locus-tag class description AK40_1 PF02386 Cation transport protein AK40_10 PF00455 DeoR C terminal sensor domain AK40_10 PF08220 DeoR-like helix-turn-helix domain AK40_100 PF00884 Sulfatase AK40_1001 PF13649 Methyltransferase domain AK40_1010 PF00753 Metallo-beta-lactamase superfamily AK40_1010 PF16123 Hydroxyacylglutathione hydrolase C-terminus AK40_1012 PF03176 MMPL family AK40_1014 PF00302 Chloramphenicol acetyltransferase AK40_1017 PF00583 Acetyltransferase (GNAT) family AK40_102 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AK40_102 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AK40_1025 PF08241 Methyltransferase domain AK40_1026 PF13302 Acetyltransferase (GNAT) domain AK40_1028 PF00313 'Cold-shock' DNA-binding domain AK40_1033 PF03466 LysR substrate binding domain AK40_1033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_1034 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK40_1034 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK40_1037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_1037 PF03466 LysR substrate binding domain AK40_1038 PF03473 MOSC domain AK40_1038 PF03475 3-alpha domain AK40_104 PF01507 Phosphoadenosine phosphosulfate reductase family AK40_1041 PF00005 ABC transporter AK40_1041 PF00664 ABC transporter transmembrane region AK40_1042 PF00005 ABC transporter AK40_1042 PF00664 ABC transporter transmembrane region AK40_1045 PF01810 LysE type translocator AK40_1046 PF07883 Cupin domain AK40_1046 PF01381 Helix-turn-helix AK40_105 PF01747 ATP-sulfurylase AK40_105 PF14306 PUA-like domain AK40_1053 PF02824 TGS domain AK40_1053 PF13291 ACT domain AK40_1053 PF04607 Region found in RelA / SpoT proteins AK40_1055 PF00890 FAD binding domain AK40_1056 PF12680 SnoaL-like domain AK40_1056 PF08281 Sigma-70, region 4 AK40_1056 PF04542 Sigma-70 region 2 AK40_1061 PF02638 Glycosyl hydrolase-like 10 AK40_1063 PF02378 Phosphotransferase system, EIIC AK40_1065 PF03702 Anhydro-N-acetylmuramic acid kinase AK40_1066 PF01869 BadF/BadG/BcrA/BcrD ATPase family AK40_1067 PF02660 Glycerol-3-phosphate acyltransferase AK40_1068 PF00266 Aminotransferase class-V AK40_1069 PF00291 Pyridoxal-phosphate dependent enzyme AK40_107 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AK40_107 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AK40_1073 PF16123 Hydroxyacylglutathione hydrolase C-terminus AK40_1073 PF00753 Metallo-beta-lactamase superfamily AK40_1076 PF00270 DEAD/DEAH box helicase AK40_1076 PF00271 Helicase conserved C-terminal domain AK40_1078 PF00440 Bacterial regulatory proteins, tetR family AK40_1078 PF17932 Tetracyclin repressor-like, C-terminal domain AK40_1082 PF12704 MacB-like periplasmic core domain AK40_1082 PF02687 FtsX-like permease family AK40_1082 PF00005 ABC transporter AK40_1083 PF03848 Tellurite resistance protein TehB AK40_1083 PF09313 Domain of unknown function (DUF1971) AK40_1085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_1085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_1085 PF00205 Thiamine pyrophosphate enzyme, central domain AK40_1086 PF14659 Phage integrase, N-terminal SAM-like domain AK40_1086 PF00589 Phage integrase family AK40_109 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK40_110 PF01903 CbiX AK40_1100 PF00205 Thiamine pyrophosphate enzyme, central domain AK40_1100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_1100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_1101 PF00205 Thiamine pyrophosphate enzyme, central domain AK40_1101 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_1101 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_1102 PF12802 MarR family AK40_1103 PF00300 Histidine phosphatase superfamily (branch 1) AK40_1104 PF14171 Toxin SpoIISA, type II toxin-antitoxin system AK40_1109 PF07687 Peptidase dimerisation domain AK40_1109 PF01546 Peptidase family M20/M25/M40 AK40_1112 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_1113 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_1113 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_1115 PF03717 Penicillin-binding Protein dimerisation domain AK40_1115 PF00905 Penicillin binding protein transpeptidase domain AK40_1115 PF05223 NTF2-like N-terminal transpeptidase domain AK40_1116 PF08281 Sigma-70, region 4 AK40_1116 PF04542 Sigma-70 region 2 AK40_1118 PF00905 Penicillin binding protein transpeptidase domain AK40_1118 PF03717 Penicillin-binding Protein dimerisation domain AK40_112 PF00209 Sodium:neurotransmitter symporter family AK40_1122 PF00356 Bacterial regulatory proteins, lacI family AK40_1123 PF07690 Major Facilitator Superfamily AK40_1124 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK40_1124 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK40_1125 PF00294 pfkB family carbohydrate kinase AK40_1126 PF00171 Aldehyde dehydrogenase family AK40_1127 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_1127 PF00205 Thiamine pyrophosphate enzyme, central domain AK40_1127 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_1128 PF01261 Xylose isomerase-like TIM barrel AK40_1129 PF01116 Fructose-bisphosphate aldolase class-II AK40_1130 PF04962 KduI/IolB family AK40_1135 PF02872 5'-nucleotidase, C-terminal domain AK40_1135 PF00149 Calcineurin-like phosphoesterase AK40_1137 PF18801 response regulator aspartate phosphatase H, N terminal AK40_1138 PF01381 Helix-turn-helix AK40_114 PF00375 Sodium:dicarboxylate symporter family AK40_1141 PF02557 D-alanyl-D-alanine carboxypeptidase AK40_1143 PF01520 N-acetylmuramoyl-L-alanine amidase AK40_1143 PF00395 S-layer homology domain AK40_1144 PF07968 Leukocidin/Hemolysin toxin family AK40_1145 PF00440 Bacterial regulatory proteins, tetR family AK40_1147 PF00990 Diguanylate cyclase, GGDEF domain AK40_1147 PF00563 EAL domain AK40_1147 PF03707 Bacterial signalling protein N terminal repeat AK40_1148 PF13302 Acetyltransferase (GNAT) domain AK40_1149 PF02743 Cache domain AK40_1149 PF00672 HAMP domain AK40_1149 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_1150 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_1151 PF00581 Rhodanese-like domain AK40_1155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK40_1155 PF02770 Acyl-CoA dehydrogenase, middle domain AK40_1155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK40_1156 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK40_1156 PF00289 Biotin carboxylase, N-terminal domain AK40_1156 PF02785 Biotin carboxylase C-terminal domain AK40_1157 PF00364 Biotin-requiring enzyme AK40_1158 PF00682 HMGL-like AK40_1159 PF00378 Enoyl-CoA hydratase/isomerase AK40_116 PF03553 Na+/H+ antiporter family AK40_1160 PF01039 Carboxyl transferase domain AK40_1161 PF13193 AMP-binding enzyme C-terminal domain AK40_1161 PF00501 AMP-binding enzyme AK40_1161 PF16177 Acetyl-coenzyme A synthetase N-terminus AK40_1164 PF00485 Phosphoribulokinase / Uridine kinase family AK40_1167 PF05163 DinB family AK40_1168 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_1168 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_1169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1169 PF00512 His Kinase A (phospho-acceptor) domain AK40_1170 PF00486 Transcriptional regulatory protein, C terminal AK40_1170 PF00072 Response regulator receiver domain AK40_1171 PF01966 HD domain AK40_1172 PF01048 Phosphorylase superfamily AK40_1176 PF01447 Thermolysin metallopeptidase, catalytic domain AK40_1176 PF03413 Peptidase propeptide and YPEB domain AK40_1176 PF07504 Fungalysin/Thermolysin Propeptide Motif AK40_1176 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK40_1180 PF17760 UvrA interaction domain AK40_1180 PF17755 UvrA DNA-binding domain AK40_1180 PF17760 UvrA interaction domain AK40_1180 PF17755 UvrA DNA-binding domain AK40_1184 PF09278 MerR, DNA binding AK40_1184 PF00376 MerR family regulatory protein AK40_1185 PF07690 Major Facilitator Superfamily AK40_1187 PF13847 Methyltransferase domain AK40_119 PF09922 Cell wall-active antibiotics response 4TMS YvqF AK40_1190 PF01636 Phosphotransferase enzyme family AK40_1191 PF12833 Helix-turn-helix domain AK40_1194 PF00392 Bacterial regulatory proteins, gntR family AK40_1194 PF00155 Aminotransferase class I and II AK40_12 PF01520 N-acetylmuramoyl-L-alanine amidase AK40_12 PF00395 S-layer homology domain AK40_120 PF07730 Histidine kinase AK40_120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_120 PF00672 HAMP domain AK40_1203 PF08450 SMP-30/Gluconolactonase/LRE-like region AK40_1205 PF01921 tRNA synthetases class I (K) AK40_1206 PF07486 Cell Wall Hydrolase AK40_1208 PF00072 Response regulator receiver domain AK40_1208 PF00486 Transcriptional regulatory protein, C terminal AK40_1209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_121 PF00072 Response regulator receiver domain AK40_121 PF00196 Bacterial regulatory proteins, luxR family AK40_1214 PF00005 ABC transporter AK40_1215 PF02687 FtsX-like permease family AK40_1219 PF00742 Homoserine dehydrogenase AK40_1219 PF03447 Homoserine dehydrogenase, NAD binding domain AK40_1219 PF01842 ACT domain AK40_1220 PF00155 Aminotransferase class I and II AK40_1220 PF00392 Bacterial regulatory proteins, gntR family AK40_1221 PF01820 D-ala D-ala ligase N-terminus AK40_1221 PF07478 D-ala D-ala ligase C-terminus AK40_1222 PF03070 TENA/THI-4/PQQC family AK40_123 PF05525 Branched-chain amino acid transport protein AK40_1239 PF00067 Cytochrome P450 AK40_1241 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_1242 PF07561 Domain of Unknown Function (DUF1540) AK40_1244 PF00067 Cytochrome P450 AK40_1247 PF13426 PAS domain AK40_1247 PF13188 PAS domain AK40_1247 PF00989 PAS fold AK40_1247 PF00512 His Kinase A (phospho-acceptor) domain AK40_1247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1249 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AK40_125 PF08241 Methyltransferase domain AK40_1250 PF01177 Asp/Glu/Hydantoin racemase AK40_1251 PF07155 ECF-type riboflavin transporter, S component AK40_1252 PF12558 ATP-binding cassette cobalt transporter AK40_1252 PF00005 ABC transporter AK40_1255 PF00512 His Kinase A (phospho-acceptor) domain AK40_1255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1257 PF04229 GrpB protein AK40_1258 PF00107 Zinc-binding dehydrogenase AK40_1258 PF08240 Alcohol dehydrogenase GroES-like domain AK40_1259 PF01569 PAP2 superfamily AK40_1261 PF08361 MAATS-type transcriptional repressor, C-terminal region AK40_1261 PF00440 Bacterial regulatory proteins, tetR family AK40_1264 PF00144 Beta-lactamase AK40_1264 PF11954 Domain of unknown function (DUF3471) AK40_1269 PF02796 Helix-turn-helix domain of resolvase AK40_1269 PF00239 Resolvase, N terminal domain AK40_1271 PF01965 DJ-1/PfpI family AK40_1272 PF00583 Acetyltransferase (GNAT) family AK40_1276 PF07690 Major Facilitator Superfamily AK40_1280 PF03009 Glycerophosphoryl diester phosphodiesterase family AK40_1284 PF00155 Aminotransferase class I and II AK40_1284 PF00392 Bacterial regulatory proteins, gntR family AK40_1285 PF00892 EamA-like transporter family AK40_1288 PF00293 NUDIX domain AK40_1292 PF07690 Major Facilitator Superfamily AK40_1293 PF09297 NADH pyrophosphatase zinc ribbon domain AK40_1293 PF00293 NUDIX domain AK40_1294 PF02768 DNA polymerase III beta subunit, C-terminal domain AK40_1294 PF00712 DNA polymerase III beta subunit, N-terminal domain AK40_1294 PF02767 DNA polymerase III beta subunit, central domain AK40_1295 PF00293 NUDIX domain AK40_1297 PF12706 Beta-lactamase superfamily domain AK40_13 PF00596 Class II Aldolase and Adducin N-terminal domain AK40_130 PF00175 Oxidoreductase NAD-binding domain AK40_130 PF00042 Globin AK40_130 PF00970 Oxidoreductase FAD-binding domain AK40_1300 PF00300 Histidine phosphatase superfamily (branch 1) AK40_1301 PF09234 Domain of unknown function (DUF1963) AK40_1306 PF01734 Patatin-like phospholipase AK40_1307 PF08000 Bacterial PH domain AK40_1309 PF12867 DinB superfamily AK40_1312 PF02673 Bacitracin resistance protein BacA AK40_1314 PF01541 GIY-YIG catalytic domain AK40_1321 PF01266 FAD dependent oxidoreductase AK40_1326 PF13419 Haloacid dehalogenase-like hydrolase AK40_1329 PF01569 PAP2 superfamily AK40_133 PF01925 Sulfite exporter TauE/SafE AK40_1330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AK40_1330 PF00128 Alpha amylase, catalytic domain AK40_1330 PF03714 Bacterial pullanase-associated domain AK40_1331 PF07504 Fungalysin/Thermolysin Propeptide Motif AK40_1331 PF01447 Thermolysin metallopeptidase, catalytic domain AK40_1331 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK40_1331 PF03413 Peptidase propeptide and YPEB domain AK40_1336 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_1337 PF00344 SecY translocase AK40_1338 PF08299 Bacterial dnaA protein helix-turn-helix AK40_1338 PF11638 DnaA N-terminal domain AK40_1338 PF00308 Bacterial dnaA protein AK40_1339 PF00892 EamA-like transporter family AK40_134 PF01384 Phosphate transporter family AK40_1340 PF00392 Bacterial regulatory proteins, gntR family AK40_1340 PF00155 Aminotransferase class I and II AK40_1341 PF00561 alpha/beta hydrolase fold AK40_1346 PF06081 Aromatic acid exporter family member 1 AK40_1349 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AK40_135 PF01865 Protein of unknown function DUF47 AK40_1350 PF03413 Peptidase propeptide and YPEB domain AK40_1350 PF14620 YpeB sporulation AK40_1351 PF01471 Putative peptidoglycan binding domain AK40_1351 PF07486 Cell Wall Hydrolase AK40_1354 PF03301 Tryptophan 2,3-dioxygenase AK40_1355 PF04199 Putative cyclase AK40_1356 PF00266 Aminotransferase class-V AK40_1357 PF00440 Bacterial regulatory proteins, tetR family AK40_1357 PF08359 YsiA-like protein, C-terminal region AK40_1358 PF00293 NUDIX domain AK40_1358 PF13344 Haloacid dehalogenase-like hydrolase AK40_136 PF00912 Transglycosylase AK40_136 PF00905 Penicillin binding protein transpeptidase domain AK40_1362 PF02954 Bacterial regulatory protein, Fis family AK40_1362 PF00158 Sigma-54 interaction domain AK40_1362 PF01590 GAF domain AK40_1365 PF13302 Acetyltransferase (GNAT) domain AK40_1366 PF00455 DeoR C terminal sensor domain AK40_1366 PF08220 DeoR-like helix-turn-helix domain AK40_1369 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK40_1369 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_1369 PF00403 Heavy-metal-associated domain AK40_1370 PF02082 Transcriptional regulator AK40_1373 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_1373 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK40_1374 PF02817 e3 binding domain AK40_1374 PF00364 Biotin-requiring enzyme AK40_1374 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK40_1375 PF02779 Transketolase, pyrimidine binding domain AK40_1375 PF02780 Transketolase, C-terminal domain AK40_1376 PF00676 Dehydrogenase E1 component AK40_1378 PF00106 short chain dehydrogenase AK40_1379 PF04229 GrpB protein AK40_1379 PF13673 Acetyltransferase (GNAT) domain AK40_1380 PF00485 Phosphoribulokinase / Uridine kinase family AK40_1382 PF00293 NUDIX domain AK40_1387 PF00528 Binding-protein-dependent transport system inner membrane component AK40_1388 PF00571 CBS domain AK40_1388 PF00005 ABC transporter AK40_1389 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AK40_139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_139 PF00512 His Kinase A (phospho-acceptor) domain AK40_139 PF00989 PAS fold AK40_1390 PF00574 Clp protease AK40_1393 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AK40_1394 PF13673 Acetyltransferase (GNAT) domain AK40_1395 PF18416 N-acetylglucosamine binding protein domain 2 AK40_1395 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AK40_1396 PF01202 Shikimate kinase AK40_1397 PF10990 Protein of unknown function (DUF2809) AK40_1398 PF08241 Methyltransferase domain AK40_1399 PF04237 YjbR AK40_140 PF01904 Protein of unknown function DUF72 AK40_1400 PF13673 Acetyltransferase (GNAT) domain AK40_1401 PF03772 Competence protein AK40_1401 PF13567 Domain of unknown function (DUF4131) AK40_1401 PF00753 Metallo-beta-lactamase superfamily AK40_1411 PF13538 UvrD-like helicase C-terminal domain AK40_1414 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AK40_1415 PF16124 RecQ zinc-binding AK40_1415 PF00570 HRDC domain AK40_1415 PF00271 Helicase conserved C-terminal domain AK40_1415 PF00270 DEAD/DEAH box helicase AK40_1415 PF09382 RQC domain AK40_142 PF00589 Phage integrase family AK40_1423 PF02833 DHHA2 domain AK40_1423 PF01368 DHH family AK40_1424 PF18416 N-acetylglucosamine binding protein domain 2 AK40_1424 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AK40_1426 PF02627 Carboxymuconolactone decarboxylase family AK40_1427 PF01235 Sodium:alanine symporter family AK40_1428 PF00171 Aldehyde dehydrogenase family AK40_1429 PF00701 Dihydrodipicolinate synthetase family AK40_143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_143 PF00512 His Kinase A (phospho-acceptor) domain AK40_143 PF00989 PAS fold AK40_143 PF16736 Single Cache-like AK40_1430 PF05544 Proline racemase AK40_1431 PF05544 Proline racemase AK40_1432 PF01266 FAD dependent oxidoreductase AK40_1433 PF02954 Bacterial regulatory protein, Fis family AK40_1433 PF13188 PAS domain AK40_1433 PF00158 Sigma-54 interaction domain AK40_1434 PF04324 BFD-like [2Fe-2S] binding domain AK40_1434 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_1436 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_1436 PF04324 BFD-like [2Fe-2S] binding domain AK40_1439 PF08876 Domain of unknown function (DUF1836) AK40_144 PF01048 Phosphorylase superfamily AK40_1440 PF09335 SNARE associated Golgi protein AK40_1443 PF04914 DltD protein AK40_1444 PF03352 Methyladenine glycosylase AK40_1444 PF00117 Glutamine amidotransferase class-I AK40_1444 PF13302 Acetyltransferase (GNAT) domain AK40_1444 PF13673 Acetyltransferase (GNAT) domain AK40_1444 PF00958 GMP synthase C terminal domain AK40_1445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_1446 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AK40_1446 PF00877 NlpC/P60 family AK40_1447 PF13378 Enolase C-terminal domain-like AK40_1447 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK40_1451 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK40_1456 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AK40_1456 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AK40_1457 PF00989 PAS fold AK40_1457 PF00512 His Kinase A (phospho-acceptor) domain AK40_1457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1457 PF16736 Single Cache-like AK40_1458 PF00072 Response regulator receiver domain AK40_1458 PF00486 Transcriptional regulatory protein, C terminal AK40_146 PF09924 Uncharacterised conserved protein (DUF2156) AK40_146 PF03706 Lysylphosphatidylglycerol synthase TM region AK40_1462 PF01048 Phosphorylase superfamily AK40_1463 PF03808 Glycosyl transferase WecB/TagA/CpsF family AK40_1464 PF08439 Oligopeptidase F AK40_1464 PF01432 Peptidase family M3 AK40_1465 PF13520 Amino acid permease AK40_1466 PF01037 Lrp/AsnC ligand binding domain AK40_1467 PF02645 Uncharacterised protein, DegV family COG1307 AK40_1468 PF07552 Spore Coat Protein X and V domain AK40_1474 PF07690 Major Facilitator Superfamily AK40_1476 PF04519 Polymer-forming cytoskeletal AK40_1477 PF13171 Protein of unknown function (DUF4004) AK40_1478 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_1478 PF12793 Sugar transport-related sRNA regulator N-term AK40_1479 PF07690 Major Facilitator Superfamily AK40_1483 PF04226 Transglycosylase associated protein AK40_1484 PF01156 Inosine-uridine preferring nucleoside hydrolase AK40_1486 PF08241 Methyltransferase domain AK40_149 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK40_149 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK40_1492 PF00155 Aminotransferase class I and II AK40_1493 PF07977 FabA-like domain AK40_1494 PF03630 Fumble AK40_1498 PF00005 ABC transporter AK40_15 PF04748 Divergent polysaccharide deacetylase AK40_150 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_150 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_1507 PF01594 AI-2E family transporter AK40_1509 PF00296 Luciferase-like monooxygenase AK40_151 PF07670 Nucleoside recognition AK40_1510 PF00528 Binding-protein-dependent transport system inner membrane component AK40_1511 PF09084 NMT1/THI5 like AK40_1512 PF00005 ABC transporter AK40_1518 PF02522 Aminoglycoside 3-N-acetyltransferase AK40_152 PF07670 Nucleoside recognition AK40_1523 PF13536 Putative multidrug resistance efflux transporter AK40_1524 PF12867 DinB superfamily AK40_153 PF00849 RNA pseudouridylate synthase AK40_153 PF01479 S4 domain AK40_1530 PF01522 Polysaccharide deacetylase AK40_1532 PF03741 Integral membrane protein TerC family AK40_1533 PF00884 Sulfatase AK40_1534 PF00005 ABC transporter AK40_1534 PF12848 ABC transporter AK40_1536 PF03176 MMPL family AK40_1537 PF00440 Bacterial regulatory proteins, tetR family AK40_1537 PF16295 Tetracyclin repressor-like, C-terminal domain AK40_1539 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK40_154 PF00578 AhpC/TSA family AK40_1540 PF02153 Prephenate dehydrogenase AK40_1540 PF01842 ACT domain AK40_1541 PF00155 Aminotransferase class I and II AK40_1542 PF01264 Chorismate synthase AK40_1543 PF00793 DAHP synthetase I family AK40_1543 PF01817 Chorismate mutase type II AK40_1547 PF01636 Phosphotransferase enzyme family AK40_155 PF05140 ResB-like family AK40_1551 PF06725 3D domain AK40_1551 PF01476 LysM domain AK40_1554 PF00378 Enoyl-CoA hydratase/isomerase AK40_1555 PF00501 AMP-binding enzyme AK40_1555 PF13193 AMP-binding enzyme C-terminal domain AK40_1556 PF02954 Bacterial regulatory protein, Fis family AK40_1556 PF00158 Sigma-54 interaction domain AK40_1556 PF00989 PAS fold AK40_1559 PF06039 Malate:quinone oxidoreductase (Mqo) AK40_156 PF01578 Cytochrome C assembly protein AK40_1560 PF13407 Periplasmic binding protein domain AK40_1561 PF02653 Branched-chain amino acid transport system / permease component AK40_1562 PF02653 Branched-chain amino acid transport system / permease component AK40_1563 PF00005 ABC transporter AK40_1564 PF00325 Bacterial regulatory proteins, crp family AK40_1564 PF04198 Putative sugar-binding domain AK40_1565 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK40_1565 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK40_1567 PF01791 DeoC/LacD family aldolase AK40_157 PF00486 Transcriptional regulatory protein, C terminal AK40_157 PF00072 Response regulator receiver domain AK40_1572 PF03992 Antibiotic biosynthesis monooxygenase AK40_1576 PF07662 Na+ dependent nucleoside transporter C-terminus AK40_1576 PF01773 Na+ dependent nucleoside transporter N-terminus AK40_1577 PF00171 Aldehyde dehydrogenase family AK40_1578 PF01472 PUA domain AK40_1578 PF00696 Amino acid kinase family AK40_1579 PF03807 NADP oxidoreductase coenzyme F420-dependent AK40_1579 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK40_158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_158 PF00989 PAS fold AK40_158 PF18698 Histidine kinase sensor domain AK40_158 PF00512 His Kinase A (phospho-acceptor) domain AK40_158 PF00672 HAMP domain AK40_1580 PF01546 Peptidase family M20/M25/M40 AK40_1581 PF01614 Bacterial transcriptional regulator AK40_1581 PF09339 IclR helix-turn-helix domain AK40_1582 PF00324 Amino acid permease AK40_1583 PF01139 tRNA-splicing ligase RtcB AK40_1584 PF00487 Fatty acid desaturase AK40_1585 PF00245 Alkaline phosphatase AK40_1586 PF11188 Protein of unknown function (DUF2975) AK40_1587 PF13443 Cro/C1-type HTH DNA-binding domain AK40_159 PF01923 Cobalamin adenosyltransferase AK40_1590 PF10086 YhfC intramembrane metalloprotease AK40_1592 PF00072 Response regulator receiver domain AK40_1592 PF04397 LytTr DNA-binding domain AK40_1594 PF13302 Acetyltransferase (GNAT) domain AK40_1595 PF12681 Glyoxalase-like domain AK40_1599 PF17863 AAA lid domain AK40_1599 PF07726 ATPase family associated with various cellular activities (AAA) AK40_16 PF09388 Spo0E like sporulation regulatory protein AK40_160 PF01551 Peptidase family M23 AK40_1602 PF07690 Major Facilitator Superfamily AK40_1607 PF00535 Glycosyl transferase family 2 AK40_1608 PF00535 Glycosyl transferase family 2 AK40_1610 PF00202 Aminotransferase class-III AK40_1611 PF06628 Catalase-related immune-responsive AK40_1611 PF00199 Catalase AK40_1613 PF13382 Adenine deaminase C-terminal domain AK40_1613 PF01979 Amidohydrolase family AK40_1614 PF00144 Beta-lactamase AK40_162 PF12822 ECF transporter, substrate-specific component AK40_1620 PF00881 Nitroreductase family AK40_1621 PF01047 MarR family AK40_1622 PF00009 Elongation factor Tu GTP binding domain AK40_1622 PF00679 Elongation factor G C-terminus AK40_1622 PF03764 Elongation factor G, domain IV AK40_1622 PF14492 Elongation Factor G, domain II AK40_1624 PF00293 NUDIX domain AK40_1627 PF00005 ABC transporter AK40_1628 PF00392 Bacterial regulatory proteins, gntR family AK40_1631 PF02687 FtsX-like permease family AK40_1631 PF12704 MacB-like periplasmic core domain AK40_1631 PF00005 ABC transporter AK40_1636 PF12833 Helix-turn-helix domain AK40_1637 PF00583 Acetyltransferase (GNAT) family AK40_1640 PF00892 EamA-like transporter family AK40_1641 PF00155 Aminotransferase class I and II AK40_1641 PF00392 Bacterial regulatory proteins, gntR family AK40_1642 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AK40_1643 PF13031 Protein of unknown function (DUF3892) AK40_1649 PF01925 Sulfite exporter TauE/SafE AK40_165 PF00270 DEAD/DEAH box helicase AK40_165 PF00271 Helicase conserved C-terminal domain AK40_1650 PF13302 Acetyltransferase (GNAT) domain AK40_1651 PF00324 Amino acid permease AK40_1653 PF08713 DNA alkylation repair enzyme AK40_1654 PF10898 Protein of unknown function (DUF2716) AK40_1657 PF00293 NUDIX domain AK40_1658 PF04989 Cephalosporin hydroxylase AK40_1659 PF10502 Signal peptidase, peptidase S26 AK40_166 PF02517 CPBP intramembrane metalloprotease AK40_1662 PF02146 Sir2 family AK40_1663 PF01470 Pyroglutamyl peptidase AK40_1666 PF03746 LamB/YcsF family AK40_1667 PF02626 Carboxyltransferase domain, subdomain A and B AK40_1668 PF02682 Carboxyltransferase domain, subdomain C and D AK40_1669 PF09339 IclR helix-turn-helix domain AK40_1669 PF01614 Bacterial transcriptional regulator AK40_1670 PF10502 Signal peptidase, peptidase S26 AK40_1671 PF03932 CutC family AK40_1672 PF07454 Stage II sporulation protein P (SpoIIP) AK40_1675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK40_1675 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AK40_1675 PF02770 Acyl-CoA dehydrogenase, middle domain AK40_168 PF00149 Calcineurin-like phosphoesterase AK40_1682 PF10903 Protein of unknown function (DUF2691) AK40_1684 PF00440 Bacterial regulatory proteins, tetR family AK40_1685 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AK40_1685 PF00391 PEP-utilising enzyme, mobile domain AK40_1686 PF00753 Metallo-beta-lactamase superfamily AK40_1689 PF07875 Coat F domain AK40_169 PF02310 B12 binding domain AK40_169 PF02607 B12 binding domain AK40_169 PF13411 MerR HTH family regulatory protein AK40_1691 PF08892 YqcI/YcgG family AK40_1692 PF01810 LysE type translocator AK40_1693 PF00324 Amino acid permease AK40_1695 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK40_1696 PF10710 Protein of unknown function (DUF2512) AK40_1697 PF11553 Protein of unknown function (DUF3231) AK40_1698 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK40_1699 PF13823 Alcohol dehydrogenase GroES-associated AK40_1699 PF00107 Zinc-binding dehydrogenase AK40_1699 PF08240 Alcohol dehydrogenase GroES-like domain AK40_17 PF02743 Cache domain AK40_17 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_17 PF00512 His Kinase A (phospho-acceptor) domain AK40_170 PF05389 Negative regulator of genetic competence (MecA) AK40_1701 PF00206 Lyase AK40_1701 PF10415 Fumarase C C-terminus AK40_1702 PF00710 Asparaginase, N-terminal AK40_1702 PF17763 Glutaminase/Asparaginase C-terminal domain AK40_1703 PF01381 Helix-turn-helix AK40_1705 PF05504 Spore germination B3/ GerAC like, C-terminal AK40_1706 PF03845 Spore germination protein AK40_1707 PF03323 Bacillus/Clostridium GerA spore germination protein AK40_1708 PF00989 PAS fold AK40_1708 PF00512 His Kinase A (phospho-acceptor) domain AK40_1708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1708 PF13426 PAS domain AK40_1708 PF13188 PAS domain AK40_1709 PF05791 Bacillus haemolytic enterotoxin (HBL) AK40_171 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK40_171 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AK40_1710 PF05791 Bacillus haemolytic enterotoxin (HBL) AK40_1713 PF17853 GGDEF-like domain AK40_1713 PF12833 Helix-turn-helix domain AK40_1714 PF01541 GIY-YIG catalytic domain AK40_1714 PF02151 UvrB/uvrC motif AK40_1714 PF08459 UvrC Helix-hairpin-helix N-terminal AK40_1714 PF12826 Helix-hairpin-helix motif AK40_1715 PF13520 Amino acid permease AK40_1716 PF03807 NADP oxidoreductase coenzyme F420-dependent AK40_1716 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK40_1717 PF08664 YcbB domain AK40_1717 PF00072 Response regulator receiver domain AK40_1718 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1719 PF04960 Glutaminase AK40_1721 PF01235 Sodium:alanine symporter family AK40_1726 PF00144 Beta-lactamase AK40_1728 PF02872 5'-nucleotidase, C-terminal domain AK40_1728 PF17936 Bacterial Ig domain AK40_1728 PF00149 Calcineurin-like phosphoesterase AK40_1729 PF03992 Antibiotic biosynthesis monooxygenase AK40_1731 PF01609 Transposase DDE domain AK40_1732 PF01609 Transposase DDE domain AK40_1733 PF01544 CorA-like Mg2+ transporter protein AK40_1736 PF11181 Heat induced stress protein YflT AK40_1739 PF03073 TspO/MBR family AK40_1740 PF00875 DNA photolyase AK40_1740 PF03441 FAD binding domain of DNA photolyase AK40_1744 PF00512 His Kinase A (phospho-acceptor) domain AK40_1744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1745 PF00486 Transcriptional regulatory protein, C terminal AK40_1745 PF00072 Response regulator receiver domain AK40_1748 PF07690 Major Facilitator Superfamily AK40_1750 PF07859 alpha/beta hydrolase fold AK40_1752 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AK40_1753 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AK40_1753 PF00361 Proton-conducting membrane transporter AK40_1754 PF10057 Uncharacterized conserved protein (DUF2294) AK40_1757 PF07726 ATPase family associated with various cellular activities (AAA) AK40_1757 PF17863 AAA lid domain AK40_1758 PF01040 UbiA prenyltransferase family AK40_1759 PF00561 alpha/beta hydrolase fold AK40_176 PF00710 Asparaginase, N-terminal AK40_176 PF17763 Glutaminase/Asparaginase C-terminal domain AK40_1760 PF12996 DUF based on E. rectale Gene description (DUF3880) AK40_1762 PF00005 ABC transporter AK40_1763 PF02687 FtsX-like permease family AK40_1765 PF00072 Response regulator receiver domain AK40_1765 PF04397 LytTr DNA-binding domain AK40_1766 PF01297 Zinc-uptake complex component A periplasmic AK40_1767 PF00950 ABC 3 transport family AK40_1768 PF00005 ABC transporter AK40_1772 PF01451 Low molecular weight phosphotyrosine protein phosphatase AK40_1773 PF01758 Sodium Bile acid symporter family AK40_1774 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_1775 PF01022 Bacterial regulatory protein, arsR family AK40_1779 PF00012 Hsp70 protein AK40_178 PF02224 Cytidylate kinase AK40_1780 PF07690 Major Facilitator Superfamily AK40_1783 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_1787 PF00067 Cytochrome P450 AK40_1787 PF00667 FAD binding domain AK40_1787 PF00258 Flavodoxin AK40_1787 PF00175 Oxidoreductase NAD-binding domain AK40_1788 PF07690 Major Facilitator Superfamily AK40_179 PF00575 S1 RNA binding domain AK40_1793 PF00072 Response regulator receiver domain AK40_1793 PF00486 Transcriptional regulatory protein, C terminal AK40_1794 PF00512 His Kinase A (phospho-acceptor) domain AK40_1794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1794 PF00672 HAMP domain AK40_1799 PF00291 Pyridoxal-phosphate dependent enzyme AK40_18 PF01047 MarR family AK40_180 PF01070 FMN-dependent dehydrogenase AK40_1801 PF00144 Beta-lactamase AK40_1804 PF00753 Metallo-beta-lactamase superfamily AK40_1805 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AK40_1807 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK40_1807 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK40_181 PF14140 YpzI-like protein AK40_1810 PF02073 Thermophilic metalloprotease (M29) AK40_1812 PF13411 MerR HTH family regulatory protein AK40_1813 PF04072 Leucine carboxyl methyltransferase AK40_1816 PF00005 ABC transporter AK40_1817 PF02687 FtsX-like permease family AK40_1820 PF00672 HAMP domain AK40_1820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1820 PF00512 His Kinase A (phospho-acceptor) domain AK40_1821 PF00486 Transcriptional regulatory protein, C terminal AK40_1821 PF00072 Response regulator receiver domain AK40_1823 PF01047 MarR family AK40_1824 PF00583 Acetyltransferase (GNAT) family AK40_1825 PF04299 Putative FMN-binding domain AK40_1826 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_1826 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_1829 PF17676 LD-carboxypeptidase C-terminal domain AK40_1829 PF02016 LD-carboxypeptidase N-terminal domain AK40_183 PF14045 YIEGIA protein AK40_1831 PF00753 Metallo-beta-lactamase superfamily AK40_1832 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_1833 PF03413 Peptidase propeptide and YPEB domain AK40_1833 PF07504 Fungalysin/Thermolysin Propeptide Motif AK40_1833 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK40_1833 PF01447 Thermolysin metallopeptidase, catalytic domain AK40_1834 PF03009 Glycerophosphoryl diester phosphodiesterase family AK40_1836 PF02557 D-alanyl-D-alanine carboxypeptidase AK40_1837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_1837 PF00512 His Kinase A (phospho-acceptor) domain AK40_1838 PF00486 Transcriptional regulatory protein, C terminal AK40_1838 PF00072 Response regulator receiver domain AK40_1839 PF00144 Beta-lactamase AK40_1841 PF07690 Major Facilitator Superfamily AK40_1842 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK40_1842 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK40_1843 PF05116 Sucrose-6F-phosphate phosphohydrolase AK40_1844 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK40_1845 PF00356 Bacterial regulatory proteins, lacI family AK40_1846 PF18801 response regulator aspartate phosphatase H, N terminal AK40_185 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AK40_185 PF01926 50S ribosome-binding GTPase AK40_1851 PF11798 IMS family HHH motif AK40_1851 PF11799 impB/mucB/samB family C-terminal domain AK40_1851 PF00817 impB/mucB/samB family AK40_1859 PF00589 Phage integrase family AK40_1859 PF02899 Phage integrase, N-terminal SAM-like domain AK40_186 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AK40_186 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AK40_1862 PF02743 Cache domain AK40_1862 PF00672 HAMP domain AK40_1862 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_1864 PF03313 Serine dehydratase alpha chain AK40_1865 PF01842 ACT domain AK40_1865 PF03315 Serine dehydratase beta chain AK40_1866 PF02661 Fic/DOC family AK40_1867 PF00202 Aminotransferase class-III AK40_1868 PF01300 Telomere recombination AK40_1868 PF07503 HypF finger AK40_1868 PF17788 HypF Kae1-like domain AK40_1868 PF00708 Acylphosphatase AK40_1869 PF02769 AIR synthase related protein, C-terminal domain AK40_1869 PF00586 AIR synthase related protein, N-terminal domain AK40_1870 PF00857 Isochorismatase family AK40_1871 PF01037 Lrp/AsnC ligand binding domain AK40_1872 PF13520 Amino acid permease AK40_1876 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK40_1876 PF01842 ACT domain AK40_1876 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK40_1877 PF00266 Aminotransferase class-V AK40_188 PF10966 Protein of unknown function (DUF2768) AK40_1880 PF07883 Cupin domain AK40_1881 PF12833 Helix-turn-helix domain AK40_1881 PF01497 Periplasmic binding protein AK40_1884 PF04740 LXG domain of WXG superfamily AK40_1884 PF14436 Bacterial EndoU nuclease AK40_1885 PF01804 Penicillin amidase AK40_1887 PF01476 LysM domain AK40_1887 PF01510 N-acetylmuramoyl-L-alanine amidase AK40_1887 PF01471 Putative peptidoglycan binding domain AK40_1894 PF14044 NETI protein AK40_1895 PF07690 Major Facilitator Superfamily AK40_1896 PF12697 Alpha/beta hydrolase family AK40_1897 PF01047 MarR family AK40_1898 PF07690 Major Facilitator Superfamily AK40_190 PF09547 Stage IV sporulation protein A (spore_IV_A) AK40_1901 PF12679 ABC-2 family transporter protein AK40_1902 PF13732 Domain of unknown function (DUF4162) AK40_1902 PF00005 ABC transporter AK40_1903 PF13396 Phospholipase_D-nuclease N-terminal AK40_1905 PF17314 Family of unknown function (DUF5360) AK40_1906 PF00893 Small Multidrug Resistance protein AK40_1907 PF00440 Bacterial regulatory proteins, tetR family AK40_1909 PF01289 Thiol-activated cytolysin AK40_1909 PF17440 Thiol-activated cytolysin beta sandwich domain AK40_191 PF00216 Bacterial DNA-binding protein AK40_1910 PF02667 Short chain fatty acid transporter AK40_1912 PF02525 Flavodoxin-like fold AK40_1916 PF14256 YwiC-like protein AK40_1918 PF00005 ABC transporter AK40_1919 PF02361 Cobalt transport protein AK40_192 PF01227 GTP cyclohydrolase I AK40_1922 PF03737 Aldolase/RraA AK40_1923 PF03606 C4-dicarboxylate anaerobic carrier AK40_1928 PF13411 MerR HTH family regulatory protein AK40_1928 PF07739 TipAS antibiotic-recognition domain AK40_193 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AK40_1932 PF01297 Zinc-uptake complex component A periplasmic AK40_1932 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AK40_1933 PF00155 Aminotransferase class I and II AK40_1933 PF00392 Bacterial regulatory proteins, gntR family AK40_1934 PF01619 Proline dehydrogenase AK40_1935 PF01609 Transposase DDE domain AK40_1936 PF04073 Aminoacyl-tRNA editing domain AK40_1937 PF00144 Beta-lactamase AK40_1938 PF00196 Bacterial regulatory proteins, luxR family AK40_1938 PF00072 Response regulator receiver domain AK40_1939 PF03129 Anticodon binding domain AK40_1939 PF13393 Histidyl-tRNA synthetase AK40_194 PF01209 ubiE/COQ5 methyltransferase family AK40_1942 PF01638 HxlR-like helix-turn-helix AK40_1943 PF00881 Nitroreductase family AK40_1945 PF00224 Pyruvate kinase, barrel domain AK40_1945 PF00391 PEP-utilising enzyme, mobile domain AK40_1945 PF02887 Pyruvate kinase, alpha/beta domain AK40_1949 PF00005 ABC transporter AK40_195 PF00348 Polyprenyl synthetase AK40_1954 PF13419 Haloacid dehalogenase-like hydrolase AK40_1955 PF12323 Helix-turn-helix domain AK40_1955 PF01385 Probable transposase AK40_1955 PF07282 Putative transposase DNA-binding domain AK40_196 PF00334 Nucleoside diphosphate kinase AK40_1961 PF00293 NUDIX domain AK40_1961 PF13344 Haloacid dehalogenase-like hydrolase AK40_1962 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_1963 PF00480 ROK family AK40_1964 PF07690 Major Facilitator Superfamily AK40_1965 PF12464 Maltose acetyltransferase AK40_1965 PF14602 Hexapeptide repeat of succinyl-transferase AK40_1967 PF00005 ABC transporter AK40_1967 PF02687 FtsX-like permease family AK40_1967 PF12704 MacB-like periplasmic core domain AK40_1969 PF00579 tRNA synthetases class I (W and Y) AK40_197 PF01264 Chorismate synthase AK40_1970 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AK40_1970 PF13288 DXP reductoisomerase C-terminal domain AK40_1970 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AK40_1971 PF01594 AI-2E family transporter AK40_1975 PF08241 Methyltransferase domain AK40_1977 PF07690 Major Facilitator Superfamily AK40_198 PF01761 3-dehydroquinate synthase AK40_1981 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_1983 PF01595 Cyclin M transmembrane N-terminal domain AK40_1983 PF03471 Transporter associated domain AK40_1983 PF00571 CBS domain AK40_1984 PF13411 MerR HTH family regulatory protein AK40_1985 PF00892 EamA-like transporter family AK40_1986 PF00805 Pentapeptide repeats (8 copies) AK40_1987 PF06906 Protein of unknown function (DUF1272) AK40_1988 PF10282 Lactonase, 7-bladed beta-propeller AK40_1989 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK40_1989 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK40_199 PF00155 Aminotransferase class I and II AK40_1990 PF02447 GntP family permease AK40_1991 PF00923 Transaldolase/Fructose-6-phosphate aldolase AK40_1992 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK40_1992 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AK40_1993 PF02780 Transketolase, C-terminal domain AK40_1993 PF00456 Transketolase, thiamine diphosphate binding domain AK40_1993 PF02779 Transketolase, pyrimidine binding domain AK40_1994 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AK40_1994 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AK40_1996 PF03928 Haem-degrading AK40_20 PF12867 DinB superfamily AK40_2003 PF03960 ArsC family AK40_2004 PF07702 UTRA domain AK40_2004 PF00392 Bacterial regulatory proteins, gntR family AK40_2005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK40_2005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK40_201 PF08858 IDEAL domain AK40_201 PF08864 UPF0302 domain AK40_2012 PF02567 Phenazine biosynthesis-like protein AK40_2016 PF13302 Acetyltransferase (GNAT) domain AK40_2017 PF00501 AMP-binding enzyme AK40_2017 PF13193 AMP-binding enzyme C-terminal domain AK40_2018 PF02525 Flavodoxin-like fold AK40_2019 PF01638 HxlR-like helix-turn-helix AK40_202 PF10673 Protein of unknown function (DUF2487) AK40_2022 PF01022 Bacterial regulatory protein, arsR family AK40_2023 PF01522 Polysaccharide deacetylase AK40_2023 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AK40_2024 PF12791 Anti-sigma factor N-terminus AK40_2025 PF04542 Sigma-70 region 2 AK40_2026 PF02517 CPBP intramembrane metalloprotease AK40_2027 PF00440 Bacterial regulatory proteins, tetR family AK40_203 PF00355 Rieske [2Fe-2S] domain AK40_2031 PF05656 Protein of unknown function (DUF805) AK40_2036 PF01061 ABC-2 type transporter AK40_2037 PF00005 ABC transporter AK40_2037 PF13732 Domain of unknown function (DUF4162) AK40_204 PF00033 Cytochrome b/b6/petB AK40_2040 PF03063 Prismane/CO dehydrogenase family AK40_2043 PF00753 Metallo-beta-lactamase superfamily AK40_2044 PF01471 Putative peptidoglycan binding domain AK40_2044 PF01183 Glycosyl hydrolases family 25 AK40_2049 PF00144 Beta-lactamase AK40_205 PF00032 Cytochrome b(C-terminal)/b6/petD AK40_205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AK40_2057 PF00753 Metallo-beta-lactamase superfamily AK40_2058 PF08240 Alcohol dehydrogenase GroES-like domain AK40_2058 PF00107 Zinc-binding dehydrogenase AK40_2059 PF00324 Amino acid permease AK40_206 PF07187 Protein of unknown function (DUF1405) AK40_2060 PF07690 Major Facilitator Superfamily AK40_2065 PF02585 GlcNAc-PI de-N-acetylase AK40_2066 PF08830 Protein of unknown function (DUF1806) AK40_2067 PF03600 Citrate transporter AK40_2070 PF01497 Periplasmic binding protein AK40_2071 PF01032 FecCD transport family AK40_2072 PF01032 FecCD transport family AK40_2073 PF05675 Protein of unknown function (DUF817) AK40_2074 PF02567 Phenazine biosynthesis-like protein AK40_2075 PF13170 Protein of unknown function (DUF4003) AK40_2078 PF03466 LysR substrate binding domain AK40_2078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_2079 PF00107 Zinc-binding dehydrogenase AK40_2079 PF08240 Alcohol dehydrogenase GroES-like domain AK40_208 PF09577 Sporulation protein YpjB (SpoYpjB) AK40_2082 PF01713 Smr domain AK40_2082 PF00488 MutS domain V AK40_2086 PF00128 Alpha amylase, catalytic domain AK40_2086 PF09154 Domain of unknown function (DUF1939) AK40_2087 PF00797 N-acetyltransferase AK40_2088 PF01432 Peptidase family M3 AK40_2088 PF08439 Oligopeptidase F AK40_2089 PF00144 Beta-lactamase AK40_209 PF04298 Putative neutral zinc metallopeptidase AK40_2091 PF07690 Major Facilitator Superfamily AK40_2092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_2092 PF03466 LysR substrate binding domain AK40_2095 PF03009 Glycerophosphoryl diester phosphodiesterase family AK40_2099 PF01494 FAD binding domain AK40_2100 PF01022 Bacterial regulatory protein, arsR family AK40_2101 PF08240 Alcohol dehydrogenase GroES-like domain AK40_2101 PF00107 Zinc-binding dehydrogenase AK40_2102 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AK40_2103 PF18801 response regulator aspartate phosphatase H, N terminal AK40_2105 PF04299 Putative FMN-binding domain AK40_2106 PF04229 GrpB protein AK40_2108 PF01758 Sodium Bile acid symporter family AK40_2109 PF01565 FAD binding domain AK40_2109 PF02913 FAD linked oxidases, C-terminal domain AK40_211 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_211 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_2113 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_2114 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AK40_2115 PF00535 Glycosyl transferase family 2 AK40_2116 PF00378 Enoyl-CoA hydratase/isomerase AK40_2117 PF18496 Collagenase G catalytic helper subdomain AK40_2117 PF01752 Collagenase AK40_2117 PF08453 Peptidase family M9 N-terminal AK40_2118 PF02308 MgtC family AK40_212 PF03819 MazG nucleotide pyrophosphohydrolase domain AK40_2120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_2121 PF04294 VanW like protein AK40_2123 PF13037 Domain of unknown function (DUF3898) AK40_2123 PF13039 Protein of unknown function (DUF3900) AK40_2126 PF00313 'Cold-shock' DNA-binding domain AK40_2128 PF00258 Flavodoxin AK40_213 PF01113 Dihydrodipicolinate reductase, N-terminus AK40_213 PF05173 Dihydrodipicolinate reductase, C-terminus AK40_2134 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_2136 PF00106 short chain dehydrogenase AK40_2138 PF14698 Argininosuccinate lyase C-terminal AK40_2138 PF00206 Lyase AK40_214 PF02142 MGS-like domain AK40_2140 PF01156 Inosine-uridine preferring nucleoside hydrolase AK40_2141 PF00474 Sodium:solute symporter family AK40_2143 PF00171 Aldehyde dehydrogenase family AK40_2145 PF14151 YfhD-like protein AK40_2146 PF13243 Squalene-hopene cyclase C-terminal domain AK40_2146 PF13249 Squalene-hopene cyclase N-terminal domain AK40_2147 PF02681 Divergent PAP2 family AK40_2148 PF00892 EamA-like transporter family AK40_2149 PF06961 Protein of unknown function (DUF1294) AK40_215 PF02585 GlcNAc-PI de-N-acetylase AK40_2152 PF10609 NUBPL iron-transfer P-loop NTPase AK40_2154 PF02391 MoaE protein AK40_2155 PF03453 MoeA N-terminal region (domain I and II) AK40_2155 PF03454 MoeA C-terminal region (domain IV) AK40_2155 PF00994 Probable molybdopterin binding domain AK40_2156 PF00899 ThiF family AK40_2157 PF01226 Formate/nitrite transporter AK40_2158 PF06463 Molybdenum Cofactor Synthesis C AK40_2158 PF04055 Radical SAM superfamily AK40_2159 PF02634 FdhD/NarQ family AK40_216 PF13439 Glycosyltransferase Family 4 AK40_216 PF00534 Glycosyl transferases group 1 AK40_2160 PF10057 Uncharacterized conserved protein (DUF2294) AK40_2161 PF07849 Protein of unknown function (DUF1641) AK40_2162 PF00037 4Fe-4S binding domain AK40_2162 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK40_2162 PF00384 Molybdopterin oxidoreductase AK40_2162 PF01568 Molydopterin dinucleotide binding domain AK40_2162 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK40_2164 PF03323 Bacillus/Clostridium GerA spore germination protein AK40_217 PF12627 Probable RNA and SrmB- binding site of polymerase A AK40_217 PF01743 Poly A polymerase head domain AK40_217 PF13735 tRNA nucleotidyltransferase domain 2 putative AK40_2172 PF08241 Methyltransferase domain AK40_2173 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_2174 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_2175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_2176 PF00375 Sodium:dicarboxylate symporter family AK40_2177 PF03816 Cell envelope-related transcriptional attenuator domain AK40_2179 PF08281 Sigma-70, region 4 AK40_2179 PF04542 Sigma-70 region 2 AK40_218 PF08279 HTH domain AK40_218 PF03099 Biotin/lipoate A/B protein ligase family AK40_218 PF02237 Biotin protein ligase C terminal domain AK40_2183 PF00005 ABC transporter AK40_2183 PF13732 Domain of unknown function (DUF4162) AK40_2185 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AK40_2185 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK40_2187 PF00521 DNA gyrase/topoisomerase IV, subunit A AK40_2187 PF03989 DNA gyrase C-terminal domain, beta-propeller AK40_2188 PF00204 DNA gyrase B AK40_2188 PF00986 DNA gyrase B subunit, carboxyl terminus AK40_2188 PF01751 Toprim domain AK40_2188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_2189 PF13380 CoA binding domain AK40_2190 PF13180 PDZ domain AK40_2191 PF00486 Transcriptional regulatory protein, C terminal AK40_2191 PF00072 Response regulator receiver domain AK40_2193 PF03477 ATP cone domain AK40_2193 PF13597 Anaerobic ribonucleoside-triphosphate reductase AK40_2194 PF02660 Glycerol-3-phosphate acyltransferase AK40_2195 PF01521 Iron-sulphur cluster biosynthesis AK40_2196 PF03061 Thioesterase superfamily AK40_2197 PF00704 Glycosyl hydrolases family 18 AK40_2197 PF01476 LysM domain AK40_2199 PF08177 Small acid-soluble spore protein N family AK40_22 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_22 PF00512 His Kinase A (phospho-acceptor) domain AK40_22 PF00989 PAS fold AK40_22 PF13188 PAS domain AK40_22 PF13426 PAS domain AK40_220 PF02548 Ketopantoate hydroxymethyltransferase AK40_2200 PF13040 Fur-regulated basic protein B AK40_2201 PF02811 PHP domain AK40_2201 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK40_2201 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK40_2201 PF01336 OB-fold nucleic acid binding domain AK40_2201 PF11490 DNA polymerase III polC-type N-terminus II AK40_2201 PF14579 Helix-hairpin-helix motif AK40_2201 PF00929 Exonuclease AK40_2202 PF00578 AhpC/TSA family AK40_2204 PF00664 ABC transporter transmembrane region AK40_2204 PF00005 ABC transporter AK40_2205 PF02899 Phage integrase, N-terminal SAM-like domain AK40_2205 PF00589 Phage integrase family AK40_2206 PF00589 Phage integrase family AK40_221 PF02569 Pantoate-beta-alanine ligase AK40_2210 PF00694 Aconitase C-terminal domain AK40_2210 PF00330 Aconitase family (aconitate hydratase) AK40_2212 PF01522 Polysaccharide deacetylase AK40_2214 PF08179 Small acid-soluble spore protein P family AK40_2216 PF07690 Major Facilitator Superfamily AK40_2218 PF01411 tRNA synthetases class II (A) AK40_2218 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK40_2218 PF02272 DHHA1 domain AK40_2219 PF00293 NUDIX domain AK40_2219 PF13344 Haloacid dehalogenase-like hydrolase AK40_222 PF02261 Aspartate decarboxylase AK40_2221 PF00108 Thiolase, N-terminal domain AK40_2221 PF02803 Thiolase, C-terminal domain AK40_2222 PF00501 AMP-binding enzyme AK40_2222 PF13193 AMP-binding enzyme C-terminal domain AK40_2223 PF02632 BioY family AK40_2224 PF00501 AMP-binding enzyme AK40_2224 PF13193 AMP-binding enzyme C-terminal domain AK40_2229 PF05532 CsbD-like AK40_223 PF04851 Type III restriction enzyme, res subunit AK40_223 PF13307 Helicase C-terminal domain AK40_223 PF00929 Exonuclease AK40_2234 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_2234 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_2236 PF00512 His Kinase A (phospho-acceptor) domain AK40_2236 PF00989 PAS fold AK40_2236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_2236 PF13426 PAS domain AK40_2236 PF13188 PAS domain AK40_2237 PF01738 Dienelactone hydrolase family AK40_2238 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_2239 PF00474 Sodium:solute symporter family AK40_224 PF14084 Protein of unknown function (DUF4264) AK40_2240 PF01645 Conserved region in glutamate synthase AK40_2241 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AK40_2242 PF02559 CarD-like/TRCF domain AK40_2243 PF00491 Arginase family AK40_2244 PF01979 Amidohydrolase family AK40_2245 PF17391 Urocanase N-terminal domain AK40_2245 PF17392 Urocanase C-terminal domain AK40_2245 PF01175 Urocanase Rossmann-like domain AK40_2246 PF00221 Aromatic amino acid lyase AK40_2247 PF09021 HutP AK40_2248 PF01209 ubiE/COQ5 methyltransferase family AK40_2252 PF11084 Protein of unknown function (DUF2621) AK40_2256 PF07301 Protein of unknown function (DUF1453) AK40_2257 PF02683 Cytochrome C biogenesis protein transmembrane region AK40_226 PF00155 Aminotransferase class I and II AK40_2261 PF00005 ABC transporter AK40_2263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_2263 PF03466 LysR substrate binding domain AK40_2264 PF03788 LrgA family AK40_2265 PF04172 LrgB-like family AK40_2269 PF01925 Sulfite exporter TauE/SafE AK40_227 PF07261 Replication initiation and membrane attachment AK40_2271 PF01510 N-acetylmuramoyl-L-alanine amidase AK40_2271 PF01471 Putative peptidoglycan binding domain AK40_2274 PF00664 ABC transporter transmembrane region AK40_2274 PF00005 ABC transporter AK40_2275 PF00664 ABC transporter transmembrane region AK40_2275 PF00005 ABC transporter AK40_2276 PF03672 Uncharacterised protein family (UPF0154) AK40_2277 PF10747 Sporulation inhibitor of replication protein SirA AK40_2278 PF00456 Transketolase, thiamine diphosphate binding domain AK40_2278 PF02779 Transketolase, pyrimidine binding domain AK40_2278 PF02780 Transketolase, C-terminal domain AK40_2279 PF00528 Binding-protein-dependent transport system inner membrane component AK40_228 PF00730 HhH-GPD superfamily base excision DNA repair protein AK40_228 PF10576 Iron-sulfur binding domain of endonuclease III AK40_228 PF00633 Helix-hairpin-helix motif AK40_2280 PF00528 Binding-protein-dependent transport system inner membrane component AK40_2281 PF00005 ABC transporter AK40_2283 PF00149 Calcineurin-like phosphoesterase AK40_2283 PF02872 5'-nucleotidase, C-terminal domain AK40_2284 PF05979 Bacterial protein of unknown function (DUF896) AK40_2285 PF00239 Resolvase, N terminal domain AK40_2286 PF00717 Peptidase S24-like AK40_2286 PF01726 LexA DNA binding domain AK40_2289 PF03551 Transcriptional regulator PadR-like family AK40_2290 PF00120 Glutamine synthetase, catalytic domain AK40_2290 PF03951 Glutamine synthetase, beta-Grasp domain AK40_2291 PF13411 MerR HTH family regulatory protein AK40_2292 PF06838 Methionine gamma-lyase AK40_2293 PF16360 GTP-binding GTPase Middle Region AK40_2293 PF01926 50S ribosome-binding GTPase AK40_2293 PF13167 GTP-binding GTPase N-terminal AK40_2294 PF03458 UPF0126 domain AK40_2296 PF17866 AAA lid domain AK40_2296 PF00004 ATPase family associated with various cellular activities (AAA) AK40_2299 PF17209 Hfq protein AK40_23 PF06508 Queuosine biosynthesis protein QueC AK40_230 PF00912 Transglycosylase AK40_230 PF00905 Penicillin binding protein transpeptidase domain AK40_2302 PF06725 3D domain AK40_2302 PF01476 LysM domain AK40_2303 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK40_2303 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK40_2304 PF00294 pfkB family carbohydrate kinase AK40_2305 PF08220 DeoR-like helix-turn-helix domain AK40_2305 PF00455 DeoR C terminal sensor domain AK40_2306 PF00465 Iron-containing alcohol dehydrogenase AK40_2307 PF04238 Protein of unknown function (DUF420) AK40_231 PF03838 Recombination protein U AK40_2310 PF00324 Amino acid permease AK40_2311 PF00704 Glycosyl hydrolases family 18 AK40_2311 PF00041 Fibronectin type III domain AK40_2313 PF00149 Calcineurin-like phosphoesterase AK40_2313 PF10518 TAT (twin-arginine translocation) pathway signal sequence AK40_2314 PF01226 Formate/nitrite transporter AK40_2315 PF00216 Bacterial DNA-binding protein AK40_2316 PF00403 Heavy-metal-associated domain AK40_2317 PF00403 Heavy-metal-associated domain AK40_2318 PF02583 Metal-sensitive transcriptional repressor AK40_232 PF10720 Protein of unknown function (DUF2515) AK40_2320 PF00756 Putative esterase AK40_2321 PF00005 ABC transporter AK40_2322 PF01032 FecCD transport family AK40_2323 PF01032 FecCD transport family AK40_2324 PF01497 Periplasmic binding protein AK40_2325 PF03372 Endonuclease/Exonuclease/phosphatase family AK40_2326 PF02805 Metal binding domain of Ada AK40_2326 PF12833 Helix-turn-helix domain AK40_2327 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AK40_2327 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AK40_2328 PF00730 HhH-GPD superfamily base excision DNA repair protein AK40_2328 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AK40_2329 PF07687 Peptidase dimerisation domain AK40_2329 PF01546 Peptidase family M20/M25/M40 AK40_2333 PF00561 alpha/beta hydrolase fold AK40_2334 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_2335 PF00990 Diguanylate cyclase, GGDEF domain AK40_2335 PF00563 EAL domain AK40_2335 PF03707 Bacterial signalling protein N terminal repeat AK40_2336 PF03033 Glycosyltransferase family 28 N-terminal domain AK40_2336 PF04101 Glycosyltransferase family 28 C-terminal domain AK40_2338 PF16363 GDP-mannose 4,6 dehydratase AK40_2339 PF08485 Polysaccharide biosynthesis protein C-terminal AK40_2339 PF02719 Polysaccharide biosynthesis protein AK40_2343 PF10787 Uncharacterised protein from bacillus cereus group AK40_2344 PF03788 LrgA family AK40_2345 PF00155 Aminotransferase class I and II AK40_2345 PF00392 Bacterial regulatory proteins, gntR family AK40_2347 PF00388 Phosphatidylinositol-specific phospholipase C, X domain AK40_2348 PF00082 Subtilase family AK40_2349 PF07486 Cell Wall Hydrolase AK40_2352 PF00884 Sulfatase AK40_2353 PF00350 Dynamin family AK40_2355 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AK40_2356 PF08676 MutL C terminal dimerisation domain AK40_2356 PF01119 DNA mismatch repair protein, C-terminal domain AK40_2357 PF05190 MutS family domain IV AK40_2357 PF00488 MutS domain V AK40_2357 PF01624 MutS domain I AK40_2357 PF05188 MutS domain II AK40_2357 PF05192 MutS domain III AK40_2358 PF10628 Outer spore coat protein E (CotE) AK40_2359 PF06133 Control of competence regulator ComK, YlbF/YmcA AK40_2360 PF04055 Radical SAM superfamily AK40_2360 PF00919 Uncharacterized protein family UPF0004 AK40_2360 PF01938 TRAM domain AK40_2361 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_2362 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AK40_2362 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AK40_2362 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AK40_2363 PF01244 Membrane dipeptidase (Peptidase family M19) AK40_2364 PF04232 Stage V sporulation protein S (SpoVS) AK40_2365 PF13277 YmdB-like protein AK40_2366 PF12072 Domain of unknown function (DUF3552) AK40_2366 PF00013 KH domain AK40_2366 PF01966 HD domain AK40_2367 PF00154 recA bacterial DNA recombination protein AK40_2368 PF00154 recA bacterial DNA recombination protein AK40_2369 PF02464 Competence-damaged protein AK40_2369 PF00994 Probable molybdopterin binding domain AK40_2369 PF18146 Damage-inducible protein CinA KH domain AK40_2370 PF01066 CDP-alcohol phosphatidyltransferase AK40_2371 PF13464 Domain of unknown function (DUF4115) AK40_2372 PF11868 Protein of unknown function (DUF3388) AK40_2373 PF11588 Protein of unknown function (DUF3243) AK40_2375 PF05193 Peptidase M16 inactive domain AK40_2375 PF00675 Insulinase (Peptidase family M16) AK40_2376 PF05193 Peptidase M16 inactive domain AK40_2381 PF07702 UTRA domain AK40_2381 PF00392 Bacterial regulatory proteins, gntR family AK40_2382 PF17854 FtsK alpha domain AK40_2382 PF09397 Ftsk gamma domain AK40_2382 PF01580 FtsK/SpoIIIE family AK40_2383 PF14035 YlzJ-like protein AK40_2384 PF00574 Clp protease AK40_2385 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AK40_2385 PF17770 Ribonuclease J C-terminal domain AK40_2385 PF00753 Metallo-beta-lactamase superfamily AK40_2386 PF00701 Dihydrodipicolinate synthetase family AK40_2387 PF00696 Amino acid kinase family AK40_2387 PF13840 ACT domain AK40_2388 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK40_2388 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK40_2389 PF02441 Flavoprotein AK40_239 PF06908 YspA SLOG family AK40_2390 PF16924 Dipicolinate synthase subunit A N-terminal domain AK40_2390 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AK40_2391 PF05239 PRC-barrel domain AK40_2392 PF05193 Peptidase M16 inactive domain AK40_2392 PF00675 Insulinase (Peptidase family M16) AK40_2393 PF01522 Polysaccharide deacetylase AK40_2394 PF00575 S1 RNA binding domain AK40_2394 PF00013 KH domain AK40_2394 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AK40_2394 PF01138 3' exoribonuclease family, domain 1 AK40_2394 PF03725 3' exoribonuclease family, domain 2 AK40_2395 PF00312 Ribosomal protein S15 AK40_2396 PF01687 Riboflavin kinase AK40_2396 PF06574 FAD synthetase AK40_2397 PF01509 TruB family pseudouridylate synthase (N terminal domain) AK40_2397 PF16198 tRNA pseudouridylate synthase B C-terminal domain AK40_2398 PF02033 Ribosome-binding factor A AK40_2399 PF04456 Protein of unknown function (DUF503) AK40_24 PF01242 6-pyruvoyl tetrahydropterin synthase AK40_240 PF05103 DivIVA protein AK40_2400 PF11987 Translation-initiation factor 2 AK40_2400 PF04760 Translation initiation factor IF-2, N-terminal region AK40_2400 PF00009 Elongation factor Tu GTP binding domain AK40_2401 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AK40_2402 PF04296 Protein of unknown function (DUF448) AK40_2403 PF08529 NusA N-terminal domain AK40_2403 PF13184 NusA-like KH domain AK40_2403 PF00575 S1 RNA binding domain AK40_2404 PF17384 RimP C-terminal SH3 domain AK40_2404 PF02576 RimP N-terminal domain AK40_2405 PF02811 PHP domain AK40_2405 PF14480 DNA polymerase III polC-type N-terminus I AK40_2405 PF11490 DNA polymerase III polC-type N-terminus II AK40_2405 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK40_2405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK40_2405 PF14579 Helix-hairpin-helix motif AK40_2405 PF00929 Exonuclease AK40_2406 PF01348 Type II intron maturase AK40_2406 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AK40_2408 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK40_2408 PF14579 Helix-hairpin-helix motif AK40_2408 PF11490 DNA polymerase III polC-type N-terminus II AK40_2408 PF02811 PHP domain AK40_2408 PF00929 Exonuclease AK40_2408 PF14480 DNA polymerase III polC-type N-terminus I AK40_2408 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK40_2409 PF03129 Anticodon binding domain AK40_2409 PF04073 Aminoacyl-tRNA editing domain AK40_2409 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK40_241 PF02926 THUMP domain AK40_241 PF01170 Putative RNA methylase family UPF0020 AK40_2410 PF02163 Peptidase family M50 AK40_2410 PF17820 PDZ domain AK40_2411 PF13288 DXP reductoisomerase C-terminal domain AK40_2411 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AK40_2411 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AK40_2413 PF01255 Putative undecaprenyl diphosphate synthase AK40_2414 PF01765 Ribosome recycling factor AK40_2415 PF00696 Amino acid kinase family AK40_2416 PF00889 Elongation factor TS AK40_2417 PF00318 Ribosomal protein S2 AK40_2418 PF06018 CodY GAF-like domain AK40_2418 PF08222 CodY helix-turn-helix domain AK40_2419 PF07724 AAA domain (Cdc48 subfamily) AK40_2419 PF10431 C-terminal, D2-small domain, of ClpB protein AK40_2419 PF00004 ATPase family associated with various cellular activities (AAA) AK40_2420 PF00227 Proteasome subunit AK40_2421 PF02899 Phage integrase, N-terminal SAM-like domain AK40_2421 PF00589 Phage integrase family AK40_2422 PF01134 Glucose inhibited division protein A AK40_2423 PF01396 Topoisomerase DNA binding C4 zinc finger AK40_2423 PF01751 Toprim domain AK40_2423 PF01131 DNA topoisomerase AK40_2424 PF02481 DNA recombination-mediator protein A AK40_2425 PF02629 CoA binding domain AK40_2425 PF00549 CoA-ligase AK40_2426 PF00549 CoA-ligase AK40_2426 PF08442 ATP-grasp domain AK40_2427 PF01351 Ribonuclease HII AK40_2428 PF01926 50S ribosome-binding GTPase AK40_2429 PF10502 Signal peptidase, peptidase S26 AK40_243 PF13307 Helicase C-terminal domain AK40_2430 PF01245 Ribosomal protein L19 AK40_2431 PF01746 tRNA (Guanine-1)-methyltransferase AK40_2432 PF05239 PRC-barrel domain AK40_2432 PF01782 RimM N-terminal domain AK40_2434 PF00886 Ribosomal protein S16 AK40_2435 PF00448 SRP54-type protein, GTPase domain AK40_2435 PF02881 SRP54-type protein, helical bundle domain AK40_2435 PF02978 Signal peptide binding domain AK40_2436 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AK40_2437 PF02881 SRP54-type protein, helical bundle domain AK40_2437 PF00448 SRP54-type protein, GTPase domain AK40_2438 PF06470 SMC proteins Flexible Hinge Domain AK40_2438 PF02463 RecF/RecN/SMC N terminal domain AK40_2439 PF14622 Ribonuclease-III-like AK40_2439 PF00035 Double-stranded RNA binding motif AK40_244 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AK40_2440 PF00550 Phosphopantetheine attachment site AK40_2442 PF00698 Acyl transferase domain AK40_2443 PF02504 Fatty acid synthesis protein AK40_2444 PF03061 Thioesterase superfamily AK40_2445 PF00271 Helicase conserved C-terminal domain AK40_2445 PF00270 DEAD/DEAH box helicase AK40_2445 PF17191 RecG wedge domain AK40_2446 PF13684 Dihydroxyacetone kinase family AK40_2446 PF02734 DAK2 domain AK40_2447 PF03780 Asp23 family, cell envelope-related function AK40_2448 PF00830 Ribosomal L28 family AK40_2449 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AK40_2449 PF04263 Thiamin pyrophosphokinase, catalytic domain AK40_2450 PF00834 Ribulose-phosphate 3 epimerase family AK40_2451 PF16745 RsgA N-terminal domain AK40_2451 PF03193 RsgA GTPase AK40_2452 PF00069 Protein kinase domain AK40_2452 PF03793 PASTA domain AK40_2454 PF04055 Radical SAM superfamily AK40_2455 PF01029 NusB family AK40_2455 PF01189 16S rRNA methyltransferase RsmB/F AK40_2456 PF00551 Formyl transferase AK40_2456 PF02911 Formyl transferase, C-terminal domain AK40_2457 PF01327 Polypeptide deformylase AK40_2458 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AK40_2458 PF18074 Primosomal protein N C-terminal domain AK40_2458 PF17764 3′ DNA-binding domain (3′BD) AK40_2458 PF00271 Helicase conserved C-terminal domain AK40_2458 PF04851 Type III restriction enzyme, res subunit AK40_2459 PF04127 DNA / pantothenate metabolism flavoprotein AK40_2459 PF02441 Flavoprotein AK40_246 PF01636 Phosphotransferase enzyme family AK40_2460 PF01192 RNA polymerase Rpb6 AK40_2461 PF00625 Guanylate kinase AK40_2462 PF04025 Domain of unknown function (DUF370) AK40_2463 PF03755 YicC-like family, N-terminal region AK40_2463 PF08340 Domain of unknown function (DUF1732) AK40_2464 PF00690 Cation transporter/ATPase, N-terminus AK40_2464 PF00689 Cation transporting ATPase, C-terminus AK40_2466 PF01321 Creatinase/Prolidase N-terminal domain AK40_2466 PF00557 Metallopeptidase family M24 AK40_247 PF00557 Metallopeptidase family M24 AK40_2472 PF13419 Haloacid dehalogenase-like hydrolase AK40_2473 PF00156 Phosphoribosyl transferase domain AK40_2474 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AK40_2475 PF01180 Dihydroorotate dehydrogenase AK40_2476 PF00175 Oxidoreductase NAD-binding domain AK40_2476 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AK40_2477 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK40_2477 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AK40_2477 PF02142 MGS-like domain AK40_2478 PF00117 Glutamine amidotransferase class-I AK40_2478 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AK40_2479 PF01979 Amidohydrolase family AK40_248 PF00156 Phosphoribosyl transferase domain AK40_2480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AK40_2480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AK40_2481 PF00860 Permease family AK40_2482 PF00156 Phosphoribosyl transferase domain AK40_2483 PF01479 S4 domain AK40_2483 PF00849 RNA pseudouridylate synthase AK40_2484 PF01252 Signal peptidase (SPase) II AK40_2486 PF00133 tRNA synthetases class I (I, L, M and V) AK40_2486 PF06827 Zinc finger found in FPG and IleRS AK40_2486 PF08264 Anticodon-binding domain of tRNA AK40_2487 PF05103 DivIVA protein AK40_2488 PF17774 Putative RNA-binding domain in YlmH AK40_2488 PF01479 S4 domain AK40_2489 PF02325 YGGT family AK40_249 PF00860 Permease family AK40_2490 PF04472 Cell division protein SepF AK40_2491 PF01168 Alanine racemase, N-terminal domain AK40_2493 PF05239 PRC-barrel domain AK40_2494 PF04542 Sigma-70 region 2 AK40_2494 PF04539 Sigma-70 region 3 AK40_2494 PF04545 Sigma-70, region 4 AK40_2495 PF04542 Sigma-70 region 2 AK40_2495 PF04545 Sigma-70, region 4 AK40_2496 PF03419 Sporulation factor SpoIIGA AK40_2497 PF12327 FtsZ family, C-terminal domain AK40_2497 PF00091 Tubulin/FtsZ family, GTPase domain AK40_2498 PF02491 SHS2 domain inserted in FTSA AK40_2499 PF08478 POTRA domain, FtsQ-type AK40_2499 PF03799 Cell division protein FtsQ AK40_25 PF04055 Radical SAM superfamily AK40_250 PF04235 Protein of unknown function (DUF418) AK40_2500 PF01565 FAD binding domain AK40_2500 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AK40_2501 PF03033 Glycosyltransferase family 28 N-terminal domain AK40_2501 PF04101 Glycosyltransferase family 28 C-terminal domain AK40_2502 PF01098 Cell cycle protein AK40_2503 PF02875 Mur ligase family, glutamate ligase domain AK40_2503 PF08245 Mur ligase middle domain AK40_2504 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AK40_2504 PF00953 Glycosyl transferase family 4 AK40_2505 PF01225 Mur ligase family, catalytic domain AK40_2505 PF02875 Mur ligase family, glutamate ligase domain AK40_2505 PF08245 Mur ligase middle domain AK40_2506 PF03793 PASTA domain AK40_2506 PF00905 Penicillin binding protein transpeptidase domain AK40_2506 PF03717 Penicillin-binding Protein dimerisation domain AK40_2508 PF04977 Septum formation initiator AK40_2509 PF01795 MraW methylase family AK40_2510 PF10079 Bacillithiol biosynthesis BshC AK40_2511 PF08546 Ketopantoate reductase PanE/ApbA C terminal AK40_2511 PF02558 Ketopantoate reductase PanE/ApbA AK40_2512 PF00583 Acetyltransferase (GNAT) family AK40_2514 PF01783 Ribosomal L32p protein family AK40_2515 PF02620 Large ribosomal RNA subunit accumulation protein YceD AK40_2516 PF05636 HIGH Nucleotidyl Transferase AK40_2517 PF13180 PDZ domain AK40_2517 PF05362 Lon protease (S16) C-terminal proteolytic domain AK40_2518 PF01734 Patatin-like phospholipase AK40_2519 PF01467 Cytidylyltransferase-like AK40_252 PF00350 Dynamin family AK40_2520 PF07670 Nucleoside recognition AK40_2523 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AK40_2524 PF06133 Control of competence regulator ComK, YlbF/YmcA AK40_2525 PF00300 Histidine phosphatase superfamily (branch 1) AK40_2526 PF14003 YlbE-like protein AK40_2527 PF14071 Putative coat protein AK40_2528 PF14504 CAP-associated N-terminal AK40_2528 PF00188 Cysteine-rich secretory protein family AK40_2529 PF08868 YugN-like family AK40_2530 PF00795 Carbon-nitrogen hydrolase AK40_2531 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AK40_2532 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AK40_2533 PF00510 Cytochrome c oxidase subunit III AK40_2534 PF00115 Cytochrome C and Quinol oxidase polypeptide I AK40_2535 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AK40_2535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AK40_2535 PF00034 Cytochrome c AK40_2536 PF01040 UbiA prenyltransferase family AK40_2537 PF02628 Cytochrome oxidase assembly protein AK40_2538 PF00682 HMGL-like AK40_2538 PF00364 Biotin-requiring enzyme AK40_2538 PF02436 Conserved carboxylase domain AK40_2538 PF00289 Biotin carboxylase, N-terminal domain AK40_2538 PF02785 Biotin carboxylase C-terminal domain AK40_2538 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK40_2539 PF01098 Cell cycle protein AK40_254 PF00583 Acetyltransferase (GNAT) family AK40_2540 PF07408 Protein of unknown function (DUF1507) AK40_2542 PF13638 PIN domain AK40_2542 PF02562 PhoH-like protein AK40_2544 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AK40_2546 PF14036 YlaH-like protein AK40_2549 PF00459 Inositol monophosphatase family AK40_255 PF10752 Protein of unknown function (DUF2533) AK40_2551 PF06335 Protein of unknown function (DUF1054) AK40_2552 PF05256 Uncharacterised protein family (UPF0223) AK40_2553 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AK40_2553 PF01276 Orn/Lys/Arg decarboxylase, major domain AK40_256 PF00581 Rhodanese-like domain AK40_2561 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK40_2561 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_2562 PF00364 Biotin-requiring enzyme AK40_2562 PF02817 e3 binding domain AK40_2562 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK40_2563 PF02779 Transketolase, pyrimidine binding domain AK40_2563 PF02780 Transketolase, C-terminal domain AK40_2564 PF00676 Dehydrogenase E1 component AK40_2566 PF01327 Polypeptide deformylase AK40_2569 PF00753 Metallo-beta-lactamase superfamily AK40_2569 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AK40_2569 PF17770 Ribonuclease J C-terminal domain AK40_2570 PF02254 TrkA-N domain AK40_2570 PF02080 TrkA-C domain AK40_2572 PF01546 Peptidase family M20/M25/M40 AK40_2572 PF07687 Peptidase dimerisation domain AK40_2573 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AK40_2573 PF14602 Hexapeptide repeat of succinyl-transferase AK40_2573 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_2574 PF03466 LysR substrate binding domain AK40_2574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_2577 PF04308 Ribonuclease H-like AK40_2579 PF08796 Protein of unknown function (DUF1797) AK40_2582 PF10388 EAL-domain associated signalling protein domain AK40_2582 PF00563 EAL domain AK40_2584 PF00149 Calcineurin-like phosphoesterase AK40_2584 PF10518 TAT (twin-arginine translocation) pathway signal sequence AK40_2586 PF13090 Polyphosphate kinase C-terminal domain 2 AK40_2586 PF17941 Polyphosphate kinase C-terminal domain 1 AK40_2586 PF02503 Polyphosphate kinase middle domain AK40_2586 PF13089 Polyphosphate kinase N-terminal domain AK40_2587 PF02541 Ppx/GppA phosphatase family AK40_2588 PF14177 YkyB-like protein AK40_2593 PF07690 Major Facilitator Superfamily AK40_2595 PF01717 Cobalamin-independent synthase, Catalytic domain AK40_2595 PF08267 Cobalamin-independent synthase, N-terminal domain AK40_2597 PF14040 Deoxyribonuclease NucA/NucB AK40_2599 PF00512 His Kinase A (phospho-acceptor) domain AK40_2599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_26 PF14489 QueF-like protein AK40_260 PF03738 Glutathionylspermidine synthase preATP-grasp AK40_2601 PF00155 Aminotransferase class I and II AK40_2602 PF00356 Bacterial regulatory proteins, lacI family AK40_2602 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK40_2603 PF00528 Binding-protein-dependent transport system inner membrane component AK40_2604 PF00528 Binding-protein-dependent transport system inner membrane component AK40_2605 PF13416 Bacterial extracellular solute-binding protein AK40_2606 PF00128 Alpha amylase, catalytic domain AK40_2606 PF02903 Alpha amylase, N-terminal ig-like domain AK40_2606 PF16657 Maltogenic Amylase, C-terminal domain AK40_2607 PF00128 Alpha amylase, catalytic domain AK40_2607 PF16657 Maltogenic Amylase, C-terminal domain AK40_2608 PF17912 MalK OB fold domain AK40_2608 PF00005 ABC transporter AK40_2608 PF03459 TOBE domain AK40_2617 PF00108 Thiolase, N-terminal domain AK40_2617 PF02803 Thiolase, C-terminal domain AK40_2618 PF00293 NUDIX domain AK40_262 PF00689 Cation transporting ATPase, C-terminus AK40_262 PF00690 Cation transporter/ATPase, N-terminus AK40_2623 PF03551 Transcriptional regulator PadR-like family AK40_2627 PF01636 Phosphotransferase enzyme family AK40_2628 PF00795 Carbon-nitrogen hydrolase AK40_2629 PF00155 Aminotransferase class I and II AK40_263 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK40_263 PF01367 5'-3' exonuclease, C-terminal SAM fold AK40_2630 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AK40_2630 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AK40_2632 PF00596 Class II Aldolase and Adducin N-terminal domain AK40_2633 PF03079 ARD/ARD' family AK40_2636 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK40_2636 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK40_2637 PF00990 Diguanylate cyclase, GGDEF domain AK40_2638 PF00881 Nitroreductase family AK40_2641 PF05524 PEP-utilising enzyme, N-terminal AK40_2641 PF02896 PEP-utilising enzyme, TIM barrel domain AK40_2641 PF00391 PEP-utilising enzyme, mobile domain AK40_2642 PF00381 PTS HPr component phosphorylation site AK40_2643 PF02378 Phosphotransferase system, EIIC AK40_2643 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK40_2643 PF00367 phosphotransferase system, EIIB AK40_2644 PF00874 PRD domain AK40_2644 PF03123 CAT RNA binding domain AK40_2647 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AK40_2648 PF01979 Amidohydrolase family AK40_2650 PF04079 Segregation and condensation complex subunit ScpB AK40_2651 PF02616 Segregation and condensation protein ScpA AK40_2653 PF03745 Domain of unknown function (DUF309) AK40_2654 PF00583 Acetyltransferase (GNAT) family AK40_2655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AK40_2656 PF06207 Protein of unknown function (DUF1002) AK40_2658 PF03323 Bacillus/Clostridium GerA spore germination protein AK40_2659 PF14097 Stage V sporulation protein AE1 AK40_266 PF18014 Acetyltransferase (GNAT) domain AK40_266 PF13673 Acetyltransferase (GNAT) domain AK40_2660 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK40_2661 PF07451 Stage V sporulation protein AD (SpoVAD) AK40_2662 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK40_2663 PF13782 Stage V sporulation protein AB AK40_2664 PF12164 Stage V sporulation protein AA AK40_2666 PF00209 Sodium:neurotransmitter symporter family AK40_2667 PF04545 Sigma-70, region 4 AK40_2667 PF04542 Sigma-70 region 2 AK40_2667 PF04539 Sigma-70 region 3 AK40_2668 PF13581 Histidine kinase-like ATPase domain AK40_2669 PF01740 STAS domain AK40_2670 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_2670 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_2671 PF00392 Bacterial regulatory proteins, gntR family AK40_2672 PF00005 ABC transporter AK40_2675 PF01047 MarR family AK40_2677 PF00860 Permease family AK40_2678 PF01544 CorA-like Mg2+ transporter protein AK40_2679 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AK40_2679 PF00591 Glycosyl transferase family, a/b domain AK40_2679 PF02885 Glycosyl transferase family, helical bundle domain AK40_2680 PF01048 Phosphorylase superfamily AK40_2681 PF01676 Metalloenzyme superfamily AK40_2683 PF02899 Phage integrase, N-terminal SAM-like domain AK40_2683 PF00589 Phage integrase family AK40_2684 PF14004 Protein of unknown function (DUF4227) AK40_2685 PF01475 Ferric uptake regulator family AK40_2686 PF01944 Stage II sporulation protein M AK40_2688 PF00293 NUDIX domain AK40_2689 PF13072 Mother cell inhibitor of FtsZ AK40_2690 PF00248 Aldo/keto reductase family AK40_2691 PF00248 Aldo/keto reductase family AK40_2692 PF13673 Acetyltransferase (GNAT) domain AK40_2692 PF04229 GrpB protein AK40_2694 PF00565 Staphylococcal nuclease homologue AK40_2694 PF00149 Calcineurin-like phosphoesterase AK40_2694 PF00746 LPXTG cell wall anchor motif AK40_2694 PF02872 5'-nucleotidase, C-terminal domain AK40_2696 PF12146 Serine aminopeptidase, S33 AK40_2697 PF13726 Na+-H+ antiporter family AK40_2697 PF03553 Na+/H+ antiporter family AK40_2698 PF00356 Bacterial regulatory proteins, lacI family AK40_2699 PF00583 Acetyltransferase (GNAT) family AK40_27 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AK40_270 PF13456 Reverse transcriptase-like AK40_2700 PF12146 Serine aminopeptidase, S33 AK40_2701 PF10827 Protein of unknown function (DUF2552) AK40_2703 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK40_2703 PF01872 RibD C-terminal domain AK40_2704 PF00677 Lumazine binding domain AK40_2705 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AK40_2705 PF00925 GTP cyclohydrolase II AK40_2706 PF00885 6,7-dimethyl-8-ribityllumazine synthase AK40_2708 PF04055 Radical SAM superfamily AK40_2708 PF06968 Biotin and Thiamin Synthesis associated domain AK40_2709 PF13847 Methyltransferase domain AK40_271 PF01263 Aldose 1-epimerase AK40_2710 PF12697 Alpha/beta hydrolase family AK40_2710 PF08241 Methyltransferase domain AK40_2711 PF00155 Aminotransferase class I and II AK40_2713 PF00202 Aminotransferase class-III AK40_2716 PF00149 Calcineurin-like phosphoesterase AK40_2716 PF02872 5'-nucleotidase, C-terminal domain AK40_2718 PF13404 AsnC-type helix-turn-helix domain AK40_2718 PF01037 Lrp/AsnC ligand binding domain AK40_2721 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AK40_2721 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AK40_2722 PF00202 Aminotransferase class-III AK40_2723 PF00696 Amino acid kinase family AK40_2724 PF01960 ArgJ family AK40_2725 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK40_2725 PF02774 Semialdehyde dehydrogenase, dimerisation domain AK40_2727 PF00106 short chain dehydrogenase AK40_2728 PF00753 Metallo-beta-lactamase superfamily AK40_2729 PF03807 NADP oxidoreductase coenzyme F420-dependent AK40_2729 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK40_2730 PF03313 Serine dehydratase alpha chain AK40_2731 PF03315 Serine dehydratase beta chain AK40_2731 PF01842 ACT domain AK40_2732 PF12706 Beta-lactamase superfamily domain AK40_2732 PF00753 Metallo-beta-lactamase superfamily AK40_2734 PF00817 impB/mucB/samB family AK40_2734 PF11798 IMS family HHH motif AK40_2734 PF11799 impB/mucB/samB family C-terminal domain AK40_2736 PF07687 Peptidase dimerisation domain AK40_2736 PF01546 Peptidase family M20/M25/M40 AK40_2737 PF13302 Acetyltransferase (GNAT) domain AK40_2739 PF03734 L,D-transpeptidase catalytic domain AK40_2740 PF06081 Aromatic acid exporter family member 1 AK40_2740 PF11728 Putative aromatic acid exporter C-terminal domain AK40_2741 PF00005 ABC transporter AK40_2742 PF00528 Binding-protein-dependent transport system inner membrane component AK40_2743 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK40_2744 PF06491 Disulphide isomerase AK40_2745 PF11208 Protein of unknown function (DUF2992) AK40_2746 PF00293 NUDIX domain AK40_2746 PF09297 NADH pyrophosphatase zinc ribbon domain AK40_2747 PF01098 Cell cycle protein AK40_2748 PF02817 e3 binding domain AK40_2748 PF00364 Biotin-requiring enzyme AK40_2748 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK40_2749 PF02779 Transketolase, pyrimidine binding domain AK40_2749 PF02780 Transketolase, C-terminal domain AK40_2750 PF00676 Dehydrogenase E1 component AK40_2751 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_2751 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK40_2752 PF00871 Acetokinase family AK40_2753 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AK40_2753 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK40_2754 PF01515 Phosphate acetyl/butaryl transferase AK40_2755 PF00989 PAS fold AK40_2755 PF00158 Sigma-54 interaction domain AK40_2755 PF02954 Bacterial regulatory protein, Fis family AK40_2757 PF03009 Glycerophosphoryl diester phosphodiesterase family AK40_2758 PF14174 YycC-like protein AK40_276 PF00313 'Cold-shock' DNA-binding domain AK40_2760 PF00072 Response regulator receiver domain AK40_2760 PF08769 Sporulation initiation factor Spo0A C terminal AK40_2761 PF17820 PDZ domain AK40_2761 PF05580 SpoIVB peptidase S55 AK40_2762 PF13476 AAA domain AK40_2763 PF01316 Arginine repressor, DNA binding domain AK40_2763 PF02863 Arginine repressor, C-terminal domain AK40_2764 PF01479 S4 domain AK40_2764 PF01728 FtsJ-like methyltransferase AK40_2765 PF02780 Transketolase, C-terminal domain AK40_2765 PF02779 Transketolase, pyrimidine binding domain AK40_2765 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AK40_2766 PF00348 Polyprenyl synthetase AK40_2767 PF02609 Exonuclease VII small subunit AK40_2768 PF13742 OB-fold nucleic acid binding domain AK40_2768 PF02601 Exonuclease VII, large subunit AK40_2769 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AK40_2769 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AK40_277 PF08892 YqcI/YcgG family AK40_2770 PF01029 NusB family AK40_2771 PF03780 Asp23 family, cell envelope-related function AK40_2772 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AK40_2772 PF00289 Biotin carboxylase, N-terminal domain AK40_2772 PF02785 Biotin carboxylase C-terminal domain AK40_2773 PF00364 Biotin-requiring enzyme AK40_2775 PF12685 SpoIIIAH-like protein AK40_2777 PF09581 Stage III sporulation protein AF (Spore_III_AF) AK40_2778 PF09546 Stage III sporulation protein AE (spore_III_AE) AK40_2779 PF06686 Stage III sporulation protein AC/AD protein family AK40_278 PF01810 LysE type translocator AK40_2780 PF06686 Stage III sporulation protein AC/AD protein family AK40_2781 PF09548 Stage III sporulation protein AB (spore_III_AB) AK40_2786 PF09285 Elongation factor P, C-terminal AK40_2786 PF01132 Elongation factor P (EF-P) OB domain AK40_2786 PF08207 Elongation factor P (EF-P) KOW-like domain AK40_2787 PF01321 Creatinase/Prolidase N-terminal domain AK40_2787 PF00557 Metallopeptidase family M24 AK40_2788 PF01220 Dehydroquinase class II AK40_2789 PF11085 Conserved membrane protein YqhR AK40_2790 PF07136 Protein of unknown function (DUF1385) AK40_2791 PF13419 Haloacid dehalogenase-like hydrolase AK40_2793 PF01325 Iron dependent repressor, N-terminal DNA binding domain AK40_2793 PF02742 Iron dependent repressor, metal binding and dimerisation domain AK40_2795 PF03551 Transcriptional regulator PadR-like family AK40_2798 PF03099 Biotin/lipoate A/B protein ligase family AK40_2799 PF00581 Rhodanese-like domain AK40_2800 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK40_2800 PF00356 Bacterial regulatory proteins, lacI family AK40_2802 PF00893 Small Multidrug Resistance protein AK40_2803 PF00893 Small Multidrug Resistance protein AK40_281 PF04341 Protein of unknown function, DUF485 AK40_2810 PF00005 ABC transporter AK40_2811 PF00392 Bacterial regulatory proteins, gntR family AK40_2814 PF02347 Glycine cleavage system P-protein AK40_2815 PF02347 Glycine cleavage system P-protein AK40_2816 PF08669 Glycine cleavage T-protein C-terminal barrel domain AK40_2816 PF01571 Aminomethyltransferase folate-binding domain AK40_2817 PF00271 Helicase conserved C-terminal domain AK40_2817 PF00176 SNF2 family N-terminal domain AK40_2818 PF11079 Bacterial protein YqhG of unknown function AK40_282 PF00474 Sodium:solute symporter family AK40_2824 PF14038 YqzE-like protein AK40_2825 PF01202 Shikimate kinase AK40_283 PF00202 Aminotransferase class-III AK40_2830 PF07963 Prokaryotic N-terminal methylation motif AK40_2832 PF00482 Type II secretion system (T2SS), protein F AK40_2833 PF00437 Type II/IV secretion system protein AK40_2835 PF11117 Protein of unknown function (DUF2626) AK40_2836 PF00375 Sodium:dicarboxylate symporter family AK40_2842 PF04101 Glycosyltransferase family 28 C-terminal domain AK40_2842 PF03033 Glycosyltransferase family 28 N-terminal domain AK40_2843 PF02310 B12 binding domain AK40_2843 PF02607 B12 binding domain AK40_2843 PF02574 Homocysteine S-methyltransferase AK40_2843 PF00809 Pterin binding enzyme AK40_2843 PF02965 Vitamin B12 dependent methionine synthase, activation domain AK40_2844 PF02219 Methylenetetrahydrofolate reductase AK40_2844 PF02574 Homocysteine S-methyltransferase AK40_2845 PF01053 Cys/Met metabolism PLP-dependent enzyme AK40_2846 PF01053 Cys/Met metabolism PLP-dependent enzyme AK40_2847 PF01022 Bacterial regulatory protein, arsR family AK40_2849 PF00753 Metallo-beta-lactamase superfamily AK40_2850 PF10958 Protein of unknown function (DUF2759) AK40_2851 PF00480 ROK family AK40_2852 PF06014 Bacterial protein of unknown function (DUF910) AK40_2853 PF01812 5-formyltetrahydrofolate cyclo-ligase family AK40_2854 PF00471 Ribosomal protein L33 AK40_2855 PF00483 Nucleotidyl transferase AK40_2856 PF01895 PhoU domain AK40_2857 PF00005 ABC transporter AK40_2858 PF00528 Binding-protein-dependent transport system inner membrane component AK40_2859 PF00528 Binding-protein-dependent transport system inner membrane component AK40_2860 PF12849 PBP superfamily domain AK40_2862 PF07690 Major Facilitator Superfamily AK40_2863 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK40_2863 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK40_2867 PF04551 GcpE protein AK40_2868 PF01475 Ferric uptake regulator family AK40_2869 PF00950 ABC 3 transport family AK40_287 PF00589 Phage integrase family AK40_2870 PF00005 ABC transporter AK40_2871 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_2871 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_2872 PF11116 Protein of unknown function (DUF2624) AK40_2873 PF01261 Xylose isomerase-like TIM barrel AK40_2874 PF00270 DEAD/DEAH box helicase AK40_2874 PF00271 Helicase conserved C-terminal domain AK40_2876 PF02401 LytB protein AK40_2877 PF01784 NIF3 (NGG1p interacting factor 3) AK40_2878 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AK40_2879 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AK40_288 PF02899 Phage integrase, N-terminal SAM-like domain AK40_288 PF00589 Phage integrase family AK40_2880 PF03979 Sigma-70 factor, region 1.1 AK40_2880 PF04545 Sigma-70, region 4 AK40_2880 PF04542 Sigma-70 region 2 AK40_2880 PF00140 Sigma-70 factor, region 1.2 AK40_2880 PF04539 Sigma-70 region 3 AK40_2881 PF01807 CHC2 zinc finger AK40_2881 PF08275 DNA primase catalytic core, N-terminal domain AK40_2881 PF10410 DnaB-helicase binding domain of primase AK40_2882 PF03618 Kinase/pyrophosphorylase AK40_2883 PF00571 CBS domain AK40_2883 PF08279 HTH domain AK40_2884 PF11967 Recombination protein O N terminal AK40_2884 PF02565 Recombination protein O C terminal AK40_2886 PF07650 KH domain AK40_2886 PF01926 50S ribosome-binding GTPase AK40_2887 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK40_2888 PF01219 Prokaryotic diacylglycerol kinase AK40_2889 PF02130 Uncharacterized protein family UPF0054 AK40_289 PF00999 Sodium/hydrogen exchanger family AK40_2890 PF01966 HD domain AK40_2890 PF07697 7TM-HD extracellular AK40_2890 PF07698 7TM receptor with intracellular HD hydrolase AK40_2891 PF02562 PhoH-like protein AK40_2892 PF06898 Putative stage IV sporulation protein YqfD AK40_2893 PF07873 YabP family AK40_2894 PF09424 Yqey-like protein AK40_2895 PF01165 Ribosomal protein S21 AK40_2896 PF01938 TRAM domain AK40_2896 PF00919 Uncharacterized protein family UPF0004 AK40_2896 PF04055 Radical SAM superfamily AK40_2897 PF04452 RNA methyltransferase AK40_2899 PF01556 DnaJ C terminal domain AK40_2899 PF00226 DnaJ domain AK40_2899 PF00684 DnaJ central domain AK40_290 PF17770 Ribonuclease J C-terminal domain AK40_290 PF00753 Metallo-beta-lactamase superfamily AK40_290 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AK40_2900 PF00012 Hsp70 protein AK40_2901 PF01025 GrpE AK40_2902 PF01628 HrcA protein C terminal domain AK40_2903 PF04055 Radical SAM superfamily AK40_2903 PF06969 HemN C-terminal domain AK40_2904 PF01638 HxlR-like helix-turn-helix AK40_2905 PF03144 Elongation factor Tu domain 2 AK40_2905 PF06421 GTP-binding protein LepA C-terminus AK40_2905 PF00679 Elongation factor G C-terminus AK40_2905 PF00009 Elongation factor Tu GTP binding domain AK40_2907 PF03418 Germination protease AK40_2908 PF01649 Ribosomal protein S20 AK40_2909 PF06144 DNA polymerase III, delta subunit AK40_291 PF13411 MerR HTH family regulatory protein AK40_291 PF06445 GyrI-like small molecule binding domain AK40_2910 PF14141 YqzM-like protein AK40_2911 PF03772 Competence protein AK40_2911 PF00753 Metallo-beta-lactamase superfamily AK40_2911 PF13567 Domain of unknown function (DUF4131) AK40_2912 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK40_2913 PF10531 SLBB domain AK40_2914 PF03807 NADP oxidoreductase coenzyme F420-dependent AK40_2914 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK40_2915 PF13649 Methyltransferase domain AK40_2917 PF01966 HD domain AK40_2918 PF01467 Cytidylyltransferase-like AK40_2919 PF01985 CRS1 / YhbY (CRM) domain AK40_2920 PF08501 Shikimate dehydrogenase substrate binding domain AK40_2920 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AK40_2920 PF01488 Shikimate / quinate 5-dehydrogenase AK40_2921 PF01926 50S ribosome-binding GTPase AK40_2924 PF02666 Phosphatidylserine decarboxylase AK40_2925 PF04542 Sigma-70 region 2 AK40_2925 PF04545 Sigma-70, region 4 AK40_2927 PF16244 Domain of unknown function (DUF4901) AK40_2928 PF00471 Ribosomal protein L33 AK40_2929 PF00881 Nitroreductase family AK40_293 PF04239 Protein of unknown function (DUF421) AK40_2930 PF04607 Region found in RelA / SpoT proteins AK40_2932 PF00245 Alkaline phosphatase AK40_2934 PF08386 TAP-like protein AK40_2934 PF00561 alpha/beta hydrolase fold AK40_294 PF02698 DUF218 domain AK40_2940 PF13860 FlgD Ig-like domain AK40_2940 PF02225 PA domain AK40_2940 PF05922 Peptidase inhibitor I9 AK40_2940 PF00082 Subtilase family AK40_2941 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AK40_2943 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_2944 PF07681 DoxX AK40_2950 PF00005 ABC transporter AK40_2951 PF01032 FecCD transport family AK40_2952 PF01497 Periplasmic binding protein AK40_2953 PF14143 YrhC-like protein AK40_2954 PF00465 Iron-containing alcohol dehydrogenase AK40_2954 PF00171 Aldehyde dehydrogenase family AK40_2955 PF01053 Cys/Met metabolism PLP-dependent enzyme AK40_2956 PF00291 Pyridoxal-phosphate dependent enzyme AK40_2957 PF01048 Phosphorylase superfamily AK40_2958 PF08241 Methyltransferase domain AK40_296 PF00881 Nitroreductase family AK40_2961 PF03717 Penicillin-binding Protein dimerisation domain AK40_2961 PF00905 Penicillin binding protein transpeptidase domain AK40_2962 PF03449 Transcription elongation factor, N-terminal AK40_2962 PF01272 Transcription elongation factor, GreA/GreB, C-term AK40_2963 PF00485 Phosphoribulokinase / Uridine kinase family AK40_2967 PF02618 YceG-like family AK40_2968 PF06949 Protein of unknown function (DUF1292) AK40_2969 PF03652 Holliday junction resolvase AK40_2970 PF06135 IreB regulatory phosphoprotein AK40_2971 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK40_2971 PF01411 tRNA synthetases class II (A) AK40_2971 PF02272 DHHA1 domain AK40_2973 PF01594 AI-2E family transporter AK40_2977 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AK40_2977 PF13538 UvrD-like helicase C-terminal domain AK40_2977 PF14490 Helix-hairpin-helix containing domain AK40_2980 PF00266 Aminotransferase class-V AK40_2981 PF02082 Transcriptional regulator AK40_2982 PF05496 Holliday junction DNA helicase RuvB P-loop domain AK40_2982 PF16193 AAA C-terminal domain AK40_2982 PF12002 MgsA AAA+ ATPase C terminal AK40_2984 PF00899 ThiF family AK40_2985 PF02938 GAD domain AK40_2985 PF00152 tRNA synthetases class II (D, K and N) AK40_2985 PF01336 OB-fold nucleic acid binding domain AK40_2986 PF03129 Anticodon binding domain AK40_2986 PF13393 Histidyl-tRNA synthetase AK40_2988 PF02580 D-Tyr-tRNA(Tyr) deacylase AK40_2989 PF13291 ACT domain AK40_2989 PF04607 Region found in RelA / SpoT proteins AK40_2989 PF02824 TGS domain AK40_2990 PF00156 Phosphoribosyl transferase domain AK40_2991 PF17768 RecJ OB domain AK40_2991 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AK40_2991 PF01368 DHH family AK40_2991 PF02272 DHHA1 domain AK40_2992 PF01545 Cation efflux family AK40_2992 PF16916 Dimerisation domain of Zinc Transporter AK40_2993 PF02355 Protein export membrane protein AK40_2993 PF07549 SecD/SecF GG Motif AK40_2994 PF13797 Post-transcriptional regulator AK40_2995 PF01943 Polysaccharide biosynthesis protein AK40_2995 PF14667 Polysaccharide biosynthesis C-terminal domain AK40_2996 PF04239 Protein of unknown function (DUF421) AK40_2998 PF02699 Preprotein translocase subunit AK40_2999 PF01702 Queuine tRNA-ribosyltransferase AK40_3000 PF02547 Queuosine biosynthesis protein AK40_3001 PF11146 Protein of unknown function (DUF2905) AK40_3002 PF05491 RuvB C-terminal winged helix domain AK40_3002 PF05496 Holliday junction DNA helicase RuvB P-loop domain AK40_3002 PF17864 RuvB AAA lid domain AK40_3003 PF01330 RuvA N terminal domain AK40_3003 PF07499 RuvA, C-terminal domain AK40_3004 PF01497 Periplasmic binding protein AK40_3006 PF00892 EamA-like transporter family AK40_3007 PF01022 Bacterial regulatory protein, arsR family AK40_3010 PF01476 LysM domain AK40_3011 PF02445 Quinolinate synthetase A protein AK40_3012 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AK40_3012 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AK40_3013 PF00890 FAD binding domain AK40_3013 PF02910 Fumarate reductase flavoprotein C-term AK40_3014 PF00266 Aminotransferase class-V AK40_3015 PF02829 3H domain AK40_3015 PF08279 HTH domain AK40_3016 PF03473 MOSC domain AK40_3016 PF03475 3-alpha domain AK40_3017 PF01842 ACT domain AK40_3017 PF00800 Prephenate dehydratase AK40_3018 PF02687 FtsX-like permease family AK40_3019 PF02687 FtsX-like permease family AK40_3020 PF00005 ABC transporter AK40_3021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3022 PF00486 Transcriptional regulatory protein, C terminal AK40_3022 PF00072 Response regulator receiver domain AK40_3023 PF01926 50S ribosome-binding GTPase AK40_3023 PF01018 GTP1/OBG AK40_3023 PF09269 Domain of unknown function (DUF1967) AK40_3024 PF14682 Sporulation initiation phospho-transferase B, C-terminal AK40_3024 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK40_3025 PF01016 Ribosomal L27 protein AK40_3026 PF04327 Cysteine protease Prp AK40_3027 PF00829 Ribosomal prokaryotic L21 protein AK40_3028 PF00575 S1 RNA binding domain AK40_3028 PF10150 Ribonuclease E/G family AK40_3029 PF02163 Peptidase family M50 AK40_3030 PF01551 Peptidase family M23 AK40_3031 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AK40_3032 PF03775 Septum formation inhibitor MinC, C-terminal domain AK40_3034 PF04085 rod shape-determining protein MreC AK40_3043 PF03412 Peptidase C39 family AK40_3043 PF00005 ABC transporter AK40_3043 PF00664 ABC transporter transmembrane region AK40_305 PF17209 Hfq protein AK40_3052 PF00144 Beta-lactamase AK40_3055 PF01381 Helix-turn-helix AK40_3059 PF02899 Phage integrase, N-terminal SAM-like domain AK40_3059 PF00589 Phage integrase family AK40_3060 PF04002 RadC-like JAB domain AK40_3061 PF02545 Maf-like protein AK40_3063 PF08245 Mur ligase middle domain AK40_3063 PF02875 Mur ligase family, glutamate ligase domain AK40_3064 PF08264 Anticodon-binding domain of tRNA AK40_3064 PF10458 Valyl tRNA synthetase tRNA binding arm AK40_3064 PF00133 tRNA synthetases class I (I, L, M and V) AK40_3066 PF01476 LysM domain AK40_3067 PF00202 Aminotransferase class-III AK40_3068 PF00490 Delta-aminolevulinic acid dehydratase AK40_3069 PF02602 Uroporphyrinogen-III synthase HemD AK40_307 PF01618 MotA/TolQ/ExbB proton channel family AK40_3070 PF03900 Porphobilinogen deaminase, C-terminal domain AK40_3070 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AK40_3071 PF01578 Cytochrome C assembly protein AK40_3072 PF01488 Shikimate / quinate 5-dehydrogenase AK40_3072 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AK40_3072 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AK40_3073 PF01047 MarR family AK40_3074 PF02566 OsmC-like protein AK40_3075 PF01926 50S ribosome-binding GTPase AK40_3076 PF02190 ATP-dependent protease La (LON) substrate-binding domain AK40_3076 PF05362 Lon protease (S16) C-terminal proteolytic domain AK40_3076 PF00004 ATPase family associated with various cellular activities (AAA) AK40_3077 PF00004 ATPase family associated with various cellular activities (AAA) AK40_3077 PF05362 Lon protease (S16) C-terminal proteolytic domain AK40_3078 PF10431 C-terminal, D2-small domain, of ClpB protein AK40_3078 PF07724 AAA domain (Cdc48 subfamily) AK40_3078 PF06689 ClpX C4-type zinc finger AK40_3079 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AK40_3079 PF05698 Bacterial trigger factor protein (TF) C-terminus AK40_3079 PF05697 Bacterial trigger factor protein (TF) AK40_308 PF13677 Membrane MotB of proton-channel complex MotA/MotB AK40_308 PF00691 OmpA family AK40_3084 PF08000 Bacterial PH domain AK40_3084 PF11724 YvbH-like oligomerisation region AK40_3087 PF12850 Calcineurin-like phosphoesterase superfamily domain AK40_3088 PF01725 Ham1 family AK40_3089 PF03725 3' exoribonuclease family, domain 2 AK40_3089 PF01138 3' exoribonuclease family, domain 1 AK40_309 PF00072 Response regulator receiver domain AK40_3090 PF10646 Sporulation and spore germination AK40_3091 PF01177 Asp/Glu/Hydantoin racemase AK40_3092 PF07690 Major Facilitator Superfamily AK40_3094 PF00440 Bacterial regulatory proteins, tetR family AK40_3095 PF01965 DJ-1/PfpI family AK40_3097 PF00196 Bacterial regulatory proteins, luxR family AK40_3098 PF00860 Permease family AK40_3099 PF07969 Amidohydrolase family AK40_310 PF01627 Hpt domain AK40_310 PF02895 Signal transducing histidine kinase, homodimeric domain AK40_310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_310 PF01584 CheW-like domain AK40_310 PF07194 P2 response regulator binding domain AK40_3101 PF01381 Helix-turn-helix AK40_3101 PF07883 Cupin domain AK40_3102 PF13536 Putative multidrug resistance efflux transporter AK40_3103 PF00230 Major intrinsic protein AK40_3104 PF02082 Transcriptional regulator AK40_3106 PF13732 Domain of unknown function (DUF4162) AK40_3106 PF00005 ABC transporter AK40_3107 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AK40_3108 PF13677 Membrane MotB of proton-channel complex MotA/MotB AK40_3108 PF00691 OmpA family AK40_3109 PF01618 MotA/TolQ/ExbB proton channel family AK40_311 PF04509 CheC-like family AK40_311 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK40_3110 PF02557 D-alanyl-D-alanine carboxypeptidase AK40_3111 PF03061 Thioesterase superfamily AK40_3112 PF13085 2Fe-2S iron-sulfur cluster binding domain AK40_3112 PF13183 4Fe-4S dicluster domain AK40_3113 PF00890 FAD binding domain AK40_3113 PF02910 Fumarate reductase flavoprotein C-term AK40_3114 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AK40_3115 PF10702 Protein of unknown function (DUF2507) AK40_3116 PF01541 GIY-YIG catalytic domain AK40_3116 PF02151 UvrB/uvrC motif AK40_3116 PF08459 UvrC Helix-hairpin-helix N-terminal AK40_3117 PF00085 Thioredoxin AK40_3118 PF00766 Electron transfer flavoprotein FAD-binding domain AK40_3118 PF01012 Electron transfer flavoprotein domain AK40_3119 PF01012 Electron transfer flavoprotein domain AK40_3120 PF00378 Enoyl-CoA hydratase/isomerase AK40_3121 PF00440 Bacterial regulatory proteins, tetR family AK40_3121 PF08359 YsiA-like protein, C-terminal region AK40_3122 PF13193 AMP-binding enzyme C-terminal domain AK40_3122 PF00501 AMP-binding enzyme AK40_3124 PF01497 Periplasmic binding protein AK40_3125 PF01032 FecCD transport family AK40_3126 PF05163 DinB family AK40_3131 PF00005 ABC transporter AK40_3132 PF00512 His Kinase A (phospho-acceptor) domain AK40_3132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3133 PF00072 Response regulator receiver domain AK40_3133 PF00486 Transcriptional regulatory protein, C terminal AK40_3135 PF09962 Uncharacterized conserved protein (DUF2196) AK40_3136 PF10672 S-adenosylmethionine-dependent methyltransferase AK40_3136 PF17785 PUA-like domain AK40_3138 PF03992 Antibiotic biosynthesis monooxygenase AK40_3139 PF04203 Sortase domain AK40_314 PF01739 CheR methyltransferase, SAM binding domain AK40_314 PF03705 CheR methyltransferase, all-alpha domain AK40_3140 PF00005 ABC transporter AK40_3141 PF01032 FecCD transport family AK40_3142 PF01497 Periplasmic binding protein AK40_3143 PF05031 Iron Transport-associated domain AK40_3144 PF05031 Iron Transport-associated domain AK40_3145 PF05525 Branched-chain amino acid transport protein AK40_3146 PF01479 S4 domain AK40_3146 PF00849 RNA pseudouridylate synthase AK40_3148 PF01713 Smr domain AK40_3148 PF00488 MutS domain V AK40_3149 PF14791 DNA polymerase beta thumb AK40_3149 PF14716 Helix-hairpin-helix domain AK40_3149 PF02811 PHP domain AK40_3150 PF02674 Colicin V production protein AK40_3151 PF05164 Cell division protein ZapA AK40_3152 PF11858 Domain of unknown function (DUF3378) AK40_3152 PF01351 Ribonuclease HII AK40_3156 PF00152 tRNA synthetases class II (D, K and N) AK40_3156 PF01336 OB-fold nucleic acid binding domain AK40_3157 PF03147 Ferredoxin-fold anticodon binding domain AK40_3157 PF03484 tRNA synthetase B5 domain AK40_3157 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AK40_3157 PF03483 B3/4 domain AK40_3157 PF01588 Putative tRNA binding domain AK40_3158 PF01409 tRNA synthetases class II core domain (F) AK40_3158 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AK40_3159 PF08032 RNA 2'-O ribose methyltransferase substrate binding AK40_3159 PF00588 SpoU rRNA Methylase family AK40_3160 PF14098 Small, acid-soluble spore protein I AK40_3161 PF01966 HD domain AK40_3168 PF07690 Major Facilitator Superfamily AK40_3170 PF00440 Bacterial regulatory proteins, tetR family AK40_3170 PF16859 Tetracyclin repressor-like, C-terminal domain AK40_3171 PF05343 M42 glutamyl aminopeptidase AK40_3173 PF00453 Ribosomal protein L20 AK40_3174 PF01632 Ribosomal protein L35 AK40_3175 PF00707 Translation initiation factor IF-3, C-terminal domain AK40_3175 PF05198 Translation initiation factor IF-3, N-terminal domain AK40_3176 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK40_3176 PF02824 TGS domain AK40_3176 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK40_3176 PF03129 Anticodon binding domain AK40_3177 PF08812 YtxC-like family AK40_3178 PF07319 Primosomal protein DnaI N-terminus AK40_3178 PF01695 IstB-like ATP binding protein AK40_3179 PF07261 Replication initiation and membrane attachment AK40_318 PF00460 Flagella basal body rod protein AK40_318 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK40_3180 PF03477 ATP cone domain AK40_3181 PF02675 S-adenosylmethionine decarboxylase AK40_3182 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AK40_3182 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK40_3183 PF01121 Dephospho-CoA kinase AK40_3184 PF02659 Putative manganese efflux pump AK40_3185 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AK40_3185 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AK40_3185 PF06827 Zinc finger found in FPG and IleRS AK40_3186 PF00476 DNA polymerase family A AK40_3186 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AK40_3186 PF01367 5'-3' exonuclease, C-terminal SAM fold AK40_3187 PF00512 His Kinase A (phospho-acceptor) domain AK40_3187 PF00989 PAS fold AK40_3187 PF16736 Single Cache-like AK40_3187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3188 PF00072 Response regulator receiver domain AK40_3188 PF00486 Transcriptional regulatory protein, C terminal AK40_319 PF00669 Bacterial flagellin N-terminal helical region AK40_319 PF00700 Bacterial flagellin C-terminal helical region AK40_3192 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK40_3192 PF00056 lactate/malate dehydrogenase, NAD binding domain AK40_3193 PF00180 Isocitrate/isopropylmalate dehydrogenase AK40_3194 PF00285 Citrate synthase, C-terminal domain AK40_3195 PF04284 Protein of unknown function (DUF441) AK40_3196 PF01594 AI-2E family transporter AK40_3197 PF04186 FxsA cytoplasmic membrane protein AK40_3198 PF00224 Pyruvate kinase, barrel domain AK40_3198 PF02887 Pyruvate kinase, alpha/beta domain AK40_3198 PF00391 PEP-utilising enzyme, mobile domain AK40_3199 PF00365 Phosphofructokinase AK40_320 PF02465 Flagellar hook-associated protein 2 N-terminus AK40_320 PF07195 Flagellar hook-associated protein 2 C-terminus AK40_320 PF07196 Flagellin hook IN motif AK40_3200 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AK40_3201 PF01039 Carboxyl transferase domain AK40_3201 PF17848 Acetyl-coA carboxylase zinc finger domain AK40_3202 PF00392 Bacterial regulatory proteins, gntR family AK40_3203 PF03949 Malic enzyme, NAD binding domain AK40_3203 PF00390 Malic enzyme, N-terminal domain AK40_3204 PF14579 Helix-hairpin-helix motif AK40_3204 PF07733 Bacterial DNA polymerase III alpha NTPase domain AK40_3204 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AK40_3204 PF02811 PHP domain AK40_3204 PF01336 OB-fold nucleic acid binding domain AK40_3205 PF14034 Sporulation protein YtrH AK40_3207 PF01368 DHH family AK40_3207 PF02272 DHHA1 domain AK40_3208 PF14007 YtpI-like protein AK40_3211 PF03061 Thioesterase superfamily AK40_3211 PF00392 Bacterial regulatory proteins, gntR family AK40_3211 PF00571 CBS domain AK40_3211 PF07085 DRTGG domain AK40_3214 PF00557 Metallopeptidase family M24 AK40_3214 PF01321 Creatinase/Prolidase N-terminal domain AK40_3220 PF08281 Sigma-70, region 4 AK40_3220 PF04542 Sigma-70 region 2 AK40_3223 PF07883 Cupin domain AK40_3225 PF01381 Helix-turn-helix AK40_3227 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AK40_3227 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AK40_3229 PF00582 Universal stress protein family AK40_323 PF00460 Flagella basal body rod protein AK40_3231 PF02899 Phage integrase, N-terminal SAM-like domain AK40_3231 PF00589 Phage integrase family AK40_3237 PF14698 Argininosuccinate lyase C-terminal AK40_3237 PF00206 Lyase AK40_3238 PF00764 Arginosuccinate synthase AK40_324 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK40_324 PF00460 Flagella basal body rod protein AK40_3242 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_3242 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_3243 PF12787 EcsC protein family AK40_3245 PF00871 Acetokinase family AK40_3246 PF02384 N-6 DNA Methylase AK40_3247 PF08534 Redoxin AK40_3248 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AK40_325 PF02049 Flagellar hook-basal body complex protein FliE AK40_3250 PF01513 ATP-NAD kinase AK40_3251 PF07969 Amidohydrolase family AK40_3253 PF13193 AMP-binding enzyme C-terminal domain AK40_3253 PF00501 AMP-binding enzyme AK40_3254 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK40_3255 PF02568 Thiamine biosynthesis protein (ThiI) AK40_3255 PF02926 THUMP domain AK40_3256 PF00266 Aminotransferase class-V AK40_3257 PF06160 Septation ring formation regulator, EzrA AK40_3258 PF03466 LysR substrate binding domain AK40_3258 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_3259 PF00892 EamA-like transporter family AK40_326 PF01514 Secretory protein of YscJ/FliF family AK40_326 PF08345 Flagellar M-ring protein C-terminal AK40_3260 PF00440 Bacterial regulatory proteins, tetR family AK40_3261 PF13185 GAF domain AK40_3262 PF01053 Cys/Met metabolism PLP-dependent enzyme AK40_3263 PF01479 S4 domain AK40_3263 PF00163 Ribosomal protein S4/S9 N-terminal domain AK40_327 PF01706 FliG C-terminal domain AK40_327 PF14841 FliG middle domain AK40_327 PF14842 FliG N-terminal domain AK40_3270 PF00579 tRNA synthetases class I (W and Y) AK40_3270 PF01479 S4 domain AK40_3272 PF08281 Sigma-70, region 4 AK40_3272 PF04542 Sigma-70 region 2 AK40_3275 PF00501 AMP-binding enzyme AK40_3275 PF13193 AMP-binding enzyme C-terminal domain AK40_3276 PF00583 Acetyltransferase (GNAT) family AK40_3277 PF00571 CBS domain AK40_3278 PF00850 Histone deacetylase domain AK40_3281 PF00072 Response regulator receiver domain AK40_3281 PF00486 Transcriptional regulatory protein, C terminal AK40_3282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3282 PF00512 His Kinase A (phospho-acceptor) domain AK40_3282 PF13426 PAS domain AK40_3282 PF00672 HAMP domain AK40_3283 PF12796 Ankyrin repeats (3 copies) AK40_3284 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AK40_3285 PF01741 Large-conductance mechanosensitive channel, MscL AK40_329 PF18269 T3SS EscN ATPase C-terminal domain AK40_329 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK40_329 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK40_3290 PF00356 Bacterial regulatory proteins, lacI family AK40_3291 PF07537 CamS sex pheromone cAM373 precursor AK40_3292 PF11009 Protein of unknown function (DUF2847) AK40_3294 PF02073 Thermophilic metalloprotease (M29) AK40_3298 PF02687 FtsX-like permease family AK40_3299 PF00005 ABC transporter AK40_33 PF07972 NrdI Flavodoxin like AK40_3302 PF13302 Acetyltransferase (GNAT) domain AK40_3303 PF03551 Transcriptional regulator PadR-like family AK40_3305 PF02875 Mur ligase family, glutamate ligase domain AK40_3305 PF08245 Mur ligase middle domain AK40_3305 PF01225 Mur ligase family, catalytic domain AK40_3307 PF17854 FtsK alpha domain AK40_3307 PF09397 Ftsk gamma domain AK40_3307 PF01580 FtsK/SpoIIIE family AK40_3309 PF14794 Domain of unknown function (DUF4479) AK40_3309 PF01588 Putative tRNA binding domain AK40_3310 PF07285 Protein of unknown function (DUF1444) AK40_3311 PF00085 Thioredoxin AK40_3312 PF01931 Protein of unknown function DUF84 AK40_3313 PF05343 M42 glutamyl aminopeptidase AK40_3315 PF00753 Metallo-beta-lactamase superfamily AK40_3316 PF02390 Putative methyltransferase AK40_3317 PF14165 YtzH-like protein AK40_3318 PF01636 Phosphotransferase enzyme family AK40_3319 PF00128 Alpha amylase, catalytic domain AK40_3319 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AK40_3319 PF17999 Pullulanase N1-terminal domain AK40_3320 PF02834 LigT like Phosphoesterase AK40_3321 PF01546 Peptidase family M20/M25/M40 AK40_3322 PF08220 DeoR-like helix-turn-helix domain AK40_3323 PF01479 S4 domain AK40_3323 PF00849 RNA pseudouridylate synthase AK40_3324 PF14667 Polysaccharide biosynthesis C-terminal domain AK40_3324 PF01943 Polysaccharide biosynthesis protein AK40_3326 PF07690 Major Facilitator Superfamily AK40_3327 PF01022 Bacterial regulatory protein, arsR family AK40_3328 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AK40_333 PF00460 Flagella basal body rod protein AK40_333 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK40_333 PF07559 Flagellar basal body protein FlaE AK40_3330 PF10957 Sporulation protein Cse60 AK40_3332 PF02559 CarD-like/TRCF domain AK40_3334 PF06800 Sugar transport protein AK40_3337 PF02391 MoaE protein AK40_3338 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AK40_3339 PF03453 MoeA N-terminal region (domain I and II) AK40_3339 PF03454 MoeA C-terminal region (domain IV) AK40_3339 PF00994 Probable molybdopterin binding domain AK40_3340 PF01967 MoaC family AK40_3341 PF00899 ThiF family AK40_3342 PF06463 Molybdenum Cofactor Synthesis C AK40_3342 PF04055 Radical SAM superfamily AK40_3346 PF00581 Rhodanese-like domain AK40_3348 PF00561 alpha/beta hydrolase fold AK40_3349 PF03323 Bacillus/Clostridium GerA spore germination protein AK40_3350 PF03845 Spore germination protein AK40_3355 PF08264 Anticodon-binding domain of tRNA AK40_3355 PF09334 tRNA synthetases class I (M) AK40_3355 PF00133 tRNA synthetases class I (I, L, M and V) AK40_3355 PF13603 Leucyl-tRNA synthetase, Domain 2 AK40_3356 PF07690 Major Facilitator Superfamily AK40_3357 PF00999 Sodium/hydrogen exchanger family AK40_3358 PF02080 TrkA-C domain AK40_3359 PF00589 Phage integrase family AK40_336 PF01584 CheW-like domain AK40_336 PF00072 Response regulator receiver domain AK40_3362 PF00005 ABC transporter AK40_3363 PF07786 Protein of unknown function (DUF1624) AK40_3363 PF04235 Protein of unknown function (DUF418) AK40_3366 PF16199 Radical_SAM C-terminal domain AK40_3366 PF04055 Radical SAM superfamily AK40_3367 PF06962 Putative rRNA methylase AK40_3368 PF00005 ABC transporter AK40_337 PF12181 DNA binding domain of the motility gene repressor (MogR) AK40_3370 PF01177 Asp/Glu/Hydantoin racemase AK40_3372 PF10026 Predicted Zn-dependent protease (DUF2268) AK40_3376 PF10776 Protein of unknown function (DUF2600) AK40_3377 PF12146 Serine aminopeptidase, S33 AK40_3378 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_3379 PF01569 PAP2 superfamily AK40_338 PF00669 Bacterial flagellin N-terminal helical region AK40_338 PF00700 Bacterial flagellin C-terminal helical region AK40_3380 PF00534 Glycosyl transferases group 1 AK40_3380 PF13439 Glycosyltransferase Family 4 AK40_3381 PF12804 MobA-like NTP transferase domain AK40_3382 PF00994 Probable molybdopterin binding domain AK40_3386 PF02772 S-adenosylmethionine synthetase, central domain AK40_3386 PF00438 S-adenosylmethionine synthetase, N-terminal domain AK40_3386 PF02773 S-adenosylmethionine synthetase, C-terminal domain AK40_3387 PF01293 Phosphoenolpyruvate carboxykinase AK40_339 PF08884 Flagellin D3 domain AK40_339 PF00669 Bacterial flagellin N-terminal helical region AK40_339 PF00700 Bacterial flagellin C-terminal helical region AK40_3394 PF13419 Haloacid dehalogenase-like hydrolase AK40_3395 PF08220 DeoR-like helix-turn-helix domain AK40_3395 PF00455 DeoR C terminal sensor domain AK40_3396 PF13419 Haloacid dehalogenase-like hydrolase AK40_3397 PF00989 PAS fold AK40_3397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3397 PF00512 His Kinase A (phospho-acceptor) domain AK40_3397 PF13188 PAS domain AK40_3397 PF13426 PAS domain AK40_3398 PF08447 PAS fold AK40_3398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3398 PF00512 His Kinase A (phospho-acceptor) domain AK40_3398 PF00989 PAS fold AK40_3399 PF08386 TAP-like protein AK40_3399 PF00561 alpha/beta hydrolase fold AK40_34 PF00317 Ribonucleotide reductase, all-alpha domain AK40_34 PF08343 Ribonucleotide reductase N-terminal AK40_34 PF02867 Ribonucleotide reductase, barrel domain AK40_340 PF01464 Transglycosylase SLT domain AK40_3400 PF00884 Sulfatase AK40_3404 PF00005 ABC transporter AK40_3405 PF00528 Binding-protein-dependent transport system inner membrane component AK40_3408 PF13419 Haloacid dehalogenase-like hydrolase AK40_3410 PF00293 NUDIX domain AK40_3414 PF02664 S-Ribosylhomocysteinase (LuxS) AK40_3415 PF00484 Carbonic anhydrase AK40_3416 PF01809 Putative membrane protein insertion efficiency factor AK40_3417 PF01654 Cytochrome bd terminal oxidase subunit I AK40_3418 PF02322 Cytochrome bd terminal oxidase subunit II AK40_3419 PF10676 Spore germination protein gerPA/gerPF AK40_342 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK40_342 PF02154 Flagellar motor switch protein FliM AK40_3422 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_3422 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_3427 PF04012 PspA/IM30 family AK40_343 PF04509 CheC-like family AK40_343 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AK40_3439 PF07670 Nucleoside recognition AK40_3439 PF17910 FeoB cytosolic helical domain AK40_3439 PF02421 Ferrous iron transport protein B AK40_3439 PF07664 Ferrous iron transport protein B C terminus AK40_3441 PF09515 Thiamine transporter protein (Thia_YuaJ) AK40_3442 PF00672 HAMP domain AK40_3442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3442 PF00512 His Kinase A (phospho-acceptor) domain AK40_3443 PF00072 Response regulator receiver domain AK40_3443 PF00486 Transcriptional regulatory protein, C terminal AK40_3449 PF00781 Diacylglycerol kinase catalytic domain AK40_345 PF00813 FliP family AK40_3450 PF01385 Probable transposase AK40_3450 PF12323 Helix-turn-helix domain AK40_3450 PF07282 Putative transposase DNA-binding domain AK40_3454 PF09335 SNARE associated Golgi protein AK40_3455 PF00398 Ribosomal RNA adenine dimethylase AK40_3456 PF02687 FtsX-like permease family AK40_3457 PF00005 ABC transporter AK40_3458 PF12833 Helix-turn-helix domain AK40_3458 PF06445 GyrI-like small molecule binding domain AK40_3459 PF00072 Response regulator receiver domain AK40_3459 PF00486 Transcriptional regulatory protein, C terminal AK40_346 PF01313 Bacterial export proteins, family 3 AK40_3460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3461 PF02687 FtsX-like permease family AK40_3462 PF02687 FtsX-like permease family AK40_3463 PF00005 ABC transporter AK40_3464 PF02687 FtsX-like permease family AK40_3466 PF02447 GntP family permease AK40_3469 PF07071 KDGP aldolase AK40_3470 PF03841 L-seryl-tRNA selenium transferase AK40_3471 PF01979 Amidohydrolase family AK40_3472 PF02557 D-alanyl-D-alanine carboxypeptidase AK40_3473 PF00512 His Kinase A (phospho-acceptor) domain AK40_3473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3474 PF00072 Response regulator receiver domain AK40_3474 PF00486 Transcriptional regulatory protein, C terminal AK40_3475 PF13378 Enolase C-terminal domain-like AK40_3475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK40_3476 PF00501 AMP-binding enzyme AK40_3476 PF13193 AMP-binding enzyme C-terminal domain AK40_3477 PF00378 Enoyl-CoA hydratase/isomerase AK40_3478 PF00561 alpha/beta hydrolase fold AK40_3479 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_3479 PF16582 Middle domain of thiamine pyrophosphate AK40_3479 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_348 PF01312 FlhB HrpN YscU SpaS Family AK40_3480 PF00425 chorismate binding enzyme AK40_3481 PF01040 UbiA prenyltransferase family AK40_3482 PF01258 Prokaryotic dksA/traR C4-type zinc finger AK40_3483 PF00313 'Cold-shock' DNA-binding domain AK40_3487 PF00343 Carbohydrate phosphorylase AK40_3488 PF08323 Starch synthase catalytic domain AK40_3488 PF00534 Glycosyl transferases group 1 AK40_3489 PF00483 Nucleotidyl transferase AK40_349 PF00771 FHIPEP family AK40_3490 PF00483 Nucleotidyl transferase AK40_3491 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AK40_3491 PF02806 Alpha amylase, C-terminal all-beta domain AK40_3491 PF00128 Alpha amylase, catalytic domain AK40_3493 PF13860 FlgD Ig-like domain AK40_3493 PF05922 Peptidase inhibitor I9 AK40_3493 PF02225 PA domain AK40_3493 PF00082 Subtilase family AK40_3494 PF00056 lactate/malate dehydrogenase, NAD binding domain AK40_3494 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK40_35 PF01844 HNH endonuclease AK40_350 PF00448 SRP54-type protein, GTPase domain AK40_351 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AK40_351 PF00460 Flagella basal body rod protein AK40_3513 PF05697 Bacterial trigger factor protein (TF) AK40_3513 PF05698 Bacterial trigger factor protein (TF) C-terminus AK40_352 PF02272 DHHA1 domain AK40_352 PF01411 tRNA synthetases class II (A) AK40_352 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK40_3534 PF02308 MgtC family AK40_3535 PF08868 YugN-like family AK40_3536 PF07885 Ion channel AK40_3536 PF02254 TrkA-N domain AK40_3537 PF00342 Phosphoglucose isomerase AK40_3538 PF04070 Domain of unknown function (DUF378) AK40_3539 PF00575 S1 RNA binding domain AK40_3540 PF00155 Aminotransferase class I and II AK40_3541 PF01037 Lrp/AsnC ligand binding domain AK40_3542 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK40_3542 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK40_3543 PF08386 TAP-like protein AK40_3543 PF00561 alpha/beta hydrolase fold AK40_3545 PF00155 Aminotransferase class I and II AK40_3548 PF08810 Kinase associated protein B AK40_3549 PF00929 Exonuclease AK40_3550 PF03600 Citrate transporter AK40_3553 PF03129 Anticodon binding domain AK40_3553 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK40_3554 PF03061 Thioesterase superfamily AK40_3556 PF02632 BioY family AK40_3557 PF00483 Nucleotidyl transferase AK40_3558 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK40_3558 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK40_3558 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK40_3558 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK40_3559 PF10372 Bacterial membrane-spanning protein N-terminus AK40_3559 PF02457 DisA bacterial checkpoint controller nucleotide-binding AK40_3560 PF02789 Cytosol aminopeptidase family, N-terminal domain AK40_3560 PF00883 Cytosol aminopeptidase family, catalytic domain AK40_3561 PF06725 3D domain AK40_3563 PF13344 Haloacid dehalogenase-like hydrolase AK40_3563 PF00293 NUDIX domain AK40_3564 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_3565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_3568 PF06445 GyrI-like small molecule binding domain AK40_3571 PF04463 Protein of unknown function (DUF523) AK40_3573 PF01521 Iron-sulphur cluster biosynthesis AK40_3574 PF01678 Diaminopimelate epimerase AK40_3575 PF07293 Protein of unknown function (DUF1450) AK40_3576 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_3577 PF00664 ABC transporter transmembrane region AK40_3577 PF00005 ABC transporter AK40_3577 PF03412 Peptidase C39 family AK40_3578 PF03649 Uncharacterised protein family (UPF0014) AK40_3579 PF08274 PhnA Zinc-Ribbon AK40_3579 PF03831 PhnA domain AK40_3583 PF07315 Protein of unknown function (DUF1462) AK40_3584 PF01106 NifU-like domain AK40_3587 PF04608 Phosphatidylglycerophosphatase A AK40_359 PF03992 Antibiotic biosynthesis monooxygenase AK40_3590 PF00005 ABC transporter AK40_3590 PF02687 FtsX-like permease family AK40_3590 PF12704 MacB-like periplasmic core domain AK40_3591 PF02525 Flavodoxin-like fold AK40_3593 PF13344 Haloacid dehalogenase-like hydrolase AK40_3595 PF01934 Protein of unknown function DUF86 AK40_3596 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AK40_3599 PF06265 Protein of unknown function (DUF1027) AK40_36 PF08343 Ribonucleotide reductase N-terminal AK40_36 PF00317 Ribonucleotide reductase, all-alpha domain AK40_36 PF02867 Ribonucleotide reductase, barrel domain AK40_36 PF14528 LAGLIDADG-like domain AK40_360 PF08141 Small acid-soluble spore protein H family AK40_3600 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AK40_3601 PF07739 TipAS antibiotic-recognition domain AK40_3601 PF13411 MerR HTH family regulatory protein AK40_3602 PF10086 YhfC intramembrane metalloprotease AK40_3606 PF04055 Radical SAM superfamily AK40_3606 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AK40_3607 PF01551 Peptidase family M23 AK40_3609 PF08827 Domain of unknown function (DUF1805) AK40_3610 PF02872 5'-nucleotidase, C-terminal domain AK40_3611 PF03551 Transcriptional regulator PadR-like family AK40_3612 PF04892 VanZ like family AK40_3613 PF01458 Uncharacterized protein family (UPF0051) AK40_3614 PF01592 NifU-like N terminal domain AK40_3615 PF00266 Aminotransferase class-V AK40_3616 PF01458 Uncharacterized protein family (UPF0051) AK40_3617 PF00005 ABC transporter AK40_3618 PF03180 NLPA lipoprotein AK40_3619 PF03180 NLPA lipoprotein AK40_3620 PF00528 Binding-protein-dependent transport system inner membrane component AK40_3621 PF09383 NIL domain AK40_3621 PF00005 ABC transporter AK40_3623 PF00085 Thioredoxin AK40_3624 PF01751 Toprim domain AK40_3625 PF01597 Glycine cleavage H-protein AK40_3626 PF03960 ArsC family AK40_3636 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK40_3636 PF00056 lactate/malate dehydrogenase, NAD binding domain AK40_3642 PF08671 Anti-repressor SinI AK40_3642 PF01381 Helix-turn-helix AK40_3643 PF00440 Bacterial regulatory proteins, tetR family AK40_3643 PF13305 Tetracyclin repressor-like, C-terminal domain AK40_3644 PF00753 Metallo-beta-lactamase superfamily AK40_3647 PF00005 ABC transporter AK40_365 PF00005 ABC transporter AK40_365 PF08402 TOBE domain AK40_3652 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK40_3652 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK40_3652 PF02770 Acyl-CoA dehydrogenase, middle domain AK40_3653 PF00108 Thiolase, N-terminal domain AK40_3653 PF02803 Thiolase, C-terminal domain AK40_3654 PF00378 Enoyl-CoA hydratase/isomerase AK40_3654 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AK40_3654 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AK40_3655 PF14115 YuzL-like protein AK40_3656 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_3656 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_3657 PF01619 Proline dehydrogenase AK40_3658 PF10835 Protein of unknown function (DUF2573) AK40_3659 PF01910 Thiamine-binding protein AK40_3660 PF02743 Cache domain AK40_3660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_3660 PF00672 HAMP domain AK40_3664 PF07690 Major Facilitator Superfamily AK40_3665 PF13520 Amino acid permease AK40_3668 PF02096 60Kd inner membrane protein AK40_367 PF00528 Binding-protein-dependent transport system inner membrane component AK40_3670 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_3670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_3678 PF09335 SNARE associated Golgi protein AK40_368 PF12706 Beta-lactamase superfamily domain AK40_368 PF00753 Metallo-beta-lactamase superfamily AK40_3680 PF17969 L,D-transpeptidase C-terminal domain AK40_3680 PF03734 L,D-transpeptidase catalytic domain AK40_3681 PF00486 Transcriptional regulatory protein, C terminal AK40_3681 PF00072 Response regulator receiver domain AK40_3682 PF16736 Single Cache-like AK40_3682 PF00512 His Kinase A (phospho-acceptor) domain AK40_3682 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3682 PF00989 PAS fold AK40_3684 PF08264 Anticodon-binding domain of tRNA AK40_3684 PF09334 tRNA synthetases class I (M) AK40_3686 PF00672 HAMP domain AK40_3686 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_3686 PF02743 Cache domain AK40_3687 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_3687 PF02743 Cache domain AK40_3687 PF00672 HAMP domain AK40_3688 PF01883 Iron-sulfur cluster assembly protein AK40_3689 PF03413 Peptidase propeptide and YPEB domain AK40_3689 PF07504 Fungalysin/Thermolysin Propeptide Motif AK40_3689 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK40_3689 PF01447 Thermolysin metallopeptidase, catalytic domain AK40_3690 PF17954 Quercetinase C-terminal cupin domain AK40_3690 PF02678 Pirin AK40_3691 PF01047 MarR family AK40_3693 PF00999 Sodium/hydrogen exchanger family AK40_3694 PF02080 TrkA-C domain AK40_3695 PF01235 Sodium:alanine symporter family AK40_3696 PF00210 Ferritin-like domain AK40_3699 PF03641 Possible lysine decarboxylase AK40_37 PF00268 Ribonucleotide reductase, small chain AK40_370 PF10787 Uncharacterised protein from bacillus cereus group AK40_3701 PF00210 Ferritin-like domain AK40_3703 PF07662 Na+ dependent nucleoside transporter C-terminus AK40_3703 PF01773 Na+ dependent nucleoside transporter N-terminus AK40_3704 PF07662 Na+ dependent nucleoside transporter C-terminus AK40_3704 PF01773 Na+ dependent nucleoside transporter N-terminus AK40_3705 PF01235 Sodium:alanine symporter family AK40_3706 PF01235 Sodium:alanine symporter family AK40_3707 PF13460 NAD(P)H-binding AK40_3710 PF00248 Aldo/keto reductase family AK40_3711 PF07690 Major Facilitator Superfamily AK40_3712 PF01638 HxlR-like helix-turn-helix AK40_3713 PF07849 Protein of unknown function (DUF1641) AK40_3714 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_3715 PF00579 tRNA synthetases class I (W and Y) AK40_3715 PF01479 S4 domain AK40_3716 PF01565 FAD binding domain AK40_3716 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AK40_3718 PF17202 Single cache domain 3 AK40_3718 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_3718 PF00672 HAMP domain AK40_3720 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AK40_3721 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AK40_3724 PF07690 Major Facilitator Superfamily AK40_3725 PF12848 ABC transporter AK40_3725 PF00005 ABC transporter AK40_3726 PF13302 Acetyltransferase (GNAT) domain AK40_3728 PF07690 Major Facilitator Superfamily AK40_3729 PF07457 Protein of unknown function (DUF1516) AK40_373 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_373 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_3730 PF06146 Phosphate-starvation-inducible E AK40_3732 PF00005 ABC transporter AK40_3733 PF01032 FecCD transport family AK40_3734 PF01032 FecCD transport family AK40_3736 PF00486 Transcriptional regulatory protein, C terminal AK40_3736 PF00072 Response regulator receiver domain AK40_375 PF00300 Histidine phosphatase superfamily (branch 1) AK40_3752 PF00664 ABC transporter transmembrane region AK40_3752 PF00005 ABC transporter AK40_3752 PF03412 Peptidase C39 family AK40_3756 PF00854 POT family AK40_3759 PF01668 SmpB protein AK40_3760 PF00773 RNB domain AK40_3760 PF17876 Cold shock domain AK40_3760 PF00575 S1 RNA binding domain AK40_3760 PF08206 Ribonuclease B OB domain AK40_3761 PF12146 Serine aminopeptidase, S33 AK40_3762 PF03840 Preprotein translocase SecG subunit AK40_3763 PF04172 LrgB-like family AK40_3764 PF03788 LrgA family AK40_3765 PF01156 Inosine-uridine preferring nucleoside hydrolase AK40_3766 PF00113 Enolase, C-terminal TIM barrel domain AK40_3766 PF03952 Enolase, N-terminal domain AK40_3767 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AK40_3767 PF01676 Metalloenzyme superfamily AK40_3768 PF00121 Triosephosphate isomerase AK40_3769 PF00162 Phosphoglycerate kinase AK40_3770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AK40_3770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK40_3771 PF04198 Putative sugar-binding domain AK40_3773 PF04963 Sigma-54 factor, core binding domain AK40_3773 PF04552 Sigma-54, DNA binding domain AK40_3773 PF00309 Sigma-54 factor, Activator interacting domain (AID) AK40_3777 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK40_3778 PF07451 Stage V sporulation protein AD (SpoVAD) AK40_3779 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AK40_3781 PF04239 Protein of unknown function (DUF421) AK40_3782 PF00574 Clp protease AK40_3783 PF00381 PTS HPr component phosphorylation site AK40_3784 PF02650 WhiA C-terminal HTH domain AK40_3784 PF10298 WhiA N-terminal LAGLIDADG-like domain AK40_3784 PF14527 WhiA LAGLIDADG-like domain AK40_3785 PF01933 Uncharacterised protein family UPF0052 AK40_3786 PF03668 P-loop ATPase protein family AK40_3787 PF00293 NUDIX domain AK40_3789 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_379 PF01047 MarR family AK40_3791 PF14602 Hexapeptide repeat of succinyl-transferase AK40_3792 PF13419 Haloacid dehalogenase-like hydrolase AK40_3793 PF01790 Prolipoprotein diacylglyceryl transferase AK40_3794 PF02603 HPr Serine kinase N terminus AK40_3794 PF07475 HPr Serine kinase C-terminal domain AK40_3795 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AK40_3797 PF17760 UvrA interaction domain AK40_3797 PF17755 UvrA DNA-binding domain AK40_3797 PF00005 ABC transporter AK40_3798 PF12344 Ultra-violet resistance protein B AK40_3798 PF02151 UvrB/uvrC motif AK40_3798 PF04851 Type III restriction enzyme, res subunit AK40_3798 PF17757 UvrB interaction domain AK40_3798 PF00271 Helicase conserved C-terminal domain AK40_38 PF00392 Bacterial regulatory proteins, gntR family AK40_3801 PF07739 TipAS antibiotic-recognition domain AK40_3801 PF13411 MerR HTH family regulatory protein AK40_3805 PF03601 Conserved hypothetical protein 698 AK40_3806 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_3806 PF03466 LysR substrate binding domain AK40_3807 PF00376 MerR family regulatory protein AK40_3807 PF09278 MerR, DNA binding AK40_3808 PF03358 NADPH-dependent FMN reductase AK40_3809 PF00005 ABC transporter AK40_3809 PF12848 ABC transporter AK40_3809 PF16326 ABC transporter C-terminal domain AK40_381 PF00733 Asparagine synthase AK40_381 PF13537 Glutamine amidotransferase domain AK40_3810 PF01906 Putative heavy-metal-binding AK40_3811 PF00664 ABC transporter transmembrane region AK40_3811 PF00005 ABC transporter AK40_3812 PF17820 PDZ domain AK40_3813 PF03572 Peptidase family S41 AK40_3813 PF17820 PDZ domain AK40_3813 PF01471 Putative peptidoglycan binding domain AK40_3814 PF18075 FtsX extracellular domain AK40_3814 PF02687 FtsX-like permease family AK40_3815 PF00005 ABC transporter AK40_3816 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AK40_3817 PF03462 PCRF domain AK40_3817 PF00472 RF-1 domain AK40_3818 PF01043 SecA preprotein cross-linking domain AK40_3818 PF02810 SEC-C motif AK40_3818 PF07517 SecA DEAD-like domain AK40_3818 PF07516 SecA Wing and Scaffold domain AK40_3819 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AK40_3819 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AK40_3820 PF00313 'Cold-shock' DNA-binding domain AK40_3822 PF04851 Type III restriction enzyme, res subunit AK40_3822 PF00271 Helicase conserved C-terminal domain AK40_3823 PF00877 NlpC/P60 family AK40_3823 PF01476 LysM domain AK40_3824 PF01638 HxlR-like helix-turn-helix AK40_3825 PF02645 Uncharacterised protein, DegV family COG1307 AK40_3826 PF09186 Domain of unknown function (DUF1949) AK40_3826 PF01205 Uncharacterized protein family UPF0029 AK40_3827 PF03816 Cell envelope-related transcriptional attenuator domain AK40_3828 PF02350 UDP-N-acetylglucosamine 2-epimerase AK40_3829 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK40_3829 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK40_3829 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK40_3830 PF00953 Glycosyl transferase family 4 AK40_3832 PF00874 PRD domain AK40_3832 PF00158 Sigma-54 interaction domain AK40_3832 PF03610 PTS system fructose IIA component AK40_3835 PF04794 YdjC-like protein AK40_3836 PF02056 Family 4 glycosyl hydrolase AK40_3836 PF11975 Family 4 glycosyl hydrolase C-terminal domain AK40_3837 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AK40_3838 PF02378 Phosphotransferase system, EIIC AK40_3839 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK40_3841 PF02675 S-adenosylmethionine decarboxylase AK40_3844 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AK40_3845 PF02378 Phosphotransferase system, EIIC AK40_3846 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK40_3847 PF00375 Sodium:dicarboxylate symporter family AK40_3849 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_385 PF01545 Cation efflux family AK40_385 PF16916 Dimerisation domain of Zinc Transporter AK40_3854 PF03466 LysR substrate binding domain AK40_3854 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_3857 PF01654 Cytochrome bd terminal oxidase subunit I AK40_3858 PF02322 Cytochrome bd terminal oxidase subunit II AK40_3859 PF02040 Arsenical pump membrane protein AK40_3860 PF13667 ThiC-associated domain AK40_3860 PF01964 Radical SAM ThiC family AK40_3861 PF02652 L-lactate permease AK40_3862 PF07282 Putative transposase DNA-binding domain AK40_3862 PF01385 Probable transposase AK40_3862 PF12323 Helix-turn-helix domain AK40_3864 PF09988 Uncharacterized metal-binding protein (DUF2227) AK40_3866 PF00884 Sulfatase AK40_3867 PF01063 Amino-transferase class IV AK40_3868 PF01476 LysM domain AK40_3868 PF00877 NlpC/P60 family AK40_3869 PF01773 Na+ dependent nucleoside transporter N-terminus AK40_3869 PF07662 Na+ dependent nucleoside transporter C-terminus AK40_387 PF00392 Bacterial regulatory proteins, gntR family AK40_387 PF07729 FCD domain AK40_3873 PF02028 BCCT, betaine/carnitine/choline family transporter AK40_3874 PF06725 3D domain AK40_3874 PF01476 LysM domain AK40_3879 PF04434 SWIM zinc finger AK40_388 PF00892 EamA-like transporter family AK40_3880 PF12419 SNF2 Helicase protein AK40_3880 PF00176 SNF2 family N-terminal domain AK40_3880 PF00271 Helicase conserved C-terminal domain AK40_3886 PF04542 Sigma-70 region 2 AK40_3886 PF04545 Sigma-70, region 4 AK40_3887 PF04893 Yip1 domain AK40_3888 PF04893 Yip1 domain AK40_3889 PF02687 FtsX-like permease family AK40_3889 PF12704 MacB-like periplasmic core domain AK40_389 PF07683 Cobalamin synthesis protein cobW C-terminal domain AK40_389 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK40_3890 PF00005 ABC transporter AK40_3894 PF07690 Major Facilitator Superfamily AK40_3897 PF00512 His Kinase A (phospho-acceptor) domain AK40_3897 PF18719 ArlS sensor domain AK40_3897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_3898 PF00072 Response regulator receiver domain AK40_3898 PF00486 Transcriptional regulatory protein, C terminal AK40_3899 PF16363 GDP-mannose 4,6 dehydratase AK40_39 PF00005 ABC transporter AK40_390 PF03773 Predicted permease AK40_3902 PF16363 GDP-mannose 4,6 dehydratase AK40_3903 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK40_3903 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK40_3903 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK40_3904 PF00535 Glycosyl transferase family 2 AK40_3906 PF00535 Glycosyl transferase family 2 AK40_3906 PF01501 Glycosyl transferase family 8 AK40_3909 PF02397 Bacterial sugar transferase AK40_3910 PF00483 Nucleotidyl transferase AK40_3912 PF13614 AAA domain AK40_3913 PF02706 Chain length determinant protein AK40_3913 PF13807 G-rich domain on putative tyrosine kinase AK40_3914 PF13614 AAA domain AK40_3915 PF07977 FabA-like domain AK40_3917 PF12116 Stage III sporulation protein D AK40_3918 PF01551 Peptidase family M23 AK40_3920 PF00005 ABC transporter AK40_3921 PF04397 LytTr DNA-binding domain AK40_3921 PF00072 Response regulator receiver domain AK40_3922 PF08486 Stage II sporulation protein AK40_3923 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK40_3925 PF06612 Protein of unknown function (DUF1146) AK40_3926 PF00361 Proton-conducting membrane transporter AK40_3927 PF00361 Proton-conducting membrane transporter AK40_3928 PF00361 Proton-conducting membrane transporter AK40_3928 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AK40_3928 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AK40_3929 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AK40_393 PF03553 Na+/H+ antiporter family AK40_3930 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AK40_3932 PF00146 NADH dehydrogenase AK40_3933 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AK40_3934 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AK40_3935 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AK40_3936 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AK40_3937 PF03707 Bacterial signalling protein N terminal repeat AK40_3937 PF00563 EAL domain AK40_3937 PF00990 Diguanylate cyclase, GGDEF domain AK40_394 PF10415 Fumarase C C-terminus AK40_394 PF00206 Lyase AK40_3940 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AK40_3940 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AK40_3941 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK40_3941 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK40_3942 PF00231 ATP synthase AK40_3943 PF02874 ATP synthase alpha/beta family, beta-barrel domain AK40_3943 PF00306 ATP synthase alpha/beta chain, C terminal domain AK40_3943 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK40_3944 PF00213 ATP synthase delta (OSCP) subunit AK40_3945 PF00430 ATP synthase B/B' CF(0) AK40_3946 PF00137 ATP synthase subunit C AK40_3947 PF00119 ATP synthase A chain AK40_3948 PF03899 ATP synthase I chain AK40_3951 PF00464 Serine hydroxymethyltransferase AK40_3952 PF04260 Protein of unknown function (DUF436) AK40_3953 PF02502 Ribose/Galactose Isomerase AK40_3954 PF01451 Low molecular weight phosphotyrosine protein phosphatase AK40_3955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK40_3956 PF07681 DoxX AK40_3957 PF01613 Flavin reductase like domain AK40_3960 PF02659 Putative manganese efflux pump AK40_3961 PF03481 Putative GTP-binding controlling metal-binding AK40_3961 PF01300 Telomere recombination AK40_3963 PF09551 Stage II sporulation protein R (spore_II_R) AK40_3964 PF13847 Methyltransferase domain AK40_3964 PF17827 PrmC N-terminal domain AK40_3965 PF00472 RF-1 domain AK40_3965 PF03462 PCRF domain AK40_3966 PF00265 Thymidine kinase AK40_3967 PF01197 Ribosomal protein L31 AK40_3968 PF07497 Rho termination factor, RNA-binding domain AK40_3968 PF07498 Rho termination factor, N-terminal domain AK40_3968 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AK40_3969 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AK40_397 PF01554 MatE AK40_3970 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AK40_3971 PF01116 Fructose-bisphosphate aldolase class-II AK40_3972 PF00072 Response regulator receiver domain AK40_3973 PF10740 Domain of unknown function (DUF2529) AK40_3974 PF00117 Glutamine amidotransferase class-I AK40_3974 PF06418 CTP synthase N-terminus AK40_3975 PF05066 HB1, ASXL, restriction endonuclease HTH domain AK40_3977 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK40_3977 PF02770 Acyl-CoA dehydrogenase, middle domain AK40_3977 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK40_3978 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK40_3978 PF02770 Acyl-CoA dehydrogenase, middle domain AK40_3978 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK40_3979 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AK40_3979 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AK40_398 PF03575 Peptidase family S51 AK40_3980 PF00108 Thiolase, N-terminal domain AK40_3980 PF02803 Thiolase, C-terminal domain AK40_3981 PF02754 Cysteine-rich domain AK40_3981 PF13183 4Fe-4S dicluster domain AK40_3982 PF01381 Helix-turn-helix AK40_3989 PF00082 Subtilase family AK40_3990 PF02600 Disulfide bond formation protein DsbB AK40_3999 PF13091 PLD-like domain AK40_4000 PF03851 UV-endonuclease UvdE AK40_4001 PF03707 Bacterial signalling protein N terminal repeat AK40_4001 PF00563 EAL domain AK40_4001 PF00990 Diguanylate cyclase, GGDEF domain AK40_4005 PF00196 Bacterial regulatory proteins, luxR family AK40_4005 PF00072 Response regulator receiver domain AK40_4006 PF07730 Histidine kinase AK40_4006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4008 PF00005 ABC transporter AK40_4009 PF00557 Metallopeptidase family M24 AK40_4011 PF04389 Peptidase family M28 AK40_4011 PF02225 PA domain AK40_4015 PF04542 Sigma-70 region 2 AK40_4015 PF08281 Sigma-70, region 4 AK40_4016 PF05746 DALR anticodon binding domain AK40_4016 PF00750 tRNA synthetases class I (R) AK40_4016 PF03485 Arginyl tRNA synthetase N terminal domain AK40_4017 PF09148 Domain of unknown function (DUF1934) AK40_4018 PF17676 LD-carboxypeptidase C-terminal domain AK40_4018 PF02016 LD-carboxypeptidase N-terminal domain AK40_402 PF02683 Cytochrome C biogenesis protein transmembrane region AK40_4021 PF00491 Arginase family AK40_4022 PF17284 Spermidine synthase tetramerisation domain AK40_4023 PF07690 Major Facilitator Superfamily AK40_4024 PF13411 MerR HTH family regulatory protein AK40_4025 PF03009 Glycerophosphoryl diester phosphodiesterase family AK40_4026 PF00905 Penicillin binding protein transpeptidase domain AK40_4026 PF00912 Transglycosylase AK40_4027 PF08741 YwhD family AK40_4028 PF02163 Peptidase family M50 AK40_4029 PF01361 Tautomerase enzyme AK40_403 PF00578 AhpC/TSA family AK40_4030 PF01966 HD domain AK40_4031 PF01497 Periplasmic binding protein AK40_4032 PF00005 ABC transporter AK40_4033 PF01032 FecCD transport family AK40_4034 PF01032 FecCD transport family AK40_4035 PF07293 Protein of unknown function (DUF1450) AK40_4038 PF03099 Biotin/lipoate A/B protein ligase family AK40_4039 PF01515 Phosphate acetyl/butaryl transferase AK40_4041 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_4041 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_4042 PF07486 Cell Wall Hydrolase AK40_4043 PF09671 Spore coat protein (Spore_GerQ) AK40_4044 PF04241 Protein of unknown function (DUF423) AK40_4046 PF07885 Ion channel AK40_4046 PF02254 TrkA-N domain AK40_4047 PF00860 Permease family AK40_4049 PF12823 Domain of unknown function (DUF3817) AK40_4050 PF03167 Uracil DNA glycosylase superfamily AK40_4051 PF12679 ABC-2 family transporter protein AK40_4052 PF00005 ABC transporter AK40_4053 PF13472 GDSL-like Lipase/Acylhydrolase family AK40_4054 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK40_4054 PF00356 Bacterial regulatory proteins, lacI family AK40_4056 PF00742 Homoserine dehydrogenase AK40_4056 PF03447 Homoserine dehydrogenase, NAD binding domain AK40_4056 PF01842 ACT domain AK40_4057 PF04204 Homoserine O-succinyltransferase AK40_4058 PF01053 Cys/Met metabolism PLP-dependent enzyme AK40_4059 PF13419 Haloacid dehalogenase-like hydrolase AK40_4061 PF12323 Helix-turn-helix domain AK40_4061 PF01385 Probable transposase AK40_4061 PF07282 Putative transposase DNA-binding domain AK40_4062 PF00027 Cyclic nucleotide-binding domain AK40_4063 PF02525 Flavodoxin-like fold AK40_4064 PF00196 Bacterial regulatory proteins, luxR family AK40_4064 PF00072 Response regulator receiver domain AK40_4065 PF07730 Histidine kinase AK40_4065 PF13185 GAF domain AK40_4066 PF08543 Phosphomethylpyrimidine kinase AK40_4067 PF00990 Diguanylate cyclase, GGDEF domain AK40_4067 PF07694 5TMR of 5TMR-LYT AK40_4068 PF04328 Selenoprotein, putative AK40_4069 PF02554 Carbon starvation protein CstA AK40_4069 PF13722 5TM C-terminal transporter carbon starvation CstA AK40_4070 PF04397 LytTr DNA-binding domain AK40_4070 PF00072 Response regulator receiver domain AK40_4071 PF07690 Major Facilitator Superfamily AK40_4072 PF03808 Glycosyl transferase WecB/TagA/CpsF family AK40_4075 PF03458 UPF0126 domain AK40_4076 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_4078 PF03061 Thioesterase superfamily AK40_408 PF00291 Pyridoxal-phosphate dependent enzyme AK40_4080 PF00535 Glycosyl transferase family 2 AK40_4081 PF00005 ABC transporter AK40_4081 PF12848 ABC transporter AK40_4085 PF00535 Glycosyl transferase family 2 AK40_4086 PF00440 Bacterial regulatory proteins, tetR family AK40_4087 PF00873 AcrB/AcrD/AcrF family AK40_4088 PF01625 Peptide methionine sulfoxide reductase AK40_4088 PF01641 SelR domain AK40_4089 PF01594 AI-2E family transporter AK40_409 PF04286 Protein of unknown function (DUF445) AK40_4090 PF04172 LrgB-like family AK40_4091 PF03788 LrgA family AK40_4092 PF04397 LytTr DNA-binding domain AK40_4092 PF00072 Response regulator receiver domain AK40_4093 PF13492 GAF domain AK40_4093 PF07694 5TMR of 5TMR-LYT AK40_4093 PF06580 Histidine kinase AK40_4093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4094 PF07690 Major Facilitator Superfamily AK40_4095 PF02028 BCCT, betaine/carnitine/choline family transporter AK40_4096 PF02898 Nitric oxide synthase, oxygenase domain AK40_4097 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AK40_4097 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AK40_4099 PF02293 AmiS/UreI family transporter AK40_41 PF00005 ABC transporter AK40_4101 PF16363 GDP-mannose 4,6 dehydratase AK40_4102 PF03006 Haemolysin-III related AK40_4104 PF00271 Helicase conserved C-terminal domain AK40_4104 PF00270 DEAD/DEAH box helicase AK40_4104 PF03880 DbpA RNA binding domain AK40_4106 PF00478 IMP dehydrogenase / GMP reductase domain AK40_4107 PF08439 Oligopeptidase F AK40_4107 PF01432 Peptidase family M3 AK40_4111 PF02590 Predicted SPOUT methyltransferase AK40_4113 PF13180 PDZ domain AK40_4114 PF00753 Metallo-beta-lactamase superfamily AK40_4115 PF09648 YycH protein AK40_4116 PF07435 YycH protein AK40_4117 PF13426 PAS domain AK40_4117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4117 PF00672 HAMP domain AK40_4117 PF00512 His Kinase A (phospho-acceptor) domain AK40_4118 PF00486 Transcriptional regulatory protein, C terminal AK40_4118 PF00072 Response regulator receiver domain AK40_4123 PF00709 Adenylosuccinate synthetase AK40_4124 PF00772 DnaB-like helicase N terminal domain AK40_4124 PF03796 DnaB-like helicase C terminal domain AK40_4125 PF01281 Ribosomal protein L9, N-terminal domain AK40_4125 PF03948 Ribosomal protein L9, C-terminal domain AK40_4126 PF01368 DHH family AK40_4126 PF02272 DHHA1 domain AK40_4127 PF09991 Predicted membrane protein (DUF2232) AK40_4128 PF01084 Ribosomal protein S18 AK40_4129 PF00436 Single-strand binding protein family AK40_4130 PF01250 Ribosomal protein S6 AK40_4131 PF06071 Protein of unknown function (DUF933) AK40_4131 PF01926 50S ribosome-binding GTPase AK40_4132 PF06107 Bacterial protein of unknown function (DUF951) AK40_4133 PF00924 Mechanosensitive ion channel AK40_4134 PF06866 Protein of unknown function (DUF1256) AK40_4135 PF17762 HTH domain found in ParB protein AK40_4135 PF02195 ParB-like nuclease domain AK40_4136 PF13614 AAA domain AK40_4137 PF17762 HTH domain found in ParB protein AK40_4137 PF02195 ParB-like nuclease domain AK40_4138 PF02527 rRNA small subunit methyltransferase G AK40_4139 PF13932 GidA associated domain AK40_4139 PF01134 Glucose inhibited division protein A AK40_414 PF00072 Response regulator receiver domain AK40_414 PF00196 Bacterial regulatory proteins, luxR family AK40_4140 PF01926 50S ribosome-binding GTPase AK40_4140 PF12631 MnmE helical domain AK40_4140 PF10396 GTP-binding protein TrmE N-terminus AK40_4141 PF14804 Jag N-terminus AK40_4141 PF01424 R3H domain AK40_4142 PF02096 60Kd inner membrane protein AK40_4143 PF00825 Ribonuclease P AK40_4144 PF00468 Ribosomal protein L34 AK40_4145 PF00308 Bacterial dnaA protein AK40_4145 PF08299 Bacterial dnaA protein helix-turn-helix AK40_4145 PF11638 DnaA N-terminal domain AK40_4146 PF02768 DNA polymerase III beta subunit, C-terminal domain AK40_4146 PF02767 DNA polymerase III beta subunit, central domain AK40_4146 PF00712 DNA polymerase III beta subunit, N-terminal domain AK40_4148 PF02463 RecF/RecN/SMC N terminal domain AK40_4149 PF00204 DNA gyrase B AK40_4149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4149 PF00986 DNA gyrase B subunit, carboxyl terminus AK40_4149 PF01751 Toprim domain AK40_415 PF13185 GAF domain AK40_415 PF13492 GAF domain AK40_415 PF07730 Histidine kinase AK40_415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4150 PF00521 DNA gyrase/topoisomerase IV, subunit A AK40_4150 PF03989 DNA gyrase C-terminal domain, beta-propeller AK40_4157 PF14175 YaaC-like Protein AK40_4158 PF00478 IMP dehydrogenase / GMP reductase domain AK40_4158 PF00571 CBS domain AK40_4159 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_4159 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_416 PF00005 ABC transporter AK40_4160 PF01680 SOR/SNZ family AK40_4161 PF01174 SNO glutamine amidotransferase family AK40_4162 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK40_4162 PF02403 Seryl-tRNA synthetase N-terminal domain AK40_4165 PF01712 Deoxynucleoside kinase AK40_4166 PF01712 Deoxynucleoside kinase AK40_4167 PF00857 Isochorismatase family AK40_4168 PF14437 MafB19-like deaminase AK40_4169 PF12169 DNA polymerase III subunits gamma and tau domain III AK40_4170 PF02575 YbaB/EbfC DNA-binding family AK40_4171 PF13662 Toprim domain AK40_4171 PF02132 RecR protein AK40_4172 PF10704 Protein of unknown function (DUF2508) AK40_4173 PF07441 SigmaK-factor processing regulatory protein BofA AK40_4181 PF01276 Orn/Lys/Arg decarboxylase, major domain AK40_4181 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AK40_4182 PF02223 Thymidylate kinase AK40_4183 PF09115 DNA polymerase III, delta subunit, C terminal AK40_4184 PF04468 PSP1 C-terminal conserved region AK40_4185 PF06156 Initiation control protein YabA AK40_4186 PF05175 Methyltransferase small domain AK40_4187 PF01541 GIY-YIG catalytic domain AK40_4188 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK40_4189 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK40_4189 PF18277 AbrB C-terminal domain AK40_419 PF13091 PLD-like domain AK40_4190 PF08264 Anticodon-binding domain of tRNA AK40_4190 PF09334 tRNA synthetases class I (M) AK40_4190 PF01588 Putative tRNA binding domain AK40_4191 PF01026 TatD related DNase AK40_4192 PF13331 Domain of unknown function (DUF4093) AK40_4192 PF13662 Toprim domain AK40_4193 PF00398 Ribosomal RNA adenine dimethylase AK40_4194 PF05582 YabG peptidase U57 AK40_4195 PF06257 Biofilm formation stimulator VEG AK40_4196 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK40_4197 PF00288 GHMP kinases N terminal domain AK40_4197 PF08544 GHMP kinases C terminal AK40_4198 PF09182 Bacterial purine repressor, N-terminal AK40_4198 PF00156 Phosphoribosyl transferase domain AK40_4199 PF01042 Endoribonuclease L-PSP AK40_420 PF00696 Amino acid kinase family AK40_4200 PF04026 SpoVG AK40_4201 PF00483 Nucleotidyl transferase AK40_4201 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_4202 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AK40_4202 PF14572 Phosphoribosyl synthetase-associated domain AK40_4203 PF01195 Peptidyl-tRNA hydrolase AK40_4205 PF00270 DEAD/DEAH box helicase AK40_4205 PF17757 UvrB interaction domain AK40_4205 PF00271 Helicase conserved C-terminal domain AK40_4205 PF02559 CarD-like/TRCF domain AK40_4205 PF03461 TRCF domain AK40_4206 PF15714 Stage V sporulation protein T C-terminal, transcription factor AK40_4206 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK40_4207 PF14667 Polysaccharide biosynthesis C-terminal domain AK40_4207 PF01943 Polysaccharide biosynthesis protein AK40_4208 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK40_4208 PF03819 MazG nucleotide pyrophosphohydrolase domain AK40_4209 PF01479 S4 domain AK40_421 PF00375 Sodium:dicarboxylate symporter family AK40_4210 PF07873 YabP family AK40_4211 PF09578 Spore cortex protein YabQ (Spore_YabQ) AK40_4213 PF00575 S1 RNA binding domain AK40_4216 PF07228 Stage II sporulation protein E (SpoIIE) AK40_4217 PF09179 TilS substrate binding domain AK40_4217 PF01171 PP-loop family AK40_4217 PF11734 TilS substrate C-terminal domain AK40_4219 PF00004 ATPase family associated with various cellular activities (AAA) AK40_4219 PF01434 Peptidase family M41 AK40_4219 PF06480 FtsH Extracellular AK40_4219 PF17862 AAA+ lid domain AK40_422 PF00206 Lyase AK40_422 PF10415 Fumarase C C-terminus AK40_4220 PF03309 Type III pantothenate kinase AK40_4221 PF01430 Hsp33 protein AK40_4222 PF00291 Pyridoxal-phosphate dependent enzyme AK40_4223 PF00425 chorismate binding enzyme AK40_4223 PF04715 Anthranilate synthase component I, N terminal region AK40_4224 PF00117 Glutamine amidotransferase class-I AK40_4225 PF01063 Amino-transferase class IV AK40_4226 PF00809 Pterin binding enzyme AK40_4227 PF02152 Dihydroneopterin aldolase AK40_4228 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AK40_4229 PF01381 Helix-turn-helix AK40_423 PF00390 Malic enzyme, N-terminal domain AK40_423 PF03949 Malic enzyme, NAD binding domain AK40_4230 PF01207 Dihydrouridine synthase (Dus) AK40_4231 PF00152 tRNA synthetases class II (D, K and N) AK40_4231 PF01336 OB-fold nucleic acid binding domain AK40_4236 PF17727 CtsR C-terminal dimerization domain AK40_4236 PF05848 CtsR N-terminal HTH domain AK40_4237 PF02151 UvrB/uvrC motif AK40_4238 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AK40_4239 PF10431 C-terminal, D2-small domain, of ClpB protein AK40_4239 PF17871 AAA lid domain AK40_4239 PF07724 AAA domain (Cdc48 subfamily) AK40_4239 PF00004 ATPase family associated with various cellular activities (AAA) AK40_4239 PF02861 Clp amino terminal domain, pathogenicity island component AK40_424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4240 PF18073 Rubredoxin metal binding domain AK40_4241 PF10635 DisA bacterial checkpoint controller linker region AK40_4241 PF02457 DisA bacterial checkpoint controller nucleotide-binding AK40_4243 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AK40_4244 PF02542 YgbB family AK40_4245 PF00749 tRNA synthetases class I (E and Q), catalytic domain AK40_4246 PF00132 Bacterial transferase hexapeptide (six repeats) AK40_4246 PF06426 Serine acetyltransferase, N-terminal AK40_4247 PF09190 DALR domain AK40_4247 PF01406 tRNA synthetases class I (C) catalytic domain AK40_4248 PF00636 Ribonuclease III domain AK40_4249 PF00588 SpoU rRNA Methylase family AK40_4249 PF08032 RNA 2'-O ribose methyltransferase substrate binding AK40_425 PF08664 YcbB domain AK40_425 PF00072 Response regulator receiver domain AK40_4250 PF05991 YacP-like NYN domain AK40_4251 PF04542 Sigma-70 region 2 AK40_4251 PF08281 Sigma-70, region 4 AK40_4252 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AK40_4253 PF02357 Transcription termination factor nusG AK40_4253 PF00467 KOW motif AK40_4254 PF03946 Ribosomal protein L11, N-terminal domain AK40_4254 PF00298 Ribosomal protein L11, RNA binding domain AK40_4255 PF00687 Ribosomal protein L1p/L10e family AK40_4256 PF00466 Ribosomal protein L10 AK40_4257 PF16320 Ribosomal protein L7/L12 dimerisation domain AK40_4257 PF00542 Ribosomal protein L7/L12 C-terminal domain AK40_4258 PF05175 Methyltransferase small domain AK40_4259 PF04561 RNA polymerase Rpb2, domain 2 AK40_4259 PF00562 RNA polymerase Rpb2, domain 6 AK40_4259 PF04560 RNA polymerase Rpb2, domain 7 AK40_4259 PF04565 RNA polymerase Rpb2, domain 3 AK40_4259 PF10385 RNA polymerase beta subunit external 1 domain AK40_4259 PF04563 RNA polymerase beta subunit AK40_426 PF00176 SNF2 family N-terminal domain AK40_426 PF00271 Helicase conserved C-terminal domain AK40_426 PF04434 SWIM zinc finger AK40_4260 PF04998 RNA polymerase Rpb1, domain 5 AK40_4260 PF04983 RNA polymerase Rpb1, domain 3 AK40_4260 PF05000 RNA polymerase Rpb1, domain 4 AK40_4260 PF04997 RNA polymerase Rpb1, domain 1 AK40_4260 PF00623 RNA polymerase Rpb1, domain 2 AK40_4261 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AK40_4262 PF00164 Ribosomal protein S12/S23 AK40_4263 PF00177 Ribosomal protein S7p/S5e AK40_4264 PF00009 Elongation factor Tu GTP binding domain AK40_4264 PF03144 Elongation factor Tu domain 2 AK40_4264 PF14492 Elongation Factor G, domain II AK40_4264 PF00679 Elongation factor G C-terminus AK40_4264 PF03764 Elongation factor G, domain IV AK40_4265 PF00009 Elongation factor Tu GTP binding domain AK40_4265 PF03144 Elongation factor Tu domain 2 AK40_4265 PF03143 Elongation factor Tu C-terminal domain AK40_4266 PF00338 Ribosomal protein S10p/S20e AK40_4267 PF00297 Ribosomal protein L3 AK40_4268 PF00573 Ribosomal protein L4/L1 family AK40_4269 PF00276 Ribosomal protein L23 AK40_4270 PF03947 Ribosomal Proteins L2, C-terminal domain AK40_4270 PF00181 Ribosomal Proteins L2, RNA binding domain AK40_4271 PF00203 Ribosomal protein S19 AK40_4272 PF00237 Ribosomal protein L22p/L17e AK40_4273 PF07650 KH domain AK40_4273 PF00189 Ribosomal protein S3, C-terminal domain AK40_4274 PF00252 Ribosomal protein L16p/L10e AK40_4275 PF00831 Ribosomal L29 protein AK40_4276 PF00366 Ribosomal protein S17 AK40_4277 PF00238 Ribosomal protein L14p/L23e AK40_4278 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AK40_4278 PF00467 KOW motif AK40_4279 PF00281 Ribosomal protein L5 AK40_4279 PF00673 ribosomal L5P family C-terminus AK40_428 PF03590 Aspartate-ammonia ligase AK40_4280 PF00253 Ribosomal protein S14p/S29e AK40_4281 PF00410 Ribosomal protein S8 AK40_4282 PF00347 Ribosomal protein L6 AK40_4283 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AK40_4284 PF00333 Ribosomal protein S5, N-terminal domain AK40_4284 PF03719 Ribosomal protein S5, C-terminal domain AK40_4285 PF00327 Ribosomal protein L30p/L7e AK40_4286 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AK40_4287 PF00344 SecY translocase AK40_4288 PF05191 Adenylate kinase, active site lid AK40_4289 PF00557 Metallopeptidase family M24 AK40_429 PF01381 Helix-turn-helix AK40_4290 PF01176 Translation initiation factor 1A / IF-1 AK40_4291 PF00444 Ribosomal protein L36 AK40_4292 PF00416 Ribosomal protein S13/S18 AK40_4293 PF00411 Ribosomal protein S11 AK40_4294 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AK40_4294 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AK40_4294 PF01000 RNA polymerase Rpb3/RpoA insert domain AK40_4295 PF01196 Ribosomal protein L17 AK40_4296 PF00005 ABC transporter AK40_4297 PF00005 ABC transporter AK40_4298 PF02361 Cobalt transport protein AK40_4299 PF01416 tRNA pseudouridine synthase AK40_430 PF00696 Amino acid kinase family AK40_430 PF13840 ACT domain AK40_4300 PF00572 Ribosomal protein L13 AK40_4301 PF00380 Ribosomal protein S9/S16 AK40_4303 PF01520 N-acetylmuramoyl-L-alanine amidase AK40_4304 PF10609 NUBPL iron-transfer P-loop NTPase AK40_4305 PF17898 Spore germination GerD central core domain AK40_4306 PF14089 KinB-signalling pathway activation in sporulation AK40_4307 PF01522 Polysaccharide deacetylase AK40_432 PF13761 Domain of unknown function (DUF4166) AK40_4322 PF02595 Glycerate kinase family AK40_4323 PF00491 Arginase family AK40_4324 PF02457 DisA bacterial checkpoint controller nucleotide-binding AK40_4325 PF07949 YbbR-like protein AK40_4326 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AK40_4326 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AK40_4326 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AK40_4326 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AK40_4327 PF01380 SIS domain AK40_433 PF14158 YndJ-like protein AK40_4330 PF00392 Bacterial regulatory proteins, gntR family AK40_4330 PF07729 FCD domain AK40_4331 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK40_4331 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK40_4332 PF02447 GntP family permease AK40_4333 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AK40_4333 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK40_4334 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AK40_4334 PF00326 Prolyl oligopeptidase family AK40_434 PF00293 NUDIX domain AK40_4341 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4342 PF09383 NIL domain AK40_4342 PF00005 ABC transporter AK40_4343 PF03180 NLPA lipoprotein AK40_4346 PF01565 FAD binding domain AK40_4347 PF07690 Major Facilitator Superfamily AK40_4349 PF07690 Major Facilitator Superfamily AK40_435 PF00395 S-layer homology domain AK40_435 PF02368 Bacterial Ig-like domain (group 2) AK40_4351 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4352 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4352 PF12911 N-terminal TM domain of oligopeptide transport permease C AK40_4353 PF00005 ABC transporter AK40_4353 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_4354 PF00005 ABC transporter AK40_4354 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_4355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_4357 PF12833 Helix-turn-helix domain AK40_4359 PF00440 Bacterial regulatory proteins, tetR family AK40_4361 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_4362 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_4363 PF00248 Aldo/keto reductase family AK40_4364 PF03807 NADP oxidoreductase coenzyme F420-dependent AK40_4364 PF14748 Pyrroline-5-carboxylate reductase dimerisation AK40_4365 PF04973 Nicotinamide mononucleotide transporter AK40_4366 PF06800 Sugar transport protein AK40_4367 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4369 PF12727 PBP superfamily domain AK40_4369 PF12728 Helix-turn-helix domain AK40_4372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_4372 PF03466 LysR substrate binding domain AK40_4373 PF00892 EamA-like transporter family AK40_4374 PF14142 YrzO-like protein AK40_4376 PF01553 Acyltransferase AK40_4378 PF00356 Bacterial regulatory proteins, lacI family AK40_4378 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AK40_4380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_4380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_4385 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) AK40_4389 PF16326 ABC transporter C-terminal domain AK40_4389 PF12848 ABC transporter AK40_4389 PF00005 ABC transporter AK40_439 PF02554 Carbon starvation protein CstA AK40_4392 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_4393 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_4395 PF00005 ABC transporter AK40_4396 PF00005 ABC transporter AK40_4396 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_440 PF03976 Polyphosphate kinase 2 (PPK2) AK40_4403 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_4404 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK40_4406 PF13520 Amino acid permease AK40_4408 PF07478 D-ala D-ala ligase C-terminus AK40_4408 PF01820 D-ala D-ala ligase N-terminus AK40_4409 PF01225 Mur ligase family, catalytic domain AK40_4409 PF08245 Mur ligase middle domain AK40_4409 PF02875 Mur ligase family, glutamate ligase domain AK40_441 PF07690 Major Facilitator Superfamily AK40_4410 PF00271 Helicase conserved C-terminal domain AK40_4410 PF00270 DEAD/DEAH box helicase AK40_4411 PF01694 Rhomboid family AK40_4412 PF03851 UV-endonuclease UvdE AK40_4413 PF01648 4'-phosphopantetheinyl transferase superfamily AK40_4415 PF01168 Alanine racemase, N-terminal domain AK40_4415 PF00842 Alanine racemase, C-terminal domain AK40_4416 PF01402 Ribbon-helix-helix protein, copG family AK40_4417 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AK40_4418 PF16921 Tex protein YqgF-like domain AK40_4418 PF09371 Tex-like protein N-terminal domain AK40_4418 PF17674 HHH domain AK40_4418 PF00575 S1 RNA binding domain AK40_4419 PF10263 SprT-like family AK40_4419 PF17283 SprT-like zinc ribbon domain AK40_442 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK40_442 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK40_4437 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AK40_4438 PF00814 Glycoprotease family AK40_4439 PF00583 Acetyltransferase (GNAT) family AK40_444 PF16360 GTP-binding GTPase Middle Region AK40_444 PF13167 GTP-binding GTPase N-terminal AK40_444 PF01926 50S ribosome-binding GTPase AK40_4440 PF00814 Glycoprotease family AK40_4441 PF12848 ABC transporter AK40_4441 PF16326 ABC transporter C-terminal domain AK40_4441 PF00005 ABC transporter AK40_4442 PF02629 CoA binding domain AK40_4442 PF06971 Putative DNA-binding protein N-terminus AK40_4444 PF02517 CPBP intramembrane metalloprotease AK40_4445 PF00166 Chaperonin 10 Kd subunit AK40_4446 PF00118 TCP-1/cpn60 chaperonin family AK40_4447 PF04740 LXG domain of WXG superfamily AK40_4447 PF14449 Pre-toxin TG AK40_4449 PF02540 NAD synthase AK40_4449 PF00117 Glutamine amidotransferase class-I AK40_4449 PF00958 GMP synthase C terminal domain AK40_445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_4450 PF00860 Permease family AK40_4451 PF00072 Response regulator receiver domain AK40_4451 PF00486 Transcriptional regulatory protein, C terminal AK40_4452 PF00512 His Kinase A (phospho-acceptor) domain AK40_4452 PF16736 Single Cache-like AK40_4452 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4452 PF00989 PAS fold AK40_4458 PF01323 DSBA-like thioredoxin domain AK40_446 PF07690 Major Facilitator Superfamily AK40_4468 PF02673 Bacitracin resistance protein BacA AK40_447 PF00291 Pyridoxal-phosphate dependent enzyme AK40_4470 PF00005 ABC transporter AK40_4471 PF00512 His Kinase A (phospho-acceptor) domain AK40_4471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4472 PF00486 Transcriptional regulatory protein, C terminal AK40_4472 PF00072 Response regulator receiver domain AK40_4477 PF00892 EamA-like transporter family AK40_4483 PF00731 AIR carboxylase AK40_4484 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AK40_4484 PF02222 ATP-grasp domain AK40_4485 PF00206 Lyase AK40_4485 PF10397 Adenylosuccinate lyase C-terminus AK40_4486 PF01259 SAICAR synthetase AK40_4487 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AK40_4489 PF00586 AIR synthase related protein, N-terminal domain AK40_4489 PF02769 AIR synthase related protein, C-terminal domain AK40_4489 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AK40_4490 PF00156 Phosphoribosyl transferase domain AK40_4491 PF02769 AIR synthase related protein, C-terminal domain AK40_4491 PF00586 AIR synthase related protein, N-terminal domain AK40_4492 PF00551 Formyl transferase AK40_4493 PF02142 MGS-like domain AK40_4493 PF01808 AICARFT/IMPCHase bienzyme AK40_4494 PF02843 Phosphoribosylglycinamide synthetase, C domain AK40_4494 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AK40_4494 PF02844 Phosphoribosylglycinamide synthetase, N domain AK40_4498 PF01884 PcrB family AK40_4499 PF13361 UvrD-like helicase C-terminal domain AK40_4499 PF00580 UvrD/REP helicase N-terminal domain AK40_45 PF01037 Lrp/AsnC ligand binding domain AK40_450 PF01943 Polysaccharide biosynthesis protein AK40_450 PF14667 Polysaccharide biosynthesis C-terminal domain AK40_4500 PF12826 Helix-hairpin-helix motif AK40_4500 PF00533 BRCA1 C Terminus (BRCT) domain AK40_4500 PF01653 NAD-dependent DNA ligase adenylation domain AK40_4500 PF03120 NAD-dependent DNA ligase OB-fold domain AK40_4500 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AK40_4501 PF07537 CamS sex pheromone cAM373 precursor AK40_4502 PF01925 Sulfite exporter TauE/SafE AK40_4503 PF00171 Aldehyde dehydrogenase family AK40_4505 PF00857 Isochorismatase family AK40_4506 PF00005 ABC transporter AK40_4506 PF09383 NIL domain AK40_4507 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4508 PF03180 NLPA lipoprotein AK40_451 PF00209 Sodium:neurotransmitter symporter family AK40_4511 PF17886 HSP20-like domain found in ArsA AK40_4511 PF02374 Anion-transporting ATPase AK40_4512 PF01047 MarR family AK40_4513 PF05360 yiaA/B two helix domain AK40_4514 PF02686 Glu-tRNAGln amidotransferase C subunit AK40_4515 PF01425 Amidase AK40_4516 PF02934 GatB/GatE catalytic domain AK40_4516 PF02637 GatB domain AK40_4517 PF00781 Diacylglycerol kinase catalytic domain AK40_4518 PF13419 Haloacid dehalogenase-like hydrolase AK40_4519 PF00202 Aminotransferase class-III AK40_452 PF01522 Polysaccharide deacetylase AK40_452 PF00457 Glycosyl hydrolases family 11 AK40_452 PF03422 Carbohydrate binding module (family 6) AK40_4520 PF00158 Sigma-54 interaction domain AK40_4521 PF00171 Aldehyde dehydrogenase family AK40_4522 PF00893 Small Multidrug Resistance protein AK40_4523 PF02073 Thermophilic metalloprotease (M29) AK40_4526 PF07662 Na+ dependent nucleoside transporter C-terminus AK40_4526 PF01773 Na+ dependent nucleoside transporter N-terminus AK40_4526 PF07670 Nucleoside recognition AK40_4527 PF01938 TRAM domain AK40_4527 PF02475 Met-10+ like-protein AK40_4527 PF05958 tRNA (Uracil-5-)-methyltransferase AK40_4528 PF01207 Dihydrouridine synthase (Dus) AK40_4529 PF00512 His Kinase A (phospho-acceptor) domain AK40_4529 PF13188 PAS domain AK40_4529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4529 PF00989 PAS fold AK40_4529 PF13426 PAS domain AK40_4530 PF07308 Protein of unknown function (DUF1456) AK40_4533 PF13378 Enolase C-terminal domain-like AK40_4533 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AK40_4536 PF07687 Peptidase dimerisation domain AK40_4536 PF01546 Peptidase family M20/M25/M40 AK40_4539 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_4539 PF13192 Thioredoxin domain AK40_454 PF04239 Protein of unknown function (DUF421) AK40_4540 PF00578 AhpC/TSA family AK40_4541 PF01636 Phosphotransferase enzyme family AK40_4543 PF00596 Class II Aldolase and Adducin N-terminal domain AK40_4544 PF01032 FecCD transport family AK40_4545 PF01032 FecCD transport family AK40_4546 PF01497 Periplasmic binding protein AK40_4547 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_4549 PF12728 Helix-turn-helix domain AK40_4555 PF00989 PAS fold AK40_4555 PF13188 PAS domain AK40_4555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4555 PF13426 PAS domain AK40_4555 PF00512 His Kinase A (phospho-acceptor) domain AK40_4559 PF10127 RNA repair pathway DNA polymerase beta family AK40_4560 PF07690 Major Facilitator Superfamily AK40_4561 PF01266 FAD dependent oxidoreductase AK40_4561 PF00355 Rieske [2Fe-2S] domain AK40_4563 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4564 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK40_4565 PF00005 ABC transporter AK40_4566 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_4566 PF12729 Four helix bundle sensory module for signal transduction AK40_4566 PF00672 HAMP domain AK40_4567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_4567 PF00672 HAMP domain AK40_4567 PF02743 Cache domain AK40_4568 PF00128 Alpha amylase, catalytic domain AK40_4568 PF16657 Maltogenic Amylase, C-terminal domain AK40_4569 PF00367 phosphotransferase system, EIIB AK40_4569 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK40_4569 PF02378 Phosphotransferase system, EIIC AK40_457 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK40_457 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK40_4570 PF03372 Endonuclease/Exonuclease/phosphatase family AK40_4571 PF01061 ABC-2 type transporter AK40_4572 PF01751 Toprim domain AK40_4572 PF01131 DNA topoisomerase AK40_4573 PF02110 Hydroxyethylthiazole kinase family AK40_4574 PF02581 Thiamine monophosphate synthase AK40_4575 PF03605 Anaerobic c4-dicarboxylate membrane transporter AK40_4576 PF00672 HAMP domain AK40_4576 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_4577 PF01910 Thiamine-binding protein AK40_4578 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4580 PF00005 ABC transporter AK40_4581 PF00005 ABC transporter AK40_4581 PF12848 ABC transporter AK40_4582 PF00041 Fibronectin type III domain AK40_4582 PF00704 Glycosyl hydrolases family 18 AK40_4588 PF08360 QacR-like protein, C-terminal region AK40_4588 PF00440 Bacterial regulatory proteins, tetR family AK40_4592 PF11700 Vacuole effluxer Atg22 like AK40_4595 PF09180 Prolyl-tRNA synthetase, C-terminal AK40_4595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK40_4595 PF03129 Anticodon binding domain AK40_4596 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK40_4596 PF03129 Anticodon binding domain AK40_4596 PF09180 Prolyl-tRNA synthetase, C-terminal AK40_4598 PF00480 ROK family AK40_4599 PF02342 TerD domain AK40_4600 PF02342 TerD domain AK40_4601 PF02342 TerD domain AK40_4602 PF03741 Integral membrane protein TerC family AK40_4603 PF14266 Putative component of 'biosynthetic module' AK40_4604 PF05816 Toxic anion resistance protein (TelA) AK40_4605 PF00690 Cation transporter/ATPase, N-terminus AK40_4605 PF00689 Cation transporting ATPase, C-terminus AK40_4606 PF06569 Protein of unknown function (DUF1128) AK40_4607 PF01451 Low molecular weight phosphotyrosine protein phosphatase AK40_4609 PF03631 Virulence factor BrkB AK40_461 PF01625 Peptide methionine sulfoxide reductase AK40_4611 PF00892 EamA-like transporter family AK40_4613 PF10502 Signal peptidase, peptidase S26 AK40_4615 PF09335 SNARE associated Golgi protein AK40_4618 PF16242 Pyridoxamine 5'-phosphate oxidase like AK40_4619 PF01699 Sodium/calcium exchanger protein AK40_4620 PF14167 YfkD-like protein AK40_4621 PF08756 YfkB-like domain AK40_4621 PF04055 Radical SAM superfamily AK40_4623 PF05683 Fumarase C-terminus AK40_4623 PF05681 Fumarate hydratase (Fumerase) AK40_4624 PF01522 Polysaccharide deacetylase AK40_4625 PF00730 HhH-GPD superfamily base excision DNA repair protein AK40_4626 PF05958 tRNA (Uracil-5-)-methyltransferase AK40_4626 PF01938 TRAM domain AK40_4627 PF01416 tRNA pseudouridine synthase AK40_4629 PF00158 Sigma-54 interaction domain AK40_4629 PF02954 Bacterial regulatory protein, Fis family AK40_4629 PF13426 PAS domain AK40_463 PF01063 Amino-transferase class IV AK40_4631 PF00324 Amino acid permease AK40_4632 PF01546 Peptidase family M20/M25/M40 AK40_4632 PF07687 Peptidase dimerisation domain AK40_4637 PF04960 Glutaminase AK40_4638 PF02378 Phosphotransferase system, EIIC AK40_4638 PF00367 phosphotransferase system, EIIB AK40_4639 PF00144 Beta-lactamase AK40_464 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_464 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_464 PF00205 Thiamine pyrophosphate enzyme, central domain AK40_4642 PF00535 Glycosyl transferase family 2 AK40_4643 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AK40_4643 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AK40_4643 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AK40_4644 PF01370 NAD dependent epimerase/dehydratase family AK40_4644 PF02911 Formyl transferase, C-terminal domain AK40_4644 PF00551 Formyl transferase AK40_4645 PF00535 Glycosyl transferase family 2 AK40_4646 PF02901 Pyruvate formate lyase-like AK40_4646 PF01228 Glycine radical AK40_4647 PF04055 Radical SAM superfamily AK40_4648 PF04101 Glycosyltransferase family 28 C-terminal domain AK40_4648 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AK40_4651 PF01979 Amidohydrolase family AK40_4652 PF01370 NAD dependent epimerase/dehydratase family AK40_4652 PF08338 Domain of unknown function (DUF1731) AK40_4653 PF02631 RecX family AK40_4656 PF08176 Small acid-soluble spore protein K family AK40_4657 PF14043 WVELL protein AK40_4658 PF04307 LexA-binding, inner membrane-associated putative hydrolase AK40_4659 PF00730 HhH-GPD superfamily base excision DNA repair protein AK40_4659 PF14815 NUDIX domain AK40_466 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AK40_466 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AK40_4661 PF04259 Small, acid-soluble spore protein, gamma-type AK40_4663 PF14182 YgaB-like protein AK40_4664 PF04167 Protein of unknown function (DUF402) AK40_4665 PF00005 ABC transporter AK40_4665 PF00664 ABC transporter transmembrane region AK40_4666 PF06081 Aromatic acid exporter family member 1 AK40_4667 PF01645 Conserved region in glutamate synthase AK40_4667 PF04898 Glutamate synthase central domain AK40_4667 PF01493 GXGXG motif AK40_4667 PF00310 Glutamine amidotransferases class-II AK40_4668 PF00202 Aminotransferase class-III AK40_4669 PF00005 ABC transporter AK40_467 PF00920 Dehydratase family AK40_4672 PF07885 Ion channel AK40_4673 PF00578 AhpC/TSA family AK40_4674 PF01475 Ferric uptake regulator family AK40_4675 PF11023 Zinc-ribbon containing domain AK40_468 PF00585 C-terminal regulatory domain of Threonine dehydratase AK40_468 PF00291 Pyridoxal-phosphate dependent enzyme AK40_4695 PF01709 Transcriptional regulator AK40_4696 PF00293 NUDIX domain AK40_4696 PF13344 Haloacid dehalogenase-like hydrolase AK40_47 PF00857 Isochorismatase family AK40_470 PF09587 Bacterial capsule synthesis protein PGA_cap AK40_4702 PF00005 ABC transporter AK40_4702 PF00664 ABC transporter transmembrane region AK40_4705 PF00905 Penicillin binding protein transpeptidase domain AK40_4705 PF00912 Transglycosylase AK40_4706 PF13462 Thioredoxin AK40_4709 PF08331 Domain of unknown function (DUF1730) AK40_4710 PF12671 Putative amidase domain AK40_4711 PF00588 SpoU rRNA Methylase family AK40_4712 PF03707 Bacterial signalling protein N terminal repeat AK40_4712 PF00990 Diguanylate cyclase, GGDEF domain AK40_4712 PF00563 EAL domain AK40_4714 PF06798 PrkA serine protein kinase C-terminal domain AK40_4714 PF08298 PrkA AAA domain AK40_4715 PF04285 Protein of unknown function (DUF444) AK40_4720 PF02028 BCCT, betaine/carnitine/choline family transporter AK40_4721 PF08453 Peptidase family M9 N-terminal AK40_4721 PF01752 Collagenase AK40_4721 PF18496 Collagenase G catalytic helper subdomain AK40_4723 PF01145 SPFH domain / Band 7 family AK40_4723 PF15975 Flotillin AK40_4724 PF00672 HAMP domain AK40_4724 PF02743 Cache domain AK40_4724 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_4725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4725 PF17203 Single cache domain 3 AK40_4725 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK40_4725 PF00989 PAS fold AK40_4726 PF00072 Response regulator receiver domain AK40_4726 PF12431 Transcriptional regulator AK40_4727 PF03600 Citrate transporter AK40_473 PF07690 Major Facilitator Superfamily AK40_4731 PF00149 Calcineurin-like phosphoesterase AK40_4732 PF00486 Transcriptional regulatory protein, C terminal AK40_4732 PF00072 Response regulator receiver domain AK40_4733 PF00512 His Kinase A (phospho-acceptor) domain AK40_4733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4735 PF13529 Peptidase_C39 like family AK40_4736 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_4736 PF00672 HAMP domain AK40_4736 PF02743 Cache domain AK40_4737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4737 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK40_4737 PF00989 PAS fold AK40_4737 PF17203 Single cache domain 3 AK40_4738 PF00072 Response regulator receiver domain AK40_4739 PF03390 2-hydroxycarboxylate transporter family AK40_474 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AK40_4740 PF03949 Malic enzyme, NAD binding domain AK40_4740 PF00390 Malic enzyme, N-terminal domain AK40_4742 PF00892 EamA-like transporter family AK40_4743 PF00392 Bacterial regulatory proteins, gntR family AK40_4743 PF00155 Aminotransferase class I and II AK40_4745 PF00672 HAMP domain AK40_4745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4745 PF18698 Histidine kinase sensor domain AK40_4745 PF00512 His Kinase A (phospho-acceptor) domain AK40_4745 PF00989 PAS fold AK40_4746 PF00072 Response regulator receiver domain AK40_4746 PF00486 Transcriptional regulatory protein, C terminal AK40_4748 PF00583 Acetyltransferase (GNAT) family AK40_4748 PF13508 Acetyltransferase (GNAT) domain AK40_4749 PF02634 FdhD/NarQ family AK40_4750 PF00384 Molybdopterin oxidoreductase AK40_4750 PF00037 4Fe-4S binding domain AK40_4750 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AK40_4750 PF01568 Molydopterin dinucleotide binding domain AK40_4750 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK40_4751 PF07849 Protein of unknown function (DUF1641) AK40_4753 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AK40_4753 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AK40_4754 PF13520 Amino acid permease AK40_4755 PF01022 Bacterial regulatory protein, arsR family AK40_4756 PF00403 Heavy-metal-associated domain AK40_4757 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AK40_4757 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AK40_4757 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AK40_4761 PF01447 Thermolysin metallopeptidase, catalytic domain AK40_4761 PF07504 Fungalysin/Thermolysin Propeptide Motif AK40_4761 PF03413 Peptidase propeptide and YPEB domain AK40_4761 PF02868 Thermolysin metallopeptidase, alpha-helical domain AK40_4765 PF04294 VanW like protein AK40_4766 PF03816 Cell envelope-related transcriptional attenuator domain AK40_4767 PF01773 Na+ dependent nucleoside transporter N-terminus AK40_4767 PF07662 Na+ dependent nucleoside transporter C-terminus AK40_4768 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_4769 PF03471 Transporter associated domain AK40_4769 PF01595 Cyclin M transmembrane N-terminal domain AK40_4769 PF00571 CBS domain AK40_477 PF00144 Beta-lactamase AK40_4770 PF00206 Lyase AK40_4770 PF10415 Fumarase C C-terminus AK40_4771 PF02652 L-lactate permease AK40_4772 PF01022 Bacterial regulatory protein, arsR family AK40_4773 PF08141 Small acid-soluble spore protein H family AK40_4774 PF00854 POT family AK40_4775 PF01497 Periplasmic binding protein AK40_4776 PF01032 FecCD transport family AK40_4777 PF01032 FecCD transport family AK40_4778 PF00005 ABC transporter AK40_4779 PF00155 Aminotransferase class I and II AK40_478 PF04397 LytTr DNA-binding domain AK40_478 PF00072 Response regulator receiver domain AK40_4780 PF01370 NAD dependent epimerase/dehydratase family AK40_4781 PF00293 NUDIX domain AK40_4781 PF13344 Haloacid dehalogenase-like hydrolase AK40_4782 PF00092 von Willebrand factor type A domain AK40_4783 PF07728 AAA domain (dynein-related subfamily) AK40_4784 PF13396 Phospholipase_D-nuclease N-terminal AK40_4784 PF13091 PLD-like domain AK40_4786 PF03707 Bacterial signalling protein N terminal repeat AK40_4786 PF00990 Diguanylate cyclase, GGDEF domain AK40_4786 PF00563 EAL domain AK40_4787 PF13520 Amino acid permease AK40_4788 PF07702 UTRA domain AK40_4788 PF00392 Bacterial regulatory proteins, gntR family AK40_4789 PF02378 Phosphotransferase system, EIIC AK40_4789 PF00367 phosphotransferase system, EIIB AK40_479 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AK40_479 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AK40_4790 PF16657 Maltogenic Amylase, C-terminal domain AK40_4790 PF00128 Alpha amylase, catalytic domain AK40_4793 PF03323 Bacillus/Clostridium GerA spore germination protein AK40_4794 PF13492 GAF domain AK40_4794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4794 PF07730 Histidine kinase AK40_4795 PF00196 Bacterial regulatory proteins, luxR family AK40_4795 PF00072 Response regulator receiver domain AK40_4796 PF00082 Subtilase family AK40_4796 PF13860 FlgD Ig-like domain AK40_4796 PF02225 PA domain AK40_4796 PF05922 Peptidase inhibitor I9 AK40_4797 PF12389 Camelysin metallo-endopeptidase AK40_4799 PF01636 Phosphotransferase enzyme family AK40_4800 PF01235 Sodium:alanine symporter family AK40_4801 PF00005 ABC transporter AK40_4802 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK40_4803 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4804 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4805 PF00324 Amino acid permease AK40_4808 PF08281 Sigma-70, region 4 AK40_4808 PF04542 Sigma-70 region 2 AK40_4810 PF08279 HTH domain AK40_4810 PF13280 WYL domain AK40_4811 PF01872 RibD C-terminal domain AK40_4812 PF00672 HAMP domain AK40_4812 PF00989 PAS fold AK40_4812 PF00512 His Kinase A (phospho-acceptor) domain AK40_4812 PF18698 Histidine kinase sensor domain AK40_4812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_4813 PF00072 Response regulator receiver domain AK40_4813 PF00486 Transcriptional regulatory protein, C terminal AK40_4815 PF01740 STAS domain AK40_4815 PF00916 Sulfate permease family AK40_4816 PF00582 Universal stress protein family AK40_4818 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_4819 PF00528 Binding-protein-dependent transport system inner membrane component AK40_482 PF01979 Amidohydrolase family AK40_4820 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4821 PF00005 ABC transporter AK40_4821 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_4822 PF00005 ABC transporter AK40_4822 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_4823 PF07690 Major Facilitator Superfamily AK40_4824 PF01047 MarR family AK40_4825 PF07690 Major Facilitator Superfamily AK40_4826 PF00356 Bacterial regulatory proteins, lacI family AK40_4827 PF00294 pfkB family carbohydrate kinase AK40_4828 PF05025 RbsD / FucU transport protein family AK40_4829 PF00005 ABC transporter AK40_483 PF14436 Bacterial EndoU nuclease AK40_483 PF04740 LXG domain of WXG superfamily AK40_4830 PF02653 Branched-chain amino acid transport system / permease component AK40_4831 PF13407 Periplasmic binding protein domain AK40_4832 PF00923 Transaldolase/Fructose-6-phosphate aldolase AK40_4833 PF05547 Immune inhibitor A peptidase M6 AK40_4835 PF08240 Alcohol dehydrogenase GroES-like domain AK40_4835 PF00107 Zinc-binding dehydrogenase AK40_4837 PF00882 Zinc dependent phospholipase C AK40_4838 PF03372 Endonuclease/Exonuclease/phosphatase family AK40_4843 PF02673 Bacitracin resistance protein BacA AK40_4844 PF02743 Cache domain AK40_4844 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_4844 PF00672 HAMP domain AK40_4845 PF01476 LysM domain AK40_4845 PF06725 3D domain AK40_4846 PF01381 Helix-turn-helix AK40_4848 PF04203 Sortase domain AK40_4849 PF00854 POT family AK40_4851 PF05525 Branched-chain amino acid transport protein AK40_4854 PF00324 Amino acid permease AK40_4855 PF00860 Permease family AK40_4858 PF13673 Acetyltransferase (GNAT) domain AK40_486 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_4860 PF02254 TrkA-N domain AK40_4860 PF02080 TrkA-C domain AK40_4860 PF00999 Sodium/hydrogen exchanger family AK40_4862 PF00510 Cytochrome c oxidase subunit III AK40_4863 PF00115 Cytochrome C and Quinol oxidase polypeptide I AK40_4864 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AK40_4865 PF13529 Peptidase_C39 like family AK40_4866 PF07687 Peptidase dimerisation domain AK40_4866 PF01546 Peptidase family M20/M25/M40 AK40_4867 PF11755 Protein of unknown function (DUF3311) AK40_4868 PF00474 Sodium:solute symporter family AK40_4869 PF03323 Bacillus/Clostridium GerA spore germination protein AK40_4870 PF03845 Spore germination protein AK40_4871 PF05504 Spore germination B3/ GerAC like, C-terminal AK40_4872 PF07664 Ferrous iron transport protein B C terminus AK40_4872 PF02421 Ferrous iron transport protein B AK40_4872 PF07670 Nucleoside recognition AK40_4872 PF17910 FeoB cytosolic helical domain AK40_4873 PF07664 Ferrous iron transport protein B C terminus AK40_4873 PF17910 FeoB cytosolic helical domain AK40_4873 PF02421 Ferrous iron transport protein B AK40_4873 PF07670 Nucleoside recognition AK40_4874 PF04023 FeoA domain AK40_4874 PF07670 Nucleoside recognition AK40_4874 PF07664 Ferrous iron transport protein B C terminus AK40_4874 PF17910 FeoB cytosolic helical domain AK40_4874 PF02421 Ferrous iron transport protein B AK40_4875 PF12849 PBP superfamily domain AK40_4876 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4877 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4879 PF00873 AcrB/AcrD/AcrF family AK40_49 PF17676 LD-carboxypeptidase C-terminal domain AK40_49 PF02016 LD-carboxypeptidase N-terminal domain AK40_490 PF13186 Iron-sulfur cluster-binding domain AK40_490 PF04055 Radical SAM superfamily AK40_4904 PF00571 CBS domain AK40_4907 PF08239 Bacterial SH3 domain AK40_4907 PF00246 Zinc carboxypeptidase AK40_4908 PF03070 TENA/THI-4/PQQC family AK40_4909 PF00005 ABC transporter AK40_491 PF13302 Acetyltransferase (GNAT) domain AK40_4910 PF00528 Binding-protein-dependent transport system inner membrane component AK40_4911 PF09084 NMT1/THI5 like AK40_4912 PF02581 Thiamine monophosphate synthase AK40_4913 PF01266 FAD dependent oxidoreductase AK40_4914 PF02597 ThiS family AK40_4915 PF05690 Thiazole biosynthesis protein ThiG AK40_4916 PF00899 ThiF family AK40_4917 PF08543 Phosphomethylpyrimidine kinase AK40_492 PF00486 Transcriptional regulatory protein, C terminal AK40_492 PF00072 Response regulator receiver domain AK40_4921 PF03814 Potassium-transporting ATPase A subunit AK40_4923 PF02669 K+-transporting ATPase, c chain AK40_4924 PF02702 Osmosensitive K+ channel His kinase sensor domain AK40_4925 PF07690 Major Facilitator Superfamily AK40_4926 PF01047 MarR family AK40_493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_493 PF00512 His Kinase A (phospho-acceptor) domain AK40_4931 PF12704 MacB-like periplasmic core domain AK40_4931 PF02687 FtsX-like permease family AK40_4931 PF00005 ABC transporter AK40_4933 PF00860 Permease family AK40_4935 PF17969 L,D-transpeptidase C-terminal domain AK40_4935 PF03734 L,D-transpeptidase catalytic domain AK40_4937 PF00294 pfkB family carbohydrate kinase AK40_4938 PF08244 Glycosyl hydrolases family 32 C terminal AK40_4938 PF00251 Glycosyl hydrolases family 32 N-terminal domain AK40_4939 PF02378 Phosphotransferase system, EIIC AK40_4939 PF00367 phosphotransferase system, EIIB AK40_4940 PF13407 Periplasmic binding protein domain AK40_4940 PF00356 Bacterial regulatory proteins, lacI family AK40_4942 PF00085 Thioredoxin AK40_4943 PF02600 Disulfide bond formation protein DsbB AK40_4944 PF14148 YhdB-like protein AK40_4946 PF03845 Spore germination protein AK40_4948 PF03323 Bacillus/Clostridium GerA spore germination protein AK40_4950 PF00881 Nitroreductase family AK40_4951 PF04293 SpoVR like protein AK40_4952 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK40_4952 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_4953 PF02583 Metal-sensitive transcriptional repressor AK40_4954 PF01206 Sulfurtransferase TusA AK40_4954 PF00581 Rhodanese-like domain AK40_4955 PF00581 Rhodanese-like domain AK40_4955 PF00753 Metallo-beta-lactamase superfamily AK40_4956 PF01206 Sulfurtransferase TusA AK40_4957 PF00581 Rhodanese-like domain AK40_4959 PF13686 DsrE/DsrF/DrsH-like family AK40_4960 PF01925 Sulfite exporter TauE/SafE AK40_4962 PF03816 Cell envelope-related transcriptional attenuator domain AK40_4963 PF00107 Zinc-binding dehydrogenase AK40_4963 PF08240 Alcohol dehydrogenase GroES-like domain AK40_4964 PF02690 Na+/Pi-cotransporter AK40_4965 PF07690 Major Facilitator Superfamily AK40_4967 PF00874 PRD domain AK40_4967 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AK40_4967 PF08279 HTH domain AK40_4967 PF05043 Mga helix-turn-helix domain AK40_4968 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AK40_4969 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AK40_497 PF01566 Natural resistance-associated macrophage protein AK40_4970 PF02378 Phosphotransferase system, EIIC AK40_4973 PF06725 3D domain AK40_4973 PF01476 LysM domain AK40_4974 PF02687 FtsX-like permease family AK40_4974 PF12704 MacB-like periplasmic core domain AK40_4975 PF00005 ABC transporter AK40_4977 PF09529 Integral membrane protein (intg_mem_TP0381) AK40_4980 PF02687 FtsX-like permease family AK40_4981 PF05525 Branched-chain amino acid transport protein AK40_4982 PF05067 Manganese containing catalase AK40_4983 PF12652 CotJB protein AK40_4984 PF11007 Spore coat associated protein JA (CotJA) AK40_4987 PF02735 Ku70/Ku80 beta-barrel domain AK40_4989 PF09335 SNARE associated Golgi protein AK40_4996 PF13520 Amino acid permease AK40_4997 PF00999 Sodium/hydrogen exchanger family AK40_4999 PF01418 Helix-turn-helix domain, rpiR family AK40_4999 PF01380 SIS domain AK40_5 PF08402 TOBE domain AK40_5 PF00005 ABC transporter AK40_50 PF03060 Nitronate monooxygenase AK40_500 PF02558 Ketopantoate reductase PanE/ApbA AK40_500 PF08546 Ketopantoate reductase PanE/ApbA C terminal AK40_5000 PF01380 SIS domain AK40_5001 PF02378 Phosphotransferase system, EIIC AK40_5001 PF00367 phosphotransferase system, EIIB AK40_5004 PF07681 DoxX AK40_5007 PF00892 EamA-like transporter family AK40_5008 PF01037 Lrp/AsnC ligand binding domain AK40_5010 PF00893 Small Multidrug Resistance protein AK40_5011 PF00893 Small Multidrug Resistance protein AK40_5012 PF00440 Bacterial regulatory proteins, tetR family AK40_5012 PF17934 Tetracyclin repressor-like, C-terminal domain AK40_5013 PF07690 Major Facilitator Superfamily AK40_5015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_5015 PF12793 Sugar transport-related sRNA regulator N-term AK40_5016 PF07690 Major Facilitator Superfamily AK40_5018 PF01965 DJ-1/PfpI family AK40_5019 PF00199 Catalase AK40_5019 PF06628 Catalase-related immune-responsive AK40_5019 PF18011 C-terminal domain found in long catalases AK40_502 PF13520 Amino acid permease AK40_5021 PF13520 Amino acid permease AK40_5022 PF01177 Asp/Glu/Hydantoin racemase AK40_5024 PF00171 Aldehyde dehydrogenase family AK40_5025 PF00005 ABC transporter AK40_5025 PF00664 ABC transporter transmembrane region AK40_5026 PF00664 ABC transporter transmembrane region AK40_5026 PF00005 ABC transporter AK40_5027 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK40_5028 PF00528 Binding-protein-dependent transport system inner membrane component AK40_5029 PF00005 ABC transporter AK40_5030 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK40_5032 PF14398 YheC/D like ATP-grasp AK40_5034 PF04286 Protein of unknown function (DUF445) AK40_5035 PF06133 Control of competence regulator ComK, YlbF/YmcA AK40_5038 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_5038 PF00205 Thiamine pyrophosphate enzyme, central domain AK40_5038 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_5039 PF03306 Alpha-acetolactate decarboxylase AK40_504 PF05791 Bacillus haemolytic enterotoxin (HBL) AK40_5040 PF02245 Methylpurine-DNA glycosylase (MPG) AK40_5043 PF01510 N-acetylmuramoyl-L-alanine amidase AK40_5043 PF01471 Putative peptidoglycan binding domain AK40_5044 PF04055 Radical SAM superfamily AK40_5045 PF00501 AMP-binding enzyme AK40_5045 PF13193 AMP-binding enzyme C-terminal domain AK40_5047 PF01740 STAS domain AK40_5047 PF00916 Sulfate permease family AK40_505 PF05791 Bacillus haemolytic enterotoxin (HBL) AK40_5052 PF07516 SecA Wing and Scaffold domain AK40_5052 PF01043 SecA preprotein cross-linking domain AK40_5052 PF07517 SecA DEAD-like domain AK40_5053 PF01943 Polysaccharide biosynthesis protein AK40_5053 PF14667 Polysaccharide biosynthesis C-terminal domain AK40_5055 PF00395 S-layer homology domain AK40_5056 PF00395 S-layer homology domain AK40_5058 PF03062 MBOAT, membrane-bound O-acyltransferase family AK40_5060 PF00378 Enoyl-CoA hydratase/isomerase AK40_5065 PF05343 M42 glutamyl aminopeptidase AK40_5066 PF01520 N-acetylmuramoyl-L-alanine amidase AK40_5066 PF00395 S-layer homology domain AK40_5068 PF01522 Polysaccharide deacetylase AK40_5068 PF13739 Deacetylase PdaC AK40_5068 PF11738 Protein of unknown function (DUF3298) AK40_5069 PF12833 Helix-turn-helix domain AK40_5069 PF06445 GyrI-like small molecule binding domain AK40_507 PF00005 ABC transporter AK40_5070 PF11208 Protein of unknown function (DUF2992) AK40_5072 PF02899 Phage integrase, N-terminal SAM-like domain AK40_5072 PF00589 Phage integrase family AK40_5075 PF11121 Protein of unknown function (DUF2639) AK40_5076 PF05544 Proline racemase AK40_5077 PF02423 Ornithine cyclodeaminase/mu-crystallin family AK40_5078 PF18593 CdiI immunity protein AK40_5082 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_5083 PF00528 Binding-protein-dependent transport system inner membrane component AK40_5084 PF00528 Binding-protein-dependent transport system inner membrane component AK40_5084 PF12911 N-terminal TM domain of oligopeptide transport permease C AK40_5085 PF00005 ABC transporter AK40_5085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_5086 PF00005 ABC transporter AK40_5086 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_5088 PF01926 50S ribosome-binding GTPase AK40_5088 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AK40_5092 PF00271 Helicase conserved C-terminal domain AK40_5092 PF04851 Type III restriction enzyme, res subunit AK40_5092 PF02151 UvrB/uvrC motif AK40_5092 PF12344 Ultra-violet resistance protein B AK40_5092 PF17757 UvrB interaction domain AK40_5096 PF00083 Sugar (and other) transporter AK40_5097 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AK40_5097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_5098 PF12431 Transcriptional regulator AK40_5098 PF08279 HTH domain AK40_5098 PF00072 Response regulator receiver domain AK40_5099 PF03401 Tripartite tricarboxylate transporter family receptor AK40_51 PF04914 DltD protein AK40_511 PF00072 Response regulator receiver domain AK40_511 PF00486 Transcriptional regulatory protein, C terminal AK40_5110 PF00271 Helicase conserved C-terminal domain AK40_5110 PF00176 SNF2 family N-terminal domain AK40_5119 PF06445 GyrI-like small molecule binding domain AK40_5119 PF13411 MerR HTH family regulatory protein AK40_512 PF00512 His Kinase A (phospho-acceptor) domain AK40_512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_5122 PF03796 DnaB-like helicase C terminal domain AK40_5122 PF00772 DnaB-like helicase N terminal domain AK40_5125 PF01925 Sulfite exporter TauE/SafE AK40_5128 PF07690 Major Facilitator Superfamily AK40_513 PF04198 Putative sugar-binding domain AK40_514 PF01791 DeoC/LacD family aldolase AK40_5141 PF00550 Phosphopantetheine attachment site AK40_5141 PF07993 Male sterility protein AK40_5142 PF18665 Tetracyclin repressor-like, C-terminal domain AK40_5142 PF00440 Bacterial regulatory proteins, tetR family AK40_5145 PF01066 CDP-alcohol phosphatidyltransferase AK40_515 PF07662 Na+ dependent nucleoside transporter C-terminus AK40_515 PF01773 Na+ dependent nucleoside transporter N-terminus AK40_5151 PF02733 Dak1 domain AK40_5153 PF02733 Dak1 domain AK40_5154 PF02525 Flavodoxin-like fold AK40_5155 PF02082 Transcriptional regulator AK40_5156 PF02734 DAK2 domain AK40_5158 PF18801 response regulator aspartate phosphatase H, N terminal AK40_516 PF02885 Glycosyl transferase family, helical bundle domain AK40_516 PF00591 Glycosyl transferase family, a/b domain AK40_516 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AK40_5160 PF00672 HAMP domain AK40_5160 PF01966 HD domain AK40_5164 PF00395 S-layer homology domain AK40_5169 PF11181 Heat induced stress protein YflT AK40_517 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AK40_5170 PF05532 CsbD-like AK40_5173 PF01740 STAS domain AK40_5174 PF13581 Histidine kinase-like ATPase domain AK40_5175 PF04545 Sigma-70, region 4 AK40_5175 PF04542 Sigma-70 region 2 AK40_5175 PF04539 Sigma-70 region 3 AK40_5177 PF07228 Stage II sporulation protein E (SpoIIE) AK40_5177 PF13426 PAS domain AK40_5178 PF01739 CheR methyltransferase, SAM binding domain AK40_5178 PF03705 CheR methyltransferase, all-alpha domain AK40_5179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_5179 PF00497 Bacterial extracellular solute-binding proteins, family 3 AK40_5179 PF00072 Response regulator receiver domain AK40_5179 PF01627 Hpt domain AK40_5179 PF00512 His Kinase A (phospho-acceptor) domain AK40_518 PF05979 Bacterial protein of unknown function (DUF896) AK40_5184 PF01906 Putative heavy-metal-binding AK40_5186 PF00107 Zinc-binding dehydrogenase AK40_5186 PF08240 Alcohol dehydrogenase GroES-like domain AK40_5189 PF11121 Protein of unknown function (DUF2639) AK40_5192 PF00149 Calcineurin-like phosphoesterase AK40_5193 PF13514 AAA domain AK40_5194 PF01966 HD domain AK40_5194 PF01336 OB-fold nucleic acid binding domain AK40_5199 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_52 PF00550 Phosphopantetheine attachment site AK40_5200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_5201 PF18801 response regulator aspartate phosphatase H, N terminal AK40_5201 PF17874 MalT-like TPR region AK40_5203 PF00561 alpha/beta hydrolase fold AK40_5203 PF08386 TAP-like protein AK40_5207 PF04309 Glycerol-3-phosphate responsive antiterminator AK40_5208 PF00230 Major intrinsic protein AK40_5209 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK40_5209 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK40_5210 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AK40_5210 PF01266 FAD dependent oxidoreductase AK40_5215 PF04542 Sigma-70 region 2 AK40_5215 PF08281 Sigma-70, region 4 AK40_522 PF00557 Metallopeptidase family M24 AK40_522 PF05195 Aminopeptidase P, N-terminal domain AK40_5220 PF07690 Major Facilitator Superfamily AK40_5221 PF07690 Major Facilitator Superfamily AK40_5223 PF13538 UvrD-like helicase C-terminal domain AK40_5227 PF01047 MarR family AK40_5228 PF12732 YtxH-like protein AK40_5229 PF01230 HIT domain AK40_523 PF07732 Multicopper oxidase AK40_523 PF07731 Multicopper oxidase AK40_523 PF00394 Multicopper oxidase AK40_5230 PF00005 ABC transporter AK40_5231 PF05975 Bacterial ABC transporter protein EcsB AK40_5232 PF12787 EcsC protein family AK40_5234 PF17934 Tetracyclin repressor-like, C-terminal domain AK40_5234 PF00440 Bacterial regulatory proteins, tetR family AK40_5236 PF03703 Bacterial PH domain AK40_5237 PF03703 Bacterial PH domain AK40_524 PF01551 Peptidase family M23 AK40_5241 PF00440 Bacterial regulatory proteins, tetR family AK40_5245 PF03703 Bacterial PH domain AK40_5246 PF03703 Bacterial PH domain AK40_5247 PF03992 Antibiotic biosynthesis monooxygenase AK40_5248 PF00905 Penicillin binding protein transpeptidase domain AK40_5248 PF00912 Transglycosylase AK40_5249 PF01208 Uroporphyrinogen decarboxylase (URO-D) AK40_5257 PF03965 Penicillinase repressor AK40_5259 PF00440 Bacterial regulatory proteins, tetR family AK40_5259 PF17932 Tetracyclin repressor-like, C-terminal domain AK40_5264 PF00356 Bacterial regulatory proteins, lacI family AK40_5265 PF14149 YhfH-like protein AK40_5266 PF12706 Beta-lactamase superfamily domain AK40_5267 PF03099 Biotin/lipoate A/B protein ligase family AK40_5267 PF10437 Bacterial lipoate protein ligase C-terminus AK40_5269 PF00501 AMP-binding enzyme AK40_5269 PF13193 AMP-binding enzyme C-terminal domain AK40_5271 PF01520 N-acetylmuramoyl-L-alanine amidase AK40_5271 PF00395 S-layer homology domain AK40_5273 PF05593 RHS Repeat AK40_5280 PF00440 Bacterial regulatory proteins, tetR family AK40_5281 PF12146 Serine aminopeptidase, S33 AK40_5282 PF00149 Calcineurin-like phosphoesterase AK40_5284 PF01966 HD domain AK40_5286 PF04542 Sigma-70 region 2 AK40_5286 PF08281 Sigma-70, region 4 AK40_5287 PF06445 GyrI-like small molecule binding domain AK40_5287 PF12833 Helix-turn-helix domain AK40_5288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_5288 PF00512 His Kinase A (phospho-acceptor) domain AK40_5289 PF00486 Transcriptional regulatory protein, C terminal AK40_5289 PF00072 Response regulator receiver domain AK40_529 PF02525 Flavodoxin-like fold AK40_5293 PF16491 CAAX prenyl protease N-terminal, five membrane helices AK40_5293 PF01435 Peptidase family M48 AK40_5294 PF00892 EamA-like transporter family AK40_5295 PF00395 S-layer homology domain AK40_5295 PF00150 Cellulase (glycosyl hydrolase family 5) AK40_5295 PF03424 Carbohydrate binding domain (family 17/28) AK40_5297 PF00395 S-layer homology domain AK40_5298 PF01274 Malate synthase AK40_5299 PF00463 Isocitrate lyase family AK40_53 PF03062 MBOAT, membrane-bound O-acyltransferase family AK40_530 PF05525 Branched-chain amino acid transport protein AK40_5301 PF00313 'Cold-shock' DNA-binding domain AK40_5304 PF06338 ComK protein AK40_5306 PF09335 SNARE associated Golgi protein AK40_5307 PF10502 Signal peptidase, peptidase S26 AK40_5308 PF13361 UvrD-like helicase C-terminal domain AK40_5308 PF12705 PD-(D/E)XK nuclease superfamily AK40_5309 PF12705 PD-(D/E)XK nuclease superfamily AK40_5309 PF13361 UvrD-like helicase C-terminal domain AK40_5309 PF00580 UvrD/REP helicase N-terminal domain AK40_5311 PF10676 Spore germination protein gerPA/gerPF AK40_5312 PF10970 Spore germination protein GerPE AK40_5314 PF10737 Spore germination protein GerPC AK40_5315 PF10803 Spore germination GerPB AK40_5316 PF10676 Spore germination protein gerPA/gerPF AK40_5317 PF09388 Spo0E like sporulation regulatory protein AK40_5318 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK40_532 PF13115 YtkA-like AK40_532 PF04234 CopC domain AK40_532 PF05425 Copper resistance protein D AK40_5320 PF00202 Aminotransferase class-III AK40_5321 PF07457 Protein of unknown function (DUF1516) AK40_5323 PF00733 Asparagine synthase AK40_5323 PF13537 Glutamine amidotransferase domain AK40_5325 PF00199 Catalase AK40_5325 PF06628 Catalase-related immune-responsive AK40_5326 PF00909 Ammonium Transporter Family AK40_5327 PF00128 Alpha amylase, catalytic domain AK40_5329 PF04461 Protein of unknown function (DUF520) AK40_533 PF07987 Domain of unkown function (DUF1775) AK40_5330 PF13509 S1 domain AK40_5330 PF17783 CvfB-like winged helix domain AK40_5332 PF00639 PPIC-type PPIASE domain AK40_5334 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_5334 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_5335 PF12758 Protein of unknown function (DUF3813) AK40_5338 PF14168 YjzC-like protein AK40_5339 PF17871 AAA lid domain AK40_5339 PF02861 Clp amino terminal domain, pathogenicity island component AK40_5339 PF10431 C-terminal, D2-small domain, of ClpB protein AK40_5339 PF00004 ATPase family associated with various cellular activities (AAA) AK40_5339 PF07724 AAA domain (Cdc48 subfamily) AK40_5343 PF10815 ComZ AK40_5344 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK40_5344 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK40_5345 PF02801 Beta-ketoacyl synthase, C-terminal domain AK40_5345 PF00109 Beta-ketoacyl synthase, N-terminal domain AK40_5346 PF10026 Predicted Zn-dependent protease (DUF2268) AK40_5347 PF12227 Protein of unknown function (DUF3603) AK40_5348 PF00579 tRNA synthetases class I (W and Y) AK40_535 PF00892 EamA-like transporter family AK40_5350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_5351 PF00528 Binding-protein-dependent transport system inner membrane component AK40_5352 PF00528 Binding-protein-dependent transport system inner membrane component AK40_5352 PF12911 N-terminal TM domain of oligopeptide transport permease C AK40_5353 PF00005 ABC transporter AK40_5353 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_5354 PF00005 ABC transporter AK40_5354 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AK40_5355 PF01554 MatE AK40_5356 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_5358 PF03960 ArsC family AK40_5359 PF03741 Integral membrane protein TerC family AK40_536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_536 PF03466 LysR substrate binding domain AK40_5360 PF05389 Negative regulator of genetic competence (MecA) AK40_5361 PF13091 PLD-like domain AK40_5361 PF13396 Phospholipase_D-nuclease N-terminal AK40_5363 PF01432 Peptidase family M3 AK40_5363 PF08439 Oligopeptidase F AK40_5366 PF01152 Bacterial-like globin AK40_5367 PF01928 CYTH domain AK40_5369 PF04607 Region found in RelA / SpoT proteins AK40_537 PF02082 Transcriptional regulator AK40_5370 PF01513 ATP-NAD kinase AK40_5371 PF00849 RNA pseudouridylate synthase AK40_5373 PF00149 Calcineurin-like phosphoesterase AK40_5374 PF01098 Cell cycle protein AK40_5375 PF00535 Glycosyl transferase family 2 AK40_5376 PF08241 Methyltransferase domain AK40_5377 PF05711 Macrocin-O-methyltransferase (TylF) AK40_5379 PF13181 Tetratricopeptide repeat AK40_5379 PF00535 Glycosyl transferase family 2 AK40_538 PF01323 DSBA-like thioredoxin domain AK40_5383 PF00483 Nucleotidyl transferase AK40_5384 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AK40_5385 PF16363 GDP-mannose 4,6 dehydratase AK40_5386 PF04321 RmlD substrate binding domain AK40_539 PF00881 Nitroreductase family AK40_5390 PF07098 Protein of unknown function (DUF1360) AK40_5393 PF00580 UvrD/REP helicase N-terminal domain AK40_5393 PF13361 UvrD-like helicase C-terminal domain AK40_5394 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AK40_5394 PF01348 Type II intron maturase AK40_5395 PF00580 UvrD/REP helicase N-terminal domain AK40_5395 PF13361 UvrD-like helicase C-terminal domain AK40_5396 PF13673 Acetyltransferase (GNAT) domain AK40_5398 PF00756 Putative esterase AK40_54 PF00501 AMP-binding enzyme AK40_54 PF13193 AMP-binding enzyme C-terminal domain AK40_5401 PF02368 Bacterial Ig-like domain (group 2) AK40_5402 PF00474 Sodium:solute symporter family AK40_5404 PF02885 Glycosyl transferase family, helical bundle domain AK40_5404 PF00591 Glycosyl transferase family, a/b domain AK40_5404 PF00117 Glutamine amidotransferase class-I AK40_5405 PF00591 Glycosyl transferase family, a/b domain AK40_5405 PF02885 Glycosyl transferase family, helical bundle domain AK40_5406 PF00218 Indole-3-glycerol phosphate synthase AK40_5407 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AK40_5408 PF00291 Pyridoxal-phosphate dependent enzyme AK40_5409 PF00290 Tryptophan synthase alpha chain AK40_541 PF01425 Amidase AK40_5411 PF02652 L-lactate permease AK40_5412 PF10042 Uncharacterized conserved protein (DUF2278) AK40_5416 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_5416 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AK40_542 PF01594 AI-2E family transporter AK40_5421 PF00364 Biotin-requiring enzyme AK40_5421 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AK40_5421 PF02817 e3 binding domain AK40_5422 PF02779 Transketolase, pyrimidine binding domain AK40_5422 PF00676 Dehydrogenase E1 component AK40_5422 PF16870 2-oxoglutarate dehydrogenase C-terminal AK40_5423 PF01381 Helix-turn-helix AK40_543 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AK40_543 PF00056 lactate/malate dehydrogenase, NAD binding domain AK40_544 PF01593 Flavin containing amine oxidoreductase AK40_5447 PF00202 Aminotransferase class-III AK40_545 PF07683 Cobalamin synthesis protein cobW C-terminal domain AK40_545 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK40_5450 PF13732 Domain of unknown function (DUF4162) AK40_5450 PF00005 ABC transporter AK40_5454 PF13649 Methyltransferase domain AK40_5456 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_5456 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_5458 PF12389 Camelysin metallo-endopeptidase AK40_5460 PF12389 Camelysin metallo-endopeptidase AK40_5461 PF01381 Helix-turn-helix AK40_5461 PF08671 Anti-repressor SinI AK40_5462 PF05547 Immune inhibitor A peptidase M6 AK40_5463 PF00171 Aldehyde dehydrogenase family AK40_5464 PF08402 TOBE domain AK40_5464 PF00005 ABC transporter AK40_5465 PF00528 Binding-protein-dependent transport system inner membrane component AK40_5466 PF00528 Binding-protein-dependent transport system inner membrane component AK40_5467 PF13416 Bacterial extracellular solute-binding protein AK40_5469 PF03176 MMPL family AK40_5471 PF00849 RNA pseudouridylate synthase AK40_5471 PF01479 S4 domain AK40_5473 PF00188 Cysteine-rich secretory protein family AK40_5474 PF02754 Cysteine-rich domain AK40_5474 PF13183 4Fe-4S dicluster domain AK40_5475 PF02913 FAD linked oxidases, C-terminal domain AK40_5475 PF01565 FAD binding domain AK40_5476 PF17853 GGDEF-like domain AK40_5476 PF13556 PucR C-terminal helix-turn-helix domain AK40_5476 PF05651 Putative sugar diacid recognition AK40_5478 PF00486 Transcriptional regulatory protein, C terminal AK40_5478 PF00072 Response regulator receiver domain AK40_5479 PF18698 Histidine kinase sensor domain AK40_5479 PF00672 HAMP domain AK40_5479 PF00512 His Kinase A (phospho-acceptor) domain AK40_5479 PF00989 PAS fold AK40_5479 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_548 PF00501 AMP-binding enzyme AK40_548 PF13193 AMP-binding enzyme C-terminal domain AK40_5480 PF07729 FCD domain AK40_5480 PF00392 Bacterial regulatory proteins, gntR family AK40_5481 PF02754 Cysteine-rich domain AK40_5482 PF11870 Domain of unknown function (DUF3390) AK40_5482 PF02589 LUD domain AK40_5482 PF13183 4Fe-4S dicluster domain AK40_5483 PF02589 LUD domain AK40_5484 PF01478 Type IV leader peptidase family AK40_5484 PF06750 Bacterial Peptidase A24 N-terminal domain AK40_5486 PF01226 Formate/nitrite transporter AK40_5487 PF03741 Integral membrane protein TerC family AK40_5488 PF02386 Cation transport protein AK40_5489 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK40_549 PF01575 MaoC like domain AK40_5490 PF01575 MaoC like domain AK40_5495 PF00561 alpha/beta hydrolase fold AK40_5498 PF05698 Bacterial trigger factor protein (TF) C-terminus AK40_550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AK40_550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AK40_5501 PF00589 Phage integrase family AK40_5501 PF02899 Phage integrase, N-terminal SAM-like domain AK40_5510 PF07319 Primosomal protein DnaI N-terminus AK40_5510 PF01695 IstB-like ATP binding protein AK40_5511 PF02810 SEC-C motif AK40_5511 PF05225 helix-turn-helix, Psq domain AK40_5512 PF01022 Bacterial regulatory protein, arsR family AK40_552 PF12399 Branched-chain amino acid ATP-binding cassette transporter AK40_552 PF00005 ABC transporter AK40_553 PF00005 ABC transporter AK40_5530 PF00004 ATPase family associated with various cellular activities (AAA) AK40_5530 PF17866 AAA lid domain AK40_5534 PF01476 LysM domain AK40_5534 PF00877 NlpC/P60 family AK40_5536 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AK40_5536 PF00877 NlpC/P60 family AK40_5539 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AK40_554 PF02653 Branched-chain amino acid transport system / permease component AK40_5550 PF02768 DNA polymerase III beta subunit, C-terminal domain AK40_5550 PF02767 DNA polymerase III beta subunit, central domain AK40_5550 PF00712 DNA polymerase III beta subunit, N-terminal domain AK40_556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AK40_556 PF03466 LysR substrate binding domain AK40_5563 PF00437 Type II/IV secretion system protein AK40_5576 PF00772 DnaB-like helicase N terminal domain AK40_5576 PF03796 DnaB-like helicase C terminal domain AK40_56 PF01546 Peptidase family M20/M25/M40 AK40_56 PF07687 Peptidase dimerisation domain AK40_560 PF01047 MarR family AK40_5600 PF06452 Carbohydrate family 9 binding domain-like AK40_5600 PF00395 S-layer homology domain AK40_5600 PF00331 Glycosyl hydrolase family 10 AK40_5600 PF02018 Carbohydrate binding domain AK40_5603 PF17633 Family of unknown function (DUF5514) AK40_562 PF01654 Cytochrome bd terminal oxidase subunit I AK40_5628 PF09397 Ftsk gamma domain AK40_5628 PF17854 FtsK alpha domain AK40_5628 PF01580 FtsK/SpoIIIE family AK40_5628 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AK40_563 PF02322 Cytochrome bd terminal oxidase subunit II AK40_564 PF00005 ABC transporter AK40_564 PF00664 ABC transporter transmembrane region AK40_565 PF00005 ABC transporter AK40_565 PF00664 ABC transporter transmembrane region AK40_5651 PF07972 NrdI Flavodoxin like AK40_5661 PF00817 impB/mucB/samB family AK40_5661 PF11798 IMS family HHH motif AK40_5661 PF11799 impB/mucB/samB family C-terminal domain AK40_5667 PF00589 Phage integrase family AK40_5667 PF02899 Phage integrase, N-terminal SAM-like domain AK40_5668 PF00589 Phage integrase family AK40_5668 PF02899 Phage integrase, N-terminal SAM-like domain AK40_5673 PF00072 Response regulator receiver domain AK40_5673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_5673 PF00512 His Kinase A (phospho-acceptor) domain AK40_5673 PF09308 LuxQ, periplasmic AK40_5674 PF00072 Response regulator receiver domain AK40_5674 PF00196 Bacterial regulatory proteins, luxR family AK40_568 PF02016 LD-carboxypeptidase N-terminal domain AK40_568 PF17676 LD-carboxypeptidase C-terminal domain AK40_5681 PF12169 DNA polymerase III subunits gamma and tau domain III AK40_569 PF07943 Penicillin-binding protein 5, C-terminal domain AK40_569 PF00768 D-alanyl-D-alanine carboxypeptidase AK40_5690 PF00589 Phage integrase family AK40_5691 PF00589 Phage integrase family AK40_5691 PF02899 Phage integrase, N-terminal SAM-like domain AK40_5697 PF10502 Signal peptidase, peptidase S26 AK40_5705 PF01522 Polysaccharide deacetylase AK40_5705 PF13739 Deacetylase PdaC AK40_5705 PF11738 Protein of unknown function (DUF3298) AK40_5706 PF06445 GyrI-like small molecule binding domain AK40_5706 PF12833 Helix-turn-helix domain AK40_5708 PF11208 Protein of unknown function (DUF2992) AK40_571 PF00877 NlpC/P60 family AK40_571 PF01476 LysM domain AK40_5713 PF00589 Phage integrase family AK40_5713 PF02899 Phage integrase, N-terminal SAM-like domain AK40_5720 PF10502 Signal peptidase, peptidase S26 AK40_5721 PF04545 Sigma-70, region 4 AK40_5721 PF04539 Sigma-70 region 3 AK40_5721 PF03979 Sigma-70 factor, region 1.1 AK40_5721 PF00140 Sigma-70 factor, region 1.2 AK40_5721 PF04542 Sigma-70 region 2 AK40_573 PF00664 ABC transporter transmembrane region AK40_573 PF00005 ABC transporter AK40_574 PF00486 Transcriptional regulatory protein, C terminal AK40_574 PF00072 Response regulator receiver domain AK40_5741 PF01022 Bacterial regulatory protein, arsR family AK40_5744 PF00589 Phage integrase family AK40_575 PF00512 His Kinase A (phospho-acceptor) domain AK40_575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_575 PF00672 HAMP domain AK40_5753 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK40_5753 PF18277 AbrB C-terminal domain AK40_5755 PF17209 Hfq protein AK40_5766 PF00144 Beta-lactamase AK40_577 PF00106 short chain dehydrogenase AK40_5770 PF13419 Haloacid dehalogenase-like hydrolase AK40_5771 PF09297 NADH pyrophosphatase zinc ribbon domain AK40_5771 PF00293 NUDIX domain AK40_5772 PF10706 Aminoglycoside-2''-adenylyltransferase AK40_5774 PF00239 Resolvase, N terminal domain AK40_5774 PF02796 Helix-turn-helix domain of resolvase AK40_5775 PF13700 Domain of unknown function (DUF4158) AK40_5775 PF01526 Tn3 transposase DDE domain AK40_5784 PF07516 SecA Wing and Scaffold domain AK40_5784 PF02810 SEC-C motif AK40_5784 PF07517 SecA DEAD-like domain AK40_5784 PF01043 SecA preprotein cross-linking domain AK40_579 PF04439 Streptomycin adenylyltransferase AK40_5792 PF01043 SecA preprotein cross-linking domain AK40_5792 PF07517 SecA DEAD-like domain AK40_5792 PF02810 SEC-C motif AK40_5792 PF07516 SecA Wing and Scaffold domain AK40_5793 PF13361 UvrD-like helicase C-terminal domain AK40_5793 PF00580 UvrD/REP helicase N-terminal domain AK40_5794 PF01348 Type II intron maturase AK40_5794 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AK40_5795 PF13361 UvrD-like helicase C-terminal domain AK40_5795 PF00580 UvrD/REP helicase N-terminal domain AK40_5796 PF09115 DNA polymerase III, delta subunit, C terminal AK40_58 PF00258 Flavodoxin AK40_580 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AK40_580 PF01522 Polysaccharide deacetylase AK40_5800 PF00854 POT family AK40_5803 PF03412 Peptidase C39 family AK40_5803 PF00005 ABC transporter AK40_5803 PF00664 ABC transporter transmembrane region AK40_5816 PF01494 FAD binding domain AK40_5825 PF00145 C-5 cytosine-specific DNA methylase AK40_5825 PF13411 MerR HTH family regulatory protein AK40_5827 PF05791 Bacillus haemolytic enterotoxin (HBL) AK40_5830 PF01022 Bacterial regulatory protein, arsR family AK40_5832 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AK40_5832 PF09156 Anthrax toxin lethal factor, middle domain AK40_5834 PF01522 Polysaccharide deacetylase AK40_584 PF03447 Homoserine dehydrogenase, NAD binding domain AK40_584 PF01842 ACT domain AK40_584 PF00742 Homoserine dehydrogenase AK40_5841 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain AK40_5841 PF07691 PA14 domain AK40_5841 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 AK40_5841 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 AK40_5844 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AK40_5844 PF03496 ADP-ribosyltransferase exoenzyme AK40_5846 PF01609 Transposase DDE domain AK40_5847 PF01609 Transposase DDE domain AK40_585 PF00291 Pyridoxal-phosphate dependent enzyme AK40_5850 PF08280 M protein trans-acting positive regulator (MGA) HTH domain AK40_5850 PF00874 PRD domain AK40_5850 PF05043 Mga helix-turn-helix domain AK40_5853 PF12323 Helix-turn-helix domain AK40_5853 PF07282 Putative transposase DNA-binding domain AK40_5853 PF01385 Probable transposase AK40_5856 PF01051 Initiator Replication protein AK40_5857 PF12323 Helix-turn-helix domain AK40_5857 PF01385 Probable transposase AK40_5857 PF07282 Putative transposase DNA-binding domain AK40_5859 PF00512 His Kinase A (phospho-acceptor) domain AK40_5859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_5859 PF00989 PAS fold AK40_5859 PF16736 Single Cache-like AK40_586 PF08544 GHMP kinases C terminal AK40_586 PF00288 GHMP kinases N terminal domain AK40_5860 PF00486 Transcriptional regulatory protein, C terminal AK40_5860 PF00072 Response regulator receiver domain AK40_5863 PF03496 ADP-ribosyltransferase exoenzyme AK40_5865 PF12697 Alpha/beta hydrolase family AK40_5872 PF18801 response regulator aspartate phosphatase H, N terminal AK40_5874 PF17209 Hfq protein AK40_5875 PF01022 Bacterial regulatory protein, arsR family AK40_5876 PF02600 Disulfide bond formation protein DsbB AK40_5879 PF00565 Staphylococcal nuclease homologue AK40_5884 PF08378 Nuclease-related domain AK40_589 PF03816 Cell envelope-related transcriptional attenuator domain AK40_5897 PF07693 KAP family P-loop domain AK40_5906 PF05922 Peptidase inhibitor I9 AK40_5906 PF00082 Subtilase family AK40_5907 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 AK40_5907 PF09000 Cytotoxic AK40_5907 PF03515 Colicin-like bacteriocin tRNase domain AK40_591 PF00486 Transcriptional regulatory protein, C terminal AK40_591 PF00072 Response regulator receiver domain AK40_592 PF00989 PAS fold AK40_592 PF00512 His Kinase A (phospho-acceptor) domain AK40_592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_592 PF16736 Single Cache-like AK40_5922 PF04098 Rad52/22 family double-strand break repair protein AK40_593 PF01522 Polysaccharide deacetylase AK40_5934 PF01580 FtsK/SpoIIIE family AK40_5934 PF09397 Ftsk gamma domain AK40_5934 PF17854 FtsK alpha domain AK40_5934 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AK40_595 PF02308 MgtC family AK40_5951 PF00437 Type II/IV secretion system protein AK40_596 PF00583 Acetyltransferase (GNAT) family AK40_5964 PF03123 CAT RNA binding domain AK40_5964 PF00874 PRD domain AK40_5965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AK40_5965 PF02378 Phosphotransferase system, EIIC AK40_5965 PF00367 phosphotransferase system, EIIB AK40_5966 PF00232 Glycosyl hydrolase family 1 AK40_597 PF06276 Ferric iron reductase FhuF-like transporter AK40_597 PF04183 IucA / IucC family AK40_598 PF06276 Ferric iron reductase FhuF-like transporter AK40_598 PF04183 IucA / IucC family AK40_5980 PF00395 S-layer homology domain AK40_5980 PF00150 Cellulase (glycosyl hydrolase family 5) AK40_5980 PF03424 Carbohydrate binding domain (family 17/28) AK40_5989 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) AK40_599 PF00501 AMP-binding enzyme AK40_599 PF13193 AMP-binding enzyme C-terminal domain AK40_5992 PF04235 Protein of unknown function (DUF418) AK40_5994 PF00303 Thymidylate synthase AK40_5999 PF00817 impB/mucB/samB family AK40_5999 PF11799 impB/mucB/samB family C-terminal domain AK40_5999 PF11798 IMS family HHH motif AK40_6 PF00528 Binding-protein-dependent transport system inner membrane component AK40_6000 PF01022 Bacterial regulatory protein, arsR family AK40_6001 PF08245 Mur ligase middle domain AK40_6002 PF14102 Capsule biosynthesis CapC AK40_6003 PF09587 Bacterial capsule synthesis protein PGA_cap AK40_6009 PF08280 M protein trans-acting positive regulator (MGA) HTH domain AK40_6009 PF05043 Mga helix-turn-helix domain AK40_6011 PF00589 Phage integrase family AK40_6011 PF02899 Phage integrase, N-terminal SAM-like domain AK40_6016 PF04740 LXG domain of WXG superfamily AK40_6016 PF14436 Bacterial EndoU nuclease AK40_6019 PF00117 Glutamine amidotransferase class-I AK40_602 PF01261 Xylose isomerase-like TIM barrel AK40_6020 PF00392 Bacterial regulatory proteins, gntR family AK40_6020 PF00155 Aminotransferase class I and II AK40_6021 PF05163 DinB family AK40_6024 PF01022 Bacterial regulatory protein, arsR family AK40_6025 PF00395 S-layer homology domain AK40_6025 PF01520 N-acetylmuramoyl-L-alanine amidase AK40_6026 PF01520 N-acetylmuramoyl-L-alanine amidase AK40_6026 PF00395 S-layer homology domain AK40_6027 PF01381 Helix-turn-helix AK40_6029 PF01522 Polysaccharide deacetylase AK40_603 PF00269 Small, acid-soluble spore proteins, alpha/beta type AK40_6030 PF00672 HAMP domain AK40_6030 PF02743 Cache domain AK40_6030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_6031 PF03965 Penicillinase repressor AK40_6034 PF01381 Helix-turn-helix AK40_6037 PF00005 ABC transporter AK40_604 PF07690 Major Facilitator Superfamily AK40_6040 PF03793 PASTA domain AK40_6040 PF00069 Protein kinase domain AK40_6041 PF13495 Phage integrase, N-terminal SAM-like domain AK40_6041 PF00589 Phage integrase family AK40_6044 PF03497 Anthrax toxin LF subunit AK40_6044 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain AK40_605 PF01810 LysE type translocator AK40_6050 PF02796 Helix-turn-helix domain of resolvase AK40_6050 PF00239 Resolvase, N terminal domain AK40_6054 PF11799 impB/mucB/samB family C-terminal domain AK40_6054 PF00817 impB/mucB/samB family AK40_6054 PF11798 IMS family HHH motif AK40_6057 PF17443 Uncharacterized protein pXO2-72 AK40_606 PF00155 Aminotransferase class I and II AK40_606 PF00392 Bacterial regulatory proteins, gntR family AK40_6062 PF13152 Protein of unknown function (DUF3967) AK40_6062 PF13411 MerR HTH family regulatory protein AK40_6065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_6071 PF01022 Bacterial regulatory protein, arsR family AK40_6076 PF13614 AAA domain AK40_6077 PF08708 Primase C terminal 1 (PriCT-1) AK40_608 PF01734 Patatin-like phospholipase AK40_6081 PF17362 Family of unknown function AK40_6085 PF17631 Family of unknown function (DUF5512) AK40_61 PF01636 Phosphotransferase enzyme family AK40_6103 PF00437 Type II/IV secretion system protein AK40_6109 PF04956 TrbC/VIRB2 family AK40_6111 PF12696 TraM recognition site of TraD and TraG AK40_6118 PF00877 NlpC/P60 family AK40_6121 PF17632 Family of unknown function (DUF5513) AK40_6126 PF17633 Family of unknown function (DUF5514) AK40_6127 PF18840 Large polyvalent protein associated domain 25 AK40_6128 PF18840 Large polyvalent protein associated domain 25 AK40_613 PF13344 Haloacid dehalogenase-like hydrolase AK40_613 PF00293 NUDIX domain AK40_6132 PF13154 Protein of unknown function (DUF3991) AK40_6136 PF01751 Toprim domain AK40_6136 PF01131 DNA topoisomerase AK40_614 PF02540 NAD synthase AK40_6148 PF05065 Phage capsid family AK40_6149 PF14550 Putative phage serine protease XkdF AK40_615 PF02687 FtsX-like permease family AK40_6150 PF04233 Phage Mu protein F like protein AK40_6151 PF04860 Phage portal protein AK40_6155 PF10668 Phage terminase small subunit AK40_6158 PF00239 Resolvase, N terminal domain AK40_6158 PF02796 Helix-turn-helix domain of resolvase AK40_616 PF18277 AbrB C-terminal domain AK40_616 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AK40_6164 PF03838 Recombination protein U AK40_617 PF00082 Subtilase family AK40_618 PF01022 Bacterial regulatory protein, arsR family AK40_6181 PF01695 IstB-like ATP binding protein AK40_619 PF00248 Aldo/keto reductase family AK40_6190 PF02498 BRO family, N-terminal domain AK40_6190 PF10548 P22AR C-terminal domain AK40_6192 PF01381 Helix-turn-helix AK40_620 PF07690 Major Facilitator Superfamily AK40_6205 PF13614 AAA domain AK40_6211 PF13411 MerR HTH family regulatory protein AK40_6211 PF13152 Protein of unknown function (DUF3967) AK40_6213 PF00817 impB/mucB/samB family AK40_6213 PF11799 impB/mucB/samB family C-terminal domain AK40_6213 PF11798 IMS family HHH motif AK40_6219 PF00589 Phage integrase family AK40_6219 PF02899 Phage integrase, N-terminal SAM-like domain AK40_6220 PF02899 Phage integrase, N-terminal SAM-like domain AK40_6220 PF00589 Phage integrase family AK40_6225 PF05105 Bacteriophage holin family AK40_6235 PF04883 Bacteriophage HK97-gp10, putative tail-component AK40_6238 PF10668 Phage terminase small subunit AK40_624 PF03193 RsgA GTPase AK40_6243 PF03838 Recombination protein U AK40_625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AK40_625 PF00672 HAMP domain AK40_625 PF02743 Cache domain AK40_6262 PF00772 DnaB-like helicase N terminal domain AK40_6262 PF03796 DnaB-like helicase C terminal domain AK40_6271 PF10548 P22AR C-terminal domain AK40_6271 PF08346 AntA/AntB antirepressor AK40_6287 PF05105 Bacteriophage holin family AK40_629 PF00210 Ferritin-like domain AK40_6307 PF01435 Peptidase family M48 AK40_6312 PF18801 response regulator aspartate phosphatase H, N terminal AK40_6314 PF03432 Relaxase/Mobilisation nuclease domain AK40_632 PF00296 Luciferase-like monooxygenase AK40_634 PF01593 Flavin containing amine oxidoreductase AK40_636 PF00248 Aldo/keto reductase family AK40_637 PF07683 Cobalamin synthesis protein cobW C-terminal domain AK40_637 PF02492 CobW/HypB/UreG, nucleotide-binding domain AK40_638 PF00583 Acetyltransferase (GNAT) family AK40_641 PF04740 LXG domain of WXG superfamily AK40_641 PF14436 Bacterial EndoU nuclease AK40_642 PF01297 Zinc-uptake complex component A periplasmic AK40_642 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AK40_644 PF13460 NAD(P)H-binding AK40_645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AK40_646 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AK40_646 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AK40_648 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AK40_649 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_65 PF01554 MatE AK40_651 PF00300 Histidine phosphatase superfamily (branch 1) AK40_653 PF08757 CotH kinase protein AK40_654 PF00293 NUDIX domain AK40_655 PF09335 SNARE associated Golgi protein AK40_656 PF01943 Polysaccharide biosynthesis protein AK40_656 PF14667 Polysaccharide biosynthesis C-terminal domain AK40_658 PF03773 Predicted permease AK40_659 PF09323 Domain of unknown function (DUF1980) AK40_66 PF02673 Bacitracin resistance protein BacA AK40_660 PF03061 Thioesterase superfamily AK40_661 PF13396 Phospholipase_D-nuclease N-terminal AK40_661 PF13091 PLD-like domain AK40_664 PF13460 NAD(P)H-binding AK40_665 PF04306 Protein of unknown function (DUF456) AK40_666 PF00571 CBS domain AK40_666 PF01595 Cyclin M transmembrane N-terminal domain AK40_666 PF03471 Transporter associated domain AK40_669 PF05525 Branched-chain amino acid transport protein AK40_670 PF01588 Putative tRNA binding domain AK40_673 PF07454 Stage II sporulation protein P (SpoIIP) AK40_675 PF02557 D-alanyl-D-alanine carboxypeptidase AK40_677 PF01425 Amidase AK40_678 PF07690 Major Facilitator Superfamily AK40_680 PF01145 SPFH domain / Band 7 family AK40_681 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AK40_681 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AK40_683 PF06574 FAD synthetase AK40_684 PF06052 3-hydroxyanthranilic acid dioxygenase AK40_686 PF01042 Endoribonuclease L-PSP AK40_687 PF00171 Aldehyde dehydrogenase family AK40_688 PF01557 Fumarylacetoacetate (FAA) hydrolase family AK40_689 PF01118 Semialdehyde dehydrogenase, NAD binding domain AK40_689 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AK40_69 PF01047 MarR family AK40_690 PF00682 HMGL-like AK40_690 PF07836 DmpG-like communication domain AK40_692 PF01361 Tautomerase enzyme AK40_693 PF00300 Histidine phosphatase superfamily (branch 1) AK40_696 PF00842 Alanine racemase, C-terminal domain AK40_696 PF01168 Alanine racemase, N-terminal domain AK40_7 PF13419 Haloacid dehalogenase-like hydrolase AK40_700 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AK40_701 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AK40_701 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AK40_702 PF00392 Bacterial regulatory proteins, gntR family AK40_702 PF00155 Aminotransferase class I and II AK40_708 PF00583 Acetyltransferase (GNAT) family AK40_71 PF00375 Sodium:dicarboxylate symporter family AK40_72 PF02386 Cation transport protein AK40_724 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AK40_729 PF01209 ubiE/COQ5 methyltransferase family AK40_730 PF01268 Formate--tetrahydrofolate ligase AK40_732 PF00271 Helicase conserved C-terminal domain AK40_732 PF00270 DEAD/DEAH box helicase AK40_733 PF01261 Xylose isomerase-like TIM barrel AK40_734 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AK40_736 PF08240 Alcohol dehydrogenase GroES-like domain AK40_736 PF00107 Zinc-binding dehydrogenase AK40_737 PF08281 Sigma-70, region 4 AK40_737 PF04542 Sigma-70 region 2 AK40_74 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AK40_740 PF01613 Flavin reductase like domain AK40_740 PF00258 Flavodoxin AK40_742 PF00255 Glutathione peroxidase AK40_743 PF11992 Domain of unknown function (DUF3488) AK40_743 PF01841 Transglutaminase-like superfamily AK40_743 PF13559 Domain of unknown function (DUF4129) AK40_744 PF01882 Protein of unknown function DUF58 AK40_745 PF07726 ATPase family associated with various cellular activities (AAA) AK40_745 PF17863 AAA lid domain AK40_748 PF01568 Molydopterin dinucleotide binding domain AK40_748 PF00384 Molybdopterin oxidoreductase AK40_748 PF14710 Respiratory nitrate reductase alpha N-terminal AK40_749 PF13247 4Fe-4S dicluster domain AK40_749 PF14711 Respiratory nitrate reductase beta C-terminal AK40_750 PF02613 Nitrate reductase delta subunit AK40_751 PF02665 Nitrate reductase gamma subunit AK40_752 PF00027 Cyclic nucleotide-binding domain AK40_752 PF00325 Bacterial regulatory proteins, crp family AK40_753 PF04055 Radical SAM superfamily AK40_753 PF06463 Molybdenum Cofactor Synthesis C AK40_754 PF00899 ThiF family AK40_755 PF03454 MoeA C-terminal region (domain IV) AK40_755 PF03453 MoeA N-terminal region (domain I and II) AK40_755 PF00994 Probable molybdopterin binding domain AK40_756 PF02391 MoaE protein AK40_758 PF07690 Major Facilitator Superfamily AK40_76 PF03698 Uncharacterised protein family (UPF0180) AK40_761 PF01903 CbiX AK40_762 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AK40_763 PF00355 Rieske [2Fe-2S] domain AK40_764 PF18267 Rubredoxin NAD+ reductase C-terminal domain AK40_764 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AK40_764 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AK40_764 PF04324 BFD-like [2Fe-2S] binding domain AK40_764 PF07992 Pyridine nucleotide-disulphide oxidoreductase AK40_765 PF01814 Hemerythrin HHE cation binding domain AK40_765 PF04405 Domain of Unknown function (DUF542) AK40_772 PF04232 Stage V sporulation protein S (SpoVS) AK40_780 PF01510 N-acetylmuramoyl-L-alanine amidase AK40_782 PF18593 CdiI immunity protein AK40_785 PF01966 HD domain AK40_786 PF12848 ABC transporter AK40_786 PF00005 ABC transporter AK40_786 PF16326 ABC transporter C-terminal domain AK40_789 PF00436 Single-strand binding protein family AK40_79 PF01063 Amino-transferase class IV AK40_791 PF01494 FAD binding domain AK40_792 PF08712 Scaffold protein Nfu/NifU N terminal AK40_792 PF13769 Virulence factor AK40_794 PF06491 Disulphide isomerase AK40_795 PF04445 Putative SAM-dependent methyltransferase AK40_796 PF00750 tRNA synthetases class I (R) AK40_796 PF05746 DALR anticodon binding domain AK40_796 PF03485 Arginyl tRNA synthetase N terminal domain AK40_8 PF00266 Aminotransferase class-V AK40_80 PF00205 Thiamine pyrophosphate enzyme, central domain AK40_80 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AK40_80 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AK40_800 PF00133 tRNA synthetases class I (I, L, M and V) AK40_800 PF08264 Anticodon-binding domain of tRNA AK40_803 PF02875 Mur ligase family, glutamate ligase domain AK40_803 PF01225 Mur ligase family, catalytic domain AK40_803 PF08245 Mur ligase middle domain AK40_804 PF01336 OB-fold nucleic acid binding domain AK40_804 PF00152 tRNA synthetases class II (D, K and N) AK40_808 PF01580 FtsK/SpoIIIE family AK40_808 PF12538 DNA transporter AK40_81 PF10369 Small subunit of acetolactate synthase AK40_81 PF01842 ACT domain AK40_82 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AK40_82 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AK40_83 PF00682 HMGL-like AK40_83 PF08502 LeuA allosteric (dimerisation) domain AK40_831 PF02595 Glycerate kinase family AK40_832 PF00939 Sodium:sulfate symporter transmembrane region AK40_833 PF00072 Response regulator receiver domain AK40_833 PF00486 Transcriptional regulatory protein, C terminal AK40_834 PF00512 His Kinase A (phospho-acceptor) domain AK40_834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AK40_834 PF00672 HAMP domain AK40_837 PF00209 Sodium:neurotransmitter symporter family AK40_84 PF00180 Isocitrate/isopropylmalate dehydrogenase AK40_840 PF10997 Alternate to MurJ AK40_841 PF13419 Haloacid dehalogenase-like hydrolase AK40_843 PF00465 Iron-containing alcohol dehydrogenase AK40_844 PF01177 Asp/Glu/Hydantoin racemase AK40_845 PF01980 tRNA-methyltransferase O AK40_846 PF00583 Acetyltransferase (GNAT) family AK40_849 PF00005 ABC transporter AK40_85 PF00330 Aconitase family (aconitate hydratase) AK40_850 PF05975 Bacterial ABC transporter protein EcsB AK40_851 PF14005 YpjP-like protein AK40_852 PF13419 Haloacid dehalogenase-like hydrolase AK40_856 PF07930 D-aminopeptidase, domain B AK40_856 PF00144 Beta-lactamase AK40_858 PF00303 Thymidylate synthase AK40_859 PF00186 Dihydrofolate reductase AK40_86 PF00694 Aconitase C-terminal domain AK40_860 PF00905 Penicillin binding protein transpeptidase domain AK40_860 PF03717 Penicillin-binding Protein dimerisation domain AK40_860 PF05223 NTF2-like N-terminal transpeptidase domain AK40_861 PF02525 Flavodoxin-like fold AK40_862 PF01553 Acyltransferase AK40_863 PF03006 Haemolysin-III related AK40_864 PF02416 mttA/Hcf106 family AK40_865 PF00902 Sec-independent protein translocase protein (TatC) AK40_867 PF02645 Uncharacterised protein, DegV family COG1307 AK40_869 PF02630 SCO1/SenC AK40_87 PF13393 Histidyl-tRNA synthetase AK40_870 PF00011 Hsp20/alpha crystallin family AK40_871 PF00733 Asparagine synthase AK40_871 PF13537 Glutamine amidotransferase domain AK40_875 PF01497 Periplasmic binding protein AK40_876 PF01063 Amino-transferase class IV AK40_877 PF00881 Nitroreductase family AK40_88 PF01634 ATP phosphoribosyltransferase AK40_880 PF00857 Isochorismatase family AK40_881 PF00293 NUDIX domain AK40_882 PF00011 Hsp20/alpha crystallin family AK40_883 PF00924 Mechanosensitive ion channel AK40_884 PF07730 Histidine kinase AK40_884 PF13185 GAF domain AK40_885 PF00072 Response regulator receiver domain AK40_885 PF00196 Bacterial regulatory proteins, luxR family AK40_886 PF01380 SIS domain AK40_886 PF01418 Helix-turn-helix domain, rpiR family AK40_887 PF00107 Zinc-binding dehydrogenase AK40_887 PF08240 Alcohol dehydrogenase GroES-like domain AK40_89 PF00815 Histidinol dehydrogenase AK40_890 PF00144 Beta-lactamase AK40_892 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AK40_892 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AK40_895 PF03358 NADPH-dependent FMN reductase AK40_898 PF00571 CBS domain AK40_898 PF00005 ABC transporter AK40_899 PF00528 Binding-protein-dependent transport system inner membrane component AK40_90 PF00475 Imidazoleglycerol-phosphate dehydratase AK40_900 PF13520 Amino acid permease AK40_906 PF00571 CBS domain AK40_906 PF01595 Cyclin M transmembrane N-terminal domain AK40_906 PF03471 Transporter associated domain AK40_907 PF00171 Aldehyde dehydrogenase family AK40_908 PF07997 Protein of unknown function (DUF1694) AK40_909 PF09385 Histidine kinase N terminal AK40_91 PF00117 Glutamine amidotransferase class-I AK40_911 PF00202 Aminotransferase class-III AK40_912 PF01144 Coenzyme A transferase AK40_913 PF01144 Coenzyme A transferase AK40_914 PF01546 Peptidase family M20/M25/M40 AK40_914 PF07687 Peptidase dimerisation domain AK40_915 PF00583 Acetyltransferase (GNAT) family AK40_916 PF02954 Bacterial regulatory protein, Fis family AK40_916 PF00158 Sigma-54 interaction domain AK40_916 PF13426 PAS domain AK40_917 PF12544 Lysine-2,3-aminomutase AK40_918 PF14122 YokU-like protein, putative antitoxin AK40_919 PF06855 YozE SAM-like fold AK40_92 PF00977 Histidine biosynthesis protein AK40_922 PF14162 YozD-like protein AK40_924 PF00069 Protein kinase domain AK40_924 PF08239 Bacterial SH3 domain AK40_925 PF07070 SpoOM protein AK40_926 PF16916 Dimerisation domain of Zinc Transporter AK40_926 PF01545 Cation efflux family AK40_927 PF01569 PAP2 superfamily AK40_928 PF00085 Thioredoxin AK40_93 PF00977 Histidine biosynthesis protein AK40_94 PF01502 Phosphoribosyl-AMP cyclohydrolase AK40_944 PF10676 Spore germination protein gerPA/gerPF AK40_947 PF00106 short chain dehydrogenase AK40_95 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AK40_951 PF00912 Transglycosylase AK40_951 PF00905 Penicillin binding protein transpeptidase domain AK40_953 PF07690 Major Facilitator Superfamily AK40_954 PF01521 Iron-sulphur cluster biosynthesis AK40_955 PF00285 Citrate synthase, C-terminal domain AK40_956 PF03972 MmgE/PrpD family AK40_958 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AK40_958 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AK40_958 PF02770 Acyl-CoA dehydrogenase, middle domain AK40_959 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AK40_959 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AK40_96 PF02811 PHP domain AK40_960 PF00171 Aldehyde dehydrogenase family AK40_961 PF01810 LysE type translocator AK40_962 PF00378 Enoyl-CoA hydratase/isomerase AK40_964 PF10763 Protein of unknown function (DUF2584) AK40_965 PF00149 Calcineurin-like phosphoesterase AK40_965 PF12320 Type 5 capsule protein repressor C-terminal domain AK40_966 PF13476 AAA domain AK40_970 PF01022 Bacterial regulatory protein, arsR family AK40_972 PF07690 Major Facilitator Superfamily AK40_973 PF00106 short chain dehydrogenase AK40_974 PF00425 chorismate binding enzyme AK40_975 PF00501 AMP-binding enzyme AK40_975 PF13193 AMP-binding enzyme C-terminal domain AK40_976 PF00550 Phosphopantetheine attachment site AK40_976 PF00857 Isochorismatase family AK40_977 PF00501 AMP-binding enzyme AK40_977 PF13193 AMP-binding enzyme C-terminal domain AK40_977 PF00668 Condensation domain AK40_977 PF00975 Thioesterase domain AK40_977 PF00550 Phosphopantetheine attachment site AK40_978 PF03621 MbtH-like protein AK40_979 PF07690 Major Facilitator Superfamily AK40_98 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AK40_98 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AK40_982 PF00216 Bacterial DNA-binding protein AK40_984 PF05163 DinB family AK40_985 PF00082 Subtilase family AK40_986 PF01235 Sodium:alanine symporter family AK40_989 PF16291 Domain of unknown function (DUF4937 AK40_99 PF01066 CDP-alcohol phosphatidyltransferase AK40_990 PF01479 S4 domain AK40_990 PF00849 RNA pseudouridylate synthase AK40_991 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AK40_991 PF02824 TGS domain AK40_991 PF03129 Anticodon binding domain AK40_991 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AK40_993 PF00005 ABC transporter AK40_996 PF12146 Serine aminopeptidase, S33 AK40_997 PF07690 Major Facilitator Superfamily