locus-tag class description BG11_1 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BG11_1 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BG11_1 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BG11_10 PF00350 Dynamin family BG11_100 PF03788 LrgA family BG11_1000 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BG11_1003 PF06081 Aromatic acid exporter family member 1 BG11_1008 PF00561 alpha/beta hydrolase fold BG11_1009 PF00392 Bacterial regulatory proteins, gntR family BG11_1009 PF00155 Aminotransferase class I and II BG11_101 PF03466 LysR substrate binding domain BG11_101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_1010 PF00892 EamA-like transporter family BG11_1011 PF11638 DnaA N-terminal domain BG11_1011 PF00308 Bacterial dnaA protein BG11_1011 PF08299 Bacterial dnaA protein helix-turn-helix BG11_1012 PF00344 SecY translocase BG11_1016 PF07504 Fungalysin/Thermolysin Propeptide Motif BG11_1016 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG11_1016 PF03413 Peptidase propeptide and YPEB domain BG11_1016 PF01447 Thermolysin metallopeptidase, catalytic domain BG11_1017 PF03714 Bacterial pullanase-associated domain BG11_1017 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG11_1017 PF00128 Alpha amylase, catalytic domain BG11_1019 PF00550 Phosphopantetheine attachment site BG11_1019 PF00668 Condensation domain BG11_1019 PF13193 AMP-binding enzyme C-terminal domain BG11_1019 PF00501 AMP-binding enzyme BG11_1020 PF00282 Pyridoxal-dependent decarboxylase conserved domain BG11_1021 PF07859 alpha/beta hydrolase fold BG11_103 PF00005 ABC transporter BG11_1030 PF01266 FAD dependent oxidoreductase BG11_1038 PF01541 GIY-YIG catalytic domain BG11_1040 PF02673 Bacitracin resistance protein BacA BG11_1043 PF12867 DinB superfamily BG11_1045 PF08000 Bacterial PH domain BG11_1046 PF01734 Patatin-like phospholipase BG11_1050 PF09234 Domain of unknown function (DUF1963) BG11_1054 PF12706 Beta-lactamase superfamily domain BG11_1058 PF00293 NUDIX domain BG11_1059 PF00712 DNA polymerase III beta subunit, N-terminal domain BG11_1059 PF02768 DNA polymerase III beta subunit, C-terminal domain BG11_1059 PF02767 DNA polymerase III beta subunit, central domain BG11_1060 PF09297 NADH pyrophosphatase zinc ribbon domain BG11_1060 PF00293 NUDIX domain BG11_1063 PF07690 Major Facilitator Superfamily BG11_1067 PF00293 NUDIX domain BG11_107 PF02683 Cytochrome C biogenesis protein transmembrane region BG11_1070 PF01270 Glycosyl hydrolases family 8 BG11_1071 PF00892 EamA-like transporter family BG11_1072 PF00155 Aminotransferase class I and II BG11_1072 PF00392 Bacterial regulatory proteins, gntR family BG11_1075 PF03009 Glycerophosphoryl diester phosphodiesterase family BG11_1079 PF07690 Major Facilitator Superfamily BG11_108 PF07301 Protein of unknown function (DUF1453) BG11_1081 PF00144 Beta-lactamase BG11_1084 PF01965 DJ-1/PfpI family BG11_1090 PF11954 Domain of unknown function (DUF3471) BG11_1090 PF00144 Beta-lactamase BG11_1093 PF01569 PAP2 superfamily BG11_1094 PF08240 Alcohol dehydrogenase GroES-like domain BG11_1094 PF00107 Zinc-binding dehydrogenase BG11_1097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1097 PF00512 His Kinase A (phospho-acceptor) domain BG11_11 PF00884 Sulfatase BG11_1100 PF00005 ABC transporter BG11_1100 PF12558 ATP-binding cassette cobalt transporter BG11_1101 PF07155 ECF-type riboflavin transporter, S component BG11_1102 PF01177 Asp/Glu/Hydantoin racemase BG11_1103 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG11_1105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1105 PF13426 PAS domain BG11_1105 PF13188 PAS domain BG11_1105 PF00512 His Kinase A (phospho-acceptor) domain BG11_1105 PF00989 PAS fold BG11_1108 PF00067 Cytochrome P450 BG11_111 PF11084 Protein of unknown function (DUF2621) BG11_1110 PF07561 Domain of Unknown Function (DUF1540) BG11_1111 PF00132 Bacterial transferase hexapeptide (six repeats) BG11_1113 PF00067 Cytochrome P450 BG11_1122 PF01510 N-acetylmuramoyl-L-alanine amidase BG11_114 PF01209 ubiE/COQ5 methyltransferase family BG11_1144 PF00589 Phage integrase family BG11_1154 PF07883 Cupin domain BG11_116 PF09021 HutP BG11_1164 PF07319 Primosomal protein DnaI N-terminus BG11_1164 PF01695 IstB-like ATP binding protein BG11_117 PF00221 Aromatic amino acid lyase BG11_1174 PF14659 Phage integrase, N-terminal SAM-like domain BG11_1174 PF00589 Phage integrase family BG11_118 PF17391 Urocanase N-terminal domain BG11_118 PF17392 Urocanase C-terminal domain BG11_118 PF01175 Urocanase Rossmann-like domain BG11_1182 PF03070 TENA/THI-4/PQQC family BG11_1183 PF07478 D-ala D-ala ligase C-terminus BG11_1183 PF01820 D-ala D-ala ligase N-terminus BG11_1184 PF00155 Aminotransferase class I and II BG11_1184 PF00392 Bacterial regulatory proteins, gntR family BG11_1185 PF03447 Homoserine dehydrogenase, NAD binding domain BG11_1185 PF00742 Homoserine dehydrogenase BG11_1185 PF01842 ACT domain BG11_1189 PF02687 FtsX-like permease family BG11_119 PF01979 Amidohydrolase family BG11_1190 PF00005 ABC transporter BG11_1195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1196 PF00486 Transcriptional regulatory protein, C terminal BG11_1196 PF00072 Response regulator receiver domain BG11_1198 PF07486 Cell Wall Hydrolase BG11_1199 PF01921 tRNA synthetases class I (K) BG11_12 PF03275 UDP-galactopyranose mutase BG11_120 PF00491 Arginase family BG11_1201 PF08450 SMP-30/Gluconolactonase/LRE-like region BG11_1205 PF08240 Alcohol dehydrogenase GroES-like domain BG11_1205 PF00107 Zinc-binding dehydrogenase BG11_1208 PF00155 Aminotransferase class I and II BG11_1208 PF00392 Bacterial regulatory proteins, gntR family BG11_121 PF02559 CarD-like/TRCF domain BG11_1211 PF12833 Helix-turn-helix domain BG11_1212 PF01636 Phosphotransferase enzyme family BG11_1216 PF07690 Major Facilitator Superfamily BG11_1217 PF09278 MerR, DNA binding BG11_1217 PF00376 MerR family regulatory protein BG11_1218 PF00144 Beta-lactamase BG11_122 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BG11_1224 PF01447 Thermolysin metallopeptidase, catalytic domain BG11_1224 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG11_1224 PF07504 Fungalysin/Thermolysin Propeptide Motif BG11_1224 PF03413 Peptidase propeptide and YPEB domain BG11_1228 PF01048 Phosphorylase superfamily BG11_1229 PF13021 Domain of unknown function (DUF3885) BG11_123 PF01645 Conserved region in glutamate synthase BG11_1230 PF01966 HD domain BG11_1231 PF00072 Response regulator receiver domain BG11_1231 PF00486 Transcriptional regulatory protein, C terminal BG11_1232 PF00512 His Kinase A (phospho-acceptor) domain BG11_1232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1233 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_1233 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_1234 PF05163 DinB family BG11_1236 PF00485 Phosphoribulokinase / Uridine kinase family BG11_1237 PF00583 Acetyltransferase (GNAT) family BG11_1239 PF16177 Acetyl-coenzyme A synthetase N-terminus BG11_1239 PF13193 AMP-binding enzyme C-terminal domain BG11_1239 PF00501 AMP-binding enzyme BG11_124 PF00474 Sodium:solute symporter family BG11_1240 PF01039 Carboxyl transferase domain BG11_1241 PF00378 Enoyl-CoA hydratase/isomerase BG11_1242 PF00682 HMGL-like BG11_1243 PF00364 Biotin-requiring enzyme BG11_1244 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG11_1244 PF02785 Biotin carboxylase C-terminal domain BG11_1244 PF00289 Biotin carboxylase, N-terminal domain BG11_1245 PF02770 Acyl-CoA dehydrogenase, middle domain BG11_1245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG11_1245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG11_1248 PF00440 Bacterial regulatory proteins, tetR family BG11_1248 PF08359 YsiA-like protein, C-terminal region BG11_125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_1250 PF00005 ABC transporter BG11_1253 PF00581 Rhodanese-like domain BG11_1254 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_1256 PF00990 Diguanylate cyclase, GGDEF domain BG11_1256 PF00563 EAL domain BG11_1256 PF03707 Bacterial signalling protein N terminal repeat BG11_1258 PF00440 Bacterial regulatory proteins, tetR family BG11_1259 PF07968 Leukocidin/Hemolysin toxin family BG11_126 PF01738 Dienelactone hydrolase family BG11_1260 PF01520 N-acetylmuramoyl-L-alanine amidase BG11_1260 PF00395 S-layer homology domain BG11_1262 PF02557 D-alanyl-D-alanine carboxypeptidase BG11_1265 PF01381 Helix-turn-helix BG11_1266 PF18801 response regulator aspartate phosphatase H, N terminal BG11_1268 PF00149 Calcineurin-like phosphoesterase BG11_1268 PF02872 5'-nucleotidase, C-terminal domain BG11_127 PF00512 His Kinase A (phospho-acceptor) domain BG11_127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_127 PF00989 PAS fold BG11_127 PF13188 PAS domain BG11_127 PF13426 PAS domain BG11_1271 PF04962 KduI/IolB family BG11_1272 PF01116 Fructose-bisphosphate aldolase class-II BG11_1273 PF01261 Xylose isomerase-like TIM barrel BG11_1274 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG11_1274 PF00205 Thiamine pyrophosphate enzyme, central domain BG11_1274 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG11_1275 PF00171 Aldehyde dehydrogenase family BG11_1276 PF00294 pfkB family carbohydrate kinase BG11_1277 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG11_1277 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG11_1278 PF07690 Major Facilitator Superfamily BG11_1279 PF00356 Bacterial regulatory proteins, lacI family BG11_1280 PF01569 PAP2 superfamily BG11_1285 PF04542 Sigma-70 region 2 BG11_1285 PF08281 Sigma-70, region 4 BG11_1288 PF07687 Peptidase dimerisation domain BG11_1288 PF01546 Peptidase family M20/M25/M40 BG11_129 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_129 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_1293 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BG11_1294 PF00300 Histidine phosphatase superfamily (branch 1) BG11_1295 PF12802 MarR family BG11_1296 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG11_1296 PF00205 Thiamine pyrophosphate enzyme, central domain BG11_1296 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG11_1297 PF08241 Methyltransferase domain BG11_1299 PF03848 Tellurite resistance protein TehB BG11_1299 PF09313 Domain of unknown function (DUF1971) BG11_13 PF07486 Cell Wall Hydrolase BG11_1300 PF02687 FtsX-like permease family BG11_1300 PF12704 MacB-like periplasmic core domain BG11_1300 PF00005 ABC transporter BG11_1303 PF00440 Bacterial regulatory proteins, tetR family BG11_1303 PF17932 Tetracyclin repressor-like, C-terminal domain BG11_1306 PF00270 DEAD/DEAH box helicase BG11_1306 PF00271 Helicase conserved C-terminal domain BG11_1309 PF00753 Metallo-beta-lactamase superfamily BG11_1309 PF16123 Hydroxyacylglutathione hydrolase C-terminus BG11_1313 PF00291 Pyridoxal-phosphate dependent enzyme BG11_1314 PF00266 Aminotransferase class-V BG11_1315 PF02660 Glycerol-3-phosphate acyltransferase BG11_1316 PF01869 BadF/BadG/BcrA/BcrD ATPase family BG11_1317 PF03702 Anhydro-N-acetylmuramic acid kinase BG11_1319 PF02378 Phosphotransferase system, EIIC BG11_1321 PF02638 Glycosyl hydrolase-like 10 BG11_1326 PF12680 SnoaL-like domain BG11_1326 PF08281 Sigma-70, region 4 BG11_1326 PF04542 Sigma-70 region 2 BG11_1327 PF00890 FAD binding domain BG11_1329 PF13291 ACT domain BG11_1329 PF02824 TGS domain BG11_1329 PF04607 Region found in RelA / SpoT proteins BG11_1336 PF07883 Cupin domain BG11_1336 PF01381 Helix-turn-helix BG11_1337 PF01810 LysE type translocator BG11_1340 PF00005 ABC transporter BG11_1340 PF00664 ABC transporter transmembrane region BG11_1341 PF00664 ABC transporter transmembrane region BG11_1341 PF00005 ABC transporter BG11_1344 PF03473 MOSC domain BG11_1344 PF03475 3-alpha domain BG11_1345 PF03466 LysR substrate binding domain BG11_1345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_1348 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG11_1348 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG11_1349 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_1349 PF03466 LysR substrate binding domain BG11_135 PF05532 CsbD-like BG11_136 PF05532 CsbD-like BG11_1360 PF00313 'Cold-shock' DNA-binding domain BG11_1362 PF13302 Acetyltransferase (GNAT) domain BG11_1370 PF00583 Acetyltransferase (GNAT) family BG11_1373 PF00302 Chloramphenicol acetyltransferase BG11_1375 PF03176 MMPL family BG11_1377 PF16123 Hydroxyacylglutathione hydrolase C-terminus BG11_1377 PF00753 Metallo-beta-lactamase superfamily BG11_1384 PF13649 Methyltransferase domain BG11_1388 PF12146 Serine aminopeptidase, S33 BG11_139 PF00501 AMP-binding enzyme BG11_139 PF13193 AMP-binding enzyme C-terminal domain BG11_1390 PF00005 ABC transporter BG11_1391 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG11_1391 PF02824 TGS domain BG11_1391 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG11_1391 PF03129 Anticodon binding domain BG11_1392 PF00849 RNA pseudouridylate synthase BG11_1392 PF01479 S4 domain BG11_1393 PF16291 Domain of unknown function (DUF4937 BG11_1396 PF01235 Sodium:alanine symporter family BG11_1397 PF00082 Subtilase family BG11_1398 PF05163 DinB family BG11_14 PF00082 Subtilase family BG11_140 PF02632 BioY family BG11_1400 PF00216 Bacterial DNA-binding protein BG11_1403 PF07690 Major Facilitator Superfamily BG11_1404 PF03621 MbtH-like protein BG11_1405 PF00550 Phosphopantetheine attachment site BG11_1405 PF00975 Thioesterase domain BG11_1405 PF00668 Condensation domain BG11_1405 PF00501 AMP-binding enzyme BG11_1405 PF13193 AMP-binding enzyme C-terminal domain BG11_1406 PF00550 Phosphopantetheine attachment site BG11_1406 PF00857 Isochorismatase family BG11_1407 PF13193 AMP-binding enzyme C-terminal domain BG11_1407 PF00501 AMP-binding enzyme BG11_1408 PF00425 chorismate binding enzyme BG11_1409 PF00106 short chain dehydrogenase BG11_141 PF13193 AMP-binding enzyme C-terminal domain BG11_141 PF00501 AMP-binding enzyme BG11_1410 PF07690 Major Facilitator Superfamily BG11_1412 PF01022 Bacterial regulatory protein, arsR family BG11_1414 PF13476 AAA domain BG11_1415 PF12320 Type 5 capsule protein repressor C-terminal domain BG11_1415 PF00149 Calcineurin-like phosphoesterase BG11_1416 PF10763 Protein of unknown function (DUF2584) BG11_1418 PF00378 Enoyl-CoA hydratase/isomerase BG11_1419 PF01810 LysE type translocator BG11_142 PF00108 Thiolase, N-terminal domain BG11_142 PF02803 Thiolase, C-terminal domain BG11_1420 PF00171 Aldehyde dehydrogenase family BG11_1421 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG11_1421 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG11_1422 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG11_1422 PF02770 Acyl-CoA dehydrogenase, middle domain BG11_1422 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG11_1424 PF03972 MmgE/PrpD family BG11_1425 PF00285 Citrate synthase, C-terminal domain BG11_1426 PF01521 Iron-sulphur cluster biosynthesis BG11_1427 PF07690 Major Facilitator Superfamily BG11_1428 PF00912 Transglycosylase BG11_1428 PF00905 Penicillin binding protein transpeptidase domain BG11_1432 PF10676 Spore germination protein gerPA/gerPF BG11_144 PF13344 Haloacid dehalogenase-like hydrolase BG11_144 PF00293 NUDIX domain BG11_145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG11_145 PF02272 DHHA1 domain BG11_145 PF01411 tRNA synthetases class II (A) BG11_1452 PF04471 Restriction endonuclease BG11_1455 PF03424 Carbohydrate binding domain (family 17/28) BG11_1455 PF00395 S-layer homology domain BG11_1455 PF00150 Cellulase (glycosyl hydrolase family 5) BG11_1456 PF14436 Bacterial EndoU nuclease BG11_1456 PF04740 LXG domain of WXG superfamily BG11_1458 PF00085 Thioredoxin BG11_1459 PF01569 PAP2 superfamily BG11_1460 PF01545 Cation efflux family BG11_1460 PF16916 Dimerisation domain of Zinc Transporter BG11_1461 PF07070 SpoOM protein BG11_1464 PF14162 YozD-like protein BG11_1467 PF06855 YozE SAM-like fold BG11_1468 PF14122 YokU-like protein, putative antitoxin BG11_1469 PF12544 Lysine-2,3-aminomutase BG11_147 PF07690 Major Facilitator Superfamily BG11_1470 PF02954 Bacterial regulatory protein, Fis family BG11_1470 PF00158 Sigma-54 interaction domain BG11_1470 PF13426 PAS domain BG11_1471 PF00583 Acetyltransferase (GNAT) family BG11_1472 PF01546 Peptidase family M20/M25/M40 BG11_1472 PF07687 Peptidase dimerisation domain BG11_1473 PF01144 Coenzyme A transferase BG11_1474 PF01144 Coenzyme A transferase BG11_1475 PF00202 Aminotransferase class-III BG11_1477 PF09385 Histidine kinase N terminal BG11_1478 PF07997 Protein of unknown function (DUF1694) BG11_1479 PF00171 Aldehyde dehydrogenase family BG11_1480 PF01595 Cyclin M transmembrane N-terminal domain BG11_1480 PF03471 Transporter associated domain BG11_1480 PF00571 CBS domain BG11_1486 PF13520 Amino acid permease BG11_1487 PF00528 Binding-protein-dependent transport system inner membrane component BG11_1488 PF00005 ABC transporter BG11_1488 PF00571 CBS domain BG11_149 PF08179 Small acid-soluble spore protein P family BG11_1491 PF03358 NADPH-dependent FMN reductase BG11_1494 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG11_1494 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG11_1495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG11_1495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG11_1497 PF00144 Beta-lactamase BG11_15 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BG11_1500 PF00107 Zinc-binding dehydrogenase BG11_1500 PF08240 Alcohol dehydrogenase GroES-like domain BG11_1501 PF01418 Helix-turn-helix domain, rpiR family BG11_1501 PF01380 SIS domain BG11_1503 PF00196 Bacterial regulatory proteins, luxR family BG11_1503 PF00072 Response regulator receiver domain BG11_1504 PF13185 GAF domain BG11_1504 PF07730 Histidine kinase BG11_1505 PF00924 Mechanosensitive ion channel BG11_1506 PF00011 Hsp20/alpha crystallin family BG11_1507 PF00293 NUDIX domain BG11_1508 PF00857 Isochorismatase family BG11_151 PF01522 Polysaccharide deacetylase BG11_1511 PF00881 Nitroreductase family BG11_1512 PF01063 Amino-transferase class IV BG11_1513 PF01497 Periplasmic binding protein BG11_1517 PF13537 Glutamine amidotransferase domain BG11_1517 PF00733 Asparagine synthase BG11_1518 PF00011 Hsp20/alpha crystallin family BG11_1519 PF02630 SCO1/SenC BG11_1521 PF02645 Uncharacterised protein, DegV family COG1307 BG11_1523 PF00902 Sec-independent protein translocase protein (TatC) BG11_1524 PF02416 mttA/Hcf106 family BG11_1525 PF03006 Haemolysin-III related BG11_1526 PF01553 Acyltransferase BG11_1527 PF02525 Flavodoxin-like fold BG11_1528 PF05223 NTF2-like N-terminal transpeptidase domain BG11_1528 PF03717 Penicillin-binding Protein dimerisation domain BG11_1528 PF00905 Penicillin binding protein transpeptidase domain BG11_1529 PF00186 Dihydrofolate reductase BG11_153 PF00330 Aconitase family (aconitate hydratase) BG11_153 PF00694 Aconitase C-terminal domain BG11_1530 PF00303 Thymidylate synthase BG11_1531 PF00144 Beta-lactamase BG11_1531 PF07930 D-aminopeptidase, domain B BG11_1534 PF13419 Haloacid dehalogenase-like hydrolase BG11_1535 PF14005 YpjP-like protein BG11_1536 PF05975 Bacterial ABC transporter protein EcsB BG11_1537 PF00005 ABC transporter BG11_154 PF03412 Peptidase C39 family BG11_154 PF00005 ABC transporter BG11_154 PF00664 ABC transporter transmembrane region BG11_1540 PF00583 Acetyltransferase (GNAT) family BG11_1541 PF01980 tRNA-methyltransferase O BG11_1542 PF01177 Asp/Glu/Hydantoin racemase BG11_1543 PF00465 Iron-containing alcohol dehydrogenase BG11_1545 PF13419 Haloacid dehalogenase-like hydrolase BG11_1546 PF10997 Alternate to MurJ BG11_1549 PF00209 Sodium:neurotransmitter symporter family BG11_1552 PF00512 His Kinase A (phospho-acceptor) domain BG11_1552 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1552 PF00672 HAMP domain BG11_1553 PF00486 Transcriptional regulatory protein, C terminal BG11_1553 PF00072 Response regulator receiver domain BG11_1554 PF00939 Sodium:sulfate symporter transmembrane region BG11_1555 PF02595 Glycerate kinase family BG11_156 PF00578 AhpC/TSA family BG11_1566 PF12538 DNA transporter BG11_1566 PF01580 FtsK/SpoIIIE family BG11_157 PF14579 Helix-hairpin-helix motif BG11_157 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG11_157 PF02811 PHP domain BG11_157 PF11490 DNA polymerase III polC-type N-terminus II BG11_157 PF00929 Exonuclease BG11_157 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG11_1570 PF01336 OB-fold nucleic acid binding domain BG11_1570 PF00152 tRNA synthetases class II (D, K and N) BG11_1571 PF01225 Mur ligase family, catalytic domain BG11_1571 PF02875 Mur ligase family, glutamate ligase domain BG11_1571 PF08245 Mur ligase middle domain BG11_1574 PF00133 tRNA synthetases class I (I, L, M and V) BG11_1574 PF08264 Anticodon-binding domain of tRNA BG11_1578 PF03485 Arginyl tRNA synthetase N terminal domain BG11_1578 PF05746 DALR anticodon binding domain BG11_1578 PF00750 tRNA synthetases class I (R) BG11_1579 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_1579 PF01348 Type II intron maturase BG11_158 PF13040 Fur-regulated basic protein B BG11_1581 PF06491 Disulphide isomerase BG11_1583 PF08712 Scaffold protein Nfu/NifU N terminal BG11_1583 PF13769 Virulence factor BG11_1584 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_1585 PF00436 Single-strand binding protein family BG11_1588 PF00005 ABC transporter BG11_1588 PF12848 ABC transporter BG11_1588 PF16326 ABC transporter C-terminal domain BG11_1589 PF01966 HD domain BG11_159 PF08177 Small acid-soluble spore protein N family BG11_1593 PF04232 Stage V sporulation protein S (SpoVS) BG11_1600 PF01814 Hemerythrin HHE cation binding domain BG11_1600 PF04405 Domain of Unknown function (DUF542) BG11_1601 PF18267 Rubredoxin NAD+ reductase C-terminal domain BG11_1601 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_1601 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BG11_1601 PF04324 BFD-like [2Fe-2S] binding domain BG11_1601 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BG11_1602 PF00355 Rieske [2Fe-2S] domain BG11_1603 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG11_1604 PF01903 CbiX BG11_1607 PF07690 Major Facilitator Superfamily BG11_1609 PF02391 MoaE protein BG11_161 PF00704 Glycosyl hydrolases family 18 BG11_161 PF01476 LysM domain BG11_1610 PF03453 MoeA N-terminal region (domain I and II) BG11_1610 PF03454 MoeA C-terminal region (domain IV) BG11_1610 PF00994 Probable molybdopterin binding domain BG11_1611 PF00899 ThiF family BG11_1612 PF06463 Molybdenum Cofactor Synthesis C BG11_1612 PF04055 Radical SAM superfamily BG11_1613 PF00027 Cyclic nucleotide-binding domain BG11_1613 PF00325 Bacterial regulatory proteins, crp family BG11_1616 PF00857 Isochorismatase family BG11_1617 PF02566 OsmC-like protein BG11_1618 PF01521 Iron-sulphur cluster biosynthesis BG11_1619 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_1619 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG11_162 PF03061 Thioesterase superfamily BG11_1620 PF00085 Thioredoxin BG11_1621 PF02082 Transcriptional regulator BG11_1623 PF02665 Nitrate reductase gamma subunit BG11_1624 PF02613 Nitrate reductase delta subunit BG11_1625 PF13247 4Fe-4S dicluster domain BG11_1625 PF14711 Respiratory nitrate reductase beta C-terminal BG11_1626 PF00384 Molybdopterin oxidoreductase BG11_1626 PF01568 Molydopterin dinucleotide binding domain BG11_1626 PF14710 Respiratory nitrate reductase alpha N-terminal BG11_1627 PF17863 AAA lid domain BG11_1627 PF07726 ATPase family associated with various cellular activities (AAA) BG11_1628 PF01882 Protein of unknown function DUF58 BG11_1629 PF13559 Domain of unknown function (DUF4129) BG11_1629 PF01841 Transglutaminase-like superfamily BG11_1629 PF11992 Domain of unknown function (DUF3488) BG11_163 PF01521 Iron-sulphur cluster biosynthesis BG11_1630 PF00255 Glutathione peroxidase BG11_1634 PF03109 ABC1 family BG11_1636 PF08281 Sigma-70, region 4 BG11_1636 PF04542 Sigma-70 region 2 BG11_1637 PF00107 Zinc-binding dehydrogenase BG11_1637 PF08240 Alcohol dehydrogenase GroES-like domain BG11_1639 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_164 PF02660 Glycerol-3-phosphate acyltransferase BG11_1640 PF01261 Xylose isomerase-like TIM barrel BG11_1641 PF00270 DEAD/DEAH box helicase BG11_1641 PF00271 Helicase conserved C-terminal domain BG11_1643 PF01268 Formate--tetrahydrofolate ligase BG11_1644 PF01209 ubiE/COQ5 methyltransferase family BG11_1649 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG11_165 PF13597 Anaerobic ribonucleoside-triphosphate reductase BG11_165 PF03477 ATP cone domain BG11_1651 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_166 PF04055 Radical SAM superfamily BG11_1663 PF00583 Acetyltransferase (GNAT) family BG11_1669 PF00392 Bacterial regulatory proteins, gntR family BG11_1669 PF00155 Aminotransferase class I and II BG11_167 PF00072 Response regulator receiver domain BG11_167 PF00486 Transcriptional regulatory protein, C terminal BG11_1670 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_1670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_1671 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG11_1675 PF01168 Alanine racemase, N-terminal domain BG11_1675 PF00842 Alanine racemase, C-terminal domain BG11_1678 PF00300 Histidine phosphatase superfamily (branch 1) BG11_1679 PF01145 SPFH domain / Band 7 family BG11_168 PF13180 PDZ domain BG11_1681 PF07690 Major Facilitator Superfamily BG11_1682 PF01425 Amidase BG11_1684 PF02557 D-alanyl-D-alanine carboxypeptidase BG11_1686 PF07454 Stage II sporulation protein P (SpoIIP) BG11_169 PF13380 CoA binding domain BG11_1690 PF01588 Putative tRNA binding domain BG11_1691 PF05525 Branched-chain amino acid transport protein BG11_1694 PF00571 CBS domain BG11_1694 PF03471 Transporter associated domain BG11_1694 PF01595 Cyclin M transmembrane N-terminal domain BG11_1695 PF04306 Protein of unknown function (DUF456) BG11_1696 PF13460 NAD(P)H-binding BG11_1699 PF13091 PLD-like domain BG11_1699 PF13396 Phospholipase_D-nuclease N-terminal BG11_17 PF02585 GlcNAc-PI de-N-acetylase BG11_170 PF01751 Toprim domain BG11_170 PF00986 DNA gyrase B subunit, carboxyl terminus BG11_170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_170 PF00204 DNA gyrase B BG11_1700 PF03061 Thioesterase superfamily BG11_1701 PF09323 Domain of unknown function (DUF1980) BG11_1702 PF03773 Predicted permease BG11_1704 PF14667 Polysaccharide biosynthesis C-terminal domain BG11_1704 PF01943 Polysaccharide biosynthesis protein BG11_1705 PF09335 SNARE associated Golgi protein BG11_1706 PF00293 NUDIX domain BG11_1707 PF08757 CotH kinase protein BG11_1709 PF00300 Histidine phosphatase superfamily (branch 1) BG11_171 PF00521 DNA gyrase/topoisomerase IV, subunit A BG11_171 PF03989 DNA gyrase C-terminal domain, beta-propeller BG11_1711 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_1712 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_1714 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BG11_1714 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BG11_1715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BG11_1716 PF13460 NAD(P)H-binding BG11_1718 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BG11_1718 PF01297 Zinc-uptake complex component A periplasmic BG11_172 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG11_172 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG11_1729 PF00583 Acetyltransferase (GNAT) family BG11_1730 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG11_1730 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG11_1731 PF00248 Aldo/keto reductase family BG11_1733 PF01593 Flavin containing amine oxidoreductase BG11_1735 PF00296 Luciferase-like monooxygenase BG11_1738 PF00210 Ferritin-like domain BG11_174 PF00005 ABC transporter BG11_174 PF13732 Domain of unknown function (DUF4162) BG11_1742 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_1742 PF02743 Cache domain BG11_1742 PF00672 HAMP domain BG11_1743 PF03193 RsgA GTPase BG11_1747 PF07690 Major Facilitator Superfamily BG11_1748 PF00248 Aldo/keto reductase family BG11_1749 PF01022 Bacterial regulatory protein, arsR family BG11_1750 PF00082 Subtilase family BG11_1751 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG11_1751 PF18277 AbrB C-terminal domain BG11_1752 PF02687 FtsX-like permease family BG11_1753 PF02540 NAD synthase BG11_1754 PF00293 NUDIX domain BG11_1754 PF13344 Haloacid dehalogenase-like hydrolase BG11_1759 PF01734 Patatin-like phospholipase BG11_176 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_1761 PF01810 LysE type translocator BG11_1762 PF07690 Major Facilitator Superfamily BG11_1763 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_1764 PF01261 Xylose isomerase-like TIM barrel BG11_1767 PF13193 AMP-binding enzyme C-terminal domain BG11_1767 PF00501 AMP-binding enzyme BG11_1768 PF06276 Ferric iron reductase FhuF-like transporter BG11_1768 PF04183 IucA / IucC family BG11_1769 PF04183 IucA / IucC family BG11_1769 PF06276 Ferric iron reductase FhuF-like transporter BG11_1770 PF00583 Acetyltransferase (GNAT) family BG11_1771 PF02308 MgtC family BG11_1773 PF01522 Polysaccharide deacetylase BG11_1774 PF00512 His Kinase A (phospho-acceptor) domain BG11_1774 PF16736 Single Cache-like BG11_1774 PF00989 PAS fold BG11_1774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1775 PF00486 Transcriptional regulatory protein, C terminal BG11_1775 PF00072 Response regulator receiver domain BG11_1777 PF03816 Cell envelope-related transcriptional attenuator domain BG11_178 PF08281 Sigma-70, region 4 BG11_178 PF04542 Sigma-70 region 2 BG11_1780 PF00288 GHMP kinases N terminal domain BG11_1780 PF08544 GHMP kinases C terminal BG11_1781 PF00291 Pyridoxal-phosphate dependent enzyme BG11_1782 PF01842 ACT domain BG11_1782 PF00742 Homoserine dehydrogenase BG11_1782 PF03447 Homoserine dehydrogenase, NAD binding domain BG11_1785 PF13630 SdpI/YhfL protein family BG11_1786 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BG11_1786 PF01522 Polysaccharide deacetylase BG11_1787 PF04439 Streptomycin adenylyltransferase BG11_1788 PF00106 short chain dehydrogenase BG11_1790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1790 PF00989 PAS fold BG11_1790 PF00512 His Kinase A (phospho-acceptor) domain BG11_1790 PF16736 Single Cache-like BG11_1791 PF00072 Response regulator receiver domain BG11_1791 PF00486 Transcriptional regulatory protein, C terminal BG11_1792 PF00005 ABC transporter BG11_1792 PF00664 ABC transporter transmembrane region BG11_1794 PF01476 LysM domain BG11_1794 PF00877 NlpC/P60 family BG11_1796 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_1796 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_1797 PF17676 LD-carboxypeptidase C-terminal domain BG11_1797 PF02016 LD-carboxypeptidase N-terminal domain BG11_18 PF00561 alpha/beta hydrolase fold BG11_18 PF00364 Biotin-requiring enzyme BG11_180 PF03816 Cell envelope-related transcriptional attenuator domain BG11_1800 PF00664 ABC transporter transmembrane region BG11_1800 PF00005 ABC transporter BG11_1801 PF00664 ABC transporter transmembrane region BG11_1801 PF00005 ABC transporter BG11_1802 PF02322 Cytochrome bd terminal oxidase subunit II BG11_1803 PF01654 Cytochrome bd terminal oxidase subunit I BG11_1805 PF01047 MarR family BG11_1809 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_1809 PF03466 LysR substrate binding domain BG11_181 PF00375 Sodium:dicarboxylate symporter family BG11_1811 PF02653 Branched-chain amino acid transport system / permease component BG11_1812 PF00005 ABC transporter BG11_1813 PF12399 Branched-chain amino acid ATP-binding cassette transporter BG11_1813 PF00005 ABC transporter BG11_1815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG11_1815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG11_1816 PF01575 MaoC like domain BG11_1817 PF13193 AMP-binding enzyme C-terminal domain BG11_1817 PF00501 AMP-binding enzyme BG11_182 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_1820 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG11_1820 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG11_1821 PF01593 Flavin containing amine oxidoreductase BG11_1822 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG11_1822 PF00056 lactate/malate dehydrogenase, NAD binding domain BG11_1823 PF01594 AI-2E family transporter BG11_1824 PF01425 Amidase BG11_1827 PF00881 Nitroreductase family BG11_1828 PF01323 DSBA-like thioredoxin domain BG11_1829 PF02082 Transcriptional regulator BG11_183 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_1830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_1830 PF03466 LysR substrate binding domain BG11_1831 PF00892 EamA-like transporter family BG11_1832 PF07987 Domain of unkown function (DUF1775) BG11_1833 PF04234 CopC domain BG11_1833 PF05425 Copper resistance protein D BG11_1833 PF13115 YtkA-like BG11_1835 PF05525 Branched-chain amino acid transport protein BG11_1836 PF02525 Flavodoxin-like fold BG11_184 PF13276 HTH-like domain BG11_184 PF13333 Integrase core domain BG11_184 PF00665 Integrase core domain BG11_1841 PF01551 Peptidase family M23 BG11_1842 PF07731 Multicopper oxidase BG11_1842 PF00394 Multicopper oxidase BG11_1842 PF07732 Multicopper oxidase BG11_1843 PF05195 Aminopeptidase P, N-terminal domain BG11_1843 PF00557 Metallopeptidase family M24 BG11_1847 PF05979 Bacterial protein of unknown function (DUF896) BG11_1848 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG11_1849 PF00591 Glycosyl transferase family, a/b domain BG11_1849 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BG11_1849 PF02885 Glycosyl transferase family, helical bundle domain BG11_1850 PF07662 Na+ dependent nucleoside transporter C-terminus BG11_1850 PF01773 Na+ dependent nucleoside transporter N-terminus BG11_1851 PF01791 DeoC/LacD family aldolase BG11_1852 PF04198 Putative sugar-binding domain BG11_1854 PF05791 Bacillus haemolytic enterotoxin (HBL) BG11_1855 PF05791 Bacillus haemolytic enterotoxin (HBL) BG11_1857 PF13520 Amino acid permease BG11_1859 PF02558 Ketopantoate reductase PanE/ApbA BG11_1859 PF08546 Ketopantoate reductase PanE/ApbA C terminal BG11_1862 PF01566 Natural resistance-associated macrophage protein BG11_1864 PF00512 His Kinase A (phospho-acceptor) domain BG11_1864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1865 PF00072 Response regulator receiver domain BG11_1865 PF00486 Transcriptional regulatory protein, C terminal BG11_1866 PF13302 Acetyltransferase (GNAT) domain BG11_1867 PF04055 Radical SAM superfamily BG11_1867 PF13186 Iron-sulfur cluster-binding domain BG11_187 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_1871 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_1872 PF01979 Amidohydrolase family BG11_1875 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BG11_1875 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BG11_1876 PF04397 LytTr DNA-binding domain BG11_1876 PF00072 Response regulator receiver domain BG11_1878 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BG11_1879 PF07690 Major Facilitator Superfamily BG11_188 PF08241 Methyltransferase domain BG11_1882 PF09587 Bacterial capsule synthesis protein PGA_cap BG11_1884 PF00585 C-terminal regulatory domain of Threonine dehydratase BG11_1884 PF00291 Pyridoxal-phosphate dependent enzyme BG11_1885 PF00920 Dehydratase family BG11_1886 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BG11_1886 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BG11_1887 PF10369 Small subunit of acetolactate synthase BG11_1888 PF00205 Thiamine pyrophosphate enzyme, central domain BG11_1888 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG11_1888 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG11_1889 PF01063 Amino-transferase class IV BG11_1891 PF01625 Peptide methionine sulfoxide reductase BG11_1895 PF04239 Protein of unknown function (DUF421) BG11_1897 PF03422 Carbohydrate binding module (family 6) BG11_1897 PF00457 Glycosyl hydrolases family 11 BG11_1897 PF01522 Polysaccharide deacetylase BG11_1898 PF00209 Sodium:neurotransmitter symporter family BG11_1899 PF01943 Polysaccharide biosynthesis protein BG11_1899 PF14667 Polysaccharide biosynthesis C-terminal domain BG11_19 PF00155 Aminotransferase class I and II BG11_19 PF00392 Bacterial regulatory proteins, gntR family BG11_1902 PF00291 Pyridoxal-phosphate dependent enzyme BG11_1903 PF07690 Major Facilitator Superfamily BG11_1904 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_1905 PF16360 GTP-binding GTPase Middle Region BG11_1905 PF01926 50S ribosome-binding GTPase BG11_1905 PF13167 GTP-binding GTPase N-terminal BG11_1907 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG11_1907 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG11_1908 PF07690 Major Facilitator Superfamily BG11_1909 PF03976 Polyphosphate kinase 2 (PPK2) BG11_1910 PF02554 Carbon starvation protein CstA BG11_1913 PF07690 Major Facilitator Superfamily BG11_1915 PF13205 Bacterial Ig-like domain BG11_1915 PF00395 S-layer homology domain BG11_1915 PF02368 Bacterial Ig-like domain (group 2) BG11_1916 PF00293 NUDIX domain BG11_1917 PF14158 YndJ-like protein BG11_1918 PF13761 Domain of unknown function (DUF4166) BG11_1920 PF13840 ACT domain BG11_1920 PF00696 Amino acid kinase family BG11_1924 PF03590 Aspartate-ammonia ligase BG11_1926 PF00271 Helicase conserved C-terminal domain BG11_1926 PF04434 SWIM zinc finger BG11_1926 PF00176 SNF2 family N-terminal domain BG11_1927 PF08664 YcbB domain BG11_1927 PF00072 Response regulator receiver domain BG11_1928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1929 PF03949 Malic enzyme, NAD binding domain BG11_1929 PF00390 Malic enzyme, N-terminal domain BG11_1930 PF10415 Fumarase C C-terminus BG11_1930 PF00206 Lyase BG11_1931 PF00375 Sodium:dicarboxylate symporter family BG11_1932 PF00696 Amino acid kinase family BG11_1933 PF13091 PLD-like domain BG11_1936 PF00005 ABC transporter BG11_1937 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_1937 PF07730 Histidine kinase BG11_1937 PF13185 GAF domain BG11_1937 PF13492 GAF domain BG11_1938 PF00072 Response regulator receiver domain BG11_1938 PF00196 Bacterial regulatory proteins, luxR family BG11_1943 PF04286 Protein of unknown function (DUF445) BG11_1944 PF00291 Pyridoxal-phosphate dependent enzyme BG11_1948 PF00578 AhpC/TSA family BG11_1949 PF02683 Cytochrome C biogenesis protein transmembrane region BG11_1953 PF03575 Peptidase family S51 BG11_1954 PF01554 MatE BG11_1958 PF00206 Lyase BG11_1958 PF10415 Fumarase C C-terminus BG11_196 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_1960 PF13411 MerR HTH family regulatory protein BG11_1961 PF03553 Na+/H+ antiporter family BG11_1962 PF00535 Glycosyl transferase family 2 BG11_1964 PF03773 Predicted permease BG11_1965 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG11_1965 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG11_1966 PF00892 EamA-like transporter family BG11_1967 PF07729 FCD domain BG11_1967 PF00392 Bacterial regulatory proteins, gntR family BG11_1969 PF16916 Dimerisation domain of Zinc Transporter BG11_1969 PF01545 Cation efflux family BG11_1973 PF00733 Asparagine synthase BG11_1973 PF13537 Glutamine amidotransferase domain BG11_1975 PF01047 MarR family BG11_1979 PF00300 Histidine phosphatase superfamily (branch 1) BG11_198 PF01568 Molydopterin dinucleotide binding domain BG11_198 PF00384 Molybdopterin oxidoreductase BG11_198 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BG11_198 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BG11_198 PF00037 4Fe-4S binding domain BG11_1981 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_1981 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_1984 PF10787 Uncharacterised protein from bacillus cereus group BG11_1986 PF00753 Metallo-beta-lactamase superfamily BG11_1986 PF12706 Beta-lactamase superfamily domain BG11_1987 PF00528 Binding-protein-dependent transport system inner membrane component BG11_1989 PF00005 ABC transporter BG11_1989 PF08402 TOBE domain BG11_199 PF07849 Protein of unknown function (DUF1641) BG11_1994 PF08141 Small acid-soluble spore protein H family BG11_1995 PF03992 Antibiotic biosynthesis monooxygenase BG11_2 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG11_20 PF03788 LrgA family BG11_200 PF10057 Uncharacterized conserved protein (DUF2294) BG11_2002 PF01411 tRNA synthetases class II (A) BG11_2002 PF02272 DHHA1 domain BG11_2002 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG11_2003 PF00460 Flagella basal body rod protein BG11_2003 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG11_2004 PF00448 SRP54-type protein, GTPase domain BG11_2005 PF00771 FHIPEP family BG11_2006 PF01312 FlhB HrpN YscU SpaS Family BG11_2008 PF01313 Bacterial export proteins, family 3 BG11_2009 PF00813 FliP family BG11_201 PF02634 FdhD/NarQ family BG11_2011 PF04509 CheC-like family BG11_2011 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG11_2012 PF02154 Flagellar motor switch protein FliM BG11_2012 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG11_2014 PF01464 Transglycosylase SLT domain BG11_2015 PF00669 Bacterial flagellin N-terminal helical region BG11_2015 PF00700 Bacterial flagellin C-terminal helical region BG11_2016 PF00700 Bacterial flagellin C-terminal helical region BG11_2016 PF00669 Bacterial flagellin N-terminal helical region BG11_2017 PF12181 DNA binding domain of the motility gene repressor (MogR) BG11_2018 PF00072 Response regulator receiver domain BG11_2018 PF01584 CheW-like domain BG11_202 PF04055 Radical SAM superfamily BG11_202 PF06463 Molybdenum Cofactor Synthesis C BG11_2021 PF07559 Flagellar basal body protein FlaE BG11_2021 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG11_2021 PF00460 Flagella basal body rod protein BG11_2025 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG11_2025 PF18269 T3SS EscN ATPase C-terminal domain BG11_2025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG11_2027 PF14842 FliG N-terminal domain BG11_2027 PF14841 FliG middle domain BG11_2027 PF01706 FliG C-terminal domain BG11_2028 PF01514 Secretory protein of YscJ/FliF family BG11_2028 PF08345 Flagellar M-ring protein C-terminal BG11_2029 PF02049 Flagellar hook-basal body complex protein FliE BG11_203 PF01226 Formate/nitrite transporter BG11_2030 PF00460 Flagella basal body rod protein BG11_2030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG11_2031 PF00460 Flagella basal body rod protein BG11_2034 PF07195 Flagellar hook-associated protein 2 C-terminus BG11_2034 PF02465 Flagellar hook-associated protein 2 N-terminus BG11_2034 PF07196 Flagellin hook IN motif BG11_2035 PF00700 Bacterial flagellin C-terminal helical region BG11_2035 PF00669 Bacterial flagellin N-terminal helical region BG11_2036 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG11_2036 PF00460 Flagella basal body rod protein BG11_204 PF00899 ThiF family BG11_2040 PF01739 CheR methyltransferase, SAM binding domain BG11_2040 PF03705 CheR methyltransferase, all-alpha domain BG11_2043 PF04509 CheC-like family BG11_2043 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG11_2044 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2044 PF01584 CheW-like domain BG11_2044 PF07194 P2 response regulator binding domain BG11_2044 PF01627 Hpt domain BG11_2044 PF02895 Signal transducing histidine kinase, homodimeric domain BG11_2045 PF00072 Response regulator receiver domain BG11_2046 PF13677 Membrane MotB of proton-channel complex MotA/MotB BG11_2046 PF00691 OmpA family BG11_2047 PF01618 MotA/TolQ/ExbB proton channel family BG11_2049 PF17209 Hfq protein BG11_205 PF03453 MoeA N-terminal region (domain I and II) BG11_205 PF00994 Probable molybdopterin binding domain BG11_205 PF03454 MoeA C-terminal region (domain IV) BG11_2058 PF00881 Nitroreductase family BG11_206 PF02391 MoaE protein BG11_2060 PF02698 DUF218 domain BG11_2061 PF04239 Protein of unknown function (DUF421) BG11_2063 PF06445 GyrI-like small molecule binding domain BG11_2063 PF13411 MerR HTH family regulatory protein BG11_2064 PF17770 Ribonuclease J C-terminal domain BG11_2064 PF00753 Metallo-beta-lactamase superfamily BG11_2064 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG11_2065 PF00999 Sodium/hydrogen exchanger family BG11_2067 PF00202 Aminotransferase class-III BG11_2068 PF00474 Sodium:solute symporter family BG11_2069 PF04341 Protein of unknown function, DUF485 BG11_2072 PF01810 LysE type translocator BG11_2073 PF08892 YqcI/YcgG family BG11_2074 PF00313 'Cold-shock' DNA-binding domain BG11_2079 PF01263 Aldose 1-epimerase BG11_208 PF10609 NUBPL iron-transfer P-loop NTPase BG11_2080 PF13456 Reverse transcriptase-like BG11_2084 PF13673 Acetyltransferase (GNAT) domain BG11_2084 PF18014 Acetyltransferase (GNAT) domain BG11_2087 PF13439 Glycosyltransferase Family 4 BG11_2087 PF00534 Glycosyl transferases group 1 BG11_2088 PF00535 Glycosyl transferase family 2 BG11_2091 PF02397 Bacterial sugar transferase BG11_2096 PF01367 5'-3' exonuclease, C-terminal SAM fold BG11_2096 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BG11_2097 PF00690 Cation transporter/ATPase, N-terminus BG11_2097 PF00689 Cation transporting ATPase, C-terminus BG11_2099 PF03738 Glutathionylspermidine synthase preATP-grasp BG11_21 PF04172 LrgB-like family BG11_2102 PF00581 Rhodanese-like domain BG11_2103 PF10752 Protein of unknown function (DUF2533) BG11_2104 PF00583 Acetyltransferase (GNAT) family BG11_2106 PF00350 Dynamin family BG11_2108 PF04235 Protein of unknown function (DUF418) BG11_2109 PF00860 Permease family BG11_211 PF00892 EamA-like transporter family BG11_2110 PF00156 Phosphoribosyl transferase domain BG11_2111 PF00557 Metallopeptidase family M24 BG11_2112 PF01636 Phosphotransferase enzyme family BG11_2114 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BG11_2115 PF13307 Helicase C-terminal domain BG11_2117 PF01170 Putative RNA methylase family UPF0020 BG11_2117 PF02926 THUMP domain BG11_2118 PF05103 DivIVA protein BG11_2119 PF06908 YspA SLOG family BG11_212 PF02681 Divergent PAP2 family BG11_2126 PF10720 Protein of unknown function (DUF2515) BG11_2127 PF03838 Recombination protein U BG11_2128 PF00912 Transglycosylase BG11_2128 PF00905 Penicillin binding protein transpeptidase domain BG11_213 PF13243 Squalene-hopene cyclase C-terminal domain BG11_213 PF13249 Squalene-hopene cyclase N-terminal domain BG11_2130 PF00730 HhH-GPD superfamily base excision DNA repair protein BG11_2130 PF00633 Helix-hairpin-helix motif BG11_2130 PF10576 Iron-sulfur binding domain of endonuclease III BG11_2131 PF07261 Replication initiation and membrane attachment BG11_2132 PF00155 Aminotransferase class I and II BG11_2134 PF14084 Protein of unknown function (DUF4264) BG11_2135 PF00929 Exonuclease BG11_2135 PF04851 Type III restriction enzyme, res subunit BG11_2135 PF13307 Helicase C-terminal domain BG11_2136 PF02261 Aspartate decarboxylase BG11_2137 PF02569 Pantoate-beta-alanine ligase BG11_2138 PF02548 Ketopantoate hydroxymethyltransferase BG11_2140 PF03099 Biotin/lipoate A/B protein ligase family BG11_2140 PF02237 Biotin protein ligase C terminal domain BG11_2140 PF08279 HTH domain BG11_2141 PF12627 Probable RNA and SrmB- binding site of polymerase A BG11_2141 PF01743 Poly A polymerase head domain BG11_2141 PF13735 tRNA nucleotidyltransferase domain 2 putative BG11_2142 PF00534 Glycosyl transferases group 1 BG11_2142 PF13439 Glycosyltransferase Family 4 BG11_2143 PF02585 GlcNAc-PI de-N-acetylase BG11_2144 PF02142 MGS-like domain BG11_2145 PF01113 Dihydrodipicolinate reductase, N-terminus BG11_2145 PF05173 Dihydrodipicolinate reductase, C-terminus BG11_2146 PF03819 MazG nucleotide pyrophosphohydrolase domain BG11_2147 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_2147 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_2149 PF04298 Putative neutral zinc metallopeptidase BG11_215 PF00171 Aldehyde dehydrogenase family BG11_2150 PF09577 Sporulation protein YpjB (SpoYpjB) BG11_2152 PF07187 Protein of unknown function (DUF1405) BG11_2153 PF00032 Cytochrome b(C-terminal)/b6/petD BG11_2153 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG11_2154 PF00033 Cytochrome b/b6/petB BG11_2155 PF00355 Rieske [2Fe-2S] domain BG11_2156 PF10673 Protein of unknown function (DUF2487) BG11_2157 PF08864 UPF0302 domain BG11_2157 PF08858 IDEAL domain BG11_2159 PF00155 Aminotransferase class I and II BG11_2160 PF01761 3-dehydroquinate synthase BG11_2161 PF01264 Chorismate synthase BG11_2162 PF00334 Nucleoside diphosphate kinase BG11_2163 PF00348 Polyprenyl synthetase BG11_2164 PF01209 ubiE/COQ5 methyltransferase family BG11_2165 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BG11_2166 PF01227 GTP cyclohydrolase I BG11_2167 PF00216 Bacterial DNA-binding protein BG11_2168 PF09547 Stage IV sporulation protein A (spore_IV_A) BG11_217 PF00474 Sodium:solute symporter family BG11_2170 PF10966 Protein of unknown function (DUF2768) BG11_2172 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BG11_2172 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BG11_2173 PF01926 50S ribosome-binding GTPase BG11_2173 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BG11_2175 PF14045 YIEGIA protein BG11_2177 PF14140 YpzI-like protein BG11_2178 PF01070 FMN-dependent dehydrogenase BG11_2179 PF00575 S1 RNA binding domain BG11_218 PF01156 Inosine-uridine preferring nucleoside hydrolase BG11_2180 PF02224 Cytidylate kinase BG11_2182 PF00710 Asparaginase, N-terminal BG11_2182 PF17763 Glutaminase/Asparaginase C-terminal domain BG11_2187 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BG11_2187 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BG11_2188 PF05389 Negative regulator of genetic competence (MecA) BG11_2189 PF13411 MerR HTH family regulatory protein BG11_2189 PF02607 B12 binding domain BG11_2189 PF02310 B12 binding domain BG11_2190 PF00149 Calcineurin-like phosphoesterase BG11_2192 PF02517 CPBP intramembrane metalloprotease BG11_2193 PF00271 Helicase conserved C-terminal domain BG11_2193 PF00270 DEAD/DEAH box helicase BG11_2196 PF12822 ECF transporter, substrate-specific component BG11_2198 PF01551 Peptidase family M23 BG11_2199 PF01923 Cobalamin adenosyltransferase BG11_22 PF10787 Uncharacterised protein from bacillus cereus group BG11_220 PF00206 Lyase BG11_220 PF14698 Argininosuccinate lyase C-terminal BG11_2200 PF18698 Histidine kinase sensor domain BG11_2200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2200 PF00512 His Kinase A (phospho-acceptor) domain BG11_2200 PF00672 HAMP domain BG11_2200 PF00989 PAS fold BG11_2201 PF00486 Transcriptional regulatory protein, C terminal BG11_2201 PF00072 Response regulator receiver domain BG11_2202 PF01578 Cytochrome C assembly protein BG11_2203 PF05140 ResB-like family BG11_2204 PF00578 AhpC/TSA family BG11_2205 PF00849 RNA pseudouridylate synthase BG11_2205 PF01479 S4 domain BG11_2206 PF07670 Nucleoside recognition BG11_2207 PF07670 Nucleoside recognition BG11_2208 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_2208 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_2209 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG11_2209 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG11_2212 PF03706 Lysylphosphatidylglycerol synthase TM region BG11_2212 PF09924 Uncharacterised conserved protein (DUF2156) BG11_2215 PF01048 Phosphorylase superfamily BG11_2216 PF16736 Single Cache-like BG11_2216 PF00989 PAS fold BG11_2216 PF00512 His Kinase A (phospho-acceptor) domain BG11_2216 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2217 PF00589 Phage integrase family BG11_2219 PF01904 Protein of unknown function DUF72 BG11_222 PF00106 short chain dehydrogenase BG11_2220 PF00989 PAS fold BG11_2220 PF00512 His Kinase A (phospho-acceptor) domain BG11_2220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2223 PF00905 Penicillin binding protein transpeptidase domain BG11_2223 PF00912 Transglycosylase BG11_2224 PF01865 Protein of unknown function DUF47 BG11_2225 PF01384 Phosphate transporter family BG11_2226 PF01925 Sulfite exporter TauE/SafE BG11_2229 PF00175 Oxidoreductase NAD-binding domain BG11_2229 PF00042 Globin BG11_2229 PF00970 Oxidoreductase FAD-binding domain BG11_2234 PF08241 Methyltransferase domain BG11_2236 PF05525 Branched-chain amino acid transport protein BG11_2238 PF00072 Response regulator receiver domain BG11_2238 PF00196 Bacterial regulatory proteins, luxR family BG11_2239 PF00672 HAMP domain BG11_2239 PF07730 Histidine kinase BG11_2239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_224 PF00132 Bacterial transferase hexapeptide (six repeats) BG11_2240 PF09922 Cell wall-active antibiotics response 4TMS YvqF BG11_2243 PF03553 Na+/H+ antiporter family BG11_2245 PF00375 Sodium:dicarboxylate symporter family BG11_2247 PF00209 Sodium:neurotransmitter symporter family BG11_2249 PF01903 CbiX BG11_2250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG11_2252 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BG11_2252 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BG11_2254 PF14306 PUA-like domain BG11_2254 PF01747 ATP-sulfurylase BG11_2255 PF01507 Phosphoadenosine phosphosulfate reductase family BG11_2257 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BG11_2257 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BG11_2259 PF00884 Sulfatase BG11_226 PF00293 NUDIX domain BG11_2260 PF01066 CDP-alcohol phosphatidyltransferase BG11_2261 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG11_2261 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG11_2263 PF02811 PHP domain BG11_2264 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BG11_2265 PF01502 Phosphoribosyl-AMP cyclohydrolase BG11_2266 PF00977 Histidine biosynthesis protein BG11_2267 PF00977 Histidine biosynthesis protein BG11_2268 PF00117 Glutamine amidotransferase class-I BG11_2269 PF00475 Imidazoleglycerol-phosphate dehydratase BG11_2270 PF00815 Histidinol dehydrogenase BG11_2271 PF01634 ATP phosphoribosyltransferase BG11_2272 PF13393 Histidyl-tRNA synthetase BG11_2273 PF00694 Aconitase C-terminal domain BG11_2274 PF00330 Aconitase family (aconitate hydratase) BG11_2275 PF00180 Isocitrate/isopropylmalate dehydrogenase BG11_2276 PF08502 LeuA allosteric (dimerisation) domain BG11_2276 PF00682 HMGL-like BG11_2277 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BG11_2277 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BG11_2278 PF10369 Small subunit of acetolactate synthase BG11_2278 PF01842 ACT domain BG11_2279 PF00205 Thiamine pyrophosphate enzyme, central domain BG11_2279 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG11_2279 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG11_228 PF00258 Flavodoxin BG11_2280 PF01063 Amino-transferase class IV BG11_2282 PF03698 Uncharacterised protein family (UPF0180) BG11_2284 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG11_2286 PF02386 Cation transport protein BG11_2287 PF00375 Sodium:dicarboxylate symporter family BG11_2289 PF01047 MarR family BG11_2292 PF02673 Bacitracin resistance protein BacA BG11_2293 PF01554 MatE BG11_2297 PF01636 Phosphotransferase enzyme family BG11_230 PF00313 'Cold-shock' DNA-binding domain BG11_2300 PF00258 Flavodoxin BG11_2302 PF07687 Peptidase dimerisation domain BG11_2302 PF01546 Peptidase family M20/M25/M40 BG11_2304 PF00501 AMP-binding enzyme BG11_2304 PF13193 AMP-binding enzyme C-terminal domain BG11_2305 PF03062 MBOAT, membrane-bound O-acyltransferase family BG11_2306 PF00550 Phosphopantetheine attachment site BG11_2307 PF04914 DltD protein BG11_2308 PF03060 Nitronate monooxygenase BG11_2309 PF17676 LD-carboxypeptidase C-terminal domain BG11_2309 PF02016 LD-carboxypeptidase N-terminal domain BG11_2311 PF00857 Isochorismatase family BG11_2313 PF01037 Lrp/AsnC ligand binding domain BG11_2315 PF02517 CPBP intramembrane metalloprotease BG11_2317 PF00005 ABC transporter BG11_2319 PF00005 ABC transporter BG11_2320 PF00392 Bacterial regulatory proteins, gntR family BG11_2321 PF00268 Ribonucleotide reductase, small chain BG11_2322 PF00317 Ribonucleotide reductase, all-alpha domain BG11_2322 PF02867 Ribonucleotide reductase, barrel domain BG11_2322 PF08343 Ribonucleotide reductase N-terminal BG11_2324 PF08343 Ribonucleotide reductase N-terminal BG11_2324 PF00317 Ribonucleotide reductase, all-alpha domain BG11_2324 PF02867 Ribonucleotide reductase, barrel domain BG11_2325 PF07972 NrdI Flavodoxin like BG11_2331 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BG11_2332 PF14489 QueF-like protein BG11_2333 PF04055 Radical SAM superfamily BG11_2334 PF01242 6-pyruvoyl tetrahydropterin synthase BG11_2335 PF06508 Queuosine biosynthesis protein QueC BG11_2336 PF00989 PAS fold BG11_2336 PF00512 His Kinase A (phospho-acceptor) domain BG11_2336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2336 PF13426 PAS domain BG11_2336 PF13188 PAS domain BG11_2338 PF12867 DinB superfamily BG11_234 PF13037 Domain of unknown function (DUF3898) BG11_234 PF13039 Protein of unknown function (DUF3900) BG11_2340 PF01047 MarR family BG11_2341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2341 PF00512 His Kinase A (phospho-acceptor) domain BG11_2341 PF02743 Cache domain BG11_2342 PF09388 Spo0E like sporulation regulatory protein BG11_2343 PF04748 Divergent polysaccharide deacetylase BG11_2345 PF00596 Class II Aldolase and Adducin N-terminal domain BG11_2346 PF01520 N-acetylmuramoyl-L-alanine amidase BG11_2346 PF00395 S-layer homology domain BG11_2348 PF08220 DeoR-like helix-turn-helix domain BG11_2348 PF00455 DeoR C terminal sensor domain BG11_2350 PF00266 Aminotransferase class-V BG11_2351 PF13419 Haloacid dehalogenase-like hydrolase BG11_2352 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2353 PF08402 TOBE domain BG11_2353 PF00005 ABC transporter BG11_2357 PF02386 Cation transport protein BG11_2359 PF00561 alpha/beta hydrolase fold BG11_236 PF04294 VanW like protein BG11_2364 PF01575 MaoC like domain BG11_2365 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_2366 PF02386 Cation transport protein BG11_2367 PF03741 Integral membrane protein TerC family BG11_2368 PF01226 Formate/nitrite transporter BG11_237 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_2370 PF01478 Type IV leader peptidase family BG11_2370 PF06750 Bacterial Peptidase A24 N-terminal domain BG11_2371 PF02589 LUD domain BG11_2372 PF13183 4Fe-4S dicluster domain BG11_2372 PF11870 Domain of unknown function (DUF3390) BG11_2372 PF02589 LUD domain BG11_2373 PF02754 Cysteine-rich domain BG11_2374 PF00392 Bacterial regulatory proteins, gntR family BG11_2374 PF07729 FCD domain BG11_2375 PF18698 Histidine kinase sensor domain BG11_2375 PF00512 His Kinase A (phospho-acceptor) domain BG11_2375 PF00672 HAMP domain BG11_2375 PF00989 PAS fold BG11_2375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2376 PF00072 Response regulator receiver domain BG11_2376 PF00486 Transcriptional regulatory protein, C terminal BG11_2378 PF05651 Putative sugar diacid recognition BG11_2378 PF17853 GGDEF-like domain BG11_2378 PF13556 PucR C-terminal helix-turn-helix domain BG11_2379 PF01565 FAD binding domain BG11_2379 PF02913 FAD linked oxidases, C-terminal domain BG11_2380 PF02754 Cysteine-rich domain BG11_2380 PF13183 4Fe-4S dicluster domain BG11_2381 PF00188 Cysteine-rich secretory protein family BG11_2383 PF01479 S4 domain BG11_2383 PF00849 RNA pseudouridylate synthase BG11_2385 PF03176 MMPL family BG11_2387 PF13416 Bacterial extracellular solute-binding protein BG11_2388 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2389 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2390 PF00005 ABC transporter BG11_2390 PF08402 TOBE domain BG11_2391 PF00171 Aldehyde dehydrogenase family BG11_2392 PF05547 Immune inhibitor A peptidase M6 BG11_2393 PF01381 Helix-turn-helix BG11_2393 PF08671 Anti-repressor SinI BG11_2394 PF12389 Camelysin metallo-endopeptidase BG11_2396 PF12389 Camelysin metallo-endopeptidase BG11_2398 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_2398 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_24 PF00563 EAL domain BG11_24 PF00990 Diguanylate cyclase, GGDEF domain BG11_24 PF03707 Bacterial signalling protein N terminal repeat BG11_240 PF02308 MgtC family BG11_2400 PF13649 Methyltransferase domain BG11_2403 PF02899 Phage integrase, N-terminal SAM-like domain BG11_2403 PF00589 Phage integrase family BG11_2407 PF04860 Phage portal protein BG11_241 PF18496 Collagenase G catalytic helper subdomain BG11_241 PF01752 Collagenase BG11_241 PF08453 Peptidase family M9 N-terminal BG11_2411 PF13392 HNH endonuclease BG11_242 PF00378 Enoyl-CoA hydratase/isomerase BG11_243 PF00535 Glycosyl transferase family 2 BG11_2434 PF01381 Helix-turn-helix BG11_2435 PF02779 Transketolase, pyrimidine binding domain BG11_2435 PF00676 Dehydrogenase E1 component BG11_2435 PF16870 2-oxoglutarate dehydrogenase C-terminal BG11_2436 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG11_2436 PF00364 Biotin-requiring enzyme BG11_2436 PF02817 e3 binding domain BG11_244 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BG11_2442 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_2442 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG11_2448 PF10042 Uncharacterized conserved protein (DUF2278) BG11_2449 PF02652 L-lactate permease BG11_245 PF00132 Bacterial transferase hexapeptide (six repeats) BG11_2451 PF00290 Tryptophan synthase alpha chain BG11_2452 PF00291 Pyridoxal-phosphate dependent enzyme BG11_2453 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BG11_2454 PF00218 Indole-3-glycerol phosphate synthase BG11_2455 PF00591 Glycosyl transferase family, a/b domain BG11_2455 PF02885 Glycosyl transferase family, helical bundle domain BG11_2456 PF00591 Glycosyl transferase family, a/b domain BG11_2456 PF02885 Glycosyl transferase family, helical bundle domain BG11_2456 PF00117 Glutamine amidotransferase class-I BG11_2458 PF00474 Sodium:solute symporter family BG11_2459 PF02368 Bacterial Ig-like domain (group 2) BG11_2462 PF00756 Putative esterase BG11_2464 PF13673 Acetyltransferase (GNAT) domain BG11_2465 PF13361 UvrD-like helicase C-terminal domain BG11_2465 PF00580 UvrD/REP helicase N-terminal domain BG11_2468 PF07098 Protein of unknown function (DUF1360) BG11_2472 PF04321 RmlD substrate binding domain BG11_2473 PF16363 GDP-mannose 4,6 dehydratase BG11_2474 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BG11_2475 PF00483 Nucleotidyl transferase BG11_2479 PF00535 Glycosyl transferase family 2 BG11_2479 PF13181 Tetratricopeptide repeat BG11_2481 PF05711 Macrocin-O-methyltransferase (TylF) BG11_2482 PF08241 Methyltransferase domain BG11_2483 PF00535 Glycosyl transferase family 2 BG11_2484 PF01098 Cell cycle protein BG11_2485 PF00149 Calcineurin-like phosphoesterase BG11_2487 PF00849 RNA pseudouridylate synthase BG11_2488 PF01513 ATP-NAD kinase BG11_2489 PF04607 Region found in RelA / SpoT proteins BG11_2491 PF01928 CYTH domain BG11_2492 PF01152 Bacterial-like globin BG11_2495 PF01432 Peptidase family M3 BG11_2495 PF08439 Oligopeptidase F BG11_2497 PF13091 PLD-like domain BG11_2497 PF13396 Phospholipase_D-nuclease N-terminal BG11_2498 PF05389 Negative regulator of genetic competence (MecA) BG11_2499 PF03741 Integral membrane protein TerC family BG11_25 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_2500 PF03960 ArsC family BG11_2502 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_2503 PF01554 MatE BG11_2504 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_2504 PF00005 ABC transporter BG11_2505 PF00005 ABC transporter BG11_2505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_2506 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2506 PF12911 N-terminal TM domain of oligopeptide transport permease C BG11_2507 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2508 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_251 PF01758 Sodium Bile acid symporter family BG11_2510 PF00579 tRNA synthetases class I (W and Y) BG11_2511 PF12227 Protein of unknown function (DUF3603) BG11_2512 PF10026 Predicted Zn-dependent protease (DUF2268) BG11_2513 PF00109 Beta-ketoacyl synthase, N-terminal domain BG11_2513 PF02801 Beta-ketoacyl synthase, C-terminal domain BG11_2514 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG11_2514 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG11_2515 PF10815 ComZ BG11_2519 PF10431 C-terminal, D2-small domain, of ClpB protein BG11_2519 PF02861 Clp amino terminal domain, pathogenicity island component BG11_2519 PF07724 AAA domain (Cdc48 subfamily) BG11_2519 PF00004 ATPase family associated with various cellular activities (AAA) BG11_2519 PF17871 AAA lid domain BG11_2520 PF14168 YjzC-like protein BG11_2523 PF12758 Protein of unknown function (DUF3813) BG11_2524 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_2524 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_2526 PF00639 PPIC-type PPIASE domain BG11_2528 PF17783 CvfB-like winged helix domain BG11_2528 PF13509 S1 domain BG11_2529 PF04461 Protein of unknown function (DUF520) BG11_253 PF04229 GrpB protein BG11_2531 PF00128 Alpha amylase, catalytic domain BG11_2532 PF00909 Ammonium Transporter Family BG11_2533 PF06628 Catalase-related immune-responsive BG11_2533 PF00199 Catalase BG11_2535 PF00733 Asparagine synthase BG11_2535 PF13537 Glutamine amidotransferase domain BG11_2537 PF07457 Protein of unknown function (DUF1516) BG11_2538 PF00202 Aminotransferase class-III BG11_254 PF04299 Putative FMN-binding domain BG11_2540 PF01557 Fumarylacetoacetate (FAA) hydrolase family BG11_2541 PF09388 Spo0E like sporulation regulatory protein BG11_2542 PF10676 Spore germination protein gerPA/gerPF BG11_2543 PF10803 Spore germination GerPB BG11_2544 PF10737 Spore germination protein GerPC BG11_2546 PF10970 Spore germination protein GerPE BG11_2547 PF10676 Spore germination protein gerPA/gerPF BG11_2549 PF12705 PD-(D/E)XK nuclease superfamily BG11_2549 PF00580 UvrD/REP helicase N-terminal domain BG11_2549 PF13361 UvrD-like helicase C-terminal domain BG11_2550 PF12705 PD-(D/E)XK nuclease superfamily BG11_2550 PF13361 UvrD-like helicase C-terminal domain BG11_2551 PF10502 Signal peptidase, peptidase S26 BG11_2552 PF09335 SNARE associated Golgi protein BG11_2554 PF06338 ComK protein BG11_2558 PF00313 'Cold-shock' DNA-binding domain BG11_256 PF18801 response regulator aspartate phosphatase H, N terminal BG11_2560 PF00463 Isocitrate lyase family BG11_2561 PF01274 Malate synthase BG11_2562 PF00395 S-layer homology domain BG11_2564 PF00150 Cellulase (glycosyl hydrolase family 5) BG11_2564 PF00395 S-layer homology domain BG11_2564 PF03424 Carbohydrate binding domain (family 17/28) BG11_2565 PF00892 EamA-like transporter family BG11_2566 PF01435 Peptidase family M48 BG11_2566 PF16491 CAAX prenyl protease N-terminal, five membrane helices BG11_257 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BG11_2571 PF00486 Transcriptional regulatory protein, C terminal BG11_2571 PF00072 Response regulator receiver domain BG11_2572 PF00512 His Kinase A (phospho-acceptor) domain BG11_2572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2575 PF12833 Helix-turn-helix domain BG11_2575 PF06445 GyrI-like small molecule binding domain BG11_2576 PF04542 Sigma-70 region 2 BG11_2576 PF08281 Sigma-70, region 4 BG11_2578 PF01966 HD domain BG11_258 PF00107 Zinc-binding dehydrogenase BG11_258 PF08240 Alcohol dehydrogenase GroES-like domain BG11_2580 PF00149 Calcineurin-like phosphoesterase BG11_2581 PF07968 Leukocidin/Hemolysin toxin family BG11_2588 PF05593 RHS Repeat BG11_259 PF01022 Bacterial regulatory protein, arsR family BG11_2591 PF05593 RHS Repeat BG11_2592 PF01520 N-acetylmuramoyl-L-alanine amidase BG11_2592 PF00395 S-layer homology domain BG11_2598 PF00664 ABC transporter transmembrane region BG11_2598 PF00005 ABC transporter BG11_2598 PF03412 Peptidase C39 family BG11_26 PF00561 alpha/beta hydrolase fold BG11_260 PF01494 FAD binding domain BG11_2600 PF13193 AMP-binding enzyme C-terminal domain BG11_2600 PF00501 AMP-binding enzyme BG11_2602 PF10437 Bacterial lipoate protein ligase C-terminus BG11_2602 PF03099 Biotin/lipoate A/B protein ligase family BG11_2603 PF12706 Beta-lactamase superfamily domain BG11_2604 PF14149 YhfH-like protein BG11_2605 PF00356 Bacterial regulatory proteins, lacI family BG11_2606 PF13280 WYL domain BG11_2606 PF08279 HTH domain BG11_2613 PF00440 Bacterial regulatory proteins, tetR family BG11_2613 PF17932 Tetracyclin repressor-like, C-terminal domain BG11_2621 PF01208 Uroporphyrinogen decarboxylase (URO-D) BG11_2622 PF00905 Penicillin binding protein transpeptidase domain BG11_2622 PF00912 Transglycosylase BG11_2623 PF03992 Antibiotic biosynthesis monooxygenase BG11_2624 PF03703 Bacterial PH domain BG11_2625 PF03703 Bacterial PH domain BG11_263 PF03009 Glycerophosphoryl diester phosphodiesterase family BG11_2633 PF03703 Bacterial PH domain BG11_2634 PF03703 Bacterial PH domain BG11_2636 PF17934 Tetracyclin repressor-like, C-terminal domain BG11_2636 PF00440 Bacterial regulatory proteins, tetR family BG11_2646 PF12787 EcsC protein family BG11_2647 PF05975 Bacterial ABC transporter protein EcsB BG11_2648 PF00005 ABC transporter BG11_2649 PF01230 HIT domain BG11_2650 PF12732 YtxH-like protein BG11_2651 PF01047 MarR family BG11_2655 PF13538 UvrD-like helicase C-terminal domain BG11_2657 PF07690 Major Facilitator Superfamily BG11_2658 PF07690 Major Facilitator Superfamily BG11_266 PF03466 LysR substrate binding domain BG11_266 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_2661 PF01098 Cell cycle protein BG11_2663 PF08281 Sigma-70, region 4 BG11_2663 PF04542 Sigma-70 region 2 BG11_2665 PF13276 HTH-like domain BG11_2665 PF13333 Integrase core domain BG11_2665 PF00665 Integrase core domain BG11_2667 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BG11_2667 PF01266 FAD dependent oxidoreductase BG11_2668 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG11_2668 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG11_2669 PF00230 Major intrinsic protein BG11_267 PF07690 Major Facilitator Superfamily BG11_2670 PF04309 Glycerol-3-phosphate responsive antiterminator BG11_2674 PF08386 TAP-like protein BG11_2674 PF00561 alpha/beta hydrolase fold BG11_2676 PF17874 MalT-like TPR region BG11_2676 PF18801 response regulator aspartate phosphatase H, N terminal BG11_2677 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_2678 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_2681 PF04740 LXG domain of WXG superfamily BG11_2681 PF14449 Pre-toxin TG BG11_2681 PF14431 YwqJ-like deaminase BG11_2684 PF01966 HD domain BG11_2684 PF01336 OB-fold nucleic acid binding domain BG11_2685 PF13514 AAA domain BG11_2686 PF00149 Calcineurin-like phosphoesterase BG11_2689 PF11121 Protein of unknown function (DUF2639) BG11_269 PF00144 Beta-lactamase BG11_2692 PF00107 Zinc-binding dehydrogenase BG11_2692 PF08240 Alcohol dehydrogenase GroES-like domain BG11_2695 PF01906 Putative heavy-metal-binding BG11_270 PF01432 Peptidase family M3 BG11_270 PF08439 Oligopeptidase F BG11_2700 PF00512 His Kinase A (phospho-acceptor) domain BG11_2700 PF01627 Hpt domain BG11_2700 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG11_2700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2700 PF00072 Response regulator receiver domain BG11_2701 PF01739 CheR methyltransferase, SAM binding domain BG11_2701 PF03705 CheR methyltransferase, all-alpha domain BG11_2702 PF07228 Stage II sporulation protein E (SpoIIE) BG11_2702 PF13426 PAS domain BG11_2704 PF04545 Sigma-70, region 4 BG11_2704 PF04539 Sigma-70 region 3 BG11_2704 PF04542 Sigma-70 region 2 BG11_2705 PF13581 Histidine kinase-like ATPase domain BG11_2706 PF01740 STAS domain BG11_2709 PF05532 CsbD-like BG11_271 PF00797 N-acetyltransferase BG11_2710 PF11181 Heat induced stress protein YflT BG11_2715 PF00395 S-layer homology domain BG11_2719 PF01966 HD domain BG11_2719 PF00672 HAMP domain BG11_272 PF00128 Alpha amylase, catalytic domain BG11_272 PF09154 Domain of unknown function (DUF1939) BG11_2721 PF02733 Dak1 domain BG11_2723 PF02733 Dak1 domain BG11_2729 PF01066 CDP-alcohol phosphatidyltransferase BG11_274 PF01713 Smr domain BG11_274 PF00488 MutS domain V BG11_2745 PF07690 Major Facilitator Superfamily BG11_2747 PF01925 Sulfite exporter TauE/SafE BG11_2749 PF00772 DnaB-like helicase N terminal domain BG11_2749 PF03796 DnaB-like helicase C terminal domain BG11_2754 PF18766 SWI2/SNF2 ATPase BG11_2754 PF12008 Type I restriction and modification enzyme - subunit R C terminal BG11_2754 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BG11_2756 PF02384 N-6 DNA Methylase BG11_2756 PF12161 HsdM N-terminal domain BG11_2759 PF00271 Helicase conserved C-terminal domain BG11_2759 PF08463 EcoEI R protein C-terminal BG11_2759 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BG11_2759 PF04851 Type III restriction enzyme, res subunit BG11_2760 PF00293 NUDIX domain BG11_2761 PF03401 Tripartite tricarboxylate transporter family receptor BG11_2762 PF12431 Transcriptional regulator BG11_2762 PF08279 HTH domain BG11_2762 PF00072 Response regulator receiver domain BG11_2763 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG11_2763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_2764 PF00083 Sugar (and other) transporter BG11_2767 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_2767 PF00005 ABC transporter BG11_2768 PF00005 ABC transporter BG11_2768 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_2769 PF12911 N-terminal TM domain of oligopeptide transport permease C BG11_2769 PF00528 Binding-protein-dependent transport system inner membrane component BG11_277 PF00107 Zinc-binding dehydrogenase BG11_277 PF08240 Alcohol dehydrogenase GroES-like domain BG11_2770 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2771 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_2775 PF18593 CdiI immunity protein BG11_2776 PF02423 Ornithine cyclodeaminase/mu-crystallin family BG11_2777 PF05544 Proline racemase BG11_2778 PF11121 Protein of unknown function (DUF2639) BG11_278 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_278 PF03466 LysR substrate binding domain BG11_2780 PF01520 N-acetylmuramoyl-L-alanine amidase BG11_2780 PF00395 S-layer homology domain BG11_2781 PF05343 M42 glutamyl aminopeptidase BG11_2785 PF00378 Enoyl-CoA hydratase/isomerase BG11_2788 PF03062 MBOAT, membrane-bound O-acyltransferase family BG11_2789 PF03062 MBOAT, membrane-bound O-acyltransferase family BG11_2791 PF00395 S-layer homology domain BG11_2792 PF00395 S-layer homology domain BG11_2792 PF13205 Bacterial Ig-like domain BG11_2792 PF02368 Bacterial Ig-like domain (group 2) BG11_2794 PF01943 Polysaccharide biosynthesis protein BG11_2794 PF14667 Polysaccharide biosynthesis C-terminal domain BG11_2795 PF07517 SecA DEAD-like domain BG11_2795 PF07516 SecA Wing and Scaffold domain BG11_2795 PF01043 SecA preprotein cross-linking domain BG11_2799 PF00916 Sulfate permease family BG11_2799 PF01740 STAS domain BG11_280 PF10901 Protein of unknown function (DUF2690) BG11_2801 PF00501 AMP-binding enzyme BG11_2801 PF13193 AMP-binding enzyme C-terminal domain BG11_2802 PF04055 Radical SAM superfamily BG11_2803 PF01471 Putative peptidoglycan binding domain BG11_2803 PF01510 N-acetylmuramoyl-L-alanine amidase BG11_2806 PF02245 Methylpurine-DNA glycosylase (MPG) BG11_2807 PF03306 Alpha-acetolactate decarboxylase BG11_2808 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG11_2808 PF00205 Thiamine pyrophosphate enzyme, central domain BG11_2808 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG11_2811 PF06133 Control of competence regulator ComK, YlbF/YmcA BG11_2812 PF04286 Protein of unknown function (DUF445) BG11_2814 PF14398 YheC/D like ATP-grasp BG11_2816 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_2817 PF00005 ABC transporter BG11_2818 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2819 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG11_2820 PF00005 ABC transporter BG11_2820 PF00664 ABC transporter transmembrane region BG11_2821 PF00664 ABC transporter transmembrane region BG11_2821 PF00005 ABC transporter BG11_2822 PF00171 Aldehyde dehydrogenase family BG11_2824 PF01177 Asp/Glu/Hydantoin racemase BG11_2825 PF13520 Amino acid permease BG11_2827 PF06628 Catalase-related immune-responsive BG11_2827 PF18011 C-terminal domain found in long catalases BG11_2827 PF00199 Catalase BG11_2828 PF01965 DJ-1/PfpI family BG11_2830 PF07690 Major Facilitator Superfamily BG11_2831 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_2831 PF12793 Sugar transport-related sRNA regulator N-term BG11_2833 PF02525 Flavodoxin-like fold BG11_2835 PF01638 HxlR-like helix-turn-helix BG11_2836 PF07690 Major Facilitator Superfamily BG11_2837 PF00440 Bacterial regulatory proteins, tetR family BG11_2837 PF17934 Tetracyclin repressor-like, C-terminal domain BG11_2838 PF00893 Small Multidrug Resistance protein BG11_2839 PF00893 Small Multidrug Resistance protein BG11_284 PF13170 Protein of unknown function (DUF4003) BG11_2841 PF01037 Lrp/AsnC ligand binding domain BG11_2842 PF00892 EamA-like transporter family BG11_2845 PF07681 DoxX BG11_2847 PF02378 Phosphotransferase system, EIIC BG11_2847 PF00367 phosphotransferase system, EIIB BG11_2848 PF01380 SIS domain BG11_2849 PF01380 SIS domain BG11_2849 PF01418 Helix-turn-helix domain, rpiR family BG11_285 PF02567 Phenazine biosynthesis-like protein BG11_2851 PF00999 Sodium/hydrogen exchanger family BG11_2852 PF13520 Amino acid permease BG11_2859 PF09335 SNARE associated Golgi protein BG11_286 PF05675 Protein of unknown function (DUF817) BG11_2861 PF02735 Ku70/Ku80 beta-barrel domain BG11_2864 PF11007 Spore coat associated protein JA (CotJA) BG11_2865 PF12652 CotJB protein BG11_2866 PF05067 Manganese containing catalase BG11_2867 PF05525 Branched-chain amino acid transport protein BG11_287 PF01032 FecCD transport family BG11_2870 PF09529 Integral membrane protein (intg_mem_TP0381) BG11_2872 PF00005 ABC transporter BG11_2873 PF12704 MacB-like periplasmic core domain BG11_2873 PF02687 FtsX-like permease family BG11_2874 PF01476 LysM domain BG11_2874 PF06725 3D domain BG11_2877 PF02378 Phosphotransferase system, EIIC BG11_2878 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG11_2879 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG11_288 PF01032 FecCD transport family BG11_2880 PF05043 Mga helix-turn-helix domain BG11_2880 PF08279 HTH domain BG11_2880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG11_2880 PF00874 PRD domain BG11_2882 PF07690 Major Facilitator Superfamily BG11_2883 PF02690 Na+/Pi-cotransporter BG11_2884 PF00107 Zinc-binding dehydrogenase BG11_2884 PF08240 Alcohol dehydrogenase GroES-like domain BG11_2885 PF03816 Cell envelope-related transcriptional attenuator domain BG11_2887 PF01925 Sulfite exporter TauE/SafE BG11_2888 PF13686 DsrE/DsrF/DrsH-like family BG11_289 PF01497 Periplasmic binding protein BG11_2890 PF00581 Rhodanese-like domain BG11_2891 PF01206 Sulfurtransferase TusA BG11_2892 PF00753 Metallo-beta-lactamase superfamily BG11_2892 PF00581 Rhodanese-like domain BG11_2893 PF00581 Rhodanese-like domain BG11_2893 PF01206 Sulfurtransferase TusA BG11_2894 PF02583 Metal-sensitive transcriptional repressor BG11_2895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG11_2895 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_2897 PF00089 Trypsin BG11_2899 PF04293 SpoVR like protein BG11_2900 PF00881 Nitroreductase family BG11_2902 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_2904 PF03845 Spore germination protein BG11_2906 PF14148 YhdB-like protein BG11_2907 PF02600 Disulfide bond formation protein DsbB BG11_2908 PF00085 Thioredoxin BG11_2911 PF03734 L,D-transpeptidase catalytic domain BG11_2911 PF17969 L,D-transpeptidase C-terminal domain BG11_2913 PF00860 Permease family BG11_2916 PF01047 MarR family BG11_2917 PF07690 Major Facilitator Superfamily BG11_2918 PF02702 Osmosensitive K+ channel His kinase sensor domain BG11_2919 PF02669 K+-transporting ATPase, c chain BG11_292 PF03600 Citrate transporter BG11_2921 PF03814 Potassium-transporting ATPase A subunit BG11_2925 PF08543 Phosphomethylpyrimidine kinase BG11_2926 PF00899 ThiF family BG11_2927 PF05690 Thiazole biosynthesis protein ThiG BG11_2928 PF02597 ThiS family BG11_2929 PF01266 FAD dependent oxidoreductase BG11_293 PF08830 Protein of unknown function (DUF1806) BG11_2930 PF02581 Thiamine monophosphate synthase BG11_2931 PF09084 NMT1/THI5 like BG11_2932 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2933 PF00005 ABC transporter BG11_2934 PF03070 TENA/THI-4/PQQC family BG11_2935 PF00246 Zinc carboxypeptidase BG11_2935 PF08239 Bacterial SH3 domain BG11_2938 PF00571 CBS domain BG11_294 PF02585 GlcNAc-PI de-N-acetylase BG11_2963 PF00873 AcrB/AcrD/AcrF family BG11_2964 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2965 PF00528 Binding-protein-dependent transport system inner membrane component BG11_2966 PF12849 PBP superfamily domain BG11_2967 PF07670 Nucleoside recognition BG11_2967 PF02421 Ferrous iron transport protein B BG11_2967 PF17910 FeoB cytosolic helical domain BG11_2967 PF07664 Ferrous iron transport protein B C terminus BG11_2967 PF04023 FeoA domain BG11_2968 PF17910 FeoB cytosolic helical domain BG11_2968 PF02421 Ferrous iron transport protein B BG11_2968 PF07670 Nucleoside recognition BG11_2968 PF07664 Ferrous iron transport protein B C terminus BG11_2969 PF07670 Nucleoside recognition BG11_2969 PF02421 Ferrous iron transport protein B BG11_2969 PF07664 Ferrous iron transport protein B C terminus BG11_2969 PF17910 FeoB cytosolic helical domain BG11_2970 PF05504 Spore germination B3/ GerAC like, C-terminal BG11_2971 PF03845 Spore germination protein BG11_2972 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_2973 PF00474 Sodium:solute symporter family BG11_2974 PF11755 Protein of unknown function (DUF3311) BG11_2975 PF01546 Peptidase family M20/M25/M40 BG11_2975 PF07687 Peptidase dimerisation domain BG11_2976 PF13529 Peptidase_C39 like family BG11_2977 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BG11_2978 PF00115 Cytochrome C and Quinol oxidase polypeptide I BG11_2979 PF00510 Cytochrome c oxidase subunit III BG11_2981 PF02080 TrkA-C domain BG11_2981 PF00999 Sodium/hydrogen exchanger family BG11_2981 PF02254 TrkA-N domain BG11_2983 PF13673 Acetyltransferase (GNAT) domain BG11_2986 PF00860 Permease family BG11_2987 PF00324 Amino acid permease BG11_299 PF07690 Major Facilitator Superfamily BG11_2990 PF05525 Branched-chain amino acid transport protein BG11_2991 PF00854 POT family BG11_2992 PF04203 Sortase domain BG11_2994 PF01381 Helix-turn-helix BG11_2995 PF03990 G5-linked-Ubiquitin-like domain BG11_2995 PF07501 G5 domain BG11_2995 PF06725 3D domain BG11_2996 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_2996 PF02743 Cache domain BG11_2996 PF00672 HAMP domain BG11_2997 PF02673 Bacitracin resistance protein BacA BG11_3 PF01938 TRAM domain BG11_3 PF04055 Radical SAM superfamily BG11_3 PF00919 Uncharacterized protein family UPF0004 BG11_30 PF01546 Peptidase family M20/M25/M40 BG11_30 PF07687 Peptidase dimerisation domain BG11_300 PF00324 Amino acid permease BG11_3002 PF03372 Endonuclease/Exonuclease/phosphatase family BG11_3003 PF00882 Zinc dependent phospholipase C BG11_3005 PF00107 Zinc-binding dehydrogenase BG11_3005 PF08240 Alcohol dehydrogenase GroES-like domain BG11_3007 PF05547 Immune inhibitor A peptidase M6 BG11_3008 PF00923 Transaldolase/Fructose-6-phosphate aldolase BG11_3009 PF13407 Periplasmic binding protein domain BG11_301 PF00107 Zinc-binding dehydrogenase BG11_301 PF08240 Alcohol dehydrogenase GroES-like domain BG11_3010 PF02653 Branched-chain amino acid transport system / permease component BG11_3011 PF00005 ABC transporter BG11_3012 PF05025 RbsD / FucU transport protein family BG11_3013 PF00294 pfkB family carbohydrate kinase BG11_3014 PF00356 Bacterial regulatory proteins, lacI family BG11_3015 PF07690 Major Facilitator Superfamily BG11_3016 PF01047 MarR family BG11_3017 PF07690 Major Facilitator Superfamily BG11_3018 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_3018 PF00005 ABC transporter BG11_3019 PF00005 ABC transporter BG11_3019 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_302 PF00753 Metallo-beta-lactamase superfamily BG11_3020 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3021 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3022 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_3024 PF00582 Universal stress protein family BG11_3025 PF00916 Sulfate permease family BG11_3025 PF01740 STAS domain BG11_3027 PF00486 Transcriptional regulatory protein, C terminal BG11_3027 PF00072 Response regulator receiver domain BG11_3028 PF00672 HAMP domain BG11_3028 PF00989 PAS fold BG11_3028 PF00512 His Kinase A (phospho-acceptor) domain BG11_3028 PF18698 Histidine kinase sensor domain BG11_3028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3029 PF01872 RibD C-terminal domain BG11_3030 PF08279 HTH domain BG11_3030 PF13280 WYL domain BG11_3032 PF08281 Sigma-70, region 4 BG11_3032 PF04542 Sigma-70 region 2 BG11_3035 PF00324 Amino acid permease BG11_3036 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3037 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3038 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG11_3039 PF00005 ABC transporter BG11_3040 PF01235 Sodium:alanine symporter family BG11_3041 PF01636 Phosphotransferase enzyme family BG11_3043 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_3046 PF00128 Alpha amylase, catalytic domain BG11_3046 PF16657 Maltogenic Amylase, C-terminal domain BG11_3047 PF00367 phosphotransferase system, EIIB BG11_3047 PF02378 Phosphotransferase system, EIIC BG11_3048 PF07702 UTRA domain BG11_3048 PF00392 Bacterial regulatory proteins, gntR family BG11_3049 PF13520 Amino acid permease BG11_3050 PF00990 Diguanylate cyclase, GGDEF domain BG11_3050 PF03707 Bacterial signalling protein N terminal repeat BG11_3050 PF00563 EAL domain BG11_3053 PF13091 PLD-like domain BG11_3053 PF13396 Phospholipase_D-nuclease N-terminal BG11_3054 PF07728 AAA domain (dynein-related subfamily) BG11_3055 PF00092 von Willebrand factor type A domain BG11_3056 PF00293 NUDIX domain BG11_3056 PF13344 Haloacid dehalogenase-like hydrolase BG11_3057 PF01370 NAD dependent epimerase/dehydratase family BG11_3058 PF00155 Aminotransferase class I and II BG11_3059 PF00005 ABC transporter BG11_3060 PF01032 FecCD transport family BG11_3061 PF01032 FecCD transport family BG11_3062 PF01497 Periplasmic binding protein BG11_3063 PF00854 POT family BG11_3064 PF08141 Small acid-soluble spore protein H family BG11_3065 PF01022 Bacterial regulatory protein, arsR family BG11_3066 PF02652 L-lactate permease BG11_3067 PF10415 Fumarase C C-terminus BG11_3067 PF00206 Lyase BG11_3068 PF00571 CBS domain BG11_3068 PF03471 Transporter associated domain BG11_3068 PF01595 Cyclin M transmembrane N-terminal domain BG11_3069 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_3070 PF01773 Na+ dependent nucleoside transporter N-terminus BG11_3070 PF07662 Na+ dependent nucleoside transporter C-terminus BG11_3071 PF03816 Cell envelope-related transcriptional attenuator domain BG11_3072 PF04294 VanW like protein BG11_3076 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG11_3076 PF01447 Thermolysin metallopeptidase, catalytic domain BG11_3076 PF03413 Peptidase propeptide and YPEB domain BG11_3076 PF07504 Fungalysin/Thermolysin Propeptide Motif BG11_3079 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BG11_3079 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BG11_3079 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BG11_3080 PF00403 Heavy-metal-associated domain BG11_3081 PF01022 Bacterial regulatory protein, arsR family BG11_3082 PF13520 Amino acid permease BG11_3083 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG11_3083 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BG11_3087 PF00384 Molybdopterin oxidoreductase BG11_3087 PF00037 4Fe-4S binding domain BG11_3087 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BG11_3087 PF01568 Molydopterin dinucleotide binding domain BG11_3087 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BG11_3088 PF02634 FdhD/NarQ family BG11_3089 PF00583 Acetyltransferase (GNAT) family BG11_3089 PF13508 Acetyltransferase (GNAT) domain BG11_3091 PF00486 Transcriptional regulatory protein, C terminal BG11_3091 PF00072 Response regulator receiver domain BG11_3092 PF00989 PAS fold BG11_3092 PF18698 Histidine kinase sensor domain BG11_3092 PF00512 His Kinase A (phospho-acceptor) domain BG11_3092 PF00672 HAMP domain BG11_3092 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3094 PF00155 Aminotransferase class I and II BG11_3094 PF00392 Bacterial regulatory proteins, gntR family BG11_3095 PF00892 EamA-like transporter family BG11_3097 PF00390 Malic enzyme, N-terminal domain BG11_3097 PF03949 Malic enzyme, NAD binding domain BG11_3098 PF03390 2-hydroxycarboxylate transporter family BG11_3099 PF00072 Response regulator receiver domain BG11_31 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BG11_31 PF00730 HhH-GPD superfamily base excision DNA repair protein BG11_310 PF00144 Beta-lactamase BG11_3100 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG11_3100 PF17203 Single cache domain 3 BG11_3100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3100 PF00989 PAS fold BG11_3101 PF00672 HAMP domain BG11_3101 PF02743 Cache domain BG11_3101 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_3102 PF13529 Peptidase_C39 like family BG11_3104 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3104 PF00512 His Kinase A (phospho-acceptor) domain BG11_3105 PF00486 Transcriptional regulatory protein, C terminal BG11_3105 PF00072 Response regulator receiver domain BG11_3106 PF00149 Calcineurin-like phosphoesterase BG11_3107 PF13416 Bacterial extracellular solute-binding protein BG11_3108 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3109 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3110 PF00005 ABC transporter BG11_3110 PF17912 MalK OB fold domain BG11_3111 PF04309 Glycerol-3-phosphate responsive antiterminator BG11_3115 PF03600 Citrate transporter BG11_3116 PF12431 Transcriptional regulator BG11_3116 PF00072 Response regulator receiver domain BG11_3117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3117 PF00989 PAS fold BG11_3117 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG11_3117 PF17203 Single cache domain 3 BG11_3118 PF02743 Cache domain BG11_3118 PF00672 HAMP domain BG11_3118 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_3119 PF01145 SPFH domain / Band 7 family BG11_3119 PF15975 Flotillin BG11_3121 PF18496 Collagenase G catalytic helper subdomain BG11_3121 PF01752 Collagenase BG11_3121 PF08453 Peptidase family M9 N-terminal BG11_3122 PF02028 BCCT, betaine/carnitine/choline family transporter BG11_3128 PF01520 N-acetylmuramoyl-L-alanine amidase BG11_3128 PF08239 Bacterial SH3 domain BG11_3129 PF04688 SPP1 phage holin BG11_3148 PF03354 Phage Terminase BG11_3153 PF00589 Phage integrase family BG11_3157 PF01555 DNA methylase BG11_316 PF00753 Metallo-beta-lactamase superfamily BG11_3163 PF00692 dUTPase BG11_3168 PF00772 DnaB-like helicase N terminal domain BG11_3168 PF03796 DnaB-like helicase C terminal domain BG11_3176 PF01381 Helix-turn-helix BG11_3180 PF04285 Protein of unknown function (DUF444) BG11_3182 PF06798 PrkA serine protein kinase C-terminal domain BG11_3182 PF08298 PrkA AAA domain BG11_3184 PF00563 EAL domain BG11_3184 PF00990 Diguanylate cyclase, GGDEF domain BG11_3184 PF03707 Bacterial signalling protein N terminal repeat BG11_3185 PF00588 SpoU rRNA Methylase family BG11_3186 PF12671 Putative amidase domain BG11_3187 PF08331 Domain of unknown function (DUF1730) BG11_3189 PF13462 Thioredoxin BG11_319 PF03063 Prismane/CO dehydrogenase family BG11_3190 PF00912 Transglycosylase BG11_3190 PF00905 Penicillin binding protein transpeptidase domain BG11_3191 PF13344 Haloacid dehalogenase-like hydrolase BG11_3191 PF00293 NUDIX domain BG11_3192 PF01709 Transcriptional regulator BG11_32 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BG11_32 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BG11_3213 PF11023 Zinc-ribbon containing domain BG11_3214 PF01475 Ferric uptake regulator family BG11_3215 PF00578 AhpC/TSA family BG11_3216 PF07885 Ion channel BG11_3219 PF00005 ABC transporter BG11_322 PF13732 Domain of unknown function (DUF4162) BG11_322 PF00005 ABC transporter BG11_3220 PF00202 Aminotransferase class-III BG11_3221 PF01645 Conserved region in glutamate synthase BG11_3221 PF00310 Glutamine amidotransferases class-II BG11_3221 PF01493 GXGXG motif BG11_3221 PF04898 Glutamate synthase central domain BG11_3222 PF06081 Aromatic acid exporter family member 1 BG11_3223 PF00664 ABC transporter transmembrane region BG11_3223 PF00005 ABC transporter BG11_3224 PF04167 Protein of unknown function (DUF402) BG11_3225 PF14182 YgaB-like protein BG11_3226 PF04259 Small, acid-soluble spore protein, gamma-type BG11_3228 PF14815 NUDIX domain BG11_3228 PF00730 HhH-GPD superfamily base excision DNA repair protein BG11_3229 PF04307 LexA-binding, inner membrane-associated putative hydrolase BG11_323 PF01061 ABC-2 type transporter BG11_3230 PF14043 WVELL protein BG11_3231 PF08176 Small acid-soluble spore protein K family BG11_3234 PF02631 RecX family BG11_3235 PF08338 Domain of unknown function (DUF1731) BG11_3235 PF01370 NAD dependent epimerase/dehydratase family BG11_3236 PF01979 Amidohydrolase family BG11_3239 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BG11_3239 PF04101 Glycosyltransferase family 28 C-terminal domain BG11_324 PF05656 Protein of unknown function (DUF805) BG11_3240 PF04055 Radical SAM superfamily BG11_3241 PF01228 Glycine radical BG11_3241 PF02901 Pyruvate formate lyase-like BG11_3242 PF00535 Glycosyl transferase family 2 BG11_3243 PF00551 Formyl transferase BG11_3243 PF01370 NAD dependent epimerase/dehydratase family BG11_3243 PF02911 Formyl transferase, C-terminal domain BG11_3244 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG11_3244 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG11_3244 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG11_3245 PF00535 Glycosyl transferase family 2 BG11_3248 PF00144 Beta-lactamase BG11_3249 PF00367 phosphotransferase system, EIIB BG11_3249 PF02378 Phosphotransferase system, EIIC BG11_3250 PF04960 Glutaminase BG11_3255 PF01546 Peptidase family M20/M25/M40 BG11_3255 PF07687 Peptidase dimerisation domain BG11_3257 PF01416 tRNA pseudouridine synthase BG11_3258 PF01938 TRAM domain BG11_3258 PF05958 tRNA (Uracil-5-)-methyltransferase BG11_3259 PF00730 HhH-GPD superfamily base excision DNA repair protein BG11_3260 PF01522 Polysaccharide deacetylase BG11_3261 PF05683 Fumarase C-terminus BG11_3261 PF05681 Fumarate hydratase (Fumerase) BG11_3263 PF04055 Radical SAM superfamily BG11_3263 PF08756 YfkB-like domain BG11_3264 PF14167 YfkD-like protein BG11_3265 PF01699 Sodium/calcium exchanger protein BG11_3266 PF16242 Pyridoxamine 5'-phosphate oxidase like BG11_3269 PF09335 SNARE associated Golgi protein BG11_3271 PF10502 Signal peptidase, peptidase S26 BG11_3274 PF00892 EamA-like transporter family BG11_3276 PF03631 Virulence factor BrkB BG11_3278 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG11_3279 PF06569 Protein of unknown function (DUF1128) BG11_328 PF00440 Bacterial regulatory proteins, tetR family BG11_3280 PF00690 Cation transporter/ATPase, N-terminus BG11_3280 PF00689 Cation transporting ATPase, C-terminus BG11_3281 PF05816 Toxic anion resistance protein (TelA) BG11_3282 PF14266 Putative component of 'biosynthetic module' BG11_3283 PF03741 Integral membrane protein TerC family BG11_3284 PF02342 TerD domain BG11_3285 PF02342 TerD domain BG11_3286 PF02342 TerD domain BG11_3287 PF00480 ROK family BG11_3289 PF03129 Anticodon binding domain BG11_3289 PF09180 Prolyl-tRNA synthetase, C-terminal BG11_3289 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG11_3292 PF11700 Vacuole effluxer Atg22 like BG11_3296 PF08360 QacR-like protein, C-terminal region BG11_3296 PF00440 Bacterial regulatory proteins, tetR family BG11_33 PF02805 Metal binding domain of Ada BG11_33 PF12833 Helix-turn-helix domain BG11_330 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BG11_330 PF00535 Glycosyl transferase family 2 BG11_3302 PF00704 Glycosyl hydrolases family 18 BG11_3302 PF00041 Fibronectin type III domain BG11_3303 PF12848 ABC transporter BG11_3303 PF00005 ABC transporter BG11_3304 PF00005 ABC transporter BG11_3306 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3307 PF01910 Thiamine-binding protein BG11_3308 PF00672 HAMP domain BG11_3308 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_3309 PF03605 Anaerobic c4-dicarboxylate membrane transporter BG11_331 PF04542 Sigma-70 region 2 BG11_3310 PF02581 Thiamine monophosphate synthase BG11_3311 PF02110 Hydroxyethylthiazole kinase family BG11_3312 PF01131 DNA topoisomerase BG11_3312 PF01751 Toprim domain BG11_3313 PF01061 ABC-2 type transporter BG11_3314 PF03372 Endonuclease/Exonuclease/phosphatase family BG11_3315 PF00367 phosphotransferase system, EIIB BG11_3315 PF02378 Phosphotransferase system, EIIC BG11_3315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG11_3316 PF16657 Maltogenic Amylase, C-terminal domain BG11_3316 PF00128 Alpha amylase, catalytic domain BG11_3319 PF00696 Amino acid kinase family BG11_332 PF12791 Anti-sigma factor N-terminus BG11_3320 PF13520 Amino acid permease BG11_3321 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BG11_3321 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BG11_3323 PF01316 Arginine repressor, DNA binding domain BG11_3323 PF02863 Arginine repressor, C-terminal domain BG11_3324 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_3324 PF12729 Four helix bundle sensory module for signal transduction BG11_3324 PF00672 HAMP domain BG11_3325 PF00005 ABC transporter BG11_3326 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG11_3327 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3329 PF01266 FAD dependent oxidoreductase BG11_3329 PF00355 Rieske [2Fe-2S] domain BG11_333 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BG11_333 PF01522 Polysaccharide deacetylase BG11_3330 PF07690 Major Facilitator Superfamily BG11_3331 PF10127 RNA repair pathway DNA polymerase beta family BG11_334 PF01022 Bacterial regulatory protein, arsR family BG11_3341 PF12728 Helix-turn-helix domain BG11_3343 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_3344 PF01497 Periplasmic binding protein BG11_3345 PF01032 FecCD transport family BG11_3346 PF01032 FecCD transport family BG11_3347 PF00596 Class II Aldolase and Adducin N-terminal domain BG11_3349 PF01636 Phosphotransferase enzyme family BG11_335 PF01638 HxlR-like helix-turn-helix BG11_3350 PF00578 AhpC/TSA family BG11_3351 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_3351 PF13192 Thioredoxin domain BG11_3353 PF07687 Peptidase dimerisation domain BG11_3353 PF01546 Peptidase family M20/M25/M40 BG11_3356 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG11_3356 PF13378 Enolase C-terminal domain-like BG11_3359 PF07308 Protein of unknown function (DUF1456) BG11_336 PF02525 Flavodoxin-like fold BG11_3361 PF01207 Dihydrouridine synthase (Dus) BG11_3362 PF02475 Met-10+ like-protein BG11_3362 PF01938 TRAM domain BG11_3362 PF05958 tRNA (Uracil-5-)-methyltransferase BG11_3363 PF07670 Nucleoside recognition BG11_3363 PF07662 Na+ dependent nucleoside transporter C-terminus BG11_3363 PF01773 Na+ dependent nucleoside transporter N-terminus BG11_3366 PF02073 Thermophilic metalloprotease (M29) BG11_3367 PF00893 Small Multidrug Resistance protein BG11_3368 PF00171 Aldehyde dehydrogenase family BG11_3369 PF00158 Sigma-54 interaction domain BG11_337 PF13193 AMP-binding enzyme C-terminal domain BG11_337 PF00501 AMP-binding enzyme BG11_3370 PF00202 Aminotransferase class-III BG11_3371 PF13419 Haloacid dehalogenase-like hydrolase BG11_3372 PF00781 Diacylglycerol kinase catalytic domain BG11_3373 PF02934 GatB/GatE catalytic domain BG11_3373 PF02637 GatB domain BG11_3374 PF01425 Amidase BG11_3375 PF02686 Glu-tRNAGln amidotransferase C subunit BG11_3376 PF05360 yiaA/B two helix domain BG11_3377 PF01047 MarR family BG11_3378 PF17886 HSP20-like domain found in ArsA BG11_3378 PF02374 Anion-transporting ATPase BG11_338 PF13302 Acetyltransferase (GNAT) domain BG11_3381 PF03180 NLPA lipoprotein BG11_3382 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3383 PF00005 ABC transporter BG11_3383 PF09383 NIL domain BG11_3384 PF00857 Isochorismatase family BG11_3386 PF00171 Aldehyde dehydrogenase family BG11_3387 PF01925 Sulfite exporter TauE/SafE BG11_3388 PF07537 CamS sex pheromone cAM373 precursor BG11_3389 PF00533 BRCA1 C Terminus (BRCT) domain BG11_3389 PF12826 Helix-hairpin-helix motif BG11_3389 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BG11_3389 PF03120 NAD-dependent DNA ligase OB-fold domain BG11_3389 PF01653 NAD-dependent DNA ligase adenylation domain BG11_3390 PF13361 UvrD-like helicase C-terminal domain BG11_3390 PF00580 UvrD/REP helicase N-terminal domain BG11_3391 PF01884 PcrB family BG11_3395 PF02843 Phosphoribosylglycinamide synthetase, C domain BG11_3395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BG11_3395 PF02844 Phosphoribosylglycinamide synthetase, N domain BG11_3396 PF01808 AICARFT/IMPCHase bienzyme BG11_3396 PF02142 MGS-like domain BG11_3397 PF00551 Formyl transferase BG11_3398 PF00586 AIR synthase related protein, N-terminal domain BG11_3398 PF02769 AIR synthase related protein, C-terminal domain BG11_3399 PF00156 Phosphoribosyl transferase domain BG11_34 PF03372 Endonuclease/Exonuclease/phosphatase family BG11_3400 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BG11_3400 PF00586 AIR synthase related protein, N-terminal domain BG11_3400 PF02769 AIR synthase related protein, C-terminal domain BG11_3402 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BG11_3403 PF01259 SAICAR synthetase BG11_3404 PF00206 Lyase BG11_3404 PF10397 Adenylosuccinate lyase C-terminus BG11_3405 PF02222 ATP-grasp domain BG11_3405 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BG11_3406 PF00731 AIR carboxylase BG11_3412 PF00892 EamA-like transporter family BG11_3419 PF00072 Response regulator receiver domain BG11_3419 PF00486 Transcriptional regulatory protein, C terminal BG11_342 PF02567 Phenazine biosynthesis-like protein BG11_3420 PF00512 His Kinase A (phospho-acceptor) domain BG11_3420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3421 PF00005 ABC transporter BG11_3423 PF02673 Bacitracin resistance protein BacA BG11_3428 PF01323 DSBA-like thioredoxin domain BG11_3434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3434 PF00989 PAS fold BG11_3434 PF00512 His Kinase A (phospho-acceptor) domain BG11_3434 PF16736 Single Cache-like BG11_3435 PF00486 Transcriptional regulatory protein, C terminal BG11_3435 PF00072 Response regulator receiver domain BG11_3436 PF00860 Permease family BG11_3437 PF02540 NAD synthase BG11_3437 PF00117 Glutamine amidotransferase class-I BG11_3437 PF00958 GMP synthase C terminal domain BG11_3438 PF00118 TCP-1/cpn60 chaperonin family BG11_3439 PF00166 Chaperonin 10 Kd subunit BG11_3440 PF02517 CPBP intramembrane metalloprotease BG11_3442 PF02629 CoA binding domain BG11_3442 PF06971 Putative DNA-binding protein N-terminus BG11_3443 PF00005 ABC transporter BG11_3443 PF16326 ABC transporter C-terminal domain BG11_3443 PF12848 ABC transporter BG11_3444 PF00814 Glycoprotease family BG11_3445 PF00583 Acetyltransferase (GNAT) family BG11_3446 PF00814 Glycoprotease family BG11_3447 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BG11_3465 PF17283 SprT-like zinc ribbon domain BG11_3465 PF10263 SprT-like family BG11_3466 PF16921 Tex protein YqgF-like domain BG11_3466 PF17674 HHH domain BG11_3466 PF09371 Tex-like protein N-terminal domain BG11_3466 PF00575 S1 RNA binding domain BG11_3467 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BG11_3468 PF01402 Ribbon-helix-helix protein, copG family BG11_3469 PF00842 Alanine racemase, C-terminal domain BG11_3469 PF01168 Alanine racemase, N-terminal domain BG11_3471 PF01648 4'-phosphopantetheinyl transferase superfamily BG11_3472 PF03851 UV-endonuclease UvdE BG11_3473 PF01694 Rhomboid family BG11_3474 PF00270 DEAD/DEAH box helicase BG11_3474 PF00271 Helicase conserved C-terminal domain BG11_3475 PF08245 Mur ligase middle domain BG11_3475 PF02875 Mur ligase family, glutamate ligase domain BG11_3475 PF01225 Mur ligase family, catalytic domain BG11_3476 PF07478 D-ala D-ala ligase C-terminus BG11_3476 PF01820 D-ala D-ala ligase N-terminus BG11_3477 PF07690 Major Facilitator Superfamily BG11_3479 PF01557 Fumarylacetoacetate (FAA) hydrolase family BG11_348 PF00248 Aldo/keto reductase family BG11_3480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_3487 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_3487 PF00005 ABC transporter BG11_3488 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_3488 PF00005 ABC transporter BG11_3489 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3489 PF12911 N-terminal TM domain of oligopeptide transport permease C BG11_349 PF01638 HxlR-like helix-turn-helix BG11_3490 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3491 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_3496 PF00005 ABC transporter BG11_3497 PF00196 Bacterial regulatory proteins, luxR family BG11_3497 PF00072 Response regulator receiver domain BG11_3498 PF07730 Histidine kinase BG11_3499 PF12848 ABC transporter BG11_3499 PF16326 ABC transporter C-terminal domain BG11_3499 PF00005 ABC transporter BG11_35 PF01497 Periplasmic binding protein BG11_350 PF01638 HxlR-like helix-turn-helix BG11_3503 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BG11_3504 PF01026 TatD related DNase BG11_3507 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_3507 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_3509 PF00356 Bacterial regulatory proteins, lacI family BG11_3509 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG11_3511 PF01553 Acyltransferase BG11_3513 PF14142 YrzO-like protein BG11_3514 PF00892 EamA-like transporter family BG11_3515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_3515 PF03466 LysR substrate binding domain BG11_3518 PF12728 Helix-turn-helix domain BG11_3518 PF12727 PBP superfamily domain BG11_352 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG11_352 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG11_3520 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3521 PF06800 Sugar transport protein BG11_3522 PF04973 Nicotinamide mononucleotide transporter BG11_3523 PF03807 NADP oxidoreductase coenzyme F420-dependent BG11_3523 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG11_3524 PF00248 Aldo/keto reductase family BG11_3525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_3526 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_3528 PF00440 Bacterial regulatory proteins, tetR family BG11_353 PF00392 Bacterial regulatory proteins, gntR family BG11_353 PF07702 UTRA domain BG11_3530 PF12833 Helix-turn-helix domain BG11_3532 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_3533 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_3533 PF00005 ABC transporter BG11_3534 PF00005 ABC transporter BG11_3534 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_3535 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3535 PF12911 N-terminal TM domain of oligopeptide transport permease C BG11_3536 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3539 PF07690 Major Facilitator Superfamily BG11_354 PF03960 ArsC family BG11_3541 PF07690 Major Facilitator Superfamily BG11_3542 PF01565 FAD binding domain BG11_3545 PF03180 NLPA lipoprotein BG11_3546 PF00005 ABC transporter BG11_3546 PF09383 NIL domain BG11_3547 PF00528 Binding-protein-dependent transport system inner membrane component BG11_3554 PF07676 WD40-like Beta Propeller Repeat BG11_3554 PF00326 Prolyl oligopeptidase family BG11_3555 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BG11_3555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG11_3556 PF02447 GntP family permease BG11_3557 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG11_3557 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG11_3558 PF00392 Bacterial regulatory proteins, gntR family BG11_3558 PF07729 FCD domain BG11_3559 PF00561 alpha/beta hydrolase fold BG11_3560 PF00144 Beta-lactamase BG11_3561 PF01380 SIS domain BG11_3562 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BG11_3562 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BG11_3562 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BG11_3562 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BG11_3563 PF07949 YbbR-like protein BG11_3564 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG11_3565 PF00491 Arginase family BG11_3566 PF02595 Glycerate kinase family BG11_3581 PF01522 Polysaccharide deacetylase BG11_3582 PF14089 KinB-signalling pathway activation in sporulation BG11_3583 PF17898 Spore germination GerD central core domain BG11_3584 PF10609 NUBPL iron-transfer P-loop NTPase BG11_3585 PF01520 N-acetylmuramoyl-L-alanine amidase BG11_3587 PF00380 Ribosomal protein S9/S16 BG11_3588 PF00572 Ribosomal protein L13 BG11_3589 PF01416 tRNA pseudouridine synthase BG11_3590 PF02361 Cobalt transport protein BG11_3591 PF00005 ABC transporter BG11_3592 PF00005 ABC transporter BG11_3593 PF01196 Ribosomal protein L17 BG11_3594 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BG11_3594 PF01000 RNA polymerase Rpb3/RpoA insert domain BG11_3594 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BG11_3595 PF00411 Ribosomal protein S11 BG11_3596 PF00416 Ribosomal protein S13/S18 BG11_3597 PF00444 Ribosomal protein L36 BG11_3598 PF01176 Translation initiation factor 1A / IF-1 BG11_3599 PF00557 Metallopeptidase family M24 BG11_36 PF01032 FecCD transport family BG11_3600 PF05191 Adenylate kinase, active site lid BG11_3601 PF00344 SecY translocase BG11_3602 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BG11_3603 PF00327 Ribosomal protein L30p/L7e BG11_3604 PF03719 Ribosomal protein S5, C-terminal domain BG11_3604 PF00333 Ribosomal protein S5, N-terminal domain BG11_3605 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BG11_3606 PF00347 Ribosomal protein L6 BG11_3607 PF00410 Ribosomal protein S8 BG11_3608 PF00253 Ribosomal protein S14p/S29e BG11_3609 PF00673 ribosomal L5P family C-terminus BG11_3609 PF00281 Ribosomal protein L5 BG11_3610 PF00467 KOW motif BG11_3610 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BG11_3611 PF00238 Ribosomal protein L14p/L23e BG11_3612 PF00366 Ribosomal protein S17 BG11_3613 PF00831 Ribosomal L29 protein BG11_3614 PF00252 Ribosomal protein L16p/L10e BG11_3615 PF00189 Ribosomal protein S3, C-terminal domain BG11_3615 PF07650 KH domain BG11_3616 PF00237 Ribosomal protein L22p/L17e BG11_3617 PF00203 Ribosomal protein S19 BG11_3618 PF00181 Ribosomal Proteins L2, RNA binding domain BG11_3618 PF03947 Ribosomal Proteins L2, C-terminal domain BG11_3619 PF00276 Ribosomal protein L23 BG11_362 PF03928 Haem-degrading BG11_3620 PF00573 Ribosomal protein L4/L1 family BG11_3621 PF00297 Ribosomal protein L3 BG11_3622 PF00338 Ribosomal protein S10p/S20e BG11_3623 PF03143 Elongation factor Tu C-terminal domain BG11_3623 PF03144 Elongation factor Tu domain 2 BG11_3623 PF00009 Elongation factor Tu GTP binding domain BG11_3624 PF00009 Elongation factor Tu GTP binding domain BG11_3624 PF03144 Elongation factor Tu domain 2 BG11_3624 PF00679 Elongation factor G C-terminus BG11_3624 PF14492 Elongation Factor G, domain II BG11_3624 PF03764 Elongation factor G, domain IV BG11_3625 PF00177 Ribosomal protein S7p/S5e BG11_3626 PF00164 Ribosomal protein S12/S23 BG11_3627 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BG11_3628 PF00623 RNA polymerase Rpb1, domain 2 BG11_3628 PF05000 RNA polymerase Rpb1, domain 4 BG11_3628 PF04997 RNA polymerase Rpb1, domain 1 BG11_3628 PF04983 RNA polymerase Rpb1, domain 3 BG11_3628 PF04998 RNA polymerase Rpb1, domain 5 BG11_3629 PF04560 RNA polymerase Rpb2, domain 7 BG11_3629 PF00562 RNA polymerase Rpb2, domain 6 BG11_3629 PF10385 RNA polymerase beta subunit external 1 domain BG11_3629 PF04563 RNA polymerase beta subunit BG11_3629 PF04561 RNA polymerase Rpb2, domain 2 BG11_3629 PF04565 RNA polymerase Rpb2, domain 3 BG11_363 PF00248 Aldo/keto reductase family BG11_3630 PF05175 Methyltransferase small domain BG11_3631 PF16320 Ribosomal protein L7/L12 dimerisation domain BG11_3631 PF00542 Ribosomal protein L7/L12 C-terminal domain BG11_3632 PF00466 Ribosomal protein L10 BG11_3633 PF00687 Ribosomal protein L1p/L10e family BG11_3634 PF03946 Ribosomal protein L11, N-terminal domain BG11_3634 PF00298 Ribosomal protein L11, RNA binding domain BG11_3635 PF02357 Transcription termination factor nusG BG11_3635 PF00467 KOW motif BG11_3636 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BG11_3637 PF08281 Sigma-70, region 4 BG11_3637 PF04542 Sigma-70 region 2 BG11_3638 PF05991 YacP-like NYN domain BG11_3639 PF08032 RNA 2'-O ribose methyltransferase substrate binding BG11_3639 PF00588 SpoU rRNA Methylase family BG11_3640 PF00636 Ribonuclease III domain BG11_3641 PF01406 tRNA synthetases class I (C) catalytic domain BG11_3641 PF09190 DALR domain BG11_3642 PF00132 Bacterial transferase hexapeptide (six repeats) BG11_3642 PF06426 Serine acetyltransferase, N-terminal BG11_3643 PF00749 tRNA synthetases class I (E and Q), catalytic domain BG11_3644 PF02542 YgbB family BG11_3645 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BG11_3647 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG11_3647 PF10635 DisA bacterial checkpoint controller linker region BG11_3648 PF18073 Rubredoxin metal binding domain BG11_3649 PF00004 ATPase family associated with various cellular activities (AAA) BG11_3649 PF17871 AAA lid domain BG11_3649 PF02861 Clp amino terminal domain, pathogenicity island component BG11_3649 PF07724 AAA domain (Cdc48 subfamily) BG11_3649 PF10431 C-terminal, D2-small domain, of ClpB protein BG11_3650 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BG11_3651 PF02151 UvrB/uvrC motif BG11_3652 PF17727 CtsR C-terminal dimerization domain BG11_3652 PF05848 CtsR N-terminal HTH domain BG11_3669 PF00152 tRNA synthetases class II (D, K and N) BG11_3669 PF01336 OB-fold nucleic acid binding domain BG11_367 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG11_367 PF01447 Thermolysin metallopeptidase, catalytic domain BG11_367 PF03413 Peptidase propeptide and YPEB domain BG11_367 PF07504 Fungalysin/Thermolysin Propeptide Motif BG11_3670 PF01207 Dihydrouridine synthase (Dus) BG11_3671 PF01381 Helix-turn-helix BG11_3672 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BG11_3673 PF02152 Dihydroneopterin aldolase BG11_3674 PF00809 Pterin binding enzyme BG11_3675 PF01063 Amino-transferase class IV BG11_3676 PF00117 Glutamine amidotransferase class-I BG11_3677 PF00425 chorismate binding enzyme BG11_3677 PF04715 Anthranilate synthase component I, N terminal region BG11_3678 PF00291 Pyridoxal-phosphate dependent enzyme BG11_3679 PF01430 Hsp33 protein BG11_368 PF00106 short chain dehydrogenase BG11_3680 PF03309 Type III pantothenate kinase BG11_3681 PF17862 AAA+ lid domain BG11_3681 PF06480 FtsH Extracellular BG11_3681 PF01434 Peptidase family M41 BG11_3681 PF00004 ATPase family associated with various cellular activities (AAA) BG11_3683 PF09179 TilS substrate binding domain BG11_3683 PF11734 TilS substrate C-terminal domain BG11_3683 PF01171 PP-loop family BG11_3684 PF07228 Stage II sporulation protein E (SpoIIE) BG11_3687 PF00575 S1 RNA binding domain BG11_3689 PF09578 Spore cortex protein YabQ (Spore_YabQ) BG11_3690 PF07873 YabP family BG11_3691 PF01479 S4 domain BG11_3692 PF03819 MazG nucleotide pyrophosphohydrolase domain BG11_3692 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG11_3693 PF14667 Polysaccharide biosynthesis C-terminal domain BG11_3693 PF01943 Polysaccharide biosynthesis protein BG11_3694 PF15714 Stage V sporulation protein T C-terminal, transcription factor BG11_3694 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG11_3695 PF00271 Helicase conserved C-terminal domain BG11_3695 PF17757 UvrB interaction domain BG11_3695 PF03461 TRCF domain BG11_3695 PF02559 CarD-like/TRCF domain BG11_3695 PF00270 DEAD/DEAH box helicase BG11_3697 PF01195 Peptidyl-tRNA hydrolase BG11_3698 PF14572 Phosphoribosyl synthetase-associated domain BG11_3698 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BG11_3699 PF00132 Bacterial transferase hexapeptide (six repeats) BG11_3699 PF00483 Nucleotidyl transferase BG11_37 PF01032 FecCD transport family BG11_370 PF00107 Zinc-binding dehydrogenase BG11_370 PF08240 Alcohol dehydrogenase GroES-like domain BG11_3700 PF04026 SpoVG BG11_3701 PF01042 Endoribonuclease L-PSP BG11_3702 PF09182 Bacterial purine repressor, N-terminal BG11_3702 PF00156 Phosphoribosyl transferase domain BG11_3703 PF08544 GHMP kinases C terminal BG11_3703 PF00288 GHMP kinases N terminal domain BG11_3704 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_3705 PF06257 Biofilm formation stimulator VEG BG11_3706 PF05582 YabG peptidase U57 BG11_3707 PF00398 Ribosomal RNA adenine dimethylase BG11_3708 PF13331 Domain of unknown function (DUF4093) BG11_3708 PF13662 Toprim domain BG11_3709 PF01026 TatD related DNase BG11_371 PF00296 Luciferase-like monooxygenase BG11_3710 PF09334 tRNA synthetases class I (M) BG11_3710 PF01588 Putative tRNA binding domain BG11_3710 PF08264 Anticodon-binding domain of tRNA BG11_3711 PF18277 AbrB C-terminal domain BG11_3711 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG11_3712 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG11_3713 PF01541 GIY-YIG catalytic domain BG11_3714 PF05175 Methyltransferase small domain BG11_3715 PF06156 Initiation control protein YabA BG11_3716 PF04468 PSP1 C-terminal conserved region BG11_3717 PF09115 DNA polymerase III, delta subunit, C terminal BG11_3718 PF02223 Thymidylate kinase BG11_3719 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BG11_3719 PF01276 Orn/Lys/Arg decarboxylase, major domain BG11_3727 PF07441 SigmaK-factor processing regulatory protein BofA BG11_3728 PF10704 Protein of unknown function (DUF2508) BG11_3729 PF13662 Toprim domain BG11_3729 PF02132 RecR protein BG11_373 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BG11_373 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BG11_3730 PF02575 YbaB/EbfC DNA-binding family BG11_3731 PF12169 DNA polymerase III subunits gamma and tau domain III BG11_3732 PF14437 MafB19-like deaminase BG11_3733 PF00857 Isochorismatase family BG11_3734 PF01712 Deoxynucleoside kinase BG11_3735 PF01712 Deoxynucleoside kinase BG11_3738 PF02403 Seryl-tRNA synthetase N-terminal domain BG11_3738 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG11_3739 PF01174 SNO glutamine amidotransferase family BG11_374 PF00456 Transketolase, thiamine diphosphate binding domain BG11_374 PF02780 Transketolase, C-terminal domain BG11_374 PF02779 Transketolase, pyrimidine binding domain BG11_3740 PF01680 SOR/SNZ family BG11_3741 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_3741 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_3742 PF00478 IMP dehydrogenase / GMP reductase domain BG11_3742 PF00571 CBS domain BG11_3743 PF14175 YaaC-like Protein BG11_375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG11_375 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BG11_3750 PF00521 DNA gyrase/topoisomerase IV, subunit A BG11_3750 PF03989 DNA gyrase C-terminal domain, beta-propeller BG11_3751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3751 PF00204 DNA gyrase B BG11_3751 PF00986 DNA gyrase B subunit, carboxyl terminus BG11_3751 PF01751 Toprim domain BG11_3752 PF02463 RecF/RecN/SMC N terminal domain BG11_3754 PF02768 DNA polymerase III beta subunit, C-terminal domain BG11_3754 PF02767 DNA polymerase III beta subunit, central domain BG11_3754 PF00712 DNA polymerase III beta subunit, N-terminal domain BG11_3755 PF11638 DnaA N-terminal domain BG11_3755 PF00308 Bacterial dnaA protein BG11_3755 PF08299 Bacterial dnaA protein helix-turn-helix BG11_3756 PF00468 Ribosomal protein L34 BG11_3757 PF00825 Ribonuclease P BG11_3758 PF02096 60Kd inner membrane protein BG11_3759 PF01424 R3H domain BG11_3759 PF14804 Jag N-terminus BG11_376 PF00923 Transaldolase/Fructose-6-phosphate aldolase BG11_3760 PF10396 GTP-binding protein TrmE N-terminus BG11_3760 PF12631 MnmE helical domain BG11_3760 PF01926 50S ribosome-binding GTPase BG11_3761 PF01134 Glucose inhibited division protein A BG11_3761 PF13932 GidA associated domain BG11_3762 PF02527 rRNA small subunit methyltransferase G BG11_3763 PF17762 HTH domain found in ParB protein BG11_3763 PF02195 ParB-like nuclease domain BG11_3764 PF13614 AAA domain BG11_3765 PF17762 HTH domain found in ParB protein BG11_3765 PF02195 ParB-like nuclease domain BG11_3766 PF06866 Protein of unknown function (DUF1256) BG11_3767 PF00924 Mechanosensitive ion channel BG11_3768 PF06107 Bacterial protein of unknown function (DUF951) BG11_3769 PF06071 Protein of unknown function (DUF933) BG11_3769 PF01926 50S ribosome-binding GTPase BG11_377 PF02447 GntP family permease BG11_3770 PF01250 Ribosomal protein S6 BG11_3771 PF00436 Single-strand binding protein family BG11_3772 PF01084 Ribosomal protein S18 BG11_3773 PF09991 Predicted membrane protein (DUF2232) BG11_3774 PF02272 DHHA1 domain BG11_3774 PF01368 DHH family BG11_3775 PF03948 Ribosomal protein L9, C-terminal domain BG11_3775 PF01281 Ribosomal protein L9, N-terminal domain BG11_3776 PF00772 DnaB-like helicase N terminal domain BG11_3776 PF03796 DnaB-like helicase C terminal domain BG11_3777 PF00709 Adenylosuccinate synthetase BG11_378 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG11_378 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG11_3782 PF00072 Response regulator receiver domain BG11_3782 PF00486 Transcriptional regulatory protein, C terminal BG11_3783 PF00672 HAMP domain BG11_3783 PF13426 PAS domain BG11_3783 PF00512 His Kinase A (phospho-acceptor) domain BG11_3783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3784 PF07435 YycH protein BG11_3785 PF09648 YycH protein BG11_3786 PF00753 Metallo-beta-lactamase superfamily BG11_3787 PF13180 PDZ domain BG11_3789 PF02590 Predicted SPOUT methyltransferase BG11_379 PF10282 Lactonase, 7-bladed beta-propeller BG11_3791 PF08439 Oligopeptidase F BG11_3791 PF01432 Peptidase family M3 BG11_3792 PF00478 IMP dehydrogenase / GMP reductase domain BG11_3794 PF00271 Helicase conserved C-terminal domain BG11_3794 PF00270 DEAD/DEAH box helicase BG11_3794 PF03880 DbpA RNA binding domain BG11_3796 PF03006 Haemolysin-III related BG11_3797 PF16363 GDP-mannose 4,6 dehydratase BG11_3799 PF02293 AmiS/UreI family transporter BG11_38 PF00005 ABC transporter BG11_380 PF06906 Protein of unknown function (DUF1272) BG11_3801 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG11_3801 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG11_3802 PF02898 Nitric oxide synthase, oxygenase domain BG11_3803 PF02028 BCCT, betaine/carnitine/choline family transporter BG11_3804 PF07690 Major Facilitator Superfamily BG11_3805 PF07694 5TMR of 5TMR-LYT BG11_3805 PF06580 Histidine kinase BG11_3805 PF13492 GAF domain BG11_3805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3806 PF00072 Response regulator receiver domain BG11_3806 PF04397 LytTr DNA-binding domain BG11_3807 PF03788 LrgA family BG11_3808 PF04172 LrgB-like family BG11_3809 PF01594 AI-2E family transporter BG11_381 PF00805 Pentapeptide repeats (8 copies) BG11_3810 PF01641 SelR domain BG11_3810 PF01625 Peptide methionine sulfoxide reductase BG11_3811 PF00873 AcrB/AcrD/AcrF family BG11_3812 PF00440 Bacterial regulatory proteins, tetR family BG11_3813 PF00535 Glycosyl transferase family 2 BG11_3817 PF00005 ABC transporter BG11_3817 PF12848 ABC transporter BG11_3818 PF00535 Glycosyl transferase family 2 BG11_382 PF00892 EamA-like transporter family BG11_3820 PF03061 Thioesterase superfamily BG11_3822 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_3823 PF03458 UPF0126 domain BG11_3826 PF03808 Glycosyl transferase WecB/TagA/CpsF family BG11_3827 PF07690 Major Facilitator Superfamily BG11_3828 PF04397 LytTr DNA-binding domain BG11_3828 PF00072 Response regulator receiver domain BG11_3829 PF02554 Carbon starvation protein CstA BG11_3829 PF13722 5TM C-terminal transporter carbon starvation CstA BG11_383 PF13411 MerR HTH family regulatory protein BG11_3830 PF04328 Selenoprotein, putative BG11_3831 PF00990 Diguanylate cyclase, GGDEF domain BG11_3831 PF07694 5TMR of 5TMR-LYT BG11_3832 PF08543 Phosphomethylpyrimidine kinase BG11_3833 PF07730 Histidine kinase BG11_3833 PF13185 GAF domain BG11_3834 PF00196 Bacterial regulatory proteins, luxR family BG11_3834 PF00072 Response regulator receiver domain BG11_3835 PF02525 Flavodoxin-like fold BG11_3836 PF00027 Cyclic nucleotide-binding domain BG11_3837 PF13419 Haloacid dehalogenase-like hydrolase BG11_3839 PF01053 Cys/Met metabolism PLP-dependent enzyme BG11_384 PF01595 Cyclin M transmembrane N-terminal domain BG11_384 PF03471 Transporter associated domain BG11_384 PF00571 CBS domain BG11_3840 PF04204 Homoserine O-succinyltransferase BG11_3841 PF03447 Homoserine dehydrogenase, NAD binding domain BG11_3841 PF01842 ACT domain BG11_3841 PF00742 Homoserine dehydrogenase BG11_3843 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG11_3843 PF00356 Bacterial regulatory proteins, lacI family BG11_3844 PF13472 GDSL-like Lipase/Acylhydrolase family BG11_3845 PF00005 ABC transporter BG11_3846 PF12679 ABC-2 family transporter protein BG11_3847 PF03167 Uracil DNA glycosylase superfamily BG11_3848 PF12823 Domain of unknown function (DUF3817) BG11_3850 PF00860 Permease family BG11_3851 PF02254 TrkA-N domain BG11_3851 PF07885 Ion channel BG11_3853 PF04241 Protein of unknown function (DUF423) BG11_3854 PF09671 Spore coat protein (Spore_GerQ) BG11_3855 PF07486 Cell Wall Hydrolase BG11_3856 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_3856 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_3858 PF01515 Phosphate acetyl/butaryl transferase BG11_386 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_3860 PF03099 Biotin/lipoate A/B protein ligase family BG11_3863 PF07293 Protein of unknown function (DUF1450) BG11_3864 PF01032 FecCD transport family BG11_3865 PF01032 FecCD transport family BG11_3866 PF00005 ABC transporter BG11_3867 PF01497 Periplasmic binding protein BG11_3868 PF01966 HD domain BG11_3869 PF01361 Tautomerase enzyme BG11_3870 PF02163 Peptidase family M50 BG11_3871 PF08741 YwhD family BG11_3872 PF00912 Transglycosylase BG11_3872 PF00905 Penicillin binding protein transpeptidase domain BG11_3873 PF03009 Glycerophosphoryl diester phosphodiesterase family BG11_3874 PF13411 MerR HTH family regulatory protein BG11_3875 PF07690 Major Facilitator Superfamily BG11_3876 PF17284 Spermidine synthase tetramerisation domain BG11_3877 PF00491 Arginase family BG11_3880 PF02016 LD-carboxypeptidase N-terminal domain BG11_3880 PF17676 LD-carboxypeptidase C-terminal domain BG11_3881 PF09148 Domain of unknown function (DUF1934) BG11_3882 PF05746 DALR anticodon binding domain BG11_3882 PF00750 tRNA synthetases class I (R) BG11_3882 PF03485 Arginyl tRNA synthetase N terminal domain BG11_3883 PF04542 Sigma-70 region 2 BG11_3883 PF08281 Sigma-70, region 4 BG11_3887 PF02225 PA domain BG11_3887 PF04389 Peptidase family M28 BG11_3889 PF00557 Metallopeptidase family M24 BG11_3890 PF00005 ABC transporter BG11_3891 PF00196 Bacterial regulatory proteins, luxR family BG11_3891 PF00072 Response regulator receiver domain BG11_3894 PF00563 EAL domain BG11_3894 PF00990 Diguanylate cyclase, GGDEF domain BG11_3894 PF03707 Bacterial signalling protein N terminal repeat BG11_3895 PF03851 UV-endonuclease UvdE BG11_3896 PF13091 PLD-like domain BG11_3897 PF02754 Cysteine-rich domain BG11_3897 PF13183 4Fe-4S dicluster domain BG11_3898 PF02803 Thiolase, C-terminal domain BG11_3898 PF00108 Thiolase, N-terminal domain BG11_3899 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BG11_3899 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BG11_39 PF00756 Putative esterase BG11_390 PF07690 Major Facilitator Superfamily BG11_3900 PF02770 Acyl-CoA dehydrogenase, middle domain BG11_3900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG11_3900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG11_3901 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG11_3901 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG11_3901 PF02770 Acyl-CoA dehydrogenase, middle domain BG11_3903 PF05066 HB1, ASXL, restriction endonuclease HTH domain BG11_3904 PF06418 CTP synthase N-terminus BG11_3904 PF00117 Glutamine amidotransferase class-I BG11_3905 PF10740 Domain of unknown function (DUF2529) BG11_3906 PF00072 Response regulator receiver domain BG11_3907 PF01116 Fructose-bisphosphate aldolase class-II BG11_3908 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG11_3909 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BG11_3910 PF07497 Rho termination factor, RNA-binding domain BG11_3910 PF07498 Rho termination factor, N-terminal domain BG11_3910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG11_3911 PF01197 Ribosomal protein L31 BG11_3912 PF00265 Thymidine kinase BG11_3913 PF00472 RF-1 domain BG11_3913 PF03462 PCRF domain BG11_3914 PF17827 PrmC N-terminal domain BG11_3914 PF13847 Methyltransferase domain BG11_3915 PF09551 Stage II sporulation protein R (spore_II_R) BG11_3917 PF01300 Telomere recombination BG11_3917 PF03481 Putative GTP-binding controlling metal-binding BG11_3918 PF02659 Putative manganese efflux pump BG11_392 PF08241 Methyltransferase domain BG11_3920 PF01613 Flavin reductase like domain BG11_3921 PF07681 DoxX BG11_3922 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG11_3923 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG11_3924 PF02502 Ribose/Galactose Isomerase BG11_3925 PF04260 Protein of unknown function (DUF436) BG11_3926 PF00464 Serine hydroxymethyltransferase BG11_3929 PF03899 ATP synthase I chain BG11_3930 PF00119 ATP synthase A chain BG11_3931 PF00137 ATP synthase subunit C BG11_3932 PF00430 ATP synthase B/B' CF(0) BG11_3933 PF00213 ATP synthase delta (OSCP) subunit BG11_3934 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG11_3934 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG11_3934 PF00306 ATP synthase alpha/beta chain, C terminal domain BG11_3935 PF00231 ATP synthase BG11_3936 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG11_3936 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG11_3937 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BG11_3937 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BG11_3940 PF00990 Diguanylate cyclase, GGDEF domain BG11_3940 PF00563 EAL domain BG11_3940 PF03707 Bacterial signalling protein N terminal repeat BG11_3941 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BG11_3942 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BG11_3943 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BG11_3944 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BG11_3945 PF00146 NADH dehydrogenase BG11_3947 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BG11_3948 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BG11_3949 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BG11_3949 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BG11_3949 PF00361 Proton-conducting membrane transporter BG11_3950 PF00361 Proton-conducting membrane transporter BG11_3951 PF00361 Proton-conducting membrane transporter BG11_3952 PF06612 Protein of unknown function (DUF1146) BG11_3954 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG11_3955 PF08486 Stage II sporulation protein BG11_3956 PF00072 Response regulator receiver domain BG11_3956 PF04397 LytTr DNA-binding domain BG11_3957 PF00005 ABC transporter BG11_3959 PF01551 Peptidase family M23 BG11_396 PF01594 AI-2E family transporter BG11_3960 PF14883 Hypothetical glycosyl hydrolase family 13 BG11_3960 PF01522 Polysaccharide deacetylase BG11_3961 PF12116 Stage III sporulation protein D BG11_3963 PF01467 Cytidylyltransferase-like BG11_3964 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BG11_3965 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BG11_3965 PF00535 Glycosyl transferase family 2 BG11_3966 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BG11_3967 PF01061 ABC-2 type transporter BG11_3968 PF08239 Bacterial SH3 domain BG11_3968 PF00005 ABC transporter BG11_3969 PF00535 Glycosyl transferase family 2 BG11_3969 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BG11_397 PF13288 DXP reductoisomerase C-terminal domain BG11_397 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BG11_397 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BG11_3970 PF02350 UDP-N-acetylglucosamine 2-epimerase BG11_3971 PF07977 FabA-like domain BG11_3972 PF03816 Cell envelope-related transcriptional attenuator domain BG11_3973 PF16363 GDP-mannose 4,6 dehydratase BG11_3974 PF00486 Transcriptional regulatory protein, C terminal BG11_3974 PF00072 Response regulator receiver domain BG11_3975 PF00512 His Kinase A (phospho-acceptor) domain BG11_3975 PF00989 PAS fold BG11_3975 PF16736 Single Cache-like BG11_3975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_3978 PF07690 Major Facilitator Superfamily BG11_398 PF00579 tRNA synthetases class I (W and Y) BG11_3980 PF00005 ABC transporter BG11_3981 PF12704 MacB-like periplasmic core domain BG11_3981 PF02687 FtsX-like permease family BG11_3982 PF04893 Yip1 domain BG11_3983 PF04893 Yip1 domain BG11_3984 PF04542 Sigma-70 region 2 BG11_3984 PF04545 Sigma-70, region 4 BG11_3990 PF00271 Helicase conserved C-terminal domain BG11_3990 PF12419 SNF2 Helicase protein BG11_3990 PF00176 SNF2 family N-terminal domain BG11_3991 PF04434 SWIM zinc finger BG11_3996 PF06725 3D domain BG11_3996 PF01476 LysM domain BG11_3997 PF02028 BCCT, betaine/carnitine/choline family transporter BG11_4 PF06133 Control of competence regulator ComK, YlbF/YmcA BG11_400 PF00005 ABC transporter BG11_400 PF02687 FtsX-like permease family BG11_400 PF12704 MacB-like periplasmic core domain BG11_4001 PF07662 Na+ dependent nucleoside transporter C-terminus BG11_4001 PF01773 Na+ dependent nucleoside transporter N-terminus BG11_4002 PF00877 NlpC/P60 family BG11_4002 PF01476 LysM domain BG11_4003 PF01063 Amino-transferase class IV BG11_4004 PF00884 Sulfatase BG11_4006 PF09988 Uncharacterized metal-binding protein (DUF2227) BG11_4008 PF02652 L-lactate permease BG11_4010 PF02652 L-lactate permease BG11_4011 PF01964 Radical SAM ThiC family BG11_4011 PF13667 ThiC-associated domain BG11_4012 PF02040 Arsenical pump membrane protein BG11_4013 PF02322 Cytochrome bd terminal oxidase subunit II BG11_4014 PF01654 Cytochrome bd terminal oxidase subunit I BG11_4017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_4017 PF03466 LysR substrate binding domain BG11_4019 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_402 PF14602 Hexapeptide repeat of succinyl-transferase BG11_402 PF12464 Maltose acetyltransferase BG11_4021 PF00375 Sodium:dicarboxylate symporter family BG11_4022 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG11_4023 PF02378 Phosphotransferase system, EIIC BG11_4024 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG11_4025 PF02675 S-adenosylmethionine decarboxylase BG11_4027 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG11_4028 PF02378 Phosphotransferase system, EIIC BG11_4029 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG11_403 PF07690 Major Facilitator Superfamily BG11_4030 PF11975 Family 4 glycosyl hydrolase C-terminal domain BG11_4030 PF02056 Family 4 glycosyl hydrolase BG11_4031 PF04794 YdjC-like protein BG11_4032 PF02417 Chromate transporter BG11_4034 PF00158 Sigma-54 interaction domain BG11_4034 PF00874 PRD domain BG11_4034 PF03610 PTS system fructose IIA component BG11_4035 PF01522 Polysaccharide deacetylase BG11_4035 PF11738 Protein of unknown function (DUF3298) BG11_4035 PF13739 Deacetylase PdaC BG11_4036 PF00953 Glycosyl transferase family 4 BG11_4037 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG11_4037 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG11_4037 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG11_4038 PF02350 UDP-N-acetylglucosamine 2-epimerase BG11_4039 PF03816 Cell envelope-related transcriptional attenuator domain BG11_404 PF00480 ROK family BG11_4040 PF09186 Domain of unknown function (DUF1949) BG11_4040 PF01205 Uncharacterized protein family UPF0029 BG11_4041 PF02645 Uncharacterised protein, DegV family COG1307 BG11_4042 PF01638 HxlR-like helix-turn-helix BG11_4043 PF00877 NlpC/P60 family BG11_4043 PF01476 LysM domain BG11_4044 PF04851 Type III restriction enzyme, res subunit BG11_4044 PF00271 Helicase conserved C-terminal domain BG11_4046 PF00313 'Cold-shock' DNA-binding domain BG11_4047 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BG11_4047 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BG11_4048 PF01043 SecA preprotein cross-linking domain BG11_4048 PF02810 SEC-C motif BG11_4048 PF07516 SecA Wing and Scaffold domain BG11_4048 PF07517 SecA DEAD-like domain BG11_4049 PF00472 RF-1 domain BG11_4049 PF03462 PCRF domain BG11_405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_4050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG11_4051 PF00005 ABC transporter BG11_4052 PF02687 FtsX-like permease family BG11_4052 PF18075 FtsX extracellular domain BG11_4053 PF01471 Putative peptidoglycan binding domain BG11_4053 PF03572 Peptidase family S41 BG11_4053 PF17820 PDZ domain BG11_4054 PF17820 PDZ domain BG11_4055 PF00005 ABC transporter BG11_4055 PF00664 ABC transporter transmembrane region BG11_4056 PF01906 Putative heavy-metal-binding BG11_4058 PF03358 NADPH-dependent FMN reductase BG11_4059 PF09278 MerR, DNA binding BG11_4059 PF00376 MerR family regulatory protein BG11_4060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_4060 PF03466 LysR substrate binding domain BG11_4061 PF03601 Conserved hypothetical protein 698 BG11_4067 PF13411 MerR HTH family regulatory protein BG11_4067 PF07739 TipAS antibiotic-recognition domain BG11_407 PF00293 NUDIX domain BG11_407 PF13344 Haloacid dehalogenase-like hydrolase BG11_4070 PF00271 Helicase conserved C-terminal domain BG11_4070 PF02151 UvrB/uvrC motif BG11_4070 PF17757 UvrB interaction domain BG11_4070 PF04851 Type III restriction enzyme, res subunit BG11_4070 PF12344 Ultra-violet resistance protein B BG11_4071 PF00005 ABC transporter BG11_4071 PF17760 UvrA interaction domain BG11_4071 PF17755 UvrA DNA-binding domain BG11_4073 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BG11_4074 PF07475 HPr Serine kinase C-terminal domain BG11_4074 PF02603 HPr Serine kinase N terminus BG11_4075 PF01790 Prolipoprotein diacylglyceryl transferase BG11_4076 PF13419 Haloacid dehalogenase-like hydrolase BG11_4077 PF14602 Hexapeptide repeat of succinyl-transferase BG11_4079 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_4081 PF00293 NUDIX domain BG11_4082 PF03668 P-loop ATPase protein family BG11_4083 PF01933 Uncharacterised protein family UPF0052 BG11_4084 PF02650 WhiA C-terminal HTH domain BG11_4084 PF10298 WhiA N-terminal LAGLIDADG-like domain BG11_4084 PF14527 WhiA LAGLIDADG-like domain BG11_4085 PF00381 PTS HPr component phosphorylation site BG11_4086 PF00574 Clp protease BG11_4087 PF04239 Protein of unknown function (DUF421) BG11_4089 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG11_4090 PF07451 Stage V sporulation protein AD (SpoVAD) BG11_4091 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG11_4095 PF00309 Sigma-54 factor, Activator interacting domain (AID) BG11_4095 PF04552 Sigma-54, DNA binding domain BG11_4095 PF04963 Sigma-54 factor, core binding domain BG11_4097 PF04198 Putative sugar-binding domain BG11_4098 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BG11_4098 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BG11_4099 PF00162 Phosphoglycerate kinase BG11_41 PF02583 Metal-sensitive transcriptional repressor BG11_4100 PF00121 Triosephosphate isomerase BG11_4101 PF01676 Metalloenzyme superfamily BG11_4101 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BG11_4102 PF03952 Enolase, N-terminal domain BG11_4102 PF00113 Enolase, C-terminal TIM barrel domain BG11_4103 PF01156 Inosine-uridine preferring nucleoside hydrolase BG11_4104 PF03788 LrgA family BG11_4105 PF04172 LrgB-like family BG11_4106 PF03840 Preprotein translocase SecG subunit BG11_4107 PF12146 Serine aminopeptidase, S33 BG11_4108 PF00575 S1 RNA binding domain BG11_4108 PF08206 Ribonuclease B OB domain BG11_4108 PF17876 Cold shock domain BG11_4108 PF00773 RNB domain BG11_4109 PF01668 SmpB protein BG11_4111 PF00486 Transcriptional regulatory protein, C terminal BG11_4111 PF00072 Response regulator receiver domain BG11_4113 PF01032 FecCD transport family BG11_4114 PF01032 FecCD transport family BG11_4115 PF00005 ABC transporter BG11_4118 PF06146 Phosphate-starvation-inducible E BG11_4119 PF13302 Acetyltransferase (GNAT) domain BG11_412 PF13419 Haloacid dehalogenase-like hydrolase BG11_4122 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BG11_4123 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BG11_4125 PF17202 Single cache domain 3 BG11_4125 PF00672 HAMP domain BG11_4125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_4129 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BG11_4129 PF01565 FAD binding domain BG11_4130 PF00579 tRNA synthetases class I (W and Y) BG11_4130 PF01479 S4 domain BG11_4131 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_4132 PF07849 Protein of unknown function (DUF1641) BG11_4133 PF01638 HxlR-like helix-turn-helix BG11_4134 PF07690 Major Facilitator Superfamily BG11_4135 PF00248 Aldo/keto reductase family BG11_4139 PF13460 NAD(P)H-binding BG11_4140 PF01235 Sodium:alanine symporter family BG11_4141 PF07662 Na+ dependent nucleoside transporter C-terminus BG11_4141 PF01773 Na+ dependent nucleoside transporter N-terminus BG11_4142 PF01773 Na+ dependent nucleoside transporter N-terminus BG11_4142 PF07662 Na+ dependent nucleoside transporter C-terminus BG11_4144 PF00210 Ferritin-like domain BG11_4146 PF03641 Possible lysine decarboxylase BG11_4149 PF00210 Ferritin-like domain BG11_4150 PF01235 Sodium:alanine symporter family BG11_4151 PF02080 TrkA-C domain BG11_4152 PF00999 Sodium/hydrogen exchanger family BG11_4154 PF01047 MarR family BG11_4155 PF17954 Quercetinase C-terminal cupin domain BG11_4155 PF02678 Pirin BG11_4156 PF03413 Peptidase propeptide and YPEB domain BG11_4156 PF07504 Fungalysin/Thermolysin Propeptide Motif BG11_4156 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG11_4156 PF01447 Thermolysin metallopeptidase, catalytic domain BG11_4157 PF01883 Iron-sulfur cluster assembly protein BG11_4158 PF00672 HAMP domain BG11_4158 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_4158 PF02743 Cache domain BG11_4159 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_4159 PF02743 Cache domain BG11_4159 PF00672 HAMP domain BG11_4161 PF08264 Anticodon-binding domain of tRNA BG11_4161 PF09334 tRNA synthetases class I (M) BG11_4163 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4163 PF16736 Single Cache-like BG11_4163 PF00989 PAS fold BG11_4163 PF00512 His Kinase A (phospho-acceptor) domain BG11_4164 PF00486 Transcriptional regulatory protein, C terminal BG11_4164 PF00072 Response regulator receiver domain BG11_4165 PF03734 L,D-transpeptidase catalytic domain BG11_4165 PF17969 L,D-transpeptidase C-terminal domain BG11_4167 PF09335 SNARE associated Golgi protein BG11_417 PF00005 ABC transporter BG11_4175 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_4175 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_4177 PF02096 60Kd inner membrane protein BG11_4179 PF13520 Amino acid permease BG11_4180 PF07690 Major Facilitator Superfamily BG11_4184 PF00672 HAMP domain BG11_4184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_4184 PF02743 Cache domain BG11_4185 PF01910 Thiamine-binding protein BG11_4186 PF10835 Protein of unknown function (DUF2573) BG11_4187 PF01619 Proline dehydrogenase BG11_4188 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_4188 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_4189 PF14115 YuzL-like protein BG11_4190 PF00378 Enoyl-CoA hydratase/isomerase BG11_4190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BG11_4190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BG11_4191 PF00108 Thiolase, N-terminal domain BG11_4191 PF02803 Thiolase, C-terminal domain BG11_4192 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG11_4192 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG11_4192 PF02770 Acyl-CoA dehydrogenase, middle domain BG11_4193 PF00753 Metallo-beta-lactamase superfamily BG11_4194 PF00440 Bacterial regulatory proteins, tetR family BG11_4194 PF13305 Tetracyclin repressor-like, C-terminal domain BG11_4195 PF08671 Anti-repressor SinI BG11_4195 PF01381 Helix-turn-helix BG11_42 PF00403 Heavy-metal-associated domain BG11_4201 PF00056 lactate/malate dehydrogenase, NAD binding domain BG11_4201 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG11_4209 PF03960 ArsC family BG11_421 PF00391 PEP-utilising enzyme, mobile domain BG11_421 PF02887 Pyruvate kinase, alpha/beta domain BG11_421 PF00224 Pyruvate kinase, barrel domain BG11_4210 PF01597 Glycine cleavage H-protein BG11_4211 PF01751 Toprim domain BG11_4212 PF00085 Thioredoxin BG11_4214 PF00005 ABC transporter BG11_4214 PF09383 NIL domain BG11_4215 PF00528 Binding-protein-dependent transport system inner membrane component BG11_4216 PF03180 NLPA lipoprotein BG11_4217 PF03180 NLPA lipoprotein BG11_4218 PF00005 ABC transporter BG11_4219 PF01458 Uncharacterized protein family (UPF0051) BG11_4220 PF00266 Aminotransferase class-V BG11_4221 PF01592 NifU-like N terminal domain BG11_4222 PF01458 Uncharacterized protein family (UPF0051) BG11_4223 PF02872 5'-nucleotidase, C-terminal domain BG11_4224 PF08827 Domain of unknown function (DUF1805) BG11_4226 PF01551 Peptidase family M23 BG11_4227 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BG11_4227 PF04055 Radical SAM superfamily BG11_423 PF00881 Nitroreductase family BG11_4231 PF10086 YhfC intramembrane metalloprotease BG11_4232 PF07739 TipAS antibiotic-recognition domain BG11_4232 PF13411 MerR HTH family regulatory protein BG11_4233 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BG11_4234 PF06265 Protein of unknown function (DUF1027) BG11_4237 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BG11_4238 PF01934 Protein of unknown function DUF86 BG11_424 PF01638 HxlR-like helix-turn-helix BG11_4240 PF13344 Haloacid dehalogenase-like hydrolase BG11_4242 PF02525 Flavodoxin-like fold BG11_4244 PF04608 Phosphatidylglycerophosphatase A BG11_4247 PF01106 NifU-like domain BG11_4248 PF07315 Protein of unknown function (DUF1462) BG11_4252 PF08274 PhnA Zinc-Ribbon BG11_4252 PF03831 PhnA domain BG11_4253 PF03649 Uncharacterised protein family (UPF0014) BG11_4254 PF03412 Peptidase C39 family BG11_4254 PF00664 ABC transporter transmembrane region BG11_4254 PF00005 ABC transporter BG11_4255 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_4256 PF07293 Protein of unknown function (DUF1450) BG11_4257 PF01678 Diaminopimelate epimerase BG11_4258 PF01521 Iron-sulphur cluster biosynthesis BG11_4260 PF04463 Protein of unknown function (DUF523) BG11_4263 PF06445 GyrI-like small molecule binding domain BG11_4265 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_4266 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_4267 PF13344 Haloacid dehalogenase-like hydrolase BG11_4267 PF00293 NUDIX domain BG11_4269 PF06725 3D domain BG11_427 PF13393 Histidyl-tRNA synthetase BG11_427 PF03129 Anticodon binding domain BG11_4270 PF00883 Cytosol aminopeptidase family, catalytic domain BG11_4270 PF02789 Cytosol aminopeptidase family, N-terminal domain BG11_4271 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG11_4271 PF10372 Bacterial membrane-spanning protein N-terminus BG11_4272 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BG11_4272 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BG11_4272 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BG11_4272 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BG11_4273 PF00483 Nucleotidyl transferase BG11_4274 PF02632 BioY family BG11_4276 PF03061 Thioesterase superfamily BG11_4277 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG11_4277 PF03129 Anticodon binding domain BG11_428 PF04073 Aminoacyl-tRNA editing domain BG11_4280 PF03600 Citrate transporter BG11_4281 PF00929 Exonuclease BG11_4282 PF08810 Kinase associated protein B BG11_4285 PF00155 Aminotransferase class I and II BG11_4287 PF00561 alpha/beta hydrolase fold BG11_4287 PF08386 TAP-like protein BG11_4288 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG11_4288 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG11_4289 PF01037 Lrp/AsnC ligand binding domain BG11_429 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_4290 PF00155 Aminotransferase class I and II BG11_4291 PF00575 S1 RNA binding domain BG11_4292 PF04070 Domain of unknown function (DUF378) BG11_4293 PF00342 Phosphoglucose isomerase BG11_4294 PF02254 TrkA-N domain BG11_4294 PF07885 Ion channel BG11_4295 PF08868 YugN-like family BG11_4296 PF02308 MgtC family BG11_43 PF00403 Heavy-metal-associated domain BG11_430 PF00293 NUDIX domain BG11_4304 PF05698 Bacterial trigger factor protein (TF) C-terminus BG11_4304 PF05697 Bacterial trigger factor protein (TF) BG11_431 PF01230 HIT domain BG11_4323 PF08281 Sigma-70, region 4 BG11_4323 PF04542 Sigma-70 region 2 BG11_4325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG11_4325 PF00056 lactate/malate dehydrogenase, NAD binding domain BG11_4327 PF00128 Alpha amylase, catalytic domain BG11_4327 PF02806 Alpha amylase, C-terminal all-beta domain BG11_4327 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG11_4328 PF00483 Nucleotidyl transferase BG11_4329 PF00483 Nucleotidyl transferase BG11_4330 PF08323 Starch synthase catalytic domain BG11_4330 PF00534 Glycosyl transferases group 1 BG11_4331 PF00343 Carbohydrate phosphorylase BG11_4335 PF00313 'Cold-shock' DNA-binding domain BG11_4336 PF01258 Prokaryotic dksA/traR C4-type zinc finger BG11_4337 PF01040 UbiA prenyltransferase family BG11_4338 PF00425 chorismate binding enzyme BG11_4339 PF16582 Middle domain of thiamine pyrophosphate BG11_4339 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG11_4339 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG11_4340 PF00561 alpha/beta hydrolase fold BG11_4341 PF00378 Enoyl-CoA hydratase/isomerase BG11_4342 PF00501 AMP-binding enzyme BG11_4342 PF13193 AMP-binding enzyme C-terminal domain BG11_4343 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG11_4343 PF13378 Enolase C-terminal domain-like BG11_4344 PF00072 Response regulator receiver domain BG11_4344 PF00486 Transcriptional regulatory protein, C terminal BG11_4345 PF00512 His Kinase A (phospho-acceptor) domain BG11_4345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4346 PF02557 D-alanyl-D-alanine carboxypeptidase BG11_4349 PF01979 Amidohydrolase family BG11_4350 PF03841 L-seryl-tRNA selenium transferase BG11_4351 PF07071 KDGP aldolase BG11_4354 PF02447 GntP family permease BG11_4355 PF02447 GntP family permease BG11_4357 PF02687 FtsX-like permease family BG11_4358 PF00005 ABC transporter BG11_4359 PF02687 FtsX-like permease family BG11_436 PF00440 Bacterial regulatory proteins, tetR family BG11_4360 PF02687 FtsX-like permease family BG11_4361 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4362 PF00486 Transcriptional regulatory protein, C terminal BG11_4362 PF00072 Response regulator receiver domain BG11_4363 PF06445 GyrI-like small molecule binding domain BG11_4363 PF12833 Helix-turn-helix domain BG11_4364 PF00005 ABC transporter BG11_4365 PF02687 FtsX-like permease family BG11_4366 PF00398 Ribosomal RNA adenine dimethylase BG11_4367 PF09335 SNARE associated Golgi protein BG11_437 PF07690 Major Facilitator Superfamily BG11_4372 PF00781 Diacylglycerol kinase catalytic domain BG11_4378 PF00486 Transcriptional regulatory protein, C terminal BG11_4378 PF00072 Response regulator receiver domain BG11_4379 PF00672 HAMP domain BG11_4379 PF00512 His Kinase A (phospho-acceptor) domain BG11_4379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4380 PF09515 Thiamine transporter protein (Thia_YuaJ) BG11_4382 PF07664 Ferrous iron transport protein B C terminus BG11_4382 PF17910 FeoB cytosolic helical domain BG11_4382 PF07670 Nucleoside recognition BG11_4382 PF02421 Ferrous iron transport protein B BG11_4387 PF04012 PspA/IM30 family BG11_4392 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_4392 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_4395 PF10676 Spore germination protein gerPA/gerPF BG11_4396 PF02322 Cytochrome bd terminal oxidase subunit II BG11_4397 PF01654 Cytochrome bd terminal oxidase subunit I BG11_4398 PF01809 Putative membrane protein insertion efficiency factor BG11_4399 PF00484 Carbonic anhydrase BG11_44 PF00216 Bacterial DNA-binding protein BG11_440 PF03606 C4-dicarboxylate anaerobic carrier BG11_4400 PF02664 S-Ribosylhomocysteinase (LuxS) BG11_4405 PF00293 NUDIX domain BG11_4407 PF13419 Haloacid dehalogenase-like hydrolase BG11_441 PF03737 Aldolase/RraA BG11_4410 PF00528 Binding-protein-dependent transport system inner membrane component BG11_4411 PF00005 ABC transporter BG11_4415 PF00884 Sulfatase BG11_4416 PF00561 alpha/beta hydrolase fold BG11_4416 PF08386 TAP-like protein BG11_4417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4417 PF08447 PAS fold BG11_4417 PF00989 PAS fold BG11_4417 PF00512 His Kinase A (phospho-acceptor) domain BG11_4418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4418 PF00512 His Kinase A (phospho-acceptor) domain BG11_4418 PF13188 PAS domain BG11_4418 PF13426 PAS domain BG11_4418 PF00989 PAS fold BG11_4419 PF01784 NIF3 (NGG1p interacting factor 3) BG11_4425 PF01293 Phosphoenolpyruvate carboxykinase BG11_4426 PF00438 S-adenosylmethionine synthetase, N-terminal domain BG11_4426 PF02772 S-adenosylmethionine synthetase, central domain BG11_4426 PF02773 S-adenosylmethionine synthetase, C-terminal domain BG11_4429 PF00994 Probable molybdopterin binding domain BG11_4430 PF12804 MobA-like NTP transferase domain BG11_4431 PF13439 Glycosyltransferase Family 4 BG11_4431 PF00534 Glycosyl transferases group 1 BG11_4432 PF01569 PAP2 superfamily BG11_4433 PF00132 Bacterial transferase hexapeptide (six repeats) BG11_4434 PF12146 Serine aminopeptidase, S33 BG11_4435 PF10776 Protein of unknown function (DUF2600) BG11_4438 PF01177 Asp/Glu/Hydantoin racemase BG11_444 PF02361 Cobalt transport protein BG11_4440 PF00005 ABC transporter BG11_4441 PF06962 Putative rRNA methylase BG11_4442 PF04055 Radical SAM superfamily BG11_4442 PF16199 Radical_SAM C-terminal domain BG11_4443 PF10732 Protein of unknown function (DUF2524) BG11_4445 PF04235 Protein of unknown function (DUF418) BG11_4445 PF07786 Protein of unknown function (DUF1624) BG11_4446 PF00005 ABC transporter BG11_4448 PF00589 Phage integrase family BG11_4449 PF02080 TrkA-C domain BG11_445 PF00005 ABC transporter BG11_4450 PF00999 Sodium/hydrogen exchanger family BG11_4451 PF07690 Major Facilitator Superfamily BG11_4452 PF09334 tRNA synthetases class I (M) BG11_4452 PF13603 Leucyl-tRNA synthetase, Domain 2 BG11_4452 PF00133 tRNA synthetases class I (I, L, M and V) BG11_4452 PF08264 Anticodon-binding domain of tRNA BG11_4457 PF03845 Spore germination protein BG11_4458 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_4459 PF00561 alpha/beta hydrolase fold BG11_4461 PF00581 Rhodanese-like domain BG11_4465 PF04055 Radical SAM superfamily BG11_4465 PF06463 Molybdenum Cofactor Synthesis C BG11_4466 PF00899 ThiF family BG11_4467 PF01967 MoaC family BG11_4468 PF00994 Probable molybdopterin binding domain BG11_4468 PF03454 MoeA C-terminal region (domain IV) BG11_4468 PF03453 MoeA N-terminal region (domain I and II) BG11_4469 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BG11_447 PF14256 YwiC-like protein BG11_4470 PF02391 MoaE protein BG11_4473 PF06800 Sugar transport protein BG11_4475 PF02559 CarD-like/TRCF domain BG11_4477 PF10957 Sporulation protein Cse60 BG11_4479 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BG11_4480 PF01022 Bacterial regulatory protein, arsR family BG11_4481 PF07690 Major Facilitator Superfamily BG11_4483 PF14667 Polysaccharide biosynthesis C-terminal domain BG11_4483 PF01943 Polysaccharide biosynthesis protein BG11_4484 PF01479 S4 domain BG11_4484 PF00849 RNA pseudouridylate synthase BG11_4485 PF08220 DeoR-like helix-turn-helix domain BG11_4486 PF01546 Peptidase family M20/M25/M40 BG11_4487 PF02834 LigT like Phosphoesterase BG11_4488 PF17999 Pullulanase N1-terminal domain BG11_4488 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG11_4488 PF00128 Alpha amylase, catalytic domain BG11_4489 PF01636 Phosphotransferase enzyme family BG11_4490 PF14165 YtzH-like protein BG11_4491 PF02390 Putative methyltransferase BG11_4492 PF00753 Metallo-beta-lactamase superfamily BG11_4494 PF05343 M42 glutamyl aminopeptidase BG11_4495 PF01931 Protein of unknown function DUF84 BG11_4496 PF00085 Thioredoxin BG11_4497 PF07285 Protein of unknown function (DUF1444) BG11_4498 PF01588 Putative tRNA binding domain BG11_4498 PF14794 Domain of unknown function (DUF4479) BG11_45 PF01226 Formate/nitrite transporter BG11_4500 PF17854 FtsK alpha domain BG11_4500 PF09397 Ftsk gamma domain BG11_4500 PF01580 FtsK/SpoIIIE family BG11_4502 PF08245 Mur ligase middle domain BG11_4502 PF02875 Mur ligase family, glutamate ligase domain BG11_4502 PF01225 Mur ligase family, catalytic domain BG11_4503 PF13302 Acetyltransferase (GNAT) domain BG11_4507 PF02073 Thermophilic metalloprotease (M29) BG11_4509 PF11009 Protein of unknown function (DUF2847) BG11_451 PF02525 Flavodoxin-like fold BG11_4510 PF07537 CamS sex pheromone cAM373 precursor BG11_4511 PF00356 Bacterial regulatory proteins, lacI family BG11_4516 PF01741 Large-conductance mechanosensitive channel, MscL BG11_4517 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG11_4518 PF12796 Ankyrin repeats (3 copies) BG11_4519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4519 PF00989 PAS fold BG11_4519 PF00512 His Kinase A (phospho-acceptor) domain BG11_4519 PF16736 Single Cache-like BG11_4520 PF00072 Response regulator receiver domain BG11_4520 PF00486 Transcriptional regulatory protein, C terminal BG11_4522 PF00561 alpha/beta hydrolase fold BG11_4523 PF00850 Histone deacetylase domain BG11_4524 PF00571 CBS domain BG11_4525 PF00583 Acetyltransferase (GNAT) family BG11_4526 PF13193 AMP-binding enzyme C-terminal domain BG11_4526 PF00501 AMP-binding enzyme BG11_4528 PF04542 Sigma-70 region 2 BG11_4528 PF08281 Sigma-70, region 4 BG11_453 PF02667 Short chain fatty acid transporter BG11_4530 PF00579 tRNA synthetases class I (W and Y) BG11_4530 PF01479 S4 domain BG11_4533 PF01479 S4 domain BG11_4533 PF00163 Ribosomal protein S4/S9 N-terminal domain BG11_4534 PF01053 Cys/Met metabolism PLP-dependent enzyme BG11_4535 PF13185 GAF domain BG11_4536 PF00440 Bacterial regulatory proteins, tetR family BG11_4537 PF00892 EamA-like transporter family BG11_4538 PF03466 LysR substrate binding domain BG11_4538 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_4539 PF06160 Septation ring formation regulator, EzrA BG11_454 PF17440 Thiol-activated cytolysin beta sandwich domain BG11_454 PF01289 Thiol-activated cytolysin BG11_4540 PF00266 Aminotransferase class-V BG11_4541 PF02568 Thiamine biosynthesis protein (ThiI) BG11_4541 PF02926 THUMP domain BG11_4542 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_4543 PF13193 AMP-binding enzyme C-terminal domain BG11_4543 PF00501 AMP-binding enzyme BG11_4545 PF07969 Amidohydrolase family BG11_4546 PF01513 ATP-NAD kinase BG11_4548 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG11_4549 PF08534 Redoxin BG11_455 PF00440 Bacterial regulatory proteins, tetR family BG11_4550 PF02384 N-6 DNA Methylase BG11_4551 PF00871 Acetokinase family BG11_4554 PF12787 EcsC protein family BG11_4555 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_4555 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_4559 PF00764 Arginosuccinate synthase BG11_456 PF00893 Small Multidrug Resistance protein BG11_4560 PF00206 Lyase BG11_4560 PF14698 Argininosuccinate lyase C-terminal BG11_4564 PF00582 Universal stress protein family BG11_4566 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BG11_4566 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG11_4568 PF01381 Helix-turn-helix BG11_457 PF17314 Family of unknown function (DUF5360) BG11_4570 PF07883 Cupin domain BG11_4573 PF04542 Sigma-70 region 2 BG11_4573 PF08281 Sigma-70, region 4 BG11_4578 PF11518 Protein of unknown function (DUF3221) BG11_4579 PF01321 Creatinase/Prolidase N-terminal domain BG11_4579 PF00557 Metallopeptidase family M24 BG11_4582 PF07085 DRTGG domain BG11_4582 PF00392 Bacterial regulatory proteins, gntR family BG11_4582 PF00571 CBS domain BG11_4582 PF03061 Thioesterase superfamily BG11_4585 PF14007 YtpI-like protein BG11_4586 PF01368 DHH family BG11_4586 PF02272 DHHA1 domain BG11_4588 PF14034 Sporulation protein YtrH BG11_4589 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG11_4589 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG11_4589 PF02811 PHP domain BG11_4589 PF01336 OB-fold nucleic acid binding domain BG11_4589 PF14579 Helix-hairpin-helix motif BG11_459 PF07690 Major Facilitator Superfamily BG11_4590 PF00390 Malic enzyme, N-terminal domain BG11_4590 PF03949 Malic enzyme, NAD binding domain BG11_4591 PF00392 Bacterial regulatory proteins, gntR family BG11_4592 PF01039 Carboxyl transferase domain BG11_4592 PF17848 Acetyl-coA carboxylase zinc finger domain BG11_4593 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BG11_4594 PF00365 Phosphofructokinase BG11_4595 PF00224 Pyruvate kinase, barrel domain BG11_4595 PF02887 Pyruvate kinase, alpha/beta domain BG11_4595 PF00391 PEP-utilising enzyme, mobile domain BG11_4596 PF04186 FxsA cytoplasmic membrane protein BG11_4597 PF01594 AI-2E family transporter BG11_4598 PF04284 Protein of unknown function (DUF441) BG11_4599 PF00285 Citrate synthase, C-terminal domain BG11_46 PF10518 TAT (twin-arginine translocation) pathway signal sequence BG11_46 PF00149 Calcineurin-like phosphoesterase BG11_460 PF01047 MarR family BG11_4600 PF00180 Isocitrate/isopropylmalate dehydrogenase BG11_4601 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG11_4601 PF00056 lactate/malate dehydrogenase, NAD binding domain BG11_4605 PF00072 Response regulator receiver domain BG11_4605 PF00486 Transcriptional regulatory protein, C terminal BG11_4606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4606 PF00989 PAS fold BG11_4606 PF16736 Single Cache-like BG11_4606 PF00512 His Kinase A (phospho-acceptor) domain BG11_4607 PF01367 5'-3' exonuclease, C-terminal SAM fold BG11_4607 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BG11_4607 PF00476 DNA polymerase family A BG11_4608 PF06827 Zinc finger found in FPG and IleRS BG11_4608 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BG11_4608 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BG11_4609 PF02659 Putative manganese efflux pump BG11_461 PF12697 Alpha/beta hydrolase family BG11_4610 PF01121 Dephospho-CoA kinase BG11_4611 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BG11_4611 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BG11_4612 PF02675 S-adenosylmethionine decarboxylase BG11_4613 PF03477 ATP cone domain BG11_4614 PF07261 Replication initiation and membrane attachment BG11_4615 PF01695 IstB-like ATP binding protein BG11_4615 PF07319 Primosomal protein DnaI N-terminus BG11_4616 PF08812 YtxC-like family BG11_4617 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG11_4617 PF02824 TGS domain BG11_4617 PF03129 Anticodon binding domain BG11_4617 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG11_4618 PF05198 Translation initiation factor IF-3, N-terminal domain BG11_4618 PF00707 Translation initiation factor IF-3, C-terminal domain BG11_4619 PF01632 Ribosomal protein L35 BG11_462 PF07690 Major Facilitator Superfamily BG11_4620 PF00453 Ribosomal protein L20 BG11_4622 PF05343 M42 glutamyl aminopeptidase BG11_4623 PF16859 Tetracyclin repressor-like, C-terminal domain BG11_4623 PF00440 Bacterial regulatory proteins, tetR family BG11_4625 PF07690 Major Facilitator Superfamily BG11_463 PF14044 NETI protein BG11_4630 PF01966 HD domain BG11_4631 PF14098 Small, acid-soluble spore protein I BG11_4632 PF08032 RNA 2'-O ribose methyltransferase substrate binding BG11_4632 PF00588 SpoU rRNA Methylase family BG11_4633 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BG11_4633 PF01409 tRNA synthetases class II core domain (F) BG11_4634 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BG11_4634 PF01588 Putative tRNA binding domain BG11_4634 PF03483 B3/4 domain BG11_4634 PF03147 Ferredoxin-fold anticodon binding domain BG11_4634 PF03484 tRNA synthetase B5 domain BG11_4635 PF01336 OB-fold nucleic acid binding domain BG11_4635 PF00152 tRNA synthetases class II (D, K and N) BG11_4639 PF01351 Ribonuclease HII BG11_4639 PF11858 Domain of unknown function (DUF3378) BG11_4640 PF05164 Cell division protein ZapA BG11_4641 PF02674 Colicin V production protein BG11_4642 PF14791 DNA polymerase beta thumb BG11_4642 PF14716 Helix-hairpin-helix domain BG11_4642 PF02811 PHP domain BG11_4643 PF01713 Smr domain BG11_4643 PF00488 MutS domain V BG11_4645 PF01479 S4 domain BG11_4645 PF00849 RNA pseudouridylate synthase BG11_4646 PF05525 Branched-chain amino acid transport protein BG11_4647 PF05031 Iron Transport-associated domain BG11_4649 PF05031 Iron Transport-associated domain BG11_4650 PF01497 Periplasmic binding protein BG11_4651 PF01032 FecCD transport family BG11_4652 PF00005 ABC transporter BG11_4653 PF04203 Sortase domain BG11_4654 PF03992 Antibiotic biosynthesis monooxygenase BG11_4656 PF17785 PUA-like domain BG11_4656 PF10672 S-adenosylmethionine-dependent methyltransferase BG11_4657 PF09962 Uncharacterized conserved protein (DUF2196) BG11_4659 PF00486 Transcriptional regulatory protein, C terminal BG11_4659 PF00072 Response regulator receiver domain BG11_4660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4660 PF00512 His Kinase A (phospho-acceptor) domain BG11_4661 PF00005 ABC transporter BG11_4666 PF05163 DinB family BG11_4667 PF01032 FecCD transport family BG11_4668 PF01497 Periplasmic binding protein BG11_4670 PF13193 AMP-binding enzyme C-terminal domain BG11_4670 PF00501 AMP-binding enzyme BG11_4671 PF00440 Bacterial regulatory proteins, tetR family BG11_4671 PF08359 YsiA-like protein, C-terminal region BG11_4672 PF00378 Enoyl-CoA hydratase/isomerase BG11_4673 PF01012 Electron transfer flavoprotein domain BG11_4674 PF00766 Electron transfer flavoprotein FAD-binding domain BG11_4674 PF01012 Electron transfer flavoprotein domain BG11_4675 PF00085 Thioredoxin BG11_4676 PF08459 UvrC Helix-hairpin-helix N-terminal BG11_4676 PF02151 UvrB/uvrC motif BG11_4676 PF01541 GIY-YIG catalytic domain BG11_4677 PF10702 Protein of unknown function (DUF2507) BG11_4678 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BG11_4679 PF00890 FAD binding domain BG11_4679 PF02910 Fumarate reductase flavoprotein C-term BG11_4680 PF13183 4Fe-4S dicluster domain BG11_4680 PF13085 2Fe-2S iron-sulfur cluster binding domain BG11_4681 PF03061 Thioesterase superfamily BG11_4682 PF02557 D-alanyl-D-alanine carboxypeptidase BG11_4683 PF01618 MotA/TolQ/ExbB proton channel family BG11_4684 PF00691 OmpA family BG11_4684 PF13677 Membrane MotB of proton-channel complex MotA/MotB BG11_4685 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BG11_4686 PF13732 Domain of unknown function (DUF4162) BG11_4686 PF00005 ABC transporter BG11_4688 PF02082 Transcriptional regulator BG11_4689 PF00230 Major intrinsic protein BG11_4690 PF13536 Putative multidrug resistance efflux transporter BG11_4691 PF01381 Helix-turn-helix BG11_4691 PF07883 Cupin domain BG11_4692 PF04024 PspC domain BG11_4694 PF00072 Response regulator receiver domain BG11_4694 PF04397 LytTr DNA-binding domain BG11_4695 PF06580 Histidine kinase BG11_4695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4695 PF07694 5TMR of 5TMR-LYT BG11_4696 PF00005 ABC transporter BG11_4696 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_4697 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG11_4697 PF00005 ABC transporter BG11_4698 PF00528 Binding-protein-dependent transport system inner membrane component BG11_470 PF01471 Putative peptidoglycan binding domain BG11_470 PF01476 LysM domain BG11_470 PF01510 N-acetylmuramoyl-L-alanine amidase BG11_4700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_4701 PF07969 Amidohydrolase family BG11_4702 PF07969 Amidohydrolase family BG11_4704 PF00860 Permease family BG11_4705 PF00196 Bacterial regulatory proteins, luxR family BG11_4710 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BG11_4710 PF17768 RecJ OB domain BG11_4710 PF02272 DHHA1 domain BG11_4710 PF01368 DHH family BG11_4715 PF01758 Sodium Bile acid symporter family BG11_4718 PF01022 Bacterial regulatory protein, arsR family BG11_4719 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG11_4720 PF06953 Arsenical resistance operon trans-acting repressor ArsD BG11_4721 PF02374 Anion-transporting ATPase BG11_4723 PF04542 Sigma-70 region 2 BG11_4723 PF08281 Sigma-70, region 4 BG11_4724 PF13847 Methyltransferase domain BG11_473 PF01804 Penicillin amidase BG11_4732 PF01965 DJ-1/PfpI family BG11_4733 PF00440 Bacterial regulatory proteins, tetR family BG11_4735 PF07690 Major Facilitator Superfamily BG11_4736 PF01177 Asp/Glu/Hydantoin racemase BG11_4737 PF10646 Sporulation and spore germination BG11_4738 PF03725 3' exoribonuclease family, domain 2 BG11_4738 PF01138 3' exoribonuclease family, domain 1 BG11_4739 PF01725 Ham1 family BG11_474 PF01497 Periplasmic binding protein BG11_474 PF12833 Helix-turn-helix domain BG11_4740 PF12850 Calcineurin-like phosphoesterase superfamily domain BG11_4744 PF08000 Bacterial PH domain BG11_4744 PF11724 YvbH-like oligomerisation region BG11_4749 PF05698 Bacterial trigger factor protein (TF) C-terminus BG11_4749 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BG11_4749 PF05697 Bacterial trigger factor protein (TF) BG11_475 PF07883 Cupin domain BG11_4750 PF10431 C-terminal, D2-small domain, of ClpB protein BG11_4750 PF06689 ClpX C4-type zinc finger BG11_4750 PF07724 AAA domain (Cdc48 subfamily) BG11_4751 PF00004 ATPase family associated with various cellular activities (AAA) BG11_4751 PF05362 Lon protease (S16) C-terminal proteolytic domain BG11_4752 PF02190 ATP-dependent protease La (LON) substrate-binding domain BG11_4752 PF05362 Lon protease (S16) C-terminal proteolytic domain BG11_4752 PF00004 ATPase family associated with various cellular activities (AAA) BG11_4753 PF01926 50S ribosome-binding GTPase BG11_4754 PF02566 OsmC-like protein BG11_4755 PF01047 MarR family BG11_4756 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BG11_4756 PF01488 Shikimate / quinate 5-dehydrogenase BG11_4756 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BG11_4757 PF01578 Cytochrome C assembly protein BG11_4758 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BG11_4758 PF03900 Porphobilinogen deaminase, C-terminal domain BG11_4759 PF02602 Uroporphyrinogen-III synthase HemD BG11_4760 PF00490 Delta-aminolevulinic acid dehydratase BG11_4761 PF00202 Aminotransferase class-III BG11_4762 PF01476 LysM domain BG11_4764 PF08264 Anticodon-binding domain of tRNA BG11_4764 PF00133 tRNA synthetases class I (I, L, M and V) BG11_4764 PF10458 Valyl tRNA synthetase tRNA binding arm BG11_4765 PF02875 Mur ligase family, glutamate ligase domain BG11_4765 PF08245 Mur ligase middle domain BG11_4767 PF02545 Maf-like protein BG11_4768 PF04002 RadC-like JAB domain BG11_4770 PF04085 rod shape-determining protein MreC BG11_4772 PF03775 Septum formation inhibitor MinC, C-terminal domain BG11_4773 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BG11_4774 PF01551 Peptidase family M23 BG11_4775 PF02163 Peptidase family M50 BG11_4776 PF00575 S1 RNA binding domain BG11_4776 PF10150 Ribonuclease E/G family BG11_4777 PF00829 Ribosomal prokaryotic L21 protein BG11_4778 PF04327 Cysteine protease Prp BG11_4779 PF01016 Ribosomal L27 protein BG11_478 PF08281 Sigma-70, region 4 BG11_478 PF04542 Sigma-70 region 2 BG11_4780 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG11_4780 PF14682 Sporulation initiation phospho-transferase B, C-terminal BG11_4781 PF01926 50S ribosome-binding GTPase BG11_4781 PF01018 GTP1/OBG BG11_4781 PF09269 Domain of unknown function (DUF1967) BG11_4782 PF00072 Response regulator receiver domain BG11_4782 PF00486 Transcriptional regulatory protein, C terminal BG11_4783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_4784 PF00005 ABC transporter BG11_4785 PF02687 FtsX-like permease family BG11_4786 PF02687 FtsX-like permease family BG11_4787 PF00800 Prephenate dehydratase BG11_4787 PF01842 ACT domain BG11_4788 PF03473 MOSC domain BG11_4788 PF03475 3-alpha domain BG11_4789 PF02829 3H domain BG11_4789 PF08279 HTH domain BG11_4790 PF00266 Aminotransferase class-V BG11_4791 PF00890 FAD binding domain BG11_4791 PF02910 Fumarate reductase flavoprotein C-term BG11_4792 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BG11_4792 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BG11_4793 PF02445 Quinolinate synthetase A protein BG11_4794 PF01476 LysM domain BG11_4798 PF01497 Periplasmic binding protein BG11_4799 PF07499 RuvA, C-terminal domain BG11_4799 PF01330 RuvA N terminal domain BG11_48 PF00041 Fibronectin type III domain BG11_48 PF00704 Glycosyl hydrolases family 18 BG11_4800 PF05496 Holliday junction DNA helicase RuvB P-loop domain BG11_4800 PF17864 RuvB AAA lid domain BG11_4800 PF05491 RuvB C-terminal winged helix domain BG11_4801 PF11146 Protein of unknown function (DUF2905) BG11_4802 PF02547 Queuosine biosynthesis protein BG11_4803 PF01702 Queuine tRNA-ribosyltransferase BG11_4804 PF02699 Preprotein translocase subunit BG11_4806 PF04239 Protein of unknown function (DUF421) BG11_4807 PF01943 Polysaccharide biosynthesis protein BG11_4807 PF14667 Polysaccharide biosynthesis C-terminal domain BG11_4808 PF13797 Post-transcriptional regulator BG11_4809 PF07549 SecD/SecF GG Motif BG11_4809 PF02355 Protein export membrane protein BG11_481 PF00266 Aminotransferase class-V BG11_4810 PF01545 Cation efflux family BG11_4810 PF16916 Dimerisation domain of Zinc Transporter BG11_4811 PF01368 DHH family BG11_4811 PF02272 DHHA1 domain BG11_4811 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BG11_4811 PF17768 RecJ OB domain BG11_4812 PF00156 Phosphoribosyl transferase domain BG11_4813 PF13291 ACT domain BG11_4813 PF04607 Region found in RelA / SpoT proteins BG11_4813 PF02824 TGS domain BG11_4814 PF02580 D-Tyr-tRNA(Tyr) deacylase BG11_4817 PF03129 Anticodon binding domain BG11_4817 PF13393 Histidyl-tRNA synthetase BG11_4818 PF00152 tRNA synthetases class II (D, K and N) BG11_4818 PF01336 OB-fold nucleic acid binding domain BG11_4818 PF02938 GAD domain BG11_4819 PF00899 ThiF family BG11_482 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG11_482 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG11_482 PF01842 ACT domain BG11_4821 PF05496 Holliday junction DNA helicase RuvB P-loop domain BG11_4821 PF12002 MgsA AAA+ ATPase C terminal BG11_4821 PF16193 AAA C-terminal domain BG11_4822 PF02082 Transcriptional regulator BG11_4823 PF00266 Aminotransferase class-V BG11_4826 PF13538 UvrD-like helicase C-terminal domain BG11_4826 PF14490 Helix-hairpin-helix containing domain BG11_4826 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BG11_4830 PF01594 AI-2E family transporter BG11_4832 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG11_4832 PF01411 tRNA synthetases class II (A) BG11_4832 PF02272 DHHA1 domain BG11_4833 PF06135 IreB regulatory phosphoprotein BG11_4834 PF03652 Holliday junction resolvase BG11_4835 PF06949 Protein of unknown function (DUF1292) BG11_4836 PF02618 YceG-like family BG11_4840 PF00485 Phosphoribulokinase / Uridine kinase family BG11_4841 PF01272 Transcription elongation factor, GreA/GreB, C-term BG11_4841 PF03449 Transcription elongation factor, N-terminal BG11_4842 PF00905 Penicillin binding protein transpeptidase domain BG11_4842 PF03717 Penicillin-binding Protein dimerisation domain BG11_4845 PF08241 Methyltransferase domain BG11_4846 PF01048 Phosphorylase superfamily BG11_4847 PF00291 Pyridoxal-phosphate dependent enzyme BG11_4848 PF01053 Cys/Met metabolism PLP-dependent enzyme BG11_4849 PF00171 Aldehyde dehydrogenase family BG11_4849 PF00465 Iron-containing alcohol dehydrogenase BG11_485 PF13520 Amino acid permease BG11_4850 PF14143 YrhC-like protein BG11_4851 PF01497 Periplasmic binding protein BG11_4852 PF01032 FecCD transport family BG11_4853 PF00005 ABC transporter BG11_4859 PF07681 DoxX BG11_486 PF01037 Lrp/AsnC ligand binding domain BG11_4860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_4862 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BG11_4863 PF13860 FlgD Ig-like domain BG11_4863 PF02225 PA domain BG11_4863 PF00082 Subtilase family BG11_4863 PF05922 Peptidase inhibitor I9 BG11_487 PF00857 Isochorismatase family BG11_4870 PF00561 alpha/beta hydrolase fold BG11_4870 PF08386 TAP-like protein BG11_4872 PF00245 Alkaline phosphatase BG11_4874 PF04607 Region found in RelA / SpoT proteins BG11_4875 PF00881 Nitroreductase family BG11_4876 PF00471 Ribosomal protein L33 BG11_4877 PF16244 Domain of unknown function (DUF4901) BG11_4879 PF04545 Sigma-70, region 4 BG11_4879 PF04542 Sigma-70 region 2 BG11_488 PF00586 AIR synthase related protein, N-terminal domain BG11_488 PF02769 AIR synthase related protein, C-terminal domain BG11_4880 PF02666 Phosphatidylserine decarboxylase BG11_4883 PF01926 50S ribosome-binding GTPase BG11_4884 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BG11_4884 PF08501 Shikimate dehydrogenase substrate binding domain BG11_4884 PF01488 Shikimate / quinate 5-dehydrogenase BG11_4885 PF01985 CRS1 / YhbY (CRM) domain BG11_4886 PF01467 Cytidylyltransferase-like BG11_4887 PF01966 HD domain BG11_4889 PF13649 Methyltransferase domain BG11_489 PF01300 Telomere recombination BG11_489 PF07503 HypF finger BG11_489 PF00708 Acylphosphatase BG11_489 PF17788 HypF Kae1-like domain BG11_4890 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG11_4890 PF03807 NADP oxidoreductase coenzyme F420-dependent BG11_4891 PF10531 SLBB domain BG11_4892 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG11_4893 PF03772 Competence protein BG11_4893 PF13567 Domain of unknown function (DUF4131) BG11_4893 PF00753 Metallo-beta-lactamase superfamily BG11_4894 PF14141 YqzM-like protein BG11_4895 PF06144 DNA polymerase III, delta subunit BG11_4896 PF01649 Ribosomal protein S20 BG11_4897 PF03418 Germination protease BG11_4899 PF00679 Elongation factor G C-terminus BG11_4899 PF06421 GTP-binding protein LepA C-terminus BG11_4899 PF00009 Elongation factor Tu GTP binding domain BG11_4899 PF03144 Elongation factor Tu domain 2 BG11_49 PF00324 Amino acid permease BG11_490 PF00202 Aminotransferase class-III BG11_4900 PF01638 HxlR-like helix-turn-helix BG11_4901 PF06969 HemN C-terminal domain BG11_4901 PF04055 Radical SAM superfamily BG11_4902 PF01628 HrcA protein C terminal domain BG11_4903 PF01025 GrpE BG11_4904 PF00012 Hsp70 protein BG11_4905 PF00226 DnaJ domain BG11_4905 PF01556 DnaJ C terminal domain BG11_4905 PF00684 DnaJ central domain BG11_4907 PF04452 RNA methyltransferase BG11_4908 PF04055 Radical SAM superfamily BG11_4908 PF00919 Uncharacterized protein family UPF0004 BG11_4908 PF01938 TRAM domain BG11_4909 PF01165 Ribosomal protein S21 BG11_491 PF01842 ACT domain BG11_491 PF03315 Serine dehydratase beta chain BG11_4910 PF09424 Yqey-like protein BG11_4911 PF07873 YabP family BG11_4912 PF06898 Putative stage IV sporulation protein YqfD BG11_4913 PF02562 PhoH-like protein BG11_4914 PF01966 HD domain BG11_4914 PF07698 7TM receptor with intracellular HD hydrolase BG11_4914 PF07697 7TM-HD extracellular BG11_4915 PF02130 Uncharacterized protein family UPF0054 BG11_4916 PF01219 Prokaryotic diacylglycerol kinase BG11_4917 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG11_4918 PF01926 50S ribosome-binding GTPase BG11_4918 PF07650 KH domain BG11_492 PF03313 Serine dehydratase alpha chain BG11_4920 PF11967 Recombination protein O N terminal BG11_4920 PF02565 Recombination protein O C terminal BG11_4921 PF08279 HTH domain BG11_4921 PF00571 CBS domain BG11_4922 PF03618 Kinase/pyrophosphorylase BG11_4923 PF10410 DnaB-helicase binding domain of primase BG11_4923 PF08275 DNA primase catalytic core, N-terminal domain BG11_4923 PF01807 CHC2 zinc finger BG11_4924 PF04539 Sigma-70 region 3 BG11_4924 PF04545 Sigma-70, region 4 BG11_4924 PF00140 Sigma-70 factor, region 1.2 BG11_4924 PF04542 Sigma-70 region 2 BG11_4924 PF03979 Sigma-70 factor, region 1.1 BG11_4925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG11_4926 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BG11_4927 PF01784 NIF3 (NGG1p interacting factor 3) BG11_4928 PF02401 LytB protein BG11_4930 PF00270 DEAD/DEAH box helicase BG11_4930 PF00271 Helicase conserved C-terminal domain BG11_4931 PF01261 Xylose isomerase-like TIM barrel BG11_4932 PF11116 Protein of unknown function (DUF2624) BG11_4933 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_4933 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_4934 PF00005 ABC transporter BG11_4935 PF00950 ABC 3 transport family BG11_4936 PF01475 Ferric uptake regulator family BG11_4937 PF04551 GcpE protein BG11_4941 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG11_4941 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG11_4942 PF07690 Major Facilitator Superfamily BG11_4944 PF12849 PBP superfamily domain BG11_4945 PF00528 Binding-protein-dependent transport system inner membrane component BG11_4946 PF00528 Binding-protein-dependent transport system inner membrane component BG11_4947 PF00005 ABC transporter BG11_4948 PF01895 PhoU domain BG11_4949 PF00483 Nucleotidyl transferase BG11_495 PF13302 Acetyltransferase (GNAT) domain BG11_4950 PF00471 Ribosomal protein L33 BG11_4951 PF01812 5-formyltetrahydrofolate cyclo-ligase family BG11_4952 PF06014 Bacterial protein of unknown function (DUF910) BG11_4953 PF00480 ROK family BG11_4954 PF10958 Protein of unknown function (DUF2759) BG11_4955 PF00753 Metallo-beta-lactamase superfamily BG11_4957 PF01022 Bacterial regulatory protein, arsR family BG11_4959 PF01053 Cys/Met metabolism PLP-dependent enzyme BG11_496 PF02743 Cache domain BG11_496 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG11_496 PF00672 HAMP domain BG11_4960 PF01053 Cys/Met metabolism PLP-dependent enzyme BG11_4961 PF02219 Methylenetetrahydrofolate reductase BG11_4961 PF02574 Homocysteine S-methyltransferase BG11_4962 PF02574 Homocysteine S-methyltransferase BG11_4962 PF02310 B12 binding domain BG11_4962 PF00809 Pterin binding enzyme BG11_4962 PF02965 Vitamin B12 dependent methionine synthase, activation domain BG11_4962 PF02607 B12 binding domain BG11_4963 PF04101 Glycosyltransferase family 28 C-terminal domain BG11_4963 PF03033 Glycosyltransferase family 28 N-terminal domain BG11_4969 PF00375 Sodium:dicarboxylate symporter family BG11_4970 PF11117 Protein of unknown function (DUF2626) BG11_4972 PF00437 Type II/IV secretion system protein BG11_499 PF11798 IMS family HHH motif BG11_499 PF11799 impB/mucB/samB family C-terminal domain BG11_499 PF00817 impB/mucB/samB family BG11_4996 PF00437 Type II/IV secretion system protein BG11_4997 PF00482 Type II secretion system (T2SS), protein F BG11_4999 PF07963 Prokaryotic N-terminal methylation motif BG11_5 PF10628 Outer spore coat protein E (CotE) BG11_5004 PF01202 Shikimate kinase BG11_5005 PF14038 YqzE-like protein BG11_5009 PF11079 Bacterial protein YqhG of unknown function BG11_5010 PF00176 SNF2 family N-terminal domain BG11_5010 PF00271 Helicase conserved C-terminal domain BG11_5011 PF01571 Aminomethyltransferase folate-binding domain BG11_5011 PF08669 Glycine cleavage T-protein C-terminal barrel domain BG11_5012 PF02347 Glycine cleavage system P-protein BG11_5013 PF02347 Glycine cleavage system P-protein BG11_5016 PF00392 Bacterial regulatory proteins, gntR family BG11_5017 PF00005 ABC transporter BG11_5024 PF00893 Small Multidrug Resistance protein BG11_5025 PF00893 Small Multidrug Resistance protein BG11_5027 PF00356 Bacterial regulatory proteins, lacI family BG11_5027 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG11_5028 PF00581 Rhodanese-like domain BG11_5029 PF03099 Biotin/lipoate A/B protein ligase family BG11_503 PF18801 response regulator aspartate phosphatase H, N terminal BG11_5032 PF01325 Iron dependent repressor, N-terminal DNA binding domain BG11_5032 PF02742 Iron dependent repressor, metal binding and dimerisation domain BG11_5034 PF13419 Haloacid dehalogenase-like hydrolase BG11_5035 PF07136 Protein of unknown function (DUF1385) BG11_5036 PF11085 Conserved membrane protein YqhR BG11_5037 PF01220 Dehydroquinase class II BG11_5038 PF01321 Creatinase/Prolidase N-terminal domain BG11_5038 PF00557 Metallopeptidase family M24 BG11_5039 PF08207 Elongation factor P (EF-P) KOW-like domain BG11_5039 PF09285 Elongation factor P, C-terminal BG11_5039 PF01132 Elongation factor P (EF-P) OB domain BG11_504 PF00356 Bacterial regulatory proteins, lacI family BG11_5044 PF09548 Stage III sporulation protein AB (spore_III_AB) BG11_5045 PF06686 Stage III sporulation protein AC/AD protein family BG11_5046 PF06686 Stage III sporulation protein AC/AD protein family BG11_5047 PF09546 Stage III sporulation protein AE (spore_III_AE) BG11_5048 PF09581 Stage III sporulation protein AF (Spore_III_AF) BG11_505 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BG11_5050 PF12685 SpoIIIAH-like protein BG11_5052 PF00364 Biotin-requiring enzyme BG11_5053 PF00289 Biotin carboxylase, N-terminal domain BG11_5053 PF02785 Biotin carboxylase C-terminal domain BG11_5053 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG11_5054 PF03780 Asp23 family, cell envelope-related function BG11_5055 PF01029 NusB family BG11_5056 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BG11_5056 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BG11_5057 PF02601 Exonuclease VII, large subunit BG11_5057 PF13742 OB-fold nucleic acid binding domain BG11_5058 PF02609 Exonuclease VII small subunit BG11_5059 PF00348 Polyprenyl synthetase BG11_506 PF05116 Sucrose-6F-phosphate phosphohydrolase BG11_5060 PF02779 Transketolase, pyrimidine binding domain BG11_5060 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BG11_5060 PF02780 Transketolase, C-terminal domain BG11_5061 PF01479 S4 domain BG11_5061 PF01728 FtsJ-like methyltransferase BG11_5062 PF02863 Arginine repressor, C-terminal domain BG11_5062 PF01316 Arginine repressor, DNA binding domain BG11_5063 PF13476 AAA domain BG11_5064 PF17820 PDZ domain BG11_5064 PF05580 SpoIVB peptidase S55 BG11_5065 PF00072 Response regulator receiver domain BG11_5065 PF08769 Sporulation initiation factor Spo0A C terminal BG11_5067 PF14174 YycC-like protein BG11_5068 PF03009 Glycerophosphoryl diester phosphodiesterase family BG11_507 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG11_507 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG11_5070 PF02954 Bacterial regulatory protein, Fis family BG11_5070 PF00158 Sigma-54 interaction domain BG11_5070 PF00989 PAS fold BG11_5071 PF01515 Phosphate acetyl/butaryl transferase BG11_5072 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BG11_5072 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BG11_5073 PF00871 Acetokinase family BG11_5074 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_5074 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG11_5075 PF00676 Dehydrogenase E1 component BG11_5076 PF02779 Transketolase, pyrimidine binding domain BG11_5076 PF02780 Transketolase, C-terminal domain BG11_5077 PF00364 Biotin-requiring enzyme BG11_5077 PF02817 e3 binding domain BG11_5077 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG11_5078 PF01098 Cell cycle protein BG11_5079 PF00293 NUDIX domain BG11_5079 PF09297 NADH pyrophosphatase zinc ribbon domain BG11_508 PF07690 Major Facilitator Superfamily BG11_5080 PF11208 Protein of unknown function (DUF2992) BG11_5081 PF06491 Disulphide isomerase BG11_5082 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG11_5083 PF00528 Binding-protein-dependent transport system inner membrane component BG11_5084 PF00005 ABC transporter BG11_5085 PF06081 Aromatic acid exporter family member 1 BG11_5085 PF11728 Putative aromatic acid exporter C-terminal domain BG11_5086 PF03734 L,D-transpeptidase catalytic domain BG11_5088 PF13302 Acetyltransferase (GNAT) domain BG11_5089 PF07687 Peptidase dimerisation domain BG11_5089 PF01546 Peptidase family M20/M25/M40 BG11_5091 PF11799 impB/mucB/samB family C-terminal domain BG11_5091 PF11798 IMS family HHH motif BG11_5091 PF00817 impB/mucB/samB family BG11_5093 PF00753 Metallo-beta-lactamase superfamily BG11_5093 PF12706 Beta-lactamase superfamily domain BG11_5094 PF01842 ACT domain BG11_5094 PF03315 Serine dehydratase beta chain BG11_5095 PF03313 Serine dehydratase alpha chain BG11_5096 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG11_5096 PF03807 NADP oxidoreductase coenzyme F420-dependent BG11_5097 PF00753 Metallo-beta-lactamase superfamily BG11_5098 PF00106 short chain dehydrogenase BG11_5100 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG11_5100 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG11_5101 PF01960 ArgJ family BG11_5102 PF00696 Amino acid kinase family BG11_5103 PF00202 Aminotransferase class-III BG11_5104 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BG11_5104 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BG11_5107 PF01037 Lrp/AsnC ligand binding domain BG11_5107 PF13404 AsnC-type helix-turn-helix domain BG11_5109 PF02872 5'-nucleotidase, C-terminal domain BG11_5109 PF00149 Calcineurin-like phosphoesterase BG11_5112 PF00202 Aminotransferase class-III BG11_5114 PF00155 Aminotransferase class I and II BG11_5115 PF08241 Methyltransferase domain BG11_5115 PF12697 Alpha/beta hydrolase family BG11_5116 PF13847 Methyltransferase domain BG11_5117 PF04055 Radical SAM superfamily BG11_5117 PF06968 Biotin and Thiamin Synthesis associated domain BG11_5119 PF00885 6,7-dimethyl-8-ribityllumazine synthase BG11_512 PF17676 LD-carboxypeptidase C-terminal domain BG11_512 PF02016 LD-carboxypeptidase N-terminal domain BG11_5120 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BG11_5120 PF00925 GTP cyclohydrolase II BG11_5121 PF00677 Lumazine binding domain BG11_5122 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG11_5122 PF01872 RibD C-terminal domain BG11_5124 PF10827 Protein of unknown function (DUF2552) BG11_5125 PF12146 Serine aminopeptidase, S33 BG11_5126 PF00583 Acetyltransferase (GNAT) family BG11_5127 PF00356 Bacterial regulatory proteins, lacI family BG11_5128 PF13726 Na+-H+ antiporter family BG11_5128 PF03553 Na+/H+ antiporter family BG11_5129 PF12146 Serine aminopeptidase, S33 BG11_5131 PF00149 Calcineurin-like phosphoesterase BG11_5131 PF00565 Staphylococcal nuclease homologue BG11_5131 PF00746 LPXTG cell wall anchor motif BG11_5131 PF02872 5'-nucleotidase, C-terminal domain BG11_5133 PF13673 Acetyltransferase (GNAT) domain BG11_5133 PF04229 GrpB protein BG11_5134 PF00248 Aldo/keto reductase family BG11_5135 PF00248 Aldo/keto reductase family BG11_5136 PF13072 Mother cell inhibitor of FtsZ BG11_5137 PF00293 NUDIX domain BG11_5139 PF01944 Stage II sporulation protein M BG11_514 PF03466 LysR substrate binding domain BG11_514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_5140 PF01475 Ferric uptake regulator family BG11_5141 PF14004 Protein of unknown function (DUF4227) BG11_5142 PF00589 Phage integrase family BG11_5142 PF02899 Phage integrase, N-terminal SAM-like domain BG11_5144 PF01676 Metalloenzyme superfamily BG11_5145 PF01048 Phosphorylase superfamily BG11_5146 PF02885 Glycosyl transferase family, helical bundle domain BG11_5146 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BG11_5146 PF00591 Glycosyl transferase family, a/b domain BG11_5147 PF01544 CorA-like Mg2+ transporter protein BG11_5148 PF00860 Permease family BG11_515 PF02754 Cysteine-rich domain BG11_5150 PF01047 MarR family BG11_5153 PF00005 ABC transporter BG11_5154 PF00392 Bacterial regulatory proteins, gntR family BG11_5155 PF07943 Penicillin-binding protein 5, C-terminal domain BG11_5155 PF00768 D-alanyl-D-alanine carboxypeptidase BG11_5156 PF01740 STAS domain BG11_5157 PF13581 Histidine kinase-like ATPase domain BG11_5158 PF04542 Sigma-70 region 2 BG11_5158 PF04545 Sigma-70, region 4 BG11_5158 PF04539 Sigma-70 region 3 BG11_5159 PF00209 Sodium:neurotransmitter symporter family BG11_516 PF02589 LUD domain BG11_516 PF13183 4Fe-4S dicluster domain BG11_516 PF11870 Domain of unknown function (DUF3390) BG11_5161 PF12164 Stage V sporulation protein AA BG11_5162 PF13782 Stage V sporulation protein AB BG11_5163 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG11_5164 PF07451 Stage V sporulation protein AD (SpoVAD) BG11_5165 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG11_5166 PF14097 Stage V sporulation protein AE1 BG11_5167 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_5169 PF06207 Protein of unknown function (DUF1002) BG11_517 PF02589 LUD domain BG11_5170 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BG11_5171 PF00583 Acetyltransferase (GNAT) family BG11_5172 PF03745 Domain of unknown function (DUF309) BG11_5174 PF02616 Segregation and condensation protein ScpA BG11_5175 PF04079 Segregation and condensation complex subunit ScpB BG11_5177 PF01979 Amidohydrolase family BG11_5178 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BG11_518 PF07690 Major Facilitator Superfamily BG11_5181 PF03123 CAT RNA binding domain BG11_5181 PF00874 PRD domain BG11_5182 PF02378 Phosphotransferase system, EIIC BG11_5182 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG11_5182 PF00367 phosphotransferase system, EIIB BG11_5183 PF00381 PTS HPr component phosphorylation site BG11_5184 PF02896 PEP-utilising enzyme, TIM barrel domain BG11_5184 PF00391 PEP-utilising enzyme, mobile domain BG11_5184 PF05524 PEP-utilising enzyme, N-terminal BG11_5187 PF00881 Nitroreductase family BG11_5188 PF00990 Diguanylate cyclase, GGDEF domain BG11_5189 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG11_5189 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG11_519 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG11_519 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG11_5192 PF03079 ARD/ARD' family BG11_5193 PF00596 Class II Aldolase and Adducin N-terminal domain BG11_5195 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BG11_5195 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BG11_5196 PF00155 Aminotransferase class I and II BG11_5197 PF00795 Carbon-nitrogen hydrolase BG11_5198 PF01636 Phosphotransferase enzyme family BG11_52 PF04238 Protein of unknown function (DUF420) BG11_520 PF00486 Transcriptional regulatory protein, C terminal BG11_520 PF00072 Response regulator receiver domain BG11_5202 PF03551 Transcriptional regulator PadR-like family BG11_5208 PF00293 NUDIX domain BG11_5209 PF00108 Thiolase, N-terminal domain BG11_5209 PF02803 Thiolase, C-terminal domain BG11_521 PF00672 HAMP domain BG11_521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_521 PF00512 His Kinase A (phospho-acceptor) domain BG11_5217 PF17912 MalK OB fold domain BG11_5217 PF00005 ABC transporter BG11_5217 PF03459 TOBE domain BG11_5218 PF16657 Maltogenic Amylase, C-terminal domain BG11_5218 PF00128 Alpha amylase, catalytic domain BG11_5219 PF00128 Alpha amylase, catalytic domain BG11_5219 PF16657 Maltogenic Amylase, C-terminal domain BG11_5219 PF02903 Alpha amylase, N-terminal ig-like domain BG11_5220 PF13416 Bacterial extracellular solute-binding protein BG11_5221 PF00528 Binding-protein-dependent transport system inner membrane component BG11_5222 PF00528 Binding-protein-dependent transport system inner membrane component BG11_5223 PF00356 Bacterial regulatory proteins, lacI family BG11_5223 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG11_5224 PF00155 Aminotransferase class I and II BG11_5226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_5226 PF00512 His Kinase A (phospho-acceptor) domain BG11_5228 PF14040 Deoxyribonuclease NucA/NucB BG11_5230 PF08267 Cobalamin-independent synthase, N-terminal domain BG11_5230 PF01717 Cobalamin-independent synthase, Catalytic domain BG11_5232 PF07690 Major Facilitator Superfamily BG11_5237 PF14177 YkyB-like protein BG11_5238 PF02541 Ppx/GppA phosphatase family BG11_5239 PF13089 Polyphosphate kinase N-terminal domain BG11_5239 PF17941 Polyphosphate kinase C-terminal domain 1 BG11_5239 PF02503 Polyphosphate kinase middle domain BG11_5239 PF13090 Polyphosphate kinase C-terminal domain 2 BG11_524 PF02687 FtsX-like permease family BG11_5241 PF00149 Calcineurin-like phosphoesterase BG11_5241 PF10518 TAT (twin-arginine translocation) pathway signal sequence BG11_5243 PF00563 EAL domain BG11_5243 PF10388 EAL-domain associated signalling protein domain BG11_5246 PF08796 Protein of unknown function (DUF1797) BG11_5248 PF04308 Ribonuclease H-like BG11_525 PF00005 ABC transporter BG11_5251 PF03466 LysR substrate binding domain BG11_5251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_5252 PF00132 Bacterial transferase hexapeptide (six repeats) BG11_5252 PF14602 Hexapeptide repeat of succinyl-transferase BG11_5252 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BG11_5253 PF01546 Peptidase family M20/M25/M40 BG11_5253 PF07687 Peptidase dimerisation domain BG11_5255 PF02080 TrkA-C domain BG11_5255 PF02254 TrkA-N domain BG11_5256 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG11_5256 PF00753 Metallo-beta-lactamase superfamily BG11_5256 PF17770 Ribonuclease J C-terminal domain BG11_5259 PF01327 Polypeptide deformylase BG11_5261 PF00676 Dehydrogenase E1 component BG11_5262 PF02779 Transketolase, pyrimidine binding domain BG11_5262 PF02780 Transketolase, C-terminal domain BG11_5263 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG11_5263 PF00364 Biotin-requiring enzyme BG11_5263 PF02817 e3 binding domain BG11_5264 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG11_5264 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_5272 PF01276 Orn/Lys/Arg decarboxylase, major domain BG11_5272 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BG11_5273 PF05256 Uncharacterised protein family (UPF0223) BG11_5274 PF06335 Protein of unknown function (DUF1054) BG11_5276 PF00459 Inositol monophosphatase family BG11_5279 PF14036 YlaH-like protein BG11_528 PF04072 Leucine carboxyl methyltransferase BG11_5281 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BG11_5283 PF13638 PIN domain BG11_5283 PF02562 PhoH-like protein BG11_5285 PF07408 Protein of unknown function (DUF1507) BG11_5286 PF01098 Cell cycle protein BG11_5287 PF02436 Conserved carboxylase domain BG11_5287 PF00682 HMGL-like BG11_5287 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG11_5287 PF00364 Biotin-requiring enzyme BG11_5287 PF00289 Biotin carboxylase, N-terminal domain BG11_5287 PF02785 Biotin carboxylase C-terminal domain BG11_5288 PF02628 Cytochrome oxidase assembly protein BG11_5289 PF01040 UbiA prenyltransferase family BG11_5290 PF00034 Cytochrome c BG11_5290 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BG11_5290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BG11_5291 PF00115 Cytochrome C and Quinol oxidase polypeptide I BG11_5292 PF00510 Cytochrome c oxidase subunit III BG11_5293 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BG11_5294 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BG11_5295 PF00795 Carbon-nitrogen hydrolase BG11_5296 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_5297 PF00795 Carbon-nitrogen hydrolase BG11_5298 PF08868 YugN-like family BG11_5299 PF00188 Cysteine-rich secretory protein family BG11_5299 PF14504 CAP-associated N-terminal BG11_53 PF00465 Iron-containing alcohol dehydrogenase BG11_5300 PF14071 Putative coat protein BG11_5301 PF14003 YlbE-like protein BG11_5302 PF00300 Histidine phosphatase superfamily (branch 1) BG11_5303 PF06133 Control of competence regulator ComK, YlbF/YmcA BG11_5304 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BG11_5307 PF07670 Nucleoside recognition BG11_5308 PF01467 Cytidylyltransferase-like BG11_5309 PF01734 Patatin-like phospholipase BG11_5310 PF13180 PDZ domain BG11_5310 PF05362 Lon protease (S16) C-terminal proteolytic domain BG11_5311 PF05636 HIGH Nucleotidyl Transferase BG11_5312 PF02620 Large ribosomal RNA subunit accumulation protein YceD BG11_5313 PF01783 Ribosomal L32p protein family BG11_5315 PF00583 Acetyltransferase (GNAT) family BG11_5316 PF08546 Ketopantoate reductase PanE/ApbA C terminal BG11_5316 PF02558 Ketopantoate reductase PanE/ApbA BG11_5317 PF10079 Bacillithiol biosynthesis BshC BG11_5318 PF01795 MraW methylase family BG11_5319 PF04977 Septum formation initiator BG11_532 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG11_532 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG11_5321 PF03793 PASTA domain BG11_5321 PF00905 Penicillin binding protein transpeptidase domain BG11_5321 PF03717 Penicillin-binding Protein dimerisation domain BG11_5322 PF08245 Mur ligase middle domain BG11_5322 PF02875 Mur ligase family, glutamate ligase domain BG11_5322 PF01225 Mur ligase family, catalytic domain BG11_5323 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BG11_5323 PF00953 Glycosyl transferase family 4 BG11_5324 PF08245 Mur ligase middle domain BG11_5324 PF02875 Mur ligase family, glutamate ligase domain BG11_5325 PF01098 Cell cycle protein BG11_5326 PF04101 Glycosyltransferase family 28 C-terminal domain BG11_5326 PF03033 Glycosyltransferase family 28 N-terminal domain BG11_5327 PF01565 FAD binding domain BG11_5327 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BG11_5328 PF08478 POTRA domain, FtsQ-type BG11_5328 PF03799 Cell division protein FtsQ BG11_5329 PF02491 SHS2 domain inserted in FTSA BG11_5330 PF00091 Tubulin/FtsZ family, GTPase domain BG11_5330 PF12327 FtsZ family, C-terminal domain BG11_5331 PF03419 Sporulation factor SpoIIGA BG11_5332 PF04542 Sigma-70 region 2 BG11_5332 PF04545 Sigma-70, region 4 BG11_5333 PF04542 Sigma-70 region 2 BG11_5333 PF04539 Sigma-70 region 3 BG11_5333 PF04545 Sigma-70, region 4 BG11_5334 PF05239 PRC-barrel domain BG11_5336 PF01168 Alanine racemase, N-terminal domain BG11_5337 PF04472 Cell division protein SepF BG11_5338 PF02325 YGGT family BG11_5339 PF01479 S4 domain BG11_5339 PF17774 Putative RNA-binding domain in YlmH BG11_534 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BG11_5340 PF05103 DivIVA protein BG11_5341 PF00133 tRNA synthetases class I (I, L, M and V) BG11_5341 PF06827 Zinc finger found in FPG and IleRS BG11_5341 PF08264 Anticodon-binding domain of tRNA BG11_5343 PF01252 Signal peptidase (SPase) II BG11_5344 PF00849 RNA pseudouridylate synthase BG11_5344 PF01479 S4 domain BG11_5345 PF00156 Phosphoribosyl transferase domain BG11_5346 PF00860 Permease family BG11_5347 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BG11_5347 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BG11_5348 PF01979 Amidohydrolase family BG11_5349 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BG11_5349 PF00117 Glutamine amidotransferase class-I BG11_535 PF00753 Metallo-beta-lactamase superfamily BG11_5350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG11_5350 PF02142 MGS-like domain BG11_5350 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BG11_5351 PF00175 Oxidoreductase NAD-binding domain BG11_5351 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BG11_5352 PF01180 Dihydroorotate dehydrogenase BG11_5353 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BG11_5354 PF00156 Phosphoribosyl transferase domain BG11_5360 PF01321 Creatinase/Prolidase N-terminal domain BG11_5360 PF00557 Metallopeptidase family M24 BG11_5362 PF00689 Cation transporting ATPase, C-terminus BG11_5362 PF00690 Cation transporter/ATPase, N-terminus BG11_5363 PF03755 YicC-like family, N-terminal region BG11_5363 PF08340 Domain of unknown function (DUF1732) BG11_5364 PF04025 Domain of unknown function (DUF370) BG11_5365 PF00625 Guanylate kinase BG11_5366 PF01192 RNA polymerase Rpb6 BG11_5367 PF02441 Flavoprotein BG11_5367 PF04127 DNA / pantothenate metabolism flavoprotein BG11_5368 PF00271 Helicase conserved C-terminal domain BG11_5368 PF17764 3′ DNA-binding domain (3′BD) BG11_5368 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BG11_5368 PF04851 Type III restriction enzyme, res subunit BG11_5368 PF18074 Primosomal protein N C-terminal domain BG11_5369 PF01327 Polypeptide deformylase BG11_5370 PF02911 Formyl transferase, C-terminal domain BG11_5370 PF00551 Formyl transferase BG11_5371 PF01029 NusB family BG11_5371 PF01189 16S rRNA methyltransferase RsmB/F BG11_5372 PF04055 Radical SAM superfamily BG11_5374 PF03793 PASTA domain BG11_5374 PF00069 Protein kinase domain BG11_5375 PF03193 RsgA GTPase BG11_5375 PF16745 RsgA N-terminal domain BG11_5376 PF00834 Ribulose-phosphate 3 epimerase family BG11_5377 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BG11_5377 PF04263 Thiamin pyrophosphokinase, catalytic domain BG11_5378 PF00830 Ribosomal L28 family BG11_5379 PF03780 Asp23 family, cell envelope-related function BG11_538 PF00144 Beta-lactamase BG11_5380 PF02734 DAK2 domain BG11_5380 PF13684 Dihydroxyacetone kinase family BG11_5381 PF17191 RecG wedge domain BG11_5381 PF00271 Helicase conserved C-terminal domain BG11_5381 PF00270 DEAD/DEAH box helicase BG11_5382 PF03061 Thioesterase superfamily BG11_5383 PF02504 Fatty acid synthesis protein BG11_5384 PF00698 Acyl transferase domain BG11_5386 PF00550 Phosphopantetheine attachment site BG11_5387 PF00035 Double-stranded RNA binding motif BG11_5387 PF14622 Ribonuclease-III-like BG11_5388 PF02463 RecF/RecN/SMC N terminal domain BG11_5388 PF06470 SMC proteins Flexible Hinge Domain BG11_5389 PF02881 SRP54-type protein, helical bundle domain BG11_5389 PF00448 SRP54-type protein, GTPase domain BG11_5390 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BG11_5391 PF00448 SRP54-type protein, GTPase domain BG11_5391 PF02978 Signal peptide binding domain BG11_5391 PF02881 SRP54-type protein, helical bundle domain BG11_5392 PF00886 Ribosomal protein S16 BG11_5394 PF01782 RimM N-terminal domain BG11_5394 PF05239 PRC-barrel domain BG11_5395 PF01746 tRNA (Guanine-1)-methyltransferase BG11_5396 PF01245 Ribosomal protein L19 BG11_5397 PF10502 Signal peptidase, peptidase S26 BG11_5398 PF01926 50S ribosome-binding GTPase BG11_5399 PF01351 Ribonuclease HII BG11_54 PF00455 DeoR C terminal sensor domain BG11_54 PF08220 DeoR-like helix-turn-helix domain BG11_540 PF00291 Pyridoxal-phosphate dependent enzyme BG11_5400 PF08442 ATP-grasp domain BG11_5400 PF00549 CoA-ligase BG11_5401 PF00549 CoA-ligase BG11_5401 PF02629 CoA binding domain BG11_5402 PF02481 DNA recombination-mediator protein A BG11_5403 PF01751 Toprim domain BG11_5403 PF01131 DNA topoisomerase BG11_5403 PF01396 Topoisomerase DNA binding C4 zinc finger BG11_5404 PF01134 Glucose inhibited division protein A BG11_5405 PF00589 Phage integrase family BG11_5405 PF02899 Phage integrase, N-terminal SAM-like domain BG11_5406 PF00227 Proteasome subunit BG11_5407 PF07724 AAA domain (Cdc48 subfamily) BG11_5407 PF00004 ATPase family associated with various cellular activities (AAA) BG11_5407 PF10431 C-terminal, D2-small domain, of ClpB protein BG11_5408 PF08222 CodY helix-turn-helix domain BG11_5408 PF06018 CodY GAF-like domain BG11_5409 PF00318 Ribosomal protein S2 BG11_5410 PF00889 Elongation factor TS BG11_5411 PF00696 Amino acid kinase family BG11_5412 PF01765 Ribosome recycling factor BG11_5413 PF01255 Putative undecaprenyl diphosphate synthase BG11_5415 PF13288 DXP reductoisomerase C-terminal domain BG11_5415 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BG11_5415 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BG11_5416 PF17820 PDZ domain BG11_5416 PF02163 Peptidase family M50 BG11_5417 PF04073 Aminoacyl-tRNA editing domain BG11_5417 PF03129 Anticodon binding domain BG11_5417 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG11_5418 PF14480 DNA polymerase III polC-type N-terminus I BG11_5418 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG11_5418 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG11_5418 PF11490 DNA polymerase III polC-type N-terminus II BG11_5418 PF00929 Exonuclease BG11_5418 PF02811 PHP domain BG11_5418 PF14579 Helix-hairpin-helix motif BG11_5419 PF17384 RimP C-terminal SH3 domain BG11_5419 PF02576 RimP N-terminal domain BG11_5420 PF13184 NusA-like KH domain BG11_5420 PF08529 NusA N-terminal domain BG11_5420 PF00575 S1 RNA binding domain BG11_5421 PF04296 Protein of unknown function (DUF448) BG11_5422 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BG11_5423 PF04760 Translation initiation factor IF-2, N-terminal region BG11_5423 PF11987 Translation-initiation factor 2 BG11_5423 PF00009 Elongation factor Tu GTP binding domain BG11_5424 PF04456 Protein of unknown function (DUF503) BG11_5425 PF02033 Ribosome-binding factor A BG11_5426 PF01509 TruB family pseudouridylate synthase (N terminal domain) BG11_5426 PF16198 tRNA pseudouridylate synthase B C-terminal domain BG11_5427 PF01687 Riboflavin kinase BG11_5427 PF06574 FAD synthetase BG11_5428 PF00312 Ribosomal protein S15 BG11_5429 PF00013 KH domain BG11_5429 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BG11_5429 PF01138 3' exoribonuclease family, domain 1 BG11_5429 PF03725 3' exoribonuclease family, domain 2 BG11_5429 PF00575 S1 RNA binding domain BG11_5430 PF01522 Polysaccharide deacetylase BG11_5431 PF05193 Peptidase M16 inactive domain BG11_5431 PF00675 Insulinase (Peptidase family M16) BG11_5432 PF05239 PRC-barrel domain BG11_5433 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG11_5433 PF16924 Dipicolinate synthase subunit A N-terminal domain BG11_5434 PF02441 Flavoprotein BG11_5435 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG11_5435 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG11_5436 PF13840 ACT domain BG11_5436 PF00696 Amino acid kinase family BG11_5437 PF00701 Dihydrodipicolinate synthetase family BG11_5438 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG11_5438 PF00753 Metallo-beta-lactamase superfamily BG11_5438 PF17770 Ribonuclease J C-terminal domain BG11_5439 PF00574 Clp protease BG11_5440 PF14035 YlzJ-like protein BG11_5441 PF01580 FtsK/SpoIIIE family BG11_5441 PF09397 Ftsk gamma domain BG11_5441 PF17854 FtsK alpha domain BG11_5442 PF00392 Bacterial regulatory proteins, gntR family BG11_5442 PF07702 UTRA domain BG11_5447 PF05193 Peptidase M16 inactive domain BG11_5448 PF00675 Insulinase (Peptidase family M16) BG11_5448 PF05193 Peptidase M16 inactive domain BG11_545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_545 PF00672 HAMP domain BG11_545 PF00512 His Kinase A (phospho-acceptor) domain BG11_5450 PF11588 Protein of unknown function (DUF3243) BG11_5451 PF11868 Protein of unknown function (DUF3388) BG11_5452 PF13464 Domain of unknown function (DUF4115) BG11_5453 PF01066 CDP-alcohol phosphatidyltransferase BG11_5454 PF00994 Probable molybdopterin binding domain BG11_5454 PF18146 Damage-inducible protein CinA KH domain BG11_5454 PF02464 Competence-damaged protein BG11_5455 PF00154 recA bacterial DNA recombination protein BG11_5456 PF00154 recA bacterial DNA recombination protein BG11_5457 PF01966 HD domain BG11_5457 PF12072 Domain of unknown function (DUF3552) BG11_5457 PF00013 KH domain BG11_5458 PF13277 YmdB-like protein BG11_5459 PF04232 Stage V sporulation protein S (SpoVS) BG11_546 PF00072 Response regulator receiver domain BG11_546 PF00486 Transcriptional regulatory protein, C terminal BG11_5460 PF01244 Membrane dipeptidase (Peptidase family M19) BG11_5462 PF01494 FAD binding domain BG11_5483 PF01580 FtsK/SpoIIIE family BG11_5483 PF17854 FtsK alpha domain BG11_5483 PF09397 Ftsk gamma domain BG11_5486 PF01381 Helix-turn-helix BG11_5492 PF12169 DNA polymerase III subunits gamma and tau domain III BG11_5494 PF00580 UvrD/REP helicase N-terminal domain BG11_5494 PF13361 UvrD-like helicase C-terminal domain BG11_5495 PF09115 DNA polymerase III, delta subunit, C terminal BG11_5499 PF00092 von Willebrand factor type A domain BG11_55 PF00294 pfkB family carbohydrate kinase BG11_5500 PF18277 AbrB C-terminal domain BG11_5500 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG11_5506 PF13276 HTH-like domain BG11_5506 PF00665 Integrase core domain BG11_5506 PF13333 Integrase core domain BG11_5507 PF02557 D-alanyl-D-alanine carboxypeptidase BG11_551 PF07690 Major Facilitator Superfamily BG11_5511 PF02374 Anion-transporting ATPase BG11_5512 PF06953 Arsenical resistance operon trans-acting repressor ArsD BG11_5513 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG11_5514 PF01758 Sodium Bile acid symporter family BG11_5515 PF01022 Bacterial regulatory protein, arsR family BG11_5519 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG11_5519 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG11_552 PF00067 Cytochrome P450 BG11_552 PF00175 Oxidoreductase NAD-binding domain BG11_552 PF00667 FAD binding domain BG11_552 PF00258 Flavodoxin BG11_5520 PF00230 Major intrinsic protein BG11_5522 PF01381 Helix-turn-helix BG11_5523 PF01384 Phosphate transporter family BG11_5524 PF01022 Bacterial regulatory protein, arsR family BG11_5525 PF02655 ATP-grasp domain BG11_5525 PF00206 Lyase BG11_5527 PF01047 MarR family BG11_553 PF12802 MarR family BG11_5536 PF00403 Heavy-metal-associated domain BG11_5537 PF00403 Heavy-metal-associated domain BG11_5538 PF02583 Metal-sensitive transcriptional repressor BG11_5539 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BG11_5539 PF01297 Zinc-uptake complex component A periplasmic BG11_5543 PF00578 AhpC/TSA family BG11_5544 PF01790 Prolipoprotein diacylglyceryl transferase BG11_5545 PF03860 Domain of Unknown Function (DUF326) BG11_5546 PF01522 Polysaccharide deacetylase BG11_5556 PF00291 Pyridoxal-phosphate dependent enzyme BG11_556 PF00665 Integrase core domain BG11_556 PF13333 Integrase core domain BG11_556 PF13276 HTH-like domain BG11_5563 PF00085 Thioredoxin BG11_5567 PF00005 ABC transporter BG11_5568 PF00264 Common central domain of tyrosinase BG11_5569 PF07732 Multicopper oxidase BG11_5569 PF00394 Multicopper oxidase BG11_5569 PF07731 Multicopper oxidase BG11_5570 PF00486 Transcriptional regulatory protein, C terminal BG11_5570 PF00072 Response regulator receiver domain BG11_5571 PF00512 His Kinase A (phospho-acceptor) domain BG11_5571 PF00989 PAS fold BG11_5571 PF16736 Single Cache-like BG11_5571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_5573 PF07454 Stage II sporulation protein P (SpoIIP) BG11_558 PF00144 Beta-lactamase BG11_5582 PF04262 Glutamate-cysteine ligase BG11_5582 PF18419 ATP-grasp-like domain BG11_5582 PF02655 ATP-grasp domain BG11_5584 PF00756 Putative esterase BG11_5585 PF08240 Alcohol dehydrogenase GroES-like domain BG11_5585 PF00107 Zinc-binding dehydrogenase BG11_5586 PF01638 HxlR-like helix-turn-helix BG11_5587 PF13700 Domain of unknown function (DUF4158) BG11_5587 PF01526 Tn3 transposase DDE domain BG11_5590 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_5591 PF03845 Spore germination protein BG11_5593 PF02796 Helix-turn-helix domain of resolvase BG11_5593 PF00239 Resolvase, N terminal domain BG11_5594 PF00574 Clp protease BG11_5595 PF04239 Protein of unknown function (DUF421) BG11_5597 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG11_5598 PF07451 Stage V sporulation protein AD (SpoVAD) BG11_5599 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG11_56 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG11_56 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG11_560 PF12833 Helix-turn-helix domain BG11_560 PF02805 Metal binding domain of Ada BG11_5602 PF00589 Phage integrase family BG11_5602 PF02899 Phage integrase, N-terminal SAM-like domain BG11_5604 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_5605 PF05036 Sporulation related domain BG11_5605 PF01520 N-acetylmuramoyl-L-alanine amidase BG11_5607 PF02796 Helix-turn-helix domain of resolvase BG11_5607 PF00239 Resolvase, N terminal domain BG11_5609 PF00239 Resolvase, N terminal domain BG11_5609 PF02796 Helix-turn-helix domain of resolvase BG11_5610 PF00665 Integrase core domain BG11_5610 PF09299 Mu transposase, C-terminal BG11_5611 PF13401 AAA domain BG11_5612 PF00239 Resolvase, N terminal domain BG11_5612 PF02796 Helix-turn-helix domain of resolvase BG11_5613 PF06445 GyrI-like small molecule binding domain BG11_5613 PF12833 Helix-turn-helix domain BG11_5614 PF03845 Spore germination protein BG11_5615 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_5618 PF00857 Isochorismatase family BG11_5621 PF05504 Spore germination B3/ GerAC like, C-terminal BG11_5623 PF01609 Transposase DDE domain BG11_5625 PF13700 Domain of unknown function (DUF4158) BG11_5625 PF01526 Tn3 transposase DDE domain BG11_5626 PF13419 Haloacid dehalogenase-like hydrolase BG11_5628 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_5634 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_5638 PF00155 Aminotransferase class I and II BG11_5638 PF00392 Bacterial regulatory proteins, gntR family BG11_5639 PF00117 Glutamine amidotransferase class-I BG11_564 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG11_5641 PF08808 RES domain BG11_5648 PF07972 NrdI Flavodoxin like BG11_5667 PF01348 Type II intron maturase BG11_5667 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_567 PF01037 Lrp/AsnC ligand binding domain BG11_5676 PF10502 Signal peptidase, peptidase S26 BG11_5681 PF06144 DNA polymerase III, delta subunit BG11_5683 PF03979 Sigma-70 factor, region 1.1 BG11_5683 PF04539 Sigma-70 region 3 BG11_5683 PF00140 Sigma-70 factor, region 1.2 BG11_5683 PF04542 Sigma-70 region 2 BG11_5683 PF04545 Sigma-70, region 4 BG11_5686 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_569 PF18665 Tetracyclin repressor-like, C-terminal domain BG11_569 PF00440 Bacterial regulatory proteins, tetR family BG11_5698 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_5698 PF01348 Type II intron maturase BG11_57 PF01476 LysM domain BG11_57 PF06725 3D domain BG11_570 PF00550 Phosphopantetheine attachment site BG11_570 PF07993 Male sterility protein BG11_571 PF00583 Acetyltransferase (GNAT) family BG11_5713 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BG11_5717 PF00877 NlpC/P60 family BG11_572 PF00486 Transcriptional regulatory protein, C terminal BG11_572 PF00072 Response regulator receiver domain BG11_5720 PF00005 ABC transporter BG11_5724 PF04055 Radical SAM superfamily BG11_5724 PF06463 Molybdenum Cofactor Synthesis C BG11_5729 PF13276 HTH-like domain BG11_5729 PF00665 Integrase core domain BG11_5729 PF13333 Integrase core domain BG11_573 PF00672 HAMP domain BG11_573 PF00512 His Kinase A (phospho-acceptor) domain BG11_573 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_574 PF04892 VanZ like family BG11_5740 PF05163 DinB family BG11_5747 PF07282 Putative transposase DNA-binding domain BG11_5747 PF12323 Helix-turn-helix domain BG11_5747 PF01385 Probable transposase BG11_5761 PF01510 N-acetylmuramoyl-L-alanine amidase BG11_5764 PF01541 GIY-YIG catalytic domain BG11_577 PF01022 Bacterial regulatory protein, arsR family BG11_5770 PF13411 MerR HTH family regulatory protein BG11_5770 PF13152 Protein of unknown function (DUF3967) BG11_5773 PF13614 AAA domain BG11_578 PF01758 Sodium Bile acid symporter family BG11_5781 PF01381 Helix-turn-helix BG11_5787 PF09588 YqaJ-like viral recombinase domain BG11_5788 PF03837 RecT family BG11_579 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG11_5793 PF00772 DnaB-like helicase N terminal domain BG11_5793 PF03796 DnaB-like helicase C terminal domain BG11_5813 PF05866 Endodeoxyribonuclease RusA BG11_5820 PF10668 Phage terminase small subunit BG11_5822 PF04860 Phage portal protein BG11_5823 PF04233 Phage Mu protein F like protein BG11_5824 PF14550 Putative phage serine protease XkdF BG11_5825 PF05065 Phage capsid family BG11_5829 PF04883 Bacteriophage HK97-gp10, putative tail-component BG11_583 PF00005 ABC transporter BG11_584 PF12996 DUF based on E. rectale Gene description (DUF3880) BG11_5841 PF00239 Resolvase, N terminal domain BG11_5841 PF02796 Helix-turn-helix domain of resolvase BG11_585 PF00561 alpha/beta hydrolase fold BG11_586 PF01040 UbiA prenyltransferase family BG11_588 PF10057 Uncharacterized conserved protein (DUF2294) BG11_589 PF00361 Proton-conducting membrane transporter BG11_589 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BG11_590 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BG11_592 PF00875 DNA photolyase BG11_592 PF03441 FAD binding domain of DNA photolyase BG11_593 PF03073 TspO/MBR family BG11_596 PF11181 Heat induced stress protein YflT BG11_599 PF01544 CorA-like Mg2+ transporter protein BG11_6 PF01624 MutS domain I BG11_6 PF05190 MutS family domain IV BG11_6 PF05192 MutS domain III BG11_6 PF05188 MutS domain II BG11_6 PF00488 MutS domain V BG11_60 PF17209 Hfq protein BG11_600 PF01047 MarR family BG11_601 PF03466 LysR substrate binding domain BG11_601 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG11_602 PF01979 Amidohydrolase family BG11_605 PF00857 Isochorismatase family BG11_606 PF00561 alpha/beta hydrolase fold BG11_607 PF06628 Catalase-related immune-responsive BG11_607 PF00199 Catalase BG11_608 PF00149 Calcineurin-like phosphoesterase BG11_608 PF17936 Bacterial Ig domain BG11_608 PF02872 5'-nucleotidase, C-terminal domain BG11_610 PF01235 Sodium:alanine symporter family BG11_611 PF04960 Glutaminase BG11_612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_613 PF08664 YcbB domain BG11_613 PF00072 Response regulator receiver domain BG11_614 PF03323 Bacillus/Clostridium GerA spore germination protein BG11_615 PF03845 Spore germination protein BG11_616 PF05504 Spore germination B3/ GerAC like, C-terminal BG11_618 PF13564 DoxX-like family BG11_619 PF03807 NADP oxidoreductase coenzyme F420-dependent BG11_619 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG11_620 PF05525 Branched-chain amino acid transport protein BG11_621 PF13520 Amino acid permease BG11_622 PF12826 Helix-hairpin-helix motif BG11_622 PF02151 UvrB/uvrC motif BG11_622 PF01541 GIY-YIG catalytic domain BG11_622 PF08459 UvrC Helix-hairpin-helix N-terminal BG11_624 PF01381 Helix-turn-helix BG11_625 PF17763 Glutaminase/Asparaginase C-terminal domain BG11_625 PF00710 Asparaginase, N-terminal BG11_626 PF10415 Fumarase C C-terminus BG11_626 PF00206 Lyase BG11_628 PF08240 Alcohol dehydrogenase GroES-like domain BG11_628 PF13823 Alcohol dehydrogenase GroES-associated BG11_628 PF00107 Zinc-binding dehydrogenase BG11_629 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_63 PF00004 ATPase family associated with various cellular activities (AAA) BG11_63 PF17866 AAA lid domain BG11_630 PF11553 Protein of unknown function (DUF3231) BG11_631 PF10710 Protein of unknown function (DUF2512) BG11_632 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG11_634 PF00324 Amino acid permease BG11_635 PF01810 LysE type translocator BG11_636 PF08892 YqcI/YcgG family BG11_638 PF07875 Coat F domain BG11_641 PF00753 Metallo-beta-lactamase superfamily BG11_643 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BG11_643 PF00391 PEP-utilising enzyme, mobile domain BG11_644 PF00440 Bacterial regulatory proteins, tetR family BG11_646 PF02915 Rubrerythrin BG11_65 PF03458 UPF0126 domain BG11_653 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG11_653 PF02770 Acyl-CoA dehydrogenase, middle domain BG11_653 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BG11_656 PF07454 Stage II sporulation protein P (SpoIIP) BG11_657 PF03932 CutC family BG11_658 PF10502 Signal peptidase, peptidase S26 BG11_659 PF01614 Bacterial transcriptional regulator BG11_659 PF09339 IclR helix-turn-helix domain BG11_66 PF01926 50S ribosome-binding GTPase BG11_66 PF16360 GTP-binding GTPase Middle Region BG11_66 PF13167 GTP-binding GTPase N-terminal BG11_660 PF02682 Carboxyltransferase domain, subdomain C and D BG11_661 PF02626 Carboxyltransferase domain, subdomain A and B BG11_662 PF03746 LamB/YcsF family BG11_666 PF01470 Pyroglutamyl peptidase BG11_667 PF02146 Sir2 family BG11_67 PF06838 Methionine gamma-lyase BG11_670 PF10502 Signal peptidase, peptidase S26 BG11_672 PF00293 NUDIX domain BG11_674 PF10898 Protein of unknown function (DUF2716) BG11_675 PF08713 DNA alkylation repair enzyme BG11_677 PF00324 Amino acid permease BG11_678 PF13302 Acetyltransferase (GNAT) domain BG11_679 PF01925 Sulfite exporter TauE/SafE BG11_68 PF13411 MerR HTH family regulatory protein BG11_686 PF13031 Protein of unknown function (DUF3892) BG11_687 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BG11_688 PF00392 Bacterial regulatory proteins, gntR family BG11_688 PF00155 Aminotransferase class I and II BG11_689 PF00892 EamA-like transporter family BG11_69 PF03951 Glutamine synthetase, beta-Grasp domain BG11_69 PF00120 Glutamine synthetase, catalytic domain BG11_692 PF00583 Acetyltransferase (GNAT) family BG11_693 PF12833 Helix-turn-helix domain BG11_698 PF00005 ABC transporter BG11_7 PF01119 DNA mismatch repair protein, C-terminal domain BG11_7 PF08676 MutL C terminal dimerisation domain BG11_700 PF00392 Bacterial regulatory proteins, gntR family BG11_701 PF00005 ABC transporter BG11_704 PF00293 NUDIX domain BG11_706 PF07969 Amidohydrolase family BG11_707 PF07690 Major Facilitator Superfamily BG11_708 PF13556 PucR C-terminal helix-turn-helix domain BG11_708 PF17853 GGDEF-like domain BG11_708 PF07905 Purine catabolism regulatory protein-like family BG11_710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG11_713 PF02378 Phosphotransferase system, EIIC BG11_714 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG11_715 PF00232 Glycosyl hydrolase family 1 BG11_716 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BG11_716 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BG11_717 PF00378 Enoyl-CoA hydratase/isomerase BG11_718 PF02803 Thiolase, C-terminal domain BG11_718 PF00108 Thiolase, N-terminal domain BG11_719 PF13193 AMP-binding enzyme C-terminal domain BG11_719 PF00501 AMP-binding enzyme BG11_72 PF14431 YwqJ-like deaminase BG11_72 PF04740 LXG domain of WXG superfamily BG11_72 PF14449 Pre-toxin TG BG11_721 PF01494 FAD binding domain BG11_723 PF01557 Fumarylacetoacetate (FAA) hydrolase family BG11_725 PF07883 Cupin domain BG11_726 PF14492 Elongation Factor G, domain II BG11_726 PF00679 Elongation factor G C-terminus BG11_726 PF03764 Elongation factor G, domain IV BG11_726 PF00009 Elongation factor Tu GTP binding domain BG11_727 PF01047 MarR family BG11_728 PF00881 Nitroreductase family BG11_733 PF00144 Beta-lactamase BG11_734 PF01979 Amidohydrolase family BG11_734 PF13382 Adenine deaminase C-terminal domain BG11_736 PF06628 Catalase-related immune-responsive BG11_736 PF00199 Catalase BG11_737 PF00202 Aminotransferase class-III BG11_739 PF00535 Glycosyl transferase family 2 BG11_740 PF00535 Glycosyl transferase family 2 BG11_743 PF00535 Glycosyl transferase family 2 BG11_745 PF07690 Major Facilitator Superfamily BG11_748 PF07726 ATPase family associated with various cellular activities (AAA) BG11_748 PF17863 AAA lid domain BG11_75 PF03551 Transcriptional regulator PadR-like family BG11_753 PF12681 Glyoxalase-like domain BG11_754 PF13302 Acetyltransferase (GNAT) domain BG11_756 PF00072 Response regulator receiver domain BG11_756 PF04397 LytTr DNA-binding domain BG11_758 PF10086 YhfC intramembrane metalloprotease BG11_761 PF13443 Cro/C1-type HTH DNA-binding domain BG11_762 PF11188 Protein of unknown function (DUF2975) BG11_763 PF00245 Alkaline phosphatase BG11_764 PF00487 Fatty acid desaturase BG11_765 PF01139 tRNA-splicing ligase RtcB BG11_766 PF00324 Amino acid permease BG11_767 PF09339 IclR helix-turn-helix domain BG11_767 PF01614 Bacterial transcriptional regulator BG11_768 PF01546 Peptidase family M20/M25/M40 BG11_771 PF13333 Integrase core domain BG11_771 PF00665 Integrase core domain BG11_771 PF13276 HTH-like domain BG11_773 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG11_773 PF03807 NADP oxidoreductase coenzyme F420-dependent BG11_774 PF01472 PUA domain BG11_774 PF00696 Amino acid kinase family BG11_775 PF00171 Aldehyde dehydrogenase family BG11_776 PF07662 Na+ dependent nucleoside transporter C-terminus BG11_776 PF01773 Na+ dependent nucleoside transporter N-terminus BG11_78 PF00717 Peptidase S24-like BG11_78 PF01726 LexA DNA binding domain BG11_780 PF03992 Antibiotic biosynthesis monooxygenase BG11_785 PF01791 DeoC/LacD family aldolase BG11_787 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG11_787 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG11_788 PF04198 Putative sugar-binding domain BG11_788 PF00325 Bacterial regulatory proteins, crp family BG11_789 PF00005 ABC transporter BG11_79 PF00239 Resolvase, N terminal domain BG11_790 PF02653 Branched-chain amino acid transport system / permease component BG11_791 PF02653 Branched-chain amino acid transport system / permease component BG11_792 PF13407 Periplasmic binding protein domain BG11_793 PF06039 Malate:quinone oxidoreductase (Mqo) BG11_796 PF00158 Sigma-54 interaction domain BG11_796 PF00989 PAS fold BG11_796 PF02954 Bacterial regulatory protein, Fis family BG11_797 PF00501 AMP-binding enzyme BG11_797 PF13193 AMP-binding enzyme C-terminal domain BG11_798 PF00378 Enoyl-CoA hydratase/isomerase BG11_8 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BG11_80 PF05979 Bacterial protein of unknown function (DUF896) BG11_801 PF01476 LysM domain BG11_801 PF06725 3D domain BG11_804 PF01636 Phosphotransferase enzyme family BG11_808 PF01817 Chorismate mutase type II BG11_808 PF00793 DAHP synthetase I family BG11_809 PF01264 Chorismate synthase BG11_81 PF00149 Calcineurin-like phosphoesterase BG11_81 PF02872 5'-nucleotidase, C-terminal domain BG11_810 PF00155 Aminotransferase class I and II BG11_811 PF01842 ACT domain BG11_811 PF02153 Prephenate dehydrogenase BG11_812 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG11_814 PF16295 Tetracyclin repressor-like, C-terminal domain BG11_814 PF00440 Bacterial regulatory proteins, tetR family BG11_815 PF03176 MMPL family BG11_817 PF00005 ABC transporter BG11_817 PF12848 ABC transporter BG11_818 PF00884 Sulfatase BG11_819 PF03741 Integral membrane protein TerC family BG11_821 PF01522 Polysaccharide deacetylase BG11_823 PF08713 DNA alkylation repair enzyme BG11_827 PF12867 DinB superfamily BG11_828 PF13536 Putative multidrug resistance efflux transporter BG11_83 PF00005 ABC transporter BG11_833 PF02522 Aminoglycoside 3-N-acetyltransferase BG11_84 PF00528 Binding-protein-dependent transport system inner membrane component BG11_841 PF00005 ABC transporter BG11_842 PF09084 NMT1/THI5 like BG11_843 PF00528 Binding-protein-dependent transport system inner membrane component BG11_844 PF00296 Luciferase-like monooxygenase BG11_846 PF01594 AI-2E family transporter BG11_85 PF00528 Binding-protein-dependent transport system inner membrane component BG11_855 PF00005 ABC transporter BG11_859 PF03630 Fumble BG11_86 PF07282 Putative transposase DNA-binding domain BG11_86 PF12323 Helix-turn-helix domain BG11_86 PF01385 Probable transposase BG11_860 PF07977 FabA-like domain BG11_861 PF00155 Aminotransferase class I and II BG11_868 PF08241 Methyltransferase domain BG11_87 PF00456 Transketolase, thiamine diphosphate binding domain BG11_87 PF02779 Transketolase, pyrimidine binding domain BG11_87 PF02780 Transketolase, C-terminal domain BG11_870 PF01156 Inosine-uridine preferring nucleoside hydrolase BG11_871 PF04226 Transglycosylase associated protein BG11_875 PF07690 Major Facilitator Superfamily BG11_876 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_876 PF12793 Sugar transport-related sRNA regulator N-term BG11_877 PF13171 Protein of unknown function (DUF4004) BG11_878 PF04519 Polymer-forming cytoskeletal BG11_88 PF10747 Sporulation inhibitor of replication protein SirA BG11_880 PF07690 Major Facilitator Superfamily BG11_884 PF02645 Uncharacterised protein, DegV family COG1307 BG11_886 PF01432 Peptidase family M3 BG11_886 PF08439 Oligopeptidase F BG11_887 PF03808 Glycosyl transferase WecB/TagA/CpsF family BG11_889 PF01048 Phosphorylase superfamily BG11_89 PF03672 Uncharacterised protein family (UPF0154) BG11_893 PF00072 Response regulator receiver domain BG11_893 PF00486 Transcriptional regulatory protein, C terminal BG11_894 PF00512 His Kinase A (phospho-acceptor) domain BG11_894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG11_894 PF16736 Single Cache-like BG11_894 PF00989 PAS fold BG11_895 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BG11_895 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BG11_90 PF00005 ABC transporter BG11_90 PF00664 ABC transporter transmembrane region BG11_902 PF13378 Enolase C-terminal domain-like BG11_902 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG11_903 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BG11_903 PF00877 NlpC/P60 family BG11_904 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG11_905 PF00958 GMP synthase C terminal domain BG11_905 PF00117 Glutamine amidotransferase class-I BG11_905 PF03352 Methyladenine glycosylase BG11_905 PF13302 Acetyltransferase (GNAT) domain BG11_905 PF13673 Acetyltransferase (GNAT) domain BG11_906 PF04914 DltD protein BG11_909 PF09335 SNARE associated Golgi protein BG11_91 PF00664 ABC transporter transmembrane region BG11_91 PF00005 ABC transporter BG11_910 PF08876 Domain of unknown function (DUF1836) BG11_913 PF04324 BFD-like [2Fe-2S] binding domain BG11_913 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_915 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_915 PF04324 BFD-like [2Fe-2S] binding domain BG11_916 PF13188 PAS domain BG11_916 PF02954 Bacterial regulatory protein, Fis family BG11_916 PF00158 Sigma-54 interaction domain BG11_917 PF01266 FAD dependent oxidoreductase BG11_918 PF05544 Proline racemase BG11_919 PF05544 Proline racemase BG11_920 PF00701 Dihydrodipicolinate synthetase family BG11_921 PF00171 Aldehyde dehydrogenase family BG11_922 PF01235 Sodium:alanine symporter family BG11_923 PF02627 Carboxymuconolactone decarboxylase family BG11_925 PF18416 N-acetylglucosamine binding protein domain 2 BG11_925 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BG11_926 PF02833 DHHA2 domain BG11_926 PF01368 DHH family BG11_934 PF00570 HRDC domain BG11_934 PF00270 DEAD/DEAH box helicase BG11_934 PF00271 Helicase conserved C-terminal domain BG11_934 PF09382 RQC domain BG11_934 PF16124 RecQ zinc-binding BG11_935 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BG11_938 PF13538 UvrD-like helicase C-terminal domain BG11_94 PF01471 Putative peptidoglycan binding domain BG11_94 PF01510 N-acetylmuramoyl-L-alanine amidase BG11_949 PF00753 Metallo-beta-lactamase superfamily BG11_949 PF03772 Competence protein BG11_949 PF13567 Domain of unknown function (DUF4131) BG11_953 PF08241 Methyltransferase domain BG11_954 PF10990 Protein of unknown function (DUF2809) BG11_956 PF03781 Sulfatase-modifying factor enzyme 1 BG11_957 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG11_958 PF18416 N-acetylglucosamine binding protein domain 2 BG11_958 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BG11_959 PF13673 Acetyltransferase (GNAT) domain BG11_96 PF01925 Sulfite exporter TauE/SafE BG11_960 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BG11_963 PF00574 Clp protease BG11_964 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BG11_965 PF00005 ABC transporter BG11_965 PF00571 CBS domain BG11_966 PF00528 Binding-protein-dependent transport system inner membrane component BG11_974 PF04229 GrpB protein BG11_974 PF13673 Acetyltransferase (GNAT) domain BG11_975 PF00106 short chain dehydrogenase BG11_977 PF00676 Dehydrogenase E1 component BG11_978 PF02779 Transketolase, pyrimidine binding domain BG11_978 PF02780 Transketolase, C-terminal domain BG11_979 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG11_979 PF00364 Biotin-requiring enzyme BG11_979 PF02817 e3 binding domain BG11_98 PF00293 NUDIX domain BG11_98 PF13344 Haloacid dehalogenase-like hydrolase BG11_980 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG11_980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG11_984 PF00455 DeoR C terminal sensor domain BG11_984 PF08220 DeoR-like helix-turn-helix domain BG11_985 PF13302 Acetyltransferase (GNAT) domain BG11_988 PF02954 Bacterial regulatory protein, Fis family BG11_988 PF01590 GAF domain BG11_988 PF00158 Sigma-54 interaction domain BG11_99 PF04172 LrgB-like family BG11_992 PF08359 YsiA-like protein, C-terminal region BG11_992 PF00440 Bacterial regulatory proteins, tetR family BG11_993 PF00266 Aminotransferase class-V BG11_994 PF04199 Putative cyclase BG11_995 PF03301 Tryptophan 2,3-dioxygenase BG11_998 PF07486 Cell Wall Hydrolase BG11_998 PF01471 Putative peptidoglycan binding domain BG11_999 PF03413 Peptidase propeptide and YPEB domain BG11_999 PF14620 YpeB sporulation