_1588 PF01425 Amidase BBEV_1591 PF00892 EamA-like transporter family BBEV_1592 PF04055 Radical SAM superfamily BBEV_1595 PF14572 Phosphoribosyl synthetase-associated domain BBEV_1595 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BBEV_1596 PF04055 Radical SAM superfamily BBEV_1597 PF01228 Glycine radical BBEV_1597 PF02901 Pyruvate formate lyase-like BBEV_1599 PF00701 Dihydrodipicolinate synthetase family BBEV_1600 PF01266 FAD dependent oxidoreductase BBEV_1601 PF09335 SNARE associated Golgi protein BBEV_1602 PF06081 Aromatic acid exporter family member 1 BBEV_1603 PF12705 PD-(D/E)XK nuclease superfamily BBEV_1603 PF13361 UvrD-like helicase C-terminal domain BBEV_1604 PF13361 UvrD-like helicase C-terminal domain BBEV_1604 PF00580 UvrD/REP helicase N-terminal domain BBEV_1604 PF12705 PD-(D/E)XK nuclease superfamily BBEV_1606 PF00005 ABC transporter BBEV_1606 PF12848 ABC transporter BBEV_1607 PF00465 Iron-containing alcohol dehydrogenase BBEV_1607 PF00171 Aldehyde dehydrogenase family BBEV_1610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BBEV_1610 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_1611 PF02566 OsmC-like protein BBEV_1612 PF01625 Peptide methionine sulfoxide reductase BBEV_1614 PF13091 PLD-like domain BBEV_1614 PF13396 Phospholipase_D-nuclease N-terminal BBEV_1615 PF02774 Semialdehyde dehydrogenase, dimerisation domain BBEV_1615 PF01118 Semialdehyde dehydrogenase, NAD binding domain BBEV_1616 PF01960 ArgJ family BBEV_1617 PF00696 Amino acid kinase family BBEV_1618 PF00202 Aminotransferase class-III BBEV_1619 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BBEV_1619 PF00117 Glutamine amidotransferase class-I BBEV_1620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BBEV_1620 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BBEV_1621 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BBEV_1621 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BBEV_1622 PF00764 Arginosuccinate synthase BBEV_1623 PF14698 Argininosuccinate lyase C-terminal BBEV_1623 PF00206 Lyase BBEV_1625 PF01063 Amino-transferase class IV BBEV_1628 PF01367 5'-3' exonuclease, C-terminal SAM fold BBEV_1628 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BBEV_1631 PF00589 Phage integrase family BBEV_1632 PF05145 Transition state regulatory protein AbrB BBEV_1633 PF06339 Ectoine synthase BBEV_1634 PF00202 Aminotransferase class-III BBEV_1635 PF00583 Acetyltransferase (GNAT) family BBEV_1637 PF00171 Aldehyde dehydrogenase family BBEV_1639 PF00696 Amino acid kinase family BBEV_1639 PF01472 PUA domain BBEV_1641 PF05167 Uncharacterised ACR (DUF711) BBEV_1644 PF01757 Acyltransferase family BBEV_1646 PF00909 Ammonium Transporter Family BBEV_1648 PF11490 DNA polymerase III polC-type N-terminus II BBEV_1648 PF07733 Bacterial DNA polymerase III alpha NTPase domain BBEV_1648 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BBEV_1648 PF01336 OB-fold nucleic acid binding domain BBEV_1648 PF14579 Helix-hairpin-helix motif BBEV_1648 PF02811 PHP domain BBEV_1648 PF00929 Exonuclease BBEV_1648 PF14480 DNA polymerase III polC-type N-terminus I BBEV_1649 PF13685 Iron-containing alcohol dehydrogenase BBEV_1651 PF00585 C-terminal regulatory domain of Threonine dehydratase BBEV_1651 PF00291 Pyridoxal-phosphate dependent enzyme BBEV_1652 PF13509 S1 domain BBEV_1652 PF17783 CvfB-like winged helix domain BBEV_1657 PF12724 Flavodoxin domain BBEV_1658 PF02675 S-adenosylmethionine decarboxylase BBEV_1662 PF03989 DNA gyrase C-terminal domain, beta-propeller BBEV_1662 PF00521 DNA gyrase/topoisomerase IV, subunit A BBEV_1663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_1663 PF00204 DNA gyrase B BBEV_1663 PF00986 DNA gyrase B subunit, carboxyl terminus BBEV_1663 PF01751 Toprim domain BBEV_1664 PF13380 CoA binding domain BBEV_1665 PF00582 Universal stress protein family BBEV_1666 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_1667 PF00571 CBS domain BBEV_1667 PF00005 ABC transporter BBEV_1668 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BBEV_1670 PF06463 Molybdenum Cofactor Synthesis C BBEV_1670 PF04055 Radical SAM superfamily BBEV_1671 PF02926 THUMP domain BBEV_1671 PF01170 Putative RNA methylase family UPF0020 BBEV_1672 PF13456 Reverse transcriptase-like BBEV_1673 PF05103 DivIVA protein BBEV_1674 PF06908 YspA SLOG family BBEV_1675 PF07733 Bacterial DNA polymerase III alpha NTPase domain BBEV_1675 PF11490 DNA polymerase III polC-type N-terminus II BBEV_1675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BBEV_1675 PF14579 Helix-hairpin-helix motif BBEV_1675 PF02811 PHP domain BBEV_1675 PF00929 Exonuclease BBEV_1675 PF14480 DNA polymerase III polC-type N-terminus I BBEV_1677 PF13482 RNase_H superfamily BBEV_1678 PF00270 DEAD/DEAH box helicase BBEV_1678 PF09369 Domain of unknown function (DUF1998) BBEV_1678 PF00271 Helicase conserved C-terminal domain BBEV_1680 PF07690 Major Facilitator Superfamily BBEV_1683 PF01966 HD domain BBEV_1685 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BBEV_1685 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BBEV_1686 PF00072 Response regulator receiver domain BBEV_1686 PF01584 CheW-like domain BBEV_1689 PF00005 ABC transporter BBEV_1690 PF00392 Bacterial regulatory proteins, gntR family BBEV_1692 PF00005 ABC transporter BBEV_1693 PF11941 Domain of unknown function (DUF3459) BBEV_1693 PF00128 Alpha amylase, catalytic domain BBEV_1694 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BBEV_1697 PF14183 YwpF-like protein BBEV_1701 PF12832 MFS_1 like family BBEV_1702 PF00563 EAL domain BBEV_1702 PF10388 EAL-domain associated signalling protein domain BBEV_1703 PF02811 PHP domain BBEV_1704 PF02540 NAD synthase BBEV_1707 PF17866 AAA lid domain BBEV_1707 PF00004 ATPase family associated with various cellular activities (AAA) BBEV_1709 PF00694 Aconitase C-terminal domain BBEV_1709 PF00330 Aconitase family (aconitate hydratase) BBEV_1710 PF12390 Selenocysteine synthase N terminal BBEV_1710 PF03841 L-seryl-tRNA selenium transferase BBEV_1713 PF00009 Elongation factor Tu GTP binding domain BBEV_1713 PF03144 Elongation factor Tu domain 2 BBEV_1713 PF09105 Elongation factor SelB, winged helix BBEV_1713 PF09106 Elongation factor SelB, winged helix BBEV_1713 PF09107 Elongation factor SelB, winged helix BBEV_1715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_1715 PF05227 CHASE3 domain BBEV_1715 PF00672 HAMP domain BBEV_1716 PF04055 Radical SAM superfamily BBEV_1717 PF04055 Radical SAM superfamily BBEV_1719 PF09313 Domain of unknown function (DUF1971) BBEV_1719 PF03848 Tellurite resistance protein TehB BBEV_1720 PF00672 HAMP domain BBEV_1720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_1720 PF12729 Four helix bundle sensory module for signal transduction BBEV_1722 PF08245 Mur ligase middle domain BBEV_1722 PF02875 Mur ligase family, glutamate ligase domain BBEV_1722 PF01225 Mur ligase family, catalytic domain BBEV_1723 PF01820 D-ala D-ala ligase N-terminus BBEV_1723 PF07478 D-ala D-ala ligase C-terminus BBEV_1727 PF11084 Protein of unknown function (DUF2621) BBEV_1728 PF07301 Protein of unknown function (DUF1453) BBEV_1730 PF00578 AhpC/TSA family BBEV_1731 PF00403 Heavy-metal-associated domain BBEV_1732 PF00403 Heavy-metal-associated domain BBEV_1733 PF02583 Metal-sensitive transcriptional repressor BBEV_1735 PF03672 Uncharacterised protein family (UPF0154) BBEV_1736 PF02779 Transketolase, pyrimidine binding domain BBEV_1736 PF02780 Transketolase, C-terminal domain BBEV_1736 PF00456 Transketolase, thiamine diphosphate binding domain BBEV_1737 PF05979 Bacterial protein of unknown function (DUF896) BBEV_1738 PF00239 Resolvase, N terminal domain BBEV_1739 PF01476 LysM domain BBEV_1740 PF01726 LexA DNA binding domain BBEV_1740 PF00717 Peptidase S24-like BBEV_1742 PF00120 Glutamine synthetase, catalytic domain BBEV_1742 PF03951 Glutamine synthetase, beta-Grasp domain BBEV_1743 PF06838 Methionine gamma-lyase BBEV_1745 PF17209 Hfq protein BBEV_1747 PF04445 Putative SAM-dependent methyltransferase BBEV_1748 PF08676 MutL C terminal dimerisation domain BBEV_1748 PF01119 DNA mismatch repair protein, C-terminal domain BBEV_1749 PF00488 MutS domain V BBEV_1749 PF05190 MutS family domain IV BBEV_1749 PF01624 MutS domain I BBEV_1749 PF05188 MutS domain II BBEV_1749 PF05192 MutS domain III BBEV_1750 PF06133 Control of competence regulator ComK, YlbF/YmcA BBEV_1751 PF00919 Uncharacterized protein family UPF0004 BBEV_1751 PF04055 Radical SAM superfamily BBEV_1751 PF01938 TRAM domain BBEV_1752 PF00155 Aminotransferase class I and II BBEV_1753 PF00107 Zinc-binding dehydrogenase BBEV_1753 PF08240 Alcohol dehydrogenase GroES-like domain BBEV_1754 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BBEV_1755 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BBEV_1755 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BBEV_1755 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BBEV_1757 PF04232 Stage V sporulation protein S (SpoVS) BBEV_1758 PF13277 YmdB-like protein BBEV_1759 PF01966 HD domain BBEV_1759 PF00013 KH domain BBEV_1759 PF12072 Domain of unknown function (DUF3552) BBEV_1760 PF00154 recA bacterial DNA recombination protein BBEV_1761 PF00270 DEAD/DEAH box helicase BBEV_1761 PF00271 Helicase conserved C-terminal domain BBEV_1762 PF00994 Probable molybdopterin binding domain BBEV_1762 PF02464 Competence-damaged protein BBEV_1762 PF18146 Damage-inducible protein CinA KH domain BBEV_1763 PF01066 CDP-alcohol phosphatidyltransferase BBEV_1764 PF13464 Domain of unknown function (DUF4115) BBEV_1765 PF11868 Protein of unknown function (DUF3388) BBEV_1767 PF05193 Peptidase M16 inactive domain BBEV_1767 PF00675 Insulinase (Peptidase family M16) BBEV_1768 PF05193 Peptidase M16 inactive domain BBEV_1769 PF00392 Bacterial regulatory proteins, gntR family BBEV_1769 PF07702 UTRA domain BBEV_1770 PF01580 FtsK/SpoIIIE family BBEV_1770 PF09397 Ftsk gamma domain BBEV_1770 PF17854 FtsK alpha domain BBEV_1771 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BBEV_1771 PF00753 Metallo-beta-lactamase superfamily BBEV_1771 PF17770 Ribonuclease J C-terminal domain BBEV_1772 PF00701 Dihydrodipicolinate synthetase family BBEV_1773 PF00696 Amino acid kinase family BBEV_1773 PF13840 ACT domain BBEV_1774 PF02774 Semialdehyde dehydrogenase, dimerisation domain BBEV_1774 PF01118 Semialdehyde dehydrogenase, NAD binding domain BBEV_1775 PF00675 Insulinase (Peptidase family M16) BBEV_1775 PF05193 Peptidase M16 inactive domain BBEV_1776 PF00013 KH domain BBEV_1776 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BBEV_1776 PF01138 3' exoribonuclease family, domain 1 BBEV_1776 PF00575 S1 RNA binding domain BBEV_1776 PF03725 3' exoribonuclease family, domain 2 BBEV_1777 PF00312 Ribosomal protein S15 BBEV_1778 PF06574 FAD synthetase BBEV_1778 PF01687 Riboflavin kinase BBEV_1779 PF16198 tRNA pseudouridylate synthase B C-terminal domain BBEV_1779 PF01509 TruB family pseudouridylate synthase (N terminal domain) BBEV_1780 PF02033 Ribosome-binding factor A BBEV_1781 PF04456 Protein of unknown function (DUF503) BBEV_1782 PF00009 Elongation factor Tu GTP binding domain BBEV_1782 PF11987 Translation-initiation factor 2 BBEV_1782 PF04760 Translation initiation factor IF-2, N-terminal region BBEV_1784 PF04296 Protein of unknown function (DUF448) BBEV_1785 PF00575 S1 RNA binding domain BBEV_1785 PF13184 NusA-like KH domain BBEV_1785 PF08529 NusA N-terminal domain BBEV_1786 PF02576 RimP N-terminal domain BBEV_1786 PF17384 RimP C-terminal SH3 domain BBEV_1787 PF11490 DNA polymerase III polC-type N-terminus II BBEV_1787 PF02811 PHP domain BBEV_1787 PF14579 Helix-hairpin-helix motif BBEV_1787 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BBEV_1787 PF07733 Bacterial DNA polymerase III alpha NTPase domain BBEV_1787 PF14480 DNA polymerase III polC-type N-terminus I BBEV_1787 PF00929 Exonuclease BBEV_1788 PF04073 Aminoacyl-tRNA editing domain BBEV_1788 PF03129 Anticodon binding domain BBEV_1788 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BBEV_1789 PF02163 Peptidase family M50 BBEV_1789 PF17820 PDZ domain BBEV_1790 PF13288 DXP reductoisomerase C-terminal domain BBEV_1790 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BBEV_1790 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BBEV_1792 PF01255 Putative undecaprenyl diphosphate synthase BBEV_1793 PF01765 Ribosome recycling factor BBEV_1794 PF00696 Amino acid kinase family BBEV_1795 PF00889 Elongation factor TS BBEV_1796 PF00318 Ribosomal protein S2 BBEV_1800 PF04542 Sigma-70 region 2 BBEV_1800 PF04539 Sigma-70 region 3 BBEV_1800 PF04545 Sigma-70, region 4 BBEV_1802 PF03975 CheD chemotactic sensory transduction BBEV_1803 PF04509 CheC-like family BBEV_1804 PF01584 CheW-like domain BBEV_1805 PF01584 CheW-like domain BBEV_1805 PF02895 Signal transducing histidine kinase, homodimeric domain BBEV_1805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_1805 PF01627 Hpt domain BBEV_1805 PF07194 P2 response regulator binding domain BBEV_1806 PF00072 Response regulator receiver domain BBEV_1806 PF01339 CheB methylesterase BBEV_1807 PF10609 NUBPL iron-transfer P-loop NTPase BBEV_1808 PF00448 SRP54-type protein, GTPase domain BBEV_1809 PF00771 FHIPEP family BBEV_1810 PF01312 FlhB HrpN YscU SpaS Family BBEV_1811 PF01311 Bacterial export proteins, family 1 BBEV_1812 PF01313 Bacterial export proteins, family 3 BBEV_1813 PF00813 FliP family BBEV_1814 PF04347 Flagellar biosynthesis protein, FliO BBEV_1815 PF00072 Response regulator receiver domain BBEV_1816 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BBEV_1816 PF04509 CheC-like family BBEV_1817 PF02154 Flagellar motor switch protein FliM BBEV_1817 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BBEV_1819 PF06289 Flagellar and Swarming motility proteins BBEV_1820 PF07559 Flagellar basal body protein FlaE BBEV_1820 PF00460 Flagella basal body rod protein BBEV_1820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BBEV_1822 PF03963 Flagellar hook capping protein - N-terminal region BBEV_1826 PF18269 T3SS EscN ATPase C-terminal domain BBEV_1826 PF02874 ATP synthase alpha/beta family, beta-barrel domain BBEV_1826 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BBEV_1827 PF02108 Flagellar assembly protein FliH BBEV_1828 PF14841 FliG middle domain BBEV_1828 PF01706 FliG C-terminal domain BBEV_1828 PF14842 FliG N-terminal domain BBEV_1829 PF08345 Flagellar M-ring protein C-terminal BBEV_1829 PF01514 Secretory protein of YscJ/FliF family BBEV_1830 PF02049 Flagellar hook-basal body complex protein FliE BBEV_1831 PF00460 Flagella basal body rod protein BBEV_1831 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BBEV_1832 PF00460 Flagella basal body rod protein BBEV_1833 PF06018 CodY GAF-like domain BBEV_1833 PF08222 CodY helix-turn-helix domain BBEV_1834 PF07724 AAA domain (Cdc48 subfamily) BBEV_1834 PF10431 C-terminal, D2-small domain, of ClpB protein BBEV_1835 PF00227 Proteasome subunit BBEV_1836 PF00589 Phage integrase family BBEV_1836 PF02899 Phage integrase, N-terminal SAM-like domain BBEV_1837 PF01131 DNA topoisomerase BBEV_1837 PF01751 Toprim domain BBEV_1837 PF01396 Topoisomerase DNA binding C4 zinc finger BBEV_1838 PF02481 DNA recombination-mediator protein A BBEV_1839 PF00549 CoA-ligase BBEV_1839 PF02629 CoA binding domain BBEV_1840 PF00549 CoA-ligase BBEV_1840 PF08442 ATP-grasp domain BBEV_1841 PF01312 FlhB HrpN YscU SpaS Family BBEV_1843 PF01351 Ribonuclease HII BBEV_1844 PF01926 50S ribosome-binding GTPase BBEV_1845 PF10502 Signal peptidase, peptidase S26 BBEV_1846 PF01245 Ribosomal protein L19 BBEV_1847 PF01746 tRNA (Guanine-1)-methyltransferase BBEV_1848 PF05239 PRC-barrel domain BBEV_1848 PF01782 RimM N-terminal domain BBEV_1851 PF00886 Ribosomal protein S16 BBEV_1852 PF02881 SRP54-type protein, helical bundle domain BBEV_1852 PF02978 Signal peptide binding domain BBEV_1852 PF00448 SRP54-type protein, GTPase domain BBEV_1853 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BBEV_1854 PF00448 SRP54-type protein, GTPase domain BBEV_1854 PF02881 SRP54-type protein, helical bundle domain BBEV_1855 PF02463 RecF/RecN/SMC N terminal domain BBEV_1855 PF06470 SMC proteins Flexible Hinge Domain BBEV_1856 PF06569 Protein of unknown function (DUF1128) BBEV_1857 PF08810 Kinase associated protein B BBEV_1858 PF00035 Double-stranded RNA binding motif BBEV_1858 PF14622 Ribonuclease-III-like BBEV_1859 PF00550 Phosphopantetheine attachment site BBEV_1861 PF00698 Acyl transferase domain BBEV_1862 PF02504 Fatty acid synthesis protein BBEV_1863 PF03061 Thioesterase superfamily BBEV_1864 PF00271 Helicase conserved C-terminal domain BBEV_1864 PF00270 DEAD/DEAH box helicase BBEV_1864 PF17191 RecG wedge domain BBEV_1865 PF03313 Serine dehydratase alpha chain BBEV_1866 PF03315 Serine dehydratase beta chain BBEV_1866 PF01842 ACT domain BBEV_1867 PF02645 Uncharacterised protein, DegV family COG1307 BBEV_1868 PF13684 Dihydroxyacetone kinase family BBEV_1868 PF02734 DAK2 domain BBEV_1869 PF03780 Asp23 family, cell envelope-related function BBEV_1870 PF00830 Ribosomal L28 family BBEV_1871 PF04263 Thiamin pyrophosphokinase, catalytic domain BBEV_1871 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BBEV_1872 PF09515 Thiamine transporter protein (Thia_YuaJ) BBEV_1873 PF00834 Ribulose-phosphate 3 epimerase family BBEV_1874 PF03193 RsgA GTPase BBEV_1874 PF16745 RsgA N-terminal domain BBEV_1875 PF03793 PASTA domain BBEV_1875 PF00069 Protein kinase domain BBEV_1877 PF01029 NusB family BBEV_1877 PF01189 16S rRNA methyltransferase RsmB/F BBEV_1878 PF00551 Formyl transferase BBEV_1878 PF02911 Formyl transferase, C-terminal domain BBEV_1879 PF00271 Helicase conserved C-terminal domain BBEV_1879 PF17764 3′ DNA-binding domain (3′BD) BBEV_1879 PF18074 Primosomal protein N C-terminal domain BBEV_1879 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BBEV_1879 PF04851 Type III restriction enzyme, res subunit BBEV_1880 PF02441 Flavoprotein BBEV_1880 PF04127 DNA / pantothenate metabolism flavoprotein BBEV_1881 PF01192 RNA polymerase Rpb6 BBEV_1882 PF00625 Guanylate kinase BBEV_1883 PF04025 Domain of unknown function (DUF370) BBEV_1884 PF08340 Domain of unknown function (DUF1732) BBEV_1884 PF03755 YicC-like family, N-terminal region BBEV_1886 PF00005 ABC transporter BBEV_1886 PF00664 ABC transporter transmembrane region BBEV_1887 PF00664 ABC transporter transmembrane region BBEV_1887 PF00005 ABC transporter BBEV_1888 PF00156 Phosphoribosyl transferase domain BBEV_1889 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BBEV_1890 PF01180 Dihydroorotate dehydrogenase BBEV_1891 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BBEV_1891 PF00970 Oxidoreductase FAD-binding domain BBEV_1891 PF00175 Oxidoreductase NAD-binding domain BBEV_1892 PF02142 MGS-like domain BBEV_1892 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BBEV_1892 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BBEV_1893 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BBEV_1893 PF00117 Glutamine amidotransferase class-I BBEV_1894 PF01979 Amidohydrolase family BBEV_1895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BBEV_1895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BBEV_1896 PF00860 Permease family BBEV_1897 PF00156 Phosphoribosyl transferase domain BBEV_1898 PF01479 S4 domain BBEV_1898 PF00849 RNA pseudouridylate synthase BBEV_1899 PF01252 Signal peptidase (SPase) II BBEV_1900 PF06827 Zinc finger found in FPG and IleRS BBEV_1900 PF08264 Anticodon-binding domain of tRNA BBEV_1900 PF00133 tRNA synthetases class I (I, L, M and V) BBEV_1901 PF05103 DivIVA protein BBEV_1902 PF17774 Putative RNA-binding domain in YlmH BBEV_1902 PF01479 S4 domain BBEV_1903 PF02325 YGGT family BBEV_1904 PF04472 Cell division protein SepF BBEV_1905 PF01168 Alanine racemase, N-terminal domain BBEV_1906 PF00091 Tubulin/FtsZ family, GTPase domain BBEV_1906 PF12327 FtsZ family, C-terminal domain BBEV_1907 PF02491 SHS2 domain inserted in FTSA BBEV_1908 PF06947 Protein of unknown function (DUF1290) BBEV_1909 PF05949 Bacterial protein of unknown function (DUF881) BBEV_1910 PF05949 Bacterial protein of unknown function (DUF881) BBEV_1911 PF08478 POTRA domain, FtsQ-type BBEV_1911 PF03799 Cell division protein FtsQ BBEV_1912 PF01565 FAD binding domain BBEV_1912 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BBEV_1913 PF03033 Glycosyltransferase family 28 N-terminal domain BBEV_1913 PF04101 Glycosyltransferase family 28 C-terminal domain BBEV_1914 PF02875 Mur ligase family, glutamate ligase domain BBEV_1914 PF08245 Mur ligase middle domain BBEV_1915 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BBEV_1915 PF00953 Glycosyl transferase family 4 BBEV_1916 PF08245 Mur ligase middle domain BBEV_1916 PF02875 Mur ligase family, glutamate ligase domain BBEV_1916 PF01225 Mur ligase family, catalytic domain BBEV_1917 PF01225 Mur ligase family, catalytic domain BBEV_1917 PF02875 Mur ligase family, glutamate ligase domain BBEV_1917 PF08245 Mur ligase middle domain BBEV_1920 PF01795 MraW methylase family BBEV_1921 PF02381 MraZ protein, putative antitoxin-like BBEV_1922 PF10079 Bacillithiol biosynthesis BshC BBEV_1924 PF08546 Ketopantoate reductase PanE/ApbA C terminal BBEV_1924 PF02558 Ketopantoate reductase PanE/ApbA BBEV_1925 PF00583 Acetyltransferase (GNAT) family BBEV_1926 PF00378 Enoyl-CoA hydratase/isomerase BBEV_1927 PF02620 Large ribosomal RNA subunit accumulation protein YceD BBEV_1928 PF05636 HIGH Nucleotidyl Transferase BBEV_1929 PF13180 PDZ domain BBEV_1929 PF05362 Lon protease (S16) C-terminal proteolytic domain BBEV_1930 PF01467 Cytidylyltransferase-like BBEV_1932 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BBEV_1933 PF06133 Control of competence regulator ComK, YlbF/YmcA BBEV_1934 PF08868 YugN-like family BBEV_1939 PF00115 Cytochrome C and Quinol oxidase polypeptide I BBEV_1943 PF00210 Ferritin-like domain BBEV_1944 PF07408 Protein of unknown function (DUF1507) BBEV_1947 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BBEV_1948 PF14036 YlaH-like protein BBEV_1950 PF13276 HTH-like domain BBEV_1950 PF13333 Integrase core domain BBEV_1950 PF00665 Integrase core domain BBEV_1951 PF00459 Inositol monophosphatase family BBEV_1953 PF06335 Protein of unknown function (DUF1054) BBEV_1954 PF05256 Uncharacterised protein family (UPF0223) BBEV_1955 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BBEV_1955 PF01276 Orn/Lys/Arg decarboxylase, major domain BBEV_1960 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_1960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BBEV_1961 PF02817 e3 binding domain BBEV_1961 PF00364 Biotin-requiring enzyme BBEV_1961 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BBEV_1962 PF02780 Transketolase, C-terminal domain BBEV_1962 PF02779 Transketolase, pyrimidine binding domain BBEV_1963 PF00676 Dehydrogenase E1 component BBEV_1966 PF01327 Polypeptide deformylase BBEV_1968 PF00753 Metallo-beta-lactamase superfamily BBEV_1968 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BBEV_1968 PF17770 Ribonuclease J C-terminal domain BBEV_1969 PF02254 TrkA-N domain BBEV_1969 PF02080 TrkA-C domain BBEV_1970 PF00924 Mechanosensitive ion channel BBEV_1971 PF01546 Peptidase family M20/M25/M40 BBEV_1971 PF07687 Peptidase dimerisation domain BBEV_1972 PF14602 Hexapeptide repeat of succinyl-transferase BBEV_1972 PF00132 Bacterial transferase hexapeptide (six repeats) BBEV_1972 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BBEV_1973 PF00072 Response regulator receiver domain BBEV_1975 PF00924 Mechanosensitive ion channel BBEV_1976 PF02080 TrkA-C domain BBEV_1976 PF02254 TrkA-N domain BBEV_1977 PF00005 ABC transporter BBEV_1978 PF00881 Nitroreductase family BBEV_1979 PF02664 S-Ribosylhomocysteinase (LuxS) BBEV_1980 PF13673 Acetyltransferase (GNAT) domain BBEV_1982 PF04608 Phosphatidylglycerophosphatase A BBEV_1983 PF00270 DEAD/DEAH box helicase BBEV_1983 PF00271 Helicase conserved C-terminal domain BBEV_1984 PF01883 Iron-sulfur cluster assembly protein BBEV_1986 PF00248 Aldo/keto reductase family BBEV_1987 PF01554 MatE BBEV_1991 PF08281 Sigma-70, region 4 BBEV_1991 PF04542 Sigma-70 region 2 BBEV_1992 PF02028 BCCT, betaine/carnitine/choline family transporter BBEV_1993 PF00463 Isocitrate lyase family BBEV_1994 PF01274 Malate synthase BBEV_1995 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BBEV_1995 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_1996 PF01645 Conserved region in glutamate synthase BBEV_1996 PF00310 Glutamine amidotransferases class-II BBEV_1996 PF01493 GXGXG motif BBEV_1996 PF04898 Glutamate synthase central domain BBEV_1999 PF03707 Bacterial signalling protein N terminal repeat BBEV_1999 PF00990 Diguanylate cyclase, GGDEF domain BBEV_1999 PF00563 EAL domain BBEV_2000 PF00563 EAL domain BBEV_2000 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2000 PF03707 Bacterial signalling protein N terminal repeat BBEV_2004 PF01551 Peptidase family M23 BBEV_2004 PF08525 Opacity-associated protein A N-terminal motif BBEV_2004 PF01476 LysM domain BBEV_2005 PF03358 NADPH-dependent FMN reductase BBEV_2006 PF07690 Major Facilitator Superfamily BBEV_2009 PF00849 RNA pseudouridylate synthase BBEV_2010 PF04607 Region found in RelA / SpoT proteins BBEV_2012 PF10145 Phage-related minor tail protein BBEV_2012 PF01464 Transglycosylase SLT domain BBEV_2012 PF01551 Peptidase family M23 BBEV_2013 PF01152 Bacterial-like globin BBEV_2015 PF08439 Oligopeptidase F BBEV_2015 PF01432 Peptidase family M3 BBEV_2018 PF03960 ArsC family BBEV_2019 PF13508 Acetyltransferase (GNAT) domain BBEV_2021 PF01966 HD domain BBEV_2022 PF01699 Sodium/calcium exchanger protein BBEV_2023 PF00579 tRNA synthetases class I (W and Y) BBEV_2024 PF00325 Bacterial regulatory proteins, crp family BBEV_2024 PF00027 Cyclic nucleotide-binding domain BBEV_2025 PF03816 Cell envelope-related transcriptional attenuator domain BBEV_2026 PF00109 Beta-ketoacyl synthase, N-terminal domain BBEV_2026 PF02801 Beta-ketoacyl synthase, C-terminal domain BBEV_2027 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BBEV_2027 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BBEV_2029 PF00325 Bacterial regulatory proteins, crp family BBEV_2029 PF00027 Cyclic nucleotide-binding domain BBEV_2031 PF00994 Probable molybdopterin binding domain BBEV_2031 PF03454 MoeA C-terminal region (domain IV) BBEV_2031 PF03453 MoeA N-terminal region (domain I and II) BBEV_2032 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BBEV_2033 PF02391 MoaE protein BBEV_2035 PF02630 SCO1/SenC BBEV_2036 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BBEV_2040 PF03591 AzlC protein BBEV_2043 PF12419 SNF2 Helicase protein BBEV_2043 PF00271 Helicase conserved C-terminal domain BBEV_2043 PF00176 SNF2 family N-terminal domain BBEV_2046 PF00581 Rhodanese-like domain BBEV_2047 PF01594 AI-2E family transporter BBEV_2048 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BBEV_2048 PF00356 Bacterial regulatory proteins, lacI family BBEV_2049 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2050 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2053 PF07883 Cupin domain BBEV_2053 PF12833 Helix-turn-helix domain BBEV_2062 PF00581 Rhodanese-like domain BBEV_2063 PF01594 AI-2E family transporter BBEV_2064 PF00356 Bacterial regulatory proteins, lacI family BBEV_2064 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BBEV_2066 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2067 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2069 PF07883 Cupin domain BBEV_2069 PF12833 Helix-turn-helix domain BBEV_2070 PF01554 MatE BBEV_2072 PF16868 NMT1-like family BBEV_2074 PF01380 SIS domain BBEV_2078 PF02310 B12 binding domain BBEV_2078 PF04055 Radical SAM superfamily BBEV_2079 PF02525 Flavodoxin-like fold BBEV_2080 PF03707 Bacterial signalling protein N terminal repeat BBEV_2080 PF00563 EAL domain BBEV_2080 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2081 PF01329 Pterin 4 alpha carbinolamine dehydratase BBEV_2083 PF01451 Low molecular weight phosphotyrosine protein phosphatase BBEV_2084 PF01470 Pyroglutamyl peptidase BBEV_2085 PF00027 Cyclic nucleotide-binding domain BBEV_2085 PF00325 Bacterial regulatory proteins, crp family BBEV_2086 PF00440 Bacterial regulatory proteins, tetR family BBEV_2093 PF04346 Ethanolamine utilisation protein, EutH BBEV_2094 PF03749 Sugar fermentation stimulation protein RE domain BBEV_2094 PF17746 SfsA N-terminal OB domain BBEV_2097 PF10502 Signal peptidase, peptidase S26 BBEV_2098 PF00905 Penicillin binding protein transpeptidase domain BBEV_2098 PF00912 Transglycosylase BBEV_2099 PF17328 Family of unknown function (DUF5366) BBEV_2100 PF03992 Antibiotic biosynthesis monooxygenase BBEV_2101 PF00588 SpoU rRNA Methylase family BBEV_2103 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BBEV_2103 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BBEV_2104 PF08331 Domain of unknown function (DUF1730) BBEV_2106 PF01709 Transcriptional regulator BBEV_2110 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BBEV_2111 PF00857 Isochorismatase family BBEV_2118 PF00672 HAMP domain BBEV_2118 PF05227 CHASE3 domain BBEV_2118 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_2119 PF00672 HAMP domain BBEV_2119 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_2122 PF09084 NMT1/THI5 like BBEV_2123 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2124 PF00005 ABC transporter BBEV_2127 PF03009 Glycerophosphoryl diester phosphodiesterase family BBEV_2128 PF04607 Region found in RelA / SpoT proteins BBEV_2133 PF02613 Nitrate reductase delta subunit BBEV_2135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2135 PF00384 Molybdopterin oxidoreductase BBEV_2135 PF01568 Molydopterin dinucleotide binding domain BBEV_2137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2137 PF07730 Histidine kinase BBEV_2138 PF00196 Bacterial regulatory proteins, luxR family BBEV_2138 PF00072 Response regulator receiver domain BBEV_2139 PF04294 VanW like protein BBEV_2140 PF13684 Dihydroxyacetone kinase family BBEV_2140 PF02734 DAK2 domain BBEV_2142 PF01036 Bacteriorhodopsin-like protein BBEV_2143 PF01226 Formate/nitrite transporter BBEV_2146 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2147 PF00005 ABC transporter BBEV_2147 PF08402 TOBE domain BBEV_2150 PF03466 LysR substrate binding domain BBEV_2150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BBEV_2155 PF00999 Sodium/hydrogen exchanger family BBEV_2156 PF01425 Amidase BBEV_2163 PF00183 Hsp90 protein BBEV_2164 PF18337 RapA N-terminal Tudor like domain BBEV_2164 PF18339 RapA N-terminal Tudor like domain 1 BBEV_2164 PF00176 SNF2 family N-terminal domain BBEV_2164 PF12137 RNA polymerase recycling family C-terminal BBEV_2164 PF00271 Helicase conserved C-terminal domain BBEV_2168 PF00266 Aminotransferase class-V BBEV_2179 PF00176 SNF2 family N-terminal domain BBEV_2179 PF12419 SNF2 Helicase protein BBEV_2179 PF00271 Helicase conserved C-terminal domain BBEV_2181 PF00691 OmpA family BBEV_2181 PF13677 Membrane MotB of proton-channel complex MotA/MotB BBEV_2185 PF01970 Tripartite tricarboxylate transporter TctA family BBEV_2188 PF03328 HpcH/HpaI aldolase/citrate lyase family BBEV_2189 PF00158 Sigma-54 interaction domain BBEV_2189 PF00989 PAS fold BBEV_2189 PF02954 Bacterial regulatory protein, Fis family BBEV_2192 PF00672 HAMP domain BBEV_2192 PF02743 Cache domain BBEV_2192 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_2193 PF03129 Anticodon binding domain BBEV_2193 PF13393 Histidyl-tRNA synthetase BBEV_2194 PF08220 DeoR-like helix-turn-helix domain BBEV_2194 PF00455 DeoR C terminal sensor domain BBEV_2195 PF00834 Ribulose-phosphate 3 epimerase family BBEV_2196 PF01380 SIS domain BBEV_2197 PF08125 Mannitol dehydrogenase C-terminal domain BBEV_2197 PF01232 Mannitol dehydrogenase Rossmann domain BBEV_2198 PF05524 PEP-utilising enzyme, N-terminal BBEV_2198 PF02896 PEP-utilising enzyme, TIM barrel domain BBEV_2198 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BBEV_2198 PF00391 PEP-utilising enzyme, mobile domain BBEV_2198 PF00381 PTS HPr component phosphorylation site BBEV_2199 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BBEV_2199 PF02378 Phosphotransferase system, EIIC BBEV_2200 PF02780 Transketolase, C-terminal domain BBEV_2200 PF02779 Transketolase, pyrimidine binding domain BBEV_2200 PF00456 Transketolase, thiamine diphosphate binding domain BBEV_2201 PF00923 Transaldolase/Fructose-6-phosphate aldolase BBEV_2202 PF02754 Cysteine-rich domain BBEV_2203 PF13183 4Fe-4S dicluster domain BBEV_2203 PF13085 2Fe-2S iron-sulfur cluster binding domain BBEV_2204 PF00890 FAD binding domain BBEV_2204 PF02910 Fumarate reductase flavoprotein C-term BBEV_2206 PF05683 Fumarase C-terminus BBEV_2206 PF05681 Fumarate hydratase (Fumerase) BBEV_2207 PF00939 Sodium:sulfate symporter transmembrane region BBEV_2208 PF00072 Response regulator receiver domain BBEV_2209 PF00989 PAS fold BBEV_2209 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BBEV_2209 PF17203 Single cache domain 3 BBEV_2209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2211 PF12800 4Fe-4S binding domain BBEV_2211 PF13247 4Fe-4S dicluster domain BBEV_2212 PF00384 Molybdopterin oxidoreductase BBEV_2212 PF01568 Molydopterin dinucleotide binding domain BBEV_2212 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2213 PF02613 Nitrate reductase delta subunit BBEV_2214 PF13247 4Fe-4S dicluster domain BBEV_2215 PF00384 Molybdopterin oxidoreductase BBEV_2215 PF01568 Molydopterin dinucleotide binding domain BBEV_2215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2216 PF17853 GGDEF-like domain BBEV_2216 PF07905 Purine catabolism regulatory protein-like family BBEV_2216 PF13556 PucR C-terminal helix-turn-helix domain BBEV_2218 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_2218 PF04324 BFD-like [2Fe-2S] binding domain BBEV_2219 PF01266 FAD dependent oxidoreductase BBEV_2226 PF00210 Ferritin-like domain BBEV_2228 PF07687 Peptidase dimerisation domain BBEV_2228 PF01546 Peptidase family M20/M25/M40 BBEV_2229 PF04235 Protein of unknown function (DUF418) BBEV_2235 PF13732 Domain of unknown function (DUF4162) BBEV_2235 PF00005 ABC transporter BBEV_2238 PF00578 AhpC/TSA family BBEV_2238 PF10417 C-terminal domain of 1-Cys peroxiredoxin BBEV_2241 PF00899 ThiF family BBEV_2242 PF05690 Thiazole biosynthesis protein ThiG BBEV_2243 PF05690 Thiazole biosynthesis protein ThiG BBEV_2243 PF02597 ThiS family BBEV_2244 PF01266 FAD dependent oxidoreductase BBEV_2245 PF02581 Thiamine monophosphate synthase BBEV_2246 PF01370 NAD dependent epimerase/dehydratase family BBEV_2248 PF13476 AAA domain BBEV_2249 PF00149 Calcineurin-like phosphoesterase BBEV_2250 PF00106 short chain dehydrogenase BBEV_2252 PF13556 PucR C-terminal helix-turn-helix domain BBEV_2252 PF05651 Putative sugar diacid recognition BBEV_2252 PF17853 GGDEF-like domain BBEV_2253 PF00384 Molybdopterin oxidoreductase BBEV_2253 PF01568 Molydopterin dinucleotide binding domain BBEV_2253 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2257 PF12800 4Fe-4S binding domain BBEV_2257 PF13247 4Fe-4S dicluster domain BBEV_2258 PF01568 Molydopterin dinucleotide binding domain BBEV_2258 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2258 PF00384 Molybdopterin oxidoreductase BBEV_2261 PF01546 Peptidase family M20/M25/M40 BBEV_2261 PF07687 Peptidase dimerisation domain BBEV_2262 PF01546 Peptidase family M20/M25/M40 BBEV_2262 PF07687 Peptidase dimerisation domain BBEV_2264 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BBEV_2265 PF01522 Polysaccharide deacetylase BBEV_2283 PF14540 Nucleotidyltransferase-like BBEV_2283 PF18576 Helix-turn-helix domain BBEV_2284 PF11023 Zinc-ribbon containing domain BBEV_2285 PF01475 Ferric uptake regulator family BBEV_2287 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BBEV_2290 PF00578 AhpC/TSA family BBEV_2291 PF00202 Aminotransferase class-III BBEV_2292 PF04898 Glutamate synthase central domain BBEV_2292 PF00310 Glutamine amidotransferases class-II BBEV_2292 PF01493 GXGXG motif BBEV_2292 PF01645 Conserved region in glutamate synthase BBEV_2293 PF06081 Aromatic acid exporter family member 1 BBEV_2295 PF00664 ABC transporter transmembrane region BBEV_2295 PF00005 ABC transporter BBEV_2296 PF04167 Protein of unknown function (DUF402) BBEV_2299 PF00535 Glycosyl transferase family 2 BBEV_2301 PF00486 Transcriptional regulatory protein, C terminal BBEV_2301 PF00072 Response regulator receiver domain BBEV_2302 PF02417 Chromate transporter BBEV_2303 PF02417 Chromate transporter BBEV_2306 PF00730 HhH-GPD superfamily base excision DNA repair protein BBEV_2306 PF14815 NUDIX domain BBEV_2307 PF04307 LexA-binding, inner membrane-associated putative hydrolase BBEV_2308 PF14043 WVELL protein BBEV_2309 PF08838 Protein of unknown function (DUF1811) BBEV_2310 PF02631 RecX family BBEV_2311 PF08338 Domain of unknown function (DUF1731) BBEV_2311 PF01370 NAD dependent epimerase/dehydratase family BBEV_2313 PF00392 Bacterial regulatory proteins, gntR family BBEV_2313 PF07702 UTRA domain BBEV_2315 PF00583 Acetyltransferase (GNAT) family BBEV_2318 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_2320 PF00005 ABC transporter BBEV_2321 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_2321 PF00005 ABC transporter BBEV_2322 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2323 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2324 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BBEV_2325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BBEV_2326 PF03063 Prismane/CO dehydrogenase family BBEV_2327 PF00027 Cyclic nucleotide-binding domain BBEV_2327 PF13545 Crp-like helix-turn-helix domain BBEV_2328 PF02769 AIR synthase related protein, C-terminal domain BBEV_2328 PF00586 AIR synthase related protein, N-terminal domain BBEV_2329 PF01924 Hydrogenase formation hypA family BBEV_2330 PF01455 HupF/HypC family BBEV_2331 PF17788 HypF Kae1-like domain BBEV_2331 PF07503 HypF finger BBEV_2331 PF01300 Telomere recombination BBEV_2331 PF00708 Acylphosphatase BBEV_2332 PF02492 CobW/HypB/UreG, nucleotide-binding domain BBEV_2333 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BBEV_2335 PF01750 Hydrogenase maturation protease BBEV_2336 PF01292 Prokaryotic cytochrome b561 BBEV_2337 PF00374 Nickel-dependent hydrogenase BBEV_2338 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BBEV_2338 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BBEV_2339 PF05958 tRNA (Uracil-5-)-methyltransferase BBEV_2339 PF01938 TRAM domain BBEV_2344 PF04055 Radical SAM superfamily BBEV_2344 PF08756 YfkB-like domain BBEV_2345 PF01554 MatE BBEV_2346 PF07690 Major Facilitator Superfamily BBEV_2351 PF01553 Acyltransferase BBEV_2353 PF00708 Acylphosphatase BBEV_2357 PF00171 Aldehyde dehydrogenase family BBEV_2359 PF01209 ubiE/COQ5 methyltransferase family BBEV_2360 PF00484 Carbonic anhydrase BBEV_2361 PF01206 Sulfurtransferase TusA BBEV_2362 PF00581 Rhodanese-like domain BBEV_2362 PF01206 Sulfurtransferase TusA BBEV_2364 PF01594 AI-2E family transporter BBEV_2368 PF00005 ABC transporter BBEV_2368 PF16326 ABC transporter C-terminal domain BBEV_2368 PF12848 ABC transporter BBEV_2370 PF01613 Flavin reductase like domain BBEV_2371 PF01738 Dienelactone hydrolase family BBEV_2372 PF09382 RQC domain BBEV_2372 PF16124 RecQ zinc-binding BBEV_2372 PF00570 HRDC domain BBEV_2372 PF00271 Helicase conserved C-terminal domain BBEV_2372 PF00270 DEAD/DEAH box helicase BBEV_2373 PF01588 Putative tRNA binding domain BBEV_2374 PF02583 Metal-sensitive transcriptional repressor BBEV_2375 PF03605 Anaerobic c4-dicarboxylate membrane transporter BBEV_2376 PF02898 Nitric oxide synthase, oxygenase domain BBEV_2377 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_2377 PF00672 HAMP domain BBEV_2378 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2378 PF00563 EAL domain BBEV_2378 PF03707 Bacterial signalling protein N terminal repeat BBEV_2379 PF01979 Amidohydrolase family BBEV_2379 PF13382 Adenine deaminase C-terminal domain BBEV_2380 PF00664 ABC transporter transmembrane region BBEV_2380 PF00005 ABC transporter BBEV_2381 PF00005 ABC transporter BBEV_2381 PF00664 ABC transporter transmembrane region BBEV_2382 PF02595 Glycerate kinase family BBEV_2383 PF00128 Alpha amylase, catalytic domain BBEV_2383 PF16657 Maltogenic Amylase, C-terminal domain BBEV_2384 PF00892 EamA-like transporter family BBEV_2386 PF00665 Integrase core domain BBEV_2386 PF13276 HTH-like domain BBEV_2386 PF13333 Integrase core domain BBEV_2388 PF13673 Acetyltransferase (GNAT) domain BBEV_2389 PF06826 Predicted Permease Membrane Region BBEV_2389 PF02080 TrkA-C domain BBEV_2391 PF09962 Uncharacterized conserved protein (DUF2196) BBEV_2392 PF05231 MASE1 BBEV_2392 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2392 PF00563 EAL domain BBEV_2392 PF13426 PAS domain BBEV_2392 PF08448 PAS fold BBEV_2392 PF08447 PAS fold BBEV_2394 PF00356 Bacterial regulatory proteins, lacI family BBEV_2395 PF03633 Glycosyl hydrolase family 65, C-terminal domain BBEV_2395 PF03632 Glycosyl hydrolase family 65 central catalytic domain BBEV_2395 PF03636 Glycosyl hydrolase family 65, N-terminal domain BBEV_2397 PF01032 FecCD transport family BBEV_2398 PF01032 FecCD transport family BBEV_2399 PF00005 ABC transporter BBEV_2400 PF01497 Periplasmic binding protein BBEV_2401 PF00625 Guanylate kinase BBEV_2402 PF01263 Aldose 1-epimerase BBEV_2403 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BBEV_2403 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BBEV_2404 PF01261 Xylose isomerase-like TIM barrel BBEV_2405 PF00480 ROK family BBEV_2406 PF02311 AraC-like ligand binding domain BBEV_2406 PF12833 Helix-turn-helix domain BBEV_2407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2407 PF06580 Histidine kinase BBEV_2407 PF02743 Cache domain BBEV_2407 PF00672 HAMP domain BBEV_2408 PF12833 Helix-turn-helix domain BBEV_2408 PF00072 Response regulator receiver domain BBEV_2409 PF01547 Bacterial extracellular solute-binding protein BBEV_2410 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2411 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2412 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BBEV_2412 PF04616 Glycosyl hydrolases family 43 BBEV_2413 PF04854 Protein of unknown function, DUF624 BBEV_2417 PF07043 Protein of unknown function (DUF1328) BBEV_2418 PF07043 Protein of unknown function (DUF1328) BBEV_2420 PF02146 Sir2 family BBEV_2421 PF01476 LysM domain BBEV_2421 PF06725 3D domain BBEV_2424 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BBEV_2425 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BBEV_2425 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BBEV_2425 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BBEV_2426 PF03707 Bacterial signalling protein N terminal repeat BBEV_2426 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2426 PF00563 EAL domain BBEV_2427 PF08450 SMP-30/Gluconolactonase/LRE-like region BBEV_2428 PF07690 Major Facilitator Superfamily BBEV_2428 PF00083 Sugar (and other) transporter BBEV_2430 PF00795 Carbon-nitrogen hydrolase BBEV_2431 PF01557 Fumarylacetoacetate (FAA) hydrolase family BBEV_2432 PF01757 Acyltransferase family BBEV_2434 PF04143 Sulphur transport BBEV_2437 PF00581 Rhodanese-like domain BBEV_2439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_2441 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BBEV_2442 PF03109 ABC1 family BBEV_2446 PF00296 Luciferase-like monooxygenase BBEV_2448 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2448 PF03707 Bacterial signalling protein N terminal repeat BBEV_2448 PF00563 EAL domain BBEV_2449 PF00107 Zinc-binding dehydrogenase BBEV_2449 PF08240 Alcohol dehydrogenase GroES-like domain BBEV_2451 PF00480 ROK family BBEV_2453 PF13538 UvrD-like helicase C-terminal domain BBEV_2454 PF09312 SurA N-terminal domain BBEV_2458 PF13005 zinc-finger binding domain of transposase IS66 BBEV_2458 PF03050 Transposase IS66 family BBEV_2458 PF13007 Transposase C of IS166 homeodomain BBEV_2458 PF13817 IS66 C-terminal element BBEV_2462 PF17934 Tetracyclin repressor-like, C-terminal domain BBEV_2462 PF00440 Bacterial regulatory proteins, tetR family BBEV_2464 PF03641 Possible lysine decarboxylase BBEV_2469 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BBEV_2469 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_2470 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BBEV_2473 PF00072 Response regulator receiver domain BBEV_2473 PF00196 Bacterial regulatory proteins, luxR family BBEV_2474 PF00672 HAMP domain BBEV_2474 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BBEV_2474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2474 PF07730 Histidine kinase BBEV_2475 PF02770 Acyl-CoA dehydrogenase, middle domain BBEV_2475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BBEV_2475 PF18158 Adaptive response protein AidB N-terminal domain BBEV_2476 PF00376 MerR family regulatory protein BBEV_2476 PF09278 MerR, DNA binding BBEV_2480 PF00440 Bacterial regulatory proteins, tetR family BBEV_2481 PF01497 Periplasmic binding protein BBEV_2482 PF01032 FecCD transport family BBEV_2483 PF00005 ABC transporter BBEV_2484 PF02525 Flavodoxin-like fold BBEV_2487 PF00300 Histidine phosphatase superfamily (branch 1) BBEV_2492 PF08447 PAS fold BBEV_2492 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2492 PF00563 EAL domain BBEV_2492 PF08448 PAS fold BBEV_2492 PF13426 PAS domain BBEV_2492 PF05231 MASE1 BBEV_2495 PF03358 NADPH-dependent FMN reductase BBEV_2497 PF01638 HxlR-like helix-turn-helix BBEV_2499 PF00005 ABC transporter BBEV_2499 PF08402 TOBE domain BBEV_2500 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2501 PF12849 PBP superfamily domain BBEV_2502 PF12728 Helix-turn-helix domain BBEV_2502 PF12727 PBP superfamily domain BBEV_2503 PF01152 Bacterial-like globin BBEV_2504 PF03060 Nitronate monooxygenase BBEV_2506 PF00248 Aldo/keto reductase family BBEV_2509 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BBEV_2510 PF02554 Carbon starvation protein CstA BBEV_2511 PF00072 Response regulator receiver domain BBEV_2511 PF04397 LytTr DNA-binding domain BBEV_2512 PF06580 Histidine kinase BBEV_2512 PF07694 5TMR of 5TMR-LYT BBEV_2512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2520 PF00437 Type II/IV secretion system protein BBEV_2521 PF10609 NUBPL iron-transfer P-loop NTPase BBEV_2528 PF00583 Acetyltransferase (GNAT) family BBEV_2541 PF02661 Fic/DOC family BBEV_2541 PF13784 Fic/DOC family N-terminal BBEV_2546 PF13005 zinc-finger binding domain of transposase IS66 BBEV_2546 PF13817 IS66 C-terminal element BBEV_2546 PF03050 Transposase IS66 family BBEV_2546 PF13007 Transposase C of IS166 homeodomain BBEV_2552 PF00082 Subtilase family BBEV_2557 PF03050 Transposase IS66 family BBEV_2557 PF13817 IS66 C-terminal element BBEV_2557 PF13005 zinc-finger binding domain of transposase IS66 BBEV_2557 PF13007 Transposase C of IS166 homeodomain BBEV_2558 PF01548 Transposase BBEV_2558 PF02371 Transposase IS116/IS110/IS902 family BBEV_2561 PF00239 Resolvase, N terminal domain BBEV_2561 PF02796 Helix-turn-helix domain of resolvase BBEV_2565 PF01938 TRAM domain BBEV_2565 PF05958 tRNA (Uracil-5-)-methyltransferase BBEV_2569 PF02040 Arsenical pump membrane protein BBEV_2570 PF02374 Anion-transporting ATPase BBEV_2572 PF06953 Arsenical resistance operon trans-acting repressor ArsD BBEV_2573 PF01022 Bacterial regulatory protein, arsR family BBEV_2574 PF01212 Beta-eliminating lyase BBEV_2575 PF01791 DeoC/LacD family aldolase BBEV_2578 PF00781 Diacylglycerol kinase catalytic domain BBEV_2580 PF02934 GatB/GatE catalytic domain BBEV_2580 PF02637 GatB domain BBEV_2581 PF01425 Amidase BBEV_2582 PF02686 Glu-tRNAGln amidotransferase C subunit BBEV_2583 PF07537 CamS sex pheromone cAM373 precursor BBEV_2584 PF12826 Helix-hairpin-helix motif BBEV_2584 PF03120 NAD-dependent DNA ligase OB-fold domain BBEV_2584 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BBEV_2584 PF01653 NAD-dependent DNA ligase adenylation domain BBEV_2584 PF00533 BRCA1 C Terminus (BRCT) domain BBEV_2585 PF00580 UvrD/REP helicase N-terminal domain BBEV_2585 PF13361 UvrD-like helicase C-terminal domain BBEV_2586 PF01884 PcrB family BBEV_2587 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_2587 PF00672 HAMP domain BBEV_2587 PF02743 Cache domain BBEV_2588 PF00293 NUDIX domain BBEV_2589 PF00271 Helicase conserved C-terminal domain BBEV_2589 PF08463 EcoEI R protein C-terminal BBEV_2589 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BBEV_2589 PF04851 Type III restriction enzyme, res subunit BBEV_2592 PF00067 Cytochrome P450 BBEV_2594 PF00253 Ribosomal protein S14p/S29e BBEV_2596 PF02492 CobW/HypB/UreG, nucleotide-binding domain BBEV_2596 PF07683 Cobalamin synthesis protein cobW C-terminal domain BBEV_2599 PF01738 Dienelactone hydrolase family BBEV_2600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BBEV_2602 PF01371 Trp repressor protein BBEV_2603 PF17479 Protein of unknown function (DUF3048) C-terminal domain BBEV_2603 PF11258 Protein of unknown function (DUF3048) N-terminal domain BBEV_2604 PF01979 Amidohydrolase family BBEV_2604 PF13382 Adenine deaminase C-terminal domain BBEV_2606 PF07478 D-ala D-ala ligase C-terminus BBEV_2608 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_2609 PF03070 TENA/THI-4/PQQC family BBEV_2611 PF00005 ABC transporter BBEV_2612 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2613 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2619 PF12464 Maltose acetyltransferase BBEV_2619 PF14602 Hexapeptide repeat of succinyl-transferase BBEV_2620 PF02843 Phosphoribosylglycinamide synthetase, C domain BBEV_2620 PF02844 Phosphoribosylglycinamide synthetase, N domain BBEV_2620 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BBEV_2621 PF01808 AICARFT/IMPCHase bienzyme BBEV_2621 PF02142 MGS-like domain BBEV_2622 PF00551 Formyl transferase BBEV_2623 PF02769 AIR synthase related protein, C-terminal domain BBEV_2623 PF00586 AIR synthase related protein, N-terminal domain BBEV_2624 PF00156 Phosphoribosyl transferase domain BBEV_2625 PF00586 AIR synthase related protein, N-terminal domain BBEV_2625 PF02769 AIR synthase related protein, C-terminal domain BBEV_2625 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BBEV_2627 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BBEV_2628 PF01259 SAICAR synthetase BBEV_2629 PF00206 Lyase BBEV_2629 PF10397 Adenylosuccinate lyase C-terminus BBEV_2630 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BBEV_2630 PF02222 ATP-grasp domain BBEV_2631 PF00731 AIR carboxylase BBEV_2634 PF17871 AAA lid domain BBEV_2634 PF07724 AAA domain (Cdc48 subfamily) BBEV_2634 PF00004 ATPase family associated with various cellular activities (AAA) BBEV_2634 PF10431 C-terminal, D2-small domain, of ClpB protein BBEV_2636 PF00512 His Kinase A (phospho-acceptor) domain BBEV_2636 PF13426 PAS domain BBEV_2636 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2636 PF00672 HAMP domain BBEV_2639 PF07670 Nucleoside recognition BBEV_2639 PF02421 Ferrous iron transport protein B BBEV_2639 PF07664 Ferrous iron transport protein B C terminus BBEV_2641 PF00860 Permease family BBEV_2642 PF00117 Glutamine amidotransferase class-I BBEV_2642 PF00958 GMP synthase C terminal domain BBEV_2642 PF02540 NAD synthase BBEV_2643 PF01841 Transglutaminase-like superfamily BBEV_2643 PF11992 Domain of unknown function (DUF3488) BBEV_2643 PF13559 Domain of unknown function (DUF4129) BBEV_2644 PF01882 Protein of unknown function DUF58 BBEV_2645 PF17863 AAA lid domain BBEV_2645 PF07726 ATPase family associated with various cellular activities (AAA) BBEV_2646 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2646 PF00563 EAL domain BBEV_2646 PF03707 Bacterial signalling protein N terminal repeat BBEV_2648 PF00881 Nitroreductase family BBEV_2649 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_2649 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BBEV_2650 PF00664 ABC transporter transmembrane region BBEV_2650 PF00005 ABC transporter BBEV_2651 PF00664 ABC transporter transmembrane region BBEV_2651 PF00005 ABC transporter BBEV_2652 PF00563 EAL domain BBEV_2652 PF03707 Bacterial signalling protein N terminal repeat BBEV_2652 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2653 PF14005 YpjP-like protein BBEV_2658 PF00072 Response regulator receiver domain BBEV_2658 PF00211 Adenylate and Guanylate cyclase catalytic domain BBEV_2659 PF00664 ABC transporter transmembrane region BBEV_2659 PF00005 ABC transporter BBEV_2660 PF00072 Response regulator receiver domain BBEV_2660 PF00486 Transcriptional regulatory protein, C terminal BBEV_2661 PF00512 His Kinase A (phospho-acceptor) domain BBEV_2661 PF00672 HAMP domain BBEV_2661 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2666 PF00581 Rhodanese-like domain BBEV_2666 PF00753 Metallo-beta-lactamase superfamily BBEV_2667 PF04405 Domain of Unknown function (DUF542) BBEV_2667 PF01814 Hemerythrin HHE cation binding domain BBEV_2670 PF00465 Iron-containing alcohol dehydrogenase BBEV_2671 PF07995 Glucose / Sorbosone dehydrogenase BBEV_2672 PF02829 3H domain BBEV_2672 PF08279 HTH domain BBEV_2673 PF00266 Aminotransferase class-V BBEV_2674 PF00890 FAD binding domain BBEV_2674 PF02910 Fumarate reductase flavoprotein C-term BBEV_2675 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BBEV_2675 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BBEV_2676 PF02445 Quinolinate synthetase A protein BBEV_2677 PF01202 Shikimate kinase BBEV_2678 PF01220 Dehydroquinase class II BBEV_2679 PF00535 Glycosyl transferase family 2 BBEV_2684 PF13247 4Fe-4S dicluster domain BBEV_2686 PF00266 Aminotransferase class-V BBEV_2687 PF07687 Peptidase dimerisation domain BBEV_2687 PF01546 Peptidase family M20/M25/M40 BBEV_2688 PF00576 HIUase/Transthyretin family BBEV_2689 PF09349 OHCU decarboxylase BBEV_2689 PF01014 Uricase BBEV_2690 PF09349 OHCU decarboxylase BBEV_2690 PF01014 Uricase BBEV_2691 PF01979 Amidohydrolase family BBEV_2692 PF12804 MobA-like NTP transferase domain BBEV_2693 PF02625 XdhC and CoxI family BBEV_2693 PF13478 XdhC Rossmann domain BBEV_2694 PF00111 2Fe-2S iron-sulfur cluster binding domain BBEV_2694 PF01799 [2Fe-2S] binding domain BBEV_2695 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BBEV_2695 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BBEV_2696 PF00941 FAD binding domain in molybdopterin dehydrogenase BBEV_2697 PF01979 Amidohydrolase family BBEV_2698 PF01425 Amidase BBEV_2699 PF02633 Creatinine amidohydrolase BBEV_2701 PF07969 Amidohydrolase family BBEV_2702 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2704 PF00005 ABC transporter BBEV_2705 PF07969 Amidohydrolase family BBEV_2706 PF13556 PucR C-terminal helix-turn-helix domain BBEV_2706 PF07905 Purine catabolism regulatory protein-like family BBEV_2706 PF17853 GGDEF-like domain BBEV_2708 PF02872 5'-nucleotidase, C-terminal domain BBEV_2708 PF00149 Calcineurin-like phosphoesterase BBEV_2712 PF01966 HD domain BBEV_2712 PF00672 HAMP domain BBEV_2713 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BBEV_2713 PF06827 Zinc finger found in FPG and IleRS BBEV_2713 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BBEV_2715 PF03167 Uracil DNA glycosylase superfamily BBEV_2716 PF00583 Acetyltransferase (GNAT) family BBEV_2717 PF12849 PBP superfamily domain BBEV_2720 PF13183 4Fe-4S dicluster domain BBEV_2720 PF13085 2Fe-2S iron-sulfur cluster binding domain BBEV_2721 PF00890 FAD binding domain BBEV_2721 PF02910 Fumarate reductase flavoprotein C-term BBEV_2722 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BBEV_2723 PF10415 Fumarase C C-terminus BBEV_2723 PF00206 Lyase BBEV_2725 PF00710 Asparaginase, N-terminal BBEV_2725 PF17763 Glutaminase/Asparaginase C-terminal domain BBEV_2726 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2727 PF00072 Response regulator receiver domain BBEV_2727 PF08664 YcbB domain BBEV_2729 PF17802 Prealbumin-like fold domain BBEV_2729 PF05737 Collagen binding domain BBEV_2729 PF05738 Cna protein B-type domain BBEV_2730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2730 PF06580 Histidine kinase BBEV_2731 PF00072 Response regulator receiver domain BBEV_2731 PF04397 LytTr DNA-binding domain BBEV_2733 PF02954 Bacterial regulatory protein, Fis family BBEV_2733 PF00158 Sigma-54 interaction domain BBEV_2733 PF01590 GAF domain BBEV_2734 PF00676 Dehydrogenase E1 component BBEV_2735 PF02780 Transketolase, C-terminal domain BBEV_2735 PF02779 Transketolase, pyrimidine binding domain BBEV_2736 PF00364 Biotin-requiring enzyme BBEV_2736 PF02817 e3 binding domain BBEV_2736 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BBEV_2737 PF08240 Alcohol dehydrogenase GroES-like domain BBEV_2737 PF00107 Zinc-binding dehydrogenase BBEV_2738 PF00875 DNA photolyase BBEV_2738 PF03441 FAD binding domain of DNA photolyase BBEV_2740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BBEV_2740 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_2744 PF13545 Crp-like helix-turn-helix domain BBEV_2744 PF00027 Cyclic nucleotide-binding domain BBEV_2747 PF00085 Thioredoxin BBEV_2748 PF00210 Ferritin-like domain BBEV_2751 PF01207 Dihydrouridine synthase (Dus) BBEV_2753 PF07732 Multicopper oxidase BBEV_2753 PF07731 Multicopper oxidase BBEV_2754 PF00939 Sodium:sulfate symporter transmembrane region BBEV_2760 PF01593 Flavin containing amine oxidoreductase BBEV_2761 PF11066 Protein of unknown function (DUF2867) BBEV_2761 PF13460 NAD(P)H-binding BBEV_2762 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BBEV_2763 PF00248 Aldo/keto reductase family BBEV_2764 PF00118 TCP-1/cpn60 chaperonin family BBEV_2765 PF00166 Chaperonin 10 Kd subunit BBEV_2768 PF10518 TAT (twin-arginine translocation) pathway signal sequence BBEV_2768 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2768 PF00384 Molybdopterin oxidoreductase BBEV_2768 PF01568 Molydopterin dinucleotide binding domain BBEV_2770 PF13247 4Fe-4S dicluster domain BBEV_2771 PF02416 mttA/Hcf106 family BBEV_2772 PF02954 Bacterial regulatory protein, Fis family BBEV_2772 PF00158 Sigma-54 interaction domain BBEV_2772 PF00072 Response regulator receiver domain BBEV_2773 PF00072 Response regulator receiver domain BBEV_2773 PF13188 PAS domain BBEV_2773 PF08448 PAS fold BBEV_2773 PF00512 His Kinase A (phospho-acceptor) domain BBEV_2773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_2775 PF07690 Major Facilitator Superfamily BBEV_2776 PF06971 Putative DNA-binding protein N-terminus BBEV_2776 PF02629 CoA binding domain BBEV_2777 PF01967 MoaC family BBEV_2778 PF12848 ABC transporter BBEV_2778 PF16326 ABC transporter C-terminal domain BBEV_2778 PF00005 ABC transporter BBEV_2779 PF00814 Glycoprotease family BBEV_2780 PF00583 Acetyltransferase (GNAT) family BBEV_2781 PF00814 Glycoprotease family BBEV_2782 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BBEV_2783 PF02769 AIR synthase related protein, C-terminal domain BBEV_2783 PF00586 AIR synthase related protein, N-terminal domain BBEV_2784 PF01053 Cys/Met metabolism PLP-dependent enzyme BBEV_2785 PF00664 ABC transporter transmembrane region BBEV_2785 PF00005 ABC transporter BBEV_2786 PF00005 ABC transporter BBEV_2786 PF00664 ABC transporter transmembrane region BBEV_2787 PF02322 Cytochrome bd terminal oxidase subunit II BBEV_2788 PF01654 Cytochrome bd terminal oxidase subunit I BBEV_2801 PF17283 SprT-like zinc ribbon domain BBEV_2801 PF10263 SprT-like family BBEV_2802 PF17674 HHH domain BBEV_2802 PF09371 Tex-like protein N-terminal domain BBEV_2802 PF16921 Tex protein YqgF-like domain BBEV_2802 PF00575 S1 RNA binding domain BBEV_2804 PF04539 Sigma-70 region 3 BBEV_2804 PF04545 Sigma-70, region 4 BBEV_2804 PF04542 Sigma-70 region 2 BBEV_2805 PF13581 Histidine kinase-like ATPase domain BBEV_2806 PF01740 STAS domain BBEV_2807 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain BBEV_2807 PF07228 Stage II sporulation protein E (SpoIIE) BBEV_2808 PF13581 Histidine kinase-like ATPase domain BBEV_2809 PF01740 STAS domain BBEV_2810 PF08678 Rsbr N terminal BBEV_2810 PF01740 STAS domain BBEV_2811 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BBEV_2813 PF01168 Alanine racemase, N-terminal domain BBEV_2813 PF00842 Alanine racemase, C-terminal domain BBEV_2814 PF01256 Carbohydrate kinase BBEV_2814 PF03853 YjeF-related protein N-terminus BBEV_2815 PF01648 4'-phosphopantetheinyl transferase superfamily BBEV_2816 PF01694 Rhomboid family BBEV_2817 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2819 PF08402 TOBE domain BBEV_2819 PF00005 ABC transporter BBEV_2820 PF00491 Arginase family BBEV_2821 PF01619 Proline dehydrogenase BBEV_2822 PF00202 Aminotransferase class-III BBEV_2823 PF00171 Aldehyde dehydrogenase family BBEV_2824 PF02954 Bacterial regulatory protein, Fis family BBEV_2824 PF00158 Sigma-54 interaction domain BBEV_2824 PF13426 PAS domain BBEV_2827 PF08281 Sigma-70, region 4 BBEV_2827 PF04542 Sigma-70 region 2 BBEV_2830 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2830 PF03707 Bacterial signalling protein N terminal repeat BBEV_2830 PF00563 EAL domain BBEV_2834 PF02028 BCCT, betaine/carnitine/choline family transporter BBEV_2835 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BBEV_2836 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BBEV_2837 PF02378 Phosphotransferase system, EIIC BBEV_2837 PF00367 phosphotransferase system, EIIB BBEV_2838 PF00356 Bacterial regulatory proteins, lacI family BBEV_2839 PF00313 'Cold-shock' DNA-binding domain BBEV_2841 PF00916 Sulfate permease family BBEV_2841 PF01740 STAS domain BBEV_2842 PF00582 Universal stress protein family BBEV_2843 PF13649 Methyltransferase domain BBEV_2844 PF01554 MatE BBEV_2846 PF01740 STAS domain BBEV_2846 PF13426 PAS domain BBEV_2847 PF01022 Bacterial regulatory protein, arsR family BBEV_2848 PF00571 CBS domain BBEV_2848 PF01769 Divalent cation transporter BBEV_2848 PF03448 MgtE intracellular N domain BBEV_2849 PF00873 AcrB/AcrD/AcrF family BBEV_2851 PF00497 Bacterial extracellular solute-binding proteins, family 3 BBEV_2852 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2855 PF01368 DHH family BBEV_2855 PF02833 DHHA2 domain BBEV_2856 PF02310 B12 binding domain BBEV_2856 PF02607 B12 binding domain BBEV_2856 PF02965 Vitamin B12 dependent methionine synthase, activation domain BBEV_2856 PF00809 Pterin binding enzyme BBEV_2856 PF02574 Homocysteine S-methyltransferase BBEV_2857 PF02219 Methylenetetrahydrofolate reductase BBEV_2857 PF02574 Homocysteine S-methyltransferase BBEV_2858 PF02219 Methylenetetrahydrofolate reductase BBEV_2858 PF02574 Homocysteine S-methyltransferase BBEV_2859 PF01053 Cys/Met metabolism PLP-dependent enzyme BBEV_2860 PF01053 Cys/Met metabolism PLP-dependent enzyme BBEV_2864 PF00583 Acetyltransferase (GNAT) family BBEV_2865 PF07690 Major Facilitator Superfamily BBEV_2866 PF02621 Menaquinone biosynthesis BBEV_2867 PF01048 Phosphorylase superfamily BBEV_2873 PF00005 ABC transporter BBEV_2874 PF00392 Bacterial regulatory proteins, gntR family BBEV_2874 PF07702 UTRA domain BBEV_2876 PF09335 SNARE associated Golgi protein BBEV_2877 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BBEV_2877 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_2877 PF00403 Heavy-metal-associated domain BBEV_2879 PF00107 Zinc-binding dehydrogenase BBEV_2879 PF08240 Alcohol dehydrogenase GroES-like domain BBEV_2880 PF03458 UPF0126 domain BBEV_2883 PF03006 Haemolysin-III related BBEV_2884 PF00155 Aminotransferase class I and II BBEV_2886 PF00072 Response regulator receiver domain BBEV_2886 PF00990 Diguanylate cyclase, GGDEF domain BBEV_2887 PF00753 Metallo-beta-lactamase superfamily BBEV_2887 PF12706 Beta-lactamase superfamily domain BBEV_2888 PF02028 BCCT, betaine/carnitine/choline family transporter BBEV_2889 PF00916 Sulfate permease family BBEV_2889 PF01740 STAS domain BBEV_2890 PF00581 Rhodanese-like domain BBEV_2890 PF00753 Metallo-beta-lactamase superfamily BBEV_2892 PF03401 Tripartite tricarboxylate transporter family receptor BBEV_2894 PF00248 Aldo/keto reductase family BBEV_2895 PF01435 Peptidase family M48 BBEV_2898 PF03358 NADPH-dependent FMN reductase BBEV_2900 PF01047 MarR family BBEV_2901 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BBEV_2902 PF09335 SNARE associated Golgi protein BBEV_2905 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BBEV_2905 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BBEV_2906 PF16363 GDP-mannose 4,6 dehydratase BBEV_2907 PF10509 Galactokinase galactose-binding signature BBEV_2907 PF00288 GHMP kinases N terminal domain BBEV_2907 PF08544 GHMP kinases C terminal BBEV_2908 PF16875 Glycosyl hydrolase family 36 N-terminal domain BBEV_2908 PF16874 Glycosyl hydrolase family 36 C-terminal domain BBEV_2909 PF00356 Bacterial regulatory proteins, lacI family BBEV_2910 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BBEV_2910 PF00703 Glycosyl hydrolases family 2 BBEV_2910 PF02929 Beta galactosidase small chain BBEV_2910 PF16353 Domain of unknown function(DUF4981) BBEV_2910 PF02837 Glycosyl hydrolases family 2, sugar binding domain BBEV_2911 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2912 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2913 PF01547 Bacterial extracellular solute-binding protein BBEV_2914 PF01047 MarR family BBEV_2914 PF00480 ROK family BBEV_2915 PF04011 LemA family BBEV_2916 PF01435 Peptidase family M48 BBEV_2917 PF01047 MarR family BBEV_2919 PF02743 Cache domain BBEV_2919 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BBEV_2919 PF00672 HAMP domain BBEV_2922 PF01464 Transglycosylase SLT domain BBEV_2922 PF10145 Phage-related minor tail protein BBEV_2922 PF01551 Peptidase family M23 BBEV_2923 PF00486 Transcriptional regulatory protein, C terminal BBEV_2923 PF00072 Response regulator receiver domain BBEV_2924 PF01476 LysM domain BBEV_2924 PF00877 NlpC/P60 family BBEV_2925 PF02449 Beta-galactosidase BBEV_2925 PF08532 Beta-galactosidase trimerisation domain BBEV_2925 PF08533 Beta-galactosidase C-terminal domain BBEV_2927 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_2927 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BBEV_2928 PF02441 Flavoprotein BBEV_2929 PF08281 Sigma-70, region 4 BBEV_2929 PF04542 Sigma-70 region 2 BBEV_2933 PF02586 SOS response associated peptidase (SRAP) BBEV_2934 PF02522 Aminoglycoside 3-N-acetyltransferase BBEV_2937 PF03176 MMPL family BBEV_2939 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BBEV_2942 PF00578 AhpC/TSA family BBEV_2942 PF10417 C-terminal domain of 1-Cys peroxiredoxin BBEV_2943 PF13192 Thioredoxin domain BBEV_2943 PF07992 Pyridine nucleotide-disulphide oxidoreductase BBEV_2945 PF00141 Peroxidase BBEV_2947 PF02378 Phosphotransferase system, EIIC BBEV_2947 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BBEV_2948 PF05043 Mga helix-turn-helix domain BBEV_2948 PF00874 PRD domain BBEV_2948 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BBEV_2948 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BBEV_2948 PF08279 HTH domain BBEV_2949 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BBEV_2950 PF01232 Mannitol dehydrogenase Rossmann domain BBEV_2950 PF08125 Mannitol dehydrogenase C-terminal domain BBEV_2953 PF01636 Phosphotransferase enzyme family BBEV_2956 PF00144 Beta-lactamase BBEV_2957 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BBEV_2957 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BBEV_2958 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BBEV_2958 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BBEV_2959 PF00474 Sodium:solute symporter family BBEV_2961 PF02954 Bacterial regulatory protein, Fis family BBEV_2961 PF00158 Sigma-54 interaction domain BBEV_2961 PF13426 PAS domain BBEV_2964 PF01380 SIS domain BBEV_2965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BBEV_2965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BBEV_2965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BBEV_2965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BBEV_2966 PF07949 YbbR-like protein BBEV_2967 PF02457 DisA bacterial checkpoint controller nucleotide-binding BBEV_2968 PF13490 Putative zinc-finger BBEV_2969 PF08281 Sigma-70, region 4 BBEV_2969 PF04542 Sigma-70 region 2 BBEV_2975 PF14089 KinB-signalling pathway activation in sporulation BBEV_2976 PF10609 NUBPL iron-transfer P-loop NTPase BBEV_2977 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BBEV_2979 PF00248 Aldo/keto reductase family BBEV_2982 PF11738 Protein of unknown function (DUF3298) BBEV_2982 PF01522 Polysaccharide deacetylase BBEV_2982 PF13739 Deacetylase PdaC BBEV_2983 PF00005 ABC transporter BBEV_2983 PF00664 ABC transporter transmembrane region BBEV_2984 PF00005 ABC transporter BBEV_2984 PF00664 ABC transporter transmembrane region BBEV_2988 PF12802 MarR family BBEV_2989 PF00571 CBS domain BBEV_2989 PF00005 ABC transporter BBEV_2990 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2991 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BBEV_2992 PF00005 ABC transporter BBEV_2993 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_2995 PF03466 LysR substrate binding domain BBEV_2995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BBEV_2996 PF00581 Rhodanese-like domain BBEV_2998 PF13685 Iron-containing alcohol dehydrogenase BBEV_2999 PF00392 Bacterial regulatory proteins, gntR family BBEV_3000 PF11762 L-arabinose isomerase C-terminal domain BBEV_3000 PF02610 L-arabinose isomerase BBEV_3001 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BBEV_3001 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BBEV_3002 PF00596 Class II Aldolase and Adducin N-terminal domain BBEV_3003 PF13416 Bacterial extracellular solute-binding protein BBEV_3004 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3005 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3007 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BBEV_3009 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3010 PF00005 ABC transporter BBEV_3010 PF12857 TOBE-like domain BBEV_3012 PF00403 Heavy-metal-associated domain BBEV_3014 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3015 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3016 PF13416 Bacterial extracellular solute-binding protein BBEV_3017 PF04854 Protein of unknown function, DUF624 BBEV_3018 PF00356 Bacterial regulatory proteins, lacI family BBEV_3018 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BBEV_3020 PF00480 ROK family BBEV_3022 PF04542 Sigma-70 region 2 BBEV_3022 PF08281 Sigma-70, region 4 BBEV_3023 PF00072 Response regulator receiver domain BBEV_3023 PF00486 Transcriptional regulatory protein, C terminal BBEV_3024 PF00672 HAMP domain BBEV_3024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_3024 PF00989 PAS fold BBEV_3024 PF00512 His Kinase A (phospho-acceptor) domain BBEV_3024 PF18698 Histidine kinase sensor domain BBEV_3028 PF01418 Helix-turn-helix domain, rpiR family BBEV_3028 PF01380 SIS domain BBEV_3029 PF13416 Bacterial extracellular solute-binding protein BBEV_3030 PF11975 Family 4 glycosyl hydrolase C-terminal domain BBEV_3030 PF02056 Family 4 glycosyl hydrolase BBEV_3031 PF06271 RDD family BBEV_3032 PF07690 Major Facilitator Superfamily BBEV_3037 PF13302 Acetyltransferase (GNAT) domain BBEV_3039 PF03477 ATP cone domain BBEV_3039 PF02867 Ribonucleotide reductase, barrel domain BBEV_3039 PF00317 Ribonucleotide reductase, all-alpha domain BBEV_3040 PF00268 Ribonucleotide reductase, small chain BBEV_3041 PF00258 Flavodoxin BBEV_3042 PF13597 Anaerobic ribonucleoside-triphosphate reductase BBEV_3042 PF03477 ATP cone domain BBEV_3043 PF04055 Radical SAM superfamily BBEV_3045 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3046 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3047 PF13416 Bacterial extracellular solute-binding protein BBEV_3049 PF00356 Bacterial regulatory proteins, lacI family BBEV_3050 PF01872 RibD C-terminal domain BBEV_3051 PF00561 alpha/beta hydrolase fold BBEV_3056 PF00672 HAMP domain BBEV_3056 PF07730 Histidine kinase BBEV_3056 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_3057 PF00072 Response regulator receiver domain BBEV_3057 PF00196 Bacterial regulatory proteins, luxR family BBEV_3060 PF13091 PLD-like domain BBEV_3061 PF00255 Glutathione peroxidase BBEV_3068 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BBEV_3068 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BBEV_3069 PF01261 Xylose isomerase-like TIM barrel BBEV_3070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BBEV_3070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BBEV_3074 PF01794 Ferric reductase like transmembrane component BBEV_3074 PF04205 FMN-binding domain BBEV_3075 PF00391 PEP-utilising enzyme, mobile domain BBEV_3075 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BBEV_3076 PF00440 Bacterial regulatory proteins, tetR family BBEV_3077 PF00990 Diguanylate cyclase, GGDEF domain BBEV_3077 PF08447 PAS fold BBEV_3077 PF08448 PAS fold BBEV_3077 PF13426 PAS domain BBEV_3077 PF00563 EAL domain BBEV_3077 PF05231 MASE1 BBEV_3079 PF04542 Sigma-70 region 2 BBEV_3079 PF08281 Sigma-70, region 4 BBEV_3082 PF13847 Methyltransferase domain BBEV_3083 PF08281 Sigma-70, region 4 BBEV_3083 PF04542 Sigma-70 region 2 BBEV_3086 PF00005 ABC transporter BBEV_3092 PF00561 alpha/beta hydrolase fold BBEV_3093 PF00561 alpha/beta hydrolase fold BBEV_3098 PF04794 YdjC-like protein BBEV_3099 PF11975 Family 4 glycosyl hydrolase C-terminal domain BBEV_3099 PF02056 Family 4 glycosyl hydrolase BBEV_3100 PF02378 Phosphotransferase system, EIIC BBEV_3101 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BBEV_3102 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BBEV_3103 PF13007 Transposase C of IS166 homeodomain BBEV_3103 PF13005 zinc-finger binding domain of transposase IS66 BBEV_3103 PF03050 Transposase IS66 family BBEV_3103 PF13817 IS66 C-terminal element BBEV_3108 PF01593 Flavin containing amine oxidoreductase BBEV_3110 PF02687 FtsX-like permease family BBEV_3110 PF00005 ABC transporter BBEV_3110 PF12704 MacB-like periplasmic core domain BBEV_3126 PF13784 Fic/DOC family N-terminal BBEV_3126 PF02661 Fic/DOC family BBEV_3129 PF00313 'Cold-shock' DNA-binding domain BBEV_3130 PF02661 Fic/DOC family BBEV_3135 PF00011 Hsp20/alpha crystallin family BBEV_3148 PF08448 PAS fold BBEV_3148 PF00990 Diguanylate cyclase, GGDEF domain BBEV_3154 PF18766 SWI2/SNF2 ATPase BBEV_3154 PF11867 Domain of unknown function (DUF3387) BBEV_3154 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BBEV_3155 PF01420 Type I restriction modification DNA specificity domain BBEV_3156 PF02384 N-6 DNA Methylase BBEV_3161 PF16884 N-terminal domain of oxidoreductase BBEV_3161 PF00107 Zinc-binding dehydrogenase BBEV_3166 PF00583 Acetyltransferase (GNAT) family BBEV_3170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BBEV_3170 PF00874 PRD domain BBEV_3170 PF08279 HTH domain BBEV_3170 PF05043 Mga helix-turn-helix domain BBEV_3171 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BBEV_3172 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BBEV_3173 PF03611 PTS system sugar-specific permease component BBEV_3174 PF00290 Tryptophan synthase alpha chain BBEV_3176 PF01418 Helix-turn-helix domain, rpiR family BBEV_3176 PF01380 SIS domain BBEV_3177 PF01380 SIS domain BBEV_3178 PF07075 Protein of unknown function (DUF1343) BBEV_3179 PF11975 Family 4 glycosyl hydrolase C-terminal domain BBEV_3179 PF02056 Family 4 glycosyl hydrolase BBEV_3180 PF01869 BadF/BadG/BcrA/BcrD ATPase family BBEV_3181 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3182 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3185 PF00144 Beta-lactamase BBEV_3188 PF01979 Amidohydrolase family BBEV_3189 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BBEV_3191 PF13580 SIS domain BBEV_3192 PF00722 Glycosyl hydrolases family 16 BBEV_3194 PF01769 Divalent cation transporter BBEV_3194 PF00571 CBS domain BBEV_3194 PF03448 MgtE intracellular N domain BBEV_3199 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BBEV_3200 PF00158 Sigma-54 interaction domain BBEV_3200 PF02954 Bacterial regulatory protein, Fis family BBEV_3200 PF00989 PAS fold BBEV_3202 PF00465 Iron-containing alcohol dehydrogenase BBEV_3203 PF00465 Iron-containing alcohol dehydrogenase BBEV_3204 PF00171 Aldehyde dehydrogenase family BBEV_3205 PF05199 GMC oxidoreductase BBEV_3205 PF00732 GMC oxidoreductase BBEV_3206 PF01758 Sodium Bile acid symporter family BBEV_3207 PF00875 DNA photolyase BBEV_3207 PF03441 FAD binding domain of DNA photolyase BBEV_3208 PF02557 D-alanyl-D-alanine carboxypeptidase BBEV_3209 PF08245 Mur ligase middle domain BBEV_3209 PF01225 Mur ligase family, catalytic domain BBEV_3209 PF02875 Mur ligase family, glutamate ligase domain BBEV_3210 PF00733 Asparagine synthase BBEV_3210 PF13537 Glutamine amidotransferase domain BBEV_3211 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BBEV_3212 PF00380 Ribosomal protein S9/S16 BBEV_3213 PF00572 Ribosomal protein L13 BBEV_3214 PF01416 tRNA pseudouridine synthase BBEV_3215 PF02361 Cobalt transport protein BBEV_3216 PF00005 ABC transporter BBEV_3217 PF00005 ABC transporter BBEV_3218 PF01196 Ribosomal protein L17 BBEV_3219 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BBEV_3219 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BBEV_3219 PF01000 RNA polymerase Rpb3/RpoA insert domain BBEV_3220 PF00411 Ribosomal protein S11 BBEV_3221 PF00416 Ribosomal protein S13/S18 BBEV_3222 PF01176 Translation initiation factor 1A / IF-1 BBEV_3224 PF00557 Metallopeptidase family M24 BBEV_3225 PF05191 Adenylate kinase, active site lid BBEV_3226 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BBEV_3227 PF00327 Ribosomal protein L30p/L7e BBEV_3228 PF03719 Ribosomal protein S5, C-terminal domain BBEV_3228 PF00333 Ribosomal protein S5, N-terminal domain BBEV_3229 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BBEV_3230 PF00347 Ribosomal protein L6 BBEV_3231 PF00410 Ribosomal protein S8 BBEV_3232 PF00673 ribosomal L5P family C-terminus BBEV_3232 PF00281 Ribosomal protein L5 BBEV_3233 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BBEV_3233 PF00467 KOW motif BBEV_3234 PF00238 Ribosomal protein L14p/L23e BBEV_3235 PF00366 Ribosomal protein S17 BBEV_3236 PF00831 Ribosomal L29 protein BBEV_3237 PF00252 Ribosomal protein L16p/L10e BBEV_3238 PF00189 Ribosomal protein S3, C-terminal domain BBEV_3238 PF07650 KH domain BBEV_3239 PF00237 Ribosomal protein L22p/L17e BBEV_3240 PF00203 Ribosomal protein S19 BBEV_3241 PF03947 Ribosomal Proteins L2, C-terminal domain BBEV_3241 PF00181 Ribosomal Proteins L2, RNA binding domain BBEV_3242 PF00276 Ribosomal protein L23 BBEV_3243 PF00573 Ribosomal protein L4/L1 family BBEV_3244 PF00297 Ribosomal protein L3 BBEV_3245 PF00338 Ribosomal protein S10p/S20e BBEV_3248 PF00009 Elongation factor Tu GTP binding domain BBEV_3248 PF03144 Elongation factor Tu domain 2 BBEV_3248 PF03143 Elongation factor Tu C-terminal domain BBEV_3249 PF03144 Elongation factor Tu domain 2 BBEV_3249 PF00009 Elongation factor Tu GTP binding domain BBEV_3249 PF03764 Elongation factor G, domain IV BBEV_3249 PF14492 Elongation Factor G, domain II BBEV_3249 PF00679 Elongation factor G C-terminus BBEV_3250 PF00177 Ribosomal protein S7p/S5e BBEV_3251 PF00164 Ribosomal protein S12/S23 BBEV_3252 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BBEV_3253 PF04997 RNA polymerase Rpb1, domain 1 BBEV_3253 PF05000 RNA polymerase Rpb1, domain 4 BBEV_3253 PF04983 RNA polymerase Rpb1, domain 3 BBEV_3253 PF04998 RNA polymerase Rpb1, domain 5 BBEV_3253 PF00623 RNA polymerase Rpb1, domain 2 BBEV_3254 PF04560 RNA polymerase Rpb2, domain 7 BBEV_3254 PF00562 RNA polymerase Rpb2, domain 6 BBEV_3254 PF10385 RNA polymerase beta subunit external 1 domain BBEV_3254 PF04561 RNA polymerase Rpb2, domain 2 BBEV_3254 PF04563 RNA polymerase beta subunit BBEV_3254 PF04565 RNA polymerase Rpb2, domain 3 BBEV_3256 PF00542 Ribosomal protein L7/L12 C-terminal domain BBEV_3256 PF16320 Ribosomal protein L7/L12 dimerisation domain BBEV_3257 PF00466 Ribosomal protein L10 BBEV_3258 PF00687 Ribosomal protein L1p/L10e family BBEV_3259 PF00298 Ribosomal protein L11, RNA binding domain BBEV_3259 PF03946 Ribosomal protein L11, N-terminal domain BBEV_3260 PF00467 KOW motif BBEV_3260 PF02357 Transcription termination factor nusG BBEV_3261 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BBEV_3262 PF00471 Ribosomal protein L33 BBEV_3264 PF08281 Sigma-70, region 4 BBEV_3264 PF04542 Sigma-70 region 2 BBEV_3265 PF08281 Sigma-70, region 4 BBEV_3265 PF04542 Sigma-70 region 2 BBEV_3266 PF05991 YacP-like NYN domain BBEV_3267 PF08032 RNA 2'-O ribose methyltransferase substrate binding BBEV_3267 PF00588 SpoU rRNA Methylase family BBEV_3268 PF00636 Ribonuclease III domain BBEV_3269 PF01406 tRNA synthetases class I (C) catalytic domain BBEV_3269 PF09190 DALR domain BBEV_3270 PF00132 Bacterial transferase hexapeptide (six repeats) BBEV_3270 PF06426 Serine acetyltransferase, N-terminal BBEV_3271 PF00749 tRNA synthetases class I (E and Q), catalytic domain BBEV_3272 PF02542 YgbB family BBEV_3273 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BBEV_3275 PF02457 DisA bacterial checkpoint controller nucleotide-binding BBEV_3275 PF10635 DisA bacterial checkpoint controller linker region BBEV_3276 PF18073 Rubredoxin metal binding domain BBEV_3277 PF00004 ATPase family associated with various cellular activities (AAA) BBEV_3277 PF07724 AAA domain (Cdc48 subfamily) BBEV_3277 PF17871 AAA lid domain BBEV_3277 PF02861 Clp amino terminal domain, pathogenicity island component BBEV_3277 PF10431 C-terminal, D2-small domain, of ClpB protein BBEV_3278 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BBEV_3279 PF02151 UvrB/uvrC motif BBEV_3280 PF17727 CtsR C-terminal dimerization domain BBEV_3280 PF05848 CtsR N-terminal HTH domain BBEV_3281 PF02308 MgtC family BBEV_3283 PF00258 Flavodoxin BBEV_3301 PF01336 OB-fold nucleic acid binding domain BBEV_3301 PF00152 tRNA synthetases class II (D, K and N) BBEV_3302 PF01207 Dihydrouridine synthase (Dus) BBEV_3303 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BBEV_3304 PF02152 Dihydroneopterin aldolase BBEV_3305 PF00809 Pterin binding enzyme BBEV_3306 PF01063 Amino-transferase class IV BBEV_3307 PF00117 Glutamine amidotransferase class-I BBEV_3308 PF04715 Anthranilate synthase component I, N terminal region BBEV_3308 PF00425 chorismate binding enzyme BBEV_3310 PF01430 Hsp33 protein BBEV_3311 PF03309 Type III pantothenate kinase BBEV_3314 PF11734 TilS substrate C-terminal domain BBEV_3314 PF09179 TilS substrate binding domain BBEV_3314 PF01171 PP-loop family BBEV_3317 PF00575 S1 RNA binding domain BBEV_3319 PF01479 S4 domain BBEV_3320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BBEV_3320 PF03819 MazG nucleotide pyrophosphohydrolase domain BBEV_3321 PF14667 Polysaccharide biosynthesis C-terminal domain BBEV_3321 PF01943 Polysaccharide biosynthesis protein BBEV_3322 PF02559 CarD-like/TRCF domain BBEV_3322 PF17757 UvrB interaction domain BBEV_3322 PF00270 DEAD/DEAH box helicase BBEV_3322 PF03461 TRCF domain BBEV_3322 PF00271 Helicase conserved C-terminal domain BBEV_3323 PF01195 Peptidyl-tRNA hydrolase BBEV_3324 PF01386 Ribosomal L25p family BBEV_3324 PF14693 Ribosomal protein TL5, C-terminal domain BBEV_3325 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BBEV_3325 PF14572 Phosphoribosyl synthetase-associated domain BBEV_3326 PF00132 Bacterial transferase hexapeptide (six repeats) BBEV_3326 PF00483 Nucleotidyl transferase BBEV_3327 PF04026 SpoVG BBEV_3328 PF09182 Bacterial purine repressor, N-terminal BBEV_3328 PF00156 Phosphoribosyl transferase domain BBEV_3329 PF00288 GHMP kinases N terminal domain BBEV_3329 PF08544 GHMP kinases C terminal BBEV_3330 PF06257 Biofilm formation stimulator VEG BBEV_3331 PF00398 Ribosomal RNA adenine dimethylase BBEV_3332 PF13662 Toprim domain BBEV_3332 PF13331 Domain of unknown function (DUF4093) BBEV_3333 PF03990 G5-linked-Ubiquitin-like domain BBEV_3333 PF06725 3D domain BBEV_3333 PF07501 G5 domain BBEV_3334 PF01026 TatD related DNase BBEV_3335 PF08264 Anticodon-binding domain of tRNA BBEV_3335 PF01588 Putative tRNA binding domain BBEV_3335 PF09334 tRNA synthetases class I (M) BBEV_3337 PF18277 AbrB C-terminal domain BBEV_3337 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BBEV_3338 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BBEV_3339 PF05175 Methyltransferase small domain BBEV_3340 PF06156 Initiation control protein YabA BBEV_3341 PF04468 PSP1 C-terminal conserved region BBEV_3342 PF09115 DNA polymerase III, delta subunit, C terminal BBEV_3343 PF06153 Cyclic-di-AMP receptor BBEV_3344 PF02223 Thymidylate kinase BBEV_3345 PF01276 Orn/Lys/Arg decarboxylase, major domain BBEV_3345 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BBEV_3349 PF14489 QueF-like protein BBEV_3354 PF10704 Protein of unknown function (DUF2508) BBEV_3355 PF02132 RecR protein BBEV_3355 PF13662 Toprim domain BBEV_3356 PF02575 YbaB/EbfC DNA-binding family BBEV_3357 PF12169 DNA polymerase III subunits gamma and tau domain III BBEV_3360 PF14437 MafB19-like deaminase BBEV_3361 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3361 PF12911 N-terminal TM domain of oligopeptide transport permease C BBEV_3362 PF00528 Binding-protein-dependent transport system inner membrane component BBEV_3364 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_3364 PF00005 ABC transporter BBEV_3365 PF00005 ABC transporter BBEV_3365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BBEV_3367 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BBEV_3367 PF02403 Seryl-tRNA synthetase N-terminal domain BBEV_3368 PF01174 SNO glutamine amidotransferase family BBEV_3369 PF01680 SOR/SNZ family BBEV_3370 PF07943 Penicillin-binding protein 5, C-terminal domain BBEV_3370 PF00768 D-alanyl-D-alanine carboxypeptidase BBEV_3371 PF00478 IMP dehydrogenase / GMP reductase domain BBEV_3371 PF00571 CBS domain BBEV_3377 PF01966 HD domain BBEV_3377 PF00072 Response regulator receiver domain BBEV_3378 PF03989 DNA gyrase C-terminal domain, beta-propeller BBEV_3378 PF00521 DNA gyrase/topoisomerase IV, subunit A BBEV_3379 PF01751 Toprim domain BBEV_3379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BBEV_3379 PF00986 DNA gyrase B subunit, carboxyl terminus BBEV_3379 PF00204 DNA gyrase B BBEV_3380 PF04025 Domain of unknown function (DUF370)