NT98_1001 SM00257 Lysin motif NT98_1004 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_1008 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NT98_1009 SM00382 ATPases associated with a variety of cellular activities NT98_1013 SM01323 NT98_1013 NT98_102 SM00903 Flavin reductase like domain NT98_1022 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_1022 SM00954 Region found in RelA / SpoT proteins NT98_1029 SM00382 ATPases associated with a variety of cellular activities NT98_1030 SM00382 ATPases associated with a variety of cellular activities NT98_1034 SM00028 Tetratricopeptide repeats NT98_1041 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NT98_1043 SM00732 Likely ribonuclease with RNase H fold. NT98_105 SM00226 Low molecular weight phosphatase family NT98_1062 SM00382 ATPases associated with a variety of cellular activities NT98_1067 SM00530 Helix-turn-helix XRE-family like proteins NT98_1077 SM00855 Phosphoglycerate mutase family NT98_1090 SM00098 Alkaline phosphatase homologues NT98_1092 SM00954 Region found in RelA / SpoT proteins NT98_11 SM00267 diguanylate cyclase NT98_1103 SM01103 NT98_1103 NT98_1105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_1109 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NT98_1111 SM00849 Metallo-beta-lactamase superfamily NT98_1117 SM00838 Elongation factor G C-terminus NT98_1119 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_1123 SM00271 DnaJ molecular chaperone homology domain NT98_1126 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_1132 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_1139 SM00116 Domain in cystathionine beta-synthase and other proteins. NT98_1141 SM00400 zinc finger NT98_1141 SM00493 NT98_1141 NT98_1141 SM00766 DNA primase DnaG DnaB-binding NT98_1148 SM00487 DEAD-like helicases superfamily NT98_1148 SM00490 helicase superfamily c-terminal domain NT98_1149 SM00518 AP endonuclease family 2 NT98_1152 SM00382 ATPases associated with a variety of cellular activities NT98_1165 SM00382 ATPases associated with a variety of cellular activities NT98_1173 SM00849 Metallo-beta-lactamase superfamily NT98_1175 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_118 SM00382 ATPases associated with a variety of cellular activities NT98_1180 SM01018 B12 binding domain NT98_1191 SM00382 ATPases associated with a variety of cellular activities NT98_1201 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. NT98_1210 SM00487 DEAD-like helicases superfamily NT98_1210 SM00490 helicase superfamily c-terminal domain NT98_1216 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_1217 SM00382 ATPases associated with a variety of cellular activities NT98_122 SM00052 Putative diguanylate phosphodiesterase NT98_122 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NT98_122 SM00091 PAS domain NT98_122 SM00267 diguanylate cyclase NT98_1227 SM00354 helix_turn _helix lactose operon repressor NT98_1229 SM00450 Rhodanese Homology Domain NT98_1237 SM00529 Helix-turn-helix diphteria tox regulatory element NT98_1244 SM00841 Elongation factor P, C-terminal NT98_1244 SM01185 NT98_1244 NT98_1248 SM00382 ATPases associated with a variety of cellular activities NT98_1258 SM00878 Biotin carboxylase C-terminal domain NT98_1265 SM00861 Transketolase, pyrimidine binding domain NT98_1266 SM00363 S4 RNA-binding domain NT98_1269 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NT98_1270 SM00448 cheY-homologous receiver domain NT98_1284 SM00530 Helix-turn-helix XRE-family like proteins NT98_1287 SM00843 NT98_1287 NT98_1290 SM00864 Tubulin/FtsZ family, GTPase domain NT98_13 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NT98_1335 SM00725 NEAr Transporter domain NT98_1339 SM00014 Acid phosphatase homologues NT98_1343 SM00984 UDP binding domain NT98_1362 SM00857 Resolvase, N terminal domain NT98_1368 SM00758 NT98_1368 NT98_1369 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_1387 SM00860 SMI1 / KNR4 family NT98_139 SM00850 LytTr DNA-binding domain NT98_1391 SM00954 Region found in RelA / SpoT proteins NT98_1397 SM00028 Tetratricopeptide repeats NT98_14 SM00421 helix_turn_helix, Lux Regulon NT98_14 SM00448 cheY-homologous receiver domain NT98_140 SM00382 ATPases associated with a variety of cellular activities NT98_1400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_1407 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NT98_1407 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NT98_1407 SM00493 NT98_1407 NT98_1416 SM00507 HNH nucleases NT98_1417 SM00487 DEAD-like helicases superfamily NT98_1435 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain NT98_1473 SM00091 PAS domain NT98_1473 SM00382 ATPases associated with a variety of cellular activities NT98_1475 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NT98_1479 SM00861 Transketolase, pyrimidine binding domain NT98_1486 SM00062 Bacterial periplasmic substrate-binding proteins NT98_1486 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NT98_1488 SM00382 ATPases associated with a variety of cellular activities NT98_1497 SM00831 Cation transporter/ATPase, N-terminus NT98_1499 SM00849 Metallo-beta-lactamase superfamily NT98_1503 SM00849 Metallo-beta-lactamase superfamily NT98_1506 SM00859 Semialdehyde dehydrogenase, NAD binding domain NT98_151 SM00382 ATPases associated with a variety of cellular activities NT98_1513 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_1523 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_1523 SM00876 Biotin and Thiamin Synthesis associated domain NT98_1529 SM00704 CDGSH-type zinc finger. Function unknown. NT98_1533 SM00354 helix_turn _helix lactose operon repressor NT98_1552 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain NT98_1556 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_1560 SM00382 ATPases associated with a variety of cellular activities NT98_1561 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_1562 SM00936 Penicillin-binding protein 5, C-terminal domain NT98_1564 SM00387 Histidine kinase-like ATPases NT98_158 SM00448 cheY-homologous receiver domain NT98_158 SM00862 Transcriptional regulatory protein, C terminal NT98_1583 SM00849 Metallo-beta-lactamase superfamily NT98_1586 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_1586 SM00866 NT98_1586 NT98_1588 SM01061 CAT RNA binding domain NT98_159 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_159 SM00387 Histidine kinase-like ATPases NT98_159 SM00388 His Kinase A (phosphoacceptor) domain NT98_1595 SM00267 diguanylate cyclase NT98_16 SM00100 Cyclic nucleotide-monophosphate binding domain NT98_1601 SM01007 Class II Aldolase and Adducin N-terminal domain NT98_1618 SM00382 ATPases associated with a variety of cellular activities NT98_1625 SM00382 ATPases associated with a variety of cellular activities NT98_1626 SM00642 Alpha-amylase domain NT98_1627 SM00642 Alpha-amylase domain NT98_1631 SM00354 helix_turn _helix lactose operon repressor NT98_1634 SM00387 Histidine kinase-like ATPases NT98_1634 SM00388 His Kinase A (phosphoacceptor) domain NT98_1647 SM00267 diguanylate cyclase NT98_165 SM00382 ATPases associated with a variety of cellular activities NT98_1656 SM00052 Putative diguanylate phosphodiesterase NT98_1669 SM00849 Metallo-beta-lactamase superfamily NT98_1675 SM00861 Transketolase, pyrimidine binding domain NT98_1691 SM00838 Elongation factor G C-terminus NT98_1696 SM00670 Large family of predicted nucleotide-binding domains NT98_1700 SM00878 Biotin carboxylase C-terminal domain NT98_1712 SM00855 Phosphoglycerate mutase family NT98_1720 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NT98_1724 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains NT98_1730 SM00740 NT98_1730 NT98_1731 SM00740 NT98_1731 NT98_1739 SM00842 Cell division protein FtsA NT98_1740 SM00864 Tubulin/FtsZ family, GTPase domain NT98_1740 SM00865 Tubulin/FtsZ family, C-terminal domain NT98_1749 SM00363 S4 RNA-binding domain NT98_175 SM00487 DEAD-like helicases superfamily NT98_175 SM00490 helicase superfamily c-terminal domain NT98_1754 SM00363 S4 RNA-binding domain NT98_1759 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain NT98_1760 SM00851 MGS-like domain NT98_1760 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NT98_1760 SM01209 NT98_1760 NT98_1763 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family NT98_1772 SM00831 Cation transporter/ATPase, N-terminus NT98_1775 SM00072 Guanylate kinase homologues. NT98_1776 SM01409 NT98_1776 NT98_1778 SM00487 DEAD-like helicases superfamily NT98_1778 SM00490 helicase superfamily c-terminal domain NT98_1783 SM00331 Sigma factor PP2C-like phosphatases NT98_1783 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain NT98_1784 SM00220 Serine/Threonine protein kinases, catalytic domain NT98_1784 SM00740 NT98_1784 NT98_1787 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain NT98_1790 SM01120 NT98_1790 NT98_1790 SM01121 NT98_1790 NT98_1791 SM00487 DEAD-like helicases superfamily NT98_1791 SM00490 helicase superfamily c-terminal domain NT98_1794 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. NT98_1795 SM00822 NT98_1795 NT98_1797 SM00358 Double-stranded RNA binding motif NT98_1797 SM00535 Ribonuclease III family NT98_1798 SM00968 SMC proteins Flexible Hinge Domain NT98_1799 SM00382 ATPases associated with a variety of cellular activities NT98_1799 SM00962 SRP54-type protein, GTPase domain NT98_1799 SM00963 SRP54-type protein, helical bundle domain NT98_1801 SM00382 ATPases associated with a variety of cellular activities NT98_1801 SM00962 SRP54-type protein, GTPase domain NT98_1801 SM00963 SRP54-type protein, helical bundle domain NT98_181 SM00287 Bacterial SH3 domain homologues NT98_1811 SM00881 CoA binding domain NT98_1813 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NT98_1813 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NT98_1813 SM00493 NT98_1813 NT98_1817 SM00382 ATPases associated with a variety of cellular activities NT98_1817 SM01086 C-terminal, D2-small domain, of ClpB protein NT98_1826 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NT98_1828 SM00479 NT98_1828 NT98_1828 SM00481 DNA polymerase alpha chain like domain NT98_1830 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_1830 SM00322 K homology RNA-binding domain NT98_1837 SM00904 Riboflavin kinase NT98_1838 SM01387 NT98_1838 NT98_1839 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_1839 SM00322 K homology RNA-binding domain NT98_1845 SM00857 Resolvase, N terminal domain NT98_1853 SM00859 Semialdehyde dehydrogenase, NAD binding domain NT98_1855 SM01130 NT98_1855 NT98_1856 SM00849 Metallo-beta-lactamase superfamily NT98_1859 SM00382 ATPases associated with a variety of cellular activities NT98_1859 SM00843 NT98_1859 NT98_1860 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_1860 SM00866 NT98_1860 NT98_1862 SM00382 ATPases associated with a variety of cellular activities NT98_187 SM00287 Bacterial SH3 domain homologues NT98_1872 SM00852 Probable molybdopterin binding domain NT98_1873 SM00382 ATPases associated with a variety of cellular activities NT98_1874 SM00322 K homology RNA-binding domain NT98_1874 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_1880 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_1883 SM00533 DNA-binding domain of DNA mismatch repair MUTS family NT98_1883 SM00534 ATPase domain of DNA mismatch repair MUTS family NT98_1884 SM00853 MutL C terminal dimerisation domain NT98_1884 SM01340 NT98_1884 NT98_1886 SM00382 ATPases associated with a variety of cellular activities NT98_1889 SM00448 cheY-homologous receiver domain NT98_1889 SM00862 Transcriptional regulatory protein, C terminal NT98_1890 SM00387 Histidine kinase-like ATPases NT98_1890 SM00388 His Kinase A (phosphoacceptor) domain NT98_1896 SM00257 Lysin motif NT98_1898 SM00148 Phospholipase C, catalytic domain (part); domain X NT98_1901 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_1901 SM00866 NT98_1901 NT98_1905 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_1915 SM00052 Putative diguanylate phosphodiesterase NT98_1915 SM00091 PAS domain NT98_1915 SM00267 diguanylate cyclase NT98_1921 SM00478 endonuclease III NT98_1923 SM00342 helix_turn_helix, arabinose operon control protein NT98_1928 SM00382 ATPases associated with a variety of cellular activities NT98_1935 SM00411 bacterial (prokaryotic) histone like domain NT98_1938 SM00636 NT98_1938 NT98_1944 SM00420 helix_turn_helix, Deoxyribose operon repressor NT98_1944 SM01134 NT98_1944 NT98_1947 SM00287 Bacterial SH3 domain homologues NT98_1955 SM00382 ATPases associated with a variety of cellular activities NT98_1960 SM00422 helix_turn_helix, mercury resistance NT98_1961 SM01230 NT98_1961 NT98_1971 SM00857 Resolvase, N terminal domain NT98_1974 SM00062 Bacterial periplasmic substrate-binding proteins NT98_1975 SM00382 ATPases associated with a variety of cellular activities NT98_1978 SM00861 Transketolase, pyrimidine binding domain NT98_1981 SM00382 ATPases associated with a variety of cellular activities NT98_1982 SM00382 ATPases associated with a variety of cellular activities NT98_1985 SM00644 NT98_1985 NT98_1994 SM00382 ATPases associated with a variety of cellular activities NT98_2 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_2012 SM01058 CarD-like/TRCF domain NT98_2019 SM00091 PAS domain NT98_2019 SM00387 Histidine kinase-like ATPases NT98_2019 SM00388 His Kinase A (phosphoacceptor) domain NT98_2022 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain NT98_2023 SM00644 NT98_2023 NT98_2023 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. NT98_2029 SM00530 Helix-turn-helix XRE-family like proteins NT98_2030 SM00382 ATPases associated with a variety of cellular activities NT98_2038 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NT98_2047 SM00382 ATPases associated with a variety of cellular activities NT98_2050 SM00479 NT98_2050 NT98_2054 SM00257 Lysin motif NT98_2054 SM00636 NT98_2054 NT98_2057 SM01207 NT98_2057 NT98_2060 SM00448 cheY-homologous receiver domain NT98_2060 SM00862 Transcriptional regulatory protein, C terminal NT98_2061 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NT98_2062 SM00881 CoA binding domain NT98_2063 SM00387 Histidine kinase-like ATPases NT98_2063 SM00433 TopoisomeraseII NT98_2064 SM00434 DNA Topoisomerase IV NT98_2067 SM00420 helix_turn_helix, Deoxyribose operon repressor NT98_2069 SM00382 ATPases associated with a variety of cellular activities NT98_2091 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NT98_2091 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NT98_2095 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_2098 SM00852 Probable molybdopterin binding domain NT98_2119 SM01022 NT98_2119 NT98_2124 SM00357 Cold shock protein domain NT98_2125 SM00479 NT98_2125 NT98_2131 SM00382 ATPases associated with a variety of cellular activities NT98_2132 SM00062 Bacterial periplasmic substrate-binding proteins NT98_2132 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NT98_2140 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins NT98_2142 SM00387 Histidine kinase-like ATPases NT98_2142 SM00388 His Kinase A (phosphoacceptor) domain NT98_2145 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_2146 SM00646 NT98_2146 NT98_2152 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_216 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. NT98_2163 SM00829 Enoylreductase NT98_2164 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_217 SM00382 ATPases associated with a variety of cellular activities NT98_2177 SM00422 helix_turn_helix, mercury resistance NT98_2177 SM00871 Bacterial transcription activator, effector binding domain NT98_2182 SM00642 Alpha-amylase domain NT98_2184 SM00533 DNA-binding domain of DNA mismatch repair MUTS family NT98_2184 SM00534 ATPase domain of DNA mismatch repair MUTS family NT98_2186 SM00855 Phosphoglycerate mutase family NT98_2187 SM00829 Enoylreductase NT98_220 SM00984 UDP binding domain NT98_2208 SM00829 Enoylreductase NT98_2212 SM00849 Metallo-beta-lactamase superfamily NT98_2226 SM00849 Metallo-beta-lactamase superfamily NT98_2231 SM00382 ATPases associated with a variety of cellular activities NT98_2234 SM00420 helix_turn_helix, Deoxyribose operon repressor NT98_2235 SM00871 Bacterial transcription activator, effector binding domain NT98_2241 SM00636 NT98_2241 NT98_2242 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_2243 SM00248 ankyrin repeats NT98_2257 SM00849 Metallo-beta-lactamase superfamily NT98_2261 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_2261 SM00866 NT98_2261 NT98_2265 SM00914 NT98_2265 NT98_2271 SM00829 Enoylreductase NT98_2274 SM00861 Transketolase, pyrimidine binding domain NT98_2275 SM01350 NT98_2275 NT98_228 SM00487 DEAD-like helicases superfamily NT98_228 SM00490 helicase superfamily c-terminal domain NT98_2289 SM00422 helix_turn_helix, mercury resistance NT98_2290 SM01091 Transporter associated domain NT98_23 SM00354 helix_turn _helix lactose operon repressor NT98_230 SM00357 Cold shock protein domain NT98_2308 SM00382 ATPases associated with a variety of cellular activities NT98_2310 SM01266 NT98_2310 NT98_232 SM00957 SecA DEAD-like domain NT98_232 SM00958 SecA preprotein cross-linking domain NT98_2321 SM00530 Helix-turn-helix XRE-family like proteins NT98_2324 SM00382 ATPases associated with a variety of cellular activities NT98_233 SM00937 NT98_233 NT98_2340 SM00530 Helix-turn-helix XRE-family like proteins NT98_2343 SM00422 helix_turn_helix, mercury resistance NT98_235 SM00382 ATPases associated with a variety of cellular activities NT98_2355 SM00382 ATPases associated with a variety of cellular activities NT98_2368 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_237 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NT98_237 SM00245 tail specific protease NT98_2370 SM00382 ATPases associated with a variety of cellular activities NT98_2375 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_2380 SM00854 Bacterial capsule synthesis protein PGA_cap NT98_2388 SM00287 Bacterial SH3 domain homologues NT98_2388 SM00644 NT98_2388 NT98_239 SM00382 ATPases associated with a variety of cellular activities NT98_2391 SM00421 helix_turn_helix, Lux Regulon NT98_2391 SM00448 cheY-homologous receiver domain NT98_2406 SM00448 cheY-homologous receiver domain NT98_2406 SM00862 Transcriptional regulatory protein, C terminal NT98_2407 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_2407 SM00387 Histidine kinase-like ATPases NT98_2407 SM00388 His Kinase A (phosphoacceptor) domain NT98_2409 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_2411 SM00382 ATPases associated with a variety of cellular activities NT98_2418 SM00530 Helix-turn-helix XRE-family like proteins NT98_242 SM00422 helix_turn_helix, mercury resistance NT98_2429 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_2429 SM00387 Histidine kinase-like ATPases NT98_2429 SM00388 His Kinase A (phosphoacceptor) domain NT98_2431 SM00448 cheY-homologous receiver domain NT98_2431 SM00862 Transcriptional regulatory protein, C terminal NT98_2449 SM00344 helix_turn_helix ASNC type NT98_245 SM00530 Helix-turn-helix XRE-family like proteins NT98_2461 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_2464 SM00226 Low molecular weight phosphatase family NT98_2470 SM00421 helix_turn_helix, Lux Regulon NT98_2470 SM00448 cheY-homologous receiver domain NT98_2471 SM00387 Histidine kinase-like ATPases NT98_2473 SM00382 ATPases associated with a variety of cellular activities NT98_25 SM00382 ATPases associated with a variety of cellular activities NT98_250 SM00422 helix_turn_helix, mercury resistance NT98_2517 SM00387 Histidine kinase-like ATPases NT98_2518 SM00448 cheY-homologous receiver domain NT98_2525 SM00342 helix_turn_helix, arabinose operon control protein NT98_253 SM00487 DEAD-like helicases superfamily NT98_253 SM00490 helicase superfamily c-terminal domain NT98_2530 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NT98_2530 SM00091 PAS domain NT98_2530 SM00387 Histidine kinase-like ATPases NT98_2530 SM00388 His Kinase A (phosphoacceptor) domain NT98_2534 SM00530 Helix-turn-helix XRE-family like proteins NT98_2535 SM00870 NT98_2535 NT98_2542 SM00849 Metallo-beta-lactamase superfamily NT98_2557 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_2561 SM00346 helix_turn_helix isocitrate lyase regulation NT98_2562 SM00796 Allophanate hydrolase subunit 1 NT98_2563 SM00797 Allophanate hydrolase subunit 2 NT98_2577 SM00422 helix_turn_helix, mercury resistance NT98_2590 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_2595 SM00342 helix_turn_helix, arabinose operon control protein NT98_2595 SM00871 Bacterial transcription activator, effector binding domain NT98_2600 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_2601 SM00382 ATPases associated with a variety of cellular activities NT98_2606 SM00889 Elongation factor G, domain IV NT98_2607 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_261 SM00028 Tetratricopeptide repeats NT98_2610 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_2622 SM01060 NT98_2622 NT98_2636 SM00850 LytTr DNA-binding domain NT98_2641 SM00530 Helix-turn-helix XRE-family like proteins NT98_2643 SM00098 Alkaline phosphatase homologues NT98_2648 SM00346 helix_turn_helix isocitrate lyase regulation NT98_2651 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NT98_2655 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_2662 SM01133 NT98_2662 NT98_2666 SM00382 ATPases associated with a variety of cellular activities NT98_2672 SM00287 Bacterial SH3 domain homologues NT98_2680 SM00830 Chorismate mutase type II NT98_2694 SM00530 Helix-turn-helix XRE-family like proteins NT98_2696 SM00382 ATPases associated with a variety of cellular activities NT98_27 SM00986 Uracil DNA glycosylase superfamily NT98_27 SM00987 UreE urease accessory protein, C-terminal domain NT98_2717 SM00028 Tetratricopeptide repeats NT98_2721 SM00382 ATPases associated with a variety of cellular activities NT98_2722 SM00062 Bacterial periplasmic substrate-binding proteins NT98_2736 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_2737 SM00382 ATPases associated with a variety of cellular activities NT98_2775 SM00344 helix_turn_helix ASNC type NT98_2787 SM00448 cheY-homologous receiver domain NT98_2787 SM00862 Transcriptional regulatory protein, C terminal NT98_2788 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_2788 SM00387 Histidine kinase-like ATPases NT98_2788 SM00388 His Kinase A (phosphoacceptor) domain NT98_2789 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain NT98_2795 SM00248 ankyrin repeats NT98_2799 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NT98_2802 SM00530 Helix-turn-helix XRE-family like proteins NT98_281 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NT98_2814 SM00091 PAS domain NT98_2814 SM00382 ATPases associated with a variety of cellular activities NT98_2819 SM01130 NT98_2819 NT98_2826 SM01131 NT98_2826 NT98_2835 SM00341 Helicase and RNase D C-terminal NT98_2835 SM00487 DEAD-like helicases superfamily NT98_2835 SM00490 helicase superfamily c-terminal domain NT98_2835 SM00956 NT98_2835 NT98_2841 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_2848 SM00849 Metallo-beta-lactamase superfamily NT98_285 SM01192 NT98_285 NT98_285 SM01193 NT98_285 NT98_2856 SM00060 Fibronectin type 3 domain NT98_2856 SM00495 Chitin-binding domain type 3 NT98_2863 SM00116 Domain in cystathionine beta-synthase and other proteins. NT98_2863 SM00382 ATPases associated with a variety of cellular activities NT98_2875 SM00861 Transketolase, pyrimidine binding domain NT98_2880 SM00420 helix_turn_helix, Deoxyribose operon repressor NT98_2880 SM01134 NT98_2880 NT98_2908 SM00829 Enoylreductase NT98_291 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_291 SM00357 Cold shock protein domain NT98_291 SM00955 NT98_291 NT98_2910 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_2915 SM00871 Bacterial transcription activator, effector binding domain NT98_2920 SM00014 Acid phosphatase homologues NT98_2938 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_294 SM00448 cheY-homologous receiver domain NT98_294 SM00862 Transcriptional regulatory protein, C terminal NT98_2953 SM00480 DNA polymerase III beta subunit NT98_2973 SM00465 GIY-YIG type nucleases (URI domain) NT98_298 SM00382 ATPases associated with a variety of cellular activities NT98_3013 SM00740 NT98_3013 NT98_3014 SM00014 Acid phosphatase homologues NT98_3015 SM00829 Enoylreductase NT98_3016 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_3016 SM00387 Histidine kinase-like ATPases NT98_3016 SM00388 His Kinase A (phosphoacceptor) domain NT98_3017 SM00448 cheY-homologous receiver domain NT98_3017 SM00862 Transcriptional regulatory protein, C terminal NT98_3022 SM00387 Histidine kinase-like ATPases NT98_3022 SM00388 His Kinase A (phosphoacceptor) domain NT98_3025 SM00382 ATPases associated with a variety of cellular activities NT98_3029 SM00091 PAS domain NT98_3029 SM00387 Histidine kinase-like ATPases NT98_3029 SM00388 His Kinase A (phosphoacceptor) domain NT98_304 SM00382 ATPases associated with a variety of cellular activities NT98_3052 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_3059 SM00382 ATPases associated with a variety of cellular activities NT98_3062 SM00382 ATPases associated with a variety of cellular activities NT98_3064 SM00387 Histidine kinase-like ATPases NT98_3066 SM00448 cheY-homologous receiver domain NT98_3066 SM00862 Transcriptional regulatory protein, C terminal NT98_3083 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_3086 SM00342 helix_turn_helix, arabinose operon control protein NT98_3104 SM00448 cheY-homologous receiver domain NT98_3104 SM00862 Transcriptional regulatory protein, C terminal NT98_3105 SM00387 Histidine kinase-like ATPases NT98_3105 SM00388 His Kinase A (phosphoacceptor) domain NT98_311 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_3119 SM00878 Biotin carboxylase C-terminal domain NT98_312 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain NT98_3125 SM00382 ATPases associated with a variety of cellular activities NT98_314 SM00363 S4 RNA-binding domain NT98_3155 SM00855 Phosphoglycerate mutase family NT98_3156 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_3162 SM00382 ATPases associated with a variety of cellular activities NT98_3171 SM00487 DEAD-like helicases superfamily NT98_3171 SM00490 helicase superfamily c-terminal domain NT98_3175 SM00849 Metallo-beta-lactamase superfamily NT98_3180 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_3183 SM01207 NT98_3183 NT98_3196 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_3197 SM00835 Cupin NT98_3201 SM00530 Helix-turn-helix XRE-family like proteins NT98_3203 SM00646 NT98_3203 NT98_3205 SM00382 ATPases associated with a variety of cellular activities NT98_3206 SM00382 ATPases associated with a variety of cellular activities NT98_3214 SM00859 Semialdehyde dehydrogenase, NAD binding domain NT98_322 SM01276 NT98_322 NT98_3221 SM00357 Cold shock protein domain NT98_3229 SM00530 Helix-turn-helix XRE-family like proteins NT98_3233 SM01059 Chloramphenicol acetyltransferase NT98_3238 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_3244 SM00849 Metallo-beta-lactamase superfamily NT98_3254 SM00382 ATPases associated with a variety of cellular activities NT98_3256 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NT98_3257 SM00363 S4 RNA-binding domain NT98_3265 SM00411 bacterial (prokaryotic) histone like domain NT98_3269 SM00923 MbtH-like protein NT98_3270 SM00823 Phosphopantetheine attachment site NT98_3270 SM00824 Thioesterase NT98_3277 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_3322 SM00014 Acid phosphatase homologues NT98_3325 SM00219 Tyrosine kinase, catalytic domain NT98_3333 SM00382 ATPases associated with a variety of cellular activities NT98_3336 SM00882 Coenzyme A transferase NT98_3337 SM00882 Coenzyme A transferase NT98_3340 SM00387 Histidine kinase-like ATPases NT98_3340 SM00388 His Kinase A (phosphoacceptor) domain NT98_3343 SM01091 Transporter associated domain NT98_3351 SM00382 ATPases associated with a variety of cellular activities NT98_3358 SM01350 NT98_3358 NT98_3366 SM00829 Enoylreductase NT98_3368 SM00421 helix_turn_helix, Lux Regulon NT98_3368 SM00448 cheY-homologous receiver domain NT98_3369 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NT98_3376 SM00014 Acid phosphatase homologues NT98_3388 SM00563 Phosphate acyltransferases NT98_3399 SM00382 ATPases associated with a variety of cellular activities NT98_340 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_3420 SM00028 Tetratricopeptide repeats NT98_3422 SM00836 DALR anticodon binding domain NT98_3422 SM01016 Arginyl tRNA synthetase N terminal dom NT98_3427 SM00567 E-Z type HEAT repeats NT98_3427 SM00932 Scaffold protein Nfu/NifU N terminal NT98_3431 SM00382 ATPases associated with a variety of cellular activities NT98_3432 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_344 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_344 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_3452 SM00852 Probable molybdopterin binding domain NT98_3454 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_3455 SM00100 Cyclic nucleotide-monophosphate binding domain NT98_3455 SM00419 helix_turn_helix, cAMP Regulatory protein NT98_3457 SM00382 ATPases associated with a variety of cellular activities NT98_3458 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_3463 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NT98_3466 SM00460 Transglutaminase/protease-like homologues NT98_3469 SM00849 Metallo-beta-lactamase superfamily NT98_3475 SM00829 Enoylreductase NT98_3478 SM00487 DEAD-like helicases superfamily NT98_3478 SM00490 helicase superfamily c-terminal domain NT98_349 SM00387 Histidine kinase-like ATPases NT98_349 SM00388 His Kinase A (phosphoacceptor) domain NT98_3499 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_350 SM00448 cheY-homologous receiver domain NT98_350 SM00862 Transcriptional regulatory protein, C terminal NT98_3506 SM01005 Alanine racemase, C-terminal domain NT98_3509 SM00855 Phosphoglycerate mutase family NT98_3513 SM00244 prohibitin homologues NT98_3527 SM01091 Transporter associated domain NT98_3532 SM00155 Phospholipase D. Active site motifs. NT98_3542 SM00855 Phosphoglycerate mutase family NT98_355 SM00530 Helix-turn-helix XRE-family like proteins NT98_3553 SM00833 Cobalamin synthesis protein cobW C-terminal domain NT98_3565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_3565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_3572 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_3575 SM00966 SpoVT / AbrB like domain NT98_3580 SM00460 Transglutaminase/protease-like homologues NT98_3585 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_3599 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_3599 SM00387 Histidine kinase-like ATPases NT98_3599 SM00388 His Kinase A (phosphoacceptor) domain NT98_36 SM00936 Penicillin-binding protein 5, C-terminal domain NT98_3600 SM00448 cheY-homologous receiver domain NT98_3600 SM00862 Transcriptional regulatory protein, C terminal NT98_3615 SM00382 ATPases associated with a variety of cellular activities NT98_3619 SM00448 cheY-homologous receiver domain NT98_3619 SM00862 Transcriptional regulatory protein, C terminal NT98_3620 SM00387 Histidine kinase-like ATPases NT98_3620 SM00388 His Kinase A (phosphoacceptor) domain NT98_3621 SM00387 Histidine kinase-like ATPases NT98_3621 SM00388 His Kinase A (phosphoacceptor) domain NT98_3622 SM00448 cheY-homologous receiver domain NT98_3622 SM00862 Transcriptional regulatory protein, C terminal NT98_3623 SM00382 ATPases associated with a variety of cellular activities NT98_3625 SM00287 Bacterial SH3 domain homologues NT98_3636 SM00382 ATPases associated with a variety of cellular activities NT98_3637 SM00382 ATPases associated with a variety of cellular activities NT98_3642 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_3648 SM00382 ATPases associated with a variety of cellular activities NT98_3649 SM00382 ATPases associated with a variety of cellular activities NT98_3656 SM00833 Cobalamin synthesis protein cobW C-terminal domain NT98_3685 SM00344 helix_turn_helix ASNC type NT98_3688 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NT98_3688 SM00493 NT98_3688 NT98_3691 SM01011 Aminopeptidase P, N-terminal domain NT98_3699 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain NT98_3701 SM01133 NT98_3701 NT98_3714 SM00450 Rhodanese Homology Domain NT98_3717 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_3717 SM00387 Histidine kinase-like ATPases NT98_3717 SM00388 His Kinase A (phosphoacceptor) domain NT98_3718 SM00448 cheY-homologous receiver domain NT98_3718 SM00862 Transcriptional regulatory protein, C terminal NT98_372 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_372 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_3725 SM00850 LytTr DNA-binding domain NT98_3732 SM00854 Bacterial capsule synthesis protein PGA_cap NT98_3763 SM00047 Lysozyme subfamily 2 NT98_3764 SM00646 NT98_3764 NT98_3771 SM00530 Helix-turn-helix XRE-family like proteins NT98_3774 SM00487 DEAD-like helicases superfamily NT98_3774 SM00490 helicase superfamily c-terminal domain NT98_3775 SM00448 cheY-homologous receiver domain NT98_3776 SM00387 Histidine kinase-like ATPases NT98_3777 SM00919 Malic enzyme, NAD binding domain NT98_3777 SM01274 NT98_3777 NT98_3781 SM00155 Phospholipase D. Active site motifs. NT98_3786 SM00382 ATPases associated with a variety of cellular activities NT98_3788 SM00421 helix_turn_helix, Lux Regulon NT98_3788 SM00448 cheY-homologous receiver domain NT98_3795 SM00530 Helix-turn-helix XRE-family like proteins NT98_381 SM00849 Metallo-beta-lactamase superfamily NT98_3812 SM00422 helix_turn_helix, mercury resistance NT98_3817 SM00833 Cobalamin synthesis protein cobW C-terminal domain NT98_3819 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_3819 SM00895 NT98_3819 NT98_3827 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_3832 SM00855 Phosphoglycerate mutase family NT98_3835 SM00835 Cupin NT98_3839 SM00849 Metallo-beta-lactamase superfamily NT98_3839 SM01027 Beta-Casp domain NT98_3842 SM00382 ATPases associated with a variety of cellular activities NT98_3847 SM00530 Helix-turn-helix XRE-family like proteins NT98_3853 SM01321 NT98_3853 NT98_3863 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NT98_3865 SM00382 ATPases associated with a variety of cellular activities NT98_3865 SM00962 SRP54-type protein, GTPase domain NT98_3882 SM00260 Two component signalling adaptor domain NT98_3882 SM00448 cheY-homologous receiver domain NT98_3889 SM00382 ATPases associated with a variety of cellular activities NT98_3904 SM00138 Methyltransferase, chemotaxis proteins NT98_3908 SM00073 Histidine Phosphotransfer domain NT98_3908 SM00260 Two component signalling adaptor domain NT98_3908 SM00387 Histidine kinase-like ATPases NT98_3908 SM01231 NT98_3908 NT98_3909 SM00448 cheY-homologous receiver domain NT98_3927 SM00422 helix_turn_helix, mercury resistance NT98_3927 SM00871 Bacterial transcription activator, effector binding domain NT98_3928 SM00849 Metallo-beta-lactamase superfamily NT98_393 SM00493 NT98_393 NT98_3938 SM00357 Cold shock protein domain NT98_396 SM00382 ATPases associated with a variety of cellular activities NT98_396 SM00930 NT98_396 NT98_3960 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NT98_3960 SM00475 5'-3' exonuclease NT98_3966 SM00450 Rhodanese Homology Domain NT98_3978 SM00491 NT98_3978 NT98_3980 SM00981 NT98_3980 NT98_3991 SM00060 Fibronectin type 3 domain NT98_3993 SM00478 endonuclease III NT98_3993 SM00525 NT98_3993 NT98_3998 SM00479 NT98_3998 NT98_3998 SM00491 NT98_3998 NT98_400 SM00382 ATPases associated with a variety of cellular activities NT98_4007 SM00851 MGS-like domain NT98_4011 SM00986 Uracil DNA glycosylase superfamily NT98_4011 SM00987 UreE urease accessory protein, C-terminal domain NT98_4020 SM00914 NT98_4020 NT98_4021 SM00028 Tetratricopeptide repeats NT98_4025 SM00562 NT98_4025 NT98_4030 SM00411 bacterial (prokaryotic) histone like domain NT98_4042 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_4045 SM00870 NT98_4045 NT98_4047 SM00644 NT98_4047 NT98_4050 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NT98_4052 SM00422 helix_turn_helix, mercury resistance NT98_4054 SM00257 Lysin motif NT98_4056 SM00487 DEAD-like helicases superfamily NT98_4056 SM00490 helicase superfamily c-terminal domain NT98_4061 SM00257 Lysin motif NT98_4063 SM00091 PAS domain NT98_4063 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4063 SM00387 Histidine kinase-like ATPases NT98_4063 SM00388 His Kinase A (phosphoacceptor) domain NT98_4064 SM00448 cheY-homologous receiver domain NT98_4064 SM00862 Transcriptional regulatory protein, C terminal NT98_4068 SM00363 S4 RNA-binding domain NT98_4079 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4079 SM00387 Histidine kinase-like ATPases NT98_4079 SM00388 His Kinase A (phosphoacceptor) domain NT98_4083 SM00387 Histidine kinase-like ATPases NT98_4083 SM00388 His Kinase A (phosphoacceptor) domain NT98_4101 SM00421 helix_turn_helix, Lux Regulon NT98_4101 SM00448 cheY-homologous receiver domain NT98_4102 SM00387 Histidine kinase-like ATPases NT98_412 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_4139 SM01329 NT98_4139 NT98_414 SM00855 Phosphoglycerate mutase family NT98_4140 SM00917 LeuA allosteric (dimerisation) domain NT98_4153 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_417 SM00422 helix_turn_helix, mercury resistance NT98_4177 SM00344 helix_turn_helix ASNC type NT98_4181 SM00382 ATPases associated with a variety of cellular activities NT98_4183 SM00382 ATPases associated with a variety of cellular activities NT98_4184 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_4199 SM00387 Histidine kinase-like ATPases NT98_4199 SM00388 His Kinase A (phosphoacceptor) domain NT98_4203 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_4204 SM00387 Histidine kinase-like ATPases NT98_4204 SM00388 His Kinase A (phosphoacceptor) domain NT98_4208 SM01007 Class II Aldolase and Adducin N-terminal domain NT98_4209 SM00365 Leucine-rich repeat, SDS22-like subfamily NT98_4209 SM00369 Leucine-rich repeats, typical (most populated) subfamily NT98_4209 SM00725 NEAr Transporter domain NT98_4211 SM00420 helix_turn_helix, Deoxyribose operon repressor NT98_4211 SM01134 NT98_4211 NT98_4216 SM00382 ATPases associated with a variety of cellular activities NT98_4223 SM00822 NT98_4223 NT98_4237 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_4237 SM00895 NT98_4237 NT98_4238 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4238 SM00387 Histidine kinase-like ATPases NT98_4238 SM00388 His Kinase A (phosphoacceptor) domain NT98_4239 SM00448 cheY-homologous receiver domain NT98_4239 SM00862 Transcriptional regulatory protein, C terminal NT98_4249 SM00014 Acid phosphatase homologues NT98_4254 SM00382 ATPases associated with a variety of cellular activities NT98_4259 SM00530 Helix-turn-helix XRE-family like proteins NT98_4274 SM00857 Resolvase, N terminal domain NT98_4288 SM00530 Helix-turn-helix XRE-family like proteins NT98_4289 SM00861 Transketolase, pyrimidine binding domain NT98_4299 SM01324 NT98_4299 NT98_4314 SM00100 Cyclic nucleotide-monophosphate binding domain NT98_4344 SM00954 Region found in RelA / SpoT proteins NT98_4346 SM01118 NT98_4346 NT98_4352 SM00155 Phospholipase D. Active site motifs. NT98_4359 SM00382 ATPases associated with a variety of cellular activities NT98_4360 SM00382 ATPases associated with a variety of cellular activities NT98_4368 SM00825 Beta-ketoacyl synthase NT98_4375 SM00382 ATPases associated with a variety of cellular activities NT98_4375 SM01086 C-terminal, D2-small domain, of ClpB protein NT98_4389 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_4391 SM00530 Helix-turn-helix XRE-family like proteins NT98_4393 SM00642 Alpha-amylase domain NT98_4395 SM01060 NT98_4395 NT98_44 SM00382 ATPases associated with a variety of cellular activities NT98_4419 SM00357 Cold shock protein domain NT98_443 SM00382 ATPases associated with a variety of cellular activities NT98_4432 SM00448 cheY-homologous receiver domain NT98_4432 SM00862 Transcriptional regulatory protein, C terminal NT98_4433 SM00387 Histidine kinase-like ATPases NT98_4433 SM00388 His Kinase A (phosphoacceptor) domain NT98_4436 SM00342 helix_turn_helix, arabinose operon control protein NT98_4436 SM00871 Bacterial transcription activator, effector binding domain NT98_4439 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_4448 SM00849 Metallo-beta-lactamase superfamily NT98_4450 SM00354 helix_turn _helix lactose operon repressor NT98_4476 SM00382 ATPases associated with a variety of cellular activities NT98_4479 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_4501 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_4509 SM00829 Enoylreductase NT98_4518 SM00387 Histidine kinase-like ATPases NT98_4518 SM00388 His Kinase A (phosphoacceptor) domain NT98_4518 SM00448 cheY-homologous receiver domain NT98_4519 SM00138 Methyltransferase, chemotaxis proteins NT98_4520 SM00331 Sigma factor PP2C-like phosphatases NT98_4520 SM00448 cheY-homologous receiver domain NT98_4538 SM00460 Transglutaminase/protease-like homologues NT98_454 SM00871 Bacterial transcription activator, effector binding domain NT98_4540 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_4543 SM00028 Tetratricopeptide repeats NT98_4545 SM01120 NT98_4545 NT98_4552 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_4567 SM00382 ATPases associated with a variety of cellular activities NT98_4587 SM00382 ATPases associated with a variety of cellular activities NT98_4593 SM00448 cheY-homologous receiver domain NT98_4594 SM00091 PAS domain NT98_4594 SM00387 Histidine kinase-like ATPases NT98_46 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NT98_4601 SM00530 Helix-turn-helix XRE-family like proteins NT98_4605 SM00287 Bacterial SH3 domain homologues NT98_4605 SM00644 NT98_4605 NT98_4626 SM00646 NT98_4626 NT98_4639 SM00957 SecA DEAD-like domain NT98_4639 SM00958 SecA preprotein cross-linking domain NT98_4646 SM00422 helix_turn_helix, mercury resistance NT98_4651 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_4652 SM00644 NT98_4652 NT98_4669 SM00382 ATPases associated with a variety of cellular activities NT98_4671 SM00062 Bacterial periplasmic substrate-binding proteins NT98_4671 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NT98_4672 SM00382 ATPases associated with a variety of cellular activities NT98_4673 SM00382 ATPases associated with a variety of cellular activities NT98_4685 SM00849 Metallo-beta-lactamase superfamily NT98_4687 SM00382 ATPases associated with a variety of cellular activities NT98_4689 SM00382 ATPases associated with a variety of cellular activities NT98_4691 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4691 SM00387 Histidine kinase-like ATPases NT98_4691 SM00388 His Kinase A (phosphoacceptor) domain NT98_4692 SM00448 cheY-homologous receiver domain NT98_4692 SM00862 Transcriptional regulatory protein, C terminal NT98_4698 SM00422 helix_turn_helix, mercury resistance NT98_4701 SM00344 helix_turn_helix ASNC type NT98_472 SM00479 NT98_472 NT98_4721 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen NT98_473 SM01298 NT98_473 NT98_4733 SM00382 ATPases associated with a variety of cellular activities NT98_4735 SM00287 Bacterial SH3 domain homologues NT98_4745 SM00829 Enoylreductase NT98_4750 SM00450 Rhodanese Homology Domain NT98_4751 SM00450 Rhodanese Homology Domain NT98_4755 SM00450 Rhodanese Homology Domain NT98_4755 SM00849 Metallo-beta-lactamase superfamily NT98_4756 SM00450 Rhodanese Homology Domain NT98_4758 SM00450 Rhodanese Homology Domain NT98_4780 SM00382 ATPases associated with a variety of cellular activities NT98_4785 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_480 SM00344 helix_turn_helix ASNC type NT98_4803 SM00382 ATPases associated with a variety of cellular activities NT98_4805 SM00287 Bacterial SH3 domain homologues NT98_4808 SM00116 Domain in cystathionine beta-synthase and other proteins. NT98_482 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_4840 SM00899 NT98_4840 NT98_4858 SM00530 Helix-turn-helix XRE-family like proteins NT98_4867 SM00530 Helix-turn-helix XRE-family like proteins NT98_4869 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_4876 SM00770 Zinc dependent phospholipase C (alpha toxin) NT98_4878 SM00829 Enoylreductase NT98_4884 SM00382 ATPases associated with a variety of cellular activities NT98_4887 SM00354 helix_turn _helix lactose operon repressor NT98_4889 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_4891 SM00382 ATPases associated with a variety of cellular activities NT98_4892 SM00382 ATPases associated with a variety of cellular activities NT98_4900 SM00448 cheY-homologous receiver domain NT98_4900 SM00862 Transcriptional regulatory protein, C terminal NT98_4901 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4901 SM00387 Histidine kinase-like ATPases NT98_4901 SM00388 His Kinase A (phosphoacceptor) domain NT98_4911 SM00062 Bacterial periplasmic substrate-binding proteins NT98_4911 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NT98_4912 SM00382 ATPases associated with a variety of cellular activities NT98_4917 SM00421 helix_turn_helix, Lux Regulon NT98_4917 SM00448 cheY-homologous receiver domain NT98_4918 SM00387 Histidine kinase-like ATPases NT98_4923 SM00642 Alpha-amylase domain NT98_4925 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_4925 SM00866 NT98_4925 NT98_4927 SM00052 Putative diguanylate phosphodiesterase NT98_4927 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NT98_4927 SM00267 diguanylate cyclase NT98_4930 SM00155 Phospholipase D. Active site motifs. NT98_4931 SM00382 ATPases associated with a variety of cellular activities NT98_4932 SM00327 von Willebrand factor (vWF) type A domain NT98_4938 SM00382 ATPases associated with a variety of cellular activities NT98_4944 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_4947 SM01091 Transporter associated domain NT98_4957 SM00028 Tetratricopeptide repeats NT98_4958 SM00530 Helix-turn-helix XRE-family like proteins NT98_4961 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_4963 SM01002 Alanine dehydrogenase/PNT, C-terminal domain NT98_4963 SM01003 Alanine dehydrogenase/PNT, N-terminal domain NT98_4966 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NT98_4966 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NT98_4970 SM00448 cheY-homologous receiver domain NT98_4970 SM00862 Transcriptional regulatory protein, C terminal NT98_4971 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4971 SM00387 Histidine kinase-like ATPases NT98_4971 SM00388 His Kinase A (phosphoacceptor) domain NT98_4973 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_4976 SM00919 Malic enzyme, NAD binding domain NT98_4976 SM01274 NT98_4976 NT98_4978 SM00448 cheY-homologous receiver domain NT98_4979 SM00387 Histidine kinase-like ATPases NT98_4980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_4980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4983 SM00387 Histidine kinase-like ATPases NT98_4983 SM00388 His Kinase A (phosphoacceptor) domain NT98_4984 SM00448 cheY-homologous receiver domain NT98_4984 SM00862 Transcriptional regulatory protein, C terminal NT98_4986 SM00248 ankyrin repeats NT98_4990 SM00448 cheY-homologous receiver domain NT98_4991 SM00091 PAS domain NT98_4991 SM00387 Histidine kinase-like ATPases NT98_4992 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_4992 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_4993 SM00244 prohibitin homologues NT98_4995 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins NT98_4998 SM00365 Leucine-rich repeat, SDS22-like subfamily NT98_4998 SM00369 Leucine-rich repeats, typical (most populated) subfamily NT98_4998 SM00725 NEAr Transporter domain NT98_4999 SM00448 cheY-homologous receiver domain NT98_4999 SM00850 LytTr DNA-binding domain NT98_5002 SM00793 Accessory gene regulator B NT98_5010 SM00382 ATPases associated with a variety of cellular activities NT98_5019 SM00763 PrkA AAA domain NT98_5021 SM00052 Putative diguanylate phosphodiesterase NT98_5021 SM00091 PAS domain NT98_5021 SM00267 diguanylate cyclase NT98_5024 SM00567 E-Z type HEAT repeats NT98_5057 SM00382 ATPases associated with a variety of cellular activities NT98_5061 SM00382 ATPases associated with a variety of cellular activities NT98_5066 SM00478 endonuclease III NT98_5066 SM00525 NT98_5066 NT98_5082 SM00984 UDP binding domain NT98_5093 SM00530 Helix-turn-helix XRE-family like proteins NT98_5097 SM00382 ATPases associated with a variety of cellular activities NT98_5101 SM00478 endonuclease III NT98_5119 SM00226 Low molecular weight phosphatase family NT98_5121 SM00831 Cation transporter/ATPase, N-terminus NT98_5130 SM00946 Prolyl-tRNA synthetase, C-terminal NT98_5135 SM00530 Helix-turn-helix XRE-family like proteins NT98_5143 SM00060 Fibronectin type 3 domain NT98_5143 SM00636 NT98_5143 NT98_5143 SM00637 NT98_5143 NT98_5144 SM00382 ATPases associated with a variety of cellular activities NT98_5146 SM00382 ATPases associated with a variety of cellular activities NT98_5150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_5150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_5154 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NT98_5154 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NT98_5154 SM00493 NT98_5154 NT98_5158 SM00642 Alpha-amylase domain NT98_5160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NT98_5160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_5161 SM00382 ATPases associated with a variety of cellular activities NT98_5162 SM00062 Bacterial periplasmic substrate-binding proteins NT98_5162 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NT98_5183 SM01007 Class II Aldolase and Adducin N-terminal domain NT98_5192 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NT98_5196 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NT98_5196 SM00387 Histidine kinase-like ATPases NT98_5196 SM00388 His Kinase A (phosphoacceptor) domain NT98_52 SM00422 helix_turn_helix, mercury resistance NT98_520 SM00642 Alpha-amylase domain NT98_5205 SM00382 ATPases associated with a variety of cellular activities NT98_5209 SM00046 Diacylglycerol kinase catalytic domain (presumed) NT98_5210 SM00845 GatB domain NT98_5214 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_5220 SM00382 ATPases associated with a variety of cellular activities NT98_5220 SM00930 NT98_5220 NT98_5226 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NT98_5226 SM00292 breast cancer carboxy-terminal domain NT98_5226 SM00532 Ligase N family NT98_5230 SM00244 prohibitin homologues NT98_5232 SM01209 NT98_5232 NT98_5232 SM01210 NT98_5232 NT98_5233 SM00798 AICARFT/IMPCHase bienzyme NT98_5233 SM00851 MGS-like domain NT98_5238 SM01211 NT98_5238 NT98_5241 SM00998 Adenylosuccinate lyase C-terminus NT98_5243 SM01001 AIR carboxylase NT98_5248 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_527 SM00422 helix_turn_helix, mercury resistance NT98_5271 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_5271 SM00387 Histidine kinase-like ATPases NT98_5271 SM00388 His Kinase A (phosphoacceptor) domain NT98_5272 SM00448 cheY-homologous receiver domain NT98_5272 SM00862 Transcriptional regulatory protein, C terminal NT98_5276 SM00883 Chaperonin 10 Kd subunit NT98_5279 SM00881 CoA binding domain NT98_5280 SM00382 ATPases associated with a variety of cellular activities NT98_529 SM00357 Cold shock protein domain NT98_5302 SM00731 SprT homologues. NT98_5303 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_5303 SM00732 Likely ribonuclease with RNase H fold. NT98_5306 SM01005 Alanine racemase, C-terminal domain NT98_5311 SM00487 DEAD-like helicases superfamily NT98_5311 SM00490 helicase superfamily c-terminal domain NT98_5325 SM00382 ATPases associated with a variety of cellular activities NT98_5326 SM00382 ATPases associated with a variety of cellular activities NT98_5334 SM00382 ATPases associated with a variety of cellular activities NT98_5335 SM00421 helix_turn_helix, Lux Regulon NT98_5335 SM00448 cheY-homologous receiver domain NT98_5336 SM00387 Histidine kinase-like ATPases NT98_5337 SM00382 ATPases associated with a variety of cellular activities NT98_5348 SM00354 helix_turn _helix lactose operon repressor NT98_5350 SM00563 Phosphate acyltransferases NT98_5366 SM00382 ATPases associated with a variety of cellular activities NT98_5367 SM00382 ATPases associated with a variety of cellular activities NT98_537 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NT98_5379 SM00829 Enoylreductase NT98_538 SM00448 cheY-homologous receiver domain NT98_538 SM00862 Transcriptional regulatory protein, C terminal NT98_539 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_539 SM00387 Histidine kinase-like ATPases NT98_539 SM00388 His Kinase A (phosphoacceptor) domain NT98_5409 SM01251 NT98_5409 NT98_5412 SM00646 NT98_5412 NT98_5418 SM00382 ATPases associated with a variety of cellular activities NT98_5419 SM00382 ATPases associated with a variety of cellular activities NT98_5421 SM00662 RNA polymerases D NT98_5425 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_5437 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NT98_5438 SM01374 NT98_5438 NT98_5442 SM00322 K homology RNA-binding domain NT98_5445 SM01382 NT98_5445 NT98_5445 SM01383 NT98_5445 NT98_5449 SM01403 NT98_5449 NT98_5451 SM00838 Elongation factor G C-terminus NT98_5451 SM00889 Elongation factor G, domain IV NT98_5455 SM00663 RNA polymerase I subunit A N-terminus NT98_5461 SM00649 Ribosomal protein L11/L12 NT98_5462 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. NT98_5464 SM00421 helix_turn_helix, Lux Regulon NT98_5466 SM00967 RNA 2'-O ribose methyltransferase substrate binding NT98_5467 SM00535 Ribonuclease III family NT98_5468 SM00840 NT98_5468 NT98_547 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_547 SM00866 NT98_547 NT98_5473 SM00670 Large family of predicted nucleotide-binding domains NT98_5475 SM00382 ATPases associated with a variety of cellular activities NT98_5476 SM00382 ATPases associated with a variety of cellular activities NT98_5476 SM01086 C-terminal, D2-small domain, of ClpB protein NT98_5498 SM00530 Helix-turn-helix XRE-family like proteins NT98_5500 SM00905 Dihydroneopterin aldolase NT98_5508 SM00382 ATPases associated with a variety of cellular activities NT98_5510 SM00977 TilS substrate C-terminal domain NT98_5511 SM00331 Sigma factor PP2C-like phosphatases NT98_5511 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain NT98_5514 SM00316 Ribosomal protein S1-like RNA-binding domain NT98_5518 SM00363 S4 RNA-binding domain NT98_5521 SM00966 SpoVT / AbrB like domain NT98_5522 SM00487 DEAD-like helicases superfamily NT98_5522 SM00490 helicase superfamily c-terminal domain NT98_5522 SM00982 NT98_5522 NT98_5522 SM01058 CarD-like/TRCF domain NT98_5525 SM01400 NT98_5525 NT98_553 SM00382 ATPases associated with a variety of cellular activities NT98_5534 SM00650 Ribosomal RNA adenine dimethylases NT98_5535 SM00493 NT98_5535 NT98_5538 SM00966 SpoVT / AbrB like domain NT98_5556 SM00493 NT98_5556 NT98_5558 SM00382 ATPases associated with a variety of cellular activities NT98_556 SM00387 Histidine kinase-like ATPases NT98_5568 SM00936 Penicillin-binding protein 5, C-terminal domain NT98_5569 SM00116 Domain in cystathionine beta-synthase and other proteins. NT98_5569 SM01240 NT98_5569 NT98_557 SM00448 cheY-homologous receiver domain NT98_557 SM00862 Transcriptional regulatory protein, C terminal NT98_5579 SM00434 DNA Topoisomerase IV NT98_558 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_5580 SM00387 Histidine kinase-like ATPases NT98_5580 SM00433 TopoisomeraseII NT98_5583 SM00480 DNA polymerase III beta subunit NT98_5584 SM00382 ATPases associated with a variety of cellular activities NT98_5584 SM00760 Bacterial dnaA protein helix-turn-helix domain NT98_5588 SM00393 Putative single-stranded nucleic acids-binding domain NT98_5588 SM01245 NT98_5588 NT98_5590 SM01228 NT98_5590 NT98_5592 SM00470 ParB-like nuclease domain NT98_5594 SM00470 ParB-like nuclease domain NT98_560 SM00342 helix_turn_helix, arabinose operon control protein NT98_560 SM00871 Bacterial transcription activator, effector binding domain NT98_5603 SM00267 diguanylate cyclase NT98_5606 SM00788 Adenylosuccinate synthetase NT98_561 SM00382 ATPases associated with a variety of cellular activities NT98_5611 SM00448 cheY-homologous receiver domain NT98_5611 SM00862 Transcriptional regulatory protein, C terminal NT98_5612 SM00091 PAS domain NT98_5612 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_5612 SM00387 Histidine kinase-like ATPases NT98_5612 SM00388 His Kinase A (phosphoacceptor) domain NT98_5615 SM00849 Metallo-beta-lactamase superfamily NT98_5616 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NT98_5622 SM01240 NT98_5622 NT98_5624 SM00487 DEAD-like helicases superfamily NT98_5624 SM00490 helicase superfamily c-terminal domain NT98_5635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NT98_5635 SM00387 Histidine kinase-like ATPases NT98_5636 SM00448 cheY-homologous receiver domain NT98_5636 SM00850 LytTr DNA-binding domain NT98_564 SM00342 helix_turn_helix, arabinose operon control protein NT98_5647 SM00382 ATPases associated with a variety of cellular activities NT98_5652 SM00530 Helix-turn-helix XRE-family like proteins NT98_5664 SM00287 Bacterial SH3 domain homologues NT98_5682 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_5682 SM00895 NT98_5682 NT98_5685 SM01350 NT98_5685 NT98_5708 SM00849 Metallo-beta-lactamase superfamily NT98_571 SM00046 Diacylglycerol kinase catalytic domain (presumed) NT98_5769 SM00858 NT98_5769 NT98_577 SM00448 cheY-homologous receiver domain NT98_577 SM00862 Transcriptional regulatory protein, C terminal NT98_5773 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_578 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_578 SM00387 Histidine kinase-like ATPases NT98_578 SM00388 His Kinase A (phosphoacceptor) domain NT98_5790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_580 SM00899 NT98_580 NT98_5808 SM00857 Resolvase, N terminal domain NT98_5817 SM00758 NT98_5817 NT98_5821 SM00387 Histidine kinase-like ATPases NT98_5821 SM00388 His Kinase A (phosphoacceptor) domain NT98_5822 SM00448 cheY-homologous receiver domain NT98_5822 SM00862 Transcriptional regulatory protein, C terminal NT98_5826 SM00382 ATPases associated with a variety of cellular activities NT98_5832 SM00047 Lysozyme subfamily 2 NT98_5845 SM00857 Resolvase, N terminal domain NT98_5893 SM00382 ATPases associated with a variety of cellular activities NT98_5899 SM00497 Intron encoded nuclease repeat motif NT98_5909 SM01040 BRO family, N-terminal domain NT98_5910 SM00530 Helix-turn-helix XRE-family like proteins NT98_5911 SM00530 Helix-turn-helix XRE-family like proteins NT98_592 SM00894 Excalibur calcium-binding domain NT98_5921 SM00422 helix_turn_helix, mercury resistance NT98_5925 SM00646 NT98_5925 NT98_596 SM01234 NT98_596 NT98_597 SM00947 Carbonic anhydrase NT98_60 SM00836 DALR anticodon binding domain NT98_60 SM01016 Arginyl tRNA synthetase N terminal dom NT98_613 SM00382 ATPases associated with a variety of cellular activities NT98_619 SM00387 Histidine kinase-like ATPases NT98_619 SM00388 His Kinase A (phosphoacceptor) domain NT98_620 SM00387 Histidine kinase-like ATPases NT98_635 SM00852 Probable molybdopterin binding domain NT98_638 SM00014 Acid phosphatase homologues NT98_648 SM00382 ATPases associated with a variety of cellular activities NT98_650 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_654 SM00382 ATPases associated with a variety of cellular activities NT98_669 SM00450 Rhodanese Homology Domain NT98_673 SM00729 Elongator protein 3, MiaB family, Radical SAM NT98_676 SM00852 Probable molybdopterin binding domain NT98_68 SM00382 ATPases associated with a variety of cellular activities NT98_683 SM01058 CarD-like/TRCF domain NT98_688 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NT98_692 SM00363 S4 RNA-binding domain NT98_693 SM00420 helix_turn_helix, Deoxyribose operon repressor NT98_696 SM00642 Alpha-amylase domain NT98_700 SM00849 Metallo-beta-lactamase superfamily NT98_708 SM00646 NT98_708 NT98_709 SM00382 ATPases associated with a variety of cellular activities NT98_709 SM00843 NT98_709 NT98_71 SM00421 helix_turn_helix, Lux Regulon NT98_71 SM00448 cheY-homologous receiver domain NT98_714 SM00422 helix_turn_helix, mercury resistance NT98_724 SM00354 helix_turn _helix lactose operon repressor NT98_73 SM00530 Helix-turn-helix XRE-family like proteins NT98_730 SM00448 cheY-homologous receiver domain NT98_730 SM00862 Transcriptional regulatory protein, C terminal NT98_730 SM01043 Bacterial transcriptional activator domain NT98_731 SM00327 von Willebrand factor (vWF) type A domain NT98_734 SM00387 Histidine kinase-like ATPases NT98_734 SM00388 His Kinase A (phosphoacceptor) domain NT98_734 SM00448 cheY-homologous receiver domain NT98_738 SM00116 Domain in cystathionine beta-synthase and other proteins. NT98_741 SM01266 NT98_741 NT98_745 SM00363 S4 RNA-binding domain NT98_749 SM00363 S4 RNA-binding domain NT98_749 SM01390 NT98_749 NT98_75 SM00052 Putative diguanylate phosphodiesterase NT98_75 SM00267 diguanylate cyclase NT98_757 SM00981 NT98_757 NT98_77 SM00155 Phospholipase D. Active site motifs. NT98_781 SM01002 Alanine dehydrogenase/PNT, C-terminal domain NT98_781 SM01003 Alanine dehydrogenase/PNT, N-terminal domain NT98_783 SM00530 Helix-turn-helix XRE-family like proteins NT98_795 SM00849 Metallo-beta-lactamase superfamily NT98_797 SM00116 Domain in cystathionine beta-synthase and other proteins. NT98_8 SM00448 cheY-homologous receiver domain NT98_8 SM00850 LytTr DNA-binding domain NT98_805 SM00481 DNA polymerase alpha chain like domain NT98_806 SM00919 Malic enzyme, NAD binding domain NT98_806 SM01274 NT98_806 NT98_807 SM00345 helix_turn_helix gluconate operon transcriptional repressor NT98_816 SM01329 NT98_816 NT98_821 SM00448 cheY-homologous receiver domain NT98_821 SM00862 Transcriptional regulatory protein, C terminal NT98_822 SM00091 PAS domain NT98_822 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NT98_822 SM00387 Histidine kinase-like ATPases NT98_822 SM00388 His Kinase A (phosphoacceptor) domain NT98_823 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NT98_823 SM00474 3'-5' exonuclease NT98_823 SM00475 5'-3' exonuclease NT98_823 SM00482 DNA polymerase A domain NT98_824 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain NT98_824 SM01232 NT98_824 NT98_827 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NT98_832 SM00382 ATPases associated with a variety of cellular activities NT98_834 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NT98_846 SM00967 RNA 2'-O ribose methyltransferase substrate binding NT98_848 SM00873 B3/4 domain NT98_848 SM00874 tRNA synthetase B5 domain NT98_848 SM00896 Ferredoxin-fold anticodon binding domain NT98_855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NT98_855 SM00481 DNA polymerase alpha chain like domain NT98_855 SM00483 DNA polymerase X family NT98_856 SM00463 Small MutS-related domain NT98_856 SM00533 DNA-binding domain of DNA mismatch repair MUTS family NT98_856 SM00534 ATPase domain of DNA mismatch repair MUTS family NT98_858 SM00363 S4 RNA-binding domain NT98_860 SM00725 NEAr Transporter domain NT98_861 SM00725 NEAr Transporter domain NT98_862 SM00725 NEAr Transporter domain NT98_865 SM00382 ATPases associated with a variety of cellular activities NT98_868 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NT98_87 SM00448 cheY-homologous receiver domain NT98_871 SM00448 cheY-homologous receiver domain NT98_871 SM00862 Transcriptional regulatory protein, C terminal NT98_872 SM00387 Histidine kinase-like ATPases NT98_872 SM00388 His Kinase A (phosphoacceptor) domain NT98_873 SM00382 ATPases associated with a variety of cellular activities NT98_884 SM00893 Electron transfer flavoprotein domain NT98_885 SM00893 Electron transfer flavoprotein domain NT98_887 SM00465 GIY-YIG type nucleases (URI domain) NT98_898 SM00382 ATPases associated with a variety of cellular activities NT98_903 SM00530 Helix-turn-helix XRE-family like proteins NT98_907 SM00421 helix_turn_helix, Lux Regulon NT98_91 SM00357 Cold shock protein domain NT98_91 SM00382 ATPases associated with a variety of cellular activities NT98_91 SM00959 Rho termination factor, N-terminal domain NT98_922 SM00530 Helix-turn-helix XRE-family like proteins NT98_925 SM00530 Helix-turn-helix XRE-family like proteins NT98_927 SM00857 Resolvase, N terminal domain NT98_928 SM00857 Resolvase, N terminal domain NT98_932 SM00479 NT98_932 NT98_936 SM00857 Resolvase, N terminal domain NT98_94 SM00937 NT98_94 NT98_945 SM00909 Sporulation and spore germination NT98_957 SM00382 ATPases associated with a variety of cellular activities NT98_957 SM00994 ClpX C4-type zinc finger NT98_957 SM01086 C-terminal, D2-small domain, of ClpB protein NT98_958 SM00382 ATPases associated with a variety of cellular activities NT98_959 SM00382 ATPases associated with a variety of cellular activities NT98_959 SM00464 Found in ATP-dependent protease La (LON) NT98_962 SM00347 helix_turn_helix multiple antibiotic resistance protein NT98_967 SM01004 Delta-aminolevulinic acid dehydratase NT98_969 SM00257 Lysin motif NT98_987 SM01317 NT98_987 NT98_989 SM00448 cheY-homologous receiver domain NT98_989 SM00862 Transcriptional regulatory protein, C terminal NT98_990 SM00387 Histidine kinase-like ATPases NT98_991 SM00382 ATPases associated with a variety of cellular activities