locus-tag class description AS54_1 PF03458 UPF0126 domain AS54_1005 PF00083 Sugar (and other) transporter AS54_1006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1006 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS54_1007 PF12431 Transcriptional regulator AS54_1007 PF00072 Response regulator receiver domain AS54_1007 PF08279 HTH domain AS54_1008 PF03401 Tripartite tricarboxylate transporter family receptor AS54_1010 PF00589 Phage integrase family AS54_1011 PF00145 C-5 cytosine-specific DNA methylase AS54_1012 PF00145 C-5 cytosine-specific DNA methylase AS54_1013 PF00665 Integrase core domain AS54_1013 PF13333 Integrase core domain AS54_1013 PF13276 HTH-like domain AS54_1015 PF07728 AAA domain (dynein-related subfamily) AS54_1015 PF12102 Domain of unknown function (DUF3578) AS54_1018 PF07728 AAA domain (dynein-related subfamily) AS54_1019 PF09563 LlaJI restriction endonuclease AS54_1022 PF00772 DnaB-like helicase N terminal domain AS54_1022 PF03796 DnaB-like helicase C terminal domain AS54_1025 PF01925 Sulfite exporter TauE/SafE AS54_1027 PF07690 Major Facilitator Superfamily AS54_1037 PF00550 Phosphopantetheine attachment site AS54_1037 PF07993 Male sterility protein AS54_1038 PF00440 Bacterial regulatory proteins, tetR family AS54_1038 PF18665 Tetracyclin repressor-like, C-terminal domain AS54_1041 PF01066 CDP-alcohol phosphatidyltransferase AS54_1047 PF02733 Dak1 domain AS54_1049 PF02733 Dak1 domain AS54_105 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AS54_105 PF01276 Orn/Lys/Arg decarboxylase, major domain AS54_1050 PF02525 Flavodoxin-like fold AS54_1051 PF02082 Transcriptional regulator AS54_1052 PF02734 DAK2 domain AS54_1054 PF18801 response regulator aspartate phosphatase H, N terminal AS54_1056 PF01966 HD domain AS54_1056 PF00672 HAMP domain AS54_106 PF02223 Thymidylate kinase AS54_1060 PF00395 S-layer homology domain AS54_1065 PF11181 Heat induced stress protein YflT AS54_1066 PF05532 CsbD-like AS54_1069 PF01740 STAS domain AS54_107 PF09115 DNA polymerase III, delta subunit, C terminal AS54_1070 PF13581 Histidine kinase-like ATPase domain AS54_1071 PF04542 Sigma-70 region 2 AS54_1071 PF04539 Sigma-70 region 3 AS54_1071 PF04545 Sigma-70, region 4 AS54_1073 PF07228 Stage II sporulation protein E (SpoIIE) AS54_1073 PF13426 PAS domain AS54_1074 PF03705 CheR methyltransferase, all-alpha domain AS54_1074 PF01739 CheR methyltransferase, SAM binding domain AS54_1075 PF01627 Hpt domain AS54_1075 PF00072 Response regulator receiver domain AS54_1075 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS54_1075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1075 PF00512 His Kinase A (phospho-acceptor) domain AS54_108 PF04468 PSP1 C-terminal conserved region AS54_1080 PF01906 Putative heavy-metal-binding AS54_1082 PF00107 Zinc-binding dehydrogenase AS54_1082 PF08240 Alcohol dehydrogenase GroES-like domain AS54_1085 PF11121 Protein of unknown function (DUF2639) AS54_1088 PF00149 Calcineurin-like phosphoesterase AS54_1089 PF13514 AAA domain AS54_109 PF06156 Initiation control protein YabA AS54_1090 PF01336 OB-fold nucleic acid binding domain AS54_1090 PF01966 HD domain AS54_1095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_1096 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_1097 PF18801 response regulator aspartate phosphatase H, N terminal AS54_1099 PF08386 TAP-like protein AS54_1099 PF00561 alpha/beta hydrolase fold AS54_11 PF00535 Glycosyl transferase family 2 AS54_110 PF05175 Methyltransferase small domain AS54_1103 PF04309 Glycerol-3-phosphate responsive antiterminator AS54_1104 PF00230 Major intrinsic protein AS54_1105 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS54_1105 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS54_1106 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AS54_1106 PF01266 FAD dependent oxidoreductase AS54_111 PF01541 GIY-YIG catalytic domain AS54_1111 PF04542 Sigma-70 region 2 AS54_1111 PF08281 Sigma-70, region 4 AS54_1116 PF07690 Major Facilitator Superfamily AS54_1117 PF07690 Major Facilitator Superfamily AS54_1119 PF13538 UvrD-like helicase C-terminal domain AS54_112 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS54_1123 PF01047 MarR family AS54_1124 PF12732 YtxH-like protein AS54_1125 PF01230 HIT domain AS54_1126 PF00005 ABC transporter AS54_1127 PF05975 Bacterial ABC transporter protein EcsB AS54_1128 PF12787 EcsC protein family AS54_113 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS54_113 PF18277 AbrB C-terminal domain AS54_114 PF09334 tRNA synthetases class I (M) AS54_114 PF01588 Putative tRNA binding domain AS54_114 PF08264 Anticodon-binding domain of tRNA AS54_1141 PF17934 Tetracyclin repressor-like, C-terminal domain AS54_1141 PF00440 Bacterial regulatory proteins, tetR family AS54_1143 PF03703 Bacterial PH domain AS54_1144 PF03703 Bacterial PH domain AS54_1148 PF01520 N-acetylmuramoyl-L-alanine amidase AS54_1148 PF00395 S-layer homology domain AS54_1149 PF00881 Nitroreductase family AS54_115 PF01026 TatD related DNase AS54_1155 PF03703 Bacterial PH domain AS54_1156 PF03703 Bacterial PH domain AS54_1157 PF03992 Antibiotic biosynthesis monooxygenase AS54_1158 PF00905 Penicillin binding protein transpeptidase domain AS54_1158 PF00912 Transglycosylase AS54_1159 PF01208 Uroporphyrinogen decarboxylase (URO-D) AS54_116 PF13662 Toprim domain AS54_116 PF13331 Domain of unknown function (DUF4093) AS54_1167 PF03965 Penicillinase repressor AS54_1169 PF00440 Bacterial regulatory proteins, tetR family AS54_1169 PF17932 Tetracyclin repressor-like, C-terminal domain AS54_117 PF00398 Ribosomal RNA adenine dimethylase AS54_1178 PF08279 HTH domain AS54_1178 PF13280 WYL domain AS54_1179 PF00356 Bacterial regulatory proteins, lacI family AS54_118 PF05582 YabG peptidase U57 AS54_1180 PF14149 YhfH-like protein AS54_1181 PF12706 Beta-lactamase superfamily domain AS54_1182 PF03099 Biotin/lipoate A/B protein ligase family AS54_1182 PF10437 Bacterial lipoate protein ligase C-terminus AS54_1184 PF13193 AMP-binding enzyme C-terminal domain AS54_1184 PF00501 AMP-binding enzyme AS54_1187 PF05593 RHS Repeat AS54_119 PF06257 Biofilm formation stimulator VEG AS54_1195 PF12146 Serine aminopeptidase, S33 AS54_1196 PF00149 Calcineurin-like phosphoesterase AS54_1198 PF01966 HD domain AS54_12 PF00440 Bacterial regulatory proteins, tetR family AS54_120 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS54_1200 PF04542 Sigma-70 region 2 AS54_1200 PF08281 Sigma-70, region 4 AS54_1201 PF06445 GyrI-like small molecule binding domain AS54_1201 PF12833 Helix-turn-helix domain AS54_1202 PF00512 His Kinase A (phospho-acceptor) domain AS54_1202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1203 PF00486 Transcriptional regulatory protein, C terminal AS54_1203 PF00072 Response regulator receiver domain AS54_1207 PF01435 Peptidase family M48 AS54_1207 PF16491 CAAX prenyl protease N-terminal, five membrane helices AS54_1208 PF00892 EamA-like transporter family AS54_1209 PF00395 S-layer homology domain AS54_1209 PF00150 Cellulase (glycosyl hydrolase family 5) AS54_1209 PF03424 Carbohydrate binding domain (family 17/28) AS54_121 PF00288 GHMP kinases N terminal domain AS54_121 PF08544 GHMP kinases C terminal AS54_1211 PF00395 S-layer homology domain AS54_1212 PF01274 Malate synthase AS54_1213 PF00463 Isocitrate lyase family AS54_1215 PF00313 'Cold-shock' DNA-binding domain AS54_122 PF00156 Phosphoribosyl transferase domain AS54_122 PF09182 Bacterial purine repressor, N-terminal AS54_1220 PF09335 SNARE associated Golgi protein AS54_1221 PF10502 Signal peptidase, peptidase S26 AS54_1222 PF12705 PD-(D/E)XK nuclease superfamily AS54_1222 PF13361 UvrD-like helicase C-terminal domain AS54_1223 PF13361 UvrD-like helicase C-terminal domain AS54_1223 PF12705 PD-(D/E)XK nuclease superfamily AS54_1223 PF00580 UvrD/REP helicase N-terminal domain AS54_1225 PF10676 Spore germination protein gerPA/gerPF AS54_1226 PF10970 Spore germination protein GerPE AS54_1228 PF10737 Spore germination protein GerPC AS54_1229 PF10803 Spore germination GerPB AS54_123 PF01042 Endoribonuclease L-PSP AS54_1230 PF10676 Spore germination protein gerPA/gerPF AS54_1231 PF09388 Spo0E like sporulation regulatory protein AS54_1232 PF01557 Fumarylacetoacetate (FAA) hydrolase family AS54_1234 PF00202 Aminotransferase class-III AS54_1235 PF07457 Protein of unknown function (DUF1516) AS54_1237 PF13537 Glutamine amidotransferase domain AS54_1237 PF00733 Asparagine synthase AS54_1239 PF06628 Catalase-related immune-responsive AS54_1239 PF00199 Catalase AS54_124 PF04026 SpoVG AS54_1240 PF00909 Ammonium Transporter Family AS54_1241 PF00128 Alpha amylase, catalytic domain AS54_1243 PF04461 Protein of unknown function (DUF520) AS54_1244 PF13509 S1 domain AS54_1244 PF17783 CvfB-like winged helix domain AS54_1246 PF00639 PPIC-type PPIASE domain AS54_1248 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_1248 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_1249 PF12758 Protein of unknown function (DUF3813) AS54_125 PF00132 Bacterial transferase hexapeptide (six repeats) AS54_125 PF00483 Nucleotidyl transferase AS54_1252 PF14168 YjzC-like protein AS54_1253 PF10431 C-terminal, D2-small domain, of ClpB protein AS54_1253 PF02861 Clp amino terminal domain, pathogenicity island component AS54_1253 PF17871 AAA lid domain AS54_1253 PF07724 AAA domain (Cdc48 subfamily) AS54_1253 PF00004 ATPase family associated with various cellular activities (AAA) AS54_1257 PF10815 ComZ AS54_1258 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS54_1258 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS54_1259 PF02801 Beta-ketoacyl synthase, C-terminal domain AS54_1259 PF00109 Beta-ketoacyl synthase, N-terminal domain AS54_126 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AS54_126 PF14572 Phosphoribosyl synthetase-associated domain AS54_1260 PF10026 Predicted Zn-dependent protease (DUF2268) AS54_1261 PF12227 Protein of unknown function (DUF3603) AS54_1262 PF00579 tRNA synthetases class I (W and Y) AS54_1264 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_1265 PF00528 Binding-protein-dependent transport system inner membrane component AS54_1266 PF12911 N-terminal TM domain of oligopeptide transport permease C AS54_1266 PF00528 Binding-protein-dependent transport system inner membrane component AS54_1267 PF00005 ABC transporter AS54_1267 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_1268 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_1268 PF00005 ABC transporter AS54_1269 PF01554 MatE AS54_127 PF01195 Peptidyl-tRNA hydrolase AS54_1270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_1272 PF03960 ArsC family AS54_1273 PF03741 Integral membrane protein TerC family AS54_1274 PF05389 Negative regulator of genetic competence (MecA) AS54_1275 PF13091 PLD-like domain AS54_1275 PF13396 Phospholipase_D-nuclease N-terminal AS54_1277 PF08439 Oligopeptidase F AS54_1277 PF01432 Peptidase family M3 AS54_1280 PF01152 Bacterial-like globin AS54_1281 PF01928 CYTH domain AS54_1283 PF04607 Region found in RelA / SpoT proteins AS54_1284 PF01513 ATP-NAD kinase AS54_1285 PF00849 RNA pseudouridylate synthase AS54_1287 PF00149 Calcineurin-like phosphoesterase AS54_1288 PF01098 Cell cycle protein AS54_1289 PF00535 Glycosyl transferase family 2 AS54_129 PF02559 CarD-like/TRCF domain AS54_129 PF00270 DEAD/DEAH box helicase AS54_129 PF17757 UvrB interaction domain AS54_129 PF00271 Helicase conserved C-terminal domain AS54_129 PF03461 TRCF domain AS54_1290 PF08241 Methyltransferase domain AS54_1291 PF05711 Macrocin-O-methyltransferase (TylF) AS54_1293 PF13181 Tetratricopeptide repeat AS54_1293 PF00535 Glycosyl transferase family 2 AS54_1297 PF00483 Nucleotidyl transferase AS54_1298 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AS54_1299 PF16363 GDP-mannose 4,6 dehydratase AS54_13 PF00873 AcrB/AcrD/AcrF family AS54_130 PF15714 Stage V sporulation protein T C-terminal, transcription factor AS54_130 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS54_1300 PF04321 RmlD substrate binding domain AS54_1304 PF07098 Protein of unknown function (DUF1360) AS54_1307 PF00580 UvrD/REP helicase N-terminal domain AS54_1307 PF13361 UvrD-like helicase C-terminal domain AS54_1308 PF13673 Acetyltransferase (GNAT) domain AS54_131 PF14667 Polysaccharide biosynthesis C-terminal domain AS54_131 PF01943 Polysaccharide biosynthesis protein AS54_1310 PF00756 Putative esterase AS54_1313 PF02368 Bacterial Ig-like domain (group 2) AS54_1314 PF00474 Sodium:solute symporter family AS54_1316 PF00591 Glycosyl transferase family, a/b domain AS54_1316 PF00117 Glutamine amidotransferase class-I AS54_1316 PF02885 Glycosyl transferase family, helical bundle domain AS54_1317 PF00591 Glycosyl transferase family, a/b domain AS54_1317 PF02885 Glycosyl transferase family, helical bundle domain AS54_1318 PF00218 Indole-3-glycerol phosphate synthase AS54_1319 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AS54_132 PF03819 MazG nucleotide pyrophosphohydrolase domain AS54_132 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS54_1320 PF00291 Pyridoxal-phosphate dependent enzyme AS54_1321 PF00290 Tryptophan synthase alpha chain AS54_1323 PF02652 L-lactate permease AS54_1324 PF10042 Uncharacterized conserved protein (DUF2278) AS54_1328 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS54_1328 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_133 PF01479 S4 domain AS54_1333 PF02817 e3 binding domain AS54_1333 PF00364 Biotin-requiring enzyme AS54_1333 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS54_1334 PF16870 2-oxoglutarate dehydrogenase C-terminal AS54_1334 PF02779 Transketolase, pyrimidine binding domain AS54_1334 PF00676 Dehydrogenase E1 component AS54_1335 PF01381 Helix-turn-helix AS54_134 PF07873 YabP family AS54_135 PF09578 Spore cortex protein YabQ (Spore_YabQ) AS54_1359 PF00202 Aminotransferase class-III AS54_1362 PF00005 ABC transporter AS54_1362 PF13732 Domain of unknown function (DUF4162) AS54_1366 PF13649 Methyltransferase domain AS54_1368 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_1368 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_137 PF00575 S1 RNA binding domain AS54_1370 PF12389 Camelysin metallo-endopeptidase AS54_1372 PF12389 Camelysin metallo-endopeptidase AS54_1373 PF08671 Anti-repressor SinI AS54_1373 PF01381 Helix-turn-helix AS54_1374 PF05547 Immune inhibitor A peptidase M6 AS54_1375 PF00171 Aldehyde dehydrogenase family AS54_1376 PF00005 ABC transporter AS54_1376 PF08402 TOBE domain AS54_1377 PF00528 Binding-protein-dependent transport system inner membrane component AS54_1378 PF00528 Binding-protein-dependent transport system inner membrane component AS54_1379 PF13416 Bacterial extracellular solute-binding protein AS54_1381 PF03176 MMPL family AS54_1383 PF01479 S4 domain AS54_1383 PF00849 RNA pseudouridylate synthase AS54_1385 PF00188 Cysteine-rich secretory protein family AS54_1386 PF02754 Cysteine-rich domain AS54_1386 PF13183 4Fe-4S dicluster domain AS54_1387 PF01565 FAD binding domain AS54_1387 PF02913 FAD linked oxidases, C-terminal domain AS54_1388 PF17853 GGDEF-like domain AS54_1388 PF13556 PucR C-terminal helix-turn-helix domain AS54_1388 PF05651 Putative sugar diacid recognition AS54_1390 PF00486 Transcriptional regulatory protein, C terminal AS54_1390 PF00072 Response regulator receiver domain AS54_1391 PF00512 His Kinase A (phospho-acceptor) domain AS54_1391 PF00989 PAS fold AS54_1391 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1391 PF18698 Histidine kinase sensor domain AS54_1391 PF00672 HAMP domain AS54_1392 PF00392 Bacterial regulatory proteins, gntR family AS54_1392 PF07729 FCD domain AS54_1393 PF02754 Cysteine-rich domain AS54_1394 PF02589 LUD domain AS54_1394 PF13183 4Fe-4S dicluster domain AS54_1394 PF11870 Domain of unknown function (DUF3390) AS54_1395 PF02589 LUD domain AS54_1396 PF01478 Type IV leader peptidase family AS54_1396 PF06750 Bacterial Peptidase A24 N-terminal domain AS54_1398 PF01226 Formate/nitrite transporter AS54_1399 PF03741 Integral membrane protein TerC family AS54_14 PF01641 SelR domain AS54_14 PF01625 Peptide methionine sulfoxide reductase AS54_140 PF07228 Stage II sporulation protein E (SpoIIE) AS54_1400 PF02386 Cation transport protein AS54_1401 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS54_1402 PF01575 MaoC like domain AS54_1407 PF00561 alpha/beta hydrolase fold AS54_1409 PF02386 Cation transport protein AS54_141 PF11734 TilS substrate C-terminal domain AS54_141 PF09179 TilS substrate binding domain AS54_141 PF01171 PP-loop family AS54_1413 PF00005 ABC transporter AS54_1413 PF08402 TOBE domain AS54_1414 PF00528 Binding-protein-dependent transport system inner membrane component AS54_1415 PF13419 Haloacid dehalogenase-like hydrolase AS54_1416 PF00266 Aminotransferase class-V AS54_1418 PF08220 DeoR-like helix-turn-helix domain AS54_1418 PF00455 DeoR C terminal sensor domain AS54_1420 PF01520 N-acetylmuramoyl-L-alanine amidase AS54_1420 PF00395 S-layer homology domain AS54_1421 PF00596 Class II Aldolase and Adducin N-terminal domain AS54_1423 PF04748 Divergent polysaccharide deacetylase AS54_1424 PF09388 Spo0E like sporulation regulatory protein AS54_1425 PF00512 His Kinase A (phospho-acceptor) domain AS54_1425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1425 PF02743 Cache domain AS54_1426 PF01047 MarR family AS54_1428 PF12867 DinB superfamily AS54_143 PF00004 ATPase family associated with various cellular activities (AAA) AS54_143 PF01434 Peptidase family M41 AS54_143 PF06480 FtsH Extracellular AS54_143 PF17862 AAA+ lid domain AS54_1430 PF00989 PAS fold AS54_1430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1430 PF13188 PAS domain AS54_1430 PF00512 His Kinase A (phospho-acceptor) domain AS54_1430 PF13426 PAS domain AS54_1431 PF06508 Queuosine biosynthesis protein QueC AS54_1432 PF01242 6-pyruvoyl tetrahydropterin synthase AS54_1433 PF04055 Radical SAM superfamily AS54_1434 PF14489 QueF-like protein AS54_1435 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AS54_144 PF03309 Type III pantothenate kinase AS54_1441 PF07972 NrdI Flavodoxin like AS54_1442 PF02867 Ribonucleotide reductase, barrel domain AS54_1442 PF08343 Ribonucleotide reductase N-terminal AS54_1442 PF00317 Ribonucleotide reductase, all-alpha domain AS54_1443 PF01844 HNH endonuclease AS54_1444 PF02867 Ribonucleotide reductase, barrel domain AS54_1444 PF08343 Ribonucleotide reductase N-terminal AS54_1444 PF14528 LAGLIDADG-like domain AS54_1444 PF00317 Ribonucleotide reductase, all-alpha domain AS54_1445 PF00268 Ribonucleotide reductase, small chain AS54_1446 PF00392 Bacterial regulatory proteins, gntR family AS54_1447 PF00005 ABC transporter AS54_1449 PF00005 ABC transporter AS54_145 PF01430 Hsp33 protein AS54_1453 PF01037 Lrp/AsnC ligand binding domain AS54_1455 PF00857 Isochorismatase family AS54_1457 PF17676 LD-carboxypeptidase C-terminal domain AS54_1457 PF02016 LD-carboxypeptidase N-terminal domain AS54_1458 PF03060 Nitronate monooxygenase AS54_1459 PF04914 DltD protein AS54_146 PF00291 Pyridoxal-phosphate dependent enzyme AS54_1460 PF00550 Phosphopantetheine attachment site AS54_1461 PF03062 MBOAT, membrane-bound O-acyltransferase family AS54_1462 PF13193 AMP-binding enzyme C-terminal domain AS54_1462 PF00501 AMP-binding enzyme AS54_1464 PF01546 Peptidase family M20/M25/M40 AS54_1464 PF07687 Peptidase dimerisation domain AS54_1466 PF00258 Flavodoxin AS54_147 PF04715 Anthranilate synthase component I, N terminal region AS54_147 PF00425 chorismate binding enzyme AS54_1473 PF01554 MatE AS54_1474 PF02673 Bacitracin resistance protein BacA AS54_1477 PF01047 MarR family AS54_1479 PF00375 Sodium:dicarboxylate symporter family AS54_148 PF00117 Glutamine amidotransferase class-I AS54_1480 PF02386 Cation transport protein AS54_1482 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AS54_1484 PF03698 Uncharacterised protein family (UPF0180) AS54_1487 PF01063 Amino-transferase class IV AS54_1488 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_1488 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_1488 PF00205 Thiamine pyrophosphate enzyme, central domain AS54_1489 PF01842 ACT domain AS54_1489 PF10369 Small subunit of acetolactate synthase AS54_149 PF01063 Amino-transferase class IV AS54_1490 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AS54_1490 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AS54_1491 PF08502 LeuA allosteric (dimerisation) domain AS54_1491 PF00682 HMGL-like AS54_1492 PF00180 Isocitrate/isopropylmalate dehydrogenase AS54_1493 PF00330 Aconitase family (aconitate hydratase) AS54_1494 PF00694 Aconitase C-terminal domain AS54_1495 PF13393 Histidyl-tRNA synthetase AS54_1496 PF01634 ATP phosphoribosyltransferase AS54_1497 PF00815 Histidinol dehydrogenase AS54_1498 PF00475 Imidazoleglycerol-phosphate dehydratase AS54_1499 PF00117 Glutamine amidotransferase class-I AS54_15 PF01594 AI-2E family transporter AS54_150 PF00809 Pterin binding enzyme AS54_1500 PF00977 Histidine biosynthesis protein AS54_1501 PF00977 Histidine biosynthesis protein AS54_1502 PF01502 Phosphoribosyl-AMP cyclohydrolase AS54_1503 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AS54_1504 PF02811 PHP domain AS54_1506 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS54_1506 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS54_1507 PF01066 CDP-alcohol phosphatidyltransferase AS54_1508 PF00884 Sulfatase AS54_151 PF02152 Dihydroneopterin aldolase AS54_1510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AS54_1510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AS54_1512 PF01507 Phosphoadenosine phosphosulfate reductase family AS54_1513 PF01747 ATP-sulfurylase AS54_1513 PF14306 PUA-like domain AS54_1515 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AS54_1515 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS54_1517 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS54_1518 PF01903 CbiX AS54_152 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AS54_1520 PF00209 Sodium:neurotransmitter symporter family AS54_1521 PF00665 Integrase core domain AS54_1521 PF13333 Integrase core domain AS54_1521 PF13276 HTH-like domain AS54_1524 PF00375 Sodium:dicarboxylate symporter family AS54_1526 PF03553 Na+/H+ antiporter family AS54_1529 PF09922 Cell wall-active antibiotics response 4TMS YvqF AS54_153 PF01381 Helix-turn-helix AS54_1530 PF07730 Histidine kinase AS54_1530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1530 PF00672 HAMP domain AS54_1531 PF00196 Bacterial regulatory proteins, luxR family AS54_1531 PF00072 Response regulator receiver domain AS54_1533 PF05525 Branched-chain amino acid transport protein AS54_1535 PF08241 Methyltransferase domain AS54_154 PF01207 Dihydrouridine synthase (Dus) AS54_1540 PF00970 Oxidoreductase FAD-binding domain AS54_1540 PF00175 Oxidoreductase NAD-binding domain AS54_1540 PF00042 Globin AS54_1543 PF01925 Sulfite exporter TauE/SafE AS54_1544 PF01384 Phosphate transporter family AS54_1545 PF01865 Protein of unknown function DUF47 AS54_1546 PF00912 Transglycosylase AS54_1546 PF00905 Penicillin binding protein transpeptidase domain AS54_1549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1549 PF00989 PAS fold AS54_1549 PF00512 His Kinase A (phospho-acceptor) domain AS54_155 PF01336 OB-fold nucleic acid binding domain AS54_155 PF00152 tRNA synthetases class II (D, K and N) AS54_1550 PF01904 Protein of unknown function DUF72 AS54_1552 PF00589 Phage integrase family AS54_1553 PF16736 Single Cache-like AS54_1553 PF00989 PAS fold AS54_1553 PF00512 His Kinase A (phospho-acceptor) domain AS54_1553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1554 PF01048 Phosphorylase superfamily AS54_1557 PF03706 Lysylphosphatidylglycerol synthase TM region AS54_1557 PF09924 Uncharacterised conserved protein (DUF2156) AS54_1560 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS54_1560 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS54_1561 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_1561 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_1562 PF07670 Nucleoside recognition AS54_1563 PF07670 Nucleoside recognition AS54_1564 PF01479 S4 domain AS54_1564 PF00849 RNA pseudouridylate synthase AS54_1565 PF00578 AhpC/TSA family AS54_1566 PF05140 ResB-like family AS54_1567 PF01578 Cytochrome C assembly protein AS54_1568 PF00486 Transcriptional regulatory protein, C terminal AS54_1568 PF00072 Response regulator receiver domain AS54_1569 PF00672 HAMP domain AS54_1569 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1569 PF18698 Histidine kinase sensor domain AS54_1569 PF00989 PAS fold AS54_1569 PF00512 His Kinase A (phospho-acceptor) domain AS54_1570 PF01923 Cobalamin adenosyltransferase AS54_1571 PF01551 Peptidase family M23 AS54_1573 PF12822 ECF transporter, substrate-specific component AS54_1576 PF00270 DEAD/DEAH box helicase AS54_1576 PF00271 Helicase conserved C-terminal domain AS54_1577 PF02517 CPBP intramembrane metalloprotease AS54_1579 PF00149 Calcineurin-like phosphoesterase AS54_1580 PF13411 MerR HTH family regulatory protein AS54_1580 PF02607 B12 binding domain AS54_1580 PF02310 B12 binding domain AS54_1581 PF05389 Negative regulator of genetic competence (MecA) AS54_1582 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS54_1582 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AS54_1587 PF17763 Glutaminase/Asparaginase C-terminal domain AS54_1587 PF00710 Asparaginase, N-terminal AS54_1589 PF02224 Cytidylate kinase AS54_1590 PF00575 S1 RNA binding domain AS54_1591 PF01070 FMN-dependent dehydrogenase AS54_1592 PF14140 YpzI-like protein AS54_1594 PF14045 YIEGIA protein AS54_1596 PF01926 50S ribosome-binding GTPase AS54_1596 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AS54_1597 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AS54_1597 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AS54_1599 PF10966 Protein of unknown function (DUF2768) AS54_16 PF04172 LrgB-like family AS54_1601 PF09547 Stage IV sporulation protein A (spore_IV_A) AS54_1602 PF00216 Bacterial DNA-binding protein AS54_1603 PF01227 GTP cyclohydrolase I AS54_1604 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AS54_1605 PF01209 ubiE/COQ5 methyltransferase family AS54_1606 PF00348 Polyprenyl synthetase AS54_1607 PF00334 Nucleoside diphosphate kinase AS54_1608 PF01264 Chorismate synthase AS54_1609 PF01761 3-dehydroquinate synthase AS54_1610 PF00155 Aminotransferase class I and II AS54_1612 PF08858 IDEAL domain AS54_1612 PF08864 UPF0302 domain AS54_1613 PF10673 Protein of unknown function (DUF2487) AS54_1614 PF00355 Rieske [2Fe-2S] domain AS54_1615 PF00033 Cytochrome b/b6/petB AS54_1616 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS54_1616 PF00032 Cytochrome b(C-terminal)/b6/petD AS54_1617 PF07187 Protein of unknown function (DUF1405) AS54_1619 PF09577 Sporulation protein YpjB (SpoYpjB) AS54_1620 PF04298 Putative neutral zinc metallopeptidase AS54_1622 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_1622 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_1623 PF03819 MazG nucleotide pyrophosphohydrolase domain AS54_1624 PF01113 Dihydrodipicolinate reductase, N-terminus AS54_1624 PF05173 Dihydrodipicolinate reductase, C-terminus AS54_1625 PF02142 MGS-like domain AS54_1626 PF02585 GlcNAc-PI de-N-acetylase AS54_1627 PF00534 Glycosyl transferases group 1 AS54_1627 PF13439 Glycosyltransferase Family 4 AS54_1628 PF13735 tRNA nucleotidyltransferase domain 2 putative AS54_1628 PF01743 Poly A polymerase head domain AS54_1628 PF12627 Probable RNA and SrmB- binding site of polymerase A AS54_1629 PF08279 HTH domain AS54_1629 PF03099 Biotin/lipoate A/B protein ligase family AS54_1629 PF02237 Biotin protein ligase C terminal domain AS54_1631 PF02548 Ketopantoate hydroxymethyltransferase AS54_1632 PF02569 Pantoate-beta-alanine ligase AS54_1633 PF02261 Aspartate decarboxylase AS54_1634 PF04851 Type III restriction enzyme, res subunit AS54_1634 PF00929 Exonuclease AS54_1634 PF13307 Helicase C-terminal domain AS54_1635 PF14084 Protein of unknown function (DUF4264) AS54_1637 PF00155 Aminotransferase class I and II AS54_1638 PF07261 Replication initiation and membrane attachment AS54_1639 PF00730 HhH-GPD superfamily base excision DNA repair protein AS54_1639 PF00633 Helix-hairpin-helix motif AS54_1639 PF10576 Iron-sulfur binding domain of endonuclease III AS54_1641 PF00905 Penicillin binding protein transpeptidase domain AS54_1641 PF00912 Transglycosylase AS54_1642 PF03838 Recombination protein U AS54_1643 PF10720 Protein of unknown function (DUF2515) AS54_1650 PF06908 YspA SLOG family AS54_1651 PF05103 DivIVA protein AS54_1652 PF02926 THUMP domain AS54_1652 PF01170 Putative RNA methylase family UPF0020 AS54_1654 PF13307 Helicase C-terminal domain AS54_1655 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AS54_1657 PF01636 Phosphotransferase enzyme family AS54_1658 PF00557 Metallopeptidase family M24 AS54_1659 PF00156 Phosphoribosyl transferase domain AS54_1660 PF00860 Permease family AS54_1661 PF04235 Protein of unknown function (DUF418) AS54_1663 PF00350 Dynamin family AS54_1665 PF00583 Acetyltransferase (GNAT) family AS54_1666 PF10752 Protein of unknown function (DUF2533) AS54_1667 PF00581 Rhodanese-like domain AS54_1671 PF03738 Glutathionylspermidine synthase preATP-grasp AS54_1673 PF00689 Cation transporting ATPase, C-terminus AS54_1673 PF00690 Cation transporter/ATPase, N-terminus AS54_1674 PF01367 5'-3' exonuclease, C-terminal SAM fold AS54_1674 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AS54_1677 PF18014 Acetyltransferase (GNAT) domain AS54_1677 PF13673 Acetyltransferase (GNAT) domain AS54_1681 PF13456 Reverse transcriptase-like AS54_1682 PF01263 Aldose 1-epimerase AS54_1687 PF00313 'Cold-shock' DNA-binding domain AS54_1688 PF08892 YqcI/YcgG family AS54_1689 PF01810 LysE type translocator AS54_1692 PF04341 Protein of unknown function, DUF485 AS54_1693 PF00474 Sodium:solute symporter family AS54_1694 PF00202 Aminotransferase class-III AS54_1696 PF00999 Sodium/hydrogen exchanger family AS54_1697 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS54_1697 PF00753 Metallo-beta-lactamase superfamily AS54_1697 PF17770 Ribonuclease J C-terminal domain AS54_1698 PF06445 GyrI-like small molecule binding domain AS54_1698 PF13411 MerR HTH family regulatory protein AS54_17 PF03788 LrgA family AS54_1700 PF04239 Protein of unknown function (DUF421) AS54_1701 PF02698 DUF218 domain AS54_1703 PF00881 Nitroreductase family AS54_1712 PF17209 Hfq protein AS54_1714 PF01618 MotA/TolQ/ExbB proton channel family AS54_1715 PF00691 OmpA family AS54_1715 PF13677 Membrane MotB of proton-channel complex MotA/MotB AS54_1716 PF00072 Response regulator receiver domain AS54_1717 PF02895 Signal transducing histidine kinase, homodimeric domain AS54_1717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1717 PF01584 CheW-like domain AS54_1717 PF01627 Hpt domain AS54_1717 PF07194 P2 response regulator binding domain AS54_1718 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS54_1718 PF04509 CheC-like family AS54_1721 PF03705 CheR methyltransferase, all-alpha domain AS54_1721 PF01739 CheR methyltransferase, SAM binding domain AS54_1725 PF00460 Flagella basal body rod protein AS54_1725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS54_1726 PF00700 Bacterial flagellin C-terminal helical region AS54_1726 PF00669 Bacterial flagellin N-terminal helical region AS54_1727 PF02465 Flagellar hook-associated protein 2 N-terminus AS54_1727 PF07195 Flagellar hook-associated protein 2 C-terminus AS54_1727 PF07196 Flagellin hook IN motif AS54_173 PF05848 CtsR N-terminal HTH domain AS54_173 PF17727 CtsR C-terminal dimerization domain AS54_1730 PF00460 Flagella basal body rod protein AS54_1731 PF00460 Flagella basal body rod protein AS54_1731 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS54_1732 PF02049 Flagellar hook-basal body complex protein FliE AS54_1733 PF08345 Flagellar M-ring protein C-terminal AS54_1733 PF01514 Secretory protein of YscJ/FliF family AS54_1734 PF14841 FliG middle domain AS54_1734 PF14842 FliG N-terminal domain AS54_1734 PF01706 FliG C-terminal domain AS54_1736 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS54_1736 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS54_1736 PF18269 T3SS EscN ATPase C-terminal domain AS54_174 PF02151 UvrB/uvrC motif AS54_1740 PF00460 Flagella basal body rod protein AS54_1740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS54_1740 PF07559 Flagellar basal body protein FlaE AS54_1743 PF00072 Response regulator receiver domain AS54_1743 PF01584 CheW-like domain AS54_1744 PF12181 DNA binding domain of the motility gene repressor (MogR) AS54_1745 PF00700 Bacterial flagellin C-terminal helical region AS54_1745 PF00669 Bacterial flagellin N-terminal helical region AS54_1746 PF00700 Bacterial flagellin C-terminal helical region AS54_1746 PF00669 Bacterial flagellin N-terminal helical region AS54_1747 PF01464 Transglycosylase SLT domain AS54_1749 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS54_1749 PF02154 Flagellar motor switch protein FliM AS54_175 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AS54_1750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS54_1750 PF04509 CheC-like family AS54_1752 PF00813 FliP family AS54_1753 PF01313 Bacterial export proteins, family 3 AS54_1755 PF01312 FlhB HrpN YscU SpaS Family AS54_1756 PF00771 FHIPEP family AS54_1757 PF00448 SRP54-type protein, GTPase domain AS54_1758 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS54_1758 PF00460 Flagella basal body rod protein AS54_1759 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS54_1759 PF01411 tRNA synthetases class II (A) AS54_1759 PF02272 DHHA1 domain AS54_176 PF17871 AAA lid domain AS54_176 PF10431 C-terminal, D2-small domain, of ClpB protein AS54_176 PF07724 AAA domain (Cdc48 subfamily) AS54_176 PF00004 ATPase family associated with various cellular activities (AAA) AS54_176 PF02861 Clp amino terminal domain, pathogenicity island component AS54_1764 PF08360 QacR-like protein, C-terminal region AS54_1764 PF00440 Bacterial regulatory proteins, tetR family AS54_1765 PF17329 Family of unknown function (DUF5367) AS54_1768 PF03992 Antibiotic biosynthesis monooxygenase AS54_1769 PF08141 Small acid-soluble spore protein H family AS54_177 PF18073 Rubredoxin metal binding domain AS54_1774 PF08402 TOBE domain AS54_1774 PF00005 ABC transporter AS54_1776 PF00528 Binding-protein-dependent transport system inner membrane component AS54_1777 PF12706 Beta-lactamase superfamily domain AS54_1777 PF00753 Metallo-beta-lactamase superfamily AS54_1779 PF10787 Uncharacterised protein from bacillus cereus group AS54_178 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS54_178 PF10635 DisA bacterial checkpoint controller linker region AS54_1782 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_1782 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_1784 PF00300 Histidine phosphatase superfamily (branch 1) AS54_1786 PF00561 alpha/beta hydrolase fold AS54_1788 PF01047 MarR family AS54_1790 PF13537 Glutamine amidotransferase domain AS54_1790 PF00733 Asparagine synthase AS54_1794 PF16916 Dimerisation domain of Zinc Transporter AS54_1794 PF01545 Cation efflux family AS54_1796 PF00392 Bacterial regulatory proteins, gntR family AS54_1796 PF07729 FCD domain AS54_1797 PF00892 EamA-like transporter family AS54_1798 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS54_1798 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS54_1799 PF03773 Predicted permease AS54_18 PF04397 LytTr DNA-binding domain AS54_18 PF00072 Response regulator receiver domain AS54_180 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AS54_1802 PF03553 Na+/H+ antiporter family AS54_1803 PF10415 Fumarase C C-terminus AS54_1803 PF00206 Lyase AS54_1806 PF01554 MatE AS54_1807 PF03575 Peptidase family S51 AS54_181 PF02542 YgbB family AS54_1811 PF02683 Cytochrome C biogenesis protein transmembrane region AS54_1812 PF00578 AhpC/TSA family AS54_1816 PF00291 Pyridoxal-phosphate dependent enzyme AS54_1817 PF04286 Protein of unknown function (DUF445) AS54_182 PF00749 tRNA synthetases class I (E and Q), catalytic domain AS54_1822 PF00196 Bacterial regulatory proteins, luxR family AS54_1822 PF00072 Response regulator receiver domain AS54_1823 PF07730 Histidine kinase AS54_1823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1823 PF13185 GAF domain AS54_1823 PF13492 GAF domain AS54_1824 PF00005 ABC transporter AS54_1827 PF13091 PLD-like domain AS54_1828 PF00696 Amino acid kinase family AS54_1829 PF00375 Sodium:dicarboxylate symporter family AS54_183 PF00132 Bacterial transferase hexapeptide (six repeats) AS54_183 PF06426 Serine acetyltransferase, N-terminal AS54_1830 PF10415 Fumarase C C-terminus AS54_1830 PF00206 Lyase AS54_1831 PF03949 Malic enzyme, NAD binding domain AS54_1831 PF00390 Malic enzyme, N-terminal domain AS54_1832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1833 PF08664 YcbB domain AS54_1833 PF00072 Response regulator receiver domain AS54_1834 PF04434 SWIM zinc finger AS54_1834 PF00176 SNF2 family N-terminal domain AS54_1834 PF00271 Helicase conserved C-terminal domain AS54_1836 PF03590 Aspartate-ammonia ligase AS54_184 PF09190 DALR domain AS54_184 PF01406 tRNA synthetases class I (C) catalytic domain AS54_1840 PF00696 Amino acid kinase family AS54_1840 PF13840 ACT domain AS54_1842 PF13761 Domain of unknown function (DUF4166) AS54_1843 PF14158 YndJ-like protein AS54_1844 PF00293 NUDIX domain AS54_1845 PF00395 S-layer homology domain AS54_1845 PF02368 Bacterial Ig-like domain (group 2) AS54_1847 PF07690 Major Facilitator Superfamily AS54_185 PF00636 Ribonuclease III domain AS54_1850 PF02554 Carbon starvation protein CstA AS54_1851 PF03976 Polyphosphate kinase 2 (PPK2) AS54_1852 PF03551 Transcriptional regulator PadR-like family AS54_1852 PF10400 Virulence activator alpha C-term AS54_1853 PF07690 Major Facilitator Superfamily AS54_1854 PF07690 Major Facilitator Superfamily AS54_1855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS54_1855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS54_1856 PF13167 GTP-binding GTPase N-terminal AS54_1856 PF16360 GTP-binding GTPase Middle Region AS54_1856 PF01926 50S ribosome-binding GTPase AS54_1857 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_1858 PF07690 Major Facilitator Superfamily AS54_1859 PF00291 Pyridoxal-phosphate dependent enzyme AS54_186 PF00588 SpoU rRNA Methylase family AS54_186 PF08032 RNA 2'-O ribose methyltransferase substrate binding AS54_1862 PF01943 Polysaccharide biosynthesis protein AS54_1862 PF14667 Polysaccharide biosynthesis C-terminal domain AS54_1863 PF00209 Sodium:neurotransmitter symporter family AS54_1864 PF01522 Polysaccharide deacetylase AS54_1864 PF00457 Glycosyl hydrolases family 11 AS54_1864 PF03422 Carbohydrate binding module (family 6) AS54_1866 PF04239 Protein of unknown function (DUF421) AS54_1869 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS54_1869 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS54_187 PF05991 YacP-like NYN domain AS54_1873 PF01625 Peptide methionine sulfoxide reductase AS54_1875 PF01063 Amino-transferase class IV AS54_1876 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_1876 PF00205 Thiamine pyrophosphate enzyme, central domain AS54_1876 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_1878 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AS54_1878 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AS54_1879 PF00920 Dehydratase family AS54_188 PF08281 Sigma-70, region 4 AS54_188 PF04542 Sigma-70 region 2 AS54_1880 PF00291 Pyridoxal-phosphate dependent enzyme AS54_1880 PF00585 C-terminal regulatory domain of Threonine dehydratase AS54_1882 PF09587 Bacterial capsule synthesis protein PGA_cap AS54_1885 PF07690 Major Facilitator Superfamily AS54_1886 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AS54_1889 PF00144 Beta-lactamase AS54_189 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AS54_1890 PF04397 LytTr DNA-binding domain AS54_1890 PF00072 Response regulator receiver domain AS54_1891 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AS54_1891 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AS54_1894 PF01979 Amidohydrolase family AS54_1895 PF14436 Bacterial EndoU nuclease AS54_1895 PF04740 LXG domain of WXG superfamily AS54_1898 PF00589 Phage integrase family AS54_1898 PF14659 Phage integrase, N-terminal SAM-like domain AS54_19 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_19 PF07694 5TMR of 5TMR-LYT AS54_19 PF13492 GAF domain AS54_19 PF06580 Histidine kinase AS54_190 PF02357 Transcription termination factor nusG AS54_190 PF00467 KOW motif AS54_1900 PF01381 Helix-turn-helix AS54_191 PF00298 Ribosomal protein L11, RNA binding domain AS54_191 PF03946 Ribosomal protein L11, N-terminal domain AS54_1912 PF08299 Bacterial dnaA protein helix-turn-helix AS54_1912 PF00308 Bacterial dnaA protein AS54_192 PF00687 Ribosomal protein L1p/L10e family AS54_1924 PF00145 C-5 cytosine-specific DNA methylase AS54_193 PF00466 Ribosomal protein L10 AS54_1931 PF00589 Phage integrase family AS54_194 PF00542 Ribosomal protein L7/L12 C-terminal domain AS54_194 PF16320 Ribosomal protein L7/L12 dimerisation domain AS54_195 PF05175 Methyltransferase small domain AS54_196 PF04561 RNA polymerase Rpb2, domain 2 AS54_196 PF04565 RNA polymerase Rpb2, domain 3 AS54_196 PF04560 RNA polymerase Rpb2, domain 7 AS54_196 PF10385 RNA polymerase beta subunit external 1 domain AS54_196 PF00562 RNA polymerase Rpb2, domain 6 AS54_196 PF04563 RNA polymerase beta subunit AS54_1961 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_1965 PF13186 Iron-sulfur cluster-binding domain AS54_1965 PF04055 Radical SAM superfamily AS54_1966 PF13302 Acetyltransferase (GNAT) domain AS54_1967 PF00072 Response regulator receiver domain AS54_1967 PF00486 Transcriptional regulatory protein, C terminal AS54_1968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_1968 PF00512 His Kinase A (phospho-acceptor) domain AS54_197 PF04983 RNA polymerase Rpb1, domain 3 AS54_197 PF04998 RNA polymerase Rpb1, domain 5 AS54_197 PF04997 RNA polymerase Rpb1, domain 1 AS54_197 PF05000 RNA polymerase Rpb1, domain 4 AS54_197 PF00623 RNA polymerase Rpb1, domain 2 AS54_1971 PF01566 Natural resistance-associated macrophage protein AS54_1974 PF08546 Ketopantoate reductase PanE/ApbA C terminal AS54_1974 PF02558 Ketopantoate reductase PanE/ApbA AS54_1976 PF13520 Amino acid permease AS54_1978 PF05791 Bacillus haemolytic enterotoxin (HBL) AS54_1979 PF05791 Bacillus haemolytic enterotoxin (HBL) AS54_198 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AS54_1981 PF04198 Putative sugar-binding domain AS54_1982 PF01791 DeoC/LacD family aldolase AS54_1983 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_1983 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_1984 PF00591 Glycosyl transferase family, a/b domain AS54_1984 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AS54_1984 PF02885 Glycosyl transferase family, helical bundle domain AS54_1985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS54_1986 PF05979 Bacterial protein of unknown function (DUF896) AS54_1989 PF05195 Aminopeptidase P, N-terminal domain AS54_1989 PF00557 Metallopeptidase family M24 AS54_199 PF00164 Ribosomal protein S12/S23 AS54_1990 PF00394 Multicopper oxidase AS54_1990 PF07732 Multicopper oxidase AS54_1990 PF07731 Multicopper oxidase AS54_1991 PF01551 Peptidase family M23 AS54_1996 PF02525 Flavodoxin-like fold AS54_1997 PF05525 Branched-chain amino acid transport protein AS54_1999 PF04234 CopC domain AS54_1999 PF13115 YtkA-like AS54_1999 PF05425 Copper resistance protein D AS54_2 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_20 PF07690 Major Facilitator Superfamily AS54_200 PF00177 Ribosomal protein S7p/S5e AS54_2000 PF07987 Domain of unkown function (DUF1775) AS54_2002 PF00892 EamA-like transporter family AS54_2003 PF03466 LysR substrate binding domain AS54_2003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_2004 PF02082 Transcriptional regulator AS54_2005 PF01323 DSBA-like thioredoxin domain AS54_2006 PF00881 Nitroreductase family AS54_2008 PF01425 Amidase AS54_2009 PF01594 AI-2E family transporter AS54_201 PF00679 Elongation factor G C-terminus AS54_201 PF14492 Elongation Factor G, domain II AS54_201 PF03764 Elongation factor G, domain IV AS54_201 PF00009 Elongation factor Tu GTP binding domain AS54_201 PF03144 Elongation factor Tu domain 2 AS54_2010 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS54_2010 PF00056 lactate/malate dehydrogenase, NAD binding domain AS54_2011 PF01593 Flavin containing amine oxidoreductase AS54_2012 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS54_2012 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS54_2015 PF13193 AMP-binding enzyme C-terminal domain AS54_2015 PF00501 AMP-binding enzyme AS54_2016 PF01575 MaoC like domain AS54_2017 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS54_2017 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS54_2019 PF12399 Branched-chain amino acid ATP-binding cassette transporter AS54_2019 PF00005 ABC transporter AS54_202 PF00009 Elongation factor Tu GTP binding domain AS54_202 PF03144 Elongation factor Tu domain 2 AS54_202 PF03143 Elongation factor Tu C-terminal domain AS54_2020 PF00005 ABC transporter AS54_2021 PF02653 Branched-chain amino acid transport system / permease component AS54_2023 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_2023 PF03466 LysR substrate binding domain AS54_2027 PF01047 MarR family AS54_2029 PF01654 Cytochrome bd terminal oxidase subunit I AS54_203 PF00338 Ribosomal protein S10p/S20e AS54_2030 PF02322 Cytochrome bd terminal oxidase subunit II AS54_2031 PF00664 ABC transporter transmembrane region AS54_2031 PF00005 ABC transporter AS54_2032 PF00664 ABC transporter transmembrane region AS54_2032 PF00005 ABC transporter AS54_2035 PF02016 LD-carboxypeptidase N-terminal domain AS54_2035 PF17676 LD-carboxypeptidase C-terminal domain AS54_2036 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_2036 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_2038 PF01476 LysM domain AS54_2038 PF00877 NlpC/P60 family AS54_204 PF00297 Ribosomal protein L3 AS54_2040 PF00664 ABC transporter transmembrane region AS54_2040 PF00005 ABC transporter AS54_2041 PF00072 Response regulator receiver domain AS54_2041 PF00486 Transcriptional regulatory protein, C terminal AS54_2042 PF00512 His Kinase A (phospho-acceptor) domain AS54_2042 PF00989 PAS fold AS54_2042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_2042 PF16736 Single Cache-like AS54_2043 PF00106 short chain dehydrogenase AS54_2045 PF04439 Streptomycin adenylyltransferase AS54_2046 PF01522 Polysaccharide deacetylase AS54_2046 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AS54_205 PF00573 Ribosomal protein L4/L1 family AS54_2050 PF03447 Homoserine dehydrogenase, NAD binding domain AS54_2050 PF01842 ACT domain AS54_2050 PF00742 Homoserine dehydrogenase AS54_2051 PF00291 Pyridoxal-phosphate dependent enzyme AS54_2052 PF00288 GHMP kinases N terminal domain AS54_2052 PF08544 GHMP kinases C terminal AS54_2055 PF03816 Cell envelope-related transcriptional attenuator domain AS54_2057 PF00072 Response regulator receiver domain AS54_2057 PF00486 Transcriptional regulatory protein, C terminal AS54_2058 PF00989 PAS fold AS54_2058 PF00512 His Kinase A (phospho-acceptor) domain AS54_2058 PF16736 Single Cache-like AS54_2058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_2059 PF01522 Polysaccharide deacetylase AS54_206 PF00276 Ribosomal protein L23 AS54_2061 PF02308 MgtC family AS54_2062 PF00583 Acetyltransferase (GNAT) family AS54_2063 PF06276 Ferric iron reductase FhuF-like transporter AS54_2063 PF04183 IucA / IucC family AS54_2064 PF06276 Ferric iron reductase FhuF-like transporter AS54_2064 PF04183 IucA / IucC family AS54_2065 PF00501 AMP-binding enzyme AS54_2065 PF13193 AMP-binding enzyme C-terminal domain AS54_2068 PF01261 Xylose isomerase-like TIM barrel AS54_2069 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS54_207 PF03947 Ribosomal Proteins L2, C-terminal domain AS54_207 PF00181 Ribosomal Proteins L2, RNA binding domain AS54_2070 PF07690 Major Facilitator Superfamily AS54_2071 PF01810 LysE type translocator AS54_2072 PF00392 Bacterial regulatory proteins, gntR family AS54_2072 PF00155 Aminotransferase class I and II AS54_2074 PF01734 Patatin-like phospholipase AS54_2079 PF00293 NUDIX domain AS54_2079 PF13344 Haloacid dehalogenase-like hydrolase AS54_208 PF00203 Ribosomal protein S19 AS54_2080 PF02540 NAD synthase AS54_209 PF00237 Ribosomal protein L22p/L17e AS54_2094 PF04860 Phage portal protein AS54_21 PF02028 BCCT, betaine/carnitine/choline family transporter AS54_210 PF00189 Ribosomal protein S3, C-terminal domain AS54_210 PF07650 KH domain AS54_2100 PF02687 FtsX-like permease family AS54_2101 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS54_2101 PF18277 AbrB C-terminal domain AS54_2102 PF00082 Subtilase family AS54_2103 PF01022 Bacterial regulatory protein, arsR family AS54_2104 PF00248 Aldo/keto reductase family AS54_2105 PF07690 Major Facilitator Superfamily AS54_2109 PF03193 RsgA GTPase AS54_211 PF00252 Ribosomal protein L16p/L10e AS54_2110 PF02743 Cache domain AS54_2110 PF00672 HAMP domain AS54_2110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_2114 PF00210 Ferritin-like domain AS54_2117 PF00296 Luciferase-like monooxygenase AS54_2119 PF01593 Flavin containing amine oxidoreductase AS54_212 PF00831 Ribosomal L29 protein AS54_2120 PF13302 Acetyltransferase (GNAT) domain AS54_2121 PF00248 Aldo/keto reductase family AS54_2122 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS54_2122 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS54_2123 PF00583 Acetyltransferase (GNAT) family AS54_2126 PF14436 Bacterial EndoU nuclease AS54_2126 PF04740 LXG domain of WXG superfamily AS54_2127 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AS54_2127 PF01297 Zinc-uptake complex component A periplasmic AS54_2129 PF13460 NAD(P)H-binding AS54_213 PF00366 Ribosomal protein S17 AS54_2130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS54_2131 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AS54_2131 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AS54_2133 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_2134 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_2136 PF00300 Histidine phosphatase superfamily (branch 1) AS54_2138 PF08757 CotH kinase protein AS54_2139 PF00293 NUDIX domain AS54_214 PF00238 Ribosomal protein L14p/L23e AS54_2140 PF09335 SNARE associated Golgi protein AS54_2141 PF14667 Polysaccharide biosynthesis C-terminal domain AS54_2141 PF01943 Polysaccharide biosynthesis protein AS54_2143 PF03773 Predicted permease AS54_2144 PF09323 Domain of unknown function (DUF1980) AS54_2145 PF03061 Thioesterase superfamily AS54_2146 PF13396 Phospholipase_D-nuclease N-terminal AS54_2146 PF13091 PLD-like domain AS54_2149 PF13460 NAD(P)H-binding AS54_215 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AS54_215 PF00467 KOW motif AS54_2150 PF04306 Protein of unknown function (DUF456) AS54_2151 PF00571 CBS domain AS54_2151 PF01595 Cyclin M transmembrane N-terminal domain AS54_2151 PF03471 Transporter associated domain AS54_2154 PF05525 Branched-chain amino acid transport protein AS54_2155 PF01588 Putative tRNA binding domain AS54_2158 PF07454 Stage II sporulation protein P (SpoIIP) AS54_216 PF00673 ribosomal L5P family C-terminus AS54_216 PF00281 Ribosomal protein L5 AS54_2160 PF02557 D-alanyl-D-alanine carboxypeptidase AS54_2162 PF01425 Amidase AS54_2163 PF07690 Major Facilitator Superfamily AS54_2165 PF01145 SPFH domain / Band 7 family AS54_2166 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AS54_2166 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AS54_2168 PF06574 FAD synthetase AS54_2169 PF06052 3-hydroxyanthranilic acid dioxygenase AS54_217 PF00253 Ribosomal protein S14p/S29e AS54_2171 PF01042 Endoribonuclease L-PSP AS54_2172 PF00171 Aldehyde dehydrogenase family AS54_2173 PF01557 Fumarylacetoacetate (FAA) hydrolase family AS54_2174 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS54_2174 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AS54_2175 PF00682 HMGL-like AS54_2175 PF07836 DmpG-like communication domain AS54_2177 PF01361 Tautomerase enzyme AS54_2178 PF00300 Histidine phosphatase superfamily (branch 1) AS54_218 PF00410 Ribosomal protein S8 AS54_2181 PF00842 Alanine racemase, C-terminal domain AS54_2181 PF01168 Alanine racemase, N-terminal domain AS54_2185 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AS54_2186 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_2186 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_2187 PF00155 Aminotransferase class I and II AS54_2187 PF00392 Bacterial regulatory proteins, gntR family AS54_219 PF00347 Ribosomal protein L6 AS54_2193 PF00583 Acetyltransferase (GNAT) family AS54_22 PF02898 Nitric oxide synthase, oxygenase domain AS54_220 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AS54_2209 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AS54_221 PF03719 Ribosomal protein S5, C-terminal domain AS54_221 PF00333 Ribosomal protein S5, N-terminal domain AS54_2214 PF01209 ubiE/COQ5 methyltransferase family AS54_2215 PF01268 Formate--tetrahydrofolate ligase AS54_2217 PF00270 DEAD/DEAH box helicase AS54_2217 PF00271 Helicase conserved C-terminal domain AS54_2218 PF01261 Xylose isomerase-like TIM barrel AS54_2219 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_222 PF00327 Ribosomal protein L30p/L7e AS54_2221 PF00107 Zinc-binding dehydrogenase AS54_2221 PF08240 Alcohol dehydrogenase GroES-like domain AS54_2222 PF04542 Sigma-70 region 2 AS54_2222 PF08281 Sigma-70, region 4 AS54_2225 PF01613 Flavin reductase like domain AS54_2225 PF00258 Flavodoxin AS54_2227 PF00255 Glutathione peroxidase AS54_2228 PF01841 Transglutaminase-like superfamily AS54_2228 PF13559 Domain of unknown function (DUF4129) AS54_2228 PF11992 Domain of unknown function (DUF3488) AS54_2229 PF01882 Protein of unknown function DUF58 AS54_223 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AS54_2230 PF07726 ATPase family associated with various cellular activities (AAA) AS54_2230 PF17863 AAA lid domain AS54_2233 PF01568 Molydopterin dinucleotide binding domain AS54_2233 PF00384 Molybdopterin oxidoreductase AS54_2233 PF14710 Respiratory nitrate reductase alpha N-terminal AS54_2234 PF14711 Respiratory nitrate reductase beta C-terminal AS54_2234 PF13247 4Fe-4S dicluster domain AS54_2235 PF02613 Nitrate reductase delta subunit AS54_2236 PF02665 Nitrate reductase gamma subunit AS54_2237 PF00027 Cyclic nucleotide-binding domain AS54_2237 PF00325 Bacterial regulatory proteins, crp family AS54_2238 PF04055 Radical SAM superfamily AS54_2238 PF06463 Molybdenum Cofactor Synthesis C AS54_2239 PF00899 ThiF family AS54_224 PF00344 SecY translocase AS54_2240 PF03454 MoeA C-terminal region (domain IV) AS54_2240 PF00994 Probable molybdopterin binding domain AS54_2240 PF03453 MoeA N-terminal region (domain I and II) AS54_2241 PF02391 MoaE protein AS54_2243 PF07690 Major Facilitator Superfamily AS54_2246 PF01903 CbiX AS54_2247 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS54_2248 PF00355 Rieske [2Fe-2S] domain AS54_2249 PF04324 BFD-like [2Fe-2S] binding domain AS54_2249 PF18267 Rubredoxin NAD+ reductase C-terminal domain AS54_2249 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AS54_2249 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS54_2249 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_225 PF05191 Adenylate kinase, active site lid AS54_2250 PF04405 Domain of Unknown function (DUF542) AS54_2250 PF01814 Hemerythrin HHE cation binding domain AS54_2257 PF04232 Stage V sporulation protein S (SpoVS) AS54_226 PF00557 Metallopeptidase family M24 AS54_2265 PF01510 N-acetylmuramoyl-L-alanine amidase AS54_2267 PF18593 CdiI immunity protein AS54_227 PF01176 Translation initiation factor 1A / IF-1 AS54_2270 PF01966 HD domain AS54_2271 PF16326 ABC transporter C-terminal domain AS54_2271 PF00005 ABC transporter AS54_2271 PF12848 ABC transporter AS54_2274 PF00436 Single-strand binding protein family AS54_2276 PF01494 FAD binding domain AS54_2277 PF08712 Scaffold protein Nfu/NifU N terminal AS54_2277 PF13769 Virulence factor AS54_2279 PF06491 Disulphide isomerase AS54_228 PF00444 Ribosomal protein L36 AS54_2280 PF04445 Putative SAM-dependent methyltransferase AS54_2281 PF05746 DALR anticodon binding domain AS54_2281 PF03485 Arginyl tRNA synthetase N terminal domain AS54_2281 PF00750 tRNA synthetases class I (R) AS54_2285 PF08264 Anticodon-binding domain of tRNA AS54_2285 PF00133 tRNA synthetases class I (I, L, M and V) AS54_2288 PF08245 Mur ligase middle domain AS54_2288 PF02875 Mur ligase family, glutamate ligase domain AS54_2288 PF01225 Mur ligase family, catalytic domain AS54_2289 PF01336 OB-fold nucleic acid binding domain AS54_2289 PF00152 tRNA synthetases class II (D, K and N) AS54_229 PF00416 Ribosomal protein S13/S18 AS54_2293 PF12538 DNA transporter AS54_2293 PF01580 FtsK/SpoIIIE family AS54_23 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS54_23 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS54_230 PF00411 Ribosomal protein S11 AS54_231 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AS54_231 PF01000 RNA polymerase Rpb3/RpoA insert domain AS54_231 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AS54_2311 PF02595 Glycerate kinase family AS54_2312 PF00939 Sodium:sulfate symporter transmembrane region AS54_2313 PF00486 Transcriptional regulatory protein, C terminal AS54_2313 PF00072 Response regulator receiver domain AS54_2314 PF00512 His Kinase A (phospho-acceptor) domain AS54_2314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_2314 PF00672 HAMP domain AS54_2317 PF00209 Sodium:neurotransmitter symporter family AS54_232 PF01196 Ribosomal protein L17 AS54_2320 PF10997 Alternate to MurJ AS54_2321 PF13419 Haloacid dehalogenase-like hydrolase AS54_2323 PF00465 Iron-containing alcohol dehydrogenase AS54_2324 PF01177 Asp/Glu/Hydantoin racemase AS54_2325 PF01980 tRNA-methyltransferase O AS54_2326 PF00583 Acetyltransferase (GNAT) family AS54_2329 PF00005 ABC transporter AS54_233 PF00005 ABC transporter AS54_2330 PF05975 Bacterial ABC transporter protein EcsB AS54_2331 PF14005 YpjP-like protein AS54_2332 PF13419 Haloacid dehalogenase-like hydrolase AS54_2336 PF00144 Beta-lactamase AS54_2336 PF07930 D-aminopeptidase, domain B AS54_2338 PF00303 Thymidylate synthase AS54_2339 PF00186 Dihydrofolate reductase AS54_234 PF00005 ABC transporter AS54_2340 PF00905 Penicillin binding protein transpeptidase domain AS54_2340 PF03717 Penicillin-binding Protein dimerisation domain AS54_2340 PF05223 NTF2-like N-terminal transpeptidase domain AS54_2341 PF02525 Flavodoxin-like fold AS54_2342 PF01553 Acyltransferase AS54_2343 PF03006 Haemolysin-III related AS54_2344 PF02416 mttA/Hcf106 family AS54_2345 PF00902 Sec-independent protein translocase protein (TatC) AS54_2347 PF02645 Uncharacterised protein, DegV family COG1307 AS54_2349 PF02630 SCO1/SenC AS54_235 PF02361 Cobalt transport protein AS54_2350 PF00011 Hsp20/alpha crystallin family AS54_2351 PF00733 Asparagine synthase AS54_2351 PF13537 Glutamine amidotransferase domain AS54_2355 PF01497 Periplasmic binding protein AS54_2356 PF01063 Amino-transferase class IV AS54_2357 PF00881 Nitroreductase family AS54_236 PF01416 tRNA pseudouridine synthase AS54_2360 PF00857 Isochorismatase family AS54_2361 PF00293 NUDIX domain AS54_2362 PF00011 Hsp20/alpha crystallin family AS54_2363 PF00924 Mechanosensitive ion channel AS54_2364 PF07730 Histidine kinase AS54_2364 PF13185 GAF domain AS54_2365 PF00072 Response regulator receiver domain AS54_2365 PF00196 Bacterial regulatory proteins, luxR family AS54_2366 PF01418 Helix-turn-helix domain, rpiR family AS54_2366 PF01380 SIS domain AS54_2367 PF08240 Alcohol dehydrogenase GroES-like domain AS54_2367 PF00107 Zinc-binding dehydrogenase AS54_237 PF00572 Ribosomal protein L13 AS54_2370 PF00144 Beta-lactamase AS54_2372 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS54_2372 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS54_2375 PF03358 NADPH-dependent FMN reductase AS54_2378 PF00571 CBS domain AS54_2378 PF00005 ABC transporter AS54_2379 PF00528 Binding-protein-dependent transport system inner membrane component AS54_238 PF00380 Ribosomal protein S9/S16 AS54_2380 PF13520 Amino acid permease AS54_2386 PF03471 Transporter associated domain AS54_2386 PF01595 Cyclin M transmembrane N-terminal domain AS54_2386 PF00571 CBS domain AS54_2387 PF00171 Aldehyde dehydrogenase family AS54_2388 PF07997 Protein of unknown function (DUF1694) AS54_2389 PF09385 Histidine kinase N terminal AS54_2391 PF00202 Aminotransferase class-III AS54_2392 PF01144 Coenzyme A transferase AS54_2393 PF01144 Coenzyme A transferase AS54_2394 PF01546 Peptidase family M20/M25/M40 AS54_2394 PF07687 Peptidase dimerisation domain AS54_2395 PF00583 Acetyltransferase (GNAT) family AS54_2396 PF00158 Sigma-54 interaction domain AS54_2396 PF13426 PAS domain AS54_2396 PF02954 Bacterial regulatory protein, Fis family AS54_2397 PF12544 Lysine-2,3-aminomutase AS54_2398 PF14122 YokU-like protein, putative antitoxin AS54_2399 PF06855 YozE SAM-like fold AS54_240 PF01520 N-acetylmuramoyl-L-alanine amidase AS54_2402 PF14162 YozD-like protein AS54_2404 PF00069 Protein kinase domain AS54_2404 PF08239 Bacterial SH3 domain AS54_2405 PF07070 SpoOM protein AS54_2406 PF16916 Dimerisation domain of Zinc Transporter AS54_2406 PF01545 Cation efflux family AS54_2407 PF01569 PAP2 superfamily AS54_2408 PF00085 Thioredoxin AS54_241 PF10609 NUBPL iron-transfer P-loop NTPase AS54_242 PF17898 Spore germination GerD central core domain AS54_2424 PF10676 Spore germination protein gerPA/gerPF AS54_2427 PF00106 short chain dehydrogenase AS54_243 PF14089 KinB-signalling pathway activation in sporulation AS54_2431 PF00905 Penicillin binding protein transpeptidase domain AS54_2431 PF00912 Transglycosylase AS54_2432 PF07690 Major Facilitator Superfamily AS54_2433 PF07690 Major Facilitator Superfamily AS54_2434 PF01521 Iron-sulphur cluster biosynthesis AS54_2435 PF00285 Citrate synthase, C-terminal domain AS54_2436 PF03972 MmgE/PrpD family AS54_2438 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS54_2438 PF02770 Acyl-CoA dehydrogenase, middle domain AS54_2438 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS54_2439 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS54_2439 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS54_244 PF01522 Polysaccharide deacetylase AS54_2440 PF00171 Aldehyde dehydrogenase family AS54_2441 PF01810 LysE type translocator AS54_2442 PF00378 Enoyl-CoA hydratase/isomerase AS54_2444 PF10763 Protein of unknown function (DUF2584) AS54_2445 PF00149 Calcineurin-like phosphoesterase AS54_2445 PF12320 Type 5 capsule protein repressor C-terminal domain AS54_2446 PF13476 AAA domain AS54_2448 PF01022 Bacterial regulatory protein, arsR family AS54_2450 PF07690 Major Facilitator Superfamily AS54_2451 PF00106 short chain dehydrogenase AS54_2452 PF00425 chorismate binding enzyme AS54_2453 PF13193 AMP-binding enzyme C-terminal domain AS54_2453 PF00501 AMP-binding enzyme AS54_2454 PF00550 Phosphopantetheine attachment site AS54_2454 PF00857 Isochorismatase family AS54_2455 PF00550 Phosphopantetheine attachment site AS54_2455 PF00975 Thioesterase domain AS54_2455 PF00668 Condensation domain AS54_2455 PF00501 AMP-binding enzyme AS54_2455 PF13193 AMP-binding enzyme C-terminal domain AS54_2456 PF03621 MbtH-like protein AS54_2457 PF07690 Major Facilitator Superfamily AS54_2460 PF00216 Bacterial DNA-binding protein AS54_2462 PF05163 DinB family AS54_2463 PF00082 Subtilase family AS54_2464 PF01235 Sodium:alanine symporter family AS54_2467 PF16291 Domain of unknown function (DUF4937 AS54_2468 PF01479 S4 domain AS54_2468 PF00849 RNA pseudouridylate synthase AS54_2469 PF03129 Anticodon binding domain AS54_2469 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS54_2469 PF02824 TGS domain AS54_2469 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS54_2471 PF00005 ABC transporter AS54_2473 PF12146 Serine aminopeptidase, S33 AS54_2474 PF07690 Major Facilitator Superfamily AS54_2478 PF13649 Methyltransferase domain AS54_2488 PF16123 Hydroxyacylglutathione hydrolase C-terminus AS54_2488 PF00753 Metallo-beta-lactamase superfamily AS54_2490 PF03176 MMPL family AS54_2492 PF00302 Chloramphenicol acetyltransferase AS54_2495 PF00583 Acetyltransferase (GNAT) family AS54_25 PF02293 AmiS/UreI family transporter AS54_2503 PF08241 Methyltransferase domain AS54_2504 PF13302 Acetyltransferase (GNAT) domain AS54_2506 PF00313 'Cold-shock' DNA-binding domain AS54_2511 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_2511 PF03466 LysR substrate binding domain AS54_2512 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS54_2512 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS54_2515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_2515 PF03466 LysR substrate binding domain AS54_2516 PF03473 MOSC domain AS54_2516 PF03475 3-alpha domain AS54_2519 PF00664 ABC transporter transmembrane region AS54_2519 PF00005 ABC transporter AS54_2520 PF00005 ABC transporter AS54_2520 PF00664 ABC transporter transmembrane region AS54_2523 PF01810 LysE type translocator AS54_2524 PF01381 Helix-turn-helix AS54_2524 PF07883 Cupin domain AS54_2530 PF04607 Region found in RelA / SpoT proteins AS54_2530 PF02824 TGS domain AS54_2530 PF13291 ACT domain AS54_2532 PF00890 FAD binding domain AS54_2533 PF04542 Sigma-70 region 2 AS54_2533 PF08281 Sigma-70, region 4 AS54_2533 PF12680 SnoaL-like domain AS54_2538 PF02638 Glycosyl hydrolase-like 10 AS54_2540 PF02378 Phosphotransferase system, EIIC AS54_2542 PF03702 Anhydro-N-acetylmuramic acid kinase AS54_2543 PF01869 BadF/BadG/BcrA/BcrD ATPase family AS54_2544 PF02660 Glycerol-3-phosphate acyltransferase AS54_2545 PF00266 Aminotransferase class-V AS54_2546 PF00291 Pyridoxal-phosphate dependent enzyme AS54_2550 PF00753 Metallo-beta-lactamase superfamily AS54_2550 PF16123 Hydroxyacylglutathione hydrolase C-terminus AS54_2553 PF00270 DEAD/DEAH box helicase AS54_2553 PF00271 Helicase conserved C-terminal domain AS54_2555 PF17932 Tetracyclin repressor-like, C-terminal domain AS54_2555 PF00440 Bacterial regulatory proteins, tetR family AS54_2558 PF12704 MacB-like periplasmic core domain AS54_2558 PF00005 ABC transporter AS54_2558 PF02687 FtsX-like permease family AS54_2559 PF03848 Tellurite resistance protein TehB AS54_2559 PF09313 Domain of unknown function (DUF1971) AS54_2561 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_2561 PF00205 Thiamine pyrophosphate enzyme, central domain AS54_2561 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_2562 PF14659 Phage integrase, N-terminal SAM-like domain AS54_2562 PF00589 Phage integrase family AS54_2576 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_2576 PF00205 Thiamine pyrophosphate enzyme, central domain AS54_2576 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_2577 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_2577 PF00205 Thiamine pyrophosphate enzyme, central domain AS54_2577 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_2578 PF12802 MarR family AS54_2579 PF00300 Histidine phosphatase superfamily (branch 1) AS54_258 PF02595 Glycerate kinase family AS54_2580 PF14171 Toxin SpoIISA, type II toxin-antitoxin system AS54_2585 PF07687 Peptidase dimerisation domain AS54_2585 PF01546 Peptidase family M20/M25/M40 AS54_2588 PF00132 Bacterial transferase hexapeptide (six repeats) AS54_2589 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_2589 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_259 PF00491 Arginase family AS54_2591 PF00905 Penicillin binding protein transpeptidase domain AS54_2591 PF03717 Penicillin-binding Protein dimerisation domain AS54_2591 PF05223 NTF2-like N-terminal transpeptidase domain AS54_2592 PF04542 Sigma-70 region 2 AS54_2592 PF08281 Sigma-70, region 4 AS54_2594 PF00905 Penicillin binding protein transpeptidase domain AS54_2594 PF03717 Penicillin-binding Protein dimerisation domain AS54_2598 PF00356 Bacterial regulatory proteins, lacI family AS54_2599 PF07690 Major Facilitator Superfamily AS54_260 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS54_2600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS54_2600 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS54_2601 PF00294 pfkB family carbohydrate kinase AS54_2602 PF00171 Aldehyde dehydrogenase family AS54_2603 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_2603 PF00205 Thiamine pyrophosphate enzyme, central domain AS54_2603 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_2604 PF01261 Xylose isomerase-like TIM barrel AS54_2605 PF01116 Fructose-bisphosphate aldolase class-II AS54_2606 PF04962 KduI/IolB family AS54_261 PF07949 YbbR-like protein AS54_2611 PF02872 5'-nucleotidase, C-terminal domain AS54_2611 PF00149 Calcineurin-like phosphoesterase AS54_2613 PF18801 response regulator aspartate phosphatase H, N terminal AS54_2614 PF01381 Helix-turn-helix AS54_2617 PF02557 D-alanyl-D-alanine carboxypeptidase AS54_2619 PF01520 N-acetylmuramoyl-L-alanine amidase AS54_2619 PF00395 S-layer homology domain AS54_262 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AS54_262 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AS54_262 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AS54_262 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AS54_2620 PF07968 Leukocidin/Hemolysin toxin family AS54_2621 PF00440 Bacterial regulatory proteins, tetR family AS54_2623 PF00563 EAL domain AS54_2623 PF00990 Diguanylate cyclase, GGDEF domain AS54_2623 PF03707 Bacterial signalling protein N terminal repeat AS54_2624 PF13302 Acetyltransferase (GNAT) domain AS54_2625 PF02743 Cache domain AS54_2625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_2625 PF00672 HAMP domain AS54_2626 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_2627 PF00581 Rhodanese-like domain AS54_263 PF01380 SIS domain AS54_2631 PF02770 Acyl-CoA dehydrogenase, middle domain AS54_2631 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS54_2631 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS54_2632 PF02785 Biotin carboxylase C-terminal domain AS54_2632 PF00289 Biotin carboxylase, N-terminal domain AS54_2632 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS54_2633 PF00364 Biotin-requiring enzyme AS54_2634 PF00682 HMGL-like AS54_2635 PF00378 Enoyl-CoA hydratase/isomerase AS54_2636 PF01039 Carboxyl transferase domain AS54_2637 PF16177 Acetyl-coenzyme A synthetase N-terminus AS54_2637 PF00501 AMP-binding enzyme AS54_2637 PF13193 AMP-binding enzyme C-terminal domain AS54_2640 PF00485 Phosphoribulokinase / Uridine kinase family AS54_2643 PF05163 DinB family AS54_2644 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_2644 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_2645 PF00512 His Kinase A (phospho-acceptor) domain AS54_2645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_2646 PF00072 Response regulator receiver domain AS54_2646 PF00486 Transcriptional regulatory protein, C terminal AS54_2647 PF01966 HD domain AS54_2648 PF01048 Phosphorylase superfamily AS54_2652 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS54_2652 PF01447 Thermolysin metallopeptidase, catalytic domain AS54_2652 PF03413 Peptidase propeptide and YPEB domain AS54_2652 PF07504 Fungalysin/Thermolysin Propeptide Motif AS54_2656 PF17755 UvrA DNA-binding domain AS54_2656 PF17755 UvrA DNA-binding domain AS54_2656 PF17760 UvrA interaction domain AS54_2656 PF17760 UvrA interaction domain AS54_266 PF07729 FCD domain AS54_266 PF00392 Bacterial regulatory proteins, gntR family AS54_2660 PF09278 MerR, DNA binding AS54_2660 PF00376 MerR family regulatory protein AS54_2661 PF07690 Major Facilitator Superfamily AS54_2663 PF13847 Methyltransferase domain AS54_267 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS54_267 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS54_2670 PF00155 Aminotransferase class I and II AS54_2670 PF00392 Bacterial regulatory proteins, gntR family AS54_2679 PF08450 SMP-30/Gluconolactonase/LRE-like region AS54_268 PF02447 GntP family permease AS54_2681 PF01921 tRNA synthetases class I (K) AS54_2682 PF07486 Cell Wall Hydrolase AS54_2684 PF00486 Transcriptional regulatory protein, C terminal AS54_2684 PF00072 Response regulator receiver domain AS54_2685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_269 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS54_269 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS54_2691 PF00005 ABC transporter AS54_2692 PF02687 FtsX-like permease family AS54_2696 PF03447 Homoserine dehydrogenase, NAD binding domain AS54_2696 PF01842 ACT domain AS54_2696 PF00742 Homoserine dehydrogenase AS54_2697 PF00155 Aminotransferase class I and II AS54_2697 PF00392 Bacterial regulatory proteins, gntR family AS54_2698 PF07478 D-ala D-ala ligase C-terminus AS54_2698 PF01820 D-ala D-ala ligase N-terminus AS54_2699 PF03070 TENA/THI-4/PQQC family AS54_27 PF16363 GDP-mannose 4,6 dehydratase AS54_270 PF00326 Prolyl oligopeptidase family AS54_270 PF07676 WD40-like Beta Propeller Repeat AS54_2716 PF00067 Cytochrome P450 AS54_2718 PF00132 Bacterial transferase hexapeptide (six repeats) AS54_2719 PF07561 Domain of Unknown Function (DUF1540) AS54_2721 PF00067 Cytochrome P450 AS54_2724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_2724 PF00989 PAS fold AS54_2724 PF13188 PAS domain AS54_2724 PF13426 PAS domain AS54_2724 PF00512 His Kinase A (phospho-acceptor) domain AS54_2726 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AS54_2727 PF01177 Asp/Glu/Hydantoin racemase AS54_2728 PF07155 ECF-type riboflavin transporter, S component AS54_2729 PF00005 ABC transporter AS54_2729 PF12558 ATP-binding cassette cobalt transporter AS54_2732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_2732 PF00512 His Kinase A (phospho-acceptor) domain AS54_2734 PF04229 GrpB protein AS54_2735 PF00107 Zinc-binding dehydrogenase AS54_2735 PF08240 Alcohol dehydrogenase GroES-like domain AS54_2736 PF01569 PAP2 superfamily AS54_2738 PF08361 MAATS-type transcriptional repressor, C-terminal region AS54_2738 PF00440 Bacterial regulatory proteins, tetR family AS54_2741 PF11954 Domain of unknown function (DUF3471) AS54_2741 PF00144 Beta-lactamase AS54_2747 PF01965 DJ-1/PfpI family AS54_2748 PF00144 Beta-lactamase AS54_2750 PF07690 Major Facilitator Superfamily AS54_2754 PF03009 Glycerophosphoryl diester phosphodiesterase family AS54_2757 PF00155 Aminotransferase class I and II AS54_2757 PF00392 Bacterial regulatory proteins, gntR family AS54_2758 PF00892 EamA-like transporter family AS54_2765 PF07690 Major Facilitator Superfamily AS54_2766 PF00293 NUDIX domain AS54_2766 PF09297 NADH pyrophosphatase zinc ribbon domain AS54_2767 PF02768 DNA polymerase III beta subunit, C-terminal domain AS54_2767 PF00712 DNA polymerase III beta subunit, N-terminal domain AS54_2767 PF02767 DNA polymerase III beta subunit, central domain AS54_2768 PF00293 NUDIX domain AS54_277 PF00528 Binding-protein-dependent transport system inner membrane component AS54_2773 PF00300 Histidine phosphatase superfamily (branch 1) AS54_2775 PF09234 Domain of unknown function (DUF1963) AS54_278 PF00005 ABC transporter AS54_278 PF09383 NIL domain AS54_2780 PF01734 Patatin-like phospholipase AS54_2781 PF08000 Bacterial PH domain AS54_2783 PF12867 DinB superfamily AS54_2786 PF02673 Bacitracin resistance protein BacA AS54_2788 PF01541 GIY-YIG catalytic domain AS54_279 PF03180 NLPA lipoprotein AS54_2795 PF01266 FAD dependent oxidoreductase AS54_2799 PF13419 Haloacid dehalogenase-like hydrolase AS54_28 PF03006 Haemolysin-III related AS54_2802 PF01569 PAP2 superfamily AS54_2803 PF03714 Bacterial pullanase-associated domain AS54_2803 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS54_2803 PF00128 Alpha amylase, catalytic domain AS54_2804 PF07504 Fungalysin/Thermolysin Propeptide Motif AS54_2804 PF03413 Peptidase propeptide and YPEB domain AS54_2804 PF01447 Thermolysin metallopeptidase, catalytic domain AS54_2804 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS54_2809 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_2810 PF00344 SecY translocase AS54_2811 PF11638 DnaA N-terminal domain AS54_2811 PF08299 Bacterial dnaA protein helix-turn-helix AS54_2811 PF00308 Bacterial dnaA protein AS54_2812 PF00892 EamA-like transporter family AS54_2813 PF00392 Bacterial regulatory proteins, gntR family AS54_2813 PF00155 Aminotransferase class I and II AS54_2814 PF00561 alpha/beta hydrolase fold AS54_2819 PF06081 Aromatic acid exporter family member 1 AS54_282 PF01565 FAD binding domain AS54_2822 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AS54_2823 PF14620 YpeB sporulation AS54_2823 PF03413 Peptidase propeptide and YPEB domain AS54_2824 PF01471 Putative peptidoglycan binding domain AS54_2824 PF07486 Cell Wall Hydrolase AS54_2827 PF03301 Tryptophan 2,3-dioxygenase AS54_2828 PF04199 Putative cyclase AS54_2829 PF00266 Aminotransferase class-V AS54_283 PF07690 Major Facilitator Superfamily AS54_2830 PF00440 Bacterial regulatory proteins, tetR family AS54_2830 PF08359 YsiA-like protein, C-terminal region AS54_2831 PF00293 NUDIX domain AS54_2831 PF13344 Haloacid dehalogenase-like hydrolase AS54_2835 PF02954 Bacterial regulatory protein, Fis family AS54_2835 PF01590 GAF domain AS54_2835 PF00158 Sigma-54 interaction domain AS54_2838 PF13302 Acetyltransferase (GNAT) domain AS54_2839 PF00455 DeoR C terminal sensor domain AS54_2839 PF08220 DeoR-like helix-turn-helix domain AS54_2842 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS54_2842 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_2842 PF00403 Heavy-metal-associated domain AS54_2843 PF02082 Transcriptional regulator AS54_2846 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_2846 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS54_2847 PF02817 e3 binding domain AS54_2847 PF00364 Biotin-requiring enzyme AS54_2847 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS54_2848 PF02779 Transketolase, pyrimidine binding domain AS54_2848 PF02780 Transketolase, C-terminal domain AS54_2849 PF00676 Dehydrogenase E1 component AS54_285 PF07690 Major Facilitator Superfamily AS54_2851 PF00106 short chain dehydrogenase AS54_2852 PF04229 GrpB protein AS54_2852 PF13673 Acetyltransferase (GNAT) domain AS54_2853 PF00485 Phosphoribulokinase / Uridine kinase family AS54_2855 PF00293 NUDIX domain AS54_2860 PF00528 Binding-protein-dependent transport system inner membrane component AS54_2861 PF00571 CBS domain AS54_2861 PF00005 ABC transporter AS54_2862 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AS54_2863 PF00574 Clp protease AS54_2866 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AS54_2867 PF13673 Acetyltransferase (GNAT) domain AS54_2868 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AS54_2868 PF18416 N-acetylglucosamine binding protein domain 2 AS54_2869 PF01202 Shikimate kinase AS54_2870 PF10990 Protein of unknown function (DUF2809) AS54_2871 PF08241 Methyltransferase domain AS54_2872 PF04237 YjbR AS54_2873 PF13673 Acetyltransferase (GNAT) domain AS54_2874 PF00753 Metallo-beta-lactamase superfamily AS54_2874 PF03772 Competence protein AS54_2874 PF13567 Domain of unknown function (DUF4131) AS54_288 PF00528 Binding-protein-dependent transport system inner membrane component AS54_2884 PF13538 UvrD-like helicase C-terminal domain AS54_2887 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AS54_2888 PF09382 RQC domain AS54_2888 PF16124 RecQ zinc-binding AS54_2888 PF00570 HRDC domain AS54_2888 PF00271 Helicase conserved C-terminal domain AS54_2888 PF00270 DEAD/DEAH box helicase AS54_289 PF12911 N-terminal TM domain of oligopeptide transport permease C AS54_289 PF00528 Binding-protein-dependent transport system inner membrane component AS54_2896 PF01368 DHH family AS54_2896 PF02833 DHHA2 domain AS54_2897 PF18416 N-acetylglucosamine binding protein domain 2 AS54_2897 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AS54_2899 PF02627 Carboxymuconolactone decarboxylase family AS54_290 PF00005 ABC transporter AS54_290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_2900 PF01235 Sodium:alanine symporter family AS54_2901 PF00171 Aldehyde dehydrogenase family AS54_2902 PF00701 Dihydrodipicolinate synthetase family AS54_2903 PF05544 Proline racemase AS54_2904 PF05544 Proline racemase AS54_2905 PF01266 FAD dependent oxidoreductase AS54_2906 PF02954 Bacterial regulatory protein, Fis family AS54_2906 PF00158 Sigma-54 interaction domain AS54_2906 PF13188 PAS domain AS54_2907 PF04324 BFD-like [2Fe-2S] binding domain AS54_2907 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_2909 PF04324 BFD-like [2Fe-2S] binding domain AS54_2909 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_291 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_291 PF00005 ABC transporter AS54_2912 PF08876 Domain of unknown function (DUF1836) AS54_2913 PF09335 SNARE associated Golgi protein AS54_2916 PF04914 DltD protein AS54_2917 PF13673 Acetyltransferase (GNAT) domain AS54_2917 PF13302 Acetyltransferase (GNAT) domain AS54_2917 PF00958 GMP synthase C terminal domain AS54_2917 PF00117 Glutamine amidotransferase class-I AS54_2917 PF03352 Methyladenine glycosylase AS54_2918 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_2919 PF00877 NlpC/P60 family AS54_2919 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AS54_292 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_2920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS54_2920 PF13378 Enolase C-terminal domain-like AS54_2924 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS54_2929 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AS54_2929 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AS54_2930 PF00512 His Kinase A (phospho-acceptor) domain AS54_2930 PF00989 PAS fold AS54_2930 PF16736 Single Cache-like AS54_2930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_2931 PF00072 Response regulator receiver domain AS54_2931 PF00486 Transcriptional regulatory protein, C terminal AS54_2935 PF01048 Phosphorylase superfamily AS54_2936 PF03808 Glycosyl transferase WecB/TagA/CpsF family AS54_2937 PF08439 Oligopeptidase F AS54_2937 PF01432 Peptidase family M3 AS54_2938 PF13520 Amino acid permease AS54_2939 PF01037 Lrp/AsnC ligand binding domain AS54_294 PF12833 Helix-turn-helix domain AS54_2940 PF02645 Uncharacterised protein, DegV family COG1307 AS54_2941 PF07552 Spore Coat Protein X and V domain AS54_2947 PF07690 Major Facilitator Superfamily AS54_2949 PF04519 Polymer-forming cytoskeletal AS54_2950 PF13171 Protein of unknown function (DUF4004) AS54_2951 PF12793 Sugar transport-related sRNA regulator N-term AS54_2951 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_2952 PF07690 Major Facilitator Superfamily AS54_2956 PF04226 Transglycosylase associated protein AS54_2957 PF01156 Inosine-uridine preferring nucleoside hydrolase AS54_2959 PF08241 Methyltransferase domain AS54_296 PF00440 Bacterial regulatory proteins, tetR family AS54_2965 PF00155 Aminotransferase class I and II AS54_2966 PF07977 FabA-like domain AS54_2967 PF03630 Fumble AS54_2971 PF00005 ABC transporter AS54_2979 PF01594 AI-2E family transporter AS54_298 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_2981 PF00296 Luciferase-like monooxygenase AS54_2982 PF00528 Binding-protein-dependent transport system inner membrane component AS54_2983 PF09084 NMT1/THI5 like AS54_2984 PF00005 ABC transporter AS54_299 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_2990 PF02522 Aminoglycoside 3-N-acetyltransferase AS54_2995 PF13536 Putative multidrug resistance efflux transporter AS54_2996 PF12867 DinB superfamily AS54_30 PF03880 DbpA RNA binding domain AS54_30 PF00270 DEAD/DEAH box helicase AS54_30 PF00271 Helicase conserved C-terminal domain AS54_300 PF00248 Aldo/keto reductase family AS54_3002 PF01522 Polysaccharide deacetylase AS54_3004 PF03741 Integral membrane protein TerC family AS54_3005 PF00884 Sulfatase AS54_3006 PF12848 ABC transporter AS54_3006 PF00005 ABC transporter AS54_3008 PF03176 MMPL family AS54_3009 PF16295 Tetracyclin repressor-like, C-terminal domain AS54_3009 PF00440 Bacterial regulatory proteins, tetR family AS54_301 PF03807 NADP oxidoreductase coenzyme F420-dependent AS54_301 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS54_3011 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS54_3012 PF01842 ACT domain AS54_3012 PF02153 Prephenate dehydrogenase AS54_3013 PF00155 Aminotransferase class I and II AS54_3014 PF01264 Chorismate synthase AS54_3015 PF01817 Chorismate mutase type II AS54_3015 PF00793 DAHP synthetase I family AS54_3019 PF01636 Phosphotransferase enzyme family AS54_302 PF04973 Nicotinamide mononucleotide transporter AS54_3023 PF06725 3D domain AS54_3023 PF01476 LysM domain AS54_3026 PF00378 Enoyl-CoA hydratase/isomerase AS54_3027 PF00501 AMP-binding enzyme AS54_3027 PF13193 AMP-binding enzyme C-terminal domain AS54_3028 PF02954 Bacterial regulatory protein, Fis family AS54_3028 PF00989 PAS fold AS54_3028 PF00158 Sigma-54 interaction domain AS54_303 PF06800 Sugar transport protein AS54_3031 PF06039 Malate:quinone oxidoreductase (Mqo) AS54_3032 PF13407 Periplasmic binding protein domain AS54_3033 PF02653 Branched-chain amino acid transport system / permease component AS54_3034 PF02653 Branched-chain amino acid transport system / permease component AS54_3035 PF00005 ABC transporter AS54_3036 PF00325 Bacterial regulatory proteins, crp family AS54_3036 PF04198 Putative sugar-binding domain AS54_3037 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS54_3037 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS54_3039 PF01791 DeoC/LacD family aldolase AS54_304 PF00528 Binding-protein-dependent transport system inner membrane component AS54_3044 PF03992 Antibiotic biosynthesis monooxygenase AS54_3048 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_3048 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_3049 PF00171 Aldehyde dehydrogenase family AS54_3050 PF00696 Amino acid kinase family AS54_3050 PF01472 PUA domain AS54_3051 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS54_3051 PF03807 NADP oxidoreductase coenzyme F420-dependent AS54_3052 PF01546 Peptidase family M20/M25/M40 AS54_3053 PF01614 Bacterial transcriptional regulator AS54_3053 PF09339 IclR helix-turn-helix domain AS54_3054 PF00324 Amino acid permease AS54_3055 PF01139 tRNA-splicing ligase RtcB AS54_3056 PF00487 Fatty acid desaturase AS54_3057 PF00245 Alkaline phosphatase AS54_3058 PF11188 Protein of unknown function (DUF2975) AS54_3059 PF13443 Cro/C1-type HTH DNA-binding domain AS54_306 PF12727 PBP superfamily domain AS54_306 PF12728 Helix-turn-helix domain AS54_3062 PF10086 YhfC intramembrane metalloprotease AS54_3064 PF00072 Response regulator receiver domain AS54_3064 PF04397 LytTr DNA-binding domain AS54_3066 PF13302 Acetyltransferase (GNAT) domain AS54_3067 PF12681 Glyoxalase-like domain AS54_3072 PF07726 ATPase family associated with various cellular activities (AAA) AS54_3072 PF17863 AAA lid domain AS54_3075 PF07690 Major Facilitator Superfamily AS54_3080 PF00535 Glycosyl transferase family 2 AS54_3081 PF00535 Glycosyl transferase family 2 AS54_3083 PF00202 Aminotransferase class-III AS54_3084 PF00199 Catalase AS54_3084 PF06628 Catalase-related immune-responsive AS54_3086 PF13382 Adenine deaminase C-terminal domain AS54_3086 PF01979 Amidohydrolase family AS54_3087 PF00144 Beta-lactamase AS54_309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_309 PF03466 LysR substrate binding domain AS54_3093 PF00881 Nitroreductase family AS54_3094 PF01047 MarR family AS54_3098 PF00293 NUDIX domain AS54_310 PF00892 EamA-like transporter family AS54_3101 PF00005 ABC transporter AS54_3102 PF00392 Bacterial regulatory proteins, gntR family AS54_3104 PF16363 GDP-mannose 4,6 dehydratase AS54_3105 PF00005 ABC transporter AS54_3105 PF12704 MacB-like periplasmic core domain AS54_3105 PF02687 FtsX-like permease family AS54_311 PF14142 YrzO-like protein AS54_3110 PF12833 Helix-turn-helix domain AS54_3111 PF00583 Acetyltransferase (GNAT) family AS54_3114 PF00892 EamA-like transporter family AS54_3115 PF00392 Bacterial regulatory proteins, gntR family AS54_3115 PF00155 Aminotransferase class I and II AS54_3117 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AS54_3118 PF13031 Protein of unknown function (DUF3892) AS54_3120 PF00672 HAMP domain AS54_3120 PF00512 His Kinase A (phospho-acceptor) domain AS54_3121 PF00072 Response regulator receiver domain AS54_3121 PF00486 Transcriptional regulatory protein, C terminal AS54_3122 PF00561 alpha/beta hydrolase fold AS54_3128 PF01925 Sulfite exporter TauE/SafE AS54_313 PF01553 Acyltransferase AS54_3130 PF00324 Amino acid permease AS54_3132 PF08713 DNA alkylation repair enzyme AS54_3133 PF09278 MerR, DNA binding AS54_3133 PF00376 MerR family regulatory protein AS54_3136 PF00293 NUDIX domain AS54_3137 PF04989 Cephalosporin hydroxylase AS54_3138 PF10502 Signal peptidase, peptidase S26 AS54_3141 PF02146 Sir2 family AS54_3142 PF01470 Pyroglutamyl peptidase AS54_3146 PF03746 LamB/YcsF family AS54_3147 PF02626 Carboxyltransferase domain, subdomain A and B AS54_3148 PF02682 Carboxyltransferase domain, subdomain C and D AS54_3149 PF01614 Bacterial transcriptional regulator AS54_3149 PF09339 IclR helix-turn-helix domain AS54_315 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS54_315 PF00356 Bacterial regulatory proteins, lacI family AS54_3150 PF10502 Signal peptidase, peptidase S26 AS54_3151 PF03932 CutC family AS54_3152 PF07454 Stage II sporulation protein P (SpoIIP) AS54_3155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS54_3155 PF02770 Acyl-CoA dehydrogenase, middle domain AS54_3155 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AS54_3163 PF00440 Bacterial regulatory proteins, tetR family AS54_3164 PF00391 PEP-utilising enzyme, mobile domain AS54_3164 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AS54_3166 PF00753 Metallo-beta-lactamase superfamily AS54_3169 PF07875 Coat F domain AS54_317 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_317 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_3171 PF08892 YqcI/YcgG family AS54_3172 PF01810 LysE type translocator AS54_3173 PF00324 Amino acid permease AS54_3175 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS54_3176 PF10710 Protein of unknown function (DUF2512) AS54_3177 PF11553 Protein of unknown function (DUF3231) AS54_3178 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS54_3179 PF08240 Alcohol dehydrogenase GroES-like domain AS54_3179 PF13823 Alcohol dehydrogenase GroES-associated AS54_3179 PF00107 Zinc-binding dehydrogenase AS54_3182 PF11798 IMS family HHH motif AS54_3182 PF11799 impB/mucB/samB family C-terminal domain AS54_3182 PF00817 impB/mucB/samB family AS54_3184 PF00144 Beta-lactamase AS54_3185 PF02872 5'-nucleotidase, C-terminal domain AS54_3185 PF17936 Bacterial Ig domain AS54_3185 PF00149 Calcineurin-like phosphoesterase AS54_3186 PF03992 Antibiotic biosynthesis monooxygenase AS54_3188 PF01544 CorA-like Mg2+ transporter protein AS54_3191 PF11181 Heat induced stress protein YflT AS54_3193 PF08240 Alcohol dehydrogenase GroES-like domain AS54_3193 PF00107 Zinc-binding dehydrogenase AS54_3195 PF00067 Cytochrome P450 AS54_3196 PF00440 Bacterial regulatory proteins, tetR family AS54_3196 PF17922 Tetracyclin repressor-like, C-terminal domain AS54_3197 PF07859 alpha/beta hydrolase fold AS54_3198 PF07859 alpha/beta hydrolase fold AS54_32 PF00478 IMP dehydrogenase / GMP reductase domain AS54_320 PF01026 TatD related DNase AS54_3200 PF03073 TspO/MBR family AS54_3201 PF00875 DNA photolyase AS54_3201 PF03441 FAD binding domain of DNA photolyase AS54_3203 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AS54_3204 PF00361 Proton-conducting membrane transporter AS54_3204 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AS54_3205 PF10057 Uncharacterized conserved protein (DUF2294) AS54_3208 PF07726 ATPase family associated with various cellular activities (AAA) AS54_3208 PF17863 AAA lid domain AS54_3209 PF01040 UbiA prenyltransferase family AS54_3210 PF00561 alpha/beta hydrolase fold AS54_3211 PF12996 DUF based on E. rectale Gene description (DUF3880) AS54_3213 PF00005 ABC transporter AS54_3214 PF02687 FtsX-like permease family AS54_3216 PF00072 Response regulator receiver domain AS54_3216 PF04397 LytTr DNA-binding domain AS54_3217 PF01297 Zinc-uptake complex component A periplasmic AS54_3218 PF00950 ABC 3 transport family AS54_3219 PF00005 ABC transporter AS54_322 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) AS54_3223 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS54_3224 PF01758 Sodium Bile acid symporter family AS54_3225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_3226 PF01022 Bacterial regulatory protein, arsR family AS54_3230 PF00012 Hsp70 protein AS54_3231 PF07690 Major Facilitator Superfamily AS54_3234 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_3236 PF00144 Beta-lactamase AS54_3240 PF12802 MarR family AS54_3241 PF00067 Cytochrome P450 AS54_3241 PF00175 Oxidoreductase NAD-binding domain AS54_3241 PF00667 FAD binding domain AS54_3241 PF00258 Flavodoxin AS54_3242 PF07690 Major Facilitator Superfamily AS54_3247 PF00486 Transcriptional regulatory protein, C terminal AS54_3247 PF00072 Response regulator receiver domain AS54_3248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_3248 PF00512 His Kinase A (phospho-acceptor) domain AS54_3248 PF00672 HAMP domain AS54_3253 PF00291 Pyridoxal-phosphate dependent enzyme AS54_3255 PF00144 Beta-lactamase AS54_3258 PF00753 Metallo-beta-lactamase superfamily AS54_3259 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AS54_326 PF16326 ABC transporter C-terminal domain AS54_326 PF12848 ABC transporter AS54_326 PF00005 ABC transporter AS54_3261 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS54_3261 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS54_3264 PF02073 Thermophilic metalloprotease (M29) AS54_3267 PF04072 Leucine carboxyl methyltransferase AS54_3271 PF00271 Helicase conserved C-terminal domain AS54_3271 PF02810 SEC-C motif AS54_3271 PF07516 SecA Wing and Scaffold domain AS54_3271 PF01043 SecA preprotein cross-linking domain AS54_3271 PF07517 SecA DEAD-like domain AS54_3273 PF00005 ABC transporter AS54_3274 PF02687 FtsX-like permease family AS54_3277 PF00512 His Kinase A (phospho-acceptor) domain AS54_3277 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_3277 PF00672 HAMP domain AS54_3278 PF00486 Transcriptional regulatory protein, C terminal AS54_3278 PF00072 Response regulator receiver domain AS54_328 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_3280 PF01047 MarR family AS54_3281 PF00583 Acetyltransferase (GNAT) family AS54_3282 PF04299 Putative FMN-binding domain AS54_3283 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_3283 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_3284 PF07690 Major Facilitator Superfamily AS54_3285 PF02589 LUD domain AS54_3286 PF13183 4Fe-4S dicluster domain AS54_3286 PF11870 Domain of unknown function (DUF3390) AS54_3286 PF02589 LUD domain AS54_3287 PF02754 Cysteine-rich domain AS54_3288 PF03466 LysR substrate binding domain AS54_3288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_329 PF00528 Binding-protein-dependent transport system inner membrane component AS54_3293 PF17676 LD-carboxypeptidase C-terminal domain AS54_3293 PF02016 LD-carboxypeptidase N-terminal domain AS54_3295 PF00753 Metallo-beta-lactamase superfamily AS54_3296 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_3297 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS54_3297 PF01447 Thermolysin metallopeptidase, catalytic domain AS54_3297 PF07504 Fungalysin/Thermolysin Propeptide Motif AS54_3297 PF03413 Peptidase propeptide and YPEB domain AS54_3298 PF03009 Glycerophosphoryl diester phosphodiesterase family AS54_33 PF08439 Oligopeptidase F AS54_33 PF01432 Peptidase family M3 AS54_330 PF00528 Binding-protein-dependent transport system inner membrane component AS54_330 PF12911 N-terminal TM domain of oligopeptide transport permease C AS54_3300 PF02557 D-alanyl-D-alanine carboxypeptidase AS54_3301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_3301 PF00512 His Kinase A (phospho-acceptor) domain AS54_3302 PF00486 Transcriptional regulatory protein, C terminal AS54_3302 PF00072 Response regulator receiver domain AS54_3303 PF00144 Beta-lactamase AS54_3305 PF01609 Transposase DDE domain AS54_3308 PF07690 Major Facilitator Superfamily AS54_3309 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS54_3309 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS54_331 PF00005 ABC transporter AS54_331 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_3310 PF05116 Sucrose-6F-phosphate phosphohydrolase AS54_3311 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AS54_3312 PF00356 Bacterial regulatory proteins, lacI family AS54_3313 PF18801 response regulator aspartate phosphatase H, N terminal AS54_332 PF00005 ABC transporter AS54_332 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_3320 PF11798 IMS family HHH motif AS54_3320 PF11799 impB/mucB/samB family C-terminal domain AS54_3320 PF00817 impB/mucB/samB family AS54_3323 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_3323 PF00672 HAMP domain AS54_3323 PF02743 Cache domain AS54_3325 PF03313 Serine dehydratase alpha chain AS54_3326 PF03315 Serine dehydratase beta chain AS54_3326 PF01842 ACT domain AS54_3327 PF02661 Fic/DOC family AS54_3328 PF00202 Aminotransferase class-III AS54_3329 PF07503 HypF finger AS54_3329 PF01300 Telomere recombination AS54_3329 PF17788 HypF Kae1-like domain AS54_3329 PF00708 Acylphosphatase AS54_3330 PF00586 AIR synthase related protein, N-terminal domain AS54_3330 PF02769 AIR synthase related protein, C-terminal domain AS54_3331 PF00857 Isochorismatase family AS54_3332 PF01037 Lrp/AsnC ligand binding domain AS54_3333 PF13520 Amino acid permease AS54_3337 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS54_3337 PF01842 ACT domain AS54_3337 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS54_3338 PF00266 Aminotransferase class-V AS54_3341 PF04542 Sigma-70 region 2 AS54_3341 PF08281 Sigma-70, region 4 AS54_3344 PF07883 Cupin domain AS54_3345 PF01497 Periplasmic binding protein AS54_3345 PF12833 Helix-turn-helix domain AS54_3348 PF14436 Bacterial EndoU nuclease AS54_3348 PF04740 LXG domain of WXG superfamily AS54_3349 PF01804 Penicillin amidase AS54_3351 PF01476 LysM domain AS54_3351 PF01471 Putative peptidoglycan binding domain AS54_3351 PF01510 N-acetylmuramoyl-L-alanine amidase AS54_3353 PF08361 MAATS-type transcriptional repressor, C-terminal region AS54_3353 PF00440 Bacterial regulatory proteins, tetR family AS54_3354 PF07690 Major Facilitator Superfamily AS54_3361 PF14044 NETI protein AS54_3362 PF07690 Major Facilitator Superfamily AS54_3363 PF12697 Alpha/beta hydrolase family AS54_3364 PF01047 MarR family AS54_3365 PF07690 Major Facilitator Superfamily AS54_3368 PF12679 ABC-2 family transporter protein AS54_3369 PF00005 ABC transporter AS54_3369 PF13732 Domain of unknown function (DUF4162) AS54_3370 PF13396 Phospholipase_D-nuclease N-terminal AS54_3372 PF17314 Family of unknown function (DUF5360) AS54_3373 PF00893 Small Multidrug Resistance protein AS54_3374 PF00440 Bacterial regulatory proteins, tetR family AS54_3376 PF01289 Thiol-activated cytolysin AS54_3376 PF17440 Thiol-activated cytolysin beta sandwich domain AS54_3377 PF02667 Short chain fatty acid transporter AS54_3379 PF02525 Flavodoxin-like fold AS54_3383 PF14256 YwiC-like protein AS54_3385 PF00005 ABC transporter AS54_3386 PF02361 Cobalt transport protein AS54_3389 PF03737 Aldolase/RraA AS54_339 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_3390 PF03606 C4-dicarboxylate anaerobic carrier AS54_3391 PF04231 Endonuclease I AS54_3392 PF04073 Aminoacyl-tRNA editing domain AS54_3393 PF00144 Beta-lactamase AS54_3394 PF00072 Response regulator receiver domain AS54_3394 PF00196 Bacterial regulatory proteins, luxR family AS54_3395 PF03129 Anticodon binding domain AS54_3395 PF13393 Histidyl-tRNA synthetase AS54_3398 PF01638 HxlR-like helix-turn-helix AS54_3399 PF00881 Nitroreductase family AS54_340 PF01557 Fumarylacetoacetate (FAA) hydrolase family AS54_3401 PF00391 PEP-utilising enzyme, mobile domain AS54_3401 PF00224 Pyruvate kinase, barrel domain AS54_3401 PF02887 Pyruvate kinase, alpha/beta domain AS54_3405 PF00005 ABC transporter AS54_3410 PF13419 Haloacid dehalogenase-like hydrolase AS54_3411 PF07282 Putative transposase DNA-binding domain AS54_3411 PF01385 Probable transposase AS54_3411 PF12323 Helix-turn-helix domain AS54_3418 PF13344 Haloacid dehalogenase-like hydrolase AS54_3418 PF00293 NUDIX domain AS54_3419 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_342 PF07690 Major Facilitator Superfamily AS54_3420 PF00480 ROK family AS54_3421 PF07690 Major Facilitator Superfamily AS54_3422 PF12464 Maltose acetyltransferase AS54_3422 PF14602 Hexapeptide repeat of succinyl-transferase AS54_3424 PF02687 FtsX-like permease family AS54_3424 PF00005 ABC transporter AS54_3424 PF12704 MacB-like periplasmic core domain AS54_3426 PF00579 tRNA synthetases class I (W and Y) AS54_3428 PF01594 AI-2E family transporter AS54_343 PF01820 D-ala D-ala ligase N-terminus AS54_343 PF07478 D-ala D-ala ligase C-terminus AS54_3432 PF08241 Methyltransferase domain AS54_3434 PF07690 Major Facilitator Superfamily AS54_3438 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_344 PF08245 Mur ligase middle domain AS54_344 PF02875 Mur ligase family, glutamate ligase domain AS54_344 PF01225 Mur ligase family, catalytic domain AS54_3440 PF01595 Cyclin M transmembrane N-terminal domain AS54_3440 PF00571 CBS domain AS54_3440 PF03471 Transporter associated domain AS54_3441 PF13411 MerR HTH family regulatory protein AS54_3442 PF00892 EamA-like transporter family AS54_3443 PF00805 Pentapeptide repeats (8 copies) AS54_3445 PF10282 Lactonase, 7-bladed beta-propeller AS54_3446 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS54_3446 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS54_3447 PF02447 GntP family permease AS54_3448 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS54_3449 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS54_3449 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS54_345 PF00271 Helicase conserved C-terminal domain AS54_345 PF00270 DEAD/DEAH box helicase AS54_3450 PF00456 Transketolase, thiamine diphosphate binding domain AS54_3450 PF02779 Transketolase, pyrimidine binding domain AS54_3450 PF02780 Transketolase, C-terminal domain AS54_3451 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AS54_3451 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AS54_3454 PF03928 Haem-degrading AS54_346 PF01694 Rhomboid family AS54_3461 PF03960 ArsC family AS54_3462 PF00392 Bacterial regulatory proteins, gntR family AS54_3462 PF07702 UTRA domain AS54_3463 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS54_3463 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS54_347 PF03851 UV-endonuclease UvdE AS54_3470 PF02567 Phenazine biosynthesis-like protein AS54_3474 PF13302 Acetyltransferase (GNAT) domain AS54_3475 PF00501 AMP-binding enzyme AS54_3475 PF13193 AMP-binding enzyme C-terminal domain AS54_3476 PF02525 Flavodoxin-like fold AS54_3477 PF01638 HxlR-like helix-turn-helix AS54_348 PF01648 4'-phosphopantetheinyl transferase superfamily AS54_3480 PF01022 Bacterial regulatory protein, arsR family AS54_3481 PF01522 Polysaccharide deacetylase AS54_3481 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AS54_3482 PF12791 Anti-sigma factor N-terminus AS54_3483 PF04542 Sigma-70 region 2 AS54_3484 PF02517 CPBP intramembrane metalloprotease AS54_3485 PF00440 Bacterial regulatory proteins, tetR family AS54_3489 PF05656 Protein of unknown function (DUF805) AS54_3494 PF01061 ABC-2 type transporter AS54_3495 PF00005 ABC transporter AS54_3495 PF13732 Domain of unknown function (DUF4162) AS54_3498 PF03063 Prismane/CO dehydrogenase family AS54_35 PF02590 Predicted SPOUT methyltransferase AS54_350 PF00842 Alanine racemase, C-terminal domain AS54_350 PF01168 Alanine racemase, N-terminal domain AS54_3500 PF00753 Metallo-beta-lactamase superfamily AS54_3501 PF01471 Putative peptidoglycan binding domain AS54_3501 PF01183 Glycosyl hydrolases family 25 AS54_351 PF01402 Ribbon-helix-helix protein, copG family AS54_3514 PF00753 Metallo-beta-lactamase superfamily AS54_3517 PF03551 Transcriptional regulator PadR-like family AS54_3518 PF00107 Zinc-binding dehydrogenase AS54_3518 PF08240 Alcohol dehydrogenase GroES-like domain AS54_3519 PF00324 Amino acid permease AS54_352 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AS54_3520 PF07690 Major Facilitator Superfamily AS54_3525 PF02585 GlcNAc-PI de-N-acetylase AS54_3526 PF08830 Protein of unknown function (DUF1806) AS54_3527 PF03600 Citrate transporter AS54_353 PF09371 Tex-like protein N-terminal domain AS54_353 PF17674 HHH domain AS54_353 PF16921 Tex protein YqgF-like domain AS54_353 PF00575 S1 RNA binding domain AS54_3530 PF01497 Periplasmic binding protein AS54_3531 PF01032 FecCD transport family AS54_3532 PF01032 FecCD transport family AS54_3533 PF05675 Protein of unknown function (DUF817) AS54_3534 PF02567 Phenazine biosynthesis-like protein AS54_3535 PF13170 Protein of unknown function (DUF4003) AS54_3538 PF03466 LysR substrate binding domain AS54_3538 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_3539 PF00107 Zinc-binding dehydrogenase AS54_3539 PF08240 Alcohol dehydrogenase GroES-like domain AS54_354 PF17283 SprT-like zinc ribbon domain AS54_354 PF10263 SprT-like family AS54_3542 PF01713 Smr domain AS54_3542 PF00488 MutS domain V AS54_3546 PF09154 Domain of unknown function (DUF1939) AS54_3546 PF00128 Alpha amylase, catalytic domain AS54_3547 PF00797 N-acetyltransferase AS54_3548 PF01432 Peptidase family M3 AS54_3548 PF08439 Oligopeptidase F AS54_3549 PF00144 Beta-lactamase AS54_3551 PF07690 Major Facilitator Superfamily AS54_3552 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_3552 PF03466 LysR substrate binding domain AS54_3555 PF03009 Glycerophosphoryl diester phosphodiesterase family AS54_3559 PF01494 FAD binding domain AS54_3560 PF01022 Bacterial regulatory protein, arsR family AS54_3561 PF00107 Zinc-binding dehydrogenase AS54_3561 PF08240 Alcohol dehydrogenase GroES-like domain AS54_3562 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AS54_3563 PF18801 response regulator aspartate phosphatase H, N terminal AS54_3565 PF04299 Putative FMN-binding domain AS54_3566 PF04229 GrpB protein AS54_3568 PF01758 Sodium Bile acid symporter family AS54_3569 PF01565 FAD binding domain AS54_3569 PF02913 FAD linked oxidases, C-terminal domain AS54_3573 PF00132 Bacterial transferase hexapeptide (six repeats) AS54_3574 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AS54_3575 PF00535 Glycosyl transferase family 2 AS54_3576 PF00378 Enoyl-CoA hydratase/isomerase AS54_3577 PF08453 Peptidase family M9 N-terminal AS54_3577 PF01752 Collagenase AS54_3577 PF18496 Collagenase G catalytic helper subdomain AS54_3578 PF02308 MgtC family AS54_3581 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_3582 PF04294 VanW like protein AS54_3584 PF13039 Protein of unknown function (DUF3900) AS54_3584 PF13037 Domain of unknown function (DUF3898) AS54_3588 PF00313 'Cold-shock' DNA-binding domain AS54_3590 PF00258 Flavodoxin AS54_3592 PF00293 NUDIX domain AS54_3598 PF00665 Integrase core domain AS54_3598 PF13333 Integrase core domain AS54_3598 PF13276 HTH-like domain AS54_3602 PF01551 Peptidase family M23 AS54_3602 PF04225 Opacity-associated protein A LysM-like domain AS54_3604 PF01471 Putative peptidoglycan binding domain AS54_3604 PF01183 Glycosyl hydrolases family 25 AS54_3614 PF00106 short chain dehydrogenase AS54_3616 PF14698 Argininosuccinate lyase C-terminal AS54_3616 PF00206 Lyase AS54_3618 PF01156 Inosine-uridine preferring nucleoside hydrolase AS54_3619 PF00474 Sodium:solute symporter family AS54_3621 PF00171 Aldehyde dehydrogenase family AS54_3623 PF14151 YfhD-like protein AS54_3624 PF13249 Squalene-hopene cyclase N-terminal domain AS54_3624 PF13243 Squalene-hopene cyclase C-terminal domain AS54_3625 PF02681 Divergent PAP2 family AS54_3626 PF00892 EamA-like transporter family AS54_3627 PF06961 Protein of unknown function (DUF1294) AS54_3630 PF10609 NUBPL iron-transfer P-loop NTPase AS54_3632 PF02391 MoaE protein AS54_3633 PF03453 MoeA N-terminal region (domain I and II) AS54_3633 PF00994 Probable molybdopterin binding domain AS54_3633 PF03454 MoeA C-terminal region (domain IV) AS54_3634 PF00899 ThiF family AS54_3635 PF01226 Formate/nitrite transporter AS54_3636 PF04055 Radical SAM superfamily AS54_3636 PF06463 Molybdenum Cofactor Synthesis C AS54_3637 PF02634 FdhD/NarQ family AS54_3638 PF10057 Uncharacterized conserved protein (DUF2294) AS54_3639 PF07849 Protein of unknown function (DUF1641) AS54_3640 PF00384 Molybdopterin oxidoreductase AS54_3640 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS54_3640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AS54_3640 PF01568 Molydopterin dinucleotide binding domain AS54_3640 PF00037 4Fe-4S binding domain AS54_3642 PF03323 Bacillus/Clostridium GerA spore germination protein AS54_3650 PF08241 Methyltransferase domain AS54_3651 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_3652 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_3653 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_3654 PF00375 Sodium:dicarboxylate symporter family AS54_3655 PF03816 Cell envelope-related transcriptional attenuator domain AS54_3657 PF08281 Sigma-70, region 4 AS54_3657 PF04542 Sigma-70 region 2 AS54_3659 PF13732 Domain of unknown function (DUF4162) AS54_3659 PF00005 ABC transporter AS54_3661 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS54_3661 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS54_3663 PF00521 DNA gyrase/topoisomerase IV, subunit A AS54_3663 PF03989 DNA gyrase C-terminal domain, beta-propeller AS54_3664 PF01751 Toprim domain AS54_3664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_3664 PF00986 DNA gyrase B subunit, carboxyl terminus AS54_3664 PF00204 DNA gyrase B AS54_3665 PF13380 CoA binding domain AS54_3666 PF13180 PDZ domain AS54_3667 PF00486 Transcriptional regulatory protein, C terminal AS54_3667 PF00072 Response regulator receiver domain AS54_3668 PF04055 Radical SAM superfamily AS54_3669 PF13597 Anaerobic ribonucleoside-triphosphate reductase AS54_3669 PF03477 ATP cone domain AS54_3670 PF02660 Glycerol-3-phosphate acyltransferase AS54_3671 PF01521 Iron-sulphur cluster biosynthesis AS54_3672 PF03061 Thioesterase superfamily AS54_3673 PF01476 LysM domain AS54_3673 PF00704 Glycosyl hydrolases family 18 AS54_3675 PF08177 Small acid-soluble spore protein N family AS54_3676 PF13040 Fur-regulated basic protein B AS54_3677 PF01336 OB-fold nucleic acid binding domain AS54_3677 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS54_3677 PF02811 PHP domain AS54_3677 PF11490 DNA polymerase III polC-type N-terminus II AS54_3677 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS54_3677 PF00929 Exonuclease AS54_3677 PF14579 Helix-hairpin-helix motif AS54_3678 PF00578 AhpC/TSA family AS54_3680 PF03412 Peptidase C39 family AS54_3680 PF00005 ABC transporter AS54_3680 PF00664 ABC transporter transmembrane region AS54_3681 PF00694 Aconitase C-terminal domain AS54_3681 PF00330 Aconitase family (aconitate hydratase) AS54_3683 PF01522 Polysaccharide deacetylase AS54_3685 PF08179 Small acid-soluble spore protein P family AS54_3687 PF07690 Major Facilitator Superfamily AS54_3689 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS54_3689 PF02272 DHHA1 domain AS54_3689 PF01411 tRNA synthetases class II (A) AS54_3690 PF13344 Haloacid dehalogenase-like hydrolase AS54_3690 PF00293 NUDIX domain AS54_3692 PF00108 Thiolase, N-terminal domain AS54_3692 PF02803 Thiolase, C-terminal domain AS54_3693 PF00501 AMP-binding enzyme AS54_3693 PF13193 AMP-binding enzyme C-terminal domain AS54_3694 PF02632 BioY family AS54_3695 PF13193 AMP-binding enzyme C-terminal domain AS54_3695 PF00501 AMP-binding enzyme AS54_37 PF13180 PDZ domain AS54_3700 PF05532 CsbD-like AS54_3706 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_3706 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_3708 PF00989 PAS fold AS54_3708 PF13426 PAS domain AS54_3708 PF00512 His Kinase A (phospho-acceptor) domain AS54_3708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_3708 PF13188 PAS domain AS54_3709 PF01738 Dienelactone hydrolase family AS54_3710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_3711 PF00474 Sodium:solute symporter family AS54_3712 PF01645 Conserved region in glutamate synthase AS54_3713 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS54_3714 PF02559 CarD-like/TRCF domain AS54_3715 PF00491 Arginase family AS54_3716 PF01979 Amidohydrolase family AS54_3717 PF17392 Urocanase C-terminal domain AS54_3717 PF01175 Urocanase Rossmann-like domain AS54_3717 PF17391 Urocanase N-terminal domain AS54_3718 PF00221 Aromatic amino acid lyase AS54_3719 PF09021 HutP AS54_372 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AS54_3720 PF01209 ubiE/COQ5 methyltransferase family AS54_3724 PF11084 Protein of unknown function (DUF2621) AS54_3728 PF07301 Protein of unknown function (DUF1453) AS54_3729 PF02683 Cytochrome C biogenesis protein transmembrane region AS54_373 PF00814 Glycoprotease family AS54_3733 PF00005 ABC transporter AS54_3735 PF03466 LysR substrate binding domain AS54_3735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_3736 PF03788 LrgA family AS54_3737 PF04172 LrgB-like family AS54_3738 PF00293 NUDIX domain AS54_3738 PF13344 Haloacid dehalogenase-like hydrolase AS54_374 PF00583 Acetyltransferase (GNAT) family AS54_3740 PF01925 Sulfite exporter TauE/SafE AS54_3742 PF01471 Putative peptidoglycan binding domain AS54_3742 PF01510 N-acetylmuramoyl-L-alanine amidase AS54_3745 PF00664 ABC transporter transmembrane region AS54_3745 PF00005 ABC transporter AS54_3746 PF00664 ABC transporter transmembrane region AS54_3746 PF00005 ABC transporter AS54_3747 PF03672 Uncharacterised protein family (UPF0154) AS54_3748 PF10747 Sporulation inhibitor of replication protein SirA AS54_3749 PF02780 Transketolase, C-terminal domain AS54_3749 PF00456 Transketolase, thiamine diphosphate binding domain AS54_3749 PF02779 Transketolase, pyrimidine binding domain AS54_375 PF00814 Glycoprotease family AS54_3750 PF00528 Binding-protein-dependent transport system inner membrane component AS54_3751 PF00528 Binding-protein-dependent transport system inner membrane component AS54_3752 PF00005 ABC transporter AS54_3754 PF00149 Calcineurin-like phosphoesterase AS54_3754 PF02872 5'-nucleotidase, C-terminal domain AS54_3755 PF05979 Bacterial protein of unknown function (DUF896) AS54_3756 PF00239 Resolvase, N terminal domain AS54_3757 PF01726 LexA DNA binding domain AS54_3757 PF00717 Peptidase S24-like AS54_376 PF00005 ABC transporter AS54_376 PF12848 ABC transporter AS54_376 PF16326 ABC transporter C-terminal domain AS54_3760 PF03551 Transcriptional regulator PadR-like family AS54_3761 PF03951 Glutamine synthetase, beta-Grasp domain AS54_3761 PF00120 Glutamine synthetase, catalytic domain AS54_3762 PF13411 MerR HTH family regulatory protein AS54_3763 PF06838 Methionine gamma-lyase AS54_3764 PF01926 50S ribosome-binding GTPase AS54_3764 PF16360 GTP-binding GTPase Middle Region AS54_3764 PF13167 GTP-binding GTPase N-terminal AS54_3765 PF03458 UPF0126 domain AS54_3767 PF17866 AAA lid domain AS54_3767 PF00004 ATPase family associated with various cellular activities (AAA) AS54_377 PF06971 Putative DNA-binding protein N-terminus AS54_377 PF02629 CoA binding domain AS54_3770 PF17209 Hfq protein AS54_3773 PF06725 3D domain AS54_3773 PF01476 LysM domain AS54_3774 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS54_3774 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS54_3775 PF00294 pfkB family carbohydrate kinase AS54_3776 PF08220 DeoR-like helix-turn-helix domain AS54_3776 PF00455 DeoR C terminal sensor domain AS54_3777 PF00465 Iron-containing alcohol dehydrogenase AS54_3778 PF04238 Protein of unknown function (DUF420) AS54_3781 PF00324 Amino acid permease AS54_3782 PF00041 Fibronectin type III domain AS54_3782 PF00704 Glycosyl hydrolases family 18 AS54_3784 PF00149 Calcineurin-like phosphoesterase AS54_3784 PF10518 TAT (twin-arginine translocation) pathway signal sequence AS54_3785 PF01226 Formate/nitrite transporter AS54_3786 PF00216 Bacterial DNA-binding protein AS54_379 PF02517 CPBP intramembrane metalloprotease AS54_3790 PF00403 Heavy-metal-associated domain AS54_3791 PF00403 Heavy-metal-associated domain AS54_3792 PF02583 Metal-sensitive transcriptional repressor AS54_3794 PF00756 Putative esterase AS54_3795 PF00005 ABC transporter AS54_3796 PF01032 FecCD transport family AS54_3797 PF01032 FecCD transport family AS54_3798 PF01497 Periplasmic binding protein AS54_3799 PF03372 Endonuclease/Exonuclease/phosphatase family AS54_38 PF00753 Metallo-beta-lactamase superfamily AS54_380 PF00166 Chaperonin 10 Kd subunit AS54_3800 PF02805 Metal binding domain of Ada AS54_3800 PF12833 Helix-turn-helix domain AS54_3801 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AS54_3801 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AS54_3802 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AS54_3802 PF00730 HhH-GPD superfamily base excision DNA repair protein AS54_3803 PF01546 Peptidase family M20/M25/M40 AS54_3803 PF07687 Peptidase dimerisation domain AS54_3807 PF00561 alpha/beta hydrolase fold AS54_3808 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_3809 PF03707 Bacterial signalling protein N terminal repeat AS54_3809 PF00990 Diguanylate cyclase, GGDEF domain AS54_3809 PF00563 EAL domain AS54_381 PF00118 TCP-1/cpn60 chaperonin family AS54_3810 PF04101 Glycosyltransferase family 28 C-terminal domain AS54_3810 PF03033 Glycosyltransferase family 28 N-terminal domain AS54_3812 PF16363 GDP-mannose 4,6 dehydratase AS54_3813 PF02719 Polysaccharide biosynthesis protein AS54_3813 PF08485 Polysaccharide biosynthesis protein C-terminal AS54_3817 PF10787 Uncharacterised protein from bacillus cereus group AS54_3818 PF03788 LrgA family AS54_3819 PF00155 Aminotransferase class I and II AS54_3819 PF00392 Bacterial regulatory proteins, gntR family AS54_382 PF14449 Pre-toxin TG AS54_382 PF04740 LXG domain of WXG superfamily AS54_3821 PF00388 Phosphatidylinositol-specific phospholipase C, X domain AS54_3822 PF00082 Subtilase family AS54_3823 PF07486 Cell Wall Hydrolase AS54_3825 PF00884 Sulfatase AS54_3826 PF00350 Dynamin family AS54_3828 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AS54_3829 PF01119 DNA mismatch repair protein, C-terminal domain AS54_3829 PF08676 MutL C terminal dimerisation domain AS54_3830 PF05188 MutS domain II AS54_3830 PF05192 MutS domain III AS54_3830 PF05190 MutS family domain IV AS54_3830 PF00488 MutS domain V AS54_3830 PF01624 MutS domain I AS54_3831 PF10628 Outer spore coat protein E (CotE) AS54_3832 PF06133 Control of competence regulator ComK, YlbF/YmcA AS54_3833 PF00919 Uncharacterized protein family UPF0004 AS54_3833 PF04055 Radical SAM superfamily AS54_3833 PF01938 TRAM domain AS54_3834 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_3835 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AS54_3835 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AS54_3835 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AS54_3836 PF01244 Membrane dipeptidase (Peptidase family M19) AS54_3837 PF04232 Stage V sporulation protein S (SpoVS) AS54_3838 PF13277 YmdB-like protein AS54_3839 PF12072 Domain of unknown function (DUF3552) AS54_3839 PF01966 HD domain AS54_3839 PF00013 KH domain AS54_384 PF00117 Glutamine amidotransferase class-I AS54_384 PF00958 GMP synthase C terminal domain AS54_384 PF02540 NAD synthase AS54_3840 PF00154 recA bacterial DNA recombination protein AS54_3841 PF00994 Probable molybdopterin binding domain AS54_3841 PF02464 Competence-damaged protein AS54_3841 PF18146 Damage-inducible protein CinA KH domain AS54_3842 PF01066 CDP-alcohol phosphatidyltransferase AS54_3843 PF13464 Domain of unknown function (DUF4115) AS54_3844 PF11868 Protein of unknown function (DUF3388) AS54_3845 PF11588 Protein of unknown function (DUF3243) AS54_3847 PF00675 Insulinase (Peptidase family M16) AS54_3847 PF05193 Peptidase M16 inactive domain AS54_3848 PF05193 Peptidase M16 inactive domain AS54_385 PF00860 Permease family AS54_3853 PF07702 UTRA domain AS54_3853 PF00392 Bacterial regulatory proteins, gntR family AS54_3854 PF01580 FtsK/SpoIIIE family AS54_3854 PF09397 Ftsk gamma domain AS54_3854 PF17854 FtsK alpha domain AS54_3855 PF14035 YlzJ-like protein AS54_3856 PF00574 Clp protease AS54_3857 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS54_3857 PF00753 Metallo-beta-lactamase superfamily AS54_3857 PF17770 Ribonuclease J C-terminal domain AS54_3858 PF00701 Dihydrodipicolinate synthetase family AS54_3859 PF00696 Amino acid kinase family AS54_3859 PF13840 ACT domain AS54_386 PF00072 Response regulator receiver domain AS54_386 PF00486 Transcriptional regulatory protein, C terminal AS54_3860 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS54_3860 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS54_3861 PF02441 Flavoprotein AS54_3862 PF16924 Dipicolinate synthase subunit A N-terminal domain AS54_3862 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS54_3863 PF05239 PRC-barrel domain AS54_3864 PF00675 Insulinase (Peptidase family M16) AS54_3864 PF05193 Peptidase M16 inactive domain AS54_3865 PF01522 Polysaccharide deacetylase AS54_3866 PF00575 S1 RNA binding domain AS54_3866 PF00013 KH domain AS54_3866 PF01138 3' exoribonuclease family, domain 1 AS54_3866 PF03725 3' exoribonuclease family, domain 2 AS54_3866 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AS54_3867 PF00312 Ribosomal protein S15 AS54_3868 PF06574 FAD synthetase AS54_3868 PF01687 Riboflavin kinase AS54_3869 PF01509 TruB family pseudouridylate synthase (N terminal domain) AS54_3869 PF16198 tRNA pseudouridylate synthase B C-terminal domain AS54_387 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_387 PF00989 PAS fold AS54_387 PF00512 His Kinase A (phospho-acceptor) domain AS54_387 PF16736 Single Cache-like AS54_3870 PF02033 Ribosome-binding factor A AS54_3871 PF04456 Protein of unknown function (DUF503) AS54_3872 PF00009 Elongation factor Tu GTP binding domain AS54_3872 PF04760 Translation initiation factor IF-2, N-terminal region AS54_3872 PF11987 Translation-initiation factor 2 AS54_3873 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AS54_3874 PF04296 Protein of unknown function (DUF448) AS54_3875 PF00575 S1 RNA binding domain AS54_3875 PF13184 NusA-like KH domain AS54_3875 PF08529 NusA N-terminal domain AS54_3876 PF17384 RimP C-terminal SH3 domain AS54_3876 PF02576 RimP N-terminal domain AS54_3877 PF00929 Exonuclease AS54_3877 PF02811 PHP domain AS54_3877 PF14579 Helix-hairpin-helix motif AS54_3877 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS54_3877 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS54_3877 PF11490 DNA polymerase III polC-type N-terminus II AS54_3877 PF14480 DNA polymerase III polC-type N-terminus I AS54_3878 PF01348 Type II intron maturase AS54_3878 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AS54_3880 PF02811 PHP domain AS54_3880 PF14480 DNA polymerase III polC-type N-terminus I AS54_3880 PF11490 DNA polymerase III polC-type N-terminus II AS54_3880 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS54_3880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS54_3880 PF14579 Helix-hairpin-helix motif AS54_3880 PF00929 Exonuclease AS54_3881 PF03129 Anticodon binding domain AS54_3881 PF04073 Aminoacyl-tRNA editing domain AS54_3881 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS54_3882 PF17820 PDZ domain AS54_3882 PF02163 Peptidase family M50 AS54_3883 PF13288 DXP reductoisomerase C-terminal domain AS54_3883 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AS54_3883 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AS54_3885 PF01255 Putative undecaprenyl diphosphate synthase AS54_3886 PF01765 Ribosome recycling factor AS54_3887 PF00696 Amino acid kinase family AS54_3888 PF00889 Elongation factor TS AS54_3889 PF00318 Ribosomal protein S2 AS54_3890 PF06018 CodY GAF-like domain AS54_3890 PF08222 CodY helix-turn-helix domain AS54_3891 PF07724 AAA domain (Cdc48 subfamily) AS54_3891 PF10431 C-terminal, D2-small domain, of ClpB protein AS54_3891 PF00004 ATPase family associated with various cellular activities (AAA) AS54_3892 PF00227 Proteasome subunit AS54_3893 PF00589 Phage integrase family AS54_3893 PF02899 Phage integrase, N-terminal SAM-like domain AS54_3894 PF01134 Glucose inhibited division protein A AS54_3895 PF01751 Toprim domain AS54_3895 PF01396 Topoisomerase DNA binding C4 zinc finger AS54_3895 PF01131 DNA topoisomerase AS54_3896 PF02481 DNA recombination-mediator protein A AS54_3897 PF00549 CoA-ligase AS54_3897 PF02629 CoA binding domain AS54_3898 PF08442 ATP-grasp domain AS54_3898 PF00549 CoA-ligase AS54_3899 PF01351 Ribonuclease HII AS54_39 PF09648 YycH protein AS54_3900 PF01926 50S ribosome-binding GTPase AS54_3901 PF10502 Signal peptidase, peptidase S26 AS54_3902 PF01245 Ribosomal protein L19 AS54_3903 PF01746 tRNA (Guanine-1)-methyltransferase AS54_3904 PF05239 PRC-barrel domain AS54_3904 PF01782 RimM N-terminal domain AS54_3906 PF00886 Ribosomal protein S16 AS54_3907 PF00448 SRP54-type protein, GTPase domain AS54_3907 PF02881 SRP54-type protein, helical bundle domain AS54_3907 PF02978 Signal peptide binding domain AS54_3908 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AS54_3909 PF02881 SRP54-type protein, helical bundle domain AS54_3909 PF00448 SRP54-type protein, GTPase domain AS54_3910 PF06470 SMC proteins Flexible Hinge Domain AS54_3910 PF02463 RecF/RecN/SMC N terminal domain AS54_3911 PF14622 Ribonuclease-III-like AS54_3911 PF00035 Double-stranded RNA binding motif AS54_3912 PF00550 Phosphopantetheine attachment site AS54_3914 PF00698 Acyl transferase domain AS54_3915 PF02504 Fatty acid synthesis protein AS54_3916 PF03061 Thioesterase superfamily AS54_3917 PF00270 DEAD/DEAH box helicase AS54_3917 PF17191 RecG wedge domain AS54_3917 PF00271 Helicase conserved C-terminal domain AS54_3918 PF02734 DAK2 domain AS54_3918 PF13684 Dihydroxyacetone kinase family AS54_3919 PF03780 Asp23 family, cell envelope-related function AS54_3920 PF00830 Ribosomal L28 family AS54_3921 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AS54_3921 PF04263 Thiamin pyrophosphokinase, catalytic domain AS54_3922 PF00834 Ribulose-phosphate 3 epimerase family AS54_3923 PF03193 RsgA GTPase AS54_3923 PF16745 RsgA N-terminal domain AS54_3924 PF03793 PASTA domain AS54_3924 PF00069 Protein kinase domain AS54_3926 PF04055 Radical SAM superfamily AS54_3927 PF01029 NusB family AS54_3927 PF01189 16S rRNA methyltransferase RsmB/F AS54_3928 PF00551 Formyl transferase AS54_3928 PF02911 Formyl transferase, C-terminal domain AS54_3929 PF01327 Polypeptide deformylase AS54_393 PF01323 DSBA-like thioredoxin domain AS54_3930 PF00271 Helicase conserved C-terminal domain AS54_3930 PF17764 3′ DNA-binding domain (3′BD) AS54_3930 PF18074 Primosomal protein N C-terminal domain AS54_3930 PF04851 Type III restriction enzyme, res subunit AS54_3930 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AS54_3931 PF04127 DNA / pantothenate metabolism flavoprotein AS54_3931 PF02441 Flavoprotein AS54_3932 PF01192 RNA polymerase Rpb6 AS54_3933 PF00625 Guanylate kinase AS54_3934 PF04025 Domain of unknown function (DUF370) AS54_3935 PF03755 YicC-like family, N-terminal region AS54_3935 PF08340 Domain of unknown function (DUF1732) AS54_3936 PF00689 Cation transporting ATPase, C-terminus AS54_3936 PF00690 Cation transporter/ATPase, N-terminus AS54_3938 PF00557 Metallopeptidase family M24 AS54_3938 PF01321 Creatinase/Prolidase N-terminal domain AS54_3945 PF00156 Phosphoribosyl transferase domain AS54_3946 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AS54_3947 PF01180 Dihydroorotate dehydrogenase AS54_3948 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AS54_3948 PF00175 Oxidoreductase NAD-binding domain AS54_3949 PF02142 MGS-like domain AS54_3949 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS54_3949 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AS54_3950 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AS54_3950 PF00117 Glutamine amidotransferase class-I AS54_3951 PF01979 Amidohydrolase family AS54_3952 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AS54_3952 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AS54_3953 PF00860 Permease family AS54_3954 PF00156 Phosphoribosyl transferase domain AS54_3955 PF01479 S4 domain AS54_3955 PF00849 RNA pseudouridylate synthase AS54_3956 PF01252 Signal peptidase (SPase) II AS54_3958 PF06827 Zinc finger found in FPG and IleRS AS54_3958 PF00133 tRNA synthetases class I (I, L, M and V) AS54_3958 PF08264 Anticodon-binding domain of tRNA AS54_3959 PF05103 DivIVA protein AS54_3960 PF01479 S4 domain AS54_3960 PF17774 Putative RNA-binding domain in YlmH AS54_3961 PF02325 YGGT family AS54_3962 PF04472 Cell division protein SepF AS54_3963 PF01168 Alanine racemase, N-terminal domain AS54_3965 PF05239 PRC-barrel domain AS54_3966 PF04542 Sigma-70 region 2 AS54_3966 PF04545 Sigma-70, region 4 AS54_3966 PF04539 Sigma-70 region 3 AS54_3967 PF04545 Sigma-70, region 4 AS54_3967 PF04542 Sigma-70 region 2 AS54_3968 PF03419 Sporulation factor SpoIIGA AS54_3969 PF12327 FtsZ family, C-terminal domain AS54_3969 PF00091 Tubulin/FtsZ family, GTPase domain AS54_3970 PF02491 SHS2 domain inserted in FTSA AS54_3971 PF08478 POTRA domain, FtsQ-type AS54_3971 PF03799 Cell division protein FtsQ AS54_3972 PF01565 FAD binding domain AS54_3972 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AS54_3973 PF04101 Glycosyltransferase family 28 C-terminal domain AS54_3973 PF03033 Glycosyltransferase family 28 N-terminal domain AS54_3974 PF01098 Cell cycle protein AS54_3975 PF08245 Mur ligase middle domain AS54_3975 PF02875 Mur ligase family, glutamate ligase domain AS54_3976 PF00953 Glycosyl transferase family 4 AS54_3976 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AS54_3977 PF08245 Mur ligase middle domain AS54_3977 PF02875 Mur ligase family, glutamate ligase domain AS54_3977 PF01225 Mur ligase family, catalytic domain AS54_3978 PF03717 Penicillin-binding Protein dimerisation domain AS54_3978 PF00905 Penicillin binding protein transpeptidase domain AS54_3978 PF03793 PASTA domain AS54_3980 PF04977 Septum formation initiator AS54_3981 PF01795 MraW methylase family AS54_3982 PF10079 Bacillithiol biosynthesis BshC AS54_3983 PF02558 Ketopantoate reductase PanE/ApbA AS54_3983 PF08546 Ketopantoate reductase PanE/ApbA C terminal AS54_3984 PF00583 Acetyltransferase (GNAT) family AS54_3986 PF01783 Ribosomal L32p protein family AS54_3987 PF02620 Large ribosomal RNA subunit accumulation protein YceD AS54_3988 PF05636 HIGH Nucleotidyl Transferase AS54_3989 PF05362 Lon protease (S16) C-terminal proteolytic domain AS54_3989 PF13180 PDZ domain AS54_3990 PF01734 Patatin-like phospholipase AS54_3991 PF01467 Cytidylyltransferase-like AS54_3992 PF07670 Nucleoside recognition AS54_3995 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AS54_3996 PF06133 Control of competence regulator ComK, YlbF/YmcA AS54_3997 PF00300 Histidine phosphatase superfamily (branch 1) AS54_3998 PF14003 YlbE-like protein AS54_3999 PF14071 Putative coat protein AS54_4 PF03061 Thioesterase superfamily AS54_40 PF07435 YycH protein AS54_4000 PF00188 Cysteine-rich secretory protein family AS54_4000 PF14504 CAP-associated N-terminal AS54_4001 PF08868 YugN-like family AS54_4002 PF00795 Carbon-nitrogen hydrolase AS54_4003 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AS54_4004 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AS54_4005 PF00510 Cytochrome c oxidase subunit III AS54_4006 PF00115 Cytochrome C and Quinol oxidase polypeptide I AS54_4007 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AS54_4007 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AS54_4007 PF00034 Cytochrome c AS54_4008 PF01040 UbiA prenyltransferase family AS54_4009 PF02628 Cytochrome oxidase assembly protein AS54_4010 PF02436 Conserved carboxylase domain AS54_4010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS54_4010 PF00364 Biotin-requiring enzyme AS54_4010 PF00289 Biotin carboxylase, N-terminal domain AS54_4010 PF00682 HMGL-like AS54_4010 PF02785 Biotin carboxylase C-terminal domain AS54_4011 PF01098 Cell cycle protein AS54_4012 PF07408 Protein of unknown function (DUF1507) AS54_4014 PF13638 PIN domain AS54_4014 PF02562 PhoH-like protein AS54_4016 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AS54_4018 PF14036 YlaH-like protein AS54_4021 PF00459 Inositol monophosphatase family AS54_4023 PF06335 Protein of unknown function (DUF1054) AS54_4024 PF05256 Uncharacterised protein family (UPF0223) AS54_4025 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AS54_4025 PF01276 Orn/Lys/Arg decarboxylase, major domain AS54_403 PF02673 Bacitracin resistance protein BacA AS54_4033 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS54_4033 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_4034 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS54_4034 PF02817 e3 binding domain AS54_4034 PF00364 Biotin-requiring enzyme AS54_4035 PF02780 Transketolase, C-terminal domain AS54_4035 PF02779 Transketolase, pyrimidine binding domain AS54_4036 PF00676 Dehydrogenase E1 component AS54_4038 PF01327 Polypeptide deformylase AS54_4041 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS54_4041 PF17770 Ribonuclease J C-terminal domain AS54_4041 PF00753 Metallo-beta-lactamase superfamily AS54_4042 PF02254 TrkA-N domain AS54_4042 PF02080 TrkA-C domain AS54_4044 PF01546 Peptidase family M20/M25/M40 AS54_4044 PF07687 Peptidase dimerisation domain AS54_4045 PF14602 Hexapeptide repeat of succinyl-transferase AS54_4045 PF00132 Bacterial transferase hexapeptide (six repeats) AS54_4045 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AS54_4046 PF03466 LysR substrate binding domain AS54_4046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_4049 PF04308 Ribonuclease H-like AS54_405 PF00005 ABC transporter AS54_4051 PF08796 Protein of unknown function (DUF1797) AS54_4054 PF10388 EAL-domain associated signalling protein domain AS54_4054 PF00563 EAL domain AS54_4056 PF00149 Calcineurin-like phosphoesterase AS54_4056 PF10518 TAT (twin-arginine translocation) pathway signal sequence AS54_4058 PF17941 Polyphosphate kinase C-terminal domain 1 AS54_4058 PF13089 Polyphosphate kinase N-terminal domain AS54_4058 PF02503 Polyphosphate kinase middle domain AS54_4058 PF13090 Polyphosphate kinase C-terminal domain 2 AS54_4059 PF02541 Ppx/GppA phosphatase family AS54_406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_406 PF00512 His Kinase A (phospho-acceptor) domain AS54_4060 PF14177 YkyB-like protein AS54_4065 PF07690 Major Facilitator Superfamily AS54_4067 PF01717 Cobalamin-independent synthase, Catalytic domain AS54_4067 PF08267 Cobalamin-independent synthase, N-terminal domain AS54_4069 PF14040 Deoxyribonuclease NucA/NucB AS54_407 PF00486 Transcriptional regulatory protein, C terminal AS54_407 PF00072 Response regulator receiver domain AS54_4071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4071 PF00512 His Kinase A (phospho-acceptor) domain AS54_4073 PF00155 Aminotransferase class I and II AS54_4074 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS54_4074 PF00356 Bacterial regulatory proteins, lacI family AS54_4075 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4076 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4077 PF13416 Bacterial extracellular solute-binding protein AS54_4078 PF16657 Maltogenic Amylase, C-terminal domain AS54_4078 PF02903 Alpha amylase, N-terminal ig-like domain AS54_4078 PF00128 Alpha amylase, catalytic domain AS54_4079 PF16657 Maltogenic Amylase, C-terminal domain AS54_4079 PF00128 Alpha amylase, catalytic domain AS54_4080 PF00005 ABC transporter AS54_4080 PF03459 TOBE domain AS54_4080 PF17912 MalK OB fold domain AS54_4089 PF02803 Thiolase, C-terminal domain AS54_4089 PF00108 Thiolase, N-terminal domain AS54_4090 PF00293 NUDIX domain AS54_4095 PF03551 Transcriptional regulator PadR-like family AS54_4099 PF01636 Phosphotransferase enzyme family AS54_41 PF13426 PAS domain AS54_41 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_41 PF00672 HAMP domain AS54_41 PF00512 His Kinase A (phospho-acceptor) domain AS54_4100 PF00795 Carbon-nitrogen hydrolase AS54_4101 PF00155 Aminotransferase class I and II AS54_4102 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AS54_4102 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AS54_4104 PF00596 Class II Aldolase and Adducin N-terminal domain AS54_4105 PF03079 ARD/ARD' family AS54_4108 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS54_4108 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS54_4109 PF00990 Diguanylate cyclase, GGDEF domain AS54_4110 PF00881 Nitroreductase family AS54_4113 PF02896 PEP-utilising enzyme, TIM barrel domain AS54_4113 PF00391 PEP-utilising enzyme, mobile domain AS54_4113 PF05524 PEP-utilising enzyme, N-terminal AS54_4114 PF00381 PTS HPr component phosphorylation site AS54_4115 PF00367 phosphotransferase system, EIIB AS54_4115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS54_4115 PF02378 Phosphotransferase system, EIIC AS54_4116 PF03123 CAT RNA binding domain AS54_4116 PF00874 PRD domain AS54_4119 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AS54_412 PF00892 EamA-like transporter family AS54_4120 PF01979 Amidohydrolase family AS54_4122 PF04079 Segregation and condensation complex subunit ScpB AS54_4123 PF02616 Segregation and condensation protein ScpA AS54_4125 PF03745 Domain of unknown function (DUF309) AS54_4126 PF00583 Acetyltransferase (GNAT) family AS54_4127 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AS54_4128 PF06207 Protein of unknown function (DUF1002) AS54_4130 PF03323 Bacillus/Clostridium GerA spore germination protein AS54_4131 PF14097 Stage V sporulation protein AE1 AS54_4132 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS54_4133 PF07451 Stage V sporulation protein AD (SpoVAD) AS54_4134 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS54_4135 PF13782 Stage V sporulation protein AB AS54_4136 PF12164 Stage V sporulation protein AA AS54_4138 PF00209 Sodium:neurotransmitter symporter family AS54_4139 PF04542 Sigma-70 region 2 AS54_4139 PF04545 Sigma-70, region 4 AS54_4139 PF04539 Sigma-70 region 3 AS54_4140 PF13581 Histidine kinase-like ATPase domain AS54_4141 PF01740 STAS domain AS54_4142 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_4142 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_4143 PF00392 Bacterial regulatory proteins, gntR family AS54_4144 PF00005 ABC transporter AS54_4147 PF01047 MarR family AS54_4149 PF00860 Permease family AS54_4150 PF01544 CorA-like Mg2+ transporter protein AS54_4151 PF02885 Glycosyl transferase family, helical bundle domain AS54_4151 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AS54_4151 PF00591 Glycosyl transferase family, a/b domain AS54_4152 PF01048 Phosphorylase superfamily AS54_4153 PF01676 Metalloenzyme superfamily AS54_4155 PF00589 Phage integrase family AS54_4155 PF02899 Phage integrase, N-terminal SAM-like domain AS54_4156 PF14004 Protein of unknown function (DUF4227) AS54_4157 PF01475 Ferric uptake regulator family AS54_4158 PF01944 Stage II sporulation protein M AS54_4160 PF00293 NUDIX domain AS54_4161 PF13072 Mother cell inhibitor of FtsZ AS54_4162 PF00248 Aldo/keto reductase family AS54_4163 PF00248 Aldo/keto reductase family AS54_4164 PF04229 GrpB protein AS54_4164 PF13673 Acetyltransferase (GNAT) domain AS54_4166 PF00565 Staphylococcal nuclease homologue AS54_4166 PF00149 Calcineurin-like phosphoesterase AS54_4166 PF00746 LPXTG cell wall anchor motif AS54_4166 PF02872 5'-nucleotidase, C-terminal domain AS54_4168 PF12146 Serine aminopeptidase, S33 AS54_4169 PF13726 Na+-H+ antiporter family AS54_4169 PF03553 Na+/H+ antiporter family AS54_4170 PF00356 Bacterial regulatory proteins, lacI family AS54_4171 PF00583 Acetyltransferase (GNAT) family AS54_4172 PF12146 Serine aminopeptidase, S33 AS54_4173 PF10827 Protein of unknown function (DUF2552) AS54_4175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS54_4175 PF01872 RibD C-terminal domain AS54_4176 PF00677 Lumazine binding domain AS54_4177 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AS54_4177 PF00925 GTP cyclohydrolase II AS54_4178 PF00885 6,7-dimethyl-8-ribityllumazine synthase AS54_418 PF00731 AIR carboxylase AS54_4180 PF04055 Radical SAM superfamily AS54_4180 PF06968 Biotin and Thiamin Synthesis associated domain AS54_4181 PF13847 Methyltransferase domain AS54_4182 PF12697 Alpha/beta hydrolase family AS54_4182 PF08241 Methyltransferase domain AS54_4183 PF00155 Aminotransferase class I and II AS54_4185 PF00202 Aminotransferase class-III AS54_4188 PF00149 Calcineurin-like phosphoesterase AS54_4188 PF02872 5'-nucleotidase, C-terminal domain AS54_419 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AS54_419 PF02222 ATP-grasp domain AS54_4190 PF01037 Lrp/AsnC ligand binding domain AS54_4190 PF13404 AsnC-type helix-turn-helix domain AS54_4193 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AS54_4193 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AS54_4194 PF00202 Aminotransferase class-III AS54_4195 PF00696 Amino acid kinase family AS54_4196 PF01960 ArgJ family AS54_4197 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS54_4197 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS54_4199 PF00106 short chain dehydrogenase AS54_42 PF00072 Response regulator receiver domain AS54_42 PF00486 Transcriptional regulatory protein, C terminal AS54_420 PF00206 Lyase AS54_420 PF10397 Adenylosuccinate lyase C-terminus AS54_4200 PF00753 Metallo-beta-lactamase superfamily AS54_4201 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS54_4201 PF03807 NADP oxidoreductase coenzyme F420-dependent AS54_4202 PF03313 Serine dehydratase alpha chain AS54_4203 PF01842 ACT domain AS54_4203 PF03315 Serine dehydratase beta chain AS54_4204 PF12706 Beta-lactamase superfamily domain AS54_4204 PF00753 Metallo-beta-lactamase superfamily AS54_4206 PF00817 impB/mucB/samB family AS54_4206 PF11799 impB/mucB/samB family C-terminal domain AS54_4206 PF11798 IMS family HHH motif AS54_4207 PF01546 Peptidase family M20/M25/M40 AS54_4207 PF07687 Peptidase dimerisation domain AS54_4208 PF13302 Acetyltransferase (GNAT) domain AS54_421 PF01259 SAICAR synthetase AS54_4210 PF03734 L,D-transpeptidase catalytic domain AS54_4211 PF06081 Aromatic acid exporter family member 1 AS54_4211 PF11728 Putative aromatic acid exporter C-terminal domain AS54_4212 PF00005 ABC transporter AS54_4213 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4214 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS54_4215 PF06491 Disulphide isomerase AS54_4216 PF11208 Protein of unknown function (DUF2992) AS54_4217 PF00293 NUDIX domain AS54_4217 PF09297 NADH pyrophosphatase zinc ribbon domain AS54_4218 PF01098 Cell cycle protein AS54_4219 PF02817 e3 binding domain AS54_4219 PF00364 Biotin-requiring enzyme AS54_4219 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS54_422 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AS54_4220 PF02779 Transketolase, pyrimidine binding domain AS54_4220 PF02780 Transketolase, C-terminal domain AS54_4221 PF00676 Dehydrogenase E1 component AS54_4222 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_4222 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS54_4223 PF00871 Acetokinase family AS54_4224 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AS54_4224 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS54_4225 PF01515 Phosphate acetyl/butaryl transferase AS54_4226 PF00989 PAS fold AS54_4226 PF02954 Bacterial regulatory protein, Fis family AS54_4226 PF00158 Sigma-54 interaction domain AS54_4228 PF03009 Glycerophosphoryl diester phosphodiesterase family AS54_4229 PF14174 YycC-like protein AS54_4231 PF08769 Sporulation initiation factor Spo0A C terminal AS54_4231 PF00072 Response regulator receiver domain AS54_4232 PF05580 SpoIVB peptidase S55 AS54_4232 PF17820 PDZ domain AS54_4233 PF13476 AAA domain AS54_4234 PF02863 Arginine repressor, C-terminal domain AS54_4234 PF01316 Arginine repressor, DNA binding domain AS54_4235 PF01728 FtsJ-like methyltransferase AS54_4235 PF01479 S4 domain AS54_4236 PF02780 Transketolase, C-terminal domain AS54_4236 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AS54_4236 PF02779 Transketolase, pyrimidine binding domain AS54_4237 PF00348 Polyprenyl synthetase AS54_4238 PF02609 Exonuclease VII small subunit AS54_4239 PF02601 Exonuclease VII, large subunit AS54_4239 PF13742 OB-fold nucleic acid binding domain AS54_424 PF02769 AIR synthase related protein, C-terminal domain AS54_424 PF00586 AIR synthase related protein, N-terminal domain AS54_424 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AS54_4240 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AS54_4240 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AS54_4241 PF01029 NusB family AS54_4242 PF03780 Asp23 family, cell envelope-related function AS54_4243 PF00289 Biotin carboxylase, N-terminal domain AS54_4243 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS54_4243 PF02785 Biotin carboxylase C-terminal domain AS54_4244 PF00364 Biotin-requiring enzyme AS54_4246 PF12685 SpoIIIAH-like protein AS54_4248 PF09581 Stage III sporulation protein AF (Spore_III_AF) AS54_4249 PF09546 Stage III sporulation protein AE (spore_III_AE) AS54_425 PF00156 Phosphoribosyl transferase domain AS54_4250 PF06686 Stage III sporulation protein AC/AD protein family AS54_4251 PF06686 Stage III sporulation protein AC/AD protein family AS54_4252 PF09548 Stage III sporulation protein AB (spore_III_AB) AS54_4257 PF09285 Elongation factor P, C-terminal AS54_4257 PF01132 Elongation factor P (EF-P) OB domain AS54_4257 PF08207 Elongation factor P (EF-P) KOW-like domain AS54_4258 PF01321 Creatinase/Prolidase N-terminal domain AS54_4258 PF00557 Metallopeptidase family M24 AS54_4259 PF01220 Dehydroquinase class II AS54_426 PF00586 AIR synthase related protein, N-terminal domain AS54_426 PF02769 AIR synthase related protein, C-terminal domain AS54_4260 PF11085 Conserved membrane protein YqhR AS54_4261 PF07136 Protein of unknown function (DUF1385) AS54_4262 PF13419 Haloacid dehalogenase-like hydrolase AS54_4264 PF02742 Iron dependent repressor, metal binding and dimerisation domain AS54_4264 PF01325 Iron dependent repressor, N-terminal DNA binding domain AS54_4266 PF03551 Transcriptional regulator PadR-like family AS54_4269 PF03099 Biotin/lipoate A/B protein ligase family AS54_427 PF00551 Formyl transferase AS54_4270 PF00581 Rhodanese-like domain AS54_4271 PF00356 Bacterial regulatory proteins, lacI family AS54_4271 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS54_4273 PF00893 Small Multidrug Resistance protein AS54_4274 PF00893 Small Multidrug Resistance protein AS54_428 PF01808 AICARFT/IMPCHase bienzyme AS54_428 PF02142 MGS-like domain AS54_4281 PF00005 ABC transporter AS54_4282 PF00392 Bacterial regulatory proteins, gntR family AS54_4285 PF02347 Glycine cleavage system P-protein AS54_4286 PF02347 Glycine cleavage system P-protein AS54_4287 PF08669 Glycine cleavage T-protein C-terminal barrel domain AS54_4287 PF01571 Aminomethyltransferase folate-binding domain AS54_4288 PF00176 SNF2 family N-terminal domain AS54_4288 PF00271 Helicase conserved C-terminal domain AS54_4289 PF11079 Bacterial protein YqhG of unknown function AS54_429 PF02843 Phosphoribosylglycinamide synthetase, C domain AS54_429 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AS54_429 PF02844 Phosphoribosylglycinamide synthetase, N domain AS54_4293 PF14038 YqzE-like protein AS54_4294 PF01202 Shikimate kinase AS54_4299 PF07963 Prokaryotic N-terminal methylation motif AS54_4301 PF00482 Type II secretion system (T2SS), protein F AS54_4302 PF00437 Type II/IV secretion system protein AS54_4304 PF11117 Protein of unknown function (DUF2626) AS54_4305 PF00375 Sodium:dicarboxylate symporter family AS54_4311 PF03033 Glycosyltransferase family 28 N-terminal domain AS54_4311 PF04101 Glycosyltransferase family 28 C-terminal domain AS54_4312 PF00809 Pterin binding enzyme AS54_4312 PF02310 B12 binding domain AS54_4312 PF02607 B12 binding domain AS54_4312 PF02965 Vitamin B12 dependent methionine synthase, activation domain AS54_4312 PF02574 Homocysteine S-methyltransferase AS54_4313 PF02219 Methylenetetrahydrofolate reductase AS54_4313 PF02574 Homocysteine S-methyltransferase AS54_4314 PF01053 Cys/Met metabolism PLP-dependent enzyme AS54_4315 PF01053 Cys/Met metabolism PLP-dependent enzyme AS54_4316 PF01022 Bacterial regulatory protein, arsR family AS54_4318 PF00753 Metallo-beta-lactamase superfamily AS54_4319 PF10958 Protein of unknown function (DUF2759) AS54_4320 PF00480 ROK family AS54_4321 PF06014 Bacterial protein of unknown function (DUF910) AS54_4322 PF01812 5-formyltetrahydrofolate cyclo-ligase family AS54_4323 PF00471 Ribosomal protein L33 AS54_4324 PF00483 Nucleotidyl transferase AS54_4325 PF01895 PhoU domain AS54_4326 PF00005 ABC transporter AS54_4327 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4328 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4329 PF12849 PBP superfamily domain AS54_433 PF01884 PcrB family AS54_4331 PF07690 Major Facilitator Superfamily AS54_4332 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS54_4332 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS54_4336 PF04551 GcpE protein AS54_4337 PF01475 Ferric uptake regulator family AS54_4338 PF00950 ABC 3 transport family AS54_4339 PF00005 ABC transporter AS54_434 PF13361 UvrD-like helicase C-terminal domain AS54_434 PF00580 UvrD/REP helicase N-terminal domain AS54_4340 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_4340 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_4341 PF11116 Protein of unknown function (DUF2624) AS54_4342 PF01261 Xylose isomerase-like TIM barrel AS54_4343 PF00270 DEAD/DEAH box helicase AS54_4343 PF00271 Helicase conserved C-terminal domain AS54_4345 PF02401 LytB protein AS54_4346 PF01784 NIF3 (NGG1p interacting factor 3) AS54_4347 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AS54_4348 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS54_4349 PF04545 Sigma-70, region 4 AS54_4349 PF03979 Sigma-70 factor, region 1.1 AS54_4349 PF04539 Sigma-70 region 3 AS54_4349 PF04542 Sigma-70 region 2 AS54_4349 PF00140 Sigma-70 factor, region 1.2 AS54_435 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AS54_435 PF12826 Helix-hairpin-helix motif AS54_435 PF00533 BRCA1 C Terminus (BRCT) domain AS54_435 PF01653 NAD-dependent DNA ligase adenylation domain AS54_435 PF03120 NAD-dependent DNA ligase OB-fold domain AS54_4350 PF10410 DnaB-helicase binding domain of primase AS54_4350 PF08275 DNA primase catalytic core, N-terminal domain AS54_4350 PF01807 CHC2 zinc finger AS54_4351 PF03618 Kinase/pyrophosphorylase AS54_4352 PF08279 HTH domain AS54_4352 PF00571 CBS domain AS54_4353 PF11967 Recombination protein O N terminal AS54_4353 PF02565 Recombination protein O C terminal AS54_4355 PF01926 50S ribosome-binding GTPase AS54_4355 PF07650 KH domain AS54_4356 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS54_4357 PF01219 Prokaryotic diacylglycerol kinase AS54_4358 PF02130 Uncharacterized protein family UPF0054 AS54_4359 PF01966 HD domain AS54_4359 PF07698 7TM receptor with intracellular HD hydrolase AS54_4359 PF07697 7TM-HD extracellular AS54_436 PF07537 CamS sex pheromone cAM373 precursor AS54_4360 PF02562 PhoH-like protein AS54_4361 PF06898 Putative stage IV sporulation protein YqfD AS54_4362 PF07873 YabP family AS54_4363 PF09424 Yqey-like protein AS54_4364 PF01165 Ribosomal protein S21 AS54_4365 PF00919 Uncharacterized protein family UPF0004 AS54_4365 PF01938 TRAM domain AS54_4365 PF04055 Radical SAM superfamily AS54_4366 PF04452 RNA methyltransferase AS54_4368 PF00684 DnaJ central domain AS54_4368 PF00226 DnaJ domain AS54_4368 PF01556 DnaJ C terminal domain AS54_4369 PF00012 Hsp70 protein AS54_437 PF01925 Sulfite exporter TauE/SafE AS54_4370 PF01025 GrpE AS54_4371 PF01628 HrcA protein C terminal domain AS54_4372 PF04055 Radical SAM superfamily AS54_4372 PF06969 HemN C-terminal domain AS54_4373 PF01638 HxlR-like helix-turn-helix AS54_4374 PF00679 Elongation factor G C-terminus AS54_4374 PF00009 Elongation factor Tu GTP binding domain AS54_4374 PF03144 Elongation factor Tu domain 2 AS54_4374 PF06421 GTP-binding protein LepA C-terminus AS54_4376 PF03418 Germination protease AS54_4377 PF01649 Ribosomal protein S20 AS54_4378 PF06144 DNA polymerase III, delta subunit AS54_4379 PF14141 YqzM-like protein AS54_438 PF00171 Aldehyde dehydrogenase family AS54_4380 PF03772 Competence protein AS54_4380 PF00753 Metallo-beta-lactamase superfamily AS54_4380 PF13567 Domain of unknown function (DUF4131) AS54_4381 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS54_4382 PF10531 SLBB domain AS54_4383 PF03807 NADP oxidoreductase coenzyme F420-dependent AS54_4383 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS54_4384 PF13649 Methyltransferase domain AS54_4386 PF01966 HD domain AS54_4387 PF01467 Cytidylyltransferase-like AS54_4388 PF01985 CRS1 / YhbY (CRM) domain AS54_4389 PF01488 Shikimate / quinate 5-dehydrogenase AS54_4389 PF08501 Shikimate dehydrogenase substrate binding domain AS54_4389 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AS54_4390 PF01926 50S ribosome-binding GTPase AS54_4393 PF02666 Phosphatidylserine decarboxylase AS54_4394 PF04545 Sigma-70, region 4 AS54_4394 PF04542 Sigma-70 region 2 AS54_4396 PF16244 Domain of unknown function (DUF4901) AS54_4397 PF00471 Ribosomal protein L33 AS54_4398 PF00881 Nitroreductase family AS54_4399 PF04607 Region found in RelA / SpoT proteins AS54_440 PF00857 Isochorismatase family AS54_4401 PF00245 Alkaline phosphatase AS54_4403 PF00561 alpha/beta hydrolase fold AS54_4403 PF08386 TAP-like protein AS54_441 PF09383 NIL domain AS54_441 PF00005 ABC transporter AS54_4410 PF13860 FlgD Ig-like domain AS54_4410 PF05922 Peptidase inhibitor I9 AS54_4410 PF00082 Subtilase family AS54_4410 PF02225 PA domain AS54_4411 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AS54_4413 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_4414 PF07681 DoxX AS54_442 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4420 PF00005 ABC transporter AS54_4421 PF01032 FecCD transport family AS54_4422 PF01497 Periplasmic binding protein AS54_4423 PF14143 YrhC-like protein AS54_4424 PF00171 Aldehyde dehydrogenase family AS54_4424 PF00465 Iron-containing alcohol dehydrogenase AS54_4425 PF01053 Cys/Met metabolism PLP-dependent enzyme AS54_4426 PF00291 Pyridoxal-phosphate dependent enzyme AS54_4427 PF01048 Phosphorylase superfamily AS54_4428 PF08241 Methyltransferase domain AS54_443 PF03180 NLPA lipoprotein AS54_4431 PF03717 Penicillin-binding Protein dimerisation domain AS54_4431 PF00905 Penicillin binding protein transpeptidase domain AS54_4432 PF01272 Transcription elongation factor, GreA/GreB, C-term AS54_4432 PF03449 Transcription elongation factor, N-terminal AS54_4433 PF00485 Phosphoribulokinase / Uridine kinase family AS54_4437 PF02618 YceG-like family AS54_4438 PF06949 Protein of unknown function (DUF1292) AS54_4439 PF03652 Holliday junction resolvase AS54_4440 PF06135 IreB regulatory phosphoprotein AS54_4441 PF02272 DHHA1 domain AS54_4441 PF01411 tRNA synthetases class II (A) AS54_4441 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS54_4443 PF01594 AI-2E family transporter AS54_4447 PF13538 UvrD-like helicase C-terminal domain AS54_4447 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AS54_4447 PF14490 Helix-hairpin-helix containing domain AS54_4450 PF00266 Aminotransferase class-V AS54_4451 PF02082 Transcriptional regulator AS54_4452 PF12002 MgsA AAA+ ATPase C terminal AS54_4452 PF05496 Holliday junction DNA helicase RuvB P-loop domain AS54_4452 PF16193 AAA C-terminal domain AS54_4454 PF00899 ThiF family AS54_4455 PF02938 GAD domain AS54_4455 PF01336 OB-fold nucleic acid binding domain AS54_4455 PF00152 tRNA synthetases class II (D, K and N) AS54_4456 PF03129 Anticodon binding domain AS54_4456 PF13393 Histidyl-tRNA synthetase AS54_4458 PF02580 D-Tyr-tRNA(Tyr) deacylase AS54_4459 PF13291 ACT domain AS54_4459 PF04607 Region found in RelA / SpoT proteins AS54_4459 PF02824 TGS domain AS54_446 PF17886 HSP20-like domain found in ArsA AS54_446 PF02374 Anion-transporting ATPase AS54_4460 PF00156 Phosphoribosyl transferase domain AS54_4461 PF17768 RecJ OB domain AS54_4461 PF02272 DHHA1 domain AS54_4461 PF01368 DHH family AS54_4461 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AS54_4462 PF16916 Dimerisation domain of Zinc Transporter AS54_4462 PF01545 Cation efflux family AS54_4463 PF02355 Protein export membrane protein AS54_4463 PF07549 SecD/SecF GG Motif AS54_4464 PF13797 Post-transcriptional regulator AS54_4465 PF14667 Polysaccharide biosynthesis C-terminal domain AS54_4465 PF01943 Polysaccharide biosynthesis protein AS54_4466 PF04239 Protein of unknown function (DUF421) AS54_4468 PF02699 Preprotein translocase subunit AS54_4469 PF01702 Queuine tRNA-ribosyltransferase AS54_447 PF01047 MarR family AS54_4470 PF02547 Queuosine biosynthesis protein AS54_4471 PF11146 Protein of unknown function (DUF2905) AS54_4472 PF17864 RuvB AAA lid domain AS54_4472 PF05496 Holliday junction DNA helicase RuvB P-loop domain AS54_4472 PF05491 RuvB C-terminal winged helix domain AS54_4473 PF01330 RuvA N terminal domain AS54_4473 PF07499 RuvA, C-terminal domain AS54_4474 PF01497 Periplasmic binding protein AS54_4476 PF00892 EamA-like transporter family AS54_4477 PF00892 EamA-like transporter family AS54_4478 PF01022 Bacterial regulatory protein, arsR family AS54_448 PF05360 yiaA/B two helix domain AS54_4481 PF01476 LysM domain AS54_4482 PF02445 Quinolinate synthetase A protein AS54_4483 PF00890 FAD binding domain AS54_4483 PF02910 Fumarate reductase flavoprotein C-term AS54_4484 PF00266 Aminotransferase class-V AS54_4485 PF02829 3H domain AS54_4485 PF08279 HTH domain AS54_4486 PF03473 MOSC domain AS54_4486 PF03475 3-alpha domain AS54_4487 PF01842 ACT domain AS54_4487 PF00800 Prephenate dehydratase AS54_4488 PF02687 FtsX-like permease family AS54_4489 PF02687 FtsX-like permease family AS54_449 PF02686 Glu-tRNAGln amidotransferase C subunit AS54_4490 PF00005 ABC transporter AS54_4491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4492 PF00486 Transcriptional regulatory protein, C terminal AS54_4492 PF00072 Response regulator receiver domain AS54_4493 PF01926 50S ribosome-binding GTPase AS54_4493 PF09269 Domain of unknown function (DUF1967) AS54_4493 PF01018 GTP1/OBG AS54_4494 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS54_4494 PF14682 Sporulation initiation phospho-transferase B, C-terminal AS54_4495 PF01016 Ribosomal L27 protein AS54_4496 PF04327 Cysteine protease Prp AS54_4497 PF00829 Ribosomal prokaryotic L21 protein AS54_4498 PF00575 S1 RNA binding domain AS54_4498 PF10150 Ribonuclease E/G family AS54_4499 PF02163 Peptidase family M50 AS54_450 PF01425 Amidase AS54_4500 PF01551 Peptidase family M23 AS54_4501 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AS54_4502 PF03775 Septum formation inhibitor MinC, C-terminal domain AS54_4504 PF04085 rod shape-determining protein MreC AS54_4506 PF04002 RadC-like JAB domain AS54_4507 PF02545 Maf-like protein AS54_4509 PF02875 Mur ligase family, glutamate ligase domain AS54_4509 PF08245 Mur ligase middle domain AS54_451 PF02934 GatB/GatE catalytic domain AS54_451 PF02637 GatB domain AS54_4510 PF10458 Valyl tRNA synthetase tRNA binding arm AS54_4510 PF00133 tRNA synthetases class I (I, L, M and V) AS54_4510 PF08264 Anticodon-binding domain of tRNA AS54_4512 PF01476 LysM domain AS54_4513 PF00202 Aminotransferase class-III AS54_4514 PF00490 Delta-aminolevulinic acid dehydratase AS54_4515 PF02602 Uroporphyrinogen-III synthase HemD AS54_4516 PF03900 Porphobilinogen deaminase, C-terminal domain AS54_4516 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AS54_4517 PF01578 Cytochrome C assembly protein AS54_4518 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AS54_4518 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AS54_4518 PF01488 Shikimate / quinate 5-dehydrogenase AS54_4519 PF01047 MarR family AS54_452 PF00781 Diacylglycerol kinase catalytic domain AS54_4520 PF02566 OsmC-like protein AS54_4521 PF01926 50S ribosome-binding GTPase AS54_4522 PF05362 Lon protease (S16) C-terminal proteolytic domain AS54_4522 PF00004 ATPase family associated with various cellular activities (AAA) AS54_4522 PF02190 ATP-dependent protease La (LON) substrate-binding domain AS54_4523 PF00004 ATPase family associated with various cellular activities (AAA) AS54_4523 PF05362 Lon protease (S16) C-terminal proteolytic domain AS54_4524 PF07724 AAA domain (Cdc48 subfamily) AS54_4524 PF10431 C-terminal, D2-small domain, of ClpB protein AS54_4524 PF06689 ClpX C4-type zinc finger AS54_4525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AS54_4525 PF05697 Bacterial trigger factor protein (TF) AS54_4525 PF05698 Bacterial trigger factor protein (TF) C-terminus AS54_453 PF13419 Haloacid dehalogenase-like hydrolase AS54_4530 PF11724 YvbH-like oligomerisation region AS54_4530 PF08000 Bacterial PH domain AS54_4533 PF12850 Calcineurin-like phosphoesterase superfamily domain AS54_4534 PF01725 Ham1 family AS54_4535 PF03725 3' exoribonuclease family, domain 2 AS54_4535 PF01138 3' exoribonuclease family, domain 1 AS54_4536 PF10646 Sporulation and spore germination AS54_4537 PF01177 Asp/Glu/Hydantoin racemase AS54_4538 PF07690 Major Facilitator Superfamily AS54_454 PF00202 Aminotransferase class-III AS54_4540 PF00440 Bacterial regulatory proteins, tetR family AS54_4541 PF01965 DJ-1/PfpI family AS54_4543 PF00196 Bacterial regulatory proteins, luxR family AS54_4544 PF00860 Permease family AS54_4545 PF07969 Amidohydrolase family AS54_4546 PF04024 PspC domain AS54_4547 PF07883 Cupin domain AS54_4547 PF01381 Helix-turn-helix AS54_4548 PF13536 Putative multidrug resistance efflux transporter AS54_4549 PF00230 Major intrinsic protein AS54_455 PF00158 Sigma-54 interaction domain AS54_4551 PF02082 Transcriptional regulator AS54_4553 PF13732 Domain of unknown function (DUF4162) AS54_4553 PF00005 ABC transporter AS54_4554 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AS54_4555 PF13677 Membrane MotB of proton-channel complex MotA/MotB AS54_4555 PF00691 OmpA family AS54_4556 PF01618 MotA/TolQ/ExbB proton channel family AS54_4557 PF02557 D-alanyl-D-alanine carboxypeptidase AS54_4558 PF03061 Thioesterase superfamily AS54_4559 PF13085 2Fe-2S iron-sulfur cluster binding domain AS54_4559 PF13183 4Fe-4S dicluster domain AS54_456 PF00171 Aldehyde dehydrogenase family AS54_4560 PF00890 FAD binding domain AS54_4560 PF02910 Fumarate reductase flavoprotein C-term AS54_4561 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AS54_4562 PF10702 Protein of unknown function (DUF2507) AS54_4563 PF02151 UvrB/uvrC motif AS54_4563 PF08459 UvrC Helix-hairpin-helix N-terminal AS54_4563 PF01541 GIY-YIG catalytic domain AS54_4564 PF00085 Thioredoxin AS54_4565 PF00766 Electron transfer flavoprotein FAD-binding domain AS54_4565 PF01012 Electron transfer flavoprotein domain AS54_4566 PF01012 Electron transfer flavoprotein domain AS54_4567 PF00378 Enoyl-CoA hydratase/isomerase AS54_4568 PF00440 Bacterial regulatory proteins, tetR family AS54_4568 PF08359 YsiA-like protein, C-terminal region AS54_4569 PF00501 AMP-binding enzyme AS54_4569 PF13193 AMP-binding enzyme C-terminal domain AS54_457 PF00893 Small Multidrug Resistance protein AS54_4571 PF01497 Periplasmic binding protein AS54_4572 PF01032 FecCD transport family AS54_4573 PF05163 DinB family AS54_4578 PF00005 ABC transporter AS54_4579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4579 PF00512 His Kinase A (phospho-acceptor) domain AS54_458 PF02073 Thermophilic metalloprotease (M29) AS54_4580 PF00072 Response regulator receiver domain AS54_4580 PF00486 Transcriptional regulatory protein, C terminal AS54_4582 PF09962 Uncharacterized conserved protein (DUF2196) AS54_4583 PF10672 S-adenosylmethionine-dependent methyltransferase AS54_4583 PF17785 PUA-like domain AS54_4585 PF03992 Antibiotic biosynthesis monooxygenase AS54_4586 PF04203 Sortase domain AS54_4587 PF00005 ABC transporter AS54_4588 PF01032 FecCD transport family AS54_4589 PF01497 Periplasmic binding protein AS54_4590 PF05031 Iron Transport-associated domain AS54_4591 PF05031 Iron Transport-associated domain AS54_4592 PF05525 Branched-chain amino acid transport protein AS54_4593 PF00849 RNA pseudouridylate synthase AS54_4593 PF01479 S4 domain AS54_4595 PF01713 Smr domain AS54_4595 PF00488 MutS domain V AS54_4596 PF02811 PHP domain AS54_4596 PF14716 Helix-hairpin-helix domain AS54_4596 PF14791 DNA polymerase beta thumb AS54_4597 PF02674 Colicin V production protein AS54_4598 PF05164 Cell division protein ZapA AS54_4599 PF01351 Ribonuclease HII AS54_4599 PF11858 Domain of unknown function (DUF3378) AS54_4603 PF00152 tRNA synthetases class II (D, K and N) AS54_4603 PF01336 OB-fold nucleic acid binding domain AS54_4604 PF03483 B3/4 domain AS54_4604 PF03147 Ferredoxin-fold anticodon binding domain AS54_4604 PF01588 Putative tRNA binding domain AS54_4604 PF03484 tRNA synthetase B5 domain AS54_4604 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AS54_4605 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AS54_4605 PF01409 tRNA synthetases class II core domain (F) AS54_4606 PF08032 RNA 2'-O ribose methyltransferase substrate binding AS54_4606 PF00588 SpoU rRNA Methylase family AS54_4607 PF14098 Small, acid-soluble spore protein I AS54_4608 PF01966 HD domain AS54_461 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_461 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_461 PF07670 Nucleoside recognition AS54_4615 PF07690 Major Facilitator Superfamily AS54_4617 PF00440 Bacterial regulatory proteins, tetR family AS54_4617 PF16859 Tetracyclin repressor-like, C-terminal domain AS54_4618 PF05343 M42 glutamyl aminopeptidase AS54_462 PF02475 Met-10+ like-protein AS54_462 PF01938 TRAM domain AS54_462 PF05958 tRNA (Uracil-5-)-methyltransferase AS54_4620 PF00453 Ribosomal protein L20 AS54_4621 PF01632 Ribosomal protein L35 AS54_4622 PF05198 Translation initiation factor IF-3, N-terminal domain AS54_4622 PF00707 Translation initiation factor IF-3, C-terminal domain AS54_4623 PF03129 Anticodon binding domain AS54_4623 PF02824 TGS domain AS54_4623 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS54_4623 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS54_4624 PF08812 YtxC-like family AS54_4625 PF07319 Primosomal protein DnaI N-terminus AS54_4625 PF01695 IstB-like ATP binding protein AS54_4626 PF07261 Replication initiation and membrane attachment AS54_4627 PF03477 ATP cone domain AS54_4628 PF02675 S-adenosylmethionine decarboxylase AS54_4629 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AS54_4629 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS54_463 PF01207 Dihydrouridine synthase (Dus) AS54_4630 PF01121 Dephospho-CoA kinase AS54_4631 PF02659 Putative manganese efflux pump AS54_4632 PF06827 Zinc finger found in FPG and IleRS AS54_4632 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AS54_4632 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AS54_4633 PF00476 DNA polymerase family A AS54_4633 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AS54_4633 PF01367 5'-3' exonuclease, C-terminal SAM fold AS54_4634 PF00989 PAS fold AS54_4634 PF00512 His Kinase A (phospho-acceptor) domain AS54_4634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4634 PF16736 Single Cache-like AS54_4635 PF00072 Response regulator receiver domain AS54_4635 PF00486 Transcriptional regulatory protein, C terminal AS54_4639 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS54_4639 PF00056 lactate/malate dehydrogenase, NAD binding domain AS54_464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_464 PF00512 His Kinase A (phospho-acceptor) domain AS54_464 PF00989 PAS fold AS54_464 PF13426 PAS domain AS54_464 PF13188 PAS domain AS54_4640 PF00180 Isocitrate/isopropylmalate dehydrogenase AS54_4641 PF00285 Citrate synthase, C-terminal domain AS54_4642 PF04284 Protein of unknown function (DUF441) AS54_4643 PF01594 AI-2E family transporter AS54_4644 PF04186 FxsA cytoplasmic membrane protein AS54_4645 PF02887 Pyruvate kinase, alpha/beta domain AS54_4645 PF00224 Pyruvate kinase, barrel domain AS54_4645 PF00391 PEP-utilising enzyme, mobile domain AS54_4646 PF00365 Phosphofructokinase AS54_4647 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AS54_4648 PF01039 Carboxyl transferase domain AS54_4648 PF17848 Acetyl-coA carboxylase zinc finger domain AS54_4649 PF00392 Bacterial regulatory proteins, gntR family AS54_465 PF07308 Protein of unknown function (DUF1456) AS54_4650 PF00390 Malic enzyme, N-terminal domain AS54_4650 PF03949 Malic enzyme, NAD binding domain AS54_4651 PF02811 PHP domain AS54_4651 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS54_4651 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS54_4651 PF01336 OB-fold nucleic acid binding domain AS54_4651 PF14579 Helix-hairpin-helix motif AS54_4652 PF14034 Sporulation protein YtrH AS54_4654 PF01368 DHH family AS54_4654 PF02272 DHHA1 domain AS54_4655 PF14007 YtpI-like protein AS54_4658 PF07085 DRTGG domain AS54_4658 PF00392 Bacterial regulatory proteins, gntR family AS54_4658 PF03061 Thioesterase superfamily AS54_4658 PF00571 CBS domain AS54_4661 PF00557 Metallopeptidase family M24 AS54_4661 PF01321 Creatinase/Prolidase N-terminal domain AS54_4667 PF08281 Sigma-70, region 4 AS54_4667 PF04542 Sigma-70 region 2 AS54_4670 PF07883 Cupin domain AS54_4672 PF01381 Helix-turn-helix AS54_4674 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS54_4674 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AS54_4676 PF00582 Universal stress protein family AS54_468 PF13378 Enolase C-terminal domain-like AS54_468 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS54_4680 PF14698 Argininosuccinate lyase C-terminal AS54_4680 PF00206 Lyase AS54_4681 PF00764 Arginosuccinate synthase AS54_4685 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_4685 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_4686 PF12787 EcsC protein family AS54_4688 PF00871 Acetokinase family AS54_4689 PF02384 N-6 DNA Methylase AS54_4690 PF08534 Redoxin AS54_4691 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AS54_4693 PF01513 ATP-NAD kinase AS54_4694 PF07969 Amidohydrolase family AS54_4696 PF13193 AMP-binding enzyme C-terminal domain AS54_4696 PF00501 AMP-binding enzyme AS54_4697 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS54_4698 PF02568 Thiamine biosynthesis protein (ThiI) AS54_4698 PF02926 THUMP domain AS54_4699 PF00266 Aminotransferase class-V AS54_47 PF00709 Adenylosuccinate synthetase AS54_4700 PF06160 Septation ring formation regulator, EzrA AS54_4701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_4701 PF03466 LysR substrate binding domain AS54_4702 PF00892 EamA-like transporter family AS54_4703 PF00892 EamA-like transporter family AS54_4704 PF00440 Bacterial regulatory proteins, tetR family AS54_4705 PF13185 GAF domain AS54_4706 PF01053 Cys/Met metabolism PLP-dependent enzyme AS54_4707 PF01479 S4 domain AS54_4707 PF00163 Ribosomal protein S4/S9 N-terminal domain AS54_471 PF07687 Peptidase dimerisation domain AS54_471 PF01546 Peptidase family M20/M25/M40 AS54_4715 PF01479 S4 domain AS54_4715 PF00579 tRNA synthetases class I (W and Y) AS54_4717 PF13193 AMP-binding enzyme C-terminal domain AS54_4717 PF00501 AMP-binding enzyme AS54_4718 PF00583 Acetyltransferase (GNAT) family AS54_4719 PF00571 CBS domain AS54_4720 PF00850 Histone deacetylase domain AS54_4723 PF00486 Transcriptional regulatory protein, C terminal AS54_4723 PF00072 Response regulator receiver domain AS54_4724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4724 PF00512 His Kinase A (phospho-acceptor) domain AS54_4724 PF13426 PAS domain AS54_4724 PF00672 HAMP domain AS54_4725 PF12796 Ankyrin repeats (3 copies) AS54_4726 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS54_4727 PF01741 Large-conductance mechanosensitive channel, MscL AS54_473 PF13192 Thioredoxin domain AS54_473 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_4732 PF00356 Bacterial regulatory proteins, lacI family AS54_4733 PF07537 CamS sex pheromone cAM373 precursor AS54_4734 PF11009 Protein of unknown function (DUF2847) AS54_4736 PF02073 Thermophilic metalloprotease (M29) AS54_474 PF00578 AhpC/TSA family AS54_4740 PF02687 FtsX-like permease family AS54_4741 PF00005 ABC transporter AS54_4744 PF13302 Acetyltransferase (GNAT) domain AS54_4745 PF03551 Transcriptional regulator PadR-like family AS54_4747 PF08245 Mur ligase middle domain AS54_4747 PF01225 Mur ligase family, catalytic domain AS54_4747 PF02875 Mur ligase family, glutamate ligase domain AS54_4749 PF17854 FtsK alpha domain AS54_4749 PF09397 Ftsk gamma domain AS54_4749 PF01580 FtsK/SpoIIIE family AS54_475 PF01636 Phosphotransferase enzyme family AS54_4751 PF14794 Domain of unknown function (DUF4479) AS54_4751 PF01588 Putative tRNA binding domain AS54_4752 PF07285 Protein of unknown function (DUF1444) AS54_4753 PF00085 Thioredoxin AS54_4754 PF01931 Protein of unknown function DUF84 AS54_4755 PF05343 M42 glutamyl aminopeptidase AS54_4757 PF00753 Metallo-beta-lactamase superfamily AS54_4758 PF02390 Putative methyltransferase AS54_4759 PF14165 YtzH-like protein AS54_4760 PF01636 Phosphotransferase enzyme family AS54_4761 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS54_4761 PF00128 Alpha amylase, catalytic domain AS54_4761 PF17999 Pullulanase N1-terminal domain AS54_4762 PF02834 LigT like Phosphoesterase AS54_4763 PF01546 Peptidase family M20/M25/M40 AS54_4764 PF08220 DeoR-like helix-turn-helix domain AS54_4765 PF00849 RNA pseudouridylate synthase AS54_4765 PF01479 S4 domain AS54_4766 PF14667 Polysaccharide biosynthesis C-terminal domain AS54_4766 PF01943 Polysaccharide biosynthesis protein AS54_4768 PF07690 Major Facilitator Superfamily AS54_4769 PF01022 Bacterial regulatory protein, arsR family AS54_477 PF00596 Class II Aldolase and Adducin N-terminal domain AS54_4770 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AS54_4772 PF10957 Sporulation protein Cse60 AS54_4774 PF02559 CarD-like/TRCF domain AS54_4776 PF06800 Sugar transport protein AS54_4779 PF02391 MoaE protein AS54_478 PF01032 FecCD transport family AS54_4780 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AS54_4781 PF03453 MoeA N-terminal region (domain I and II) AS54_4781 PF03454 MoeA C-terminal region (domain IV) AS54_4781 PF00994 Probable molybdopterin binding domain AS54_4782 PF01967 MoaC family AS54_4783 PF00899 ThiF family AS54_4784 PF04055 Radical SAM superfamily AS54_4784 PF06463 Molybdenum Cofactor Synthesis C AS54_4788 PF00581 Rhodanese-like domain AS54_479 PF01032 FecCD transport family AS54_4790 PF00561 alpha/beta hydrolase fold AS54_4791 PF03323 Bacillus/Clostridium GerA spore germination protein AS54_4792 PF03845 Spore germination protein AS54_4797 PF08264 Anticodon-binding domain of tRNA AS54_4797 PF00133 tRNA synthetases class I (I, L, M and V) AS54_4797 PF09334 tRNA synthetases class I (M) AS54_4797 PF13603 Leucyl-tRNA synthetase, Domain 2 AS54_4798 PF07690 Major Facilitator Superfamily AS54_4799 PF00999 Sodium/hydrogen exchanger family AS54_48 PF00772 DnaB-like helicase N terminal domain AS54_48 PF03796 DnaB-like helicase C terminal domain AS54_480 PF01497 Periplasmic binding protein AS54_4800 PF02080 TrkA-C domain AS54_4801 PF00589 Phage integrase family AS54_4804 PF00005 ABC transporter AS54_4805 PF07786 Protein of unknown function (DUF1624) AS54_4805 PF04235 Protein of unknown function (DUF418) AS54_4808 PF04055 Radical SAM superfamily AS54_4808 PF16199 Radical_SAM C-terminal domain AS54_4809 PF06962 Putative rRNA methylase AS54_481 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_4810 PF00005 ABC transporter AS54_4812 PF01177 Asp/Glu/Hydantoin racemase AS54_4815 PF10776 Protein of unknown function (DUF2600) AS54_4816 PF12146 Serine aminopeptidase, S33 AS54_4817 PF00132 Bacterial transferase hexapeptide (six repeats) AS54_4818 PF01569 PAP2 superfamily AS54_4819 PF13439 Glycosyltransferase Family 4 AS54_4819 PF00534 Glycosyl transferases group 1 AS54_4820 PF12804 MobA-like NTP transferase domain AS54_4821 PF00994 Probable molybdopterin binding domain AS54_4825 PF02773 S-adenosylmethionine synthetase, C-terminal domain AS54_4825 PF02772 S-adenosylmethionine synthetase, central domain AS54_4825 PF00438 S-adenosylmethionine synthetase, N-terminal domain AS54_4826 PF01293 Phosphoenolpyruvate carboxykinase AS54_483 PF12728 Helix-turn-helix domain AS54_4833 PF13419 Haloacid dehalogenase-like hydrolase AS54_4834 PF00455 DeoR C terminal sensor domain AS54_4834 PF08220 DeoR-like helix-turn-helix domain AS54_4835 PF13419 Haloacid dehalogenase-like hydrolase AS54_4836 PF13426 PAS domain AS54_4836 PF13188 PAS domain AS54_4836 PF00512 His Kinase A (phospho-acceptor) domain AS54_4836 PF00989 PAS fold AS54_4836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4837 PF00512 His Kinase A (phospho-acceptor) domain AS54_4837 PF00989 PAS fold AS54_4837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4837 PF08447 PAS fold AS54_4838 PF08386 TAP-like protein AS54_4838 PF00561 alpha/beta hydrolase fold AS54_4839 PF00884 Sulfatase AS54_4843 PF00005 ABC transporter AS54_4844 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4847 PF13419 Haloacid dehalogenase-like hydrolase AS54_4849 PF00293 NUDIX domain AS54_4853 PF02664 S-Ribosylhomocysteinase (LuxS) AS54_4854 PF00484 Carbonic anhydrase AS54_4855 PF01809 Putative membrane protein insertion efficiency factor AS54_4856 PF01654 Cytochrome bd terminal oxidase subunit I AS54_4857 PF02322 Cytochrome bd terminal oxidase subunit II AS54_4858 PF10676 Spore germination protein gerPA/gerPF AS54_4861 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_4861 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_4866 PF04012 PspA/IM30 family AS54_4878 PF07670 Nucleoside recognition AS54_4878 PF02421 Ferrous iron transport protein B AS54_4878 PF17910 FeoB cytosolic helical domain AS54_4878 PF07664 Ferrous iron transport protein B C terminus AS54_4880 PF09515 Thiamine transporter protein (Thia_YuaJ) AS54_4881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4881 PF00512 His Kinase A (phospho-acceptor) domain AS54_4881 PF00672 HAMP domain AS54_4882 PF00486 Transcriptional regulatory protein, C terminal AS54_4882 PF00072 Response regulator receiver domain AS54_4888 PF00781 Diacylglycerol kinase catalytic domain AS54_4889 PF07282 Putative transposase DNA-binding domain AS54_4889 PF01385 Probable transposase AS54_4889 PF12323 Helix-turn-helix domain AS54_4893 PF09335 SNARE associated Golgi protein AS54_4894 PF00398 Ribosomal RNA adenine dimethylase AS54_4895 PF02311 AraC-like ligand binding domain AS54_4895 PF12833 Helix-turn-helix domain AS54_4897 PF02687 FtsX-like permease family AS54_4898 PF00005 ABC transporter AS54_4899 PF06445 GyrI-like small molecule binding domain AS54_4899 PF12833 Helix-turn-helix domain AS54_49 PF01281 Ribosomal protein L9, N-terminal domain AS54_49 PF03948 Ribosomal protein L9, C-terminal domain AS54_4900 PF00072 Response regulator receiver domain AS54_4900 PF00486 Transcriptional regulatory protein, C terminal AS54_4901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4902 PF02687 FtsX-like permease family AS54_4903 PF02687 FtsX-like permease family AS54_4904 PF00005 ABC transporter AS54_4905 PF02687 FtsX-like permease family AS54_4907 PF02447 GntP family permease AS54_4910 PF07071 KDGP aldolase AS54_4911 PF03841 L-seryl-tRNA selenium transferase AS54_4912 PF01979 Amidohydrolase family AS54_4913 PF02557 D-alanyl-D-alanine carboxypeptidase AS54_4914 PF00512 His Kinase A (phospho-acceptor) domain AS54_4914 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_4915 PF00072 Response regulator receiver domain AS54_4915 PF00486 Transcriptional regulatory protein, C terminal AS54_4916 PF13378 Enolase C-terminal domain-like AS54_4916 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS54_4917 PF00501 AMP-binding enzyme AS54_4917 PF13193 AMP-binding enzyme C-terminal domain AS54_4918 PF00378 Enoyl-CoA hydratase/isomerase AS54_4919 PF12697 Alpha/beta hydrolase family AS54_492 PF10127 RNA repair pathway DNA polymerase beta family AS54_4920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_4920 PF16582 Middle domain of thiamine pyrophosphate AS54_4920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_4921 PF00425 chorismate binding enzyme AS54_4922 PF01040 UbiA prenyltransferase family AS54_4923 PF01258 Prokaryotic dksA/traR C4-type zinc finger AS54_4924 PF00313 'Cold-shock' DNA-binding domain AS54_4928 PF00343 Carbohydrate phosphorylase AS54_4929 PF00534 Glycosyl transferases group 1 AS54_4929 PF08323 Starch synthase catalytic domain AS54_493 PF07690 Major Facilitator Superfamily AS54_4930 PF00483 Nucleotidyl transferase AS54_4931 PF00483 Nucleotidyl transferase AS54_4932 PF00128 Alpha amylase, catalytic domain AS54_4932 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS54_4932 PF02806 Alpha amylase, C-terminal all-beta domain AS54_4934 PF02225 PA domain AS54_4934 PF05922 Peptidase inhibitor I9 AS54_4934 PF13860 FlgD Ig-like domain AS54_4934 PF00082 Subtilase family AS54_4935 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS54_4935 PF00056 lactate/malate dehydrogenase, NAD binding domain AS54_494 PF00355 Rieske [2Fe-2S] domain AS54_494 PF01266 FAD dependent oxidoreductase AS54_4954 PF05698 Bacterial trigger factor protein (TF) C-terminus AS54_4954 PF05697 Bacterial trigger factor protein (TF) AS54_496 PF00528 Binding-protein-dependent transport system inner membrane component AS54_4962 PF02308 MgtC family AS54_4963 PF08868 YugN-like family AS54_4964 PF07885 Ion channel AS54_4964 PF02254 TrkA-N domain AS54_4965 PF00342 Phosphoglucose isomerase AS54_4966 PF04070 Domain of unknown function (DUF378) AS54_4967 PF00575 S1 RNA binding domain AS54_4968 PF00155 Aminotransferase class I and II AS54_4969 PF01037 Lrp/AsnC ligand binding domain AS54_497 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS54_4970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS54_4970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS54_4971 PF00561 alpha/beta hydrolase fold AS54_4971 PF08386 TAP-like protein AS54_4974 PF00155 Aminotransferase class I and II AS54_4977 PF08810 Kinase associated protein B AS54_4978 PF00929 Exonuclease AS54_4979 PF03600 Citrate transporter AS54_498 PF00005 ABC transporter AS54_4982 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS54_4982 PF03129 Anticodon binding domain AS54_4983 PF03061 Thioesterase superfamily AS54_4985 PF02632 BioY family AS54_4986 PF00483 Nucleotidyl transferase AS54_4987 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AS54_4987 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AS54_4987 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AS54_4987 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AS54_4988 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS54_4988 PF10372 Bacterial membrane-spanning protein N-terminus AS54_4989 PF02789 Cytosol aminopeptidase family, N-terminal domain AS54_4989 PF00883 Cytosol aminopeptidase family, catalytic domain AS54_499 PF02743 Cache domain AS54_499 PF00672 HAMP domain AS54_499 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_4990 PF06725 3D domain AS54_4992 PF13344 Haloacid dehalogenase-like hydrolase AS54_4992 PF00293 NUDIX domain AS54_4993 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_4994 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_4999 PF04463 Protein of unknown function (DUF523) AS54_50 PF02272 DHHA1 domain AS54_50 PF01368 DHH family AS54_500 PF16657 Maltogenic Amylase, C-terminal domain AS54_500 PF00128 Alpha amylase, catalytic domain AS54_5001 PF01521 Iron-sulphur cluster biosynthesis AS54_5002 PF01678 Diaminopimelate epimerase AS54_5003 PF07293 Protein of unknown function (DUF1450) AS54_5004 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_5005 PF00664 ABC transporter transmembrane region AS54_5005 PF03412 Peptidase C39 family AS54_5005 PF00005 ABC transporter AS54_5006 PF03649 Uncharacterised protein family (UPF0014) AS54_5007 PF03831 PhnA domain AS54_5007 PF08274 PhnA Zinc-Ribbon AS54_501 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS54_501 PF00367 phosphotransferase system, EIIB AS54_501 PF02378 Phosphotransferase system, EIIC AS54_5011 PF07315 Protein of unknown function (DUF1462) AS54_5012 PF01106 NifU-like domain AS54_5015 PF04608 Phosphatidylglycerophosphatase A AS54_5018 PF00005 ABC transporter AS54_5018 PF12704 MacB-like periplasmic core domain AS54_5018 PF02687 FtsX-like permease family AS54_5019 PF02525 Flavodoxin-like fold AS54_502 PF03372 Endonuclease/Exonuclease/phosphatase family AS54_5020 PF13344 Haloacid dehalogenase-like hydrolase AS54_5022 PF01934 Protein of unknown function DUF86 AS54_5023 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AS54_5026 PF06265 Protein of unknown function (DUF1027) AS54_5027 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AS54_5028 PF07739 TipAS antibiotic-recognition domain AS54_5028 PF13411 MerR HTH family regulatory protein AS54_5029 PF10086 YhfC intramembrane metalloprotease AS54_503 PF01061 ABC-2 type transporter AS54_5033 PF04055 Radical SAM superfamily AS54_5033 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AS54_5034 PF01551 Peptidase family M23 AS54_5036 PF08827 Domain of unknown function (DUF1805) AS54_5037 PF02872 5'-nucleotidase, C-terminal domain AS54_5038 PF03551 Transcriptional regulator PadR-like family AS54_5039 PF04892 VanZ like family AS54_504 PF01131 DNA topoisomerase AS54_504 PF01751 Toprim domain AS54_5040 PF01458 Uncharacterized protein family (UPF0051) AS54_5041 PF01592 NifU-like N terminal domain AS54_5042 PF00266 Aminotransferase class-V AS54_5043 PF01458 Uncharacterized protein family (UPF0051) AS54_5044 PF00005 ABC transporter AS54_5045 PF03180 NLPA lipoprotein AS54_5046 PF03180 NLPA lipoprotein AS54_5047 PF00528 Binding-protein-dependent transport system inner membrane component AS54_5048 PF09383 NIL domain AS54_5048 PF00005 ABC transporter AS54_505 PF02110 Hydroxyethylthiazole kinase family AS54_5050 PF00085 Thioredoxin AS54_5051 PF01751 Toprim domain AS54_5052 PF01597 Glycine cleavage H-protein AS54_5053 PF03960 ArsC family AS54_506 PF02581 Thiamine monophosphate synthase AS54_5062 PF00056 lactate/malate dehydrogenase, NAD binding domain AS54_5062 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS54_5068 PF01381 Helix-turn-helix AS54_5068 PF08671 Anti-repressor SinI AS54_5069 PF00440 Bacterial regulatory proteins, tetR family AS54_5069 PF13305 Tetracyclin repressor-like, C-terminal domain AS54_507 PF03605 Anaerobic c4-dicarboxylate membrane transporter AS54_5070 PF00753 Metallo-beta-lactamase superfamily AS54_5073 PF00005 ABC transporter AS54_5078 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS54_5078 PF02770 Acyl-CoA dehydrogenase, middle domain AS54_5078 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS54_5079 PF02803 Thiolase, C-terminal domain AS54_5079 PF00108 Thiolase, N-terminal domain AS54_508 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_508 PF00672 HAMP domain AS54_5080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AS54_5080 PF00378 Enoyl-CoA hydratase/isomerase AS54_5080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AS54_5081 PF14115 YuzL-like protein AS54_5082 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_5082 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_5083 PF01619 Proline dehydrogenase AS54_5084 PF10835 Protein of unknown function (DUF2573) AS54_5085 PF01910 Thiamine-binding protein AS54_5086 PF00672 HAMP domain AS54_5086 PF02743 Cache domain AS54_5086 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_509 PF01910 Thiamine-binding protein AS54_5090 PF07690 Major Facilitator Superfamily AS54_5091 PF13520 Amino acid permease AS54_5094 PF02096 60Kd inner membrane protein AS54_5096 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS54_5096 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS54_51 PF09991 Predicted membrane protein (DUF2232) AS54_510 PF00528 Binding-protein-dependent transport system inner membrane component AS54_5104 PF09335 SNARE associated Golgi protein AS54_5106 PF17969 L,D-transpeptidase C-terminal domain AS54_5106 PF03734 L,D-transpeptidase catalytic domain AS54_5107 PF00072 Response regulator receiver domain AS54_5107 PF00486 Transcriptional regulatory protein, C terminal AS54_5108 PF00989 PAS fold AS54_5108 PF00512 His Kinase A (phospho-acceptor) domain AS54_5108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_5108 PF16736 Single Cache-like AS54_5110 PF08264 Anticodon-binding domain of tRNA AS54_5110 PF09334 tRNA synthetases class I (M) AS54_5112 PF00672 HAMP domain AS54_5112 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_5112 PF02743 Cache domain AS54_5113 PF02743 Cache domain AS54_5113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_5113 PF00672 HAMP domain AS54_5114 PF01883 Iron-sulfur cluster assembly protein AS54_5115 PF01447 Thermolysin metallopeptidase, catalytic domain AS54_5115 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS54_5115 PF07504 Fungalysin/Thermolysin Propeptide Motif AS54_5115 PF03413 Peptidase propeptide and YPEB domain AS54_5116 PF02678 Pirin AS54_5116 PF17954 Quercetinase C-terminal cupin domain AS54_5117 PF01047 MarR family AS54_5119 PF00999 Sodium/hydrogen exchanger family AS54_512 PF00005 ABC transporter AS54_5120 PF02080 TrkA-C domain AS54_5121 PF01235 Sodium:alanine symporter family AS54_5122 PF00210 Ferritin-like domain AS54_5125 PF03641 Possible lysine decarboxylase AS54_5127 PF00210 Ferritin-like domain AS54_5129 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_5129 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_5130 PF07670 Nucleoside recognition AS54_5130 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_5130 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_5131 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_5131 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_5132 PF01235 Sodium:alanine symporter family AS54_5133 PF01235 Sodium:alanine symporter family AS54_5134 PF13460 NAD(P)H-binding AS54_5138 PF00248 Aldo/keto reductase family AS54_5139 PF07690 Major Facilitator Superfamily AS54_514 PF00005 ABC transporter AS54_514 PF12848 ABC transporter AS54_5140 PF01638 HxlR-like helix-turn-helix AS54_5141 PF07849 Protein of unknown function (DUF1641) AS54_5142 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_5143 PF00579 tRNA synthetases class I (W and Y) AS54_5143 PF01479 S4 domain AS54_5144 PF01565 FAD binding domain AS54_5144 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AS54_5146 PF00672 HAMP domain AS54_5146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_5146 PF17202 Single cache domain 3 AS54_5148 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AS54_5149 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AS54_515 PF00041 Fibronectin type III domain AS54_515 PF00704 Glycosyl hydrolases family 18 AS54_5152 PF07690 Major Facilitator Superfamily AS54_5153 PF00005 ABC transporter AS54_5153 PF12848 ABC transporter AS54_5154 PF13302 Acetyltransferase (GNAT) domain AS54_5155 PF06146 Phosphate-starvation-inducible E AS54_5157 PF00005 ABC transporter AS54_5158 PF01032 FecCD transport family AS54_5159 PF01032 FecCD transport family AS54_5161 PF00072 Response regulator receiver domain AS54_5161 PF00486 Transcriptional regulatory protein, C terminal AS54_5162 PF01668 SmpB protein AS54_5163 PF00773 RNB domain AS54_5163 PF17876 Cold shock domain AS54_5163 PF00575 S1 RNA binding domain AS54_5163 PF08206 Ribonuclease B OB domain AS54_5164 PF12146 Serine aminopeptidase, S33 AS54_5165 PF03840 Preprotein translocase SecG subunit AS54_5168 PF03788 LrgA family AS54_5169 PF01156 Inosine-uridine preferring nucleoside hydrolase AS54_5170 PF00113 Enolase, C-terminal TIM barrel domain AS54_5170 PF03952 Enolase, N-terminal domain AS54_5171 PF01676 Metalloenzyme superfamily AS54_5171 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AS54_5172 PF00121 Triosephosphate isomerase AS54_5173 PF00162 Phosphoglycerate kinase AS54_5174 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AS54_5174 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS54_5175 PF04198 Putative sugar-binding domain AS54_5177 PF00309 Sigma-54 factor, Activator interacting domain (AID) AS54_5177 PF04552 Sigma-54, DNA binding domain AS54_5177 PF04963 Sigma-54 factor, core binding domain AS54_5188 PF00239 Resolvase, N terminal domain AS54_5188 PF02796 Helix-turn-helix domain of resolvase AS54_5195 PF00589 Phage integrase family AS54_5195 PF02899 Phage integrase, N-terminal SAM-like domain AS54_5198 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS54_5199 PF07451 Stage V sporulation protein AD (SpoVAD) AS54_52 PF01084 Ribosomal protein S18 AS54_520 PF08360 QacR-like protein, C-terminal region AS54_520 PF00440 Bacterial regulatory proteins, tetR family AS54_5200 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS54_5202 PF04239 Protein of unknown function (DUF421) AS54_5203 PF00574 Clp protease AS54_5204 PF00381 PTS HPr component phosphorylation site AS54_5205 PF10298 WhiA N-terminal LAGLIDADG-like domain AS54_5205 PF14527 WhiA LAGLIDADG-like domain AS54_5205 PF02650 WhiA C-terminal HTH domain AS54_5206 PF01933 Uncharacterised protein family UPF0052 AS54_5207 PF03668 P-loop ATPase protein family AS54_5208 PF00293 NUDIX domain AS54_5210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_5212 PF14602 Hexapeptide repeat of succinyl-transferase AS54_5213 PF13419 Haloacid dehalogenase-like hydrolase AS54_5214 PF01790 Prolipoprotein diacylglyceryl transferase AS54_5215 PF07475 HPr Serine kinase C-terminal domain AS54_5215 PF02603 HPr Serine kinase N terminus AS54_5216 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AS54_5218 PF17760 UvrA interaction domain AS54_5218 PF00005 ABC transporter AS54_5218 PF17755 UvrA DNA-binding domain AS54_5219 PF00271 Helicase conserved C-terminal domain AS54_5219 PF12344 Ultra-violet resistance protein B AS54_5219 PF17757 UvrB interaction domain AS54_5219 PF02151 UvrB/uvrC motif AS54_5219 PF04851 Type III restriction enzyme, res subunit AS54_5222 PF07739 TipAS antibiotic-recognition domain AS54_5222 PF13411 MerR HTH family regulatory protein AS54_5227 PF03601 Conserved hypothetical protein 698 AS54_5228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_5228 PF03466 LysR substrate binding domain AS54_5229 PF09278 MerR, DNA binding AS54_5229 PF00376 MerR family regulatory protein AS54_5230 PF03358 NADPH-dependent FMN reductase AS54_5231 PF00005 ABC transporter AS54_5231 PF16326 ABC transporter C-terminal domain AS54_5231 PF12848 ABC transporter AS54_5232 PF01906 Putative heavy-metal-binding AS54_5233 PF00664 ABC transporter transmembrane region AS54_5233 PF00005 ABC transporter AS54_5234 PF17820 PDZ domain AS54_5235 PF17820 PDZ domain AS54_5235 PF03572 Peptidase family S41 AS54_5235 PF01471 Putative peptidoglycan binding domain AS54_5236 PF02687 FtsX-like permease family AS54_5236 PF18075 FtsX extracellular domain AS54_5237 PF00005 ABC transporter AS54_5238 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS54_5239 PF00472 RF-1 domain AS54_5239 PF03462 PCRF domain AS54_524 PF11700 Vacuole effluxer Atg22 like AS54_5240 PF07516 SecA Wing and Scaffold domain AS54_5240 PF01043 SecA preprotein cross-linking domain AS54_5240 PF07517 SecA DEAD-like domain AS54_5240 PF02810 SEC-C motif AS54_5241 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AS54_5241 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AS54_5242 PF00313 'Cold-shock' DNA-binding domain AS54_5244 PF04851 Type III restriction enzyme, res subunit AS54_5244 PF00271 Helicase conserved C-terminal domain AS54_5245 PF01476 LysM domain AS54_5245 PF00877 NlpC/P60 family AS54_5246 PF01638 HxlR-like helix-turn-helix AS54_5247 PF02645 Uncharacterised protein, DegV family COG1307 AS54_5248 PF09186 Domain of unknown function (DUF1949) AS54_5248 PF01205 Uncharacterized protein family UPF0029 AS54_5249 PF03816 Cell envelope-related transcriptional attenuator domain AS54_5250 PF02350 UDP-N-acetylglucosamine 2-epimerase AS54_5251 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS54_5251 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS54_5251 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS54_5252 PF00953 Glycosyl transferase family 4 AS54_5254 PF03610 PTS system fructose IIA component AS54_5254 PF00874 PRD domain AS54_5254 PF00158 Sigma-54 interaction domain AS54_5256 PF02417 Chromate transporter AS54_5257 PF04794 YdjC-like protein AS54_5258 PF02056 Family 4 glycosyl hydrolase AS54_5258 PF11975 Family 4 glycosyl hydrolase C-terminal domain AS54_5259 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS54_5260 PF02378 Phosphotransferase system, EIIC AS54_5261 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS54_5263 PF02675 S-adenosylmethionine decarboxylase AS54_5266 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS54_5267 PF02378 Phosphotransferase system, EIIC AS54_5268 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS54_5269 PF00375 Sodium:dicarboxylate symporter family AS54_527 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS54_527 PF09180 Prolyl-tRNA synthetase, C-terminal AS54_527 PF03129 Anticodon binding domain AS54_5271 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_5276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS54_5276 PF03466 LysR substrate binding domain AS54_5279 PF01654 Cytochrome bd terminal oxidase subunit I AS54_5280 PF02322 Cytochrome bd terminal oxidase subunit II AS54_5281 PF02040 Arsenical pump membrane protein AS54_5282 PF13667 ThiC-associated domain AS54_5282 PF01964 Radical SAM ThiC family AS54_5283 PF02652 L-lactate permease AS54_5284 PF12323 Helix-turn-helix domain AS54_5284 PF01385 Probable transposase AS54_5284 PF07282 Putative transposase DNA-binding domain AS54_5286 PF09988 Uncharacterized metal-binding protein (DUF2227) AS54_5288 PF00884 Sulfatase AS54_5289 PF01063 Amino-transferase class IV AS54_529 PF00480 ROK family AS54_5290 PF01476 LysM domain AS54_5290 PF00877 NlpC/P60 family AS54_5291 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_5291 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_5295 PF02028 BCCT, betaine/carnitine/choline family transporter AS54_5296 PF01476 LysM domain AS54_5296 PF06725 3D domain AS54_53 PF00436 Single-strand binding protein family AS54_530 PF02342 TerD domain AS54_5301 PF04434 SWIM zinc finger AS54_5302 PF00271 Helicase conserved C-terminal domain AS54_5302 PF00176 SNF2 family N-terminal domain AS54_5302 PF12419 SNF2 Helicase protein AS54_5308 PF04542 Sigma-70 region 2 AS54_5308 PF04545 Sigma-70, region 4 AS54_5309 PF04893 Yip1 domain AS54_531 PF02342 TerD domain AS54_5310 PF04893 Yip1 domain AS54_5311 PF02687 FtsX-like permease family AS54_5311 PF12704 MacB-like periplasmic core domain AS54_5312 PF00005 ABC transporter AS54_5316 PF07690 Major Facilitator Superfamily AS54_5319 PF00512 His Kinase A (phospho-acceptor) domain AS54_5319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_5319 PF18719 ArlS sensor domain AS54_532 PF02342 TerD domain AS54_5320 PF00072 Response regulator receiver domain AS54_5320 PF00486 Transcriptional regulatory protein, C terminal AS54_5321 PF01238 Phosphomannose isomerase type I AS54_5322 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS54_5322 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS54_5322 PF02378 Phosphotransferase system, EIIC AS54_5323 PF05043 Mga helix-turn-helix domain AS54_5323 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS54_5323 PF00874 PRD domain AS54_5323 PF08279 HTH domain AS54_5324 PF16363 GDP-mannose 4,6 dehydratase AS54_5326 PF03816 Cell envelope-related transcriptional attenuator domain AS54_5327 PF01238 Phosphomannose isomerase type I AS54_5328 PF00483 Nucleotidyl transferase AS54_5328 PF01050 Mannose-6-phosphate isomerase AS54_5329 PF13439 Glycosyltransferase Family 4 AS54_5329 PF00534 Glycosyl transferases group 1 AS54_533 PF03741 Integral membrane protein TerC family AS54_5330 PF00534 Glycosyl transferases group 1 AS54_5330 PF13439 Glycosyltransferase Family 4 AS54_5331 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS54_5331 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS54_5331 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS54_5333 PF13439 Glycosyltransferase Family 4 AS54_5333 PF00534 Glycosyl transferases group 1 AS54_5334 PF01943 Polysaccharide biosynthesis protein AS54_5335 PF02397 Bacterial sugar transferase AS54_5336 PF00483 Nucleotidyl transferase AS54_5338 PF13614 AAA domain AS54_5339 PF13807 G-rich domain on putative tyrosine kinase AS54_5339 PF02706 Chain length determinant protein AS54_534 PF14266 Putative component of 'biosynthetic module' AS54_5340 PF13614 AAA domain AS54_5341 PF07977 FabA-like domain AS54_5343 PF12116 Stage III sporulation protein D AS54_5344 PF01551 Peptidase family M23 AS54_5346 PF00005 ABC transporter AS54_5347 PF00072 Response regulator receiver domain AS54_5347 PF04397 LytTr DNA-binding domain AS54_5348 PF08486 Stage II sporulation protein AS54_5349 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS54_535 PF05816 Toxic anion resistance protein (TelA) AS54_5351 PF06612 Protein of unknown function (DUF1146) AS54_5352 PF00361 Proton-conducting membrane transporter AS54_5353 PF00361 Proton-conducting membrane transporter AS54_5354 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AS54_5354 PF00361 Proton-conducting membrane transporter AS54_5354 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AS54_5355 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AS54_5356 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AS54_5358 PF00146 NADH dehydrogenase AS54_5359 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AS54_536 PF00690 Cation transporter/ATPase, N-terminus AS54_536 PF00689 Cation transporting ATPase, C-terminus AS54_5360 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AS54_5361 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AS54_5362 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AS54_5363 PF00563 EAL domain AS54_5363 PF00990 Diguanylate cyclase, GGDEF domain AS54_5363 PF03707 Bacterial signalling protein N terminal repeat AS54_5366 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AS54_5366 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AS54_5367 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS54_5367 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS54_5368 PF00231 ATP synthase AS54_5369 PF00306 ATP synthase alpha/beta chain, C terminal domain AS54_5369 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS54_5369 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS54_537 PF06569 Protein of unknown function (DUF1128) AS54_5370 PF00213 ATP synthase delta (OSCP) subunit AS54_5371 PF00430 ATP synthase B/B' CF(0) AS54_5372 PF00137 ATP synthase subunit C AS54_5373 PF00119 ATP synthase A chain AS54_5374 PF03899 ATP synthase I chain AS54_5377 PF00464 Serine hydroxymethyltransferase AS54_5378 PF13276 HTH-like domain AS54_5378 PF13333 Integrase core domain AS54_5378 PF00665 Integrase core domain AS54_538 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS54_5380 PF04260 Protein of unknown function (DUF436) AS54_5381 PF02502 Ribose/Galactose Isomerase AS54_5382 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS54_5383 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS54_5384 PF07681 DoxX AS54_5385 PF01613 Flavin reductase like domain AS54_5389 PF02659 Putative manganese efflux pump AS54_5390 PF01300 Telomere recombination AS54_5390 PF03481 Putative GTP-binding controlling metal-binding AS54_5392 PF09551 Stage II sporulation protein R (spore_II_R) AS54_5393 PF17827 PrmC N-terminal domain AS54_5393 PF13847 Methyltransferase domain AS54_5394 PF00472 RF-1 domain AS54_5394 PF03462 PCRF domain AS54_5395 PF00265 Thymidine kinase AS54_5396 PF01197 Ribosomal protein L31 AS54_5397 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS54_5397 PF07498 Rho termination factor, N-terminal domain AS54_5397 PF07497 Rho termination factor, RNA-binding domain AS54_5398 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AS54_5399 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS54_54 PF01250 Ribosomal protein S6 AS54_540 PF03631 Virulence factor BrkB AS54_5400 PF01116 Fructose-bisphosphate aldolase class-II AS54_5401 PF00072 Response regulator receiver domain AS54_5402 PF10740 Domain of unknown function (DUF2529) AS54_5403 PF00117 Glutamine amidotransferase class-I AS54_5403 PF06418 CTP synthase N-terminus AS54_5404 PF05066 HB1, ASXL, restriction endonuclease HTH domain AS54_5406 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS54_5406 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS54_5406 PF02770 Acyl-CoA dehydrogenase, middle domain AS54_5407 PF02770 Acyl-CoA dehydrogenase, middle domain AS54_5407 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS54_5407 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS54_5408 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AS54_5408 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AS54_5409 PF02803 Thiolase, C-terminal domain AS54_5409 PF00108 Thiolase, N-terminal domain AS54_5410 PF13183 4Fe-4S dicluster domain AS54_5410 PF02754 Cysteine-rich domain AS54_5411 PF13091 PLD-like domain AS54_5412 PF03851 UV-endonuclease UvdE AS54_5413 PF03707 Bacterial signalling protein N terminal repeat AS54_5413 PF00990 Diguanylate cyclase, GGDEF domain AS54_5413 PF00563 EAL domain AS54_5417 PF00196 Bacterial regulatory proteins, luxR family AS54_5417 PF00072 Response regulator receiver domain AS54_5418 PF07730 Histidine kinase AS54_5418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_542 PF00892 EamA-like transporter family AS54_5420 PF00005 ABC transporter AS54_5421 PF00557 Metallopeptidase family M24 AS54_5423 PF04389 Peptidase family M28 AS54_5423 PF02225 PA domain AS54_5427 PF08281 Sigma-70, region 4 AS54_5427 PF04542 Sigma-70 region 2 AS54_5428 PF00750 tRNA synthetases class I (R) AS54_5428 PF05746 DALR anticodon binding domain AS54_5428 PF03485 Arginyl tRNA synthetase N terminal domain AS54_5429 PF09148 Domain of unknown function (DUF1934) AS54_5430 PF17676 LD-carboxypeptidase C-terminal domain AS54_5430 PF02016 LD-carboxypeptidase N-terminal domain AS54_5433 PF00491 Arginase family AS54_5434 PF17284 Spermidine synthase tetramerisation domain AS54_5435 PF07690 Major Facilitator Superfamily AS54_5436 PF13411 MerR HTH family regulatory protein AS54_5437 PF03009 Glycerophosphoryl diester phosphodiesterase family AS54_5438 PF00912 Transglycosylase AS54_5438 PF00905 Penicillin binding protein transpeptidase domain AS54_5439 PF08741 YwhD family AS54_544 PF10502 Signal peptidase, peptidase S26 AS54_5440 PF02163 Peptidase family M50 AS54_5441 PF01361 Tautomerase enzyme AS54_5442 PF01966 HD domain AS54_5443 PF01497 Periplasmic binding protein AS54_5444 PF00005 ABC transporter AS54_5445 PF01032 FecCD transport family AS54_5446 PF01032 FecCD transport family AS54_5447 PF07293 Protein of unknown function (DUF1450) AS54_5450 PF03099 Biotin/lipoate A/B protein ligase family AS54_5451 PF01515 Phosphate acetyl/butaryl transferase AS54_5453 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_5453 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_5454 PF07486 Cell Wall Hydrolase AS54_5455 PF09671 Spore coat protein (Spore_GerQ) AS54_5456 PF04241 Protein of unknown function (DUF423) AS54_5458 PF07885 Ion channel AS54_5458 PF02254 TrkA-N domain AS54_5459 PF00860 Permease family AS54_5461 PF12823 Domain of unknown function (DUF3817) AS54_5462 PF03167 Uracil DNA glycosylase superfamily AS54_5463 PF12679 ABC-2 family transporter protein AS54_5464 PF00005 ABC transporter AS54_5465 PF13472 GDSL-like Lipase/Acylhydrolase family AS54_5466 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS54_5466 PF00356 Bacterial regulatory proteins, lacI family AS54_5468 PF01842 ACT domain AS54_5468 PF03447 Homoserine dehydrogenase, NAD binding domain AS54_5468 PF00742 Homoserine dehydrogenase AS54_5469 PF04204 Homoserine O-succinyltransferase AS54_547 PF09335 SNARE associated Golgi protein AS54_5470 PF01053 Cys/Met metabolism PLP-dependent enzyme AS54_5471 PF13419 Haloacid dehalogenase-like hydrolase AS54_5472 PF00027 Cyclic nucleotide-binding domain AS54_5473 PF02525 Flavodoxin-like fold AS54_5474 PF00072 Response regulator receiver domain AS54_5474 PF00196 Bacterial regulatory proteins, luxR family AS54_5475 PF13185 GAF domain AS54_5475 PF07730 Histidine kinase AS54_5476 PF08543 Phosphomethylpyrimidine kinase AS54_5477 PF07694 5TMR of 5TMR-LYT AS54_5477 PF00990 Diguanylate cyclase, GGDEF domain AS54_5478 PF04328 Selenoprotein, putative AS54_5479 PF13722 5TM C-terminal transporter carbon starvation CstA AS54_5479 PF02554 Carbon starvation protein CstA AS54_5480 PF00072 Response regulator receiver domain AS54_5480 PF04397 LytTr DNA-binding domain AS54_5481 PF07690 Major Facilitator Superfamily AS54_5482 PF03808 Glycosyl transferase WecB/TagA/CpsF family AS54_5485 PF09156 Anthrax toxin lethal factor, middle domain AS54_5485 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AS54_5486 PF01022 Bacterial regulatory protein, arsR family AS54_5487 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain AS54_5487 PF07691 PA14 domain AS54_5487 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 AS54_5487 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 AS54_5488 PF04231 Endonuclease I AS54_5489 PF00156 Phosphoribosyl transferase domain AS54_5495 PF05043 Mga helix-turn-helix domain AS54_5495 PF08279 HTH domain AS54_5495 PF00874 PRD domain AS54_55 PF06071 Protein of unknown function (DUF933) AS54_55 PF01926 50S ribosome-binding GTPase AS54_550 PF16242 Pyridoxamine 5'-phosphate oxidase like AS54_5500 PF00156 Phosphoribosyl transferase domain AS54_5501 PF03497 Anthrax toxin LF subunit AS54_5501 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AS54_5508 PF13276 HTH-like domain AS54_5508 PF00665 Integrase core domain AS54_5508 PF13333 Integrase core domain AS54_551 PF01699 Sodium/calcium exchanger protein AS54_5510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS54_5510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS54_5510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS54_5511 PF00483 Nucleotidyl transferase AS54_5512 PF00535 Glycosyl transferase family 2 AS54_5514 PF01569 PAP2 superfamily AS54_5515 PF00395 S-layer homology domain AS54_5518 PF05031 Iron Transport-associated domain AS54_5519 PF01385 Probable transposase AS54_5519 PF07282 Putative transposase DNA-binding domain AS54_5519 PF12323 Helix-turn-helix domain AS54_552 PF14167 YfkD-like protein AS54_5522 PF04235 Protein of unknown function (DUF418) AS54_5526 PF09587 Bacterial capsule synthesis protein PGA_cap AS54_5527 PF14102 Capsule biosynthesis CapC AS54_5528 PF08245 Mur ligase middle domain AS54_553 PF04055 Radical SAM superfamily AS54_553 PF08756 YfkB-like domain AS54_555 PF05683 Fumarase C-terminus AS54_555 PF05681 Fumarate hydratase (Fumerase) AS54_556 PF01522 Polysaccharide deacetylase AS54_5566 PF13333 Integrase core domain AS54_5566 PF13276 HTH-like domain AS54_5566 PF00665 Integrase core domain AS54_557 PF00730 HhH-GPD superfamily base excision DNA repair protein AS54_5573 PF01580 FtsK/SpoIIIE family AS54_5573 PF09397 Ftsk gamma domain AS54_5573 PF17854 FtsK alpha domain AS54_5574 PF01022 Bacterial regulatory protein, arsR family AS54_5575 PF13630 SdpI/YhfL protein family AS54_5575 PF07853 Protein of unknown function (DUF1648) AS54_558 PF01938 TRAM domain AS54_558 PF05958 tRNA (Uracil-5-)-methyltransferase AS54_559 PF01416 tRNA pseudouridine synthase AS54_56 PF06107 Bacterial protein of unknown function (DUF951) AS54_561 PF13426 PAS domain AS54_561 PF02954 Bacterial regulatory protein, Fis family AS54_561 PF00158 Sigma-54 interaction domain AS54_5615 PF08378 Nuclease-related domain AS54_5620 PF01751 Toprim domain AS54_5620 PF01131 DNA topoisomerase AS54_5620 PF13342 C-terminal repeat of topoisomerase AS54_5622 PF00565 Staphylococcal nuclease homologue AS54_5625 PF02600 Disulfide bond formation protein DsbB AS54_5626 PF01022 Bacterial regulatory protein, arsR family AS54_5627 PF17209 Hfq protein AS54_563 PF00324 Amino acid permease AS54_5630 PF14436 Bacterial EndoU nuclease AS54_5630 PF04740 LXG domain of WXG superfamily AS54_5635 PF02463 RecF/RecN/SMC N terminal domain AS54_5636 PF13361 UvrD-like helicase C-terminal domain AS54_5636 PF00580 UvrD/REP helicase N-terminal domain AS54_5637 PF00589 Phage integrase family AS54_5639 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AS54_564 PF07687 Peptidase dimerisation domain AS54_564 PF01546 Peptidase family M20/M25/M40 AS54_5640 PF01609 Transposase DDE domain AS54_5642 PF13276 HTH-like domain AS54_5642 PF13333 Integrase core domain AS54_5642 PF00665 Integrase core domain AS54_5645 PF13333 Integrase core domain AS54_5645 PF00665 Integrase core domain AS54_5645 PF13276 HTH-like domain AS54_5647 PF04740 LXG domain of WXG superfamily AS54_5647 PF14436 Bacterial EndoU nuclease AS54_5655 PF00589 Phage integrase family AS54_5655 PF02899 Phage integrase, N-terminal SAM-like domain AS54_5657 PF18277 AbrB C-terminal domain AS54_5657 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS54_5662 PF09156 Anthrax toxin lethal factor, middle domain AS54_5662 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AS54_5666 PF01022 Bacterial regulatory protein, arsR family AS54_5667 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 AS54_5667 PF07691 PA14 domain AS54_5667 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain AS54_5667 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 AS54_569 PF04960 Glutaminase AS54_57 PF00924 Mechanosensitive ion channel AS54_570 PF02378 Phosphotransferase system, EIIC AS54_570 PF00367 phosphotransferase system, EIIB AS54_571 PF00144 Beta-lactamase AS54_574 PF00535 Glycosyl transferase family 2 AS54_575 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS54_575 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS54_575 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS54_576 PF01370 NAD dependent epimerase/dehydratase family AS54_576 PF00551 Formyl transferase AS54_576 PF02911 Formyl transferase, C-terminal domain AS54_577 PF00535 Glycosyl transferase family 2 AS54_578 PF02901 Pyruvate formate lyase-like AS54_578 PF01228 Glycine radical AS54_579 PF04055 Radical SAM superfamily AS54_58 PF06866 Protein of unknown function (DUF1256) AS54_580 PF04101 Glycosyltransferase family 28 C-terminal domain AS54_580 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AS54_583 PF01979 Amidohydrolase family AS54_584 PF08338 Domain of unknown function (DUF1731) AS54_584 PF01370 NAD dependent epimerase/dehydratase family AS54_585 PF02631 RecX family AS54_588 PF08176 Small acid-soluble spore protein K family AS54_589 PF14043 WVELL protein AS54_59 PF02195 ParB-like nuclease domain AS54_59 PF17762 HTH domain found in ParB protein AS54_590 PF04307 LexA-binding, inner membrane-associated putative hydrolase AS54_591 PF14815 NUDIX domain AS54_591 PF00730 HhH-GPD superfamily base excision DNA repair protein AS54_593 PF04259 Small, acid-soluble spore protein, gamma-type AS54_595 PF14182 YgaB-like protein AS54_596 PF04167 Protein of unknown function (DUF402) AS54_597 PF00005 ABC transporter AS54_597 PF00664 ABC transporter transmembrane region AS54_598 PF06081 Aromatic acid exporter family member 1 AS54_599 PF00310 Glutamine amidotransferases class-II AS54_599 PF04898 Glutamate synthase central domain AS54_599 PF01493 GXGXG motif AS54_599 PF01645 Conserved region in glutamate synthase AS54_6 PF00535 Glycosyl transferase family 2 AS54_60 PF13614 AAA domain AS54_600 PF00202 Aminotransferase class-III AS54_601 PF00005 ABC transporter AS54_604 PF07885 Ion channel AS54_605 PF00578 AhpC/TSA family AS54_606 PF01475 Ferric uptake regulator family AS54_607 PF11023 Zinc-ribbon containing domain AS54_61 PF17762 HTH domain found in ParB protein AS54_61 PF02195 ParB-like nuclease domain AS54_62 PF02527 rRNA small subunit methyltransferase G AS54_628 PF01709 Transcriptional regulator AS54_629 PF13344 Haloacid dehalogenase-like hydrolase AS54_629 PF00293 NUDIX domain AS54_63 PF01134 Glucose inhibited division protein A AS54_63 PF13932 GidA associated domain AS54_630 PF00912 Transglycosylase AS54_630 PF00905 Penicillin binding protein transpeptidase domain AS54_631 PF13462 Thioredoxin AS54_633 PF08331 Domain of unknown function (DUF1730) AS54_634 PF12671 Putative amidase domain AS54_635 PF00588 SpoU rRNA Methylase family AS54_636 PF00990 Diguanylate cyclase, GGDEF domain AS54_636 PF03707 Bacterial signalling protein N terminal repeat AS54_636 PF00563 EAL domain AS54_638 PF08298 PrkA AAA domain AS54_638 PF06798 PrkA serine protein kinase C-terminal domain AS54_639 PF04285 Protein of unknown function (DUF444) AS54_64 PF10396 GTP-binding protein TrmE N-terminus AS54_64 PF01926 50S ribosome-binding GTPase AS54_64 PF12631 MnmE helical domain AS54_641 PF02028 BCCT, betaine/carnitine/choline family transporter AS54_642 PF01752 Collagenase AS54_642 PF18496 Collagenase G catalytic helper subdomain AS54_642 PF08453 Peptidase family M9 N-terminal AS54_644 PF15975 Flotillin AS54_644 PF01145 SPFH domain / Band 7 family AS54_645 PF02743 Cache domain AS54_645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_645 PF00672 HAMP domain AS54_646 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS54_646 PF00989 PAS fold AS54_646 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_646 PF17203 Single cache domain 3 AS54_647 PF00072 Response regulator receiver domain AS54_647 PF12431 Transcriptional regulator AS54_648 PF03600 Citrate transporter AS54_65 PF14804 Jag N-terminus AS54_65 PF01424 R3H domain AS54_652 PF00149 Calcineurin-like phosphoesterase AS54_653 PF00072 Response regulator receiver domain AS54_653 PF00486 Transcriptional regulatory protein, C terminal AS54_654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_654 PF00512 His Kinase A (phospho-acceptor) domain AS54_656 PF13529 Peptidase_C39 like family AS54_657 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_657 PF00672 HAMP domain AS54_657 PF02743 Cache domain AS54_658 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS54_658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_658 PF00989 PAS fold AS54_658 PF17203 Single cache domain 3 AS54_659 PF00072 Response regulator receiver domain AS54_66 PF02096 60Kd inner membrane protein AS54_660 PF03390 2-hydroxycarboxylate transporter family AS54_661 PF00390 Malic enzyme, N-terminal domain AS54_661 PF03949 Malic enzyme, NAD binding domain AS54_663 PF00892 EamA-like transporter family AS54_664 PF00392 Bacterial regulatory proteins, gntR family AS54_664 PF00155 Aminotransferase class I and II AS54_666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_666 PF18698 Histidine kinase sensor domain AS54_666 PF00512 His Kinase A (phospho-acceptor) domain AS54_666 PF00989 PAS fold AS54_666 PF00672 HAMP domain AS54_667 PF00486 Transcriptional regulatory protein, C terminal AS54_667 PF00072 Response regulator receiver domain AS54_669 PF13508 Acetyltransferase (GNAT) domain AS54_669 PF00583 Acetyltransferase (GNAT) family AS54_67 PF00825 Ribonuclease P AS54_670 PF02634 FdhD/NarQ family AS54_671 PF00037 4Fe-4S binding domain AS54_671 PF00384 Molybdopterin oxidoreductase AS54_671 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AS54_671 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS54_671 PF01568 Molydopterin dinucleotide binding domain AS54_672 PF07849 Protein of unknown function (DUF1641) AS54_674 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS54_674 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AS54_675 PF13520 Amino acid permease AS54_676 PF01022 Bacterial regulatory protein, arsR family AS54_677 PF00403 Heavy-metal-associated domain AS54_678 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AS54_678 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AS54_678 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AS54_68 PF00468 Ribosomal protein L34 AS54_681 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS54_681 PF01447 Thermolysin metallopeptidase, catalytic domain AS54_681 PF03413 Peptidase propeptide and YPEB domain AS54_681 PF07504 Fungalysin/Thermolysin Propeptide Motif AS54_685 PF04294 VanW like protein AS54_686 PF03816 Cell envelope-related transcriptional attenuator domain AS54_687 PF07662 Na+ dependent nucleoside transporter C-terminus AS54_687 PF01773 Na+ dependent nucleoside transporter N-terminus AS54_688 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS54_689 PF03471 Transporter associated domain AS54_689 PF00571 CBS domain AS54_689 PF01595 Cyclin M transmembrane N-terminal domain AS54_69 PF11638 DnaA N-terminal domain AS54_69 PF00308 Bacterial dnaA protein AS54_69 PF08299 Bacterial dnaA protein helix-turn-helix AS54_690 PF00206 Lyase AS54_690 PF10415 Fumarase C C-terminus AS54_691 PF02652 L-lactate permease AS54_692 PF01022 Bacterial regulatory protein, arsR family AS54_693 PF13276 HTH-like domain AS54_693 PF00665 Integrase core domain AS54_693 PF13333 Integrase core domain AS54_695 PF08141 Small acid-soluble spore protein H family AS54_696 PF00854 POT family AS54_697 PF01497 Periplasmic binding protein AS54_698 PF01032 FecCD transport family AS54_699 PF01032 FecCD transport family AS54_7 PF12848 ABC transporter AS54_7 PF00005 ABC transporter AS54_70 PF02768 DNA polymerase III beta subunit, C-terminal domain AS54_70 PF02767 DNA polymerase III beta subunit, central domain AS54_70 PF00712 DNA polymerase III beta subunit, N-terminal domain AS54_700 PF00005 ABC transporter AS54_701 PF08241 Methyltransferase domain AS54_702 PF00155 Aminotransferase class I and II AS54_703 PF01370 NAD dependent epimerase/dehydratase family AS54_704 PF00156 Phosphoribosyl transferase domain AS54_705 PF00293 NUDIX domain AS54_705 PF13344 Haloacid dehalogenase-like hydrolase AS54_706 PF00092 von Willebrand factor type A domain AS54_707 PF07728 AAA domain (dynein-related subfamily) AS54_708 PF13396 Phospholipase_D-nuclease N-terminal AS54_708 PF13091 PLD-like domain AS54_712 PF13520 Amino acid permease AS54_713 PF07702 UTRA domain AS54_713 PF00392 Bacterial regulatory proteins, gntR family AS54_714 PF00367 phosphotransferase system, EIIB AS54_714 PF02378 Phosphotransferase system, EIIC AS54_715 PF00128 Alpha amylase, catalytic domain AS54_715 PF16657 Maltogenic Amylase, C-terminal domain AS54_718 PF03323 Bacillus/Clostridium GerA spore germination protein AS54_719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_719 PF07730 Histidine kinase AS54_719 PF13492 GAF domain AS54_72 PF02463 RecF/RecN/SMC N terminal domain AS54_720 PF00196 Bacterial regulatory proteins, luxR family AS54_720 PF00072 Response regulator receiver domain AS54_721 PF00082 Subtilase family AS54_721 PF02225 PA domain AS54_721 PF13860 FlgD Ig-like domain AS54_721 PF05922 Peptidase inhibitor I9 AS54_722 PF12389 Camelysin metallo-endopeptidase AS54_724 PF01636 Phosphotransferase enzyme family AS54_725 PF01235 Sodium:alanine symporter family AS54_726 PF00005 ABC transporter AS54_727 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS54_728 PF00528 Binding-protein-dependent transport system inner membrane component AS54_729 PF00528 Binding-protein-dependent transport system inner membrane component AS54_73 PF00204 DNA gyrase B AS54_73 PF01751 Toprim domain AS54_73 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_73 PF00986 DNA gyrase B subunit, carboxyl terminus AS54_730 PF00324 Amino acid permease AS54_735 PF13280 WYL domain AS54_735 PF08279 HTH domain AS54_736 PF01872 RibD C-terminal domain AS54_737 PF00672 HAMP domain AS54_737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS54_737 PF18698 Histidine kinase sensor domain AS54_737 PF00512 His Kinase A (phospho-acceptor) domain AS54_737 PF00989 PAS fold AS54_738 PF00072 Response regulator receiver domain AS54_738 PF00486 Transcriptional regulatory protein, C terminal AS54_74 PF00521 DNA gyrase/topoisomerase IV, subunit A AS54_74 PF03989 DNA gyrase C-terminal domain, beta-propeller AS54_740 PF01740 STAS domain AS54_740 PF00916 Sulfate permease family AS54_741 PF00582 Universal stress protein family AS54_743 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_744 PF00528 Binding-protein-dependent transport system inner membrane component AS54_745 PF00528 Binding-protein-dependent transport system inner membrane component AS54_746 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_746 PF00005 ABC transporter AS54_747 PF00005 ABC transporter AS54_747 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_748 PF07690 Major Facilitator Superfamily AS54_749 PF01047 MarR family AS54_750 PF07690 Major Facilitator Superfamily AS54_751 PF00356 Bacterial regulatory proteins, lacI family AS54_752 PF00294 pfkB family carbohydrate kinase AS54_753 PF05025 RbsD / FucU transport protein family AS54_754 PF00005 ABC transporter AS54_755 PF02653 Branched-chain amino acid transport system / permease component AS54_756 PF13407 Periplasmic binding protein domain AS54_757 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS54_758 PF05547 Immune inhibitor A peptidase M6 AS54_760 PF08240 Alcohol dehydrogenase GroES-like domain AS54_760 PF00107 Zinc-binding dehydrogenase AS54_762 PF00882 Zinc dependent phospholipase C AS54_763 PF03372 Endonuclease/Exonuclease/phosphatase family AS54_768 PF02673 Bacitracin resistance protein BacA AS54_769 PF00672 HAMP domain AS54_769 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS54_769 PF02743 Cache domain AS54_770 PF01476 LysM domain AS54_770 PF06725 3D domain AS54_771 PF01381 Helix-turn-helix AS54_773 PF04203 Sortase domain AS54_774 PF00854 POT family AS54_776 PF05525 Branched-chain amino acid transport protein AS54_779 PF00324 Amino acid permease AS54_780 PF00860 Permease family AS54_783 PF13673 Acetyltransferase (GNAT) domain AS54_785 PF02254 TrkA-N domain AS54_785 PF02080 TrkA-C domain AS54_785 PF00999 Sodium/hydrogen exchanger family AS54_787 PF00510 Cytochrome c oxidase subunit III AS54_788 PF00115 Cytochrome C and Quinol oxidase polypeptide I AS54_789 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AS54_790 PF13529 Peptidase_C39 like family AS54_791 PF07687 Peptidase dimerisation domain AS54_791 PF01546 Peptidase family M20/M25/M40 AS54_792 PF11755 Protein of unknown function (DUF3311) AS54_793 PF00474 Sodium:solute symporter family AS54_794 PF03323 Bacillus/Clostridium GerA spore germination protein AS54_795 PF03845 Spore germination protein AS54_796 PF05504 Spore germination B3/ GerAC like, C-terminal AS54_797 PF07664 Ferrous iron transport protein B C terminus AS54_797 PF17910 FeoB cytosolic helical domain AS54_797 PF02421 Ferrous iron transport protein B AS54_797 PF07670 Nucleoside recognition AS54_798 PF02421 Ferrous iron transport protein B AS54_798 PF07670 Nucleoside recognition AS54_798 PF17910 FeoB cytosolic helical domain AS54_798 PF07664 Ferrous iron transport protein B C terminus AS54_799 PF04023 FeoA domain AS54_799 PF07664 Ferrous iron transport protein B C terminus AS54_799 PF17910 FeoB cytosolic helical domain AS54_799 PF02421 Ferrous iron transport protein B AS54_799 PF07670 Nucleoside recognition AS54_800 PF12849 PBP superfamily domain AS54_801 PF00528 Binding-protein-dependent transport system inner membrane component AS54_802 PF00528 Binding-protein-dependent transport system inner membrane component AS54_804 PF00873 AcrB/AcrD/AcrF family AS54_81 PF14175 YaaC-like Protein AS54_82 PF00571 CBS domain AS54_82 PF00478 IMP dehydrogenase / GMP reductase domain AS54_829 PF00571 CBS domain AS54_83 PF07943 Penicillin-binding protein 5, C-terminal domain AS54_83 PF00768 D-alanyl-D-alanine carboxypeptidase AS54_832 PF08239 Bacterial SH3 domain AS54_832 PF00246 Zinc carboxypeptidase AS54_833 PF03070 TENA/THI-4/PQQC family AS54_834 PF00005 ABC transporter AS54_835 PF00528 Binding-protein-dependent transport system inner membrane component AS54_836 PF09084 NMT1/THI5 like AS54_837 PF02581 Thiamine monophosphate synthase AS54_838 PF01266 FAD dependent oxidoreductase AS54_839 PF02597 ThiS family AS54_84 PF01680 SOR/SNZ family AS54_840 PF05690 Thiazole biosynthesis protein ThiG AS54_841 PF00899 ThiF family AS54_842 PF08543 Phosphomethylpyrimidine kinase AS54_846 PF03814 Potassium-transporting ATPase A subunit AS54_848 PF02669 K+-transporting ATPase, c chain AS54_849 PF02702 Osmosensitive K+ channel His kinase sensor domain AS54_85 PF01174 SNO glutamine amidotransferase family AS54_850 PF07690 Major Facilitator Superfamily AS54_851 PF01047 MarR family AS54_856 PF00005 ABC transporter AS54_856 PF02687 FtsX-like permease family AS54_856 PF12704 MacB-like periplasmic core domain AS54_858 PF00860 Permease family AS54_86 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS54_86 PF02403 Seryl-tRNA synthetase N-terminal domain AS54_860 PF17969 L,D-transpeptidase C-terminal domain AS54_860 PF03734 L,D-transpeptidase catalytic domain AS54_862 PF00294 pfkB family carbohydrate kinase AS54_863 PF08244 Glycosyl hydrolases family 32 C terminal AS54_863 PF00251 Glycosyl hydrolases family 32 N-terminal domain AS54_864 PF00367 phosphotransferase system, EIIB AS54_864 PF02378 Phosphotransferase system, EIIC AS54_865 PF00356 Bacterial regulatory proteins, lacI family AS54_865 PF13407 Periplasmic binding protein domain AS54_867 PF00085 Thioredoxin AS54_868 PF02600 Disulfide bond formation protein DsbB AS54_869 PF14148 YhdB-like protein AS54_871 PF03845 Spore germination protein AS54_873 PF03323 Bacillus/Clostridium GerA spore germination protein AS54_875 PF00881 Nitroreductase family AS54_876 PF04293 SpoVR like protein AS54_877 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS54_877 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS54_878 PF00581 Rhodanese-like domain AS54_879 PF02583 Metal-sensitive transcriptional repressor AS54_880 PF01206 Sulfurtransferase TusA AS54_880 PF00581 Rhodanese-like domain AS54_881 PF00753 Metallo-beta-lactamase superfamily AS54_881 PF00581 Rhodanese-like domain AS54_882 PF01206 Sulfurtransferase TusA AS54_883 PF00581 Rhodanese-like domain AS54_885 PF13686 DsrE/DsrF/DrsH-like family AS54_886 PF01925 Sulfite exporter TauE/SafE AS54_888 PF03816 Cell envelope-related transcriptional attenuator domain AS54_889 PF08240 Alcohol dehydrogenase GroES-like domain AS54_889 PF00107 Zinc-binding dehydrogenase AS54_89 PF01712 Deoxynucleoside kinase AS54_890 PF02690 Na+/Pi-cotransporter AS54_891 PF07690 Major Facilitator Superfamily AS54_893 PF08279 HTH domain AS54_893 PF00874 PRD domain AS54_893 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS54_893 PF05043 Mga helix-turn-helix domain AS54_894 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS54_895 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS54_896 PF02378 Phosphotransferase system, EIIC AS54_899 PF06725 3D domain AS54_899 PF01476 LysM domain AS54_90 PF01712 Deoxynucleoside kinase AS54_900 PF12704 MacB-like periplasmic core domain AS54_900 PF02687 FtsX-like permease family AS54_901 PF00005 ABC transporter AS54_903 PF09529 Integral membrane protein (intg_mem_TP0381) AS54_906 PF02687 FtsX-like permease family AS54_907 PF05525 Branched-chain amino acid transport protein AS54_908 PF05067 Manganese containing catalase AS54_909 PF12652 CotJB protein AS54_91 PF00857 Isochorismatase family AS54_910 PF11007 Spore coat associated protein JA (CotJA) AS54_913 PF02735 Ku70/Ku80 beta-barrel domain AS54_915 PF09335 SNARE associated Golgi protein AS54_92 PF14437 MafB19-like deaminase AS54_922 PF13520 Amino acid permease AS54_923 PF00999 Sodium/hydrogen exchanger family AS54_925 PF01380 SIS domain AS54_925 PF01418 Helix-turn-helix domain, rpiR family AS54_926 PF01380 SIS domain AS54_927 PF02378 Phosphotransferase system, EIIC AS54_927 PF00367 phosphotransferase system, EIIB AS54_93 PF12169 DNA polymerase III subunits gamma and tau domain III AS54_930 PF07681 DoxX AS54_933 PF00892 EamA-like transporter family AS54_934 PF01037 Lrp/AsnC ligand binding domain AS54_936 PF00893 Small Multidrug Resistance protein AS54_937 PF00893 Small Multidrug Resistance protein AS54_938 PF17934 Tetracyclin repressor-like, C-terminal domain AS54_938 PF00440 Bacterial regulatory proteins, tetR family AS54_939 PF07690 Major Facilitator Superfamily AS54_94 PF02575 YbaB/EbfC DNA-binding family AS54_940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_940 PF12793 Sugar transport-related sRNA regulator N-term AS54_941 PF07690 Major Facilitator Superfamily AS54_943 PF01965 DJ-1/PfpI family AS54_944 PF00199 Catalase AS54_944 PF06628 Catalase-related immune-responsive AS54_944 PF18011 C-terminal domain found in long catalases AS54_946 PF13520 Amino acid permease AS54_947 PF01177 Asp/Glu/Hydantoin racemase AS54_949 PF00171 Aldehyde dehydrogenase family AS54_95 PF13662 Toprim domain AS54_95 PF02132 RecR protein AS54_950 PF00005 ABC transporter AS54_950 PF00664 ABC transporter transmembrane region AS54_951 PF00005 ABC transporter AS54_951 PF00664 ABC transporter transmembrane region AS54_952 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS54_953 PF00528 Binding-protein-dependent transport system inner membrane component AS54_954 PF00005 ABC transporter AS54_955 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS54_957 PF14398 YheC/D like ATP-grasp AS54_959 PF04286 Protein of unknown function (DUF445) AS54_96 PF10704 Protein of unknown function (DUF2508) AS54_960 PF06133 Control of competence regulator ComK, YlbF/YmcA AS54_963 PF00205 Thiamine pyrophosphate enzyme, central domain AS54_963 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS54_963 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS54_964 PF03306 Alpha-acetolactate decarboxylase AS54_965 PF02245 Methylpurine-DNA glycosylase (MPG) AS54_967 PF01510 N-acetylmuramoyl-L-alanine amidase AS54_967 PF01471 Putative peptidoglycan binding domain AS54_968 PF04055 Radical SAM superfamily AS54_969 PF00501 AMP-binding enzyme AS54_969 PF13193 AMP-binding enzyme C-terminal domain AS54_97 PF07441 SigmaK-factor processing regulatory protein BofA AS54_971 PF01740 STAS domain AS54_971 PF00916 Sulfate permease family AS54_976 PF07516 SecA Wing and Scaffold domain AS54_976 PF01043 SecA preprotein cross-linking domain AS54_976 PF07517 SecA DEAD-like domain AS54_977 PF01943 Polysaccharide biosynthesis protein AS54_977 PF14667 Polysaccharide biosynthesis C-terminal domain AS54_979 PF02368 Bacterial Ig-like domain (group 2) AS54_979 PF00395 S-layer homology domain AS54_979 PF13205 Bacterial Ig-like domain AS54_980 PF00395 S-layer homology domain AS54_982 PF03062 MBOAT, membrane-bound O-acyltransferase family AS54_984 PF00378 Enoyl-CoA hydratase/isomerase AS54_988 PF05343 M42 glutamyl aminopeptidase AS54_989 PF00395 S-layer homology domain AS54_989 PF01520 N-acetylmuramoyl-L-alanine amidase AS54_991 PF11121 Protein of unknown function (DUF2639) AS54_992 PF05544 Proline racemase AS54_993 PF02423 Ornithine cyclodeaminase/mu-crystallin family AS54_995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS54_996 PF00528 Binding-protein-dependent transport system inner membrane component AS54_997 PF00528 Binding-protein-dependent transport system inner membrane component AS54_997 PF12911 N-terminal TM domain of oligopeptide transport permease C AS54_998 PF00005 ABC transporter AS54_998 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS54_999 PF00005 ABC transporter AS54_999 PF08352 Oligopeptide/dipeptide transporter, C-terminal region