BBEV_0003 SM00480 DNA polymerase III beta subunit BBEV_0004 SM00382 ATPases associated with a variety of cellular activities BBEV_0004 SM00760 Bacterial dnaA protein helix-turn-helix domain BBEV_0006 SM01234 BBEV_0006 BBEV_0008 SM00393 Putative single-stranded nucleic acids-binding domain BBEV_0008 SM01245 BBEV_0008 BBEV_0010 SM01228 BBEV_0010 BBEV_0012 SM00470 ParB-like nuclease domain BBEV_0015 SM00470 ParB-like nuclease domain BBEV_0024 SM00267 diguanylate cyclase BBEV_0027 SM00788 Adenylosuccinate synthetase BBEV_0035 SM00448 cheY-homologous receiver domain BBEV_0035 SM00862 Transcriptional regulatory protein, C terminal BBEV_0036 SM00091 PAS domain BBEV_0036 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0036 SM00387 Histidine kinase-like ATPases BBEV_0036 SM00388 His Kinase A (phosphoacceptor) domain BBEV_0039 SM00849 Metallo-beta-lactamase superfamily BBEV_0040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BBEV_0047 SM00363 S4 RNA-binding domain BBEV_0049 SM00267 diguanylate cyclase BBEV_0050 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_0051 SM00382 ATPases associated with a variety of cellular activities BBEV_0055 SM00421 helix_turn_helix, Lux Regulon BBEV_0055 SM00448 cheY-homologous receiver domain BBEV_0056 SM00267 diguanylate cyclase BBEV_0060 SM00450 Rhodanese Homology Domain BBEV_0065 SM00382 ATPases associated with a variety of cellular activities BBEV_0067 SM00382 ATPases associated with a variety of cellular activities BBEV_0068 SM00382 ATPases associated with a variety of cellular activities BBEV_0073 SM00642 Alpha-amylase domain BBEV_0099 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_0099 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0102 SM00640 Glycosyl hydrolases family 32 BBEV_0103 SM00448 cheY-homologous receiver domain BBEV_0105 SM00387 Histidine kinase-like ATPases BBEV_0105 SM00388 His Kinase A (phosphoacceptor) domain BBEV_0118 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_0128 SM00382 ATPases associated with a variety of cellular activities BBEV_0129 SM00382 ATPases associated with a variety of cellular activities BBEV_0130 SM00530 Helix-turn-helix XRE-family like proteins BBEV_0132 SM00836 DALR anticodon binding domain BBEV_0132 SM01016 Arginyl tRNA synthetase N terminal dom BBEV_0133 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_0133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0133 SM01049 BBEV_0133 BBEV_0134 SM00420 helix_turn_helix, Deoxyribose operon repressor BBEV_0134 SM01134 BBEV_0134 BBEV_0141 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_0142 SM00382 ATPases associated with a variety of cellular activities BBEV_0144 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_0144 SM00382 ATPases associated with a variety of cellular activities BBEV_0154 SM00382 ATPases associated with a variety of cellular activities BBEV_0159 SM00448 cheY-homologous receiver domain BBEV_0163 SM00357 Cold shock protein domain BBEV_0163 SM00382 ATPases associated with a variety of cellular activities BBEV_0163 SM00959 Rho termination factor, N-terminal domain BBEV_0166 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_0166 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0168 SM00937 BBEV_0168 BBEV_0172 SM00226 Low molecular weight phosphatase family BBEV_0173 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_0173 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0176 SM00052 Putative diguanylate phosphodiesterase BBEV_0176 SM00091 PAS domain BBEV_0176 SM00267 diguanylate cyclase BBEV_0188 SM00382 ATPases associated with a variety of cellular activities BBEV_0192 SM00387 Histidine kinase-like ATPases BBEV_0193 SM00342 helix_turn_helix, arabinose operon control protein BBEV_0193 SM00448 cheY-homologous receiver domain BBEV_0195 SM00382 ATPases associated with a variety of cellular activities BBEV_0221 SM00342 helix_turn_helix, arabinose operon control protein BBEV_0228 SM00854 Bacterial capsule synthesis protein PGA_cap BBEV_0236 SM00530 Helix-turn-helix XRE-family like proteins BBEV_0238 SM00341 Helicase and RNase D C-terminal BBEV_0239 SM00354 helix_turn _helix lactose operon repressor BBEV_0241 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BBEV_0264 SM00984 UDP binding domain BBEV_0278 SM00382 ATPases associated with a variety of cellular activities BBEV_0291 SM00984 UDP binding domain BBEV_0298 SM00382 ATPases associated with a variety of cellular activities BBEV_0305 SM00287 Bacterial SH3 domain homologues BBEV_0305 SM00646 BBEV_0305 BBEV_0306 SM00833 Cobalamin synthesis protein cobW C-terminal domain BBEV_0308 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_0310 SM00507 HNH nucleases BBEV_0312 SM00530 Helix-turn-helix XRE-family like proteins BBEV_0318 SM00382 ATPases associated with a variety of cellular activities BBEV_0319 SM00642 Alpha-amylase domain BBEV_0326 SM00421 helix_turn_helix, Lux Regulon BBEV_0328 SM00530 Helix-turn-helix XRE-family like proteins BBEV_0334 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_0351 SM00854 Bacterial capsule synthesis protein PGA_cap BBEV_0363 SM00342 helix_turn_helix, arabinose operon control protein BBEV_0369 SM00387 Histidine kinase-like ATPases BBEV_0369 SM00388 His Kinase A (phosphoacceptor) domain BBEV_0369 SM00448 cheY-homologous receiver domain BBEV_0370 SM00448 cheY-homologous receiver domain BBEV_0370 SM00862 Transcriptional regulatory protein, C terminal BBEV_0374 SM00287 Bacterial SH3 domain homologues BBEV_0374 SM00646 BBEV_0374 BBEV_0387 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BBEV_0399 SM00642 Alpha-amylase domain BBEV_0400 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BBEV_0400 SM00267 diguanylate cyclase BBEV_0409 SM00420 helix_turn_helix, Deoxyribose operon repressor BBEV_0409 SM01134 BBEV_0409 BBEV_0413 SM00267 diguanylate cyclase BBEV_0413 SM00448 cheY-homologous receiver domain BBEV_0414 SM00448 cheY-homologous receiver domain BBEV_0415 SM00387 Histidine kinase-like ATPases BBEV_0415 SM00388 His Kinase A (phosphoacceptor) domain BBEV_0418 SM00382 ATPases associated with a variety of cellular activities BBEV_0422 SM01120 BBEV_0422 BBEV_0427 SM00822 BBEV_0427 BBEV_0428 SM00487 DEAD-like helicases superfamily BBEV_0428 SM00490 helicase superfamily c-terminal domain BBEV_0430 SM00091 PAS domain BBEV_0430 SM00382 ATPases associated with a variety of cellular activities BBEV_0432 SM00382 ATPases associated with a variety of cellular activities BBEV_0433 SM00382 ATPases associated with a variety of cellular activities BBEV_0439 SM00421 helix_turn_helix, Lux Regulon BBEV_0447 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_0447 SM00895 BBEV_0447 BBEV_0464 SM00421 helix_turn_helix, Lux Regulon BBEV_0464 SM00448 cheY-homologous receiver domain BBEV_0465 SM00387 Histidine kinase-like ATPases BBEV_0465 SM00388 His Kinase A (phosphoacceptor) domain BBEV_0475 SM00796 Allophanate hydrolase subunit 1 BBEV_0477 SM00797 Allophanate hydrolase subunit 2 BBEV_0485 SM00387 Histidine kinase-like ATPases BBEV_0499 SM00387 Histidine kinase-like ATPases BBEV_0500 SM00421 helix_turn_helix, Lux Regulon BBEV_0500 SM00448 cheY-homologous receiver domain BBEV_0502 SM00487 DEAD-like helicases superfamily BBEV_0502 SM00490 helicase superfamily c-terminal domain BBEV_0512 SM00421 helix_turn_helix, Lux Regulon BBEV_0524 SM00357 Cold shock protein domain BBEV_0533 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_0535 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_0536 SM00267 diguanylate cyclase BBEV_0543 SM00642 Alpha-amylase domain BBEV_0546 SM00357 Cold shock protein domain BBEV_0549 SM01061 CAT RNA binding domain BBEV_0550 SM00957 SecA DEAD-like domain BBEV_0550 SM00958 SecA preprotein cross-linking domain BBEV_0551 SM00937 BBEV_0551 BBEV_0554 SM00382 ATPases associated with a variety of cellular activities BBEV_0557 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BBEV_0557 SM00245 tail specific protease BBEV_0558 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BBEV_0559 SM00487 DEAD-like helicases superfamily BBEV_0559 SM00490 helicase superfamily c-terminal domain BBEV_0587 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BBEV_0591 SM01192 BBEV_0591 BBEV_0591 SM01193 BBEV_0591 BBEV_0596 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_0596 SM00357 Cold shock protein domain BBEV_0596 SM00955 BBEV_0596 BBEV_0601 SM00331 Sigma factor PP2C-like phosphatases BBEV_0603 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0603 SM00387 Histidine kinase-like ATPases BBEV_0603 SM00388 His Kinase A (phosphoacceptor) domain BBEV_0604 SM00448 cheY-homologous receiver domain BBEV_0604 SM00862 Transcriptional regulatory protein, C terminal BBEV_0613 SM00382 ATPases associated with a variety of cellular activities BBEV_0613 SM00930 BBEV_0613 BBEV_0617 SM00267 diguanylate cyclase BBEV_0619 SM00382 ATPases associated with a variety of cellular activities BBEV_0627 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_0636 SM00420 helix_turn_helix, Deoxyribose operon repressor BBEV_0675 SM00893 Electron transfer flavoprotein domain BBEV_0676 SM00893 Electron transfer flavoprotein domain BBEV_0679 SM00344 helix_turn_helix ASNC type BBEV_0681 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_0683 SM00831 Cation transporter/ATPase, N-terminus BBEV_0694 SM00530 Helix-turn-helix XRE-family like proteins BBEV_0697 SM00487 DEAD-like helicases superfamily BBEV_0700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_0700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0714 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_0714 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0722 SM00852 Probable molybdopterin binding domain BBEV_0723 SM00852 Probable molybdopterin binding domain BBEV_0734 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_0744 SM00363 S4 RNA-binding domain BBEV_0755 SM00642 Alpha-amylase domain BBEV_0756 SM00642 Alpha-amylase domain BBEV_0759 SM00849 Metallo-beta-lactamase superfamily BBEV_0773 SM00842 Cell division protein FtsA BBEV_0774 SM00830 Chorismate mutase type II BBEV_0775 SM00354 helix_turn _helix lactose operon repressor BBEV_0779 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_0782 SM00363 S4 RNA-binding domain BBEV_0785 SM00382 ATPases associated with a variety of cellular activities BBEV_0798 SM00382 ATPases associated with a variety of cellular activities BBEV_0803 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_0803 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_0804 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_0810 SM00382 ATPases associated with a variety of cellular activities BBEV_0813 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_0813 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_0822 SM00382 ATPases associated with a variety of cellular activities BBEV_0833 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_0833 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0838 SM00487 DEAD-like helicases superfamily BBEV_0855 SM00530 Helix-turn-helix XRE-family like proteins BBEV_0857 SM00363 S4 RNA-binding domain BBEV_0857 SM01390 BBEV_0857 BBEV_0858 SM00267 diguanylate cyclase BBEV_0859 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BBEV_0876 SM00849 Metallo-beta-lactamase superfamily BBEV_0878 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_0881 SM00481 DNA polymerase alpha chain like domain BBEV_0882 SM00919 Malic enzyme, NAD binding domain BBEV_0882 SM01274 BBEV_0882 BBEV_0883 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_0883 SM00895 BBEV_0883 BBEV_0891 SM01329 BBEV_0891 BBEV_0894 SM00448 cheY-homologous receiver domain BBEV_0894 SM00862 Transcriptional regulatory protein, C terminal BBEV_0895 SM00091 PAS domain BBEV_0895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_0895 SM00387 Histidine kinase-like ATPases BBEV_0895 SM00388 His Kinase A (phosphoacceptor) domain BBEV_0896 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BBEV_0896 SM00474 3'-5' exonuclease BBEV_0896 SM00475 5'-3' exonuclease BBEV_0896 SM00482 DNA polymerase A domain BBEV_0897 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BBEV_0897 SM01232 BBEV_0897 BBEV_0899 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BBEV_0903 SM00382 ATPases associated with a variety of cellular activities BBEV_0904 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_0905 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BBEV_0913 SM00421 helix_turn_helix, Lux Regulon BBEV_0913 SM00448 cheY-homologous receiver domain BBEV_0914 SM00382 ATPases associated with a variety of cellular activities BBEV_0922 SM00967 RNA 2'-O ribose methyltransferase substrate binding BBEV_0924 SM00873 B3/4 domain BBEV_0924 SM00874 tRNA synthetase B5 domain BBEV_0924 SM00896 Ferredoxin-fold anticodon binding domain BBEV_0929 SM00481 DNA polymerase alpha chain like domain BBEV_0929 SM00483 DNA polymerase X family BBEV_0930 SM00463 Small MutS-related domain BBEV_0930 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BBEV_0930 SM00534 ATPase domain of DNA mismatch repair MUTS family BBEV_0937 SM00893 Electron transfer flavoprotein domain BBEV_0938 SM00893 Electron transfer flavoprotein domain BBEV_0940 SM00465 GIY-YIG type nucleases (URI domain) BBEV_0948 SM01061 CAT RNA binding domain BBEV_0951 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_0959 SM00382 ATPases associated with a variety of cellular activities BBEV_0959 SM00994 ClpX C4-type zinc finger BBEV_0959 SM01086 C-terminal, D2-small domain, of ClpB protein BBEV_0960 SM00382 ATPases associated with a variety of cellular activities BBEV_0960 SM00464 Found in ATP-dependent protease La (LON) BBEV_0962 SM00382 ATPases associated with a variety of cellular activities BBEV_0967 SM01004 Delta-aminolevulinic acid dehydratase BBEV_0969 SM00834 Putative regulatory protein BBEV_0973 SM00387 Histidine kinase-like ATPases BBEV_0974 SM00421 helix_turn_helix, Lux Regulon BBEV_0974 SM00448 cheY-homologous receiver domain BBEV_0978 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BBEV_0978 SM00267 diguanylate cyclase BBEV_0981 SM00382 ATPases associated with a variety of cellular activities BBEV_0982 SM00382 ATPases associated with a variety of cellular activities BBEV_1000 SM00354 helix_turn _helix lactose operon repressor BBEV_1007 SM00849 Metallo-beta-lactamase superfamily BBEV_1011 SM00382 ATPases associated with a variety of cellular activities BBEV_1014 SM00421 helix_turn_helix, Lux Regulon BBEV_1014 SM00448 cheY-homologous receiver domain BBEV_1015 SM00450 Rhodanese Homology Domain BBEV_1016 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_1017 SM00450 Rhodanese Homology Domain BBEV_1018 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_1022 SM00450 Rhodanese Homology Domain BBEV_1023 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BBEV_1023 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BBEV_1026 SM00052 Putative diguanylate phosphodiesterase BBEV_1026 SM00267 diguanylate cyclase BBEV_1027 SM00448 cheY-homologous receiver domain BBEV_1027 SM00862 Transcriptional regulatory protein, C terminal BBEV_1028 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_1028 SM00387 Histidine kinase-like ATPases BBEV_1028 SM00388 His Kinase A (phosphoacceptor) domain BBEV_1030 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_1042 SM00938 Nitrogen regulatory protein P-II BBEV_1045 SM01329 BBEV_1045 BBEV_1046 SM00917 LeuA allosteric (dimerisation) domain BBEV_1068 SM00382 ATPases associated with a variety of cellular activities BBEV_1071 SM00421 helix_turn_helix, Lux Regulon BBEV_1074 SM00382 ATPases associated with a variety of cellular activities BBEV_1083 SM00448 cheY-homologous receiver domain BBEV_1083 SM00862 Transcriptional regulatory protein, C terminal BBEV_1084 SM00387 Histidine kinase-like ATPases BBEV_1084 SM00388 His Kinase A (phosphoacceptor) domain BBEV_1085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_1089 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_1092 SM00382 ATPases associated with a variety of cellular activities BBEV_1102 SM01317 BBEV_1102 BBEV_1106 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BBEV_1107 SM00382 ATPases associated with a variety of cellular activities BBEV_1111 SM01323 BBEV_1111 BBEV_1127 SM00382 ATPases associated with a variety of cellular activities BBEV_1132 SM00028 Tetratricopeptide repeats BBEV_1133 SM00382 ATPases associated with a variety of cellular activities BBEV_1135 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BBEV_1137 SM00732 Likely ribonuclease with RNase H fold. BBEV_1143 SM00382 ATPases associated with a variety of cellular activities BBEV_1150 SM00354 helix_turn _helix lactose operon repressor BBEV_1151 SM00642 Alpha-amylase domain BBEV_1153 SM00357 Cold shock protein domain BBEV_1167 SM00271 DnaJ molecular chaperone homology domain BBEV_1169 SM00052 Putative diguanylate phosphodiesterase BBEV_1169 SM00091 PAS domain BBEV_1169 SM00267 diguanylate cyclase BBEV_1174 SM00014 Acid phosphatase homologues BBEV_1179 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_1196 SM01103 BBEV_1196 BBEV_1198 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_1201 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BBEV_1202 SM00849 Metallo-beta-lactamase superfamily BBEV_1206 SM00838 Elongation factor G C-terminus BBEV_1207 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_1211 SM00271 DnaJ molecular chaperone homology domain BBEV_1214 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_1221 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_1228 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_1231 SM00400 zinc finger BBEV_1231 SM00493 BBEV_1231 BBEV_1239 SM01058 CarD-like/TRCF domain BBEV_1240 SM00487 DEAD-like helicases superfamily BBEV_1240 SM00490 helicase superfamily c-terminal domain BBEV_1241 SM00518 AP endonuclease family 2 BBEV_1242 SM00382 ATPases associated with a variety of cellular activities BBEV_1247 SM00382 ATPases associated with a variety of cellular activities BBEV_1267 SM00028 Tetratricopeptide repeats BBEV_1271 SM00382 ATPases associated with a variety of cellular activities BBEV_1277 SM00849 Metallo-beta-lactamase superfamily BBEV_1291 SM00450 Rhodanese Homology Domain BBEV_1294 SM00529 Helix-turn-helix diphteria tox regulatory element BBEV_1298 SM00841 Elongation factor P, C-terminal BBEV_1298 SM01185 BBEV_1298 BBEV_1302 SM00878 Biotin carboxylase C-terminal domain BBEV_1310 SM00861 Transketolase, pyrimidine binding domain BBEV_1311 SM00363 S4 RNA-binding domain BBEV_1316 SM00091 PAS domain BBEV_1316 SM00382 ATPases associated with a variety of cellular activities BBEV_1318 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_1322 SM00861 Transketolase, pyrimidine binding domain BBEV_1333 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_1341 SM00642 Alpha-amylase domain BBEV_1342 SM00354 helix_turn _helix lactose operon repressor BBEV_1349 SM00422 helix_turn_helix, mercury resistance BBEV_1353 SM00822 BBEV_1353 BBEV_1355 SM00226 Low molecular weight phosphatase family BBEV_1357 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain BBEV_1365 SM00563 Phosphate acyltransferases BBEV_1378 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BBEV_1396 SM00363 S4 RNA-binding domain BBEV_1400 SM00448 cheY-homologous receiver domain BBEV_1400 SM00862 Transcriptional regulatory protein, C terminal BBEV_1401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_1401 SM00387 Histidine kinase-like ATPases BBEV_1401 SM00388 His Kinase A (phosphoacceptor) domain BBEV_1402 SM00852 Probable molybdopterin binding domain BBEV_1406 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_1406 SM00895 BBEV_1406 BBEV_1407 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_1407 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_1418 SM00422 helix_turn_helix, mercury resistance BBEV_1419 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_1421 SM00870 BBEV_1421 BBEV_1426 SM00563 Phosphate acyltransferases BBEV_1427 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_1428 SM01240 BBEV_1428 BBEV_1430 SM01207 BBEV_1430 BBEV_1434 SM00411 bacterial (prokaryotic) histone like domain BBEV_1442 SM00562 BBEV_1442 BBEV_1443 SM00138 Methyltransferase, chemotaxis proteins BBEV_1455 SM00028 Tetratricopeptide repeats BBEV_1456 SM00914 BBEV_1456 BBEV_1466 SM00851 MGS-like domain BBEV_1474 SM00479 BBEV_1474 BBEV_1474 SM00487 DEAD-like helicases superfamily BBEV_1474 SM00491 BBEV_1474 BBEV_1480 SM00478 endonuclease III BBEV_1480 SM00525 BBEV_1480 BBEV_1490 SM00567 E-Z type HEAT repeats BBEV_1490 SM00932 Scaffold protein Nfu/NifU N terminal BBEV_1497 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BBEV_1497 SM00267 diguanylate cyclase BBEV_1500 SM00046 Diacylglycerol kinase catalytic domain (presumed) BBEV_1528 SM00861 Transketolase, pyrimidine binding domain BBEV_1533 SM00966 SpoVT / AbrB like domain BBEV_1537 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_1538 SM00387 Histidine kinase-like ATPases BBEV_1538 SM00388 His Kinase A (phosphoacceptor) domain BBEV_1552 SM00382 ATPases associated with a variety of cellular activities BBEV_1553 SM00382 ATPases associated with a variety of cellular activities BBEV_1560 SM00052 Putative diguanylate phosphodiesterase BBEV_1560 SM00091 PAS domain BBEV_1560 SM00267 diguanylate cyclase BBEV_1563 SM01245 BBEV_1563 BBEV_1564 SM00046 Diacylglycerol kinase catalytic domain (presumed) BBEV_1567 SM00267 diguanylate cyclase BBEV_1567 SM00448 cheY-homologous receiver domain BBEV_1574 SM00382 ATPases associated with a variety of cellular activities BBEV_1592 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_1595 SM01400 BBEV_1595 BBEV_1599 SM01130 BBEV_1599 BBEV_1606 SM00382 ATPases associated with a variety of cellular activities BBEV_1614 SM00155 Phospholipase D. Active site motifs. BBEV_1615 SM00859 Semialdehyde dehydrogenase, NAD binding domain BBEV_1619 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BBEV_1620 SM00851 MGS-like domain BBEV_1620 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BBEV_1628 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BBEV_1628 SM00475 5'-3' exonuclease BBEV_1636 SM00838 Elongation factor G C-terminus BBEV_1639 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BBEV_1648 SM00479 BBEV_1648 BBEV_1653 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BBEV_1653 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BBEV_1653 SM00493 BBEV_1653 BBEV_1662 SM00434 DNA Topoisomerase IV BBEV_1663 SM00387 Histidine kinase-like ATPases BBEV_1663 SM00433 TopoisomeraseII BBEV_1664 SM00881 CoA binding domain BBEV_1667 SM00382 ATPases associated with a variety of cellular activities BBEV_1670 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_1671 SM00981 BBEV_1671 BBEV_1675 SM00479 BBEV_1675 BBEV_1676 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_1678 SM00487 DEAD-like helicases superfamily BBEV_1678 SM00490 helicase superfamily c-terminal domain BBEV_1683 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_1686 SM00260 Two component signalling adaptor domain BBEV_1686 SM00448 cheY-homologous receiver domain BBEV_1689 SM00382 ATPases associated with a variety of cellular activities BBEV_1690 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_1692 SM00382 ATPases associated with a variety of cellular activities BBEV_1693 SM00642 Alpha-amylase domain BBEV_1702 SM00052 Putative diguanylate phosphodiesterase BBEV_1703 SM00481 DNA polymerase alpha chain like domain BBEV_1707 SM00382 ATPases associated with a variety of cellular activities BBEV_1715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_1716 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_1720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_1734 SM00450 Rhodanese Homology Domain BBEV_1736 SM00861 Transketolase, pyrimidine binding domain BBEV_1738 SM00857 Resolvase, N terminal domain BBEV_1742 SM01230 BBEV_1742 BBEV_1748 SM00853 MutL C terminal dimerisation domain BBEV_1748 SM01340 BBEV_1748 BBEV_1749 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BBEV_1749 SM00534 ATPase domain of DNA mismatch repair MUTS family BBEV_1751 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_1753 SM00829 Enoylreductase BBEV_1759 SM00322 K homology RNA-binding domain BBEV_1759 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_1760 SM00382 ATPases associated with a variety of cellular activities BBEV_1761 SM00487 DEAD-like helicases superfamily BBEV_1761 SM00490 helicase superfamily c-terminal domain BBEV_1762 SM00852 Probable molybdopterin binding domain BBEV_1764 SM00530 Helix-turn-helix XRE-family like proteins BBEV_1769 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_1769 SM00866 BBEV_1769 BBEV_1770 SM00382 ATPases associated with a variety of cellular activities BBEV_1770 SM00843 BBEV_1770 BBEV_1771 SM00849 Metallo-beta-lactamase superfamily BBEV_1772 SM01130 BBEV_1772 BBEV_1774 SM00859 Semialdehyde dehydrogenase, NAD binding domain BBEV_1776 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_1776 SM00322 K homology RNA-binding domain BBEV_1777 SM01387 BBEV_1777 BBEV_1778 SM00904 Riboflavin kinase BBEV_1785 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_1785 SM00322 K homology RNA-binding domain BBEV_1787 SM00479 BBEV_1787 BBEV_1787 SM00481 DNA polymerase alpha chain like domain BBEV_1804 SM00260 Two component signalling adaptor domain BBEV_1805 SM00073 Histidine Phosphotransfer domain BBEV_1805 SM00260 Two component signalling adaptor domain BBEV_1805 SM00387 Histidine kinase-like ATPases BBEV_1805 SM01231 BBEV_1805 BBEV_1806 SM00448 cheY-homologous receiver domain BBEV_1808 SM00382 ATPases associated with a variety of cellular activities BBEV_1808 SM00962 SRP54-type protein, GTPase domain BBEV_1815 SM00448 cheY-homologous receiver domain BBEV_1826 SM00382 ATPases associated with a variety of cellular activities BBEV_1834 SM00382 ATPases associated with a variety of cellular activities BBEV_1834 SM01086 C-terminal, D2-small domain, of ClpB protein BBEV_1837 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BBEV_1837 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BBEV_1837 SM00493 BBEV_1837 BBEV_1839 SM00881 CoA binding domain BBEV_1852 SM00382 ATPases associated with a variety of cellular activities BBEV_1852 SM00962 SRP54-type protein, GTPase domain BBEV_1852 SM00963 SRP54-type protein, helical bundle domain BBEV_1854 SM00382 ATPases associated with a variety of cellular activities BBEV_1854 SM00962 SRP54-type protein, GTPase domain BBEV_1854 SM00963 SRP54-type protein, helical bundle domain BBEV_1855 SM00968 SMC proteins Flexible Hinge Domain BBEV_1857 SM01298 BBEV_1857 BBEV_1858 SM00358 Double-stranded RNA binding motif BBEV_1858 SM00535 Ribonuclease III family BBEV_1860 SM00822 BBEV_1860 BBEV_1861 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BBEV_1864 SM00487 DEAD-like helicases superfamily BBEV_1864 SM00490 helicase superfamily c-terminal domain BBEV_1868 SM01120 BBEV_1868 BBEV_1868 SM01121 BBEV_1868 BBEV_1871 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BBEV_1875 SM00220 Serine/Threonine protein kinases, catalytic domain BBEV_1875 SM00740 BBEV_1875 BBEV_1876 SM00331 Sigma factor PP2C-like phosphatases BBEV_1876 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BBEV_1879 SM00487 DEAD-like helicases superfamily BBEV_1879 SM00490 helicase superfamily c-terminal domain BBEV_1881 SM01409 BBEV_1881 BBEV_1882 SM00072 Guanylate kinase homologues. BBEV_1886 SM00382 ATPases associated with a variety of cellular activities BBEV_1887 SM00382 ATPases associated with a variety of cellular activities BBEV_1889 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BBEV_1892 SM00851 MGS-like domain BBEV_1892 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BBEV_1893 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BBEV_1898 SM00363 S4 RNA-binding domain BBEV_1902 SM00363 S4 RNA-binding domain BBEV_1906 SM00864 Tubulin/FtsZ family, GTPase domain BBEV_1906 SM00865 Tubulin/FtsZ family, C-terminal domain BBEV_1907 SM00842 Cell division protein FtsA BBEV_1918 SM00740 BBEV_1918 BBEV_1962 SM00861 Transketolase, pyrimidine binding domain BBEV_1964 SM01245 BBEV_1964 BBEV_1968 SM00849 Metallo-beta-lactamase superfamily BBEV_1977 SM00382 ATPases associated with a variety of cellular activities BBEV_1983 SM00487 DEAD-like helicases superfamily BBEV_1983 SM00490 helicase superfamily c-terminal domain BBEV_1999 SM00052 Putative diguanylate phosphodiesterase BBEV_1999 SM00267 diguanylate cyclase BBEV_2000 SM00091 PAS domain BBEV_2001 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_2010 SM00954 Region found in RelA / SpoT proteins BBEV_2011 SM01118 BBEV_2011 BBEV_2021 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_2024 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_2024 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_2026 SM00825 Beta-ketoacyl synthase BBEV_2029 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_2029 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_2031 SM00852 Probable molybdopterin binding domain BBEV_2041 SM00932 Scaffold protein Nfu/NifU N terminal BBEV_2043 SM00487 DEAD-like helicases superfamily BBEV_2043 SM00490 helicase superfamily c-terminal domain BBEV_2046 SM00450 Rhodanese Homology Domain BBEV_2048 SM00354 helix_turn _helix lactose operon repressor BBEV_2053 SM00342 helix_turn_helix, arabinose operon control protein BBEV_2055 SM00932 Scaffold protein Nfu/NifU N terminal BBEV_2062 SM00450 Rhodanese Homology Domain BBEV_2064 SM00354 helix_turn _helix lactose operon repressor BBEV_2069 SM00342 helix_turn_helix, arabinose operon control protein BBEV_2078 SM00729 Elongator protein 3, MiaB family, Radical SAM BBEV_2080 SM00052 Putative diguanylate phosphodiesterase BBEV_2083 SM00226 Low molecular weight phosphatase family BBEV_2085 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_2085 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_2091 SM00382 ATPases associated with a variety of cellular activities BBEV_2104 SM00567 E-Z type HEAT repeats BBEV_2114 SM00450 Rhodanese Homology Domain BBEV_2117 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BBEV_2118 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_2119 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_2124 SM00382 ATPases associated with a variety of cellular activities BBEV_2125 SM00756 BBEV_2125 BBEV_2128 SM00954 Region found in RelA / SpoT proteins BBEV_2135 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2137 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2137 SM00387 Histidine kinase-like ATPases BBEV_2138 SM00421 helix_turn_helix, Lux Regulon BBEV_2138 SM00448 cheY-homologous receiver domain BBEV_2140 SM01120 BBEV_2140 BBEV_2140 SM01121 BBEV_2140 BBEV_2142 SM01021 Bacteriorhodopsin-like protein BBEV_2147 SM00382 ATPases associated with a variety of cellular activities BBEV_2164 SM00487 DEAD-like helicases superfamily BBEV_2164 SM00490 helicase superfamily c-terminal domain BBEV_2176 SM00382 ATPases associated with a variety of cellular activities BBEV_2179 SM00487 DEAD-like helicases superfamily BBEV_2179 SM00490 helicase superfamily c-terminal domain BBEV_2189 SM00091 PAS domain BBEV_2189 SM00382 ATPases associated with a variety of cellular activities BBEV_2192 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_2194 SM00420 helix_turn_helix, Deoxyribose operon repressor BBEV_2194 SM01134 BBEV_2194 BBEV_2200 SM00861 Transketolase, pyrimidine binding domain BBEV_2208 SM00448 cheY-homologous receiver domain BBEV_2209 SM00387 Histidine kinase-like ATPases BBEV_2212 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2215 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2235 SM00382 ATPases associated with a variety of cellular activities BBEV_2253 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2258 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2265 SM00257 Lysin motif BBEV_2295 SM00382 ATPases associated with a variety of cellular activities BBEV_2301 SM00267 diguanylate cyclase BBEV_2301 SM00448 cheY-homologous receiver domain BBEV_2306 SM00478 endonuclease III BBEV_2306 SM00525 BBEV_2306 BBEV_2313 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_2313 SM00866 BBEV_2313 BBEV_2320 SM00382 ATPases associated with a variety of cellular activities BBEV_2321 SM00382 ATPases associated with a variety of cellular activities BBEV_2327 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_2340 SM00855 Phosphoglycerate mutase family BBEV_2349 SM00849 Metallo-beta-lactamase superfamily BBEV_2351 SM00563 Phosphate acyltransferases BBEV_2360 SM00947 Carbonic anhydrase BBEV_2362 SM00450 Rhodanese Homology Domain BBEV_2368 SM00382 ATPases associated with a variety of cellular activities BBEV_2370 SM00903 Flavin reductase like domain BBEV_2372 SM00341 Helicase and RNase D C-terminal BBEV_2372 SM00487 DEAD-like helicases superfamily BBEV_2372 SM00490 helicase superfamily c-terminal domain BBEV_2372 SM00956 BBEV_2372 BBEV_2377 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_2378 SM00052 Putative diguanylate phosphodiesterase BBEV_2378 SM00267 diguanylate cyclase BBEV_2378 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2380 SM00382 ATPases associated with a variety of cellular activities BBEV_2381 SM00382 ATPases associated with a variety of cellular activities BBEV_2383 SM00642 Alpha-amylase domain BBEV_2392 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BBEV_2392 SM00091 PAS domain BBEV_2392 SM00267 diguanylate cyclase BBEV_2394 SM00354 helix_turn _helix lactose operon repressor BBEV_2399 SM00382 ATPases associated with a variety of cellular activities BBEV_2401 SM00072 Guanylate kinase homologues. BBEV_2406 SM00342 helix_turn_helix, arabinose operon control protein BBEV_2407 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2408 SM00342 helix_turn_helix, arabinose operon control protein BBEV_2408 SM00448 cheY-homologous receiver domain BBEV_2423 SM00421 helix_turn_helix, Lux Regulon BBEV_2426 SM00052 Putative diguanylate phosphodiesterase BBEV_2426 SM00267 diguanylate cyclase BBEV_2436 SM00450 Rhodanese Homology Domain BBEV_2437 SM00450 Rhodanese Homology Domain BBEV_2439 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_2442 SM00220 Serine/Threonine protein kinases, catalytic domain BBEV_2448 SM00052 Putative diguanylate phosphodiesterase BBEV_2448 SM00267 diguanylate cyclase BBEV_2449 SM00829 Enoylreductase BBEV_2469 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_2473 SM00421 helix_turn_helix, Lux Regulon BBEV_2473 SM00448 cheY-homologous receiver domain BBEV_2474 SM00387 Histidine kinase-like ATPases BBEV_2476 SM00422 helix_turn_helix, mercury resistance BBEV_2483 SM00382 ATPases associated with a variety of cellular activities BBEV_2487 SM00855 Phosphoglycerate mutase family BBEV_2492 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BBEV_2492 SM00091 PAS domain BBEV_2492 SM00267 diguanylate cyclase BBEV_2492 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_2493 SM00014 Acid phosphatase homologues BBEV_2499 SM00382 ATPases associated with a variety of cellular activities BBEV_2511 SM00448 cheY-homologous receiver domain BBEV_2511 SM00850 LytTr DNA-binding domain BBEV_2517 SM00342 helix_turn_helix, arabinose operon control protein BBEV_2522 SM00858 BBEV_2522 BBEV_2542 SM00530 Helix-turn-helix XRE-family like proteins BBEV_2544 SM00530 Helix-turn-helix XRE-family like proteins BBEV_2561 SM00857 Resolvase, N terminal domain BBEV_2573 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BBEV_2575 SM01133 BBEV_2575 BBEV_2578 SM00046 Diacylglycerol kinase catalytic domain (presumed) BBEV_2580 SM00845 GatB domain BBEV_2584 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BBEV_2584 SM00292 breast cancer carboxy-terminal domain BBEV_2584 SM00532 Ligase N family BBEV_2587 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_2587 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2589 SM00487 DEAD-like helicases superfamily BBEV_2589 SM00490 helicase superfamily c-terminal domain BBEV_2596 SM00833 Cobalamin synthesis protein cobW C-terminal domain BBEV_2611 SM00382 ATPases associated with a variety of cellular activities BBEV_2619 SM01266 BBEV_2619 BBEV_2620 SM01209 BBEV_2620 BBEV_2620 SM01210 BBEV_2620 BBEV_2621 SM00798 AICARFT/IMPCHase bienzyme BBEV_2621 SM00851 MGS-like domain BBEV_2626 SM01211 BBEV_2626 BBEV_2629 SM00998 Adenylosuccinate lyase C-terminus BBEV_2631 SM01001 AIR carboxylase BBEV_2634 SM00382 ATPases associated with a variety of cellular activities BBEV_2634 SM01086 C-terminal, D2-small domain, of ClpB protein BBEV_2636 SM00387 Histidine kinase-like ATPases BBEV_2640 SM00899 BBEV_2640 BBEV_2643 SM00460 Transglutaminase/protease-like homologues BBEV_2646 SM00052 Putative diguanylate phosphodiesterase BBEV_2646 SM00267 diguanylate cyclase BBEV_2646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2646 SM01049 BBEV_2646 BBEV_2649 SM00450 Rhodanese Homology Domain BBEV_2650 SM00382 ATPases associated with a variety of cellular activities BBEV_2651 SM00382 ATPases associated with a variety of cellular activities BBEV_2652 SM00052 Putative diguanylate phosphodiesterase BBEV_2652 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BBEV_2652 SM00267 diguanylate cyclase BBEV_2652 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2657 SM00060 Fibronectin type 3 domain BBEV_2658 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BBEV_2658 SM01080 BBEV_2658 BBEV_2659 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_2659 SM00382 ATPases associated with a variety of cellular activities BBEV_2660 SM00448 cheY-homologous receiver domain BBEV_2660 SM00862 Transcriptional regulatory protein, C terminal BBEV_2661 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2661 SM00387 Histidine kinase-like ATPases BBEV_2661 SM00388 His Kinase A (phosphoacceptor) domain BBEV_2666 SM00450 Rhodanese Homology Domain BBEV_2666 SM00849 Metallo-beta-lactamase superfamily BBEV_2695 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BBEV_2696 SM01092 CO dehydrogenase flavoprotein C-terminal domain BBEV_2704 SM00382 ATPases associated with a variety of cellular activities BBEV_2712 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_2713 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BBEV_2713 SM01232 BBEV_2713 BBEV_2715 SM00986 Uracil DNA glycosylase superfamily BBEV_2715 SM00987 UreE urease accessory protein, C-terminal domain BBEV_2725 SM00870 BBEV_2725 BBEV_2726 SM00387 Histidine kinase-like ATPases BBEV_2727 SM00448 cheY-homologous receiver domain BBEV_2730 SM00387 Histidine kinase-like ATPases BBEV_2730 SM00388 His Kinase A (phosphoacceptor) domain BBEV_2730 SM00448 cheY-homologous receiver domain BBEV_2731 SM00448 cheY-homologous receiver domain BBEV_2731 SM00862 Transcriptional regulatory protein, C terminal BBEV_2731 SM01043 Bacterial transcriptional activator domain BBEV_2733 SM00382 ATPases associated with a variety of cellular activities BBEV_2735 SM00861 Transketolase, pyrimidine binding domain BBEV_2737 SM00829 Enoylreductase BBEV_2744 SM00100 Cyclic nucleotide-monophosphate binding domain BBEV_2744 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_2759 SM00886 Stress responsive A/B Barrel Domain BBEV_2765 SM00883 Chaperonin 10 Kd subunit BBEV_2768 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BBEV_2772 SM00382 ATPases associated with a variety of cellular activities BBEV_2772 SM00448 cheY-homologous receiver domain BBEV_2773 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2773 SM00387 Histidine kinase-like ATPases BBEV_2773 SM00388 His Kinase A (phosphoacceptor) domain BBEV_2776 SM00881 CoA binding domain BBEV_2778 SM00382 ATPases associated with a variety of cellular activities BBEV_2785 SM00382 ATPases associated with a variety of cellular activities BBEV_2786 SM00382 ATPases associated with a variety of cellular activities BBEV_2801 SM00731 SprT homologues. BBEV_2802 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_2802 SM00732 Likely ribonuclease with RNase H fold. BBEV_2803 SM00331 Sigma factor PP2C-like phosphatases BBEV_2807 SM00331 Sigma factor PP2C-like phosphatases BBEV_2808 SM00387 Histidine kinase-like ATPases BBEV_2813 SM01005 Alanine racemase, C-terminal domain BBEV_2819 SM00382 ATPases associated with a variety of cellular activities BBEV_2824 SM00091 PAS domain BBEV_2824 SM00382 ATPases associated with a variety of cellular activities BBEV_2829 SM00903 Flavin reductase like domain BBEV_2830 SM00052 Putative diguanylate phosphodiesterase BBEV_2830 SM00091 PAS domain BBEV_2830 SM00267 diguanylate cyclase BBEV_2838 SM00354 helix_turn _helix lactose operon repressor BBEV_2839 SM00357 Cold shock protein domain BBEV_2845 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_2846 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BBEV_2847 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BBEV_2848 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_2848 SM00924 MgtE intracellular N domain BBEV_2851 SM00062 Bacterial periplasmic substrate-binding proteins BBEV_2855 SM01131 BBEV_2855 BBEV_2856 SM01018 B12 binding domain BBEV_2869 SM00420 helix_turn_helix, Deoxyribose operon repressor BBEV_2873 SM00382 ATPases associated with a variety of cellular activities BBEV_2874 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_2879 SM00829 Enoylreductase BBEV_2886 SM00267 diguanylate cyclase BBEV_2890 SM00450 Rhodanese Homology Domain BBEV_2890 SM00849 Metallo-beta-lactamase superfamily BBEV_2900 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_2909 SM00354 helix_turn _helix lactose operon repressor BBEV_2910 SM01038 Beta galactosidase small chain BBEV_2914 SM00419 helix_turn_helix, cAMP Regulatory protein BBEV_2917 SM00347 helix_turn_helix multiple antibiotic resistance protein BBEV_2919 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BBEV_2919 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_2923 SM00448 cheY-homologous receiver domain BBEV_2923 SM00862 Transcriptional regulatory protein, C terminal BBEV_2927 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BBEV_2961 SM00091 PAS domain BBEV_2961 SM00382 ATPases associated with a variety of cellular activities BBEV_2975 SM01251 BBEV_2975 BBEV_2983 SM00382 ATPases associated with a variety of cellular activities BBEV_2984 SM00382 ATPases associated with a variety of cellular activities BBEV_2989 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_2989 SM00382 ATPases associated with a variety of cellular activities BBEV_2992 SM00382 ATPases associated with a variety of cellular activities BBEV_2996 SM00450 Rhodanese Homology Domain BBEV_2999 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_3002 SM01007 Class II Aldolase and Adducin N-terminal domain BBEV_3007 SM00813 Alpha-L-arabinofuranosidase C-terminus BBEV_3010 SM00382 ATPases associated with a variety of cellular activities BBEV_3011 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BBEV_3018 SM00354 helix_turn _helix lactose operon repressor BBEV_3023 SM00448 cheY-homologous receiver domain BBEV_3023 SM00862 Transcriptional regulatory protein, C terminal BBEV_3024 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BBEV_3024 SM00387 Histidine kinase-like ATPases BBEV_3024 SM00388 His Kinase A (phosphoacceptor) domain BBEV_3034 SM00530 Helix-turn-helix XRE-family like proteins BBEV_3049 SM00354 helix_turn _helix lactose operon repressor BBEV_3056 SM00387 Histidine kinase-like ATPases BBEV_3057 SM00421 helix_turn_helix, Lux Regulon BBEV_3057 SM00448 cheY-homologous receiver domain BBEV_3060 SM00155 Phospholipase D. Active site motifs. BBEV_3066 SM01321 BBEV_3066 BBEV_3072 SM00342 helix_turn_helix, arabinose operon control protein BBEV_3074 SM00900 BBEV_3074 BBEV_3077 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BBEV_3077 SM00091 PAS domain BBEV_3077 SM00267 diguanylate cyclase BBEV_3077 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_3086 SM00382 ATPases associated with a variety of cellular activities BBEV_3089 SM00530 Helix-turn-helix XRE-family like proteins BBEV_3097 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_3097 SM00866 BBEV_3097 BBEV_3110 SM00382 ATPases associated with a variety of cellular activities BBEV_3122 SM00704 CDGSH-type zinc finger. Function unknown. BBEV_3127 SM00530 Helix-turn-helix XRE-family like proteins BBEV_3129 SM00357 Cold shock protein domain BBEV_3131 SM00966 SpoVT / AbrB like domain BBEV_3148 SM00267 diguanylate cyclase BBEV_3154 SM00487 DEAD-like helicases superfamily BBEV_3161 SM00829 Enoylreductase BBEV_3190 SM00345 helix_turn_helix gluconate operon transcriptional repressor BBEV_3190 SM00866 BBEV_3190 BBEV_3193 SM00014 Acid phosphatase homologues BBEV_3194 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_3194 SM00924 MgtE intracellular N domain BBEV_3200 SM00091 PAS domain BBEV_3200 SM00382 ATPases associated with a variety of cellular activities BBEV_3216 SM00382 ATPases associated with a variety of cellular activities BBEV_3217 SM00382 ATPases associated with a variety of cellular activities BBEV_3219 SM00662 RNA polymerases D BBEV_3222 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_3233 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BBEV_3234 SM01374 BBEV_3234 BBEV_3238 SM00322 K homology RNA-binding domain BBEV_3241 SM01382 BBEV_3241 BBEV_3241 SM01383 BBEV_3241 BBEV_3245 SM01403 BBEV_3245 BBEV_3249 SM00838 Elongation factor G C-terminus BBEV_3249 SM00889 Elongation factor G, domain IV BBEV_3253 SM00663 RNA polymerase I subunit A N-terminus BBEV_3259 SM00649 Ribosomal protein L11/L12 BBEV_3260 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BBEV_3267 SM00967 RNA 2'-O ribose methyltransferase substrate binding BBEV_3268 SM00535 Ribonuclease III family BBEV_3269 SM00840 BBEV_3269 BBEV_3274 SM00670 Large family of predicted nucleotide-binding domains BBEV_3276 SM00382 ATPases associated with a variety of cellular activities BBEV_3277 SM00382 ATPases associated with a variety of cellular activities BBEV_3277 SM01086 C-terminal, D2-small domain, of ClpB protein BBEV_3304 SM00905 Dihydroneopterin aldolase BBEV_3312 SM00382 ATPases associated with a variety of cellular activities BBEV_3314 SM00977 TilS substrate C-terminal domain BBEV_3317 SM00316 Ribosomal protein S1-like RNA-binding domain BBEV_3319 SM00363 S4 RNA-binding domain BBEV_3322 SM00487 DEAD-like helicases superfamily BBEV_3322 SM00490 helicase superfamily c-terminal domain BBEV_3322 SM00982 BBEV_3322 BBEV_3322 SM01058 CarD-like/TRCF domain BBEV_3325 SM01400 BBEV_3325 BBEV_3331 SM00650 Ribosomal RNA adenine dimethylases BBEV_3332 SM00493 BBEV_3332 BBEV_3333 SM01208 BBEV_3333 BBEV_3337 SM00966 SpoVT / AbrB like domain BBEV_3355 SM00493 BBEV_3355 BBEV_3357 SM00382 ATPases associated with a variety of cellular activities BBEV_3364 SM00382 ATPases associated with a variety of cellular activities BBEV_3365 SM00382 ATPases associated with a variety of cellular activities BBEV_3370 SM00936 Penicillin-binding protein 5, C-terminal domain BBEV_3371 SM00116 Domain in cystathionine beta-synthase and other proteins. BBEV_3371 SM01240 BBEV_3371 BBEV_3377 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BBEV_3378 SM00434 DNA Topoisomerase IV BBEV_3379 SM00387 Histidine kinase-like ATPases BBEV_3379 SM00433 TopoisomeraseII