AK40_10 SM00420 helix_turn_helix, Deoxyribose operon repressor AK40_10 SM01134 AK40_10 AK40_1004 SM00849 Metallo-beta-lactamase superfamily AK40_1010 SM00849 Metallo-beta-lactamase superfamily AK40_1014 SM01059 Chloramphenicol acetyltransferase AK40_1019 SM00530 Helix-turn-helix XRE-family like proteins AK40_1028 SM00357 Cold shock protein domain AK40_1034 SM00859 Semialdehyde dehydrogenase, NAD binding domain AK40_1041 SM00382 ATPases associated with a variety of cellular activities AK40_1042 SM00382 ATPases associated with a variety of cellular activities AK40_1044 SM00646 AK40_1044 AK40_1046 SM00530 Helix-turn-helix XRE-family like proteins AK40_1052 SM00835 Cupin AK40_1053 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_1067 SM01207 AK40_1067 AK40_1073 SM00849 Metallo-beta-lactamase superfamily AK40_1076 SM00487 DEAD-like helicases superfamily AK40_1076 SM00490 helicase superfamily c-terminal domain AK40_1082 SM00382 ATPases associated with a variety of cellular activities AK40_1094 SM00110 Complement component C1q domain. AK40_1102 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_1103 SM00855 Phosphoglycerate mutase family AK40_1113 SM00936 Penicillin-binding protein 5, C-terminal domain AK40_1122 SM00354 helix_turn _helix lactose operon repressor AK40_1138 SM00530 Helix-turn-helix XRE-family like proteins AK40_1143 SM00646 AK40_1143 AK40_1146 SM00382 ATPases associated with a variety of cellular activities AK40_1147 SM00052 Putative diguanylate phosphodiesterase AK40_1147 SM00091 PAS domain AK40_1147 SM00267 diguanylate cyclase AK40_1149 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_1149 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_1149 SM00319 Homologues of the ligand binding domain of Tar AK40_1151 SM00450 Rhodanese Homology Domain AK40_1151 SM00849 Metallo-beta-lactamase superfamily AK40_1156 SM00878 Biotin carboxylase C-terminal domain AK40_1169 SM00387 Histidine kinase-like ATPases AK40_1169 SM00388 His Kinase A (phosphoacceptor) domain AK40_1170 SM00448 cheY-homologous receiver domain AK40_1170 SM00862 Transcriptional regulatory protein, C terminal AK40_1180 SM00382 ATPases associated with a variety of cellular activities AK40_1184 SM00422 helix_turn_helix, mercury resistance AK40_1184 SM00871 Bacterial transcription activator, effector binding domain AK40_1191 SM00342 helix_turn_helix, arabinose operon control protein AK40_1194 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_12 SM00365 Leucine-rich repeat, SDS22-like subfamily AK40_12 SM00369 Leucine-rich repeats, typical (most populated) subfamily AK40_12 SM00725 NEAr Transporter domain AK40_120 SM00387 Histidine kinase-like ATPases AK40_1208 SM00448 cheY-homologous receiver domain AK40_1208 SM00862 Transcriptional regulatory protein, C terminal AK40_1209 SM00387 Histidine kinase-like ATPases AK40_121 SM00421 helix_turn_helix, Lux Regulon AK40_121 SM00448 cheY-homologous receiver domain AK40_1211 SM00382 ATPases associated with a variety of cellular activities AK40_1214 SM00382 ATPases associated with a variety of cellular activities AK40_1220 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_1221 SM01209 AK40_1221 AK40_1247 SM00091 PAS domain AK40_1247 SM00387 Histidine kinase-like ATPases AK40_1247 SM00388 His Kinase A (phosphoacceptor) domain AK40_1252 SM00382 ATPases associated with a variety of cellular activities AK40_1255 SM00387 Histidine kinase-like ATPases AK40_1255 SM00388 His Kinase A (phosphoacceptor) domain AK40_1258 SM00829 Enoylreductase AK40_1259 SM00014 Acid phosphatase homologues AK40_1260 SM00740 AK40_1260 AK40_1275 SM00422 helix_turn_helix, mercury resistance AK40_1284 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_1294 SM00480 DNA polymerase III beta subunit AK40_13 SM01007 Class II Aldolase and Adducin N-terminal domain AK40_1300 SM00855 Phosphoglycerate mutase family AK40_1314 SM00465 GIY-YIG type nucleases (URI domain) AK40_1329 SM00014 Acid phosphatase homologues AK40_1330 SM00642 Alpha-amylase domain AK40_1334 SM00871 Bacterial transcription activator, effector binding domain AK40_1340 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_1362 SM00382 ATPases associated with a variety of cellular activities AK40_1366 SM00420 helix_turn_helix, Deoxyribose operon repressor AK40_1366 SM01134 AK40_1366 AK40_1375 SM00861 Transketolase, pyrimidine binding domain AK40_1388 SM00116 Domain in cystathionine beta-synthase and other proteins. AK40_1388 SM00382 ATPases associated with a variety of cellular activities AK40_139 SM00091 PAS domain AK40_139 SM00387 Histidine kinase-like ATPases AK40_139 SM00388 His Kinase A (phosphoacceptor) domain AK40_1395 SM00060 Fibronectin type 3 domain AK40_1395 SM00495 Chitin-binding domain type 3 AK40_1401 SM00849 Metallo-beta-lactamase superfamily AK40_1415 SM00341 Helicase and RNase D C-terminal AK40_1415 SM00487 DEAD-like helicases superfamily AK40_1415 SM00490 helicase superfamily c-terminal domain AK40_1415 SM00956 AK40_1415 AK40_1423 SM01131 AK40_1423 AK40_1429 SM01130 AK40_1429 AK40_143 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_143 SM00387 Histidine kinase-like ATPases AK40_143 SM00388 His Kinase A (phosphoacceptor) domain AK40_1433 SM00091 PAS domain AK40_1433 SM00382 ATPases associated with a variety of cellular activities AK40_1447 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AK40_1456 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AK40_1457 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_1457 SM00387 Histidine kinase-like ATPases AK40_1457 SM00388 His Kinase A (phosphoacceptor) domain AK40_1458 SM00448 cheY-homologous receiver domain AK40_1458 SM00862 Transcriptional regulatory protein, C terminal AK40_1466 SM00344 helix_turn_helix ASNC type AK40_1498 SM00382 ATPases associated with a variety of cellular activities AK40_1499 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_1511 SM00062 Bacterial periplasmic substrate-binding proteins AK40_1512 SM00382 ATPases associated with a variety of cellular activities AK40_1516 SM00028 Tetratricopeptide repeats AK40_153 SM00363 S4 RNA-binding domain AK40_1534 SM00382 ATPases associated with a variety of cellular activities AK40_1543 SM00830 Chorismate mutase type II AK40_1551 SM00287 Bacterial SH3 domain homologues AK40_1556 SM00091 PAS domain AK40_1556 SM00382 ATPases associated with a variety of cellular activities AK40_1563 SM00382 ATPases associated with a variety of cellular activities AK40_1567 SM01133 AK40_1567 AK40_157 SM00448 cheY-homologous receiver domain AK40_157 SM00862 Transcriptional regulatory protein, C terminal AK40_1574 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_1578 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AK40_158 SM00091 PAS domain AK40_158 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_158 SM00387 Histidine kinase-like ATPases AK40_158 SM00388 His Kinase A (phosphoacceptor) domain AK40_1581 SM00346 helix_turn_helix isocitrate lyase regulation AK40_1585 SM00098 Alkaline phosphatase homologues AK40_1587 SM00530 Helix-turn-helix XRE-family like proteins AK40_1592 SM00850 LytTr DNA-binding domain AK40_160 SM00257 Lysin motif AK40_1611 SM01060 AK40_1611 AK40_1617 SM00860 SMI1 / KNR4 family AK40_1621 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_1622 SM00889 Elongation factor G, domain IV AK40_1627 SM00382 ATPases associated with a variety of cellular activities AK40_1628 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_1629 SM00860 SMI1 / KNR4 family AK40_1631 SM00382 ATPases associated with a variety of cellular activities AK40_1636 SM00342 helix_turn_helix, arabinose operon control protein AK40_1636 SM00871 Bacterial transcription activator, effector binding domain AK40_1641 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_165 SM00487 DEAD-like helicases superfamily AK40_165 SM00490 helicase superfamily c-terminal domain AK40_1667 SM00797 Allophanate hydrolase subunit 2 AK40_1668 SM00796 Allophanate hydrolase subunit 1 AK40_1669 SM00346 helix_turn_helix isocitrate lyase regulation AK40_167 SM00257 Lysin motif AK40_1673 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_1686 SM00849 Metallo-beta-lactamase superfamily AK40_169 SM00422 helix_turn_helix, mercury resistance AK40_17 SM00387 Histidine kinase-like ATPases AK40_17 SM00388 His Kinase A (phosphoacceptor) domain AK40_1702 SM00870 AK40_1702 AK40_1703 SM00530 Helix-turn-helix XRE-family like proteins AK40_1708 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AK40_1708 SM00091 PAS domain AK40_1708 SM00387 Histidine kinase-like ATPases AK40_1708 SM00388 His Kinase A (phosphoacceptor) domain AK40_171 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK40_1713 SM00342 helix_turn_helix, arabinose operon control protein AK40_1717 SM00448 cheY-homologous receiver domain AK40_1718 SM00387 Histidine kinase-like ATPases AK40_174 SM00644 AK40_174 AK40_1742 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_1744 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_1744 SM00387 Histidine kinase-like ATPases AK40_1744 SM00388 His Kinase A (phosphoacceptor) domain AK40_1745 SM00448 cheY-homologous receiver domain AK40_1745 SM00862 Transcriptional regulatory protein, C terminal AK40_176 SM00870 AK40_176 AK40_1762 SM00382 ATPases associated with a variety of cellular activities AK40_1765 SM00421 helix_turn_helix, Lux Regulon AK40_1765 SM00448 cheY-homologous receiver domain AK40_1768 SM00382 ATPases associated with a variety of cellular activities AK40_1772 SM00226 Low molecular weight phosphatase family AK40_1775 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_1778 SM00028 Tetratricopeptide repeats AK40_179 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_1793 SM00448 cheY-homologous receiver domain AK40_1793 SM00862 Transcriptional regulatory protein, C terminal AK40_1794 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_1794 SM00387 Histidine kinase-like ATPases AK40_1794 SM00388 His Kinase A (phosphoacceptor) domain AK40_18 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_180 SM01240 AK40_180 AK40_1804 SM00849 Metallo-beta-lactamase superfamily AK40_1812 SM00422 helix_turn_helix, mercury resistance AK40_1816 SM00382 ATPases associated with a variety of cellular activities AK40_1818 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_1820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_1820 SM00387 Histidine kinase-like ATPases AK40_1820 SM00388 His Kinase A (phosphoacceptor) domain AK40_1821 SM00448 cheY-homologous receiver domain AK40_1821 SM00862 Transcriptional regulatory protein, C terminal AK40_1823 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_1831 SM00450 Rhodanese Homology Domain AK40_1831 SM00849 Metallo-beta-lactamase superfamily AK40_1837 SM00387 Histidine kinase-like ATPases AK40_1837 SM00388 His Kinase A (phosphoacceptor) domain AK40_1838 SM00448 cheY-homologous receiver domain AK40_1838 SM00862 Transcriptional regulatory protein, C terminal AK40_1845 SM00354 helix_turn _helix lactose operon repressor AK40_1846 SM00028 Tetratricopeptide repeats AK40_1862 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_1862 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_1862 SM00319 Homologues of the ligand binding domain of Tar AK40_1871 SM00344 helix_turn_helix ASNC type AK40_1881 SM00342 helix_turn_helix, arabinose operon control protein AK40_1883 SM00860 SMI1 / KNR4 family AK40_1887 SM00287 Bacterial SH3 domain homologues AK40_1887 SM00644 AK40_1887 AK40_1897 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_1902 SM00382 ATPases associated with a variety of cellular activities AK40_1904 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_191 SM00411 bacterial (prokaryotic) histone like domain AK40_1918 SM00382 ATPases associated with a variety of cellular activities AK40_1928 SM00422 helix_turn_helix, mercury resistance AK40_1931 SM00530 Helix-turn-helix XRE-family like proteins AK40_1933 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_1938 SM00387 Histidine kinase-like ATPases AK40_1938 SM00421 helix_turn_helix, Lux Regulon AK40_1938 SM00448 cheY-homologous receiver domain AK40_1949 SM00382 ATPases associated with a variety of cellular activities AK40_1952 SM00530 Helix-turn-helix XRE-family like proteins AK40_196 SM00562 AK40_196 AK40_1965 SM01266 AK40_1965 AK40_1967 SM00382 ATPases associated with a variety of cellular activities AK40_1978 SM00028 Tetratricopeptide repeats AK40_1983 SM01091 Transporter associated domain AK40_1984 SM00422 helix_turn_helix, mercury resistance AK40_1992 SM01350 AK40_1992 AK40_1993 SM00861 Transketolase, pyrimidine binding domain AK40_200 SM00028 Tetratricopeptide repeats AK40_2000 SM00914 AK40_2000 AK40_2004 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_2004 SM00866 AK40_2004 AK40_2008 SM00849 Metallo-beta-lactamase superfamily AK40_201 SM00914 AK40_201 AK40_2021 SM00248 ankyrin repeats AK40_2022 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_2023 SM00636 AK40_2023 AK40_2029 SM00871 Bacterial transcription activator, effector binding domain AK40_2037 SM00382 ATPases associated with a variety of cellular activities AK40_2043 SM00849 Metallo-beta-lactamase superfamily AK40_2044 SM00641 Glycosyl hydrolases family 25 AK40_2057 SM00849 Metallo-beta-lactamase superfamily AK40_2058 SM00829 Enoylreductase AK40_2079 SM00829 Enoylreductase AK40_2080 SM00855 Phosphoglycerate mutase family AK40_2082 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AK40_2082 SM00534 ATPase domain of DNA mismatch repair MUTS family AK40_2086 SM00642 Alpha-amylase domain AK40_210 SM00986 Uracil DNA glycosylase superfamily AK40_210 SM00987 UreE urease accessory protein, C-terminal domain AK40_2100 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_2101 SM00829 Enoylreductase AK40_2103 SM00028 Tetratricopeptide repeats AK40_2117 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AK40_2125 SM00479 AK40_2125 AK40_2126 SM00357 Cold shock protein domain AK40_214 SM00851 MGS-like domain AK40_2155 SM00852 Probable molybdopterin binding domain AK40_2158 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_2162 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AK40_2162 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK40_2183 SM00382 ATPases associated with a variety of cellular activities AK40_2187 SM00434 DNA Topoisomerase IV AK40_2188 SM00387 Histidine kinase-like ATPases AK40_2188 SM00433 TopoisomeraseII AK40_2189 SM00881 CoA binding domain AK40_2190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK40_2191 SM00448 cheY-homologous receiver domain AK40_2191 SM00862 Transcriptional regulatory protein, C terminal AK40_2194 SM01207 AK40_2194 AK40_2197 SM00257 Lysin motif AK40_2197 SM00636 AK40_2197 AK40_22 SM00387 Histidine kinase-like ATPases AK40_22 SM00388 His Kinase A (phosphoacceptor) domain AK40_2201 SM00479 AK40_2201 AK40_2204 SM00382 ATPases associated with a variety of cellular activities AK40_2218 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK40_223 SM00479 AK40_223 AK40_223 SM00491 AK40_223 AK40_2232 SM00644 AK40_2232 AK40_2232 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AK40_2233 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AK40_2236 SM00091 PAS domain AK40_2236 SM00387 Histidine kinase-like ATPases AK40_2236 SM00388 His Kinase A (phosphoacceptor) domain AK40_2242 SM01058 CarD-like/TRCF domain AK40_2261 SM00382 ATPases associated with a variety of cellular activities AK40_2271 SM00644 AK40_2271 AK40_2274 SM00382 ATPases associated with a variety of cellular activities AK40_2275 SM00382 ATPases associated with a variety of cellular activities AK40_2278 SM00861 Transketolase, pyrimidine binding domain AK40_228 SM00478 endonuclease III AK40_228 SM00525 AK40_228 AK40_2281 SM00382 ATPases associated with a variety of cellular activities AK40_2282 SM00062 Bacterial periplasmic substrate-binding proteins AK40_2285 SM00857 Resolvase, N terminal domain AK40_2290 SM01230 AK40_2290 AK40_2291 SM00422 helix_turn_helix, mercury resistance AK40_2296 SM00382 ATPases associated with a variety of cellular activities AK40_230 SM00060 Fibronectin type 3 domain AK40_2302 SM00287 Bacterial SH3 domain homologues AK40_2305 SM00420 helix_turn_helix, Deoxyribose operon repressor AK40_2305 SM01134 AK40_2305 AK40_2311 SM00636 AK40_2311 AK40_2315 SM00411 bacterial (prokaryotic) histone like domain AK40_2321 SM00382 ATPases associated with a variety of cellular activities AK40_2326 SM00342 helix_turn_helix, arabinose operon control protein AK40_2328 SM00478 endonuclease III AK40_2335 SM00052 Putative diguanylate phosphodiesterase AK40_2335 SM00091 PAS domain AK40_2335 SM00267 diguanylate cyclase AK40_2345 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_2347 SM00148 Phospholipase C, catalytic domain (part); domain X AK40_2349 SM00257 Lysin motif AK40_2356 SM00853 MutL C terminal dimerisation domain AK40_2356 SM01340 AK40_2356 AK40_2357 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AK40_2357 SM00534 ATPase domain of DNA mismatch repair MUTS family AK40_2360 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_2366 SM00322 K homology RNA-binding domain AK40_2366 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_2368 SM00382 ATPases associated with a variety of cellular activities AK40_2369 SM00852 Probable molybdopterin binding domain AK40_2379 SM00382 ATPases associated with a variety of cellular activities AK40_2381 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_2381 SM00866 AK40_2381 AK40_2382 SM00382 ATPases associated with a variety of cellular activities AK40_2382 SM00843 AK40_2382 AK40_2385 SM00849 Metallo-beta-lactamase superfamily AK40_2386 SM01130 AK40_2386 AK40_2388 SM00859 Semialdehyde dehydrogenase, NAD binding domain AK40_2394 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_2394 SM00322 K homology RNA-binding domain AK40_2395 SM01387 AK40_2395 AK40_2396 SM00904 Riboflavin kinase AK40_2403 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_2403 SM00322 K homology RNA-binding domain AK40_2406 SM00507 HNH nucleases AK40_2408 SM00479 AK40_2408 AK40_2408 SM00481 DNA polymerase alpha chain like domain AK40_241 SM00981 AK40_241 AK40_2410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK40_2419 SM00382 ATPases associated with a variety of cellular activities AK40_2419 SM01086 C-terminal, D2-small domain, of ClpB protein AK40_2423 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK40_2423 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK40_2423 SM00493 AK40_2423 AK40_2425 SM00881 CoA binding domain AK40_243 SM00491 AK40_243 AK40_2435 SM00382 ATPases associated with a variety of cellular activities AK40_2435 SM00962 SRP54-type protein, GTPase domain AK40_2435 SM00963 SRP54-type protein, helical bundle domain AK40_2437 SM00382 ATPases associated with a variety of cellular activities AK40_2437 SM00962 SRP54-type protein, GTPase domain AK40_2437 SM00963 SRP54-type protein, helical bundle domain AK40_2438 SM00968 SMC proteins Flexible Hinge Domain AK40_2439 SM00358 Double-stranded RNA binding motif AK40_2439 SM00535 Ribonuclease III family AK40_2441 SM00822 AK40_2441 AK40_2442 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AK40_2445 SM00487 DEAD-like helicases superfamily AK40_2445 SM00490 helicase superfamily c-terminal domain AK40_2446 SM01120 AK40_2446 AK40_2446 SM01121 AK40_2446 AK40_2449 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AK40_2452 SM00220 Serine/Threonine protein kinases, catalytic domain AK40_2452 SM00740 AK40_2452 AK40_2453 SM00331 Sigma factor PP2C-like phosphatases AK40_2453 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AK40_2458 SM00487 DEAD-like helicases superfamily AK40_2458 SM00490 helicase superfamily c-terminal domain AK40_2460 SM01409 AK40_2460 AK40_2461 SM00072 Guanylate kinase homologues. AK40_2464 SM00831 Cation transporter/ATPase, N-terminus AK40_2474 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AK40_2477 SM00851 MGS-like domain AK40_2477 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AK40_2477 SM01209 AK40_2477 AK40_2478 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AK40_2483 SM00363 S4 RNA-binding domain AK40_2488 SM00363 S4 RNA-binding domain AK40_2497 SM00864 Tubulin/FtsZ family, GTPase domain AK40_2497 SM00865 Tubulin/FtsZ family, C-terminal domain AK40_2498 SM00842 Cell division protein FtsA AK40_2506 SM00740 AK40_2506 AK40_2507 SM00740 AK40_2507 AK40_2513 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains AK40_2517 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK40_2525 SM00855 Phosphoglycerate mutase family AK40_2538 SM00878 Biotin carboxylase C-terminal domain AK40_2542 SM00670 Large family of predicted nucleotide-binding domains AK40_2547 SM00838 Elongation factor G C-terminus AK40_256 SM00450 Rhodanese Homology Domain AK40_2563 SM00861 Transketolase, pyrimidine binding domain AK40_2569 SM00849 Metallo-beta-lactamase superfamily AK40_2582 SM00052 Putative diguanylate phosphodiesterase AK40_2590 SM00267 diguanylate cyclase AK40_2599 SM00387 Histidine kinase-like ATPases AK40_2599 SM00388 His Kinase A (phosphoacceptor) domain AK40_2602 SM00354 helix_turn _helix lactose operon repressor AK40_2606 SM00642 Alpha-amylase domain AK40_2607 SM00642 Alpha-amylase domain AK40_2608 SM00382 ATPases associated with a variety of cellular activities AK40_2616 SM00382 ATPases associated with a variety of cellular activities AK40_263 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AK40_263 SM00475 5'-3' exonuclease AK40_2632 SM01007 Class II Aldolase and Adducin N-terminal domain AK40_2637 SM00267 diguanylate cyclase AK40_2644 SM01061 CAT RNA binding domain AK40_2646 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_2646 SM00866 AK40_2646 AK40_2649 SM00849 Metallo-beta-lactamase superfamily AK40_2668 SM00387 Histidine kinase-like ATPases AK40_2670 SM00936 Penicillin-binding protein 5, C-terminal domain AK40_2671 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_2672 SM00382 ATPases associated with a variety of cellular activities AK40_2675 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_2679 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AK40_2698 SM00354 helix_turn _helix lactose operon repressor AK40_2702 SM00704 CDGSH-type zinc finger. Function unknown. AK40_2708 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_2708 SM00876 Biotin and Thiamin Synthesis associated domain AK40_2718 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_2725 SM00859 Semialdehyde dehydrogenase, NAD binding domain AK40_2728 SM00849 Metallo-beta-lactamase superfamily AK40_2732 SM00849 Metallo-beta-lactamase superfamily AK40_2741 SM00382 ATPases associated with a variety of cellular activities AK40_2743 SM00062 Bacterial periplasmic substrate-binding proteins AK40_2743 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK40_2749 SM00861 Transketolase, pyrimidine binding domain AK40_2753 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AK40_2755 SM00091 PAS domain AK40_2755 SM00382 ATPases associated with a variety of cellular activities AK40_276 SM00357 Cold shock protein domain AK40_2760 SM00448 cheY-homologous receiver domain AK40_2761 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK40_2764 SM00363 S4 RNA-binding domain AK40_2765 SM00861 Transketolase, pyrimidine binding domain AK40_2772 SM00878 Biotin carboxylase C-terminal domain AK40_2782 SM00382 ATPases associated with a variety of cellular activities AK40_2786 SM00841 Elongation factor P, C-terminal AK40_2786 SM01185 AK40_2786 AK40_2793 SM00529 Helix-turn-helix diphteria tox regulatory element AK40_2799 SM00450 Rhodanese Homology Domain AK40_2800 SM00354 helix_turn _helix lactose operon repressor AK40_2810 SM00382 ATPases associated with a variety of cellular activities AK40_2811 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_2817 SM00487 DEAD-like helicases superfamily AK40_2817 SM00490 helicase superfamily c-terminal domain AK40_2826 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AK40_2833 SM00382 ATPases associated with a variety of cellular activities AK40_2843 SM01018 B12 binding domain AK40_2847 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_2849 SM00849 Metallo-beta-lactamase superfamily AK40_2857 SM00382 ATPases associated with a variety of cellular activities AK40_2870 SM00382 ATPases associated with a variety of cellular activities AK40_2873 SM00518 AP endonuclease family 2 AK40_2874 SM00487 DEAD-like helicases superfamily AK40_2874 SM00490 helicase superfamily c-terminal domain AK40_2881 SM00400 zinc finger AK40_2881 SM00493 AK40_2881 AK40_2881 SM00766 DNA primase DnaG DnaB-binding AK40_2883 SM00116 Domain in cystathionine beta-synthase and other proteins. AK40_2890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_2896 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_2899 SM00271 DnaJ molecular chaperone homology domain AK40_290 SM00849 Metallo-beta-lactamase superfamily AK40_2903 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_2905 SM00838 Elongation factor G C-terminus AK40_291 SM00422 helix_turn_helix, mercury resistance AK40_291 SM00871 Bacterial transcription activator, effector binding domain AK40_2911 SM00849 Metallo-beta-lactamase superfamily AK40_2913 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK40_2917 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_2919 SM01103 AK40_2919 AK40_2930 SM00954 Region found in RelA / SpoT proteins AK40_2932 SM00098 Alkaline phosphatase homologues AK40_2937 SM00855 Phosphoglycerate mutase family AK40_2945 SM00530 Helix-turn-helix XRE-family like proteins AK40_2950 SM00382 ATPases associated with a variety of cellular activities AK40_2969 SM00732 Likely ribonuclease with RNase H fold. AK40_2971 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK40_2978 SM00028 Tetratricopeptide repeats AK40_2982 SM00382 ATPases associated with a variety of cellular activities AK40_2989 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_2989 SM00954 Region found in RelA / SpoT proteins AK40_2998 SM01323 AK40_2998 AK40_3002 SM00382 ATPases associated with a variety of cellular activities AK40_3003 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK40_3007 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_3010 SM00257 Lysin motif AK40_3020 SM00382 ATPases associated with a variety of cellular activities AK40_3021 SM00387 Histidine kinase-like ATPases AK40_3022 SM00448 cheY-homologous receiver domain AK40_3022 SM00862 Transcriptional regulatory protein, C terminal AK40_3024 SM01317 AK40_3024 AK40_3043 SM00382 ATPases associated with a variety of cellular activities AK40_3049 SM00487 DEAD-like helicases superfamily AK40_3049 SM00491 AK40_3049 AK40_3055 SM00530 Helix-turn-helix XRE-family like proteins AK40_3066 SM00257 Lysin motif AK40_3068 SM01004 Delta-aminolevulinic acid dehydratase AK40_3073 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_3076 SM00382 ATPases associated with a variety of cellular activities AK40_3076 SM00464 Found in ATP-dependent protease La (LON) AK40_3077 SM00382 ATPases associated with a variety of cellular activities AK40_3078 SM00382 ATPases associated with a variety of cellular activities AK40_3078 SM00994 ClpX C4-type zinc finger AK40_3078 SM01086 C-terminal, D2-small domain, of ClpB protein AK40_309 SM00448 cheY-homologous receiver domain AK40_3090 SM00909 Sporulation and spore germination AK40_3097 SM00421 helix_turn_helix, Lux Regulon AK40_310 SM00073 Histidine Phosphotransfer domain AK40_310 SM00260 Two component signalling adaptor domain AK40_310 SM00387 Histidine kinase-like ATPases AK40_310 SM01231 AK40_310 AK40_3101 SM00530 Helix-turn-helix XRE-family like proteins AK40_3106 SM00382 ATPases associated with a variety of cellular activities AK40_3116 SM00465 GIY-YIG type nucleases (URI domain) AK40_3118 SM00893 Electron transfer flavoprotein domain AK40_3119 SM00893 Electron transfer flavoprotein domain AK40_3131 SM00382 ATPases associated with a variety of cellular activities AK40_3132 SM00387 Histidine kinase-like ATPases AK40_3132 SM00388 His Kinase A (phosphoacceptor) domain AK40_3133 SM00448 cheY-homologous receiver domain AK40_3133 SM00862 Transcriptional regulatory protein, C terminal AK40_3136 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AK40_314 SM00138 Methyltransferase, chemotaxis proteins AK40_3140 SM00382 ATPases associated with a variety of cellular activities AK40_3143 SM00725 NEAr Transporter domain AK40_3144 SM00725 NEAr Transporter domain AK40_3146 SM00363 S4 RNA-binding domain AK40_3148 SM00463 Small MutS-related domain AK40_3148 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AK40_3148 SM00534 ATPase domain of DNA mismatch repair MUTS family AK40_3149 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK40_3149 SM00481 DNA polymerase alpha chain like domain AK40_3149 SM00483 DNA polymerase X family AK40_3157 SM00873 B3/4 domain AK40_3157 SM00874 tRNA synthetase B5 domain AK40_3157 SM00896 Ferredoxin-fold anticodon binding domain AK40_3159 SM00967 RNA 2'-O ribose methyltransferase substrate binding AK40_3176 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK40_3178 SM00382 ATPases associated with a variety of cellular activities AK40_3182 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK40_3185 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AK40_3185 SM01232 AK40_3185 AK40_3186 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AK40_3186 SM00474 3'-5' exonuclease AK40_3186 SM00475 5'-3' exonuclease AK40_3186 SM00482 DNA polymerase A domain AK40_3187 SM00091 PAS domain AK40_3187 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3187 SM00387 Histidine kinase-like ATPases AK40_3187 SM00388 His Kinase A (phosphoacceptor) domain AK40_3188 SM00448 cheY-homologous receiver domain AK40_3188 SM00862 Transcriptional regulatory protein, C terminal AK40_3193 SM01329 AK40_3193 AK40_3202 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_3203 SM00919 Malic enzyme, NAD binding domain AK40_3203 SM01274 AK40_3203 AK40_3204 SM00481 DNA polymerase alpha chain like domain AK40_3211 SM00116 Domain in cystathionine beta-synthase and other proteins. AK40_3213 SM00849 Metallo-beta-lactamase superfamily AK40_3225 SM00530 Helix-turn-helix XRE-family like proteins AK40_3227 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AK40_3227 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AK40_3255 SM00981 AK40_3255 AK40_3263 SM00363 S4 RNA-binding domain AK40_3263 SM01390 AK40_3263 AK40_3267 SM00860 SMI1 / KNR4 family AK40_3270 SM00363 S4 RNA-binding domain AK40_3277 SM00116 Domain in cystathionine beta-synthase and other proteins. AK40_3281 SM00448 cheY-homologous receiver domain AK40_3281 SM00862 Transcriptional regulatory protein, C terminal AK40_3282 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3282 SM00387 Histidine kinase-like ATPases AK40_3282 SM00388 His Kinase A (phosphoacceptor) domain AK40_3283 SM00248 ankyrin repeats AK40_329 SM00382 ATPases associated with a variety of cellular activities AK40_3290 SM00354 helix_turn _helix lactose operon repressor AK40_3299 SM00382 ATPases associated with a variety of cellular activities AK40_3307 SM00382 ATPases associated with a variety of cellular activities AK40_3307 SM00843 AK40_3307 AK40_3315 SM00849 Metallo-beta-lactamase superfamily AK40_3319 SM00642 Alpha-amylase domain AK40_3322 SM00420 helix_turn_helix, Deoxyribose operon repressor AK40_3323 SM00363 S4 RNA-binding domain AK40_3327 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_3332 SM01058 CarD-like/TRCF domain AK40_3339 SM00852 Probable molybdopterin binding domain AK40_3342 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_3346 SM00450 Rhodanese Homology Domain AK40_336 SM00260 Two component signalling adaptor domain AK40_336 SM00448 cheY-homologous receiver domain AK40_3362 SM00382 ATPases associated with a variety of cellular activities AK40_3366 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_3368 SM00382 ATPases associated with a variety of cellular activities AK40_3379 SM00014 Acid phosphatase homologues AK40_3382 SM00852 Probable molybdopterin binding domain AK40_3395 SM00420 helix_turn_helix, Deoxyribose operon repressor AK40_3395 SM01134 AK40_3395 AK40_3397 SM00387 Histidine kinase-like ATPases AK40_3398 SM00387 Histidine kinase-like ATPases AK40_3398 SM00388 His Kinase A (phosphoacceptor) domain AK40_3404 SM00382 ATPases associated with a variety of cellular activities AK40_3415 SM00947 Carbonic anhydrase AK40_3416 SM01234 AK40_3416 AK40_3420 SM00894 Excalibur calcium-binding domain AK40_3440 SM00899 AK40_3440 AK40_3442 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3442 SM00387 Histidine kinase-like ATPases AK40_3442 SM00388 His Kinase A (phosphoacceptor) domain AK40_3443 SM00448 cheY-homologous receiver domain AK40_3443 SM00862 Transcriptional regulatory protein, C terminal AK40_3449 SM00046 Diacylglycerol kinase catalytic domain (presumed) AK40_3457 SM00382 ATPases associated with a variety of cellular activities AK40_3458 SM00342 helix_turn_helix, arabinose operon control protein AK40_3458 SM00871 Bacterial transcription activator, effector binding domain AK40_3459 SM00448 cheY-homologous receiver domain AK40_3459 SM00862 Transcriptional regulatory protein, C terminal AK40_3460 SM00387 Histidine kinase-like ATPases AK40_3463 SM00382 ATPases associated with a variety of cellular activities AK40_3467 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_3467 SM00866 AK40_3467 AK40_3473 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3473 SM00387 Histidine kinase-like ATPases AK40_3473 SM00388 His Kinase A (phosphoacceptor) domain AK40_3474 SM00448 cheY-homologous receiver domain AK40_3474 SM00862 Transcriptional regulatory protein, C terminal AK40_3475 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AK40_3483 SM00357 Cold shock protein domain AK40_3491 SM00642 Alpha-amylase domain AK40_35 SM00507 HNH nucleases AK40_350 SM00382 ATPases associated with a variety of cellular activities AK40_350 SM00962 SRP54-type protein, GTPase domain AK40_352 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK40_3539 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_3541 SM00344 helix_turn_helix ASNC type AK40_3548 SM01298 AK40_3548 AK40_3549 SM00479 AK40_3549 AK40_3568 SM00871 Bacterial transcription activator, effector binding domain AK40_3577 SM00382 ATPases associated with a variety of cellular activities AK40_3590 SM00382 ATPases associated with a variety of cellular activities AK40_3601 SM00422 helix_turn_helix, mercury resistance AK40_3604 SM00855 Phosphoglycerate mutase family AK40_3606 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_361 SM00530 Helix-turn-helix XRE-family like proteins AK40_3617 SM00382 ATPases associated with a variety of cellular activities AK40_3621 SM00382 ATPases associated with a variety of cellular activities AK40_3621 SM00930 AK40_3621 AK40_3624 SM00493 AK40_3624 AK40_3642 SM00530 Helix-turn-helix XRE-family like proteins AK40_3644 SM00849 Metallo-beta-lactamase superfamily AK40_3647 SM00382 ATPases associated with a variety of cellular activities AK40_365 SM00382 ATPases associated with a variety of cellular activities AK40_3660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_3660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3676 SM00530 Helix-turn-helix XRE-family like proteins AK40_368 SM00849 Metallo-beta-lactamase superfamily AK40_368 SM01027 Beta-Casp domain AK40_3681 SM00448 cheY-homologous receiver domain AK40_3681 SM00862 Transcriptional regulatory protein, C terminal AK40_3682 SM00387 Histidine kinase-like ATPases AK40_3682 SM00388 His Kinase A (phosphoacceptor) domain AK40_3686 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_3686 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3687 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_3687 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3691 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_3708 SM01276 AK40_3708 AK40_3715 SM00363 S4 RNA-binding domain AK40_3717 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AK40_3718 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_372 SM00835 Cupin AK40_3725 SM00382 ATPases associated with a variety of cellular activities AK40_3732 SM00382 ATPases associated with a variety of cellular activities AK40_3736 SM00448 cheY-homologous receiver domain AK40_3736 SM00862 Transcriptional regulatory protein, C terminal AK40_3738 SM00382 ATPases associated with a variety of cellular activities AK40_375 SM00855 Phosphoglycerate mutase family AK40_3752 SM00382 ATPases associated with a variety of cellular activities AK40_3760 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_3760 SM00357 Cold shock protein domain AK40_3760 SM00955 AK40_3760 AK40_3766 SM01192 AK40_3766 AK40_3766 SM01193 AK40_3766 AK40_3770 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AK40_379 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_3790 SM00028 Tetratricopeptide repeats AK40_3798 SM00487 DEAD-like helicases superfamily AK40_3798 SM00490 helicase superfamily c-terminal domain AK40_38 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_3801 SM00422 helix_turn_helix, mercury resistance AK40_3804 SM00530 Helix-turn-helix XRE-family like proteins AK40_3807 SM00422 helix_turn_helix, mercury resistance AK40_3811 SM00382 ATPases associated with a variety of cellular activities AK40_3813 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK40_3813 SM00245 tail specific protease AK40_3815 SM00382 ATPases associated with a variety of cellular activities AK40_3817 SM00937 AK40_3817 AK40_3818 SM00957 SecA DEAD-like domain AK40_3818 SM00958 SecA preprotein cross-linking domain AK40_3820 SM00357 Cold shock protein domain AK40_3822 SM00487 DEAD-like helicases superfamily AK40_3822 SM00490 helicase superfamily c-terminal domain AK40_3829 SM00984 UDP binding domain AK40_3832 SM00382 ATPases associated with a variety of cellular activities AK40_3833 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AK40_3843 SM00850 LytTr DNA-binding domain AK40_3868 SM00287 Bacterial SH3 domain homologues AK40_387 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_387 SM00895 AK40_387 AK40_3874 SM00287 Bacterial SH3 domain homologues AK40_3880 SM00487 DEAD-like helicases superfamily AK40_3880 SM00490 helicase superfamily c-terminal domain AK40_389 SM00833 Cobalamin synthesis protein cobW C-terminal domain AK40_3890 SM00382 ATPases associated with a variety of cellular activities AK40_3892 SM00530 Helix-turn-helix XRE-family like proteins AK40_3897 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_3897 SM00387 Histidine kinase-like ATPases AK40_3897 SM00388 His Kinase A (phosphoacceptor) domain AK40_3898 SM00448 cheY-homologous receiver domain AK40_3898 SM00862 Transcriptional regulatory protein, C terminal AK40_39 SM00382 ATPases associated with a variety of cellular activities AK40_3903 SM00984 UDP binding domain AK40_3920 SM00382 ATPases associated with a variety of cellular activities AK40_3921 SM00850 LytTr DNA-binding domain AK40_3937 SM00052 Putative diguanylate phosphodiesterase AK40_3937 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AK40_3937 SM00091 PAS domain AK40_3937 SM00267 diguanylate cyclase AK40_3941 SM00382 ATPases associated with a variety of cellular activities AK40_3954 SM00226 Low molecular weight phosphatase family AK40_3957 SM00903 Flavin reductase like domain AK40_3965 SM00937 AK40_3965 AK40_3968 SM00357 Cold shock protein domain AK40_3968 SM00382 ATPases associated with a variety of cellular activities AK40_3968 SM00959 Rho termination factor, N-terminal domain AK40_3972 SM00448 cheY-homologous receiver domain AK40_3982 SM00530 Helix-turn-helix XRE-family like proteins AK40_3988 SM00530 Helix-turn-helix XRE-family like proteins AK40_3999 SM00155 Phospholipase D. Active site motifs. AK40_4001 SM00052 Putative diguanylate phosphodiesterase AK40_4001 SM00267 diguanylate cyclase AK40_4003 SM00530 Helix-turn-helix XRE-family like proteins AK40_4005 SM00421 helix_turn_helix, Lux Regulon AK40_4005 SM00448 cheY-homologous receiver domain AK40_4006 SM00387 Histidine kinase-like ATPases AK40_4008 SM00382 ATPases associated with a variety of cellular activities AK40_4016 SM00836 DALR anticodon binding domain AK40_4016 SM01016 Arginyl tRNA synthetase N terminal dom AK40_4024 SM00422 helix_turn_helix, mercury resistance AK40_4030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_4032 SM00382 ATPases associated with a variety of cellular activities AK40_4041 SM00936 Penicillin-binding protein 5, C-terminal domain AK40_405 SM00530 Helix-turn-helix XRE-family like proteins AK40_4050 SM00986 Uracil DNA glycosylase superfamily AK40_4050 SM00987 UreE urease accessory protein, C-terminal domain AK40_4052 SM00382 ATPases associated with a variety of cellular activities AK40_4054 SM00354 helix_turn _helix lactose operon repressor AK40_4060 SM00857 Resolvase, N terminal domain AK40_4062 SM00100 Cyclic nucleotide-monophosphate binding domain AK40_4064 SM00421 helix_turn_helix, Lux Regulon AK40_4064 SM00448 cheY-homologous receiver domain AK40_4065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AK40_4067 SM00267 diguanylate cyclase AK40_4070 SM00448 cheY-homologous receiver domain AK40_4070 SM00850 LytTr DNA-binding domain AK40_4076 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_4081 SM00382 ATPases associated with a variety of cellular activities AK40_4092 SM00448 cheY-homologous receiver domain AK40_4092 SM00850 LytTr DNA-binding domain AK40_4093 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AK40_4093 SM00387 Histidine kinase-like ATPases AK40_41 SM00382 ATPases associated with a variety of cellular activities AK40_4104 SM00487 DEAD-like helicases superfamily AK40_4104 SM00490 helicase superfamily c-terminal domain AK40_4106 SM01240 AK40_4106 AK40_4110 SM00507 HNH nucleases AK40_4113 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AK40_4114 SM00849 Metallo-beta-lactamase superfamily AK40_4117 SM00091 PAS domain AK40_4117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4117 SM00387 Histidine kinase-like ATPases AK40_4117 SM00388 His Kinase A (phosphoacceptor) domain AK40_4118 SM00448 cheY-homologous receiver domain AK40_4118 SM00862 Transcriptional regulatory protein, C terminal AK40_4123 SM00788 Adenylosuccinate synthetase AK40_4126 SM00267 diguanylate cyclase AK40_4135 SM00470 ParB-like nuclease domain AK40_4137 SM00470 ParB-like nuclease domain AK40_4139 SM01228 AK40_4139 AK40_414 SM00421 helix_turn_helix, Lux Regulon AK40_414 SM00448 cheY-homologous receiver domain AK40_4141 SM00393 Putative single-stranded nucleic acids-binding domain AK40_4141 SM01245 AK40_4141 AK40_4145 SM00382 ATPases associated with a variety of cellular activities AK40_4145 SM00760 Bacterial dnaA protein helix-turn-helix domain AK40_4146 SM00480 DNA polymerase III beta subunit AK40_4149 SM00387 Histidine kinase-like ATPases AK40_4149 SM00433 TopoisomeraseII AK40_4150 SM00434 DNA Topoisomerase IV AK40_4158 SM00116 Domain in cystathionine beta-synthase and other proteins. AK40_4158 SM01240 AK40_4158 AK40_4159 SM00936 Penicillin-binding protein 5, C-terminal domain AK40_416 SM00382 ATPases associated with a variety of cellular activities AK40_4169 SM00382 ATPases associated with a variety of cellular activities AK40_4171 SM00493 AK40_4171 AK40_4189 SM00966 SpoVT / AbrB like domain AK40_419 SM00155 Phospholipase D. Active site motifs. AK40_4192 SM00493 AK40_4192 AK40_4193 SM00650 Ribosomal RNA adenine dimethylases AK40_4202 SM01400 AK40_4202 AK40_4205 SM00487 DEAD-like helicases superfamily AK40_4205 SM00490 helicase superfamily c-terminal domain AK40_4205 SM00982 AK40_4205 AK40_4205 SM01058 CarD-like/TRCF domain AK40_4206 SM00966 SpoVT / AbrB like domain AK40_4209 SM00363 S4 RNA-binding domain AK40_4213 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_4216 SM00331 Sigma factor PP2C-like phosphatases AK40_4216 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AK40_4217 SM00977 TilS substrate C-terminal domain AK40_4219 SM00382 ATPases associated with a variety of cellular activities AK40_4227 SM00905 Dihydroneopterin aldolase AK40_4229 SM00530 Helix-turn-helix XRE-family like proteins AK40_423 SM00919 Malic enzyme, NAD binding domain AK40_423 SM01274 AK40_423 AK40_4239 SM00382 ATPases associated with a variety of cellular activities AK40_4239 SM01086 C-terminal, D2-small domain, of ClpB protein AK40_424 SM00387 Histidine kinase-like ATPases AK40_4240 SM00382 ATPases associated with a variety of cellular activities AK40_4242 SM00670 Large family of predicted nucleotide-binding domains AK40_4247 SM00840 AK40_4247 AK40_4248 SM00535 Ribonuclease III family AK40_4249 SM00967 RNA 2'-O ribose methyltransferase substrate binding AK40_425 SM00448 cheY-homologous receiver domain AK40_4251 SM00421 helix_turn_helix, Lux Regulon AK40_4253 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AK40_4254 SM00649 Ribosomal protein L11/L12 AK40_426 SM00487 DEAD-like helicases superfamily AK40_426 SM00490 helicase superfamily c-terminal domain AK40_4260 SM00663 RNA polymerase I subunit A N-terminus AK40_4264 SM00838 Elongation factor G C-terminus AK40_4264 SM00889 Elongation factor G, domain IV AK40_4266 SM01403 AK40_4266 AK40_4270 SM01382 AK40_4270 AK40_4270 SM01383 AK40_4270 AK40_4273 SM00322 K homology RNA-binding domain AK40_4277 SM01374 AK40_4277 AK40_4278 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AK40_429 SM00530 Helix-turn-helix XRE-family like proteins AK40_4290 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_4294 SM00662 RNA polymerases D AK40_4296 SM00382 ATPases associated with a variety of cellular activities AK40_4297 SM00382 ATPases associated with a variety of cellular activities AK40_4303 SM00646 AK40_4303 AK40_4306 SM01251 AK40_4306 AK40_4330 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_4330 SM00895 AK40_4330 AK40_4333 SM01350 AK40_4333 AK40_4342 SM00382 ATPases associated with a variety of cellular activities AK40_4342 SM00930 AK40_4342 AK40_4344 SM00829 Enoylreductase AK40_435 SM00646 AK40_435 AK40_4353 SM00382 ATPases associated with a variety of cellular activities AK40_4354 SM00382 ATPases associated with a variety of cellular activities AK40_4357 SM00342 helix_turn_helix, arabinose operon control protein AK40_436 SM00047 Lysozyme subfamily 2 AK40_4376 SM00563 Phosphate acyltransferases AK40_4378 SM00354 helix_turn _helix lactose operon repressor AK40_4389 SM00382 ATPases associated with a variety of cellular activities AK40_4395 SM00382 ATPases associated with a variety of cellular activities AK40_4396 SM00382 ATPases associated with a variety of cellular activities AK40_4410 SM00487 DEAD-like helicases superfamily AK40_4410 SM00490 helicase superfamily c-terminal domain AK40_4415 SM01005 Alanine racemase, C-terminal domain AK40_4418 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_4418 SM00732 Likely ribonuclease with RNase H fold. AK40_4419 SM00731 SprT homologues. AK40_4441 SM00382 ATPases associated with a variety of cellular activities AK40_4442 SM00881 CoA binding domain AK40_4445 SM00883 Chaperonin 10 Kd subunit AK40_4448 SM00860 SMI1 / KNR4 family AK40_4451 SM00448 cheY-homologous receiver domain AK40_4451 SM00862 Transcriptional regulatory protein, C terminal AK40_4452 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4452 SM00387 Histidine kinase-like ATPases AK40_4452 SM00388 His Kinase A (phosphoacceptor) domain AK40_4470 SM00382 ATPases associated with a variety of cellular activities AK40_4471 SM00387 Histidine kinase-like ATPases AK40_4471 SM00388 His Kinase A (phosphoacceptor) domain AK40_4472 SM00448 cheY-homologous receiver domain AK40_4472 SM00862 Transcriptional regulatory protein, C terminal AK40_4483 SM01001 AIR carboxylase AK40_4485 SM00998 Adenylosuccinate lyase C-terminus AK40_4488 SM01211 AK40_4488 AK40_4493 SM00798 AICARFT/IMPCHase bienzyme AK40_4493 SM00851 MGS-like domain AK40_4494 SM01209 AK40_4494 AK40_4494 SM01210 AK40_4494 AK40_4496 SM00244 prohibitin homologues AK40_45 SM00344 helix_turn_helix ASNC type AK40_4500 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AK40_4500 SM00292 breast cancer carboxy-terminal domain AK40_4500 SM00532 Ligase N family AK40_4506 SM00382 ATPases associated with a variety of cellular activities AK40_4506 SM00930 AK40_4506 AK40_4512 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_4516 SM00845 GatB domain AK40_4517 SM00046 Diacylglycerol kinase catalytic domain (presumed) AK40_4520 SM00382 ATPases associated with a variety of cellular activities AK40_4529 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AK40_4529 SM00387 Histidine kinase-like ATPases AK40_4529 SM00388 His Kinase A (phosphoacceptor) domain AK40_4533 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AK40_4543 SM01007 Class II Aldolase and Adducin N-terminal domain AK40_456 SM00422 helix_turn_helix, mercury resistance AK40_4564 SM00062 Bacterial periplasmic substrate-binding proteins AK40_4564 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK40_4565 SM00382 ATPases associated with a variety of cellular activities AK40_4566 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_4566 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4567 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_4567 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4568 SM00642 Alpha-amylase domain AK40_4572 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK40_4572 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK40_4572 SM00493 AK40_4572 AK40_4576 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_4576 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4580 SM00382 ATPases associated with a variety of cellular activities AK40_4581 SM00382 ATPases associated with a variety of cellular activities AK40_4582 SM00060 Fibronectin type 3 domain AK40_4582 SM00636 AK40_4582 AK40_4582 SM00637 AK40_4582 AK40_4590 SM00530 Helix-turn-helix XRE-family like proteins AK40_4596 SM00946 Prolyl-tRNA synthetase, C-terminal AK40_4605 SM00831 Cation transporter/ATPase, N-terminus AK40_4607 SM00226 Low molecular weight phosphatase family AK40_4625 SM00478 endonuclease III AK40_4629 SM00382 ATPases associated with a variety of cellular activities AK40_4633 SM00530 Helix-turn-helix XRE-family like proteins AK40_4643 SM00984 UDP binding domain AK40_4659 SM00478 endonuclease III AK40_4659 SM00525 AK40_4659 AK40_4665 SM00382 ATPases associated with a variety of cellular activities AK40_4669 SM00382 ATPases associated with a variety of cellular activities AK40_470 SM00854 Bacterial capsule synthesis protein PGA_cap AK40_4702 SM00382 ATPases associated with a variety of cellular activities AK40_4709 SM00567 E-Z type HEAT repeats AK40_4712 SM00052 Putative diguanylate phosphodiesterase AK40_4712 SM00091 PAS domain AK40_4712 SM00267 diguanylate cyclase AK40_4714 SM00763 PrkA AAA domain AK40_4716 SM00364 Leucine-rich repeats, bacterial type AK40_4716 SM00365 Leucine-rich repeat, SDS22-like subfamily AK40_4716 SM00369 Leucine-rich repeats, typical (most populated) subfamily AK40_4716 SM00725 NEAr Transporter domain AK40_4721 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AK40_4723 SM00244 prohibitin homologues AK40_4724 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_4724 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4725 SM00091 PAS domain AK40_4725 SM00387 Histidine kinase-like ATPases AK40_4726 SM00448 cheY-homologous receiver domain AK40_4730 SM00248 ankyrin repeats AK40_4732 SM00448 cheY-homologous receiver domain AK40_4732 SM00862 Transcriptional regulatory protein, C terminal AK40_4733 SM00387 Histidine kinase-like ATPases AK40_4733 SM00388 His Kinase A (phosphoacceptor) domain AK40_4736 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_4736 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4737 SM00387 Histidine kinase-like ATPases AK40_4738 SM00448 cheY-homologous receiver domain AK40_4740 SM00919 Malic enzyme, NAD binding domain AK40_4740 SM01274 AK40_4740 AK40_4743 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_4745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4745 SM00387 Histidine kinase-like ATPases AK40_4745 SM00388 His Kinase A (phosphoacceptor) domain AK40_4746 SM00448 cheY-homologous receiver domain AK40_4746 SM00862 Transcriptional regulatory protein, C terminal AK40_4750 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AK40_4750 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AK40_4753 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AK40_4753 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AK40_4755 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_4758 SM00530 Helix-turn-helix XRE-family like proteins AK40_4759 SM00028 Tetratricopeptide repeats AK40_4769 SM01091 Transporter associated domain AK40_4772 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_4778 SM00382 ATPases associated with a variety of cellular activities AK40_478 SM00850 LytTr DNA-binding domain AK40_4782 SM00327 von Willebrand factor (vWF) type A domain AK40_4783 SM00382 ATPases associated with a variety of cellular activities AK40_4784 SM00155 Phospholipase D. Active site motifs. AK40_4786 SM00052 Putative diguanylate phosphodiesterase AK40_4786 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AK40_4786 SM00091 PAS domain AK40_4786 SM00267 diguanylate cyclase AK40_4788 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_4788 SM00866 AK40_4788 AK40_4790 SM00642 Alpha-amylase domain AK40_4794 SM00387 Histidine kinase-like ATPases AK40_4795 SM00421 helix_turn_helix, Lux Regulon AK40_4795 SM00448 cheY-homologous receiver domain AK40_4801 SM00382 ATPases associated with a variety of cellular activities AK40_4802 SM00062 Bacterial periplasmic substrate-binding proteins AK40_4802 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK40_4812 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_4812 SM00387 Histidine kinase-like ATPases AK40_4812 SM00388 His Kinase A (phosphoacceptor) domain AK40_4813 SM00448 cheY-homologous receiver domain AK40_4813 SM00862 Transcriptional regulatory protein, C terminal AK40_4821 SM00382 ATPases associated with a variety of cellular activities AK40_4822 SM00382 ATPases associated with a variety of cellular activities AK40_4824 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_4826 SM00354 helix_turn _helix lactose operon repressor AK40_4829 SM00382 ATPases associated with a variety of cellular activities AK40_4835 SM00829 Enoylreductase AK40_4837 SM00770 Zinc dependent phospholipase C (alpha toxin) AK40_484 SM00860 SMI1 / KNR4 family AK40_4844 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_4846 SM00530 Helix-turn-helix XRE-family like proteins AK40_4856 SM00530 Helix-turn-helix XRE-family like proteins AK40_4874 SM00899 AK40_4874 AK40_490 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_4904 SM00116 Domain in cystathionine beta-synthase and other proteins. AK40_4907 SM00287 Bacterial SH3 domain homologues AK40_4909 SM00382 ATPases associated with a variety of cellular activities AK40_492 SM00448 cheY-homologous receiver domain AK40_492 SM00862 Transcriptional regulatory protein, C terminal AK40_4926 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_493 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_493 SM00387 Histidine kinase-like ATPases AK40_493 SM00388 His Kinase A (phosphoacceptor) domain AK40_4931 SM00382 ATPases associated with a variety of cellular activities AK40_4938 SM00640 Glycosyl hydrolases family 32 AK40_4940 SM00354 helix_turn _helix lactose operon repressor AK40_4952 SM00450 Rhodanese Homology Domain AK40_4954 SM00450 Rhodanese Homology Domain AK40_4955 SM00450 Rhodanese Homology Domain AK40_4955 SM00849 Metallo-beta-lactamase superfamily AK40_4957 SM00450 Rhodanese Homology Domain AK40_4958 SM00450 Rhodanese Homology Domain AK40_4963 SM00829 Enoylreductase AK40_4973 SM00287 Bacterial SH3 domain homologues AK40_4975 SM00382 ATPases associated with a variety of cellular activities AK40_498 SM00450 Rhodanese Homology Domain AK40_4987 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AK40_5 SM00382 ATPases associated with a variety of cellular activities AK40_5008 SM00344 helix_turn_helix ASNC type AK40_5019 SM01060 AK40_5019 AK40_5025 SM00382 ATPases associated with a variety of cellular activities AK40_5026 SM00382 ATPases associated with a variety of cellular activities AK40_5027 SM00062 Bacterial periplasmic substrate-binding proteins AK40_5027 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AK40_5029 SM00382 ATPases associated with a variety of cellular activities AK40_5043 SM00644 AK40_5043 AK40_5044 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_5052 SM00957 SecA DEAD-like domain AK40_5052 SM00958 SecA preprotein cross-linking domain AK40_5066 SM00646 AK40_5066 AK40_5069 SM00342 helix_turn_helix, arabinose operon control protein AK40_5069 SM00871 Bacterial transcription activator, effector binding domain AK40_507 SM00382 ATPases associated with a variety of cellular activities AK40_5085 SM00382 ATPases associated with a variety of cellular activities AK40_5086 SM00382 ATPases associated with a variety of cellular activities AK40_5094 SM00860 SMI1 / KNR4 family AK40_5097 SM00091 PAS domain AK40_5097 SM00387 Histidine kinase-like ATPases AK40_5098 SM00448 cheY-homologous receiver domain AK40_5103 SM00490 helicase superfamily c-terminal domain AK40_511 SM00448 cheY-homologous receiver domain AK40_511 SM00862 Transcriptional regulatory protein, C terminal AK40_5110 SM00487 DEAD-like helicases superfamily AK40_5110 SM00490 helicase superfamily c-terminal domain AK40_5119 SM00422 helix_turn_helix, mercury resistance AK40_512 SM00387 Histidine kinase-like ATPases AK40_512 SM00388 His Kinase A (phosphoacceptor) domain AK40_514 SM01133 AK40_514 AK40_5144 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_5153 SM01120 AK40_5153 AK40_516 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AK40_5160 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_5164 SM00460 Transglutaminase/protease-like homologues AK40_5177 SM00331 Sigma factor PP2C-like phosphatases AK40_5177 SM00448 cheY-homologous receiver domain AK40_5178 SM00138 Methyltransferase, chemotaxis proteins AK40_5179 SM00387 Histidine kinase-like ATPases AK40_5179 SM00388 His Kinase A (phosphoacceptor) domain AK40_5179 SM00448 cheY-homologous receiver domain AK40_5186 SM00829 Enoylreductase AK40_5194 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_5201 SM00028 Tetratricopeptide repeats AK40_5206 SM00530 Helix-turn-helix XRE-family like proteins AK40_5218 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_522 SM01011 Aminopeptidase P, N-terminal domain AK40_5227 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_5230 SM00382 ATPases associated with a variety of cellular activities AK40_524 SM00287 Bacterial SH3 domain homologues AK40_526 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK40_526 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK40_526 SM00493 AK40_526 AK40_5264 SM00354 helix_turn _helix lactose operon repressor AK40_5266 SM00849 Metallo-beta-lactamase superfamily AK40_5271 SM00725 NEAr Transporter domain AK40_5277 SM00860 SMI1 / KNR4 family AK40_5284 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_5287 SM00342 helix_turn_helix, arabinose operon control protein AK40_5287 SM00871 Bacterial transcription activator, effector binding domain AK40_5288 SM00387 Histidine kinase-like ATPases AK40_5288 SM00388 His Kinase A (phosphoacceptor) domain AK40_5289 SM00448 cheY-homologous receiver domain AK40_5289 SM00862 Transcriptional regulatory protein, C terminal AK40_5301 SM00357 Cold shock protein domain AK40_5325 SM01060 AK40_5325 AK40_5327 SM00642 Alpha-amylase domain AK40_5328 SM00530 Helix-turn-helix XRE-family like proteins AK40_5330 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_5339 SM00382 ATPases associated with a variety of cellular activities AK40_5339 SM01086 C-terminal, D2-small domain, of ClpB protein AK40_5345 SM00825 Beta-ketoacyl synthase AK40_5353 SM00382 ATPases associated with a variety of cellular activities AK40_5354 SM00382 ATPases associated with a variety of cellular activities AK40_5361 SM00155 Phospholipase D. Active site motifs. AK40_5367 SM01118 AK40_5367 AK40_5369 SM00954 Region found in RelA / SpoT proteins AK40_5401 SM00635 Bacterial Ig-like domain 2 AK40_5422 SM00861 Transketolase, pyrimidine binding domain AK40_5423 SM00530 Helix-turn-helix XRE-family like proteins AK40_545 SM00833 Cobalamin synthesis protein cobW C-terminal domain AK40_5450 SM00382 ATPases associated with a variety of cellular activities AK40_5461 SM00530 Helix-turn-helix XRE-family like proteins AK40_5464 SM00382 ATPases associated with a variety of cellular activities AK40_5468 SM00014 Acid phosphatase homologues AK40_5478 SM00448 cheY-homologous receiver domain AK40_5478 SM00862 Transcriptional regulatory protein, C terminal AK40_5479 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_5479 SM00387 Histidine kinase-like ATPases AK40_5479 SM00388 His Kinase A (phosphoacceptor) domain AK40_5480 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_5480 SM00895 AK40_5480 AK40_5494 SM00822 AK40_5494 AK40_5512 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_552 SM00382 ATPases associated with a variety of cellular activities AK40_5529 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK40_5529 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK40_5529 SM00493 AK40_5529 AK40_553 SM00382 ATPases associated with a variety of cellular activities AK40_5530 SM00382 ATPases associated with a variety of cellular activities AK40_5539 SM00507 HNH nucleases AK40_5550 SM00480 DNA polymerase III beta subunit AK40_5567 SM00564 beta-propeller repeat AK40_560 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_5605 SM00382 ATPases associated with a variety of cellular activities AK40_5623 SM00530 Helix-turn-helix XRE-family like proteins AK40_564 SM00382 ATPases associated with a variety of cellular activities AK40_5642 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_565 SM00382 ATPases associated with a variety of cellular activities AK40_5673 SM00387 Histidine kinase-like ATPases AK40_5674 SM00448 cheY-homologous receiver domain AK40_5675 SM00530 Helix-turn-helix XRE-family like proteins AK40_5681 SM00382 ATPases associated with a variety of cellular activities AK40_5704 SM00530 Helix-turn-helix XRE-family like proteins AK40_5706 SM00342 helix_turn_helix, arabinose operon control protein AK40_5706 SM00871 Bacterial transcription activator, effector binding domain AK40_571 SM00287 Bacterial SH3 domain homologues AK40_5716 SM00318 Staphylococcal nuclease homologues AK40_573 SM00382 ATPases associated with a variety of cellular activities AK40_5734 SM00914 AK40_5734 AK40_574 SM00448 cheY-homologous receiver domain AK40_574 SM00862 Transcriptional regulatory protein, C terminal AK40_5741 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_5742 SM00316 Ribosomal protein S1-like RNA-binding domain AK40_575 SM00387 Histidine kinase-like ATPases AK40_575 SM00388 His Kinase A (phosphoacceptor) domain AK40_5753 SM00966 SpoVT / AbrB like domain AK40_5774 SM00857 Resolvase, N terminal domain AK40_5779 SM00422 helix_turn_helix, mercury resistance AK40_5803 SM00382 ATPases associated with a variety of cellular activities AK40_5812 SM00382 ATPases associated with a variety of cellular activities AK40_5830 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_5836 SM00460 Transglutaminase/protease-like homologues AK40_5841 SM00758 AK40_5841 AK40_5859 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_5859 SM00387 Histidine kinase-like ATPases AK40_5859 SM00388 His Kinase A (phosphoacceptor) domain AK40_5860 SM00448 cheY-homologous receiver domain AK40_5860 SM00862 Transcriptional regulatory protein, C terminal AK40_5864 SM00644 AK40_5864 AK40_5875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_5879 SM00318 Staphylococcal nuclease homologues AK40_5891 SM00487 DEAD-like helicases superfamily AK40_5909 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AK40_591 SM00448 cheY-homologous receiver domain AK40_591 SM00862 Transcriptional regulatory protein, C terminal AK40_592 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_592 SM00387 Histidine kinase-like ATPases AK40_592 SM00388 His Kinase A (phosphoacceptor) domain AK40_5921 SM00480 DNA polymerase III beta subunit AK40_5934 SM00843 AK40_5934 AK40_5964 SM01061 CAT RNA binding domain AK40_6000 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_6003 SM00854 Bacterial capsule synthesis protein PGA_cap AK40_6010 SM00530 Helix-turn-helix XRE-family like proteins AK40_6017 SM00860 SMI1 / KNR4 family AK40_6020 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_6024 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_6026 SM00047 Lysozyme subfamily 2 AK40_6027 SM00530 Helix-turn-helix XRE-family like proteins AK40_6030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_6030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_6034 SM00530 Helix-turn-helix XRE-family like proteins AK40_6037 SM00382 ATPases associated with a variety of cellular activities AK40_6050 SM00857 Resolvase, N terminal domain AK40_606 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_6071 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_611 SM00460 Transglutaminase/protease-like homologues AK40_6128 SM00487 DEAD-like helicases superfamily AK40_6128 SM00490 helicase superfamily c-terminal domain AK40_6136 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AK40_6136 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AK40_6136 SM00493 AK40_6136 AK40_6157 SM00465 GIY-YIG type nucleases (URI domain) AK40_6158 SM00857 Resolvase, N terminal domain AK40_616 SM00966 SpoVT / AbrB like domain AK40_618 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_6190 SM01040 BRO family, N-terminal domain AK40_6191 SM00530 Helix-turn-helix XRE-family like proteins AK40_6192 SM00530 Helix-turn-helix XRE-family like proteins AK40_6196 SM00530 Helix-turn-helix XRE-family like proteins AK40_6211 SM00422 helix_turn_helix, mercury resistance AK40_6224 SM00646 AK40_6224 AK40_625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AK40_625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_6272 SM00530 Helix-turn-helix XRE-family like proteins AK40_6277 SM00530 Helix-turn-helix XRE-family like proteins AK40_6285 SM00530 Helix-turn-helix XRE-family like proteins AK40_6286 SM00646 AK40_6286 AK40_6312 SM00028 Tetratricopeptide repeats AK40_637 SM00833 Cobalamin synthesis protein cobW C-terminal domain AK40_651 SM00855 Phosphoglycerate mutase family AK40_661 SM00155 Phospholipase D. Active site motifs. AK40_666 SM01091 Transporter associated domain AK40_680 SM00244 prohibitin homologues AK40_682 SM00346 helix_turn_helix isocitrate lyase regulation AK40_689 SM00859 Semialdehyde dehydrogenase, NAD binding domain AK40_69 SM00347 helix_turn_helix multiple antibiotic resistance protein AK40_693 SM00855 Phosphoglycerate mutase family AK40_696 SM01005 Alanine racemase, C-terminal domain AK40_702 SM00345 helix_turn_helix gluconate operon transcriptional repressor AK40_732 SM00487 DEAD-like helicases superfamily AK40_732 SM00490 helicase superfamily c-terminal domain AK40_736 SM00829 Enoylreductase AK40_740 SM00849 Metallo-beta-lactamase superfamily AK40_743 SM00460 Transglutaminase/protease-like homologues AK40_748 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AK40_752 SM00100 Cyclic nucleotide-monophosphate binding domain AK40_752 SM00419 helix_turn_helix, cAMP Regulatory protein AK40_753 SM00729 Elongator protein 3, MiaB family, Radical SAM AK40_755 SM00852 Probable molybdopterin binding domain AK40_767 SM00894 Excalibur calcium-binding domain AK40_785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AK40_786 SM00382 ATPases associated with a variety of cellular activities AK40_792 SM00567 E-Z type HEAT repeats AK40_792 SM00932 Scaffold protein Nfu/NifU N terminal AK40_796 SM00836 DALR anticodon binding domain AK40_796 SM01016 Arginyl tRNA synthetase N terminal dom AK40_799 SM00028 Tetratricopeptide repeats AK40_805 SM00327 von Willebrand factor (vWF) type A domain AK40_808 SM00382 ATPases associated with a variety of cellular activities AK40_810 SM00028 Tetratricopeptide repeats AK40_817 SM00857 Resolvase, N terminal domain AK40_83 SM00917 LeuA allosteric (dimerisation) domain AK40_833 SM00448 cheY-homologous receiver domain AK40_833 SM00862 Transcriptional regulatory protein, C terminal AK40_834 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AK40_834 SM00387 Histidine kinase-like ATPases AK40_834 SM00388 His Kinase A (phosphoacceptor) domain AK40_84 SM01329 AK40_84 AK40_849 SM00382 ATPases associated with a variety of cellular activities AK40_862 SM00563 Phosphate acyltransferases AK40_874 SM00014 Acid phosphatase homologues AK40_884 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AK40_885 SM00421 helix_turn_helix, Lux Regulon AK40_885 SM00448 cheY-homologous receiver domain AK40_887 SM00829 Enoylreductase AK40_898 SM00382 ATPases associated with a variety of cellular activities AK40_906 SM01091 Transporter associated domain AK40_909 SM00387 Histidine kinase-like ATPases AK40_909 SM00388 His Kinase A (phosphoacceptor) domain AK40_912 SM00882 Coenzyme A transferase AK40_913 SM00882 Coenzyme A transferase AK40_916 SM00382 ATPases associated with a variety of cellular activities AK40_924 SM00219 Tyrosine kinase, catalytic domain AK40_927 SM00014 Acid phosphatase homologues AK40_935 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AK40_970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AK40_977 SM00823 Phosphopantetheine attachment site AK40_977 SM00824 Thioesterase AK40_978 SM00923 MbtH-like protein AK40_982 SM00411 bacterial (prokaryotic) histone like domain AK40_990 SM00363 S4 RNA-binding domain AK40_991 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AK40_993 SM00382 ATPases associated with a variety of cellular activities