AS54_1006 SM00091 PAS domain AS54_1006 SM00387 Histidine kinase-like ATPases AS54_1007 SM00448 cheY-homologous receiver domain AS54_1020 SM00530 Helix-turn-helix XRE-family like proteins AS54_1040 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_1049 SM01120 AS54_1049 AS54_1056 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_1060 SM00460 Transglutaminase/protease-like homologues AS54_1073 SM00331 Sigma factor PP2C-like phosphatases AS54_1073 SM00448 cheY-homologous receiver domain AS54_1074 SM00138 Methyltransferase, chemotaxis proteins AS54_1075 SM00387 Histidine kinase-like ATPases AS54_1075 SM00388 His Kinase A (phosphoacceptor) domain AS54_1075 SM00448 cheY-homologous receiver domain AS54_1082 SM00829 Enoylreductase AS54_1090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_1097 SM00028 Tetratricopeptide repeats AS54_1102 SM00530 Helix-turn-helix XRE-family like proteins AS54_1114 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_1123 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_1126 SM00382 ATPases associated with a variety of cellular activities AS54_113 SM00966 SpoVT / AbrB like domain AS54_1153 SM00422 helix_turn_helix, mercury resistance AS54_116 SM00493 AS54_116 AS54_117 SM00650 Ribosomal RNA adenine dimethylases AS54_1179 SM00354 helix_turn _helix lactose operon repressor AS54_1181 SM00849 Metallo-beta-lactamase superfamily AS54_1191 SM00860 SMI1 / KNR4 family AS54_1198 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_1201 SM00342 helix_turn_helix, arabinose operon control protein AS54_1201 SM00871 Bacterial transcription activator, effector binding domain AS54_1202 SM00387 Histidine kinase-like ATPases AS54_1202 SM00388 His Kinase A (phosphoacceptor) domain AS54_1203 SM00448 cheY-homologous receiver domain AS54_1203 SM00862 Transcriptional regulatory protein, C terminal AS54_1215 SM00357 Cold shock protein domain AS54_1239 SM01060 AS54_1239 AS54_1241 SM00642 Alpha-amylase domain AS54_1242 SM00530 Helix-turn-helix XRE-family like proteins AS54_1244 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_1253 SM00382 ATPases associated with a variety of cellular activities AS54_1253 SM01086 C-terminal, D2-small domain, of ClpB protein AS54_1259 SM00825 Beta-ketoacyl synthase AS54_126 SM01400 AS54_126 AS54_1267 SM00382 ATPases associated with a variety of cellular activities AS54_1268 SM00382 ATPases associated with a variety of cellular activities AS54_1275 SM00155 Phospholipase D. Active site motifs. AS54_1281 SM01118 AS54_1281 AS54_1283 SM00954 Region found in RelA / SpoT proteins AS54_129 SM00487 DEAD-like helicases superfamily AS54_129 SM00490 helicase superfamily c-terminal domain AS54_129 SM00982 AS54_129 AS54_129 SM01058 CarD-like/TRCF domain AS54_130 SM00966 SpoVT / AbrB like domain AS54_1313 SM00635 Bacterial Ig-like domain 2 AS54_133 SM00363 S4 RNA-binding domain AS54_1334 SM00861 Transketolase, pyrimidine binding domain AS54_1335 SM00530 Helix-turn-helix XRE-family like proteins AS54_1362 SM00382 ATPases associated with a variety of cellular activities AS54_137 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_1373 SM00530 Helix-turn-helix XRE-family like proteins AS54_1376 SM00382 ATPases associated with a variety of cellular activities AS54_1380 SM00014 Acid phosphatase homologues AS54_1390 SM00448 cheY-homologous receiver domain AS54_1390 SM00862 Transcriptional regulatory protein, C terminal AS54_1391 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_1391 SM00387 Histidine kinase-like ATPases AS54_1391 SM00388 His Kinase A (phosphoacceptor) domain AS54_1392 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_1392 SM00895 AS54_1392 AS54_140 SM00331 Sigma factor PP2C-like phosphatases AS54_140 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AS54_1406 SM00822 AS54_1406 AS54_141 SM00977 TilS substrate C-terminal domain AS54_1413 SM00382 ATPases associated with a variety of cellular activities AS54_1418 SM00420 helix_turn_helix, Deoxyribose operon repressor AS54_1418 SM01134 AS54_1418 AS54_1420 SM00365 Leucine-rich repeat, SDS22-like subfamily AS54_1420 SM00369 Leucine-rich repeats, typical (most populated) subfamily AS54_1420 SM00725 NEAr Transporter domain AS54_1421 SM01007 Class II Aldolase and Adducin N-terminal domain AS54_1425 SM00387 Histidine kinase-like ATPases AS54_1425 SM00388 His Kinase A (phosphoacceptor) domain AS54_1426 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_143 SM00382 ATPases associated with a variety of cellular activities AS54_1430 SM00387 Histidine kinase-like ATPases AS54_1430 SM00388 His Kinase A (phosphoacceptor) domain AS54_1443 SM00507 HNH nucleases AS54_1446 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_1447 SM00382 ATPases associated with a variety of cellular activities AS54_1449 SM00382 ATPases associated with a variety of cellular activities AS54_1453 SM00344 helix_turn_helix ASNC type AS54_1477 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_1491 SM00917 LeuA allosteric (dimerisation) domain AS54_1492 SM01329 AS54_1492 AS54_151 SM00905 Dihydroneopterin aldolase AS54_153 SM00530 Helix-turn-helix XRE-family like proteins AS54_1530 SM00387 Histidine kinase-like ATPases AS54_1531 SM00421 helix_turn_helix, Lux Regulon AS54_1531 SM00448 cheY-homologous receiver domain AS54_1549 SM00091 PAS domain AS54_1549 SM00387 Histidine kinase-like ATPases AS54_1549 SM00388 His Kinase A (phosphoacceptor) domain AS54_1553 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_1553 SM00387 Histidine kinase-like ATPases AS54_1553 SM00388 His Kinase A (phosphoacceptor) domain AS54_1564 SM00363 S4 RNA-binding domain AS54_1568 SM00448 cheY-homologous receiver domain AS54_1568 SM00862 Transcriptional regulatory protein, C terminal AS54_1569 SM00091 PAS domain AS54_1569 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_1569 SM00387 Histidine kinase-like ATPases AS54_1569 SM00388 His Kinase A (phosphoacceptor) domain AS54_1571 SM00257 Lysin motif AS54_1576 SM00487 DEAD-like helicases superfamily AS54_1576 SM00490 helicase superfamily c-terminal domain AS54_1578 SM00257 Lysin motif AS54_1580 SM00422 helix_turn_helix, mercury resistance AS54_1582 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS54_1585 SM00644 AS54_1585 AS54_1587 SM00870 AS54_1587 AS54_1590 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_1591 SM01240 AS54_1591 AS54_1602 SM00411 bacterial (prokaryotic) histone like domain AS54_1607 SM00562 AS54_1607 AS54_1611 SM00028 Tetratricopeptide repeats AS54_1612 SM00914 AS54_1612 AS54_1621 SM00986 Uracil DNA glycosylase superfamily AS54_1621 SM00987 UreE urease accessory protein, C-terminal domain AS54_1625 SM00851 MGS-like domain AS54_1634 SM00479 AS54_1634 AS54_1634 SM00491 AS54_1634 AS54_1639 SM00478 endonuclease III AS54_1639 SM00525 AS54_1639 AS54_1641 SM00060 Fibronectin type 3 domain AS54_1652 SM00981 AS54_1652 AS54_1654 SM00491 AS54_1654 AS54_1667 SM00450 Rhodanese Homology Domain AS54_1674 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AS54_1674 SM00475 5'-3' exonuclease AS54_1687 SM00357 Cold shock protein domain AS54_1697 SM00849 Metallo-beta-lactamase superfamily AS54_1698 SM00422 helix_turn_helix, mercury resistance AS54_1698 SM00871 Bacterial transcription activator, effector binding domain AS54_1716 SM00448 cheY-homologous receiver domain AS54_1717 SM00073 Histidine Phosphotransfer domain AS54_1717 SM00260 Two component signalling adaptor domain AS54_1717 SM00387 Histidine kinase-like ATPases AS54_1717 SM01231 AS54_1717 AS54_1721 SM00138 Methyltransferase, chemotaxis proteins AS54_1736 SM00382 ATPases associated with a variety of cellular activities AS54_1743 SM00260 Two component signalling adaptor domain AS54_1743 SM00448 cheY-homologous receiver domain AS54_1757 SM00382 ATPases associated with a variety of cellular activities AS54_1757 SM00962 SRP54-type protein, GTPase domain AS54_1759 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AS54_176 SM00382 ATPases associated with a variety of cellular activities AS54_176 SM01086 C-terminal, D2-small domain, of ClpB protein AS54_177 SM00382 ATPases associated with a variety of cellular activities AS54_1770 SM00530 Helix-turn-helix XRE-family like proteins AS54_1774 SM00382 ATPases associated with a variety of cellular activities AS54_1777 SM00849 Metallo-beta-lactamase superfamily AS54_1777 SM01027 Beta-Casp domain AS54_1781 SM00835 Cupin AS54_1784 SM00855 Phosphoglycerate mutase family AS54_1788 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_179 SM00670 Large family of predicted nucleotide-binding domains AS54_1796 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_1796 SM00895 AS54_1796 AS54_1798 SM00833 Cobalamin synthesis protein cobW C-terminal domain AS54_18 SM00448 cheY-homologous receiver domain AS54_18 SM00850 LytTr DNA-binding domain AS54_1814 SM00530 Helix-turn-helix XRE-family like proteins AS54_1822 SM00421 helix_turn_helix, Lux Regulon AS54_1822 SM00448 cheY-homologous receiver domain AS54_1824 SM00382 ATPases associated with a variety of cellular activities AS54_1827 SM00155 Phospholipase D. Active site motifs. AS54_1831 SM00919 Malic enzyme, NAD binding domain AS54_1831 SM01274 AS54_1831 AS54_1832 SM00387 Histidine kinase-like ATPases AS54_1833 SM00448 cheY-homologous receiver domain AS54_1834 SM00487 DEAD-like helicases superfamily AS54_1834 SM00490 helicase superfamily c-terminal domain AS54_1838 SM00530 Helix-turn-helix XRE-family like proteins AS54_184 SM00840 AS54_184 AS54_1845 SM00646 AS54_1845 AS54_1846 SM00047 Lysozyme subfamily 2 AS54_185 SM00535 Ribonuclease III family AS54_186 SM00967 RNA 2'-O ribose methyltransferase substrate binding AS54_1868 SM00422 helix_turn_helix, mercury resistance AS54_188 SM00421 helix_turn_helix, Lux Regulon AS54_1882 SM00854 Bacterial capsule synthesis protein PGA_cap AS54_1890 SM00850 LytTr DNA-binding domain AS54_1896 SM00860 SMI1 / KNR4 family AS54_19 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AS54_19 SM00387 Histidine kinase-like ATPases AS54_190 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AS54_1900 SM00530 Helix-turn-helix XRE-family like proteins AS54_1904 SM00530 Helix-turn-helix XRE-family like proteins AS54_191 SM00649 Ribosomal protein L11/L12 AS54_1938 SM00507 HNH nucleases AS54_1957 SM00646 AS54_1957 AS54_1965 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_1967 SM00448 cheY-homologous receiver domain AS54_1967 SM00862 Transcriptional regulatory protein, C terminal AS54_1968 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_1968 SM00387 Histidine kinase-like ATPases AS54_1968 SM00388 His Kinase A (phosphoacceptor) domain AS54_197 SM00663 RNA polymerase I subunit A N-terminus AS54_1972 SM00450 Rhodanese Homology Domain AS54_1982 SM01133 AS54_1982 AS54_1984 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AS54_1989 SM01011 Aminopeptidase P, N-terminal domain AS54_1991 SM00287 Bacterial SH3 domain homologues AS54_1993 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AS54_1993 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AS54_1993 SM00493 AS54_1993 AS54_2 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_201 SM00838 Elongation factor G C-terminus AS54_201 SM00889 Elongation factor G, domain IV AS54_2012 SM00833 Cobalamin synthesis protein cobW C-terminal domain AS54_2019 SM00382 ATPases associated with a variety of cellular activities AS54_2020 SM00382 ATPases associated with a variety of cellular activities AS54_2027 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_203 SM01403 AS54_203 AS54_2031 SM00382 ATPases associated with a variety of cellular activities AS54_2032 SM00382 ATPases associated with a variety of cellular activities AS54_2038 SM00287 Bacterial SH3 domain homologues AS54_2040 SM00382 ATPases associated with a variety of cellular activities AS54_2041 SM00448 cheY-homologous receiver domain AS54_2041 SM00862 Transcriptional regulatory protein, C terminal AS54_2042 SM00387 Histidine kinase-like ATPases AS54_2042 SM00388 His Kinase A (phosphoacceptor) domain AS54_2057 SM00448 cheY-homologous receiver domain AS54_2057 SM00862 Transcriptional regulatory protein, C terminal AS54_2058 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_2058 SM00387 Histidine kinase-like ATPases AS54_2058 SM00388 His Kinase A (phosphoacceptor) domain AS54_207 SM01382 AS54_207 AS54_207 SM01383 AS54_207 AS54_2072 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_2077 SM00460 Transglutaminase/protease-like homologues AS54_2098 SM00857 Resolvase, N terminal domain AS54_210 SM00322 K homology RNA-binding domain AS54_2101 SM00966 SpoVT / AbrB like domain AS54_2103 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_2110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_2110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_2122 SM00833 Cobalamin synthesis protein cobW C-terminal domain AS54_2136 SM00855 Phosphoglycerate mutase family AS54_214 SM01374 AS54_214 AS54_2146 SM00155 Phospholipase D. Active site motifs. AS54_215 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AS54_2151 SM01091 Transporter associated domain AS54_2165 SM00244 prohibitin homologues AS54_2167 SM00346 helix_turn_helix isocitrate lyase regulation AS54_2174 SM00859 Semialdehyde dehydrogenase, NAD binding domain AS54_2178 SM00855 Phosphoglycerate mutase family AS54_2181 SM01005 Alanine racemase, C-terminal domain AS54_2187 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_2217 SM00487 DEAD-like helicases superfamily AS54_2217 SM00490 helicase superfamily c-terminal domain AS54_2221 SM00829 Enoylreductase AS54_2225 SM00849 Metallo-beta-lactamase superfamily AS54_2228 SM00460 Transglutaminase/protease-like homologues AS54_2233 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AS54_2237 SM00100 Cyclic nucleotide-monophosphate binding domain AS54_2237 SM00419 helix_turn_helix, cAMP Regulatory protein AS54_2238 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_2240 SM00852 Probable molybdopterin binding domain AS54_2252 SM00894 Excalibur calcium-binding domain AS54_227 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_2270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_2271 SM00382 ATPases associated with a variety of cellular activities AS54_2277 SM00567 E-Z type HEAT repeats AS54_2277 SM00932 Scaffold protein Nfu/NifU N terminal AS54_2281 SM00836 DALR anticodon binding domain AS54_2281 SM01016 Arginyl tRNA synthetase N terminal dom AS54_2284 SM00028 Tetratricopeptide repeats AS54_2290 SM00327 von Willebrand factor (vWF) type A domain AS54_2293 SM00382 ATPases associated with a variety of cellular activities AS54_2295 SM00028 Tetratricopeptide repeats AS54_2300 SM00857 Resolvase, N terminal domain AS54_2307 SM00857 Resolvase, N terminal domain AS54_231 SM00662 RNA polymerases D AS54_2313 SM00448 cheY-homologous receiver domain AS54_2313 SM00862 Transcriptional regulatory protein, C terminal AS54_2314 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_2314 SM00387 Histidine kinase-like ATPases AS54_2314 SM00388 His Kinase A (phosphoacceptor) domain AS54_2329 SM00382 ATPases associated with a variety of cellular activities AS54_233 SM00382 ATPases associated with a variety of cellular activities AS54_234 SM00382 ATPases associated with a variety of cellular activities AS54_2342 SM00563 Phosphate acyltransferases AS54_2354 SM00014 Acid phosphatase homologues AS54_2364 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AS54_2365 SM00421 helix_turn_helix, Lux Regulon AS54_2365 SM00448 cheY-homologous receiver domain AS54_2367 SM00829 Enoylreductase AS54_2378 SM00382 ATPases associated with a variety of cellular activities AS54_2386 SM01091 Transporter associated domain AS54_2389 SM00387 Histidine kinase-like ATPases AS54_2389 SM00388 His Kinase A (phosphoacceptor) domain AS54_2392 SM00882 Coenzyme A transferase AS54_2393 SM00882 Coenzyme A transferase AS54_2396 SM00382 ATPases associated with a variety of cellular activities AS54_240 SM00646 AS54_240 AS54_2404 SM00219 Tyrosine kinase, catalytic domain AS54_2407 SM00014 Acid phosphatase homologues AS54_2415 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AS54_243 SM01251 AS54_243 AS54_2448 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_2455 SM00823 Phosphopantetheine attachment site AS54_2455 SM00824 Thioesterase AS54_2456 SM00923 MbtH-like protein AS54_2460 SM00411 bacterial (prokaryotic) histone like domain AS54_2468 SM00363 S4 RNA-binding domain AS54_2469 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AS54_2471 SM00382 ATPases associated with a variety of cellular activities AS54_2481 SM00849 Metallo-beta-lactamase superfamily AS54_2488 SM00849 Metallo-beta-lactamase superfamily AS54_2492 SM01059 Chloramphenicol acetyltransferase AS54_2497 SM00530 Helix-turn-helix XRE-family like proteins AS54_2506 SM00357 Cold shock protein domain AS54_2512 SM00859 Semialdehyde dehydrogenase, NAD binding domain AS54_2519 SM00382 ATPases associated with a variety of cellular activities AS54_2520 SM00382 ATPases associated with a variety of cellular activities AS54_2522 SM00646 AS54_2522 AS54_2524 SM00530 Helix-turn-helix XRE-family like proteins AS54_2529 SM00835 Cupin AS54_2530 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_2544 SM01207 AS54_2544 AS54_2550 SM00849 Metallo-beta-lactamase superfamily AS54_2553 SM00487 DEAD-like helicases superfamily AS54_2553 SM00490 helicase superfamily c-terminal domain AS54_2558 SM00382 ATPases associated with a variety of cellular activities AS54_2570 SM00110 Complement component C1q domain. AS54_2578 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_2579 SM00855 Phosphoglycerate mutase family AS54_2589 SM00936 Penicillin-binding protein 5, C-terminal domain AS54_2598 SM00354 helix_turn _helix lactose operon repressor AS54_2614 SM00530 Helix-turn-helix XRE-family like proteins AS54_2619 SM00646 AS54_2619 AS54_2622 SM00382 ATPases associated with a variety of cellular activities AS54_2623 SM00052 Putative diguanylate phosphodiesterase AS54_2623 SM00091 PAS domain AS54_2623 SM00267 diguanylate cyclase AS54_2625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_2625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_2625 SM00319 Homologues of the ligand binding domain of Tar AS54_2627 SM00450 Rhodanese Homology Domain AS54_2627 SM00849 Metallo-beta-lactamase superfamily AS54_2632 SM00878 Biotin carboxylase C-terminal domain AS54_2645 SM00387 Histidine kinase-like ATPases AS54_2645 SM00388 His Kinase A (phosphoacceptor) domain AS54_2646 SM00448 cheY-homologous receiver domain AS54_2646 SM00862 Transcriptional regulatory protein, C terminal AS54_2656 SM00382 ATPases associated with a variety of cellular activities AS54_266 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_266 SM00895 AS54_266 AS54_2660 SM00422 helix_turn_helix, mercury resistance AS54_2660 SM00871 Bacterial transcription activator, effector binding domain AS54_2670 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_2684 SM00448 cheY-homologous receiver domain AS54_2684 SM00862 Transcriptional regulatory protein, C terminal AS54_2685 SM00387 Histidine kinase-like ATPases AS54_2687 SM00382 ATPases associated with a variety of cellular activities AS54_269 SM01350 AS54_269 AS54_2691 SM00382 ATPases associated with a variety of cellular activities AS54_2697 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_2698 SM01209 AS54_2698 AS54_2724 SM00091 PAS domain AS54_2724 SM00387 Histidine kinase-like ATPases AS54_2724 SM00388 His Kinase A (phosphoacceptor) domain AS54_2729 SM00382 ATPases associated with a variety of cellular activities AS54_2732 SM00387 Histidine kinase-like ATPases AS54_2732 SM00388 His Kinase A (phosphoacceptor) domain AS54_2735 SM00829 Enoylreductase AS54_2736 SM00014 Acid phosphatase homologues AS54_2737 SM00740 AS54_2737 AS54_2749 SM00422 helix_turn_helix, mercury resistance AS54_2757 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_2767 SM00480 DNA polymerase III beta subunit AS54_2773 SM00855 Phosphoglycerate mutase family AS54_278 SM00382 ATPases associated with a variety of cellular activities AS54_278 SM00930 AS54_278 AS54_2788 SM00465 GIY-YIG type nucleases (URI domain) AS54_280 SM00829 Enoylreductase AS54_2802 SM00014 Acid phosphatase homologues AS54_2803 SM00642 Alpha-amylase domain AS54_2807 SM00871 Bacterial transcription activator, effector binding domain AS54_2813 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_2835 SM00382 ATPases associated with a variety of cellular activities AS54_2839 SM00420 helix_turn_helix, Deoxyribose operon repressor AS54_2839 SM01134 AS54_2839 AS54_2848 SM00861 Transketolase, pyrimidine binding domain AS54_2861 SM00116 Domain in cystathionine beta-synthase and other proteins. AS54_2861 SM00382 ATPases associated with a variety of cellular activities AS54_2868 SM00060 Fibronectin type 3 domain AS54_2868 SM00495 Chitin-binding domain type 3 AS54_2874 SM00849 Metallo-beta-lactamase superfamily AS54_2888 SM00341 Helicase and RNase D C-terminal AS54_2888 SM00487 DEAD-like helicases superfamily AS54_2888 SM00490 helicase superfamily c-terminal domain AS54_2888 SM00956 AS54_2888 AS54_2896 SM01131 AS54_2896 AS54_290 SM00382 ATPases associated with a variety of cellular activities AS54_2902 SM01130 AS54_2902 AS54_2906 SM00091 PAS domain AS54_2906 SM00382 ATPases associated with a variety of cellular activities AS54_291 SM00382 ATPases associated with a variety of cellular activities AS54_2920 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AS54_2929 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AS54_2930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_2930 SM00387 Histidine kinase-like ATPases AS54_2930 SM00388 His Kinase A (phosphoacceptor) domain AS54_2931 SM00448 cheY-homologous receiver domain AS54_2931 SM00862 Transcriptional regulatory protein, C terminal AS54_2939 SM00344 helix_turn_helix ASNC type AS54_294 SM00342 helix_turn_helix, arabinose operon control protein AS54_2971 SM00382 ATPases associated with a variety of cellular activities AS54_2972 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_2983 SM00062 Bacterial periplasmic substrate-binding proteins AS54_2984 SM00382 ATPases associated with a variety of cellular activities AS54_2988 SM00028 Tetratricopeptide repeats AS54_30 SM00487 DEAD-like helicases superfamily AS54_30 SM00490 helicase superfamily c-terminal domain AS54_3006 SM00382 ATPases associated with a variety of cellular activities AS54_3015 SM00830 Chorismate mutase type II AS54_3023 SM00287 Bacterial SH3 domain homologues AS54_3028 SM00091 PAS domain AS54_3028 SM00382 ATPases associated with a variety of cellular activities AS54_3035 SM00382 ATPases associated with a variety of cellular activities AS54_3039 SM01133 AS54_3039 AS54_3046 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_3050 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AS54_3053 SM00346 helix_turn_helix isocitrate lyase regulation AS54_3057 SM00098 Alkaline phosphatase homologues AS54_3059 SM00530 Helix-turn-helix XRE-family like proteins AS54_3064 SM00850 LytTr DNA-binding domain AS54_3084 SM01060 AS54_3084 AS54_3090 SM00860 SMI1 / KNR4 family AS54_3094 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_3101 SM00382 ATPases associated with a variety of cellular activities AS54_3102 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_3103 SM00860 SMI1 / KNR4 family AS54_3105 SM00382 ATPases associated with a variety of cellular activities AS54_3110 SM00342 helix_turn_helix, arabinose operon control protein AS54_3110 SM00871 Bacterial transcription activator, effector binding domain AS54_3115 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_3120 SM00387 Histidine kinase-like ATPases AS54_3120 SM00388 His Kinase A (phosphoacceptor) domain AS54_3121 SM00448 cheY-homologous receiver domain AS54_3121 SM00862 Transcriptional regulatory protein, C terminal AS54_313 SM00563 Phosphate acyltransferases AS54_3133 SM00422 helix_turn_helix, mercury resistance AS54_3147 SM00797 Allophanate hydrolase subunit 2 AS54_3148 SM00796 Allophanate hydrolase subunit 1 AS54_3149 SM00346 helix_turn_helix isocitrate lyase regulation AS54_315 SM00354 helix_turn _helix lactose operon repressor AS54_3153 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_3166 SM00849 Metallo-beta-lactamase superfamily AS54_3193 SM00829 Enoylreductase AS54_32 SM01240 AS54_32 AS54_3213 SM00382 ATPases associated with a variety of cellular activities AS54_3216 SM00421 helix_turn_helix, Lux Regulon AS54_3216 SM00448 cheY-homologous receiver domain AS54_3219 SM00382 ATPases associated with a variety of cellular activities AS54_3223 SM00226 Low molecular weight phosphatase family AS54_3226 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_3229 SM00028 Tetratricopeptide repeats AS54_3240 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_3247 SM00448 cheY-homologous receiver domain AS54_3247 SM00862 Transcriptional regulatory protein, C terminal AS54_3248 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_3248 SM00387 Histidine kinase-like ATPases AS54_3248 SM00388 His Kinase A (phosphoacceptor) domain AS54_3258 SM00849 Metallo-beta-lactamase superfamily AS54_326 SM00382 ATPases associated with a variety of cellular activities AS54_3266 SM00422 helix_turn_helix, mercury resistance AS54_3273 SM00382 ATPases associated with a variety of cellular activities AS54_3275 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_3277 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_3277 SM00387 Histidine kinase-like ATPases AS54_3277 SM00388 His Kinase A (phosphoacceptor) domain AS54_3278 SM00448 cheY-homologous receiver domain AS54_3278 SM00862 Transcriptional regulatory protein, C terminal AS54_3280 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_3295 SM00450 Rhodanese Homology Domain AS54_3295 SM00849 Metallo-beta-lactamase superfamily AS54_3301 SM00387 Histidine kinase-like ATPases AS54_3301 SM00388 His Kinase A (phosphoacceptor) domain AS54_3302 SM00448 cheY-homologous receiver domain AS54_3302 SM00862 Transcriptional regulatory protein, C terminal AS54_3304 SM00860 SMI1 / KNR4 family AS54_331 SM00382 ATPases associated with a variety of cellular activities AS54_3312 SM00354 helix_turn _helix lactose operon repressor AS54_3313 SM00028 Tetratricopeptide repeats AS54_332 SM00382 ATPases associated with a variety of cellular activities AS54_3323 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_3323 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_3323 SM00319 Homologues of the ligand binding domain of Tar AS54_3332 SM00344 helix_turn_helix ASNC type AS54_3345 SM00342 helix_turn_helix, arabinose operon control protein AS54_3347 SM00860 SMI1 / KNR4 family AS54_3351 SM00287 Bacterial SH3 domain homologues AS54_3351 SM00644 AS54_3351 AS54_3364 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_3369 SM00382 ATPases associated with a variety of cellular activities AS54_3371 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_3385 SM00382 ATPases associated with a variety of cellular activities AS54_3394 SM00387 Histidine kinase-like ATPases AS54_3394 SM00421 helix_turn_helix, Lux Regulon AS54_3394 SM00448 cheY-homologous receiver domain AS54_3405 SM00382 ATPases associated with a variety of cellular activities AS54_3408 SM00530 Helix-turn-helix XRE-family like proteins AS54_3422 SM01266 AS54_3422 AS54_3424 SM00382 ATPases associated with a variety of cellular activities AS54_3435 SM00028 Tetratricopeptide repeats AS54_3440 SM01091 Transporter associated domain AS54_3441 SM00422 helix_turn_helix, mercury resistance AS54_3449 SM01350 AS54_3449 AS54_345 SM00487 DEAD-like helicases superfamily AS54_345 SM00490 helicase superfamily c-terminal domain AS54_3450 SM00861 Transketolase, pyrimidine binding domain AS54_3458 SM00914 AS54_3458 AS54_3462 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_3462 SM00866 AS54_3462 AS54_3466 SM00849 Metallo-beta-lactamase superfamily AS54_3479 SM00248 ankyrin repeats AS54_3480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_3481 SM00636 AS54_3481 AS54_3487 SM00871 Bacterial transcription activator, effector binding domain AS54_3495 SM00382 ATPases associated with a variety of cellular activities AS54_350 SM01005 Alanine racemase, C-terminal domain AS54_3500 SM00849 Metallo-beta-lactamase superfamily AS54_3501 SM00641 Glycosyl hydrolases family 25 AS54_3514 SM00849 Metallo-beta-lactamase superfamily AS54_3518 SM00829 Enoylreductase AS54_353 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_353 SM00732 Likely ribonuclease with RNase H fold. AS54_3539 SM00829 Enoylreductase AS54_354 SM00731 SprT homologues. AS54_3540 SM00855 Phosphoglycerate mutase family AS54_3542 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AS54_3542 SM00534 ATPase domain of DNA mismatch repair MUTS family AS54_3546 SM00642 Alpha-amylase domain AS54_3560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_3561 SM00829 Enoylreductase AS54_3563 SM00028 Tetratricopeptide repeats AS54_3577 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AS54_3587 SM00479 AS54_3587 AS54_3588 SM00357 Cold shock protein domain AS54_3609 SM00530 Helix-turn-helix XRE-family like proteins AS54_3633 SM00852 Probable molybdopterin binding domain AS54_3636 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_3640 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AS54_3640 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS54_3659 SM00382 ATPases associated with a variety of cellular activities AS54_3663 SM00434 DNA Topoisomerase IV AS54_3664 SM00387 Histidine kinase-like ATPases AS54_3664 SM00433 TopoisomeraseII AS54_3665 SM00881 CoA binding domain AS54_3666 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AS54_3667 SM00448 cheY-homologous receiver domain AS54_3667 SM00862 Transcriptional regulatory protein, C terminal AS54_3670 SM01207 AS54_3670 AS54_3673 SM00257 Lysin motif AS54_3673 SM00636 AS54_3673 AS54_3677 SM00479 AS54_3677 AS54_3680 SM00382 ATPases associated with a variety of cellular activities AS54_3689 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AS54_37 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AS54_3704 SM00644 AS54_3704 AS54_3704 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AS54_3705 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AS54_3708 SM00091 PAS domain AS54_3708 SM00387 Histidine kinase-like ATPases AS54_3708 SM00388 His Kinase A (phosphoacceptor) domain AS54_3714 SM01058 CarD-like/TRCF domain AS54_3733 SM00382 ATPases associated with a variety of cellular activities AS54_3742 SM00644 AS54_3742 AS54_3745 SM00382 ATPases associated with a variety of cellular activities AS54_3746 SM00382 ATPases associated with a variety of cellular activities AS54_3749 SM00861 Transketolase, pyrimidine binding domain AS54_3752 SM00382 ATPases associated with a variety of cellular activities AS54_3753 SM00062 Bacterial periplasmic substrate-binding proteins AS54_3756 SM00857 Resolvase, N terminal domain AS54_376 SM00382 ATPases associated with a variety of cellular activities AS54_3761 SM01230 AS54_3761 AS54_3762 SM00422 helix_turn_helix, mercury resistance AS54_3767 SM00382 ATPases associated with a variety of cellular activities AS54_377 SM00881 CoA binding domain AS54_3773 SM00287 Bacterial SH3 domain homologues AS54_3776 SM00420 helix_turn_helix, Deoxyribose operon repressor AS54_3776 SM01134 AS54_3776 AS54_3782 SM00636 AS54_3782 AS54_3786 SM00411 bacterial (prokaryotic) histone like domain AS54_3795 SM00382 ATPases associated with a variety of cellular activities AS54_38 SM00849 Metallo-beta-lactamase superfamily AS54_380 SM00883 Chaperonin 10 Kd subunit AS54_3800 SM00342 helix_turn_helix, arabinose operon control protein AS54_3802 SM00478 endonuclease III AS54_3809 SM00052 Putative diguanylate phosphodiesterase AS54_3809 SM00091 PAS domain AS54_3809 SM00267 diguanylate cyclase AS54_3819 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_3821 SM00148 Phospholipase C, catalytic domain (part); domain X AS54_3823 SM00257 Lysin motif AS54_3829 SM00853 MutL C terminal dimerisation domain AS54_3829 SM01340 AS54_3829 AS54_383 SM00860 SMI1 / KNR4 family AS54_3830 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AS54_3830 SM00534 ATPase domain of DNA mismatch repair MUTS family AS54_3833 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_3839 SM00322 K homology RNA-binding domain AS54_3839 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_3840 SM00382 ATPases associated with a variety of cellular activities AS54_3841 SM00852 Probable molybdopterin binding domain AS54_3851 SM00382 ATPases associated with a variety of cellular activities AS54_3853 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_3853 SM00866 AS54_3853 AS54_3854 SM00382 ATPases associated with a variety of cellular activities AS54_3854 SM00843 AS54_3854 AS54_3857 SM00849 Metallo-beta-lactamase superfamily AS54_3858 SM01130 AS54_3858 AS54_386 SM00448 cheY-homologous receiver domain AS54_386 SM00862 Transcriptional regulatory protein, C terminal AS54_3860 SM00859 Semialdehyde dehydrogenase, NAD binding domain AS54_3866 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_3866 SM00322 K homology RNA-binding domain AS54_3867 SM01387 AS54_3867 AS54_3868 SM00904 Riboflavin kinase AS54_387 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_387 SM00387 Histidine kinase-like ATPases AS54_387 SM00388 His Kinase A (phosphoacceptor) domain AS54_3875 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_3875 SM00322 K homology RNA-binding domain AS54_3878 SM00507 HNH nucleases AS54_3880 SM00479 AS54_3880 AS54_3880 SM00481 DNA polymerase alpha chain like domain AS54_3882 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AS54_3891 SM00382 ATPases associated with a variety of cellular activities AS54_3891 SM01086 C-terminal, D2-small domain, of ClpB protein AS54_3895 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AS54_3895 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AS54_3895 SM00493 AS54_3895 AS54_3897 SM00881 CoA binding domain AS54_3907 SM00382 ATPases associated with a variety of cellular activities AS54_3907 SM00962 SRP54-type protein, GTPase domain AS54_3907 SM00963 SRP54-type protein, helical bundle domain AS54_3909 SM00382 ATPases associated with a variety of cellular activities AS54_3909 SM00962 SRP54-type protein, GTPase domain AS54_3909 SM00963 SRP54-type protein, helical bundle domain AS54_3910 SM00968 SMC proteins Flexible Hinge Domain AS54_3911 SM00358 Double-stranded RNA binding motif AS54_3911 SM00535 Ribonuclease III family AS54_3913 SM00822 AS54_3913 AS54_3914 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AS54_3917 SM00487 DEAD-like helicases superfamily AS54_3917 SM00490 helicase superfamily c-terminal domain AS54_3918 SM01120 AS54_3918 AS54_3918 SM01121 AS54_3918 AS54_3921 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AS54_3924 SM00220 Serine/Threonine protein kinases, catalytic domain AS54_3924 SM00740 AS54_3924 AS54_3925 SM00331 Sigma factor PP2C-like phosphatases AS54_3925 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AS54_3930 SM00487 DEAD-like helicases superfamily AS54_3930 SM00490 helicase superfamily c-terminal domain AS54_3932 SM01409 AS54_3932 AS54_3933 SM00072 Guanylate kinase homologues. AS54_3936 SM00831 Cation transporter/ATPase, N-terminus AS54_3946 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AS54_3949 SM00851 MGS-like domain AS54_3949 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AS54_3949 SM01209 AS54_3949 AS54_3950 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AS54_3955 SM00363 S4 RNA-binding domain AS54_3960 SM00363 S4 RNA-binding domain AS54_3969 SM00864 Tubulin/FtsZ family, GTPase domain AS54_3969 SM00865 Tubulin/FtsZ family, C-terminal domain AS54_3970 SM00842 Cell division protein FtsA AS54_3978 SM00740 AS54_3978 AS54_3979 SM00740 AS54_3979 AS54_3985 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains AS54_3989 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AS54_3997 SM00855 Phosphoglycerate mutase family AS54_4010 SM00878 Biotin carboxylase C-terminal domain AS54_4014 SM00670 Large family of predicted nucleotide-binding domains AS54_4019 SM00838 Elongation factor G C-terminus AS54_4035 SM00861 Transketolase, pyrimidine binding domain AS54_4041 SM00849 Metallo-beta-lactamase superfamily AS54_405 SM00382 ATPases associated with a variety of cellular activities AS54_4054 SM00052 Putative diguanylate phosphodiesterase AS54_406 SM00387 Histidine kinase-like ATPases AS54_406 SM00388 His Kinase A (phosphoacceptor) domain AS54_4062 SM00267 diguanylate cyclase AS54_407 SM00448 cheY-homologous receiver domain AS54_407 SM00862 Transcriptional regulatory protein, C terminal AS54_4071 SM00387 Histidine kinase-like ATPases AS54_4071 SM00388 His Kinase A (phosphoacceptor) domain AS54_4074 SM00354 helix_turn _helix lactose operon repressor AS54_4078 SM00642 Alpha-amylase domain AS54_4079 SM00642 Alpha-amylase domain AS54_4080 SM00382 ATPases associated with a variety of cellular activities AS54_4088 SM00382 ATPases associated with a variety of cellular activities AS54_41 SM00091 PAS domain AS54_41 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_41 SM00387 Histidine kinase-like ATPases AS54_41 SM00388 His Kinase A (phosphoacceptor) domain AS54_4104 SM01007 Class II Aldolase and Adducin N-terminal domain AS54_4109 SM00267 diguanylate cyclase AS54_4116 SM01061 CAT RNA binding domain AS54_4118 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_4118 SM00866 AS54_4118 AS54_4121 SM00849 Metallo-beta-lactamase superfamily AS54_4140 SM00387 Histidine kinase-like ATPases AS54_4142 SM00936 Penicillin-binding protein 5, C-terminal domain AS54_4143 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_4144 SM00382 ATPases associated with a variety of cellular activities AS54_4147 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_4151 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AS54_4170 SM00354 helix_turn _helix lactose operon repressor AS54_4174 SM00704 CDGSH-type zinc finger. Function unknown. AS54_418 SM01001 AIR carboxylase AS54_4180 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_4180 SM00876 Biotin and Thiamin Synthesis associated domain AS54_4190 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_4197 SM00859 Semialdehyde dehydrogenase, NAD binding domain AS54_42 SM00448 cheY-homologous receiver domain AS54_42 SM00862 Transcriptional regulatory protein, C terminal AS54_420 SM00998 Adenylosuccinate lyase C-terminus AS54_4200 SM00849 Metallo-beta-lactamase superfamily AS54_4204 SM00849 Metallo-beta-lactamase superfamily AS54_4212 SM00382 ATPases associated with a variety of cellular activities AS54_4214 SM00062 Bacterial periplasmic substrate-binding proteins AS54_4214 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AS54_4220 SM00861 Transketolase, pyrimidine binding domain AS54_4224 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS54_4226 SM00091 PAS domain AS54_4226 SM00382 ATPases associated with a variety of cellular activities AS54_423 SM01211 AS54_423 AS54_4231 SM00448 cheY-homologous receiver domain AS54_4232 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AS54_4235 SM00363 S4 RNA-binding domain AS54_4236 SM00861 Transketolase, pyrimidine binding domain AS54_4243 SM00878 Biotin carboxylase C-terminal domain AS54_4253 SM00382 ATPases associated with a variety of cellular activities AS54_4257 SM00841 Elongation factor P, C-terminal AS54_4257 SM01185 AS54_4257 AS54_4264 SM00529 Helix-turn-helix diphteria tox regulatory element AS54_4270 SM00450 Rhodanese Homology Domain AS54_4271 SM00354 helix_turn _helix lactose operon repressor AS54_428 SM00798 AICARFT/IMPCHase bienzyme AS54_428 SM00851 MGS-like domain AS54_4281 SM00382 ATPases associated with a variety of cellular activities AS54_4282 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_4288 SM00487 DEAD-like helicases superfamily AS54_4288 SM00490 helicase superfamily c-terminal domain AS54_429 SM01209 AS54_429 AS54_429 SM01210 AS54_429 AS54_4295 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AS54_4302 SM00382 ATPases associated with a variety of cellular activities AS54_431 SM00244 prohibitin homologues AS54_4312 SM01018 B12 binding domain AS54_4316 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_4318 SM00849 Metallo-beta-lactamase superfamily AS54_4326 SM00382 ATPases associated with a variety of cellular activities AS54_4339 SM00382 ATPases associated with a variety of cellular activities AS54_4342 SM00518 AP endonuclease family 2 AS54_4343 SM00487 DEAD-like helicases superfamily AS54_4343 SM00490 helicase superfamily c-terminal domain AS54_435 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AS54_435 SM00292 breast cancer carboxy-terminal domain AS54_435 SM00532 Ligase N family AS54_4350 SM00400 zinc finger AS54_4350 SM00493 AS54_4350 AS54_4350 SM00766 DNA primase DnaG DnaB-binding AS54_4352 SM00116 Domain in cystathionine beta-synthase and other proteins. AS54_4359 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_4365 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_4368 SM00271 DnaJ molecular chaperone homology domain AS54_4372 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_4374 SM00838 Elongation factor G C-terminus AS54_4380 SM00849 Metallo-beta-lactamase superfamily AS54_4382 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AS54_4386 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_4388 SM01103 AS54_4388 AS54_4399 SM00954 Region found in RelA / SpoT proteins AS54_4401 SM00098 Alkaline phosphatase homologues AS54_4406 SM00855 Phosphoglycerate mutase family AS54_441 SM00382 ATPases associated with a variety of cellular activities AS54_441 SM00930 AS54_441 AS54_4415 SM00530 Helix-turn-helix XRE-family like proteins AS54_4420 SM00382 ATPases associated with a variety of cellular activities AS54_4439 SM00732 Likely ribonuclease with RNase H fold. AS54_4441 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AS54_4448 SM00028 Tetratricopeptide repeats AS54_4452 SM00382 ATPases associated with a variety of cellular activities AS54_4459 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_4459 SM00954 Region found in RelA / SpoT proteins AS54_4468 SM01323 AS54_4468 AS54_447 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_4472 SM00382 ATPases associated with a variety of cellular activities AS54_4473 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AS54_4478 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_4481 SM00257 Lysin motif AS54_4490 SM00382 ATPases associated with a variety of cellular activities AS54_4491 SM00387 Histidine kinase-like ATPases AS54_4492 SM00448 cheY-homologous receiver domain AS54_4492 SM00862 Transcriptional regulatory protein, C terminal AS54_4494 SM01317 AS54_4494 AS54_451 SM00845 GatB domain AS54_4512 SM00257 Lysin motif AS54_4514 SM01004 Delta-aminolevulinic acid dehydratase AS54_4519 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_452 SM00046 Diacylglycerol kinase catalytic domain (presumed) AS54_4522 SM00382 ATPases associated with a variety of cellular activities AS54_4522 SM00464 Found in ATP-dependent protease La (LON) AS54_4523 SM00382 ATPases associated with a variety of cellular activities AS54_4524 SM00382 ATPases associated with a variety of cellular activities AS54_4524 SM00994 ClpX C4-type zinc finger AS54_4524 SM01086 C-terminal, D2-small domain, of ClpB protein AS54_4536 SM00909 Sporulation and spore germination AS54_4543 SM00421 helix_turn_helix, Lux Regulon AS54_4547 SM00530 Helix-turn-helix XRE-family like proteins AS54_455 SM00382 ATPases associated with a variety of cellular activities AS54_4553 SM00382 ATPases associated with a variety of cellular activities AS54_4563 SM00465 GIY-YIG type nucleases (URI domain) AS54_4565 SM00893 Electron transfer flavoprotein domain AS54_4566 SM00893 Electron transfer flavoprotein domain AS54_4578 SM00382 ATPases associated with a variety of cellular activities AS54_4579 SM00387 Histidine kinase-like ATPases AS54_4579 SM00388 His Kinase A (phosphoacceptor) domain AS54_4580 SM00448 cheY-homologous receiver domain AS54_4580 SM00862 Transcriptional regulatory protein, C terminal AS54_4583 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AS54_4587 SM00382 ATPases associated with a variety of cellular activities AS54_4590 SM00725 NEAr Transporter domain AS54_4591 SM00725 NEAr Transporter domain AS54_4593 SM00363 S4 RNA-binding domain AS54_4595 SM00463 Small MutS-related domain AS54_4595 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AS54_4595 SM00534 ATPase domain of DNA mismatch repair MUTS family AS54_4596 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AS54_4596 SM00481 DNA polymerase alpha chain like domain AS54_4596 SM00483 DNA polymerase X family AS54_4604 SM00873 B3/4 domain AS54_4604 SM00874 tRNA synthetase B5 domain AS54_4604 SM00896 Ferredoxin-fold anticodon binding domain AS54_4606 SM00967 RNA 2'-O ribose methyltransferase substrate binding AS54_4623 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AS54_4625 SM00382 ATPases associated with a variety of cellular activities AS54_4629 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS54_4632 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AS54_4632 SM01232 AS54_4632 AS54_4633 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AS54_4633 SM00474 3'-5' exonuclease AS54_4633 SM00475 5'-3' exonuclease AS54_4633 SM00482 DNA polymerase A domain AS54_4634 SM00091 PAS domain AS54_4634 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_4634 SM00387 Histidine kinase-like ATPases AS54_4634 SM00388 His Kinase A (phosphoacceptor) domain AS54_4635 SM00448 cheY-homologous receiver domain AS54_4635 SM00862 Transcriptional regulatory protein, C terminal AS54_464 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AS54_464 SM00387 Histidine kinase-like ATPases AS54_464 SM00388 His Kinase A (phosphoacceptor) domain AS54_4640 SM01329 AS54_4640 AS54_4649 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_4650 SM00919 Malic enzyme, NAD binding domain AS54_4650 SM01274 AS54_4650 AS54_4651 SM00481 DNA polymerase alpha chain like domain AS54_4658 SM00116 Domain in cystathionine beta-synthase and other proteins. AS54_4660 SM00849 Metallo-beta-lactamase superfamily AS54_4672 SM00530 Helix-turn-helix XRE-family like proteins AS54_4674 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AS54_4674 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AS54_468 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AS54_4698 SM00981 AS54_4698 AS54_47 SM00788 Adenylosuccinate synthetase AS54_4707 SM00363 S4 RNA-binding domain AS54_4707 SM01390 AS54_4707 AS54_4715 SM00363 S4 RNA-binding domain AS54_4719 SM00116 Domain in cystathionine beta-synthase and other proteins. AS54_4723 SM00448 cheY-homologous receiver domain AS54_4723 SM00862 Transcriptional regulatory protein, C terminal AS54_4724 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_4724 SM00387 Histidine kinase-like ATPases AS54_4724 SM00388 His Kinase A (phosphoacceptor) domain AS54_4725 SM00248 ankyrin repeats AS54_4732 SM00354 helix_turn _helix lactose operon repressor AS54_4741 SM00382 ATPases associated with a variety of cellular activities AS54_4749 SM00382 ATPases associated with a variety of cellular activities AS54_4749 SM00843 AS54_4749 AS54_4757 SM00849 Metallo-beta-lactamase superfamily AS54_4761 SM00642 Alpha-amylase domain AS54_4764 SM00420 helix_turn_helix, Deoxyribose operon repressor AS54_4765 SM00363 S4 RNA-binding domain AS54_4769 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_477 SM01007 Class II Aldolase and Adducin N-terminal domain AS54_4774 SM01058 CarD-like/TRCF domain AS54_4781 SM00852 Probable molybdopterin binding domain AS54_4784 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_4788 SM00450 Rhodanese Homology Domain AS54_4804 SM00382 ATPases associated with a variety of cellular activities AS54_4808 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_4810 SM00382 ATPases associated with a variety of cellular activities AS54_4818 SM00014 Acid phosphatase homologues AS54_4821 SM00852 Probable molybdopterin binding domain AS54_4834 SM00420 helix_turn_helix, Deoxyribose operon repressor AS54_4834 SM01134 AS54_4834 AS54_4836 SM00387 Histidine kinase-like ATPases AS54_4837 SM00387 Histidine kinase-like ATPases AS54_4837 SM00388 His Kinase A (phosphoacceptor) domain AS54_4843 SM00382 ATPases associated with a variety of cellular activities AS54_4854 SM00947 Carbonic anhydrase AS54_4855 SM01234 AS54_4855 AS54_4859 SM00894 Excalibur calcium-binding domain AS54_4879 SM00899 AS54_4879 AS54_4881 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_4881 SM00387 Histidine kinase-like ATPases AS54_4881 SM00388 His Kinase A (phosphoacceptor) domain AS54_4882 SM00448 cheY-homologous receiver domain AS54_4882 SM00862 Transcriptional regulatory protein, C terminal AS54_4888 SM00046 Diacylglycerol kinase catalytic domain (presumed) AS54_4895 SM00342 helix_turn_helix, arabinose operon control protein AS54_4898 SM00382 ATPases associated with a variety of cellular activities AS54_4899 SM00342 helix_turn_helix, arabinose operon control protein AS54_4899 SM00871 Bacterial transcription activator, effector binding domain AS54_4900 SM00448 cheY-homologous receiver domain AS54_4900 SM00862 Transcriptional regulatory protein, C terminal AS54_4901 SM00387 Histidine kinase-like ATPases AS54_4904 SM00382 ATPases associated with a variety of cellular activities AS54_4908 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_4908 SM00866 AS54_4908 AS54_4914 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_4914 SM00387 Histidine kinase-like ATPases AS54_4914 SM00388 His Kinase A (phosphoacceptor) domain AS54_4915 SM00448 cheY-homologous receiver domain AS54_4915 SM00862 Transcriptional regulatory protein, C terminal AS54_4916 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AS54_4924 SM00357 Cold shock protein domain AS54_4932 SM00642 Alpha-amylase domain AS54_4967 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_4969 SM00344 helix_turn_helix ASNC type AS54_497 SM00062 Bacterial periplasmic substrate-binding proteins AS54_497 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AS54_4977 SM01298 AS54_4977 AS54_4978 SM00479 AS54_4978 AS54_498 SM00382 ATPases associated with a variety of cellular activities AS54_499 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_499 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_4996 SM00871 Bacterial transcription activator, effector binding domain AS54_50 SM00267 diguanylate cyclase AS54_500 SM00642 Alpha-amylase domain AS54_5005 SM00382 ATPases associated with a variety of cellular activities AS54_5018 SM00382 ATPases associated with a variety of cellular activities AS54_5028 SM00422 helix_turn_helix, mercury resistance AS54_5031 SM00855 Phosphoglycerate mutase family AS54_5033 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_504 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AS54_504 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AS54_504 SM00493 AS54_504 AS54_5044 SM00382 ATPases associated with a variety of cellular activities AS54_5048 SM00382 ATPases associated with a variety of cellular activities AS54_5048 SM00930 AS54_5048 AS54_5051 SM00493 AS54_5051 AS54_5068 SM00530 Helix-turn-helix XRE-family like proteins AS54_5070 SM00849 Metallo-beta-lactamase superfamily AS54_5073 SM00382 ATPases associated with a variety of cellular activities AS54_508 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_508 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_5086 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_5086 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_5102 SM00530 Helix-turn-helix XRE-family like proteins AS54_5107 SM00448 cheY-homologous receiver domain AS54_5107 SM00862 Transcriptional regulatory protein, C terminal AS54_5108 SM00387 Histidine kinase-like ATPases AS54_5108 SM00388 His Kinase A (phosphoacceptor) domain AS54_5112 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_5112 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_5113 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_5113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_5117 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_512 SM00382 ATPases associated with a variety of cellular activities AS54_514 SM00382 ATPases associated with a variety of cellular activities AS54_5143 SM00363 S4 RNA-binding domain AS54_5145 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AS54_5146 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_515 SM00060 Fibronectin type 3 domain AS54_515 SM00636 AS54_515 AS54_515 SM00637 AS54_515 AS54_5153 SM00382 ATPases associated with a variety of cellular activities AS54_5157 SM00382 ATPases associated with a variety of cellular activities AS54_5161 SM00448 cheY-homologous receiver domain AS54_5161 SM00862 Transcriptional regulatory protein, C terminal AS54_5163 SM00316 Ribosomal protein S1-like RNA-binding domain AS54_5163 SM00357 Cold shock protein domain AS54_5163 SM00955 AS54_5163 AS54_5170 SM01192 AS54_5170 AS54_5170 SM01193 AS54_5170 AS54_5174 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS54_5184 SM00530 Helix-turn-helix XRE-family like proteins AS54_5188 SM00857 Resolvase, N terminal domain AS54_5211 SM00028 Tetratricopeptide repeats AS54_5219 SM00487 DEAD-like helicases superfamily AS54_5219 SM00490 helicase superfamily c-terminal domain AS54_522 SM00530 Helix-turn-helix XRE-family like proteins AS54_5222 SM00422 helix_turn_helix, mercury resistance AS54_5226 SM00530 Helix-turn-helix XRE-family like proteins AS54_5229 SM00422 helix_turn_helix, mercury resistance AS54_5233 SM00382 ATPases associated with a variety of cellular activities AS54_5235 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AS54_5235 SM00245 tail specific protease AS54_5237 SM00382 ATPases associated with a variety of cellular activities AS54_5239 SM00937 AS54_5239 AS54_5240 SM00957 SecA DEAD-like domain AS54_5240 SM00958 SecA preprotein cross-linking domain AS54_5242 SM00357 Cold shock protein domain AS54_5244 SM00487 DEAD-like helicases superfamily AS54_5244 SM00490 helicase superfamily c-terminal domain AS54_5251 SM00984 UDP binding domain AS54_5254 SM00382 ATPases associated with a variety of cellular activities AS54_5255 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AS54_5265 SM00850 LytTr DNA-binding domain AS54_527 SM00946 Prolyl-tRNA synthetase, C-terminal AS54_5290 SM00287 Bacterial SH3 domain homologues AS54_5296 SM00287 Bacterial SH3 domain homologues AS54_5302 SM00487 DEAD-like helicases superfamily AS54_5302 SM00490 helicase superfamily c-terminal domain AS54_5312 SM00382 ATPases associated with a variety of cellular activities AS54_5314 SM00530 Helix-turn-helix XRE-family like proteins AS54_5319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_5319 SM00387 Histidine kinase-like ATPases AS54_5319 SM00388 His Kinase A (phosphoacceptor) domain AS54_5320 SM00448 cheY-homologous receiver domain AS54_5320 SM00862 Transcriptional regulatory protein, C terminal AS54_5331 SM00984 UDP binding domain AS54_5346 SM00382 ATPases associated with a variety of cellular activities AS54_5347 SM00850 LytTr DNA-binding domain AS54_536 SM00831 Cation transporter/ATPase, N-terminus AS54_5363 SM00052 Putative diguanylate phosphodiesterase AS54_5363 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AS54_5363 SM00091 PAS domain AS54_5363 SM00267 diguanylate cyclase AS54_5367 SM00382 ATPases associated with a variety of cellular activities AS54_538 SM00226 Low molecular weight phosphatase family AS54_5382 SM00226 Low molecular weight phosphatase family AS54_5385 SM00903 Flavin reductase like domain AS54_5394 SM00937 AS54_5394 AS54_5397 SM00357 Cold shock protein domain AS54_5397 SM00382 ATPases associated with a variety of cellular activities AS54_5397 SM00959 Rho termination factor, N-terminal domain AS54_5401 SM00448 cheY-homologous receiver domain AS54_5411 SM00155 Phospholipase D. Active site motifs. AS54_5413 SM00052 Putative diguanylate phosphodiesterase AS54_5413 SM00267 diguanylate cyclase AS54_5415 SM00530 Helix-turn-helix XRE-family like proteins AS54_5417 SM00421 helix_turn_helix, Lux Regulon AS54_5417 SM00448 cheY-homologous receiver domain AS54_5420 SM00382 ATPases associated with a variety of cellular activities AS54_5428 SM00836 DALR anticodon binding domain AS54_5428 SM01016 Arginyl tRNA synthetase N terminal dom AS54_5436 SM00422 helix_turn_helix, mercury resistance AS54_5442 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AS54_5444 SM00382 ATPases associated with a variety of cellular activities AS54_5453 SM00936 Penicillin-binding protein 5, C-terminal domain AS54_5462 SM00986 Uracil DNA glycosylase superfamily AS54_5462 SM00987 UreE urease accessory protein, C-terminal domain AS54_5464 SM00382 ATPases associated with a variety of cellular activities AS54_5466 SM00354 helix_turn _helix lactose operon repressor AS54_5472 SM00100 Cyclic nucleotide-monophosphate binding domain AS54_5474 SM00421 helix_turn_helix, Lux Regulon AS54_5474 SM00448 cheY-homologous receiver domain AS54_5475 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AS54_5477 SM00267 diguanylate cyclase AS54_5480 SM00448 cheY-homologous receiver domain AS54_5480 SM00850 LytTr DNA-binding domain AS54_5486 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_5487 SM00758 AS54_5487 AS54_5510 SM00984 UDP binding domain AS54_5514 SM00014 Acid phosphatase homologues AS54_5518 SM00725 NEAr Transporter domain AS54_5526 SM00854 Bacterial capsule synthesis protein PGA_cap AS54_557 SM00478 endonuclease III AS54_5570 SM00864 Tubulin/FtsZ family, GTPase domain AS54_5573 SM00843 AS54_5573 AS54_5574 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_5586 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AS54_5607 SM00487 DEAD-like helicases superfamily AS54_561 SM00382 ATPases associated with a variety of cellular activities AS54_5622 SM00318 Staphylococcal nuclease homologues AS54_5626 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_5646 SM00860 SMI1 / KNR4 family AS54_565 SM00530 Helix-turn-helix XRE-family like proteins AS54_5666 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_5667 SM00758 AS54_5667 AS54_575 SM00984 UDP binding domain AS54_59 SM00470 ParB-like nuclease domain AS54_591 SM00478 endonuclease III AS54_591 SM00525 AS54_591 AS54_597 SM00382 ATPases associated with a variety of cellular activities AS54_601 SM00382 ATPases associated with a variety of cellular activities AS54_61 SM00470 ParB-like nuclease domain AS54_63 SM01228 AS54_63 AS54_633 SM00567 E-Z type HEAT repeats AS54_636 SM00052 Putative diguanylate phosphodiesterase AS54_636 SM00091 PAS domain AS54_636 SM00267 diguanylate cyclase AS54_638 SM00763 PrkA AAA domain AS54_640 SM00365 Leucine-rich repeat, SDS22-like subfamily AS54_640 SM00369 Leucine-rich repeats, typical (most populated) subfamily AS54_640 SM00725 NEAr Transporter domain AS54_642 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AS54_644 SM00244 prohibitin homologues AS54_645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_646 SM00387 Histidine kinase-like ATPases AS54_647 SM00448 cheY-homologous receiver domain AS54_65 SM00393 Putative single-stranded nucleic acids-binding domain AS54_65 SM01245 AS54_65 AS54_651 SM00248 ankyrin repeats AS54_653 SM00448 cheY-homologous receiver domain AS54_653 SM00862 Transcriptional regulatory protein, C terminal AS54_654 SM00387 Histidine kinase-like ATPases AS54_654 SM00388 His Kinase A (phosphoacceptor) domain AS54_657 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_657 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_658 SM00387 Histidine kinase-like ATPases AS54_659 SM00448 cheY-homologous receiver domain AS54_661 SM00919 Malic enzyme, NAD binding domain AS54_661 SM01274 AS54_661 AS54_664 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_666 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_666 SM00387 Histidine kinase-like ATPases AS54_666 SM00388 His Kinase A (phosphoacceptor) domain AS54_667 SM00448 cheY-homologous receiver domain AS54_667 SM00862 Transcriptional regulatory protein, C terminal AS54_671 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AS54_671 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS54_674 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AS54_674 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AS54_676 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_679 SM00028 Tetratricopeptide repeats AS54_679 SM00530 Helix-turn-helix XRE-family like proteins AS54_689 SM01091 Transporter associated domain AS54_69 SM00382 ATPases associated with a variety of cellular activities AS54_69 SM00760 Bacterial dnaA protein helix-turn-helix domain AS54_692 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AS54_7 SM00382 ATPases associated with a variety of cellular activities AS54_70 SM00480 DNA polymerase III beta subunit AS54_700 SM00382 ATPases associated with a variety of cellular activities AS54_706 SM00327 von Willebrand factor (vWF) type A domain AS54_707 SM00382 ATPases associated with a variety of cellular activities AS54_708 SM00155 Phospholipase D. Active site motifs. AS54_713 SM00345 helix_turn_helix gluconate operon transcriptional repressor AS54_713 SM00866 AS54_713 AS54_715 SM00642 Alpha-amylase domain AS54_719 SM00387 Histidine kinase-like ATPases AS54_720 SM00421 helix_turn_helix, Lux Regulon AS54_720 SM00448 cheY-homologous receiver domain AS54_726 SM00382 ATPases associated with a variety of cellular activities AS54_727 SM00062 Bacterial periplasmic substrate-binding proteins AS54_727 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AS54_73 SM00387 Histidine kinase-like ATPases AS54_73 SM00433 TopoisomeraseII AS54_737 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AS54_737 SM00387 Histidine kinase-like ATPases AS54_737 SM00388 His Kinase A (phosphoacceptor) domain AS54_738 SM00448 cheY-homologous receiver domain AS54_738 SM00862 Transcriptional regulatory protein, C terminal AS54_74 SM00434 DNA Topoisomerase IV AS54_746 SM00382 ATPases associated with a variety of cellular activities AS54_747 SM00382 ATPases associated with a variety of cellular activities AS54_749 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_751 SM00354 helix_turn _helix lactose operon repressor AS54_754 SM00382 ATPases associated with a variety of cellular activities AS54_760 SM00829 Enoylreductase AS54_762 SM00770 Zinc dependent phospholipase C (alpha toxin) AS54_769 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AS54_771 SM00530 Helix-turn-helix XRE-family like proteins AS54_781 SM00530 Helix-turn-helix XRE-family like proteins AS54_799 SM00899 AS54_799 AS54_82 SM00116 Domain in cystathionine beta-synthase and other proteins. AS54_82 SM01240 AS54_82 AS54_829 SM00116 Domain in cystathionine beta-synthase and other proteins. AS54_83 SM00936 Penicillin-binding protein 5, C-terminal domain AS54_832 SM00287 Bacterial SH3 domain homologues AS54_834 SM00382 ATPases associated with a variety of cellular activities AS54_851 SM00347 helix_turn_helix multiple antibiotic resistance protein AS54_856 SM00382 ATPases associated with a variety of cellular activities AS54_863 SM00640 Glycosyl hydrolases family 32 AS54_865 SM00354 helix_turn _helix lactose operon repressor AS54_878 SM00450 Rhodanese Homology Domain AS54_880 SM00450 Rhodanese Homology Domain AS54_881 SM00450 Rhodanese Homology Domain AS54_881 SM00849 Metallo-beta-lactamase superfamily AS54_883 SM00450 Rhodanese Homology Domain AS54_884 SM00450 Rhodanese Homology Domain AS54_889 SM00829 Enoylreductase AS54_899 SM00287 Bacterial SH3 domain homologues AS54_901 SM00382 ATPases associated with a variety of cellular activities AS54_913 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AS54_93 SM00382 ATPases associated with a variety of cellular activities AS54_934 SM00344 helix_turn_helix ASNC type AS54_944 SM01060 AS54_944 AS54_95 SM00493 AS54_95 AS54_950 SM00382 ATPases associated with a variety of cellular activities AS54_951 SM00382 ATPases associated with a variety of cellular activities AS54_952 SM00062 Bacterial periplasmic substrate-binding proteins AS54_952 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AS54_954 SM00382 ATPases associated with a variety of cellular activities AS54_967 SM00644 AS54_967 AS54_968 SM00729 Elongator protein 3, MiaB family, Radical SAM AS54_976 SM00957 SecA DEAD-like domain AS54_976 SM00958 SecA preprotein cross-linking domain AS54_989 SM00646 AS54_989 AS54_998 SM00382 ATPases associated with a variety of cellular activities AS54_999 SM00382 ATPases associated with a variety of cellular activities