locus-tag class description BF35_10 PF01569 PAP2 superfamily BF35_1000 PF10787 Uncharacterised protein from bacillus cereus group BF35_1003 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1005 PF00005 ABC transporter BF35_1005 PF08402 TOBE domain BF35_1011 PF08141 Small acid-soluble spore protein H family BF35_1012 PF04203 Sortase domain BF35_1013 PF04203 Sortase domain BF35_1014 PF05738 Cna protein B-type domain BF35_1014 PF17802 Prealbumin-like fold domain BF35_1014 PF05737 Collagen binding domain BF35_1019 PF03992 Antibiotic biosynthesis monooxygenase BF35_1025 PF02272 DHHA1 domain BF35_1025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF35_1025 PF01411 tRNA synthetases class II (A) BF35_1026 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF35_1026 PF00460 Flagella basal body rod protein BF35_1027 PF00448 SRP54-type protein, GTPase domain BF35_1028 PF00771 FHIPEP family BF35_1029 PF01312 FlhB HrpN YscU SpaS Family BF35_1031 PF01313 Bacterial export proteins, family 3 BF35_1032 PF00813 FliP family BF35_1034 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF35_1034 PF04509 CheC-like family BF35_1035 PF02154 Flagellar motor switch protein FliM BF35_1035 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF35_1037 PF01464 Transglycosylase SLT domain BF35_1038 PF00700 Bacterial flagellin C-terminal helical region BF35_1038 PF00669 Bacterial flagellin N-terminal helical region BF35_1040 PF12181 DNA binding domain of the motility gene repressor (MogR) BF35_1041 PF00072 Response regulator receiver domain BF35_1041 PF01584 CheW-like domain BF35_1044 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF35_1044 PF00460 Flagella basal body rod protein BF35_1044 PF07559 Flagellar basal body protein FlaE BF35_1048 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF35_1048 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF35_1048 PF18269 T3SS EscN ATPase C-terminal domain BF35_1050 PF01706 FliG C-terminal domain BF35_1050 PF14841 FliG middle domain BF35_1050 PF14842 FliG N-terminal domain BF35_1051 PF01514 Secretory protein of YscJ/FliF family BF35_1051 PF08345 Flagellar M-ring protein C-terminal BF35_1052 PF02049 Flagellar hook-basal body complex protein FliE BF35_1053 PF00460 Flagella basal body rod protein BF35_1053 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF35_1054 PF00460 Flagella basal body rod protein BF35_1057 PF07195 Flagellar hook-associated protein 2 C-terminus BF35_1057 PF07196 Flagellin hook IN motif BF35_1057 PF02465 Flagellar hook-associated protein 2 N-terminus BF35_1058 PF00700 Bacterial flagellin C-terminal helical region BF35_1058 PF00669 Bacterial flagellin N-terminal helical region BF35_1059 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF35_1059 PF00460 Flagella basal body rod protein BF35_1063 PF01739 CheR methyltransferase, SAM binding domain BF35_1063 PF03705 CheR methyltransferase, all-alpha domain BF35_1066 PF04509 CheC-like family BF35_1066 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF35_1067 PF01627 Hpt domain BF35_1067 PF02895 Signal transducing histidine kinase, homodimeric domain BF35_1067 PF07194 P2 response regulator binding domain BF35_1067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1067 PF01584 CheW-like domain BF35_1068 PF00072 Response regulator receiver domain BF35_1069 PF00691 OmpA family BF35_1069 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF35_107 PF14873 N-terminal domain of BNR-repeat neuraminidase BF35_107 PF13859 BNR repeat-like domain BF35_1070 PF01618 MotA/TolQ/ExbB proton channel family BF35_1072 PF17209 Hfq protein BF35_1076 PF07690 Major Facilitator Superfamily BF35_108 PF01510 N-acetylmuramoyl-L-alanine amidase BF35_1081 PF00881 Nitroreductase family BF35_1083 PF02698 DUF218 domain BF35_1084 PF04239 Protein of unknown function (DUF421) BF35_1086 PF13411 MerR HTH family regulatory protein BF35_1086 PF06445 GyrI-like small molecule binding domain BF35_1087 PF17770 Ribonuclease J C-terminal domain BF35_1087 PF00753 Metallo-beta-lactamase superfamily BF35_1087 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF35_1088 PF00999 Sodium/hydrogen exchanger family BF35_1090 PF00202 Aminotransferase class-III BF35_1091 PF00474 Sodium:solute symporter family BF35_1092 PF04341 Protein of unknown function, DUF485 BF35_1095 PF01810 LysE type translocator BF35_1096 PF08892 YqcI/YcgG family BF35_1097 PF00313 'Cold-shock' DNA-binding domain BF35_1102 PF01263 Aldose 1-epimerase BF35_1103 PF13456 Reverse transcriptase-like BF35_1107 PF18014 Acetyltransferase (GNAT) domain BF35_1107 PF13673 Acetyltransferase (GNAT) domain BF35_1110 PF00534 Glycosyl transferases group 1 BF35_1110 PF13439 Glycosyltransferase Family 4 BF35_1111 PF00535 Glycosyl transferase family 2 BF35_1114 PF02397 Bacterial sugar transferase BF35_1117 PF01757 Acyltransferase family BF35_1119 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF35_1119 PF01367 5'-3' exonuclease, C-terminal SAM fold BF35_1120 PF00689 Cation transporting ATPase, C-terminus BF35_1120 PF00690 Cation transporter/ATPase, N-terminus BF35_1122 PF03738 Glutathionylspermidine synthase preATP-grasp BF35_1125 PF00581 Rhodanese-like domain BF35_1126 PF10752 Protein of unknown function (DUF2533) BF35_1127 PF00583 Acetyltransferase (GNAT) family BF35_1129 PF00350 Dynamin family BF35_1131 PF04235 Protein of unknown function (DUF418) BF35_1132 PF00860 Permease family BF35_1133 PF00156 Phosphoribosyl transferase domain BF35_1134 PF00557 Metallopeptidase family M24 BF35_1136 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BF35_1137 PF13307 Helicase C-terminal domain BF35_1139 PF02926 THUMP domain BF35_1139 PF01170 Putative RNA methylase family UPF0020 BF35_1140 PF05103 DivIVA protein BF35_1141 PF06908 YspA SLOG family BF35_1147 PF10720 Protein of unknown function (DUF2515) BF35_1148 PF03838 Recombination protein U BF35_1152 PF10576 Iron-sulfur binding domain of endonuclease III BF35_1152 PF00633 Helix-hairpin-helix motif BF35_1152 PF00730 HhH-GPD superfamily base excision DNA repair protein BF35_1153 PF07261 Replication initiation and membrane attachment BF35_1154 PF00155 Aminotransferase class I and II BF35_1156 PF14084 Protein of unknown function (DUF4264) BF35_1157 PF13307 Helicase C-terminal domain BF35_1157 PF04851 Type III restriction enzyme, res subunit BF35_1157 PF00929 Exonuclease BF35_1158 PF02261 Aspartate decarboxylase BF35_1159 PF02569 Pantoate-beta-alanine ligase BF35_1160 PF02548 Ketopantoate hydroxymethyltransferase BF35_1162 PF03099 Biotin/lipoate A/B protein ligase family BF35_1162 PF02237 Biotin protein ligase C terminal domain BF35_1162 PF08279 HTH domain BF35_1163 PF01743 Poly A polymerase head domain BF35_1163 PF12627 Probable RNA and SrmB- binding site of polymerase A BF35_1163 PF13735 tRNA nucleotidyltransferase domain 2 putative BF35_1164 PF13439 Glycosyltransferase Family 4 BF35_1164 PF00534 Glycosyl transferases group 1 BF35_1165 PF02585 GlcNAc-PI de-N-acetylase BF35_1166 PF02142 MGS-like domain BF35_1167 PF05173 Dihydrodipicolinate reductase, C-terminus BF35_1167 PF01113 Dihydrodipicolinate reductase, N-terminus BF35_1168 PF03819 MazG nucleotide pyrophosphohydrolase domain BF35_1169 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_1169 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_1171 PF04298 Putative neutral zinc metallopeptidase BF35_1172 PF09577 Sporulation protein YpjB (SpoYpjB) BF35_1174 PF07187 Protein of unknown function (DUF1405) BF35_1175 PF00032 Cytochrome b(C-terminal)/b6/petD BF35_1175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF35_1176 PF00033 Cytochrome b/b6/petB BF35_1177 PF00355 Rieske [2Fe-2S] domain BF35_1178 PF10673 Protein of unknown function (DUF2487) BF35_1179 PF08864 UPF0302 domain BF35_1179 PF08858 IDEAL domain BF35_1181 PF00155 Aminotransferase class I and II BF35_1182 PF01761 3-dehydroquinate synthase BF35_1183 PF01264 Chorismate synthase BF35_1184 PF00334 Nucleoside diphosphate kinase BF35_1185 PF00348 Polyprenyl synthetase BF35_1186 PF01209 ubiE/COQ5 methyltransferase family BF35_1187 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BF35_1188 PF01227 GTP cyclohydrolase I BF35_1189 PF00216 Bacterial DNA-binding protein BF35_1190 PF09547 Stage IV sporulation protein A (spore_IV_A) BF35_1192 PF10966 Protein of unknown function (DUF2768) BF35_1194 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF35_1194 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF35_1195 PF01926 50S ribosome-binding GTPase BF35_1195 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF35_1197 PF14045 YIEGIA protein BF35_1199 PF14140 YpzI-like protein BF35_1200 PF01070 FMN-dependent dehydrogenase BF35_1201 PF00575 S1 RNA binding domain BF35_1202 PF02224 Cytidylate kinase BF35_1204 PF00710 Asparaginase, N-terminal BF35_1204 PF17763 Glutaminase/Asparaginase C-terminal domain BF35_1208 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF35_1208 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF35_1209 PF05389 Negative regulator of genetic competence (MecA) BF35_121 PF00574 Clp protease BF35_1210 PF02310 B12 binding domain BF35_1210 PF13411 MerR HTH family regulatory protein BF35_1210 PF02607 B12 binding domain BF35_1211 PF00149 Calcineurin-like phosphoesterase BF35_1213 PF02517 CPBP intramembrane metalloprotease BF35_1214 PF00271 Helicase conserved C-terminal domain BF35_1214 PF00270 DEAD/DEAH box helicase BF35_1217 PF12822 ECF transporter, substrate-specific component BF35_1219 PF01551 Peptidase family M23 BF35_1220 PF01923 Cobalamin adenosyltransferase BF35_1221 PF00512 His Kinase A (phospho-acceptor) domain BF35_1221 PF00989 PAS fold BF35_1221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1221 PF00672 HAMP domain BF35_1221 PF18698 Histidine kinase sensor domain BF35_1222 PF00072 Response regulator receiver domain BF35_1222 PF00486 Transcriptional regulatory protein, C terminal BF35_1223 PF01578 Cytochrome C assembly protein BF35_1224 PF05140 ResB-like family BF35_1225 PF00578 AhpC/TSA family BF35_1226 PF00849 RNA pseudouridylate synthase BF35_1226 PF01479 S4 domain BF35_1227 PF07670 Nucleoside recognition BF35_1228 PF07670 Nucleoside recognition BF35_1229 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_1229 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_1230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF35_1230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF35_1233 PF03706 Lysylphosphatidylglycerol synthase TM region BF35_1233 PF09924 Uncharacterised conserved protein (DUF2156) BF35_1235 PF01048 Phosphorylase superfamily BF35_1236 PF00989 PAS fold BF35_1236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1236 PF00512 His Kinase A (phospho-acceptor) domain BF35_1236 PF16736 Single Cache-like BF35_1237 PF00589 Phage integrase family BF35_1239 PF01904 Protein of unknown function DUF72 BF35_124 PF03354 Phage Terminase BF35_1240 PF00512 His Kinase A (phospho-acceptor) domain BF35_1240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1240 PF00989 PAS fold BF35_1243 PF00905 Penicillin binding protein transpeptidase domain BF35_1243 PF00912 Transglycosylase BF35_1244 PF01865 Protein of unknown function DUF47 BF35_1245 PF01384 Phosphate transporter family BF35_1246 PF01925 Sulfite exporter TauE/SafE BF35_1249 PF00970 Oxidoreductase FAD-binding domain BF35_1249 PF00175 Oxidoreductase NAD-binding domain BF35_1249 PF00042 Globin BF35_1254 PF01209 ubiE/COQ5 methyltransferase family BF35_1256 PF05525 Branched-chain amino acid transport protein BF35_1258 PF00196 Bacterial regulatory proteins, luxR family BF35_1258 PF00072 Response regulator receiver domain BF35_1259 PF07730 Histidine kinase BF35_1259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1259 PF00672 HAMP domain BF35_1260 PF09922 Cell wall-active antibiotics response 4TMS YvqF BF35_1263 PF03553 Na+/H+ antiporter family BF35_1265 PF00375 Sodium:dicarboxylate symporter family BF35_1267 PF00209 Sodium:neurotransmitter symporter family BF35_1269 PF01903 CbiX BF35_1270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF35_1272 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF35_1272 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF35_1274 PF14306 PUA-like domain BF35_1274 PF01747 ATP-sulfurylase BF35_1275 PF01507 Phosphoadenosine phosphosulfate reductase family BF35_1277 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF35_1277 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF35_1279 PF00884 Sulfatase BF35_1280 PF01066 CDP-alcohol phosphatidyltransferase BF35_1281 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF35_1281 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF35_1283 PF02811 PHP domain BF35_1284 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF35_1285 PF01502 Phosphoribosyl-AMP cyclohydrolase BF35_1286 PF00977 Histidine biosynthesis protein BF35_1287 PF00977 Histidine biosynthesis protein BF35_1288 PF00117 Glutamine amidotransferase class-I BF35_1289 PF00475 Imidazoleglycerol-phosphate dehydratase BF35_1290 PF00815 Histidinol dehydrogenase BF35_1291 PF01634 ATP phosphoribosyltransferase BF35_1292 PF13393 Histidyl-tRNA synthetase BF35_1293 PF00694 Aconitase C-terminal domain BF35_1294 PF00330 Aconitase family (aconitate hydratase) BF35_1295 PF00180 Isocitrate/isopropylmalate dehydrogenase BF35_1296 PF00682 HMGL-like BF35_1296 PF08502 LeuA allosteric (dimerisation) domain BF35_1297 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF35_1297 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF35_1298 PF10369 Small subunit of acetolactate synthase BF35_1298 PF01842 ACT domain BF35_1299 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_1299 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF35_1299 PF00205 Thiamine pyrophosphate enzyme, central domain BF35_1300 PF01063 Amino-transferase class IV BF35_1302 PF03698 Uncharacterised protein family (UPF0180) BF35_1304 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF35_1306 PF02386 Cation transport protein BF35_1307 PF00375 Sodium:dicarboxylate symporter family BF35_1309 PF01047 MarR family BF35_1312 PF02673 Bacitracin resistance protein BacA BF35_1313 PF01554 MatE BF35_1317 PF01636 Phosphotransferase enzyme family BF35_1320 PF00258 Flavodoxin BF35_1322 PF07687 Peptidase dimerisation domain BF35_1322 PF01546 Peptidase family M20/M25/M40 BF35_1324 PF00501 AMP-binding enzyme BF35_1324 PF13193 AMP-binding enzyme C-terminal domain BF35_1325 PF03062 MBOAT, membrane-bound O-acyltransferase family BF35_1326 PF00550 Phosphopantetheine attachment site BF35_1327 PF04914 DltD protein BF35_1328 PF03060 Nitronate monooxygenase BF35_1329 PF17676 LD-carboxypeptidase C-terminal domain BF35_1329 PF02016 LD-carboxypeptidase N-terminal domain BF35_1331 PF00857 Isochorismatase family BF35_1333 PF01037 Lrp/AsnC ligand binding domain BF35_1335 PF02517 CPBP intramembrane metalloprotease BF35_1337 PF00005 ABC transporter BF35_1339 PF00005 ABC transporter BF35_134 PF00082 Subtilase family BF35_1340 PF00392 Bacterial regulatory proteins, gntR family BF35_1341 PF00268 Ribonucleotide reductase, small chain BF35_1342 PF08343 Ribonucleotide reductase N-terminal BF35_1342 PF00317 Ribonucleotide reductase, all-alpha domain BF35_1342 PF02867 Ribonucleotide reductase, barrel domain BF35_1343 PF00317 Ribonucleotide reductase, all-alpha domain BF35_1343 PF02867 Ribonucleotide reductase, barrel domain BF35_1343 PF08343 Ribonucleotide reductase N-terminal BF35_1344 PF07972 NrdI Flavodoxin like BF35_1350 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BF35_1351 PF14489 QueF-like protein BF35_1352 PF04055 Radical SAM superfamily BF35_1353 PF01242 6-pyruvoyl tetrahydropterin synthase BF35_1354 PF06508 Queuosine biosynthesis protein QueC BF35_1355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1355 PF00512 His Kinase A (phospho-acceptor) domain BF35_1355 PF00989 PAS fold BF35_1355 PF13188 PAS domain BF35_1355 PF13426 PAS domain BF35_1357 PF12867 DinB superfamily BF35_1359 PF01047 MarR family BF35_1360 PF00512 His Kinase A (phospho-acceptor) domain BF35_1360 PF02743 Cache domain BF35_1360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1361 PF09388 Spo0E like sporulation regulatory protein BF35_1362 PF04748 Divergent polysaccharide deacetylase BF35_1364 PF00596 Class II Aldolase and Adducin N-terminal domain BF35_1365 PF00395 S-layer homology domain BF35_1365 PF01520 N-acetylmuramoyl-L-alanine amidase BF35_1367 PF00455 DeoR C terminal sensor domain BF35_1367 PF08220 DeoR-like helix-turn-helix domain BF35_1369 PF00266 Aminotransferase class-V BF35_137 PF00589 Phage integrase family BF35_1370 PF13419 Haloacid dehalogenase-like hydrolase BF35_1371 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1372 PF00005 ABC transporter BF35_1372 PF08402 TOBE domain BF35_1376 PF02386 Cation transport protein BF35_1378 PF00561 alpha/beta hydrolase fold BF35_1383 PF01575 MaoC like domain BF35_1384 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF35_1385 PF02386 Cation transport protein BF35_1386 PF03741 Integral membrane protein TerC family BF35_1387 PF01226 Formate/nitrite transporter BF35_1389 PF06750 Bacterial Peptidase A24 N-terminal domain BF35_1389 PF01478 Type IV leader peptidase family BF35_1390 PF02589 LUD domain BF35_1391 PF02589 LUD domain BF35_1391 PF11870 Domain of unknown function (DUF3390) BF35_1391 PF13183 4Fe-4S dicluster domain BF35_1392 PF02754 Cysteine-rich domain BF35_1393 PF00392 Bacterial regulatory proteins, gntR family BF35_1393 PF07729 FCD domain BF35_1394 PF07729 FCD domain BF35_1394 PF00392 Bacterial regulatory proteins, gntR family BF35_1395 PF18698 Histidine kinase sensor domain BF35_1395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1395 PF00672 HAMP domain BF35_1395 PF00989 PAS fold BF35_1395 PF00512 His Kinase A (phospho-acceptor) domain BF35_1396 PF00486 Transcriptional regulatory protein, C terminal BF35_1396 PF00072 Response regulator receiver domain BF35_1398 PF13556 PucR C-terminal helix-turn-helix domain BF35_1398 PF17853 GGDEF-like domain BF35_1398 PF05651 Putative sugar diacid recognition BF35_1399 PF02913 FAD linked oxidases, C-terminal domain BF35_1399 PF01565 FAD binding domain BF35_1400 PF02754 Cysteine-rich domain BF35_1400 PF13183 4Fe-4S dicluster domain BF35_1401 PF00188 Cysteine-rich secretory protein family BF35_1403 PF01479 S4 domain BF35_1403 PF00849 RNA pseudouridylate synthase BF35_1405 PF03176 MMPL family BF35_1407 PF13416 Bacterial extracellular solute-binding protein BF35_1408 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1409 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1410 PF08402 TOBE domain BF35_1410 PF00005 ABC transporter BF35_1411 PF00171 Aldehyde dehydrogenase family BF35_1413 PF05547 Immune inhibitor A peptidase M6 BF35_1415 PF08671 Anti-repressor SinI BF35_1415 PF01381 Helix-turn-helix BF35_1416 PF12389 Camelysin metallo-endopeptidase BF35_1418 PF12389 Camelysin metallo-endopeptidase BF35_1420 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_1420 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_1422 PF13649 Methyltransferase domain BF35_1436 PF01381 Helix-turn-helix BF35_1437 PF02779 Transketolase, pyrimidine binding domain BF35_1437 PF16870 2-oxoglutarate dehydrogenase C-terminal BF35_1437 PF00676 Dehydrogenase E1 component BF35_1438 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF35_1438 PF00364 Biotin-requiring enzyme BF35_1438 PF02817 e3 binding domain BF35_1441 PF00881 Nitroreductase family BF35_1445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF35_1445 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_1450 PF10042 Uncharacterized conserved protein (DUF2278) BF35_1451 PF02652 L-lactate permease BF35_1453 PF00290 Tryptophan synthase alpha chain BF35_1454 PF00291 Pyridoxal-phosphate dependent enzyme BF35_1455 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BF35_1456 PF00218 Indole-3-glycerol phosphate synthase BF35_1457 PF02885 Glycosyl transferase family, helical bundle domain BF35_1457 PF00591 Glycosyl transferase family, a/b domain BF35_1458 PF00117 Glutamine amidotransferase class-I BF35_1458 PF02885 Glycosyl transferase family, helical bundle domain BF35_1458 PF00591 Glycosyl transferase family, a/b domain BF35_1460 PF00474 Sodium:solute symporter family BF35_1461 PF02368 Bacterial Ig-like domain (group 2) BF35_1465 PF00756 Putative esterase BF35_1467 PF13673 Acetyltransferase (GNAT) domain BF35_1468 PF00580 UvrD/REP helicase N-terminal domain BF35_1468 PF13361 UvrD-like helicase C-terminal domain BF35_1471 PF07098 Protein of unknown function (DUF1360) BF35_1475 PF04321 RmlD substrate binding domain BF35_1476 PF16363 GDP-mannose 4,6 dehydratase BF35_1477 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF35_1478 PF00483 Nucleotidyl transferase BF35_148 PF18277 AbrB C-terminal domain BF35_148 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF35_1482 PF13181 Tetratricopeptide repeat BF35_1482 PF00535 Glycosyl transferase family 2 BF35_1484 PF05711 Macrocin-O-methyltransferase (TylF) BF35_1485 PF08241 Methyltransferase domain BF35_1486 PF00535 Glycosyl transferase family 2 BF35_1487 PF01098 Cell cycle protein BF35_1488 PF00149 Calcineurin-like phosphoesterase BF35_1490 PF00849 RNA pseudouridylate synthase BF35_1491 PF01513 ATP-NAD kinase BF35_1492 PF04607 Region found in RelA / SpoT proteins BF35_1494 PF01928 CYTH domain BF35_1495 PF01152 Bacterial-like globin BF35_1498 PF01432 Peptidase family M3 BF35_1498 PF08439 Oligopeptidase F BF35_150 PF01695 IstB-like ATP binding protein BF35_1500 PF13396 Phospholipase_D-nuclease N-terminal BF35_1500 PF13091 PLD-like domain BF35_1501 PF05389 Negative regulator of genetic competence (MecA) BF35_1502 PF03741 Integral membrane protein TerC family BF35_1503 PF03960 ArsC family BF35_1505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_1506 PF01554 MatE BF35_1507 PF00005 ABC transporter BF35_1507 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_1508 PF00005 ABC transporter BF35_1508 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_1509 PF12911 N-terminal TM domain of oligopeptide transport permease C BF35_1509 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1510 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1511 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_1513 PF00579 tRNA synthetases class I (W and Y) BF35_1514 PF12227 Protein of unknown function (DUF3603) BF35_1515 PF10026 Predicted Zn-dependent protease (DUF2268) BF35_1516 PF00109 Beta-ketoacyl synthase, N-terminal domain BF35_1516 PF02801 Beta-ketoacyl synthase, C-terminal domain BF35_1517 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF35_1517 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF35_1518 PF10815 ComZ BF35_1522 PF17871 AAA lid domain BF35_1522 PF02861 Clp amino terminal domain, pathogenicity island component BF35_1522 PF10431 C-terminal, D2-small domain, of ClpB protein BF35_1522 PF00004 ATPase family associated with various cellular activities (AAA) BF35_1522 PF07724 AAA domain (Cdc48 subfamily) BF35_1523 PF14168 YjzC-like protein BF35_1526 PF12758 Protein of unknown function (DUF3813) BF35_1527 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_1527 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_1529 PF00639 PPIC-type PPIASE domain BF35_1530 PF17783 CvfB-like winged helix domain BF35_1530 PF13509 S1 domain BF35_1531 PF04461 Protein of unknown function (DUF520) BF35_1533 PF00128 Alpha amylase, catalytic domain BF35_1534 PF00909 Ammonium Transporter Family BF35_1535 PF06628 Catalase-related immune-responsive BF35_1535 PF00199 Catalase BF35_1537 PF00733 Asparagine synthase BF35_1537 PF13537 Glutamine amidotransferase domain BF35_1539 PF07457 Protein of unknown function (DUF1516) BF35_1540 PF00202 Aminotransferase class-III BF35_1542 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF35_1543 PF09388 Spo0E like sporulation regulatory protein BF35_1544 PF10676 Spore germination protein gerPA/gerPF BF35_1545 PF10803 Spore germination GerPB BF35_1546 PF10737 Spore germination protein GerPC BF35_1548 PF10970 Spore germination protein GerPE BF35_1549 PF10676 Spore germination protein gerPA/gerPF BF35_1551 PF13361 UvrD-like helicase C-terminal domain BF35_1551 PF00580 UvrD/REP helicase N-terminal domain BF35_1551 PF12705 PD-(D/E)XK nuclease superfamily BF35_1552 PF13361 UvrD-like helicase C-terminal domain BF35_1552 PF12705 PD-(D/E)XK nuclease superfamily BF35_1557 PF10502 Signal peptidase, peptidase S26 BF35_1558 PF09335 SNARE associated Golgi protein BF35_1560 PF06338 ComK protein BF35_1563 PF00313 'Cold-shock' DNA-binding domain BF35_1565 PF00463 Isocitrate lyase family BF35_1566 PF01274 Malate synthase BF35_1567 PF00395 S-layer homology domain BF35_1569 PF00150 Cellulase (glycosyl hydrolase family 5) BF35_1569 PF00395 S-layer homology domain BF35_1569 PF03424 Carbohydrate binding domain (family 17/28) BF35_1570 PF00892 EamA-like transporter family BF35_1571 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_1571 PF00672 HAMP domain BF35_1571 PF02743 Cache domain BF35_1572 PF16491 CAAX prenyl protease N-terminal, five membrane helices BF35_1572 PF01435 Peptidase family M48 BF35_1577 PF00486 Transcriptional regulatory protein, C terminal BF35_1577 PF00072 Response regulator receiver domain BF35_1578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1578 PF00512 His Kinase A (phospho-acceptor) domain BF35_1580 PF12833 Helix-turn-helix domain BF35_1580 PF06445 GyrI-like small molecule binding domain BF35_1581 PF08281 Sigma-70, region 4 BF35_1581 PF04542 Sigma-70 region 2 BF35_1583 PF01966 HD domain BF35_1584 PF00149 Calcineurin-like phosphoesterase BF35_1585 PF12146 Serine aminopeptidase, S33 BF35_1586 PF00440 Bacterial regulatory proteins, tetR family BF35_1590 PF05593 RHS Repeat BF35_1591 PF01520 N-acetylmuramoyl-L-alanine amidase BF35_1591 PF00395 S-layer homology domain BF35_1593 PF00501 AMP-binding enzyme BF35_1593 PF13193 AMP-binding enzyme C-terminal domain BF35_1595 PF10437 Bacterial lipoate protein ligase C-terminus BF35_1595 PF03099 Biotin/lipoate A/B protein ligase family BF35_1596 PF12706 Beta-lactamase superfamily domain BF35_1597 PF14149 YhfH-like protein BF35_1598 PF00356 Bacterial regulatory proteins, lacI family BF35_1599 PF08279 HTH domain BF35_1599 PF13280 WYL domain BF35_160 PF00589 Phage integrase family BF35_160 PF14659 Phage integrase, N-terminal SAM-like domain BF35_1605 PF17932 Tetracyclin repressor-like, C-terminal domain BF35_1605 PF00440 Bacterial regulatory proteins, tetR family BF35_1612 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF35_1613 PF00912 Transglycosylase BF35_1613 PF00905 Penicillin binding protein transpeptidase domain BF35_1614 PF03992 Antibiotic biosynthesis monooxygenase BF35_1615 PF03703 Bacterial PH domain BF35_1616 PF03703 Bacterial PH domain BF35_1623 PF03703 Bacterial PH domain BF35_1624 PF03703 Bacterial PH domain BF35_1626 PF00440 Bacterial regulatory proteins, tetR family BF35_1626 PF17934 Tetracyclin repressor-like, C-terminal domain BF35_1628 PF12787 EcsC protein family BF35_1629 PF05975 Bacterial ABC transporter protein EcsB BF35_1630 PF00005 ABC transporter BF35_1631 PF01230 HIT domain BF35_1632 PF12732 YtxH-like protein BF35_1633 PF01047 MarR family BF35_1637 PF13538 UvrD-like helicase C-terminal domain BF35_164 PF03070 TENA/THI-4/PQQC family BF35_1641 PF08281 Sigma-70, region 4 BF35_1641 PF04542 Sigma-70 region 2 BF35_1646 PF01266 FAD dependent oxidoreductase BF35_1646 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BF35_1647 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF35_1647 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF35_1648 PF00230 Major intrinsic protein BF35_1649 PF04309 Glycerol-3-phosphate responsive antiterminator BF35_165 PF01820 D-ala D-ala ligase N-terminus BF35_165 PF07478 D-ala D-ala ligase C-terminus BF35_1653 PF08386 TAP-like protein BF35_1653 PF00561 alpha/beta hydrolase fold BF35_1655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_1656 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_166 PF00392 Bacterial regulatory proteins, gntR family BF35_166 PF00155 Aminotransferase class I and II BF35_1660 PF18801 response regulator aspartate phosphatase H, N terminal BF35_1662 PF13411 MerR HTH family regulatory protein BF35_1662 PF13152 Protein of unknown function (DUF3967) BF35_1664 PF00144 Beta-lactamase BF35_1665 PF01966 HD domain BF35_1665 PF01336 OB-fold nucleic acid binding domain BF35_1666 PF13514 AAA domain BF35_1667 PF00149 Calcineurin-like phosphoesterase BF35_167 PF03447 Homoserine dehydrogenase, NAD binding domain BF35_167 PF00742 Homoserine dehydrogenase BF35_167 PF01842 ACT domain BF35_1670 PF11121 Protein of unknown function (DUF2639) BF35_1672 PF00072 Response regulator receiver domain BF35_1672 PF00196 Bacterial regulatory proteins, luxR family BF35_1673 PF07730 Histidine kinase BF35_1673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1674 PF08240 Alcohol dehydrogenase GroES-like domain BF35_1674 PF00107 Zinc-binding dehydrogenase BF35_1678 PF01906 Putative heavy-metal-binding BF35_1683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1683 PF00072 Response regulator receiver domain BF35_1683 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF35_1683 PF01627 Hpt domain BF35_1683 PF00512 His Kinase A (phospho-acceptor) domain BF35_1684 PF03705 CheR methyltransferase, all-alpha domain BF35_1684 PF01739 CheR methyltransferase, SAM binding domain BF35_1685 PF13426 PAS domain BF35_1685 PF07228 Stage II sporulation protein E (SpoIIE) BF35_1687 PF04545 Sigma-70, region 4 BF35_1687 PF04539 Sigma-70 region 3 BF35_1687 PF04542 Sigma-70 region 2 BF35_1688 PF13581 Histidine kinase-like ATPase domain BF35_1689 PF01740 STAS domain BF35_1692 PF05532 CsbD-like BF35_1693 PF11181 Heat induced stress protein YflT BF35_1696 PF00395 S-layer homology domain BF35_1696 PF00150 Cellulase (glycosyl hydrolase family 5) BF35_1696 PF03424 Carbohydrate binding domain (family 17/28) BF35_1700 PF02368 Bacterial Ig-like domain (group 2) BF35_1700 PF00395 S-layer homology domain BF35_1702 PF01966 HD domain BF35_1702 PF00672 HAMP domain BF35_1705 PF18801 response regulator aspartate phosphatase H, N terminal BF35_1707 PF02082 Transcriptional regulator BF35_1708 PF02525 Flavodoxin-like fold BF35_1709 PF02733 Dak1 domain BF35_171 PF02687 FtsX-like permease family BF35_1711 PF02733 Dak1 domain BF35_1715 PF01066 CDP-alcohol phosphatidyltransferase BF35_172 PF00005 ABC transporter BF35_1728 PF07690 Major Facilitator Superfamily BF35_1731 PF01925 Sulfite exporter TauE/SafE BF35_1734 PF03796 DnaB-like helicase C terminal domain BF35_1734 PF00772 DnaB-like helicase N terminal domain BF35_1738 PF06445 GyrI-like small molecule binding domain BF35_1738 PF13411 MerR HTH family regulatory protein BF35_1741 PF00271 Helicase conserved C-terminal domain BF35_1741 PF04851 Type III restriction enzyme, res subunit BF35_1743 PF08463 EcoEI R protein C-terminal BF35_1743 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BF35_1743 PF04851 Type III restriction enzyme, res subunit BF35_1743 PF00271 Helicase conserved C-terminal domain BF35_1744 PF00293 NUDIX domain BF35_1745 PF03401 Tripartite tricarboxylate transporter family receptor BF35_1746 PF00072 Response regulator receiver domain BF35_1746 PF08279 HTH domain BF35_1746 PF12431 Transcriptional regulator BF35_1747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1747 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF35_1748 PF00083 Sugar (and other) transporter BF35_1754 PF02423 Ornithine cyclodeaminase/mu-crystallin family BF35_1755 PF05544 Proline racemase BF35_1756 PF11121 Protein of unknown function (DUF2639) BF35_1758 PF00395 S-layer homology domain BF35_1758 PF01520 N-acetylmuramoyl-L-alanine amidase BF35_1759 PF05343 M42 glutamyl aminopeptidase BF35_1763 PF00378 Enoyl-CoA hydratase/isomerase BF35_1765 PF03062 MBOAT, membrane-bound O-acyltransferase family BF35_1767 PF00395 S-layer homology domain BF35_1769 PF01943 Polysaccharide biosynthesis protein BF35_1769 PF14667 Polysaccharide biosynthesis C-terminal domain BF35_177 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_1770 PF01043 SecA preprotein cross-linking domain BF35_1770 PF07517 SecA DEAD-like domain BF35_1770 PF07516 SecA Wing and Scaffold domain BF35_1773 PF00916 Sulfate permease family BF35_1773 PF01740 STAS domain BF35_1777 PF00501 AMP-binding enzyme BF35_1777 PF13193 AMP-binding enzyme C-terminal domain BF35_1778 PF04055 Radical SAM superfamily BF35_1779 PF01471 Putative peptidoglycan binding domain BF35_1779 PF01510 N-acetylmuramoyl-L-alanine amidase BF35_178 PF00072 Response regulator receiver domain BF35_178 PF00486 Transcriptional regulatory protein, C terminal BF35_1780 PF10425 C-terminus of bacterial fibrinogen-binding adhesin BF35_1780 PF17210 SdrD B-like domain BF35_1780 PF00746 LPXTG cell wall anchor motif BF35_1780 PF17961 Bacterial Ig domain BF35_1780 PF04650 YSIRK type signal peptide BF35_1782 PF02245 Methylpurine-DNA glycosylase (MPG) BF35_1783 PF03306 Alpha-acetolactate decarboxylase BF35_1784 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF35_1784 PF00205 Thiamine pyrophosphate enzyme, central domain BF35_1784 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_1787 PF06133 Control of competence regulator ComK, YlbF/YmcA BF35_1788 PF04286 Protein of unknown function (DUF445) BF35_179 PF03069 Acetamidase/Formamidase family BF35_1790 PF14398 YheC/D like ATP-grasp BF35_1792 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF35_1793 PF00005 ABC transporter BF35_1794 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1795 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF35_1796 PF00664 ABC transporter transmembrane region BF35_1796 PF00005 ABC transporter BF35_1797 PF00664 ABC transporter transmembrane region BF35_1797 PF00005 ABC transporter BF35_1798 PF00171 Aldehyde dehydrogenase family BF35_18 PF01266 FAD dependent oxidoreductase BF35_180 PF07486 Cell Wall Hydrolase BF35_1800 PF01177 Asp/Glu/Hydantoin racemase BF35_1801 PF13520 Amino acid permease BF35_1804 PF01965 DJ-1/PfpI family BF35_1806 PF07690 Major Facilitator Superfamily BF35_1807 PF12793 Sugar transport-related sRNA regulator N-term BF35_1807 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_1809 PF02525 Flavodoxin-like fold BF35_1811 PF01638 HxlR-like helix-turn-helix BF35_1812 PF07690 Major Facilitator Superfamily BF35_1813 PF17934 Tetracyclin repressor-like, C-terminal domain BF35_1813 PF00440 Bacterial regulatory proteins, tetR family BF35_1814 PF00893 Small Multidrug Resistance protein BF35_1815 PF00893 Small Multidrug Resistance protein BF35_1817 PF01037 Lrp/AsnC ligand binding domain BF35_1818 PF00892 EamA-like transporter family BF35_182 PF01921 tRNA synthetases class I (K) BF35_1821 PF07681 DoxX BF35_1823 PF02378 Phosphotransferase system, EIIC BF35_1823 PF00367 phosphotransferase system, EIIB BF35_1824 PF13580 SIS domain BF35_1825 PF01418 Helix-turn-helix domain, rpiR family BF35_1825 PF01380 SIS domain BF35_1827 PF00999 Sodium/hydrogen exchanger family BF35_1828 PF13520 Amino acid permease BF35_1835 PF09335 SNARE associated Golgi protein BF35_1837 PF02735 Ku70/Ku80 beta-barrel domain BF35_184 PF08450 SMP-30/Gluconolactonase/LRE-like region BF35_1840 PF11007 Spore coat associated protein JA (CotJA) BF35_1841 PF12652 CotJB protein BF35_1842 PF05067 Manganese containing catalase BF35_1843 PF05525 Branched-chain amino acid transport protein BF35_1846 PF09529 Integral membrane protein (intg_mem_TP0381) BF35_1848 PF00005 ABC transporter BF35_1849 PF02687 FtsX-like permease family BF35_1849 PF12704 MacB-like periplasmic core domain BF35_1851 PF07690 Major Facilitator Superfamily BF35_1853 PF01022 Bacterial regulatory protein, arsR family BF35_1855 PF00248 Aldo/keto reductase family BF35_1856 PF07690 Major Facilitator Superfamily BF35_1857 PF01817 Chorismate mutase type II BF35_1857 PF00793 DAHP synthetase I family BF35_1858 PF07690 Major Facilitator Superfamily BF35_1859 PF00483 Nucleotidyl transferase BF35_186 PF08245 Mur ligase middle domain BF35_186 PF02875 Mur ligase family, glutamate ligase domain BF35_186 PF01225 Mur ligase family, catalytic domain BF35_1860 PF16363 GDP-mannose 4,6 dehydratase BF35_1864 PF06725 3D domain BF35_1864 PF01476 LysM domain BF35_1867 PF02378 Phosphotransferase system, EIIC BF35_1868 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF35_1869 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF35_187 PF08241 Methyltransferase domain BF35_1870 PF08279 HTH domain BF35_1870 PF05043 Mga helix-turn-helix domain BF35_1870 PF00874 PRD domain BF35_1870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF35_1872 PF07690 Major Facilitator Superfamily BF35_1873 PF02690 Na+/Pi-cotransporter BF35_1874 PF08240 Alcohol dehydrogenase GroES-like domain BF35_1874 PF00107 Zinc-binding dehydrogenase BF35_1875 PF03816 Cell envelope-related transcriptional attenuator domain BF35_1877 PF01925 Sulfite exporter TauE/SafE BF35_1878 PF13686 DsrE/DsrF/DrsH-like family BF35_188 PF04239 Protein of unknown function (DUF421) BF35_1880 PF01206 Sulfurtransferase TusA BF35_1880 PF00581 Rhodanese-like domain BF35_1882 PF01206 Sulfurtransferase TusA BF35_1883 PF00753 Metallo-beta-lactamase superfamily BF35_1883 PF00581 Rhodanese-like domain BF35_1884 PF00581 Rhodanese-like domain BF35_1884 PF01206 Sulfurtransferase TusA BF35_1885 PF02583 Metal-sensitive transcriptional repressor BF35_1886 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF35_1886 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_1891 PF04293 SpoVR like protein BF35_1892 PF00881 Nitroreductase family BF35_1894 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_1896 PF03845 Spore germination protein BF35_1898 PF14148 YhdB-like protein BF35_1899 PF02600 Disulfide bond formation protein DsbB BF35_1900 PF00085 Thioredoxin BF35_1902 PF00356 Bacterial regulatory proteins, lacI family BF35_1902 PF13407 Periplasmic binding protein domain BF35_1903 PF02378 Phosphotransferase system, EIIC BF35_1903 PF00367 phosphotransferase system, EIIB BF35_1904 PF08244 Glycosyl hydrolases family 32 C terminal BF35_1904 PF00251 Glycosyl hydrolases family 32 N-terminal domain BF35_1905 PF00294 pfkB family carbohydrate kinase BF35_1907 PF03734 L,D-transpeptidase catalytic domain BF35_1907 PF17969 L,D-transpeptidase C-terminal domain BF35_1909 PF00860 Permease family BF35_1912 PF01047 MarR family BF35_1913 PF07690 Major Facilitator Superfamily BF35_1914 PF02702 Osmosensitive K+ channel His kinase sensor domain BF35_1915 PF02669 K+-transporting ATPase, c chain BF35_1917 PF03814 Potassium-transporting ATPase A subunit BF35_192 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal BF35_192 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal BF35_1921 PF08543 Phosphomethylpyrimidine kinase BF35_1922 PF00899 ThiF family BF35_1923 PF05690 Thiazole biosynthesis protein ThiG BF35_1924 PF02597 ThiS family BF35_1925 PF01266 FAD dependent oxidoreductase BF35_1926 PF02581 Thiamine monophosphate synthase BF35_1927 PF09084 NMT1/THI5 like BF35_1928 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1929 PF00005 ABC transporter BF35_193 PF00392 Bacterial regulatory proteins, gntR family BF35_193 PF00155 Aminotransferase class I and II BF35_1930 PF03070 TENA/THI-4/PQQC family BF35_1931 PF08239 Bacterial SH3 domain BF35_1931 PF00246 Zinc carboxypeptidase BF35_1935 PF00571 CBS domain BF35_1959 PF00873 AcrB/AcrD/AcrF family BF35_196 PF12833 Helix-turn-helix domain BF35_1961 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1962 PF00528 Binding-protein-dependent transport system inner membrane component BF35_1963 PF12849 PBP superfamily domain BF35_1964 PF04023 FeoA domain BF35_1964 PF07664 Ferrous iron transport protein B C terminus BF35_1964 PF17910 FeoB cytosolic helical domain BF35_1964 PF02421 Ferrous iron transport protein B BF35_1964 PF07670 Nucleoside recognition BF35_1965 PF17910 FeoB cytosolic helical domain BF35_1965 PF02421 Ferrous iron transport protein B BF35_1965 PF07664 Ferrous iron transport protein B C terminus BF35_1965 PF07670 Nucleoside recognition BF35_1966 PF07670 Nucleoside recognition BF35_1966 PF02421 Ferrous iron transport protein B BF35_1966 PF17910 FeoB cytosolic helical domain BF35_1966 PF07664 Ferrous iron transport protein B C terminus BF35_1967 PF05504 Spore germination B3/ GerAC like, C-terminal BF35_1968 PF03845 Spore germination protein BF35_1969 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_1970 PF00474 Sodium:solute symporter family BF35_1972 PF07687 Peptidase dimerisation domain BF35_1972 PF01546 Peptidase family M20/M25/M40 BF35_1973 PF13529 Peptidase_C39 like family BF35_1974 PF00324 Amino acid permease BF35_1975 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF35_1976 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF35_1977 PF00510 Cytochrome c oxidase subunit III BF35_1979 PF00999 Sodium/hydrogen exchanger family BF35_1979 PF02254 TrkA-N domain BF35_1979 PF02080 TrkA-C domain BF35_1980 PF13673 Acetyltransferase (GNAT) domain BF35_1983 PF00860 Permease family BF35_1984 PF00324 Amino acid permease BF35_1987 PF05525 Branched-chain amino acid transport protein BF35_1988 PF00854 POT family BF35_1989 PF04203 Sortase domain BF35_1991 PF01381 Helix-turn-helix BF35_1992 PF07501 G5 domain BF35_1992 PF06725 3D domain BF35_1992 PF03990 G5-linked-Ubiquitin-like domain BF35_1993 PF00672 HAMP domain BF35_1993 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_1993 PF02743 Cache domain BF35_1994 PF02673 Bacitracin resistance protein BacA BF35_1999 PF03372 Endonuclease/Exonuclease/phosphatase family BF35_2 PF00561 alpha/beta hydrolase fold BF35_2000 PF00882 Zinc dependent phospholipase C BF35_2002 PF08240 Alcohol dehydrogenase GroES-like domain BF35_2002 PF00107 Zinc-binding dehydrogenase BF35_2004 PF05547 Immune inhibitor A peptidase M6 BF35_2005 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF35_2006 PF13407 Periplasmic binding protein domain BF35_2007 PF02653 Branched-chain amino acid transport system / permease component BF35_2008 PF00005 ABC transporter BF35_2009 PF05025 RbsD / FucU transport protein family BF35_201 PF13847 Methyltransferase domain BF35_2010 PF00294 pfkB family carbohydrate kinase BF35_2011 PF00356 Bacterial regulatory proteins, lacI family BF35_2012 PF07690 Major Facilitator Superfamily BF35_2013 PF01047 MarR family BF35_2014 PF07690 Major Facilitator Superfamily BF35_2015 PF00005 ABC transporter BF35_2015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_2016 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_2016 PF00005 ABC transporter BF35_2017 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2018 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2019 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_202 PF01638 HxlR-like helix-turn-helix BF35_2021 PF00582 Universal stress protein family BF35_2022 PF01740 STAS domain BF35_2022 PF00916 Sulfate permease family BF35_2024 PF00486 Transcriptional regulatory protein, C terminal BF35_2024 PF00072 Response regulator receiver domain BF35_2025 PF00672 HAMP domain BF35_2025 PF00989 PAS fold BF35_2025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2025 PF18698 Histidine kinase sensor domain BF35_2025 PF00512 His Kinase A (phospho-acceptor) domain BF35_2026 PF01872 RibD C-terminal domain BF35_2027 PF13280 WYL domain BF35_2027 PF08279 HTH domain BF35_2029 PF04542 Sigma-70 region 2 BF35_2029 PF08281 Sigma-70, region 4 BF35_2032 PF00324 Amino acid permease BF35_2033 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2034 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2035 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF35_2036 PF00005 ABC transporter BF35_2037 PF01235 Sodium:alanine symporter family BF35_2038 PF01636 Phosphotransferase enzyme family BF35_2040 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_2044 PF16657 Maltogenic Amylase, C-terminal domain BF35_2044 PF00128 Alpha amylase, catalytic domain BF35_2045 PF02378 Phosphotransferase system, EIIC BF35_2045 PF00367 phosphotransferase system, EIIB BF35_2046 PF00392 Bacterial regulatory proteins, gntR family BF35_2046 PF07702 UTRA domain BF35_2047 PF13520 Amino acid permease BF35_2048 PF03707 Bacterial signalling protein N terminal repeat BF35_2048 PF00990 Diguanylate cyclase, GGDEF domain BF35_2048 PF00563 EAL domain BF35_205 PF07690 Major Facilitator Superfamily BF35_2051 PF13091 PLD-like domain BF35_2051 PF13396 Phospholipase_D-nuclease N-terminal BF35_2052 PF07728 AAA domain (dynein-related subfamily) BF35_2055 PF00293 NUDIX domain BF35_2055 PF13344 Haloacid dehalogenase-like hydrolase BF35_2056 PF01370 NAD dependent epimerase/dehydratase family BF35_2057 PF00155 Aminotransferase class I and II BF35_2058 PF08241 Methyltransferase domain BF35_2059 PF00005 ABC transporter BF35_206 PF00376 MerR family regulatory protein BF35_206 PF09278 MerR, DNA binding BF35_2060 PF01032 FecCD transport family BF35_2061 PF01032 FecCD transport family BF35_2062 PF01497 Periplasmic binding protein BF35_2063 PF00854 POT family BF35_2064 PF08141 Small acid-soluble spore protein H family BF35_2065 PF01022 Bacterial regulatory protein, arsR family BF35_2066 PF02652 L-lactate permease BF35_2067 PF00206 Lyase BF35_2067 PF10415 Fumarase C C-terminus BF35_2068 PF03471 Transporter associated domain BF35_2068 PF00571 CBS domain BF35_2068 PF01595 Cyclin M transmembrane N-terminal domain BF35_2069 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_207 PF00144 Beta-lactamase BF35_2070 PF07662 Na+ dependent nucleoside transporter C-terminus BF35_2070 PF01773 Na+ dependent nucleoside transporter N-terminus BF35_2071 PF03816 Cell envelope-related transcriptional attenuator domain BF35_2072 PF04294 VanW like protein BF35_2076 PF03413 Peptidase propeptide and YPEB domain BF35_2076 PF01447 Thermolysin metallopeptidase, catalytic domain BF35_2076 PF07504 Fungalysin/Thermolysin Propeptide Motif BF35_2076 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF35_2079 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BF35_2079 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF35_2079 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BF35_2080 PF00403 Heavy-metal-associated domain BF35_2081 PF01022 Bacterial regulatory protein, arsR family BF35_2082 PF13520 Amino acid permease BF35_2083 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF35_2083 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF35_2085 PF07849 Protein of unknown function (DUF1641) BF35_2086 PF00037 4Fe-4S binding domain BF35_2086 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF35_2086 PF00384 Molybdopterin oxidoreductase BF35_2086 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF35_2086 PF01568 Molydopterin dinucleotide binding domain BF35_2087 PF02634 FdhD/NarQ family BF35_2088 PF00583 Acetyltransferase (GNAT) family BF35_2088 PF13508 Acetyltransferase (GNAT) domain BF35_2090 PF00072 Response regulator receiver domain BF35_2090 PF00486 Transcriptional regulatory protein, C terminal BF35_2091 PF00989 PAS fold BF35_2091 PF00672 HAMP domain BF35_2091 PF00512 His Kinase A (phospho-acceptor) domain BF35_2091 PF18698 Histidine kinase sensor domain BF35_2091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2093 PF00155 Aminotransferase class I and II BF35_2093 PF00392 Bacterial regulatory proteins, gntR family BF35_2094 PF00892 EamA-like transporter family BF35_2096 PF03949 Malic enzyme, NAD binding domain BF35_2096 PF00390 Malic enzyme, N-terminal domain BF35_2097 PF03390 2-hydroxycarboxylate transporter family BF35_2098 PF00072 Response regulator receiver domain BF35_2099 PF00989 PAS fold BF35_2099 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF35_2099 PF17203 Single cache domain 3 BF35_2099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_210 PF00005 ABC transporter BF35_210 PF17755 UvrA DNA-binding domain BF35_210 PF17760 UvrA interaction domain BF35_2100 PF02743 Cache domain BF35_2100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_2100 PF00672 HAMP domain BF35_2101 PF13529 Peptidase_C39 like family BF35_2103 PF00512 His Kinase A (phospho-acceptor) domain BF35_2103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2104 PF00486 Transcriptional regulatory protein, C terminal BF35_2104 PF00072 Response regulator receiver domain BF35_2109 PF03600 Citrate transporter BF35_2110 PF00072 Response regulator receiver domain BF35_2110 PF12431 Transcriptional regulator BF35_2111 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF35_2111 PF17203 Single cache domain 3 BF35_2111 PF00989 PAS fold BF35_2111 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2112 PF02743 Cache domain BF35_2112 PF00672 HAMP domain BF35_2112 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_2113 PF00672 HAMP domain BF35_2113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_2113 PF02743 Cache domain BF35_2114 PF15975 Flotillin BF35_2114 PF01145 SPFH domain / Band 7 family BF35_2116 PF01752 Collagenase BF35_2116 PF18496 Collagenase G catalytic helper subdomain BF35_2116 PF08453 Peptidase family M9 N-terminal BF35_2117 PF02028 BCCT, betaine/carnitine/choline family transporter BF35_2120 PF04285 Protein of unknown function (DUF444) BF35_2121 PF08298 PrkA AAA domain BF35_2121 PF06798 PrkA serine protein kinase C-terminal domain BF35_2123 PF03707 Bacterial signalling protein N terminal repeat BF35_2123 PF00990 Diguanylate cyclase, GGDEF domain BF35_2123 PF00563 EAL domain BF35_2124 PF00588 SpoU rRNA Methylase family BF35_2125 PF12671 Putative amidase domain BF35_2126 PF08331 Domain of unknown function (DUF1730) BF35_213 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF35_213 PF01447 Thermolysin metallopeptidase, catalytic domain BF35_213 PF07504 Fungalysin/Thermolysin Propeptide Motif BF35_213 PF03413 Peptidase propeptide and YPEB domain BF35_2130 PF13462 Thioredoxin BF35_2131 PF00912 Transglycosylase BF35_2131 PF00905 Penicillin binding protein transpeptidase domain BF35_2132 PF13344 Haloacid dehalogenase-like hydrolase BF35_2132 PF00293 NUDIX domain BF35_2133 PF01709 Transcriptional regulator BF35_2154 PF11023 Zinc-ribbon containing domain BF35_2155 PF01475 Ferric uptake regulator family BF35_2156 PF00578 AhpC/TSA family BF35_2157 PF07885 Ion channel BF35_2160 PF00005 ABC transporter BF35_2161 PF00202 Aminotransferase class-III BF35_2162 PF01493 GXGXG motif BF35_2162 PF04898 Glutamate synthase central domain BF35_2162 PF00310 Glutamine amidotransferases class-II BF35_2162 PF01645 Conserved region in glutamate synthase BF35_2163 PF06081 Aromatic acid exporter family member 1 BF35_2164 PF00005 ABC transporter BF35_2164 PF00664 ABC transporter transmembrane region BF35_2165 PF04167 Protein of unknown function (DUF402) BF35_2166 PF14182 YgaB-like protein BF35_2167 PF04259 Small, acid-soluble spore protein, gamma-type BF35_2169 PF00730 HhH-GPD superfamily base excision DNA repair protein BF35_2169 PF14815 NUDIX domain BF35_217 PF01048 Phosphorylase superfamily BF35_2170 PF04307 LexA-binding, inner membrane-associated putative hydrolase BF35_2171 PF14043 WVELL protein BF35_2172 PF08176 Small acid-soluble spore protein K family BF35_2175 PF02631 RecX family BF35_2176 PF01370 NAD dependent epimerase/dehydratase family BF35_2176 PF08338 Domain of unknown function (DUF1731) BF35_2177 PF01979 Amidohydrolase family BF35_218 PF13021 Domain of unknown function (DUF3885) BF35_2180 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF35_2180 PF04101 Glycosyltransferase family 28 C-terminal domain BF35_2181 PF04055 Radical SAM superfamily BF35_2182 PF01228 Glycine radical BF35_2182 PF02901 Pyruvate formate lyase-like BF35_2183 PF00535 Glycosyl transferase family 2 BF35_2184 PF00551 Formyl transferase BF35_2184 PF01370 NAD dependent epimerase/dehydratase family BF35_2184 PF02911 Formyl transferase, C-terminal domain BF35_2185 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF35_2185 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF35_2185 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF35_2186 PF00535 Glycosyl transferase family 2 BF35_219 PF01966 HD domain BF35_2190 PF00144 Beta-lactamase BF35_2191 PF00367 phosphotransferase system, EIIB BF35_2191 PF02378 Phosphotransferase system, EIIC BF35_2192 PF04960 Glutaminase BF35_2197 PF01546 Peptidase family M20/M25/M40 BF35_2197 PF07687 Peptidase dimerisation domain BF35_2198 PF00324 Amino acid permease BF35_220 PF00486 Transcriptional regulatory protein, C terminal BF35_220 PF00072 Response regulator receiver domain BF35_2200 PF02954 Bacterial regulatory protein, Fis family BF35_2200 PF00158 Sigma-54 interaction domain BF35_2200 PF13426 PAS domain BF35_2202 PF01416 tRNA pseudouridine synthase BF35_2203 PF01938 TRAM domain BF35_2203 PF05958 tRNA (Uracil-5-)-methyltransferase BF35_2204 PF00730 HhH-GPD superfamily base excision DNA repair protein BF35_2205 PF01522 Polysaccharide deacetylase BF35_2206 PF05683 Fumarase C-terminus BF35_2206 PF05681 Fumarate hydratase (Fumerase) BF35_221 PF00512 His Kinase A (phospho-acceptor) domain BF35_221 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2210 PF14167 YfkD-like protein BF35_2211 PF01699 Sodium/calcium exchanger protein BF35_2212 PF16242 Pyridoxamine 5'-phosphate oxidase like BF35_2215 PF09335 SNARE associated Golgi protein BF35_2217 PF10502 Signal peptidase, peptidase S26 BF35_2219 PF00892 EamA-like transporter family BF35_222 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_222 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_2221 PF03631 Virulence factor BrkB BF35_2223 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF35_2224 PF06569 Protein of unknown function (DUF1128) BF35_2225 PF00689 Cation transporting ATPase, C-terminus BF35_2225 PF00690 Cation transporter/ATPase, N-terminus BF35_2226 PF05816 Toxic anion resistance protein (TelA) BF35_2227 PF14266 Putative component of 'biosynthetic module' BF35_2228 PF03741 Integral membrane protein TerC family BF35_2229 PF02342 TerD domain BF35_223 PF05163 DinB family BF35_2230 PF02342 TerD domain BF35_2231 PF02342 TerD domain BF35_2232 PF00480 ROK family BF35_2234 PF03129 Anticodon binding domain BF35_2234 PF09180 Prolyl-tRNA synthetase, C-terminal BF35_2234 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF35_2237 PF11700 Vacuole effluxer Atg22 like BF35_2240 PF08360 QacR-like protein, C-terminal region BF35_2240 PF00440 Bacterial regulatory proteins, tetR family BF35_2245 PF00041 Fibronectin type III domain BF35_2245 PF00704 Glycosyl hydrolases family 18 BF35_2246 PF12848 ABC transporter BF35_2246 PF00005 ABC transporter BF35_2248 PF00005 ABC transporter BF35_225 PF00485 Phosphoribulokinase / Uridine kinase family BF35_2250 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2251 PF01910 Thiamine-binding protein BF35_2252 PF00672 HAMP domain BF35_2252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_2253 PF03605 Anaerobic c4-dicarboxylate membrane transporter BF35_2254 PF02581 Thiamine monophosphate synthase BF35_2255 PF02110 Hydroxyethylthiazole kinase family BF35_2256 PF01751 Toprim domain BF35_2256 PF01131 DNA topoisomerase BF35_2257 PF01061 ABC-2 type transporter BF35_2258 PF03372 Endonuclease/Exonuclease/phosphatase family BF35_2259 PF02378 Phosphotransferase system, EIIC BF35_2259 PF00367 phosphotransferase system, EIIB BF35_2259 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF35_2260 PF00128 Alpha amylase, catalytic domain BF35_2260 PF16657 Maltogenic Amylase, C-terminal domain BF35_2261 PF08031 Berberine and berberine like BF35_2261 PF01565 FAD binding domain BF35_2263 PF13545 Crp-like helix-turn-helix domain BF35_2263 PF00027 Cyclic nucleotide-binding domain BF35_2264 PF00696 Amino acid kinase family BF35_2265 PF13520 Amino acid permease BF35_2266 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF35_2266 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF35_2268 PF02863 Arginine repressor, C-terminal domain BF35_2268 PF01316 Arginine repressor, DNA binding domain BF35_2269 PF02743 Cache domain BF35_2269 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_2269 PF00672 HAMP domain BF35_2270 PF00005 ABC transporter BF35_2271 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF35_2272 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2274 PF01266 FAD dependent oxidoreductase BF35_2274 PF00355 Rieske [2Fe-2S] domain BF35_2275 PF07690 Major Facilitator Superfamily BF35_2276 PF10127 RNA repair pathway DNA polymerase beta family BF35_228 PF16177 Acetyl-coenzyme A synthetase N-terminus BF35_228 PF13193 AMP-binding enzyme C-terminal domain BF35_228 PF00501 AMP-binding enzyme BF35_2285 PF12728 Helix-turn-helix domain BF35_2287 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_2288 PF01497 Periplasmic binding protein BF35_2289 PF01032 FecCD transport family BF35_229 PF01039 Carboxyl transferase domain BF35_2290 PF01032 FecCD transport family BF35_2291 PF00596 Class II Aldolase and Adducin N-terminal domain BF35_2293 PF01636 Phosphotransferase enzyme family BF35_2294 PF00578 AhpC/TSA family BF35_2295 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_2295 PF13192 Thioredoxin domain BF35_2297 PF01546 Peptidase family M20/M25/M40 BF35_2297 PF07687 Peptidase dimerisation domain BF35_230 PF00378 Enoyl-CoA hydratase/isomerase BF35_2300 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF35_2300 PF13378 Enolase C-terminal domain-like BF35_2303 PF07308 Protein of unknown function (DUF1456) BF35_2304 PF00512 His Kinase A (phospho-acceptor) domain BF35_2304 PF13426 PAS domain BF35_2304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2304 PF13188 PAS domain BF35_2304 PF00989 PAS fold BF35_2305 PF01207 Dihydrouridine synthase (Dus) BF35_2306 PF05958 tRNA (Uracil-5-)-methyltransferase BF35_2306 PF01938 TRAM domain BF35_2306 PF02475 Met-10+ like-protein BF35_2307 PF07670 Nucleoside recognition BF35_2307 PF07662 Na+ dependent nucleoside transporter C-terminus BF35_2307 PF01773 Na+ dependent nucleoside transporter N-terminus BF35_231 PF00682 HMGL-like BF35_2310 PF02073 Thermophilic metalloprotease (M29) BF35_2311 PF00893 Small Multidrug Resistance protein BF35_2312 PF00171 Aldehyde dehydrogenase family BF35_2313 PF00158 Sigma-54 interaction domain BF35_2314 PF00202 Aminotransferase class-III BF35_2315 PF13419 Haloacid dehalogenase-like hydrolase BF35_2316 PF00781 Diacylglycerol kinase catalytic domain BF35_2317 PF02637 GatB domain BF35_2317 PF02934 GatB/GatE catalytic domain BF35_2318 PF01425 Amidase BF35_2319 PF02686 Glu-tRNAGln amidotransferase C subunit BF35_232 PF00364 Biotin-requiring enzyme BF35_2320 PF05360 yiaA/B two helix domain BF35_2321 PF01047 MarR family BF35_2322 PF17886 HSP20-like domain found in ArsA BF35_2322 PF02374 Anion-transporting ATPase BF35_2325 PF03180 NLPA lipoprotein BF35_2326 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2327 PF09383 NIL domain BF35_2327 PF00005 ABC transporter BF35_2328 PF00857 Isochorismatase family BF35_233 PF00289 Biotin carboxylase, N-terminal domain BF35_233 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF35_233 PF02785 Biotin carboxylase C-terminal domain BF35_2330 PF00171 Aldehyde dehydrogenase family BF35_2331 PF01925 Sulfite exporter TauE/SafE BF35_2332 PF07537 CamS sex pheromone cAM373 precursor BF35_2333 PF12826 Helix-hairpin-helix motif BF35_2333 PF00533 BRCA1 C Terminus (BRCT) domain BF35_2333 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF35_2333 PF01653 NAD-dependent DNA ligase adenylation domain BF35_2333 PF03120 NAD-dependent DNA ligase OB-fold domain BF35_2334 PF00580 UvrD/REP helicase N-terminal domain BF35_2334 PF13361 UvrD-like helicase C-terminal domain BF35_2335 PF01884 PcrB family BF35_2339 PF02844 Phosphoribosylglycinamide synthetase, N domain BF35_2339 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF35_2339 PF02843 Phosphoribosylglycinamide synthetase, C domain BF35_234 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF35_234 PF02770 Acyl-CoA dehydrogenase, middle domain BF35_234 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF35_2340 PF02142 MGS-like domain BF35_2340 PF01808 AICARFT/IMPCHase bienzyme BF35_2341 PF00551 Formyl transferase BF35_2342 PF02769 AIR synthase related protein, C-terminal domain BF35_2342 PF00586 AIR synthase related protein, N-terminal domain BF35_2343 PF00156 Phosphoribosyl transferase domain BF35_2344 PF00586 AIR synthase related protein, N-terminal domain BF35_2344 PF02769 AIR synthase related protein, C-terminal domain BF35_2344 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BF35_2346 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BF35_2347 PF01259 SAICAR synthetase BF35_2348 PF00206 Lyase BF35_2348 PF10397 Adenylosuccinate lyase C-terminus BF35_2349 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BF35_2349 PF02222 ATP-grasp domain BF35_2350 PF00731 AIR carboxylase BF35_2356 PF00892 EamA-like transporter family BF35_2361 PF01619 Proline dehydrogenase BF35_2362 PF00392 Bacterial regulatory proteins, gntR family BF35_2362 PF00155 Aminotransferase class I and II BF35_2367 PF00535 Glycosyl transferase family 2 BF35_237 PF00440 Bacterial regulatory proteins, tetR family BF35_237 PF08359 YsiA-like protein, C-terminal region BF35_2371 PF08241 Methyltransferase domain BF35_2373 PF05045 Rhamnan synthesis protein F BF35_2373 PF14307 Glycosyltransferase WbsX BF35_2378 PF01323 DSBA-like thioredoxin domain BF35_2384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2384 PF00989 PAS fold BF35_2384 PF16736 Single Cache-like BF35_2384 PF00512 His Kinase A (phospho-acceptor) domain BF35_2385 PF00486 Transcriptional regulatory protein, C terminal BF35_2385 PF00072 Response regulator receiver domain BF35_2386 PF00860 Permease family BF35_2387 PF00117 Glutamine amidotransferase class-I BF35_2387 PF00958 GMP synthase C terminal domain BF35_2387 PF02540 NAD synthase BF35_2388 PF00118 TCP-1/cpn60 chaperonin family BF35_2389 PF00166 Chaperonin 10 Kd subunit BF35_239 PF00005 ABC transporter BF35_2390 PF02517 CPBP intramembrane metalloprotease BF35_2392 PF02629 CoA binding domain BF35_2392 PF06971 Putative DNA-binding protein N-terminus BF35_2393 PF00005 ABC transporter BF35_2393 PF16326 ABC transporter C-terminal domain BF35_2393 PF12848 ABC transporter BF35_2394 PF00814 Glycoprotease family BF35_2395 PF00583 Acetyltransferase (GNAT) family BF35_2396 PF00814 Glycoprotease family BF35_2397 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BF35_241 PF00581 Rhodanese-like domain BF35_2415 PF17283 SprT-like zinc ribbon domain BF35_2415 PF10263 SprT-like family BF35_2416 PF16921 Tex protein YqgF-like domain BF35_2416 PF09371 Tex-like protein N-terminal domain BF35_2416 PF00575 S1 RNA binding domain BF35_2416 PF17674 HHH domain BF35_2417 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BF35_2418 PF01402 Ribbon-helix-helix protein, copG family BF35_2419 PF01168 Alanine racemase, N-terminal domain BF35_2419 PF00842 Alanine racemase, C-terminal domain BF35_242 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_2421 PF01648 4'-phosphopantetheinyl transferase superfamily BF35_2422 PF03851 UV-endonuclease UvdE BF35_2423 PF01694 Rhomboid family BF35_2424 PF00271 Helicase conserved C-terminal domain BF35_2424 PF00270 DEAD/DEAH box helicase BF35_2425 PF02875 Mur ligase family, glutamate ligase domain BF35_2425 PF08245 Mur ligase middle domain BF35_2425 PF01225 Mur ligase family, catalytic domain BF35_2426 PF07478 D-ala D-ala ligase C-terminus BF35_2426 PF01820 D-ala D-ala ligase N-terminus BF35_2427 PF07690 Major Facilitator Superfamily BF35_2428 PF13520 Amino acid permease BF35_243 PF03009 Glycerophosphoryl diester phosphodiesterase family BF35_2430 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF35_2431 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_2438 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_2438 PF00005 ABC transporter BF35_2439 PF00005 ABC transporter BF35_2439 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_2441 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2442 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_2444 PF00005 ABC transporter BF35_2444 PF12848 ABC transporter BF35_2444 PF16326 ABC transporter C-terminal domain BF35_2448 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BF35_2450 PF01026 TatD related DNase BF35_2453 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_2453 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_2455 PF00356 Bacterial regulatory proteins, lacI family BF35_2455 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF35_2457 PF01553 Acyltransferase BF35_246 PF02557 D-alanyl-D-alanine carboxypeptidase BF35_2460 PF14142 YrzO-like protein BF35_2461 PF00892 EamA-like transporter family BF35_2462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_2462 PF03466 LysR substrate binding domain BF35_2465 PF12728 Helix-turn-helix domain BF35_2465 PF12727 PBP superfamily domain BF35_2467 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2468 PF06800 Sugar transport protein BF35_2469 PF03807 NADP oxidoreductase coenzyme F420-dependent BF35_2469 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF35_247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_247 PF00512 His Kinase A (phospho-acceptor) domain BF35_2470 PF00248 Aldo/keto reductase family BF35_2471 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_2472 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_2474 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_2475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_2475 PF00005 ABC transporter BF35_2476 PF00005 ABC transporter BF35_2476 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF35_2477 PF00528 Binding-protein-dependent transport system inner membrane component BF35_2477 PF12911 N-terminal TM domain of oligopeptide transport permease C BF35_2478 PF00528 Binding-protein-dependent transport system inner membrane component BF35_248 PF00072 Response regulator receiver domain BF35_248 PF00486 Transcriptional regulatory protein, C terminal BF35_2481 PF07690 Major Facilitator Superfamily BF35_2483 PF07690 Major Facilitator Superfamily BF35_2484 PF01565 FAD binding domain BF35_249 PF00144 Beta-lactamase BF35_2491 PF00326 Prolyl oligopeptidase family BF35_2491 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BF35_2492 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF35_2492 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF35_2493 PF02447 GntP family permease BF35_2494 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF35_2494 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF35_2495 PF00392 Bacterial regulatory proteins, gntR family BF35_2495 PF07729 FCD domain BF35_2496 PF00561 alpha/beta hydrolase fold BF35_2497 PF00144 Beta-lactamase BF35_2498 PF01380 SIS domain BF35_2499 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF35_2499 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF35_2499 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF35_2499 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF35_25 PF01541 GIY-YIG catalytic domain BF35_2500 PF07949 YbbR-like protein BF35_2501 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF35_2502 PF00491 Arginase family BF35_2503 PF02595 Glycerate kinase family BF35_2520 PF14089 KinB-signalling pathway activation in sporulation BF35_2521 PF17898 Spore germination GerD central core domain BF35_2522 PF10609 NUBPL iron-transfer P-loop NTPase BF35_2523 PF01520 N-acetylmuramoyl-L-alanine amidase BF35_2525 PF00380 Ribosomal protein S9/S16 BF35_2526 PF00572 Ribosomal protein L13 BF35_2527 PF01416 tRNA pseudouridine synthase BF35_2528 PF02361 Cobalt transport protein BF35_2529 PF00005 ABC transporter BF35_253 PF11799 impB/mucB/samB family C-terminal domain BF35_253 PF00817 impB/mucB/samB family BF35_253 PF11798 IMS family HHH motif BF35_2530 PF00005 ABC transporter BF35_2531 PF01196 Ribosomal protein L17 BF35_2532 PF01000 RNA polymerase Rpb3/RpoA insert domain BF35_2532 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF35_2532 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF35_2533 PF00411 Ribosomal protein S11 BF35_2534 PF00416 Ribosomal protein S13/S18 BF35_2535 PF00444 Ribosomal protein L36 BF35_2536 PF01176 Translation initiation factor 1A / IF-1 BF35_2537 PF00557 Metallopeptidase family M24 BF35_2538 PF05191 Adenylate kinase, active site lid BF35_2539 PF00344 SecY translocase BF35_2540 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BF35_2541 PF00327 Ribosomal protein L30p/L7e BF35_2542 PF03719 Ribosomal protein S5, C-terminal domain BF35_2542 PF00333 Ribosomal protein S5, N-terminal domain BF35_2543 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BF35_2544 PF00347 Ribosomal protein L6 BF35_2545 PF00410 Ribosomal protein S8 BF35_2546 PF00253 Ribosomal protein S14p/S29e BF35_2547 PF00673 ribosomal L5P family C-terminus BF35_2547 PF00281 Ribosomal protein L5 BF35_2548 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BF35_2548 PF00467 KOW motif BF35_2549 PF00238 Ribosomal protein L14p/L23e BF35_2550 PF00366 Ribosomal protein S17 BF35_2551 PF00831 Ribosomal L29 protein BF35_2552 PF00252 Ribosomal protein L16p/L10e BF35_2553 PF00189 Ribosomal protein S3, C-terminal domain BF35_2553 PF07650 KH domain BF35_2554 PF00237 Ribosomal protein L22p/L17e BF35_2555 PF00203 Ribosomal protein S19 BF35_2556 PF03947 Ribosomal Proteins L2, C-terminal domain BF35_2556 PF00181 Ribosomal Proteins L2, RNA binding domain BF35_2557 PF00276 Ribosomal protein L23 BF35_2558 PF00573 Ribosomal protein L4/L1 family BF35_2559 PF00297 Ribosomal protein L3 BF35_256 PF02743 Cache domain BF35_256 PF00672 HAMP domain BF35_256 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_2560 PF00338 Ribosomal protein S10p/S20e BF35_2561 PF00009 Elongation factor Tu GTP binding domain BF35_2561 PF03144 Elongation factor Tu domain 2 BF35_2561 PF03143 Elongation factor Tu C-terminal domain BF35_2562 PF03144 Elongation factor Tu domain 2 BF35_2562 PF00009 Elongation factor Tu GTP binding domain BF35_2562 PF03764 Elongation factor G, domain IV BF35_2562 PF14492 Elongation Factor G, domain II BF35_2562 PF00679 Elongation factor G C-terminus BF35_2563 PF00177 Ribosomal protein S7p/S5e BF35_2564 PF00164 Ribosomal protein S12/S23 BF35_2565 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF35_2566 PF04997 RNA polymerase Rpb1, domain 1 BF35_2566 PF04983 RNA polymerase Rpb1, domain 3 BF35_2566 PF04998 RNA polymerase Rpb1, domain 5 BF35_2566 PF05000 RNA polymerase Rpb1, domain 4 BF35_2566 PF00623 RNA polymerase Rpb1, domain 2 BF35_2567 PF04563 RNA polymerase beta subunit BF35_2567 PF10385 RNA polymerase beta subunit external 1 domain BF35_2567 PF04565 RNA polymerase Rpb2, domain 3 BF35_2567 PF04561 RNA polymerase Rpb2, domain 2 BF35_2567 PF00562 RNA polymerase Rpb2, domain 6 BF35_2567 PF04560 RNA polymerase Rpb2, domain 7 BF35_2568 PF05175 Methyltransferase small domain BF35_2569 PF16320 Ribosomal protein L7/L12 dimerisation domain BF35_2569 PF00542 Ribosomal protein L7/L12 C-terminal domain BF35_257 PF13302 Acetyltransferase (GNAT) domain BF35_2570 PF00466 Ribosomal protein L10 BF35_2571 PF00687 Ribosomal protein L1p/L10e family BF35_2572 PF03946 Ribosomal protein L11, N-terminal domain BF35_2572 PF00298 Ribosomal protein L11, RNA binding domain BF35_2573 PF00467 KOW motif BF35_2573 PF02357 Transcription termination factor nusG BF35_2574 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BF35_2575 PF08281 Sigma-70, region 4 BF35_2575 PF04542 Sigma-70 region 2 BF35_2576 PF05991 YacP-like NYN domain BF35_2577 PF00588 SpoU rRNA Methylase family BF35_2577 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF35_2578 PF00636 Ribonuclease III domain BF35_2579 PF09190 DALR domain BF35_2579 PF01406 tRNA synthetases class I (C) catalytic domain BF35_2580 PF06426 Serine acetyltransferase, N-terminal BF35_2580 PF00132 Bacterial transferase hexapeptide (six repeats) BF35_2581 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF35_2582 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF35_2583 PF02542 YgbB family BF35_2584 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF35_2586 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF35_2586 PF10635 DisA bacterial checkpoint controller linker region BF35_2587 PF18073 Rubredoxin metal binding domain BF35_2588 PF00004 ATPase family associated with various cellular activities (AAA) BF35_2588 PF02861 Clp amino terminal domain, pathogenicity island component BF35_2588 PF17871 AAA lid domain BF35_2588 PF07724 AAA domain (Cdc48 subfamily) BF35_2588 PF10431 C-terminal, D2-small domain, of ClpB protein BF35_2589 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BF35_259 PF03707 Bacterial signalling protein N terminal repeat BF35_259 PF00990 Diguanylate cyclase, GGDEF domain BF35_259 PF00563 EAL domain BF35_2590 PF02151 UvrB/uvrC motif BF35_2591 PF05848 CtsR N-terminal HTH domain BF35_2591 PF17727 CtsR C-terminal dimerization domain BF35_2609 PF00152 tRNA synthetases class II (D, K and N) BF35_2609 PF01336 OB-fold nucleic acid binding domain BF35_261 PF01520 N-acetylmuramoyl-L-alanine amidase BF35_261 PF00395 S-layer homology domain BF35_2610 PF01207 Dihydrouridine synthase (Dus) BF35_2611 PF01381 Helix-turn-helix BF35_2612 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF35_2613 PF02152 Dihydroneopterin aldolase BF35_2614 PF00809 Pterin binding enzyme BF35_2615 PF01063 Amino-transferase class IV BF35_2616 PF00117 Glutamine amidotransferase class-I BF35_2617 PF04715 Anthranilate synthase component I, N terminal region BF35_2617 PF00425 chorismate binding enzyme BF35_2618 PF00291 Pyridoxal-phosphate dependent enzyme BF35_2619 PF01430 Hsp33 protein BF35_2620 PF03309 Type III pantothenate kinase BF35_2621 PF17862 AAA+ lid domain BF35_2621 PF06480 FtsH Extracellular BF35_2621 PF01434 Peptidase family M41 BF35_2621 PF00004 ATPase family associated with various cellular activities (AAA) BF35_2623 PF11734 TilS substrate C-terminal domain BF35_2623 PF09179 TilS substrate binding domain BF35_2623 PF01171 PP-loop family BF35_2624 PF07228 Stage II sporulation protein E (SpoIIE) BF35_2627 PF00575 S1 RNA binding domain BF35_2629 PF09578 Spore cortex protein YabQ (Spore_YabQ) BF35_263 PF12389 Camelysin metallo-endopeptidase BF35_2630 PF07873 YabP family BF35_2631 PF01479 S4 domain BF35_2632 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF35_2632 PF03819 MazG nucleotide pyrophosphohydrolase domain BF35_2633 PF14667 Polysaccharide biosynthesis C-terminal domain BF35_2633 PF01943 Polysaccharide biosynthesis protein BF35_2634 PF15714 Stage V sporulation protein T C-terminal, transcription factor BF35_2634 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF35_2635 PF17757 UvrB interaction domain BF35_2635 PF00271 Helicase conserved C-terminal domain BF35_2635 PF00270 DEAD/DEAH box helicase BF35_2635 PF02559 CarD-like/TRCF domain BF35_2635 PF03461 TRCF domain BF35_2637 PF01195 Peptidyl-tRNA hydrolase BF35_2638 PF14572 Phosphoribosyl synthetase-associated domain BF35_2638 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF35_2639 PF00483 Nucleotidyl transferase BF35_2639 PF00132 Bacterial transferase hexapeptide (six repeats) BF35_264 PF13860 FlgD Ig-like domain BF35_264 PF05922 Peptidase inhibitor I9 BF35_264 PF02225 PA domain BF35_264 PF00082 Subtilase family BF35_2640 PF04026 SpoVG BF35_2641 PF01042 Endoribonuclease L-PSP BF35_2642 PF09182 Bacterial purine repressor, N-terminal BF35_2642 PF00156 Phosphoribosyl transferase domain BF35_2643 PF08544 GHMP kinases C terminal BF35_2643 PF00288 GHMP kinases N terminal domain BF35_2644 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF35_2645 PF06257 Biofilm formation stimulator VEG BF35_2646 PF05582 YabG peptidase U57 BF35_2647 PF00398 Ribosomal RNA adenine dimethylase BF35_2648 PF13662 Toprim domain BF35_2648 PF13331 Domain of unknown function (DUF4093) BF35_2649 PF01026 TatD related DNase BF35_265 PF00072 Response regulator receiver domain BF35_265 PF00196 Bacterial regulatory proteins, luxR family BF35_2650 PF01588 Putative tRNA binding domain BF35_2650 PF09334 tRNA synthetases class I (M) BF35_2650 PF08264 Anticodon-binding domain of tRNA BF35_2651 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF35_2651 PF18277 AbrB C-terminal domain BF35_2652 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF35_2653 PF01541 GIY-YIG catalytic domain BF35_2654 PF05175 Methyltransferase small domain BF35_2655 PF06156 Initiation control protein YabA BF35_2656 PF04468 PSP1 C-terminal conserved region BF35_2657 PF09115 DNA polymerase III, delta subunit, C terminal BF35_2658 PF02223 Thymidylate kinase BF35_2659 PF01276 Orn/Lys/Arg decarboxylase, major domain BF35_2659 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF35_266 PF13492 GAF domain BF35_266 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_266 PF07730 Histidine kinase BF35_2667 PF07441 SigmaK-factor processing regulatory protein BofA BF35_2668 PF10704 Protein of unknown function (DUF2508) BF35_2669 PF02132 RecR protein BF35_2669 PF13662 Toprim domain BF35_267 PF01209 ubiE/COQ5 methyltransferase family BF35_2670 PF02575 YbaB/EbfC DNA-binding family BF35_2671 PF12169 DNA polymerase III subunits gamma and tau domain III BF35_2672 PF14437 MafB19-like deaminase BF35_2673 PF00857 Isochorismatase family BF35_2674 PF01712 Deoxynucleoside kinase BF35_2675 PF01712 Deoxynucleoside kinase BF35_2678 PF02403 Seryl-tRNA synthetase N-terminal domain BF35_2678 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF35_2679 PF01174 SNO glutamine amidotransferase family BF35_2680 PF01680 SOR/SNZ family BF35_2681 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_2681 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_2682 PF00478 IMP dehydrogenase / GMP reductase domain BF35_2682 PF00571 CBS domain BF35_2683 PF14175 YaaC-like Protein BF35_2689 PF03989 DNA gyrase C-terminal domain, beta-propeller BF35_2689 PF00521 DNA gyrase/topoisomerase IV, subunit A BF35_2690 PF00204 DNA gyrase B BF35_2690 PF01751 Toprim domain BF35_2690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2690 PF00986 DNA gyrase B subunit, carboxyl terminus BF35_2691 PF02463 RecF/RecN/SMC N terminal domain BF35_2693 PF02768 DNA polymerase III beta subunit, C-terminal domain BF35_2693 PF00712 DNA polymerase III beta subunit, N-terminal domain BF35_2693 PF02767 DNA polymerase III beta subunit, central domain BF35_2694 PF11638 DnaA N-terminal domain BF35_2694 PF08299 Bacterial dnaA protein helix-turn-helix BF35_2694 PF00308 Bacterial dnaA protein BF35_2695 PF00468 Ribosomal protein L34 BF35_2696 PF00825 Ribonuclease P BF35_2697 PF02096 60Kd inner membrane protein BF35_2698 PF01424 R3H domain BF35_2698 PF14804 Jag N-terminus BF35_2699 PF10396 GTP-binding protein TrmE N-terminus BF35_2699 PF01926 50S ribosome-binding GTPase BF35_2699 PF12631 MnmE helical domain BF35_27 PF02673 Bacitracin resistance protein BacA BF35_2700 PF01134 Glucose inhibited division protein A BF35_2700 PF13932 GidA associated domain BF35_2701 PF02527 rRNA small subunit methyltransferase G BF35_2702 PF17762 HTH domain found in ParB protein BF35_2702 PF02195 ParB-like nuclease domain BF35_2703 PF13614 AAA domain BF35_2704 PF17762 HTH domain found in ParB protein BF35_2704 PF02195 ParB-like nuclease domain BF35_2705 PF06866 Protein of unknown function (DUF1256) BF35_2706 PF00924 Mechanosensitive ion channel BF35_2707 PF06107 Bacterial protein of unknown function (DUF951) BF35_2708 PF01926 50S ribosome-binding GTPase BF35_2708 PF06071 Protein of unknown function (DUF933) BF35_2709 PF01250 Ribosomal protein S6 BF35_2710 PF00436 Single-strand binding protein family BF35_2711 PF01084 Ribosomal protein S18 BF35_2712 PF09991 Predicted membrane protein (DUF2232) BF35_2713 PF02272 DHHA1 domain BF35_2713 PF01368 DHH family BF35_2714 PF01281 Ribosomal protein L9, N-terminal domain BF35_2714 PF03948 Ribosomal protein L9, C-terminal domain BF35_2715 PF00772 DnaB-like helicase N terminal domain BF35_2715 PF03796 DnaB-like helicase C terminal domain BF35_2716 PF00709 Adenylosuccinate synthetase BF35_2721 PF00486 Transcriptional regulatory protein, C terminal BF35_2721 PF00072 Response regulator receiver domain BF35_2722 PF13426 PAS domain BF35_2722 PF00672 HAMP domain BF35_2722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2722 PF00512 His Kinase A (phospho-acceptor) domain BF35_2723 PF07435 YycH protein BF35_2724 PF09648 YycH protein BF35_2725 PF00753 Metallo-beta-lactamase superfamily BF35_2726 PF13180 PDZ domain BF35_2728 PF02590 Predicted SPOUT methyltransferase BF35_273 PF00753 Metallo-beta-lactamase superfamily BF35_273 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF35_2730 PF08439 Oligopeptidase F BF35_2730 PF01432 Peptidase family M3 BF35_2731 PF00478 IMP dehydrogenase / GMP reductase domain BF35_2733 PF03880 DbpA RNA binding domain BF35_2733 PF00270 DEAD/DEAH box helicase BF35_2733 PF00271 Helicase conserved C-terminal domain BF35_2735 PF03006 Haemolysin-III related BF35_2736 PF16363 GDP-mannose 4,6 dehydratase BF35_2738 PF02293 AmiS/UreI family transporter BF35_2740 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF35_2740 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF35_2741 PF02898 Nitric oxide synthase, oxygenase domain BF35_2742 PF02028 BCCT, betaine/carnitine/choline family transporter BF35_2743 PF07690 Major Facilitator Superfamily BF35_2744 PF06580 Histidine kinase BF35_2744 PF07694 5TMR of 5TMR-LYT BF35_2744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2744 PF13492 GAF domain BF35_2745 PF00072 Response regulator receiver domain BF35_2745 PF04397 LytTr DNA-binding domain BF35_2746 PF03788 LrgA family BF35_2747 PF04172 LrgB-like family BF35_2748 PF01594 AI-2E family transporter BF35_2749 PF01641 SelR domain BF35_2749 PF01625 Peptide methionine sulfoxide reductase BF35_275 PF01757 Acyltransferase family BF35_2750 PF00873 AcrB/AcrD/AcrF family BF35_2751 PF00440 Bacterial regulatory proteins, tetR family BF35_2752 PF00535 Glycosyl transferase family 2 BF35_2756 PF12848 ABC transporter BF35_2756 PF00005 ABC transporter BF35_2757 PF00535 Glycosyl transferase family 2 BF35_2759 PF03061 Thioesterase superfamily BF35_2761 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_2762 PF03458 UPF0126 domain BF35_2765 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF35_2766 PF07690 Major Facilitator Superfamily BF35_2767 PF00072 Response regulator receiver domain BF35_2767 PF04397 LytTr DNA-binding domain BF35_2768 PF02554 Carbon starvation protein CstA BF35_2768 PF13722 5TM C-terminal transporter carbon starvation CstA BF35_2769 PF04328 Selenoprotein, putative BF35_277 PF07486 Cell Wall Hydrolase BF35_2770 PF00990 Diguanylate cyclase, GGDEF domain BF35_2770 PF07694 5TMR of 5TMR-LYT BF35_2771 PF08543 Phosphomethylpyrimidine kinase BF35_2772 PF07730 Histidine kinase BF35_2772 PF13185 GAF domain BF35_2773 PF00072 Response regulator receiver domain BF35_2773 PF00196 Bacterial regulatory proteins, luxR family BF35_2774 PF02525 Flavodoxin-like fold BF35_2775 PF00027 Cyclic nucleotide-binding domain BF35_2776 PF13419 Haloacid dehalogenase-like hydrolase BF35_2778 PF01053 Cys/Met metabolism PLP-dependent enzyme BF35_2779 PF04204 Homoserine O-succinyltransferase BF35_2780 PF00742 Homoserine dehydrogenase BF35_2780 PF01842 ACT domain BF35_2780 PF03447 Homoserine dehydrogenase, NAD binding domain BF35_2782 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF35_2782 PF00356 Bacterial regulatory proteins, lacI family BF35_2783 PF13472 GDSL-like Lipase/Acylhydrolase family BF35_2784 PF00005 ABC transporter BF35_2785 PF12679 ABC-2 family transporter protein BF35_2786 PF03167 Uracil DNA glycosylase superfamily BF35_2787 PF12823 Domain of unknown function (DUF3817) BF35_2789 PF00860 Permease family BF35_2790 PF02254 TrkA-N domain BF35_2790 PF07885 Ion channel BF35_2792 PF04241 Protein of unknown function (DUF423) BF35_2793 PF09671 Spore coat protein (Spore_GerQ) BF35_2794 PF07486 Cell Wall Hydrolase BF35_2795 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_2795 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_2797 PF01515 Phosphate acetyl/butaryl transferase BF35_2798 PF03099 Biotin/lipoate A/B protein ligase family BF35_280 PF04962 KduI/IolB family BF35_2801 PF07293 Protein of unknown function (DUF1450) BF35_2802 PF01032 FecCD transport family BF35_2803 PF01032 FecCD transport family BF35_2804 PF00005 ABC transporter BF35_2805 PF01497 Periplasmic binding protein BF35_2806 PF01966 HD domain BF35_2807 PF01361 Tautomerase enzyme BF35_2808 PF02163 Peptidase family M50 BF35_2809 PF08741 YwhD family BF35_281 PF01116 Fructose-bisphosphate aldolase class-II BF35_2810 PF00905 Penicillin binding protein transpeptidase domain BF35_2810 PF00912 Transglycosylase BF35_2811 PF03009 Glycerophosphoryl diester phosphodiesterase family BF35_2812 PF13411 MerR HTH family regulatory protein BF35_2813 PF07690 Major Facilitator Superfamily BF35_2814 PF17284 Spermidine synthase tetramerisation domain BF35_2815 PF00491 Arginase family BF35_2818 PF17676 LD-carboxypeptidase C-terminal domain BF35_2818 PF02016 LD-carboxypeptidase N-terminal domain BF35_2819 PF09148 Domain of unknown function (DUF1934) BF35_282 PF01261 Xylose isomerase-like TIM barrel BF35_2820 PF05746 DALR anticodon binding domain BF35_2820 PF03485 Arginyl tRNA synthetase N terminal domain BF35_2820 PF00750 tRNA synthetases class I (R) BF35_2821 PF04542 Sigma-70 region 2 BF35_2821 PF08281 Sigma-70, region 4 BF35_2825 PF17802 Prealbumin-like fold domain BF35_2825 PF05737 Collagen binding domain BF35_2825 PF05738 Cna protein B-type domain BF35_2826 PF04389 Peptidase family M28 BF35_2826 PF02225 PA domain BF35_2827 PF00557 Metallopeptidase family M24 BF35_2828 PF00005 ABC transporter BF35_283 PF00205 Thiamine pyrophosphate enzyme, central domain BF35_283 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_283 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF35_2830 PF07730 Histidine kinase BF35_2830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2831 PF00196 Bacterial regulatory proteins, luxR family BF35_2831 PF00072 Response regulator receiver domain BF35_2835 PF00990 Diguanylate cyclase, GGDEF domain BF35_2835 PF00563 EAL domain BF35_2835 PF03707 Bacterial signalling protein N terminal repeat BF35_2836 PF03851 UV-endonuclease UvdE BF35_2837 PF13091 PLD-like domain BF35_2838 PF13183 4Fe-4S dicluster domain BF35_2838 PF02754 Cysteine-rich domain BF35_2839 PF00108 Thiolase, N-terminal domain BF35_2839 PF02803 Thiolase, C-terminal domain BF35_284 PF00171 Aldehyde dehydrogenase family BF35_2842 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF35_2842 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF35_2842 PF02770 Acyl-CoA dehydrogenase, middle domain BF35_2843 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF35_2843 PF02770 Acyl-CoA dehydrogenase, middle domain BF35_2843 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF35_2845 PF05066 HB1, ASXL, restriction endonuclease HTH domain BF35_2846 PF00117 Glutamine amidotransferase class-I BF35_2846 PF06418 CTP synthase N-terminus BF35_2847 PF10740 Domain of unknown function (DUF2529) BF35_2848 PF00072 Response regulator receiver domain BF35_2849 PF01116 Fructose-bisphosphate aldolase class-II BF35_285 PF00294 pfkB family carbohydrate kinase BF35_2850 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF35_2851 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF35_2852 PF07497 Rho termination factor, RNA-binding domain BF35_2852 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF35_2852 PF07498 Rho termination factor, N-terminal domain BF35_2853 PF01197 Ribosomal protein L31 BF35_2854 PF00265 Thymidine kinase BF35_2855 PF00472 RF-1 domain BF35_2855 PF03462 PCRF domain BF35_2856 PF13847 Methyltransferase domain BF35_2856 PF17827 PrmC N-terminal domain BF35_2857 PF09551 Stage II sporulation protein R (spore_II_R) BF35_2859 PF03481 Putative GTP-binding controlling metal-binding BF35_2859 PF01300 Telomere recombination BF35_286 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF35_286 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF35_2860 PF02659 Putative manganese efflux pump BF35_2862 PF01613 Flavin reductase like domain BF35_2863 PF07681 DoxX BF35_2864 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF35_2865 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF35_2866 PF02502 Ribose/Galactose Isomerase BF35_2867 PF04260 Protein of unknown function (DUF436) BF35_2868 PF00464 Serine hydroxymethyltransferase BF35_2871 PF03899 ATP synthase I chain BF35_2872 PF00119 ATP synthase A chain BF35_2873 PF00137 ATP synthase subunit C BF35_2874 PF00430 ATP synthase B/B' CF(0) BF35_2875 PF00213 ATP synthase delta (OSCP) subunit BF35_2876 PF00306 ATP synthase alpha/beta chain, C terminal domain BF35_2876 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF35_2876 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF35_2877 PF00231 ATP synthase BF35_2878 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF35_2878 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF35_2879 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BF35_2879 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF35_288 PF07690 Major Facilitator Superfamily BF35_2882 PF03707 Bacterial signalling protein N terminal repeat BF35_2882 PF00990 Diguanylate cyclase, GGDEF domain BF35_2882 PF00563 EAL domain BF35_2883 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BF35_2884 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BF35_2885 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BF35_2886 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BF35_2887 PF00146 NADH dehydrogenase BF35_2889 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BF35_289 PF00356 Bacterial regulatory proteins, lacI family BF35_2890 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BF35_2891 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BF35_2891 PF00361 Proton-conducting membrane transporter BF35_2891 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF35_2892 PF00361 Proton-conducting membrane transporter BF35_2893 PF00361 Proton-conducting membrane transporter BF35_2894 PF06612 Protein of unknown function (DUF1146) BF35_2896 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF35_2897 PF08486 Stage II sporulation protein BF35_2898 PF00072 Response regulator receiver domain BF35_2898 PF04397 LytTr DNA-binding domain BF35_2899 PF00005 ABC transporter BF35_290 PF01569 PAP2 superfamily BF35_2901 PF01551 Peptidase family M23 BF35_2902 PF12116 Stage III sporulation protein D BF35_2904 PF01467 Cytidylyltransferase-like BF35_2905 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BF35_2906 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BF35_2907 PF00534 Glycosyl transferases group 1 BF35_2908 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF35_2908 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF35_2909 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BF35_2910 PF01061 ABC-2 type transporter BF35_2911 PF08239 Bacterial SH3 domain BF35_2911 PF00005 ABC transporter BF35_2912 PF00483 Nucleotidyl transferase BF35_2914 PF07977 FabA-like domain BF35_2915 PF03816 Cell envelope-related transcriptional attenuator domain BF35_2917 PF16363 GDP-mannose 4,6 dehydratase BF35_2918 PF00486 Transcriptional regulatory protein, C terminal BF35_2918 PF00072 Response regulator receiver domain BF35_2919 PF00989 PAS fold BF35_2919 PF00512 His Kinase A (phospho-acceptor) domain BF35_2919 PF16736 Single Cache-like BF35_2919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_2922 PF07690 Major Facilitator Superfamily BF35_2924 PF00005 ABC transporter BF35_2925 PF02687 FtsX-like permease family BF35_2925 PF12704 MacB-like periplasmic core domain BF35_2926 PF04893 Yip1 domain BF35_2933 PF00176 SNF2 family N-terminal domain BF35_2933 PF00271 Helicase conserved C-terminal domain BF35_2933 PF12419 SNF2 Helicase protein BF35_2934 PF04434 SWIM zinc finger BF35_2939 PF06725 3D domain BF35_2939 PF01476 LysM domain BF35_2940 PF02028 BCCT, betaine/carnitine/choline family transporter BF35_2944 PF01773 Na+ dependent nucleoside transporter N-terminus BF35_2944 PF07662 Na+ dependent nucleoside transporter C-terminus BF35_2945 PF01476 LysM domain BF35_2945 PF00877 NlpC/P60 family BF35_2946 PF01063 Amino-transferase class IV BF35_2947 PF00884 Sulfatase BF35_295 PF08281 Sigma-70, region 4 BF35_295 PF04542 Sigma-70 region 2 BF35_2950 PF09988 Uncharacterized metal-binding protein (DUF2227) BF35_2952 PF02652 L-lactate permease BF35_2953 PF13667 ThiC-associated domain BF35_2953 PF01964 Radical SAM ThiC family BF35_2954 PF02040 Arsenical pump membrane protein BF35_2955 PF02322 Cytochrome bd terminal oxidase subunit II BF35_2956 PF01654 Cytochrome bd terminal oxidase subunit I BF35_2959 PF03466 LysR substrate binding domain BF35_2959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_296 PF05223 NTF2-like N-terminal transpeptidase domain BF35_296 PF03717 Penicillin-binding Protein dimerisation domain BF35_296 PF00905 Penicillin binding protein transpeptidase domain BF35_2961 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_2963 PF00375 Sodium:dicarboxylate symporter family BF35_2964 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF35_2965 PF02378 Phosphotransferase system, EIIC BF35_2966 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF35_2967 PF02675 S-adenosylmethionine decarboxylase BF35_2969 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF35_2970 PF02378 Phosphotransferase system, EIIC BF35_2971 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF35_2972 PF11975 Family 4 glycosyl hydrolase C-terminal domain BF35_2972 PF02056 Family 4 glycosyl hydrolase BF35_2973 PF04794 YdjC-like protein BF35_2974 PF02417 Chromate transporter BF35_2976 PF00874 PRD domain BF35_2976 PF00158 Sigma-54 interaction domain BF35_2976 PF03610 PTS system fructose IIA component BF35_2978 PF00953 Glycosyl transferase family 4 BF35_2979 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF35_2979 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF35_2979 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF35_2980 PF02350 UDP-N-acetylglucosamine 2-epimerase BF35_2981 PF03816 Cell envelope-related transcriptional attenuator domain BF35_2982 PF09186 Domain of unknown function (DUF1949) BF35_2982 PF01205 Uncharacterized protein family UPF0029 BF35_2983 PF02645 Uncharacterised protein, DegV family COG1307 BF35_2984 PF01638 HxlR-like helix-turn-helix BF35_2985 PF01476 LysM domain BF35_2985 PF00877 NlpC/P60 family BF35_2986 PF00271 Helicase conserved C-terminal domain BF35_2986 PF04851 Type III restriction enzyme, res subunit BF35_2988 PF00313 'Cold-shock' DNA-binding domain BF35_2989 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BF35_2989 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF35_2990 PF01043 SecA preprotein cross-linking domain BF35_2990 PF07516 SecA Wing and Scaffold domain BF35_2990 PF07517 SecA DEAD-like domain BF35_2990 PF02810 SEC-C motif BF35_2991 PF00472 RF-1 domain BF35_2991 PF03462 PCRF domain BF35_2992 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF35_2993 PF00005 ABC transporter BF35_2994 PF18075 FtsX extracellular domain BF35_2994 PF02687 FtsX-like permease family BF35_2995 PF17820 PDZ domain BF35_2995 PF03572 Peptidase family S41 BF35_2995 PF01471 Putative peptidoglycan binding domain BF35_2996 PF17820 PDZ domain BF35_2997 PF00664 ABC transporter transmembrane region BF35_2997 PF00005 ABC transporter BF35_2998 PF01906 Putative heavy-metal-binding BF35_3 PF08240 Alcohol dehydrogenase GroES-like domain BF35_3 PF00107 Zinc-binding dehydrogenase BF35_30 PF12867 DinB superfamily BF35_300 PF00132 Bacterial transferase hexapeptide (six repeats) BF35_3000 PF03358 NADPH-dependent FMN reductase BF35_3001 PF00376 MerR family regulatory protein BF35_3001 PF09278 MerR, DNA binding BF35_3002 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_3002 PF03466 LysR substrate binding domain BF35_3003 PF03601 Conserved hypothetical protein 698 BF35_3008 PF07739 TipAS antibiotic-recognition domain BF35_3008 PF13411 MerR HTH family regulatory protein BF35_3011 PF00271 Helicase conserved C-terminal domain BF35_3011 PF02151 UvrB/uvrC motif BF35_3011 PF12344 Ultra-violet resistance protein B BF35_3011 PF04851 Type III restriction enzyme, res subunit BF35_3011 PF17757 UvrB interaction domain BF35_3012 PF17760 UvrA interaction domain BF35_3012 PF17755 UvrA DNA-binding domain BF35_3012 PF00005 ABC transporter BF35_3014 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BF35_3015 PF07475 HPr Serine kinase C-terminal domain BF35_3015 PF02603 HPr Serine kinase N terminus BF35_3016 PF01790 Prolipoprotein diacylglyceryl transferase BF35_3017 PF13419 Haloacid dehalogenase-like hydrolase BF35_3018 PF14602 Hexapeptide repeat of succinyl-transferase BF35_302 PF07687 Peptidase dimerisation domain BF35_302 PF01546 Peptidase family M20/M25/M40 BF35_3020 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_3022 PF00293 NUDIX domain BF35_3023 PF03668 P-loop ATPase protein family BF35_3024 PF01933 Uncharacterised protein family UPF0052 BF35_3025 PF02650 WhiA C-terminal HTH domain BF35_3025 PF14527 WhiA LAGLIDADG-like domain BF35_3025 PF10298 WhiA N-terminal LAGLIDADG-like domain BF35_3026 PF00381 PTS HPr component phosphorylation site BF35_3027 PF00574 Clp protease BF35_3028 PF04239 Protein of unknown function (DUF421) BF35_3030 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF35_3031 PF07451 Stage V sporulation protein AD (SpoVAD) BF35_3032 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF35_3036 PF04552 Sigma-54, DNA binding domain BF35_3036 PF04963 Sigma-54 factor, core binding domain BF35_3036 PF00309 Sigma-54 factor, Activator interacting domain (AID) BF35_3038 PF04198 Putative sugar-binding domain BF35_3039 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF35_3039 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF35_304 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BF35_3040 PF00162 Phosphoglycerate kinase BF35_3041 PF00121 Triosephosphate isomerase BF35_3042 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF35_3042 PF01676 Metalloenzyme superfamily BF35_3043 PF03952 Enolase, N-terminal domain BF35_3043 PF00113 Enolase, C-terminal TIM barrel domain BF35_3044 PF01156 Inosine-uridine preferring nucleoside hydrolase BF35_3045 PF03788 LrgA family BF35_3046 PF04172 LrgB-like family BF35_3047 PF03840 Preprotein translocase SecG subunit BF35_3048 PF12146 Serine aminopeptidase, S33 BF35_3049 PF00575 S1 RNA binding domain BF35_3049 PF08206 Ribonuclease B OB domain BF35_3049 PF00773 RNB domain BF35_3049 PF17876 Cold shock domain BF35_305 PF00300 Histidine phosphatase superfamily (branch 1) BF35_3050 PF01668 SmpB protein BF35_3052 PF00486 Transcriptional regulatory protein, C terminal BF35_3052 PF00072 Response regulator receiver domain BF35_3054 PF01032 FecCD transport family BF35_3055 PF01032 FecCD transport family BF35_3056 PF00005 ABC transporter BF35_3057 PF06146 Phosphate-starvation-inducible E BF35_3058 PF13302 Acetyltransferase (GNAT) domain BF35_3059 PF12848 ABC transporter BF35_3059 PF00005 ABC transporter BF35_306 PF01047 MarR family BF35_3060 PF07690 Major Facilitator Superfamily BF35_3063 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF35_3064 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF35_3066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_3066 PF00672 HAMP domain BF35_3066 PF17202 Single cache domain 3 BF35_3068 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF35_3068 PF01565 FAD binding domain BF35_3069 PF01479 S4 domain BF35_3069 PF00579 tRNA synthetases class I (W and Y) BF35_307 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_307 PF00205 Thiamine pyrophosphate enzyme, central domain BF35_307 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF35_3070 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_3071 PF07849 Protein of unknown function (DUF1641) BF35_3073 PF01638 HxlR-like helix-turn-helix BF35_3074 PF07690 Major Facilitator Superfamily BF35_3075 PF00248 Aldo/keto reductase family BF35_3078 PF13460 NAD(P)H-binding BF35_3079 PF01235 Sodium:alanine symporter family BF35_308 PF08241 Methyltransferase domain BF35_3080 PF01235 Sodium:alanine symporter family BF35_3081 PF01773 Na+ dependent nucleoside transporter N-terminus BF35_3081 PF07662 Na+ dependent nucleoside transporter C-terminus BF35_3082 PF01773 Na+ dependent nucleoside transporter N-terminus BF35_3082 PF07662 Na+ dependent nucleoside transporter C-terminus BF35_3084 PF00210 Ferritin-like domain BF35_3086 PF03641 Possible lysine decarboxylase BF35_3090 PF00210 Ferritin-like domain BF35_3091 PF01235 Sodium:alanine symporter family BF35_3092 PF02080 TrkA-C domain BF35_3093 PF00999 Sodium/hydrogen exchanger family BF35_3094 PF09335 SNARE associated Golgi protein BF35_3096 PF01047 MarR family BF35_3097 PF02678 Pirin BF35_3097 PF17954 Quercetinase C-terminal cupin domain BF35_3098 PF07504 Fungalysin/Thermolysin Propeptide Motif BF35_3098 PF01447 Thermolysin metallopeptidase, catalytic domain BF35_3098 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF35_3098 PF03413 Peptidase propeptide and YPEB domain BF35_3099 PF01883 Iron-sulfur cluster assembly protein BF35_310 PF03848 Tellurite resistance protein TehB BF35_310 PF09313 Domain of unknown function (DUF1971) BF35_3100 PF00672 HAMP domain BF35_3100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_3100 PF02743 Cache domain BF35_3101 PF02743 Cache domain BF35_3101 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_3101 PF00672 HAMP domain BF35_3103 PF09334 tRNA synthetases class I (M) BF35_3103 PF08264 Anticodon-binding domain of tRNA BF35_3105 PF16736 Single Cache-like BF35_3105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3105 PF00989 PAS fold BF35_3105 PF00512 His Kinase A (phospho-acceptor) domain BF35_3106 PF00486 Transcriptional regulatory protein, C terminal BF35_3106 PF00072 Response regulator receiver domain BF35_3107 PF03734 L,D-transpeptidase catalytic domain BF35_3107 PF17969 L,D-transpeptidase C-terminal domain BF35_3109 PF09335 SNARE associated Golgi protein BF35_311 PF02687 FtsX-like permease family BF35_311 PF00005 ABC transporter BF35_311 PF12704 MacB-like periplasmic core domain BF35_3116 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_3116 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_3118 PF02096 60Kd inner membrane protein BF35_3121 PF13520 Amino acid permease BF35_3122 PF07690 Major Facilitator Superfamily BF35_3126 PF02743 Cache domain BF35_3126 PF00672 HAMP domain BF35_3126 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_3127 PF01910 Thiamine-binding protein BF35_3128 PF10835 Protein of unknown function (DUF2573) BF35_3129 PF01619 Proline dehydrogenase BF35_3130 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_3130 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_3131 PF14115 YuzL-like protein BF35_3132 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF35_3132 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF35_3132 PF00378 Enoyl-CoA hydratase/isomerase BF35_3133 PF02803 Thiolase, C-terminal domain BF35_3133 PF00108 Thiolase, N-terminal domain BF35_3135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF35_3135 PF02770 Acyl-CoA dehydrogenase, middle domain BF35_3135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF35_3136 PF00753 Metallo-beta-lactamase superfamily BF35_3137 PF13305 Tetracyclin repressor-like, C-terminal domain BF35_3137 PF00440 Bacterial regulatory proteins, tetR family BF35_3142 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF35_3142 PF00056 lactate/malate dehydrogenase, NAD binding domain BF35_315 PF17932 Tetracyclin repressor-like, C-terminal domain BF35_315 PF00440 Bacterial regulatory proteins, tetR family BF35_3153 PF03960 ArsC family BF35_3154 PF01597 Glycine cleavage H-protein BF35_3155 PF01751 Toprim domain BF35_3156 PF00085 Thioredoxin BF35_3158 PF09383 NIL domain BF35_3158 PF00005 ABC transporter BF35_3159 PF00528 Binding-protein-dependent transport system inner membrane component BF35_3160 PF03180 NLPA lipoprotein BF35_3161 PF03180 NLPA lipoprotein BF35_3162 PF00005 ABC transporter BF35_3163 PF01458 Uncharacterized protein family (UPF0051) BF35_3164 PF00266 Aminotransferase class-V BF35_3165 PF01592 NifU-like N terminal domain BF35_3166 PF01458 Uncharacterized protein family (UPF0051) BF35_3167 PF04892 VanZ like family BF35_3168 PF03551 Transcriptional regulator PadR-like family BF35_3169 PF02872 5'-nucleotidase, C-terminal domain BF35_3170 PF08827 Domain of unknown function (DUF1805) BF35_3172 PF01551 Peptidase family M23 BF35_3173 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BF35_3173 PF04055 Radical SAM superfamily BF35_3177 PF10086 YhfC intramembrane metalloprotease BF35_3178 PF13411 MerR HTH family regulatory protein BF35_3178 PF07739 TipAS antibiotic-recognition domain BF35_3179 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF35_318 PF00271 Helicase conserved C-terminal domain BF35_318 PF00270 DEAD/DEAH box helicase BF35_3180 PF06265 Protein of unknown function (DUF1027) BF35_3183 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF35_3184 PF01934 Protein of unknown function DUF86 BF35_3186 PF13344 Haloacid dehalogenase-like hydrolase BF35_3188 PF02525 Flavodoxin-like fold BF35_3190 PF04608 Phosphatidylglycerophosphatase A BF35_3193 PF01106 NifU-like domain BF35_3194 PF07315 Protein of unknown function (DUF1462) BF35_3197 PF08274 PhnA Zinc-Ribbon BF35_3197 PF03831 PhnA domain BF35_3198 PF03649 Uncharacterised protein family (UPF0014) BF35_3199 PF00005 ABC transporter BF35_3199 PF09383 NIL domain BF35_32 PF08000 Bacterial PH domain BF35_3200 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_3201 PF07293 Protein of unknown function (DUF1450) BF35_3202 PF01678 Diaminopimelate epimerase BF35_3203 PF01521 Iron-sulphur cluster biosynthesis BF35_3207 PF04463 Protein of unknown function (DUF523) BF35_321 PF12323 Helix-turn-helix domain BF35_321 PF01385 Probable transposase BF35_321 PF07282 Putative transposase DNA-binding domain BF35_3210 PF06445 GyrI-like small molecule binding domain BF35_3211 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_3212 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_3213 PF13344 Haloacid dehalogenase-like hydrolase BF35_3213 PF00293 NUDIX domain BF35_3215 PF06725 3D domain BF35_3216 PF02789 Cytosol aminopeptidase family, N-terminal domain BF35_3216 PF00883 Cytosol aminopeptidase family, catalytic domain BF35_3217 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF35_3217 PF10372 Bacterial membrane-spanning protein N-terminus BF35_3218 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF35_3218 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF35_3218 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF35_3218 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF35_3219 PF00483 Nucleotidyl transferase BF35_322 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF35_322 PF00753 Metallo-beta-lactamase superfamily BF35_3220 PF02632 BioY family BF35_3222 PF03061 Thioesterase superfamily BF35_3223 PF03129 Anticodon binding domain BF35_3223 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF35_3226 PF03600 Citrate transporter BF35_3227 PF00929 Exonuclease BF35_3228 PF08810 Kinase associated protein B BF35_3231 PF00155 Aminotransferase class I and II BF35_3233 PF00561 alpha/beta hydrolase fold BF35_3233 PF08386 TAP-like protein BF35_3234 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF35_3234 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF35_3235 PF01037 Lrp/AsnC ligand binding domain BF35_3236 PF00155 Aminotransferase class I and II BF35_3237 PF00575 S1 RNA binding domain BF35_3238 PF04070 Domain of unknown function (DUF378) BF35_3239 PF00342 Phosphoglucose isomerase BF35_3240 PF07885 Ion channel BF35_3240 PF02254 TrkA-N domain BF35_3241 PF08868 YugN-like family BF35_3242 PF02308 MgtC family BF35_325 PF07690 Major Facilitator Superfamily BF35_3250 PF05697 Bacterial trigger factor protein (TF) BF35_3250 PF05698 Bacterial trigger factor protein (TF) C-terminus BF35_326 PF01047 MarR family BF35_3269 PF04542 Sigma-70 region 2 BF35_3269 PF08281 Sigma-70, region 4 BF35_327 PF00291 Pyridoxal-phosphate dependent enzyme BF35_3271 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF35_3271 PF00056 lactate/malate dehydrogenase, NAD binding domain BF35_3272 PF02225 PA domain BF35_3272 PF13860 FlgD Ig-like domain BF35_3272 PF05922 Peptidase inhibitor I9 BF35_3272 PF00082 Subtilase family BF35_3274 PF02806 Alpha amylase, C-terminal all-beta domain BF35_3274 PF00128 Alpha amylase, catalytic domain BF35_3274 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF35_3275 PF00483 Nucleotidyl transferase BF35_3276 PF00483 Nucleotidyl transferase BF35_3277 PF08323 Starch synthase catalytic domain BF35_3277 PF00534 Glycosyl transferases group 1 BF35_3278 PF00343 Carbohydrate phosphorylase BF35_328 PF00266 Aminotransferase class-V BF35_3281 PF09278 MerR, DNA binding BF35_3281 PF00376 MerR family regulatory protein BF35_3283 PF00313 'Cold-shock' DNA-binding domain BF35_3284 PF01258 Prokaryotic dksA/traR C4-type zinc finger BF35_3285 PF01040 UbiA prenyltransferase family BF35_3286 PF00425 chorismate binding enzyme BF35_3287 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF35_3287 PF16582 Middle domain of thiamine pyrophosphate BF35_3287 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_3288 PF12697 Alpha/beta hydrolase family BF35_3289 PF00378 Enoyl-CoA hydratase/isomerase BF35_329 PF02660 Glycerol-3-phosphate acyltransferase BF35_3290 PF00501 AMP-binding enzyme BF35_3290 PF13193 AMP-binding enzyme C-terminal domain BF35_3291 PF13378 Enolase C-terminal domain-like BF35_3291 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF35_3292 PF00486 Transcriptional regulatory protein, C terminal BF35_3292 PF00072 Response regulator receiver domain BF35_3293 PF00512 His Kinase A (phospho-acceptor) domain BF35_3293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3294 PF02557 D-alanyl-D-alanine carboxypeptidase BF35_3295 PF01979 Amidohydrolase family BF35_3296 PF03841 L-seryl-tRNA selenium transferase BF35_3297 PF07071 KDGP aldolase BF35_33 PF01734 Patatin-like phospholipase BF35_330 PF01869 BadF/BadG/BcrA/BcrD ATPase family BF35_3300 PF02447 GntP family permease BF35_3302 PF02687 FtsX-like permease family BF35_3303 PF00005 ABC transporter BF35_3304 PF02687 FtsX-like permease family BF35_3305 PF02687 FtsX-like permease family BF35_3306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3307 PF00072 Response regulator receiver domain BF35_3307 PF00486 Transcriptional regulatory protein, C terminal BF35_3308 PF01022 Bacterial regulatory protein, arsR family BF35_3309 PF07853 Protein of unknown function (DUF1648) BF35_3309 PF13630 SdpI/YhfL protein family BF35_331 PF03702 Anhydro-N-acetylmuramic acid kinase BF35_3310 PF12833 Helix-turn-helix domain BF35_3310 PF06445 GyrI-like small molecule binding domain BF35_3311 PF00005 ABC transporter BF35_3312 PF02687 FtsX-like permease family BF35_3314 PF12833 Helix-turn-helix domain BF35_3314 PF02311 AraC-like ligand binding domain BF35_3315 PF00398 Ribosomal RNA adenine dimethylase BF35_3316 PF09335 SNARE associated Golgi protein BF35_3319 PF00248 Aldo/keto reductase family BF35_3325 PF00781 Diacylglycerol kinase catalytic domain BF35_333 PF02378 Phosphotransferase system, EIIC BF35_3331 PF00486 Transcriptional regulatory protein, C terminal BF35_3331 PF00072 Response regulator receiver domain BF35_3332 PF00512 His Kinase A (phospho-acceptor) domain BF35_3332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3332 PF00672 HAMP domain BF35_3333 PF09515 Thiamine transporter protein (Thia_YuaJ) BF35_3335 PF07670 Nucleoside recognition BF35_3335 PF02421 Ferrous iron transport protein B BF35_3335 PF17910 FeoB cytosolic helical domain BF35_3335 PF07664 Ferrous iron transport protein B C terminus BF35_3338 PF04740 LXG domain of WXG superfamily BF35_3338 PF14436 Bacterial EndoU nuclease BF35_3341 PF04012 PspA/IM30 family BF35_3346 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_3346 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_335 PF02638 Glycosyl hydrolase-like 10 BF35_3350 PF10676 Spore germination protein gerPA/gerPF BF35_3351 PF02322 Cytochrome bd terminal oxidase subunit II BF35_3352 PF01654 Cytochrome bd terminal oxidase subunit I BF35_3353 PF01809 Putative membrane protein insertion efficiency factor BF35_3354 PF00484 Carbonic anhydrase BF35_3355 PF02664 S-Ribosylhomocysteinase (LuxS) BF35_3359 PF00293 NUDIX domain BF35_3361 PF13419 Haloacid dehalogenase-like hydrolase BF35_3364 PF00528 Binding-protein-dependent transport system inner membrane component BF35_3365 PF00005 ABC transporter BF35_3369 PF00884 Sulfatase BF35_3370 PF00561 alpha/beta hydrolase fold BF35_3370 PF08386 TAP-like protein BF35_3371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3371 PF00512 His Kinase A (phospho-acceptor) domain BF35_3371 PF00989 PAS fold BF35_3371 PF08447 PAS fold BF35_3372 PF00512 His Kinase A (phospho-acceptor) domain BF35_3372 PF00989 PAS fold BF35_3372 PF13426 PAS domain BF35_3372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3372 PF13188 PAS domain BF35_3384 PF01293 Phosphoenolpyruvate carboxykinase BF35_3385 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF35_3385 PF02772 S-adenosylmethionine synthetase, central domain BF35_3385 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF35_3386 PF13302 Acetyltransferase (GNAT) domain BF35_3389 PF00994 Probable molybdopterin binding domain BF35_3390 PF12804 MobA-like NTP transferase domain BF35_3391 PF00534 Glycosyl transferases group 1 BF35_3391 PF13439 Glycosyltransferase Family 4 BF35_3392 PF01569 PAP2 superfamily BF35_3393 PF00132 Bacterial transferase hexapeptide (six repeats) BF35_3394 PF12146 Serine aminopeptidase, S33 BF35_3395 PF10776 Protein of unknown function (DUF2600) BF35_3399 PF01177 Asp/Glu/Hydantoin racemase BF35_340 PF04542 Sigma-70 region 2 BF35_340 PF08281 Sigma-70, region 4 BF35_340 PF12680 SnoaL-like domain BF35_3401 PF00005 ABC transporter BF35_3402 PF06962 Putative rRNA methylase BF35_3403 PF16199 Radical_SAM C-terminal domain BF35_3403 PF04055 Radical SAM superfamily BF35_3404 PF10732 Protein of unknown function (DUF2524) BF35_3406 PF04235 Protein of unknown function (DUF418) BF35_3406 PF07786 Protein of unknown function (DUF1624) BF35_3407 PF00005 ABC transporter BF35_3409 PF00589 Phage integrase family BF35_341 PF00890 FAD binding domain BF35_3410 PF02080 TrkA-C domain BF35_3411 PF00999 Sodium/hydrogen exchanger family BF35_3412 PF07690 Major Facilitator Superfamily BF35_3413 PF08264 Anticodon-binding domain of tRNA BF35_3413 PF00133 tRNA synthetases class I (I, L, M and V) BF35_3413 PF13603 Leucyl-tRNA synthetase, Domain 2 BF35_3413 PF09334 tRNA synthetases class I (M) BF35_3418 PF03845 Spore germination protein BF35_3419 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_3420 PF00561 alpha/beta hydrolase fold BF35_3422 PF00581 Rhodanese-like domain BF35_3426 PF06463 Molybdenum Cofactor Synthesis C BF35_3426 PF04055 Radical SAM superfamily BF35_3427 PF00899 ThiF family BF35_3428 PF01967 MoaC family BF35_3429 PF03453 MoeA N-terminal region (domain I and II) BF35_3429 PF03454 MoeA C-terminal region (domain IV) BF35_3429 PF00994 Probable molybdopterin binding domain BF35_343 PF02824 TGS domain BF35_343 PF13291 ACT domain BF35_343 PF04607 Region found in RelA / SpoT proteins BF35_3430 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BF35_3431 PF02391 MoaE protein BF35_3434 PF06800 Sugar transport protein BF35_3436 PF02559 CarD-like/TRCF domain BF35_3438 PF10957 Sporulation protein Cse60 BF35_3440 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF35_3441 PF01022 Bacterial regulatory protein, arsR family BF35_3442 PF07690 Major Facilitator Superfamily BF35_3444 PF14667 Polysaccharide biosynthesis C-terminal domain BF35_3444 PF01943 Polysaccharide biosynthesis protein BF35_3445 PF01479 S4 domain BF35_3445 PF00849 RNA pseudouridylate synthase BF35_3446 PF08220 DeoR-like helix-turn-helix domain BF35_3447 PF01546 Peptidase family M20/M25/M40 BF35_3448 PF02834 LigT like Phosphoesterase BF35_3449 PF00128 Alpha amylase, catalytic domain BF35_3449 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF35_3449 PF17999 Pullulanase N1-terminal domain BF35_3450 PF01636 Phosphotransferase enzyme family BF35_3451 PF14165 YtzH-like protein BF35_3452 PF02390 Putative methyltransferase BF35_3453 PF00753 Metallo-beta-lactamase superfamily BF35_3455 PF05343 M42 glutamyl aminopeptidase BF35_3456 PF01931 Protein of unknown function DUF84 BF35_3457 PF00085 Thioredoxin BF35_3458 PF07285 Protein of unknown function (DUF1444) BF35_3459 PF01588 Putative tRNA binding domain BF35_3459 PF14794 Domain of unknown function (DUF4479) BF35_3461 PF08239 Bacterial SH3 domain BF35_3461 PF01520 N-acetylmuramoyl-L-alanine amidase BF35_3462 PF17854 FtsK alpha domain BF35_3462 PF01580 FtsK/SpoIIIE family BF35_3462 PF09397 Ftsk gamma domain BF35_3464 PF08245 Mur ligase middle domain BF35_3464 PF02875 Mur ligase family, glutamate ligase domain BF35_3464 PF01225 Mur ligase family, catalytic domain BF35_3466 PF03551 Transcriptional regulator PadR-like family BF35_3467 PF13411 MerR HTH family regulatory protein BF35_3468 PF00892 EamA-like transporter family BF35_3469 PF13302 Acetyltransferase (GNAT) domain BF35_3473 PF02073 Thermophilic metalloprotease (M29) BF35_3475 PF11009 Protein of unknown function (DUF2847) BF35_3476 PF07537 CamS sex pheromone cAM373 precursor BF35_3477 PF00356 Bacterial regulatory proteins, lacI family BF35_3482 PF01741 Large-conductance mechanosensitive channel, MscL BF35_3483 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF35_3484 PF12796 Ankyrin repeats (3 copies) BF35_3485 PF13426 PAS domain BF35_3485 PF00512 His Kinase A (phospho-acceptor) domain BF35_3485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3485 PF00672 HAMP domain BF35_3486 PF00072 Response regulator receiver domain BF35_3486 PF00486 Transcriptional regulatory protein, C terminal BF35_3489 PF00850 Histone deacetylase domain BF35_3490 PF00571 CBS domain BF35_3491 PF00583 Acetyltransferase (GNAT) family BF35_3492 PF00501 AMP-binding enzyme BF35_3492 PF13193 AMP-binding enzyme C-terminal domain BF35_3494 PF08281 Sigma-70, region 4 BF35_3494 PF04542 Sigma-70 region 2 BF35_3496 PF00579 tRNA synthetases class I (W and Y) BF35_3496 PF01479 S4 domain BF35_3499 PF00163 Ribosomal protein S4/S9 N-terminal domain BF35_3499 PF01479 S4 domain BF35_350 PF07883 Cupin domain BF35_350 PF01381 Helix-turn-helix BF35_3500 PF01053 Cys/Met metabolism PLP-dependent enzyme BF35_3501 PF13185 GAF domain BF35_3502 PF00440 Bacterial regulatory proteins, tetR family BF35_3503 PF00892 EamA-like transporter family BF35_3504 PF03466 LysR substrate binding domain BF35_3504 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_3505 PF06160 Septation ring formation regulator, EzrA BF35_3506 PF00266 Aminotransferase class-V BF35_3507 PF02926 THUMP domain BF35_3507 PF02568 Thiamine biosynthesis protein (ThiI) BF35_3508 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF35_3509 PF00501 AMP-binding enzyme BF35_3509 PF13193 AMP-binding enzyme C-terminal domain BF35_351 PF01810 LysE type translocator BF35_3511 PF07969 Amidohydrolase family BF35_3512 PF01513 ATP-NAD kinase BF35_3514 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF35_3515 PF08534 Redoxin BF35_3516 PF02384 N-6 DNA Methylase BF35_3517 PF00871 Acetokinase family BF35_3520 PF12787 EcsC protein family BF35_3521 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_3521 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_3525 PF00764 Arginosuccinate synthase BF35_3526 PF00206 Lyase BF35_3526 PF14698 Argininosuccinate lyase C-terminal BF35_3529 PF00582 Universal stress protein family BF35_3531 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF35_3531 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF35_3534 PF01381 Helix-turn-helix BF35_3536 PF07883 Cupin domain BF35_3537 PF12746 GNAT acetyltransferase BF35_3539 PF08281 Sigma-70, region 4 BF35_3539 PF04542 Sigma-70 region 2 BF35_354 PF00005 ABC transporter BF35_354 PF00664 ABC transporter transmembrane region BF35_3545 PF01321 Creatinase/Prolidase N-terminal domain BF35_3545 PF00557 Metallopeptidase family M24 BF35_3548 PF03061 Thioesterase superfamily BF35_3548 PF00571 CBS domain BF35_3548 PF07085 DRTGG domain BF35_3548 PF00392 Bacterial regulatory proteins, gntR family BF35_355 PF00005 ABC transporter BF35_355 PF00664 ABC transporter transmembrane region BF35_3550 PF14007 YtpI-like protein BF35_3551 PF01368 DHH family BF35_3551 PF02272 DHHA1 domain BF35_3553 PF14034 Sporulation protein YtrH BF35_3554 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF35_3554 PF14579 Helix-hairpin-helix motif BF35_3554 PF02811 PHP domain BF35_3554 PF01336 OB-fold nucleic acid binding domain BF35_3554 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF35_3555 PF00390 Malic enzyme, N-terminal domain BF35_3555 PF03949 Malic enzyme, NAD binding domain BF35_3556 PF00392 Bacterial regulatory proteins, gntR family BF35_3557 PF17848 Acetyl-coA carboxylase zinc finger domain BF35_3557 PF01039 Carboxyl transferase domain BF35_3558 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF35_3559 PF00365 Phosphofructokinase BF35_3560 PF00224 Pyruvate kinase, barrel domain BF35_3560 PF02887 Pyruvate kinase, alpha/beta domain BF35_3560 PF00391 PEP-utilising enzyme, mobile domain BF35_3561 PF04186 FxsA cytoplasmic membrane protein BF35_3562 PF01594 AI-2E family transporter BF35_3563 PF04284 Protein of unknown function (DUF441) BF35_3564 PF00285 Citrate synthase, C-terminal domain BF35_3565 PF00180 Isocitrate/isopropylmalate dehydrogenase BF35_3566 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF35_3566 PF00056 lactate/malate dehydrogenase, NAD binding domain BF35_3570 PF00486 Transcriptional regulatory protein, C terminal BF35_3570 PF00072 Response regulator receiver domain BF35_3571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3571 PF00512 His Kinase A (phospho-acceptor) domain BF35_3571 PF16736 Single Cache-like BF35_3571 PF00989 PAS fold BF35_3572 PF01367 5'-3' exonuclease, C-terminal SAM fold BF35_3572 PF00476 DNA polymerase family A BF35_3572 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF35_3573 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BF35_3573 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BF35_3573 PF06827 Zinc finger found in FPG and IleRS BF35_3574 PF02659 Putative manganese efflux pump BF35_3575 PF01121 Dephospho-CoA kinase BF35_3576 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF35_3576 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF35_3577 PF02675 S-adenosylmethionine decarboxylase BF35_3578 PF03477 ATP cone domain BF35_3579 PF07261 Replication initiation and membrane attachment BF35_358 PF03475 3-alpha domain BF35_358 PF03473 MOSC domain BF35_3580 PF07319 Primosomal protein DnaI N-terminus BF35_3580 PF01695 IstB-like ATP binding protein BF35_3581 PF08812 YtxC-like family BF35_3582 PF03129 Anticodon binding domain BF35_3582 PF02824 TGS domain BF35_3582 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF35_3582 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF35_3583 PF00707 Translation initiation factor IF-3, C-terminal domain BF35_3583 PF05198 Translation initiation factor IF-3, N-terminal domain BF35_3584 PF01632 Ribosomal protein L35 BF35_3585 PF00453 Ribosomal protein L20 BF35_3587 PF05343 M42 glutamyl aminopeptidase BF35_3588 PF00440 Bacterial regulatory proteins, tetR family BF35_3588 PF16859 Tetracyclin repressor-like, C-terminal domain BF35_359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_359 PF03466 LysR substrate binding domain BF35_3590 PF07690 Major Facilitator Superfamily BF35_3592 PF01966 HD domain BF35_3593 PF14098 Small, acid-soluble spore protein I BF35_3594 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF35_3594 PF00588 SpoU rRNA Methylase family BF35_3595 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF35_3595 PF01409 tRNA synthetases class II core domain (F) BF35_3596 PF03483 B3/4 domain BF35_3596 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BF35_3596 PF01588 Putative tRNA binding domain BF35_3596 PF03147 Ferredoxin-fold anticodon binding domain BF35_3596 PF03484 tRNA synthetase B5 domain BF35_3597 PF00152 tRNA synthetases class II (D, K and N) BF35_3597 PF01336 OB-fold nucleic acid binding domain BF35_3601 PF01351 Ribonuclease HII BF35_3601 PF11858 Domain of unknown function (DUF3378) BF35_3602 PF05164 Cell division protein ZapA BF35_3603 PF02674 Colicin V production protein BF35_3604 PF02811 PHP domain BF35_3604 PF14791 DNA polymerase beta thumb BF35_3604 PF14716 Helix-hairpin-helix domain BF35_3605 PF00488 MutS domain V BF35_3605 PF01713 Smr domain BF35_3607 PF00849 RNA pseudouridylate synthase BF35_3607 PF01479 S4 domain BF35_3608 PF05525 Branched-chain amino acid transport protein BF35_3609 PF05031 Iron Transport-associated domain BF35_3611 PF05031 Iron Transport-associated domain BF35_3612 PF01497 Periplasmic binding protein BF35_3613 PF01032 FecCD transport family BF35_3614 PF00005 ABC transporter BF35_3615 PF04203 Sortase domain BF35_3616 PF03992 Antibiotic biosynthesis monooxygenase BF35_3617 PF17785 PUA-like domain BF35_3617 PF10672 S-adenosylmethionine-dependent methyltransferase BF35_3618 PF09962 Uncharacterized conserved protein (DUF2196) BF35_362 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF35_362 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF35_3620 PF00486 Transcriptional regulatory protein, C terminal BF35_3620 PF00072 Response regulator receiver domain BF35_3621 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3621 PF00512 His Kinase A (phospho-acceptor) domain BF35_3622 PF00005 ABC transporter BF35_3628 PF05163 DinB family BF35_363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_363 PF03466 LysR substrate binding domain BF35_3630 PF13193 AMP-binding enzyme C-terminal domain BF35_3630 PF00501 AMP-binding enzyme BF35_3631 PF00440 Bacterial regulatory proteins, tetR family BF35_3631 PF08359 YsiA-like protein, C-terminal region BF35_3632 PF00378 Enoyl-CoA hydratase/isomerase BF35_3633 PF01012 Electron transfer flavoprotein domain BF35_3634 PF01012 Electron transfer flavoprotein domain BF35_3634 PF00766 Electron transfer flavoprotein FAD-binding domain BF35_3635 PF00085 Thioredoxin BF35_3636 PF01541 GIY-YIG catalytic domain BF35_3636 PF02151 UvrB/uvrC motif BF35_3636 PF08459 UvrC Helix-hairpin-helix N-terminal BF35_3637 PF10702 Protein of unknown function (DUF2507) BF35_3638 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BF35_3639 PF00890 FAD binding domain BF35_3639 PF02910 Fumarate reductase flavoprotein C-term BF35_3640 PF13085 2Fe-2S iron-sulfur cluster binding domain BF35_3640 PF13183 4Fe-4S dicluster domain BF35_3641 PF03061 Thioesterase superfamily BF35_3642 PF02557 D-alanyl-D-alanine carboxypeptidase BF35_3643 PF01618 MotA/TolQ/ExbB proton channel family BF35_3644 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF35_3644 PF00691 OmpA family BF35_3645 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BF35_3646 PF00005 ABC transporter BF35_3646 PF13732 Domain of unknown function (DUF4162) BF35_3648 PF02082 Transcriptional regulator BF35_3649 PF00230 Major intrinsic protein BF35_3650 PF13536 Putative multidrug resistance efflux transporter BF35_3651 PF01381 Helix-turn-helix BF35_3651 PF07883 Cupin domain BF35_3652 PF04024 PspC domain BF35_3653 PF07969 Amidohydrolase family BF35_3654 PF00860 Permease family BF35_3655 PF00196 Bacterial regulatory proteins, luxR family BF35_3658 PF00440 Bacterial regulatory proteins, tetR family BF35_3660 PF07690 Major Facilitator Superfamily BF35_3661 PF01177 Asp/Glu/Hydantoin racemase BF35_3662 PF10646 Sporulation and spore germination BF35_3663 PF03725 3' exoribonuclease family, domain 2 BF35_3663 PF01138 3' exoribonuclease family, domain 1 BF35_3664 PF01725 Ham1 family BF35_3665 PF12850 Calcineurin-like phosphoesterase superfamily domain BF35_3675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF35_3675 PF05698 Bacterial trigger factor protein (TF) C-terminus BF35_3675 PF05697 Bacterial trigger factor protein (TF) BF35_3676 PF10431 C-terminal, D2-small domain, of ClpB protein BF35_3676 PF06689 ClpX C4-type zinc finger BF35_3676 PF07724 AAA domain (Cdc48 subfamily) BF35_3677 PF05362 Lon protease (S16) C-terminal proteolytic domain BF35_3677 PF00004 ATPase family associated with various cellular activities (AAA) BF35_3678 PF00004 ATPase family associated with various cellular activities (AAA) BF35_3678 PF05362 Lon protease (S16) C-terminal proteolytic domain BF35_3678 PF02190 ATP-dependent protease La (LON) substrate-binding domain BF35_3679 PF01926 50S ribosome-binding GTPase BF35_3680 PF02566 OsmC-like protein BF35_3681 PF01047 MarR family BF35_3682 PF01488 Shikimate / quinate 5-dehydrogenase BF35_3682 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BF35_3682 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BF35_3683 PF01578 Cytochrome C assembly protein BF35_3684 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BF35_3684 PF03900 Porphobilinogen deaminase, C-terminal domain BF35_3685 PF02602 Uroporphyrinogen-III synthase HemD BF35_3686 PF00490 Delta-aminolevulinic acid dehydratase BF35_3687 PF00202 Aminotransferase class-III BF35_3688 PF01476 LysM domain BF35_369 PF00313 'Cold-shock' DNA-binding domain BF35_3690 PF08264 Anticodon-binding domain of tRNA BF35_3690 PF00133 tRNA synthetases class I (I, L, M and V) BF35_3690 PF10458 Valyl tRNA synthetase tRNA binding arm BF35_3691 PF08245 Mur ligase middle domain BF35_3691 PF02875 Mur ligase family, glutamate ligase domain BF35_3693 PF02545 Maf-like protein BF35_3694 PF04002 RadC-like JAB domain BF35_3696 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF35_3697 PF04002 RadC-like JAB domain BF35_3699 PF04085 rod shape-determining protein MreC BF35_370 PF13302 Acetyltransferase (GNAT) domain BF35_3701 PF03775 Septum formation inhibitor MinC, C-terminal domain BF35_3702 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF35_3703 PF01551 Peptidase family M23 BF35_3704 PF02163 Peptidase family M50 BF35_3705 PF10150 Ribonuclease E/G family BF35_3705 PF00575 S1 RNA binding domain BF35_3706 PF00829 Ribosomal prokaryotic L21 protein BF35_3707 PF04327 Cysteine protease Prp BF35_3708 PF01016 Ribosomal L27 protein BF35_3709 PF14682 Sporulation initiation phospho-transferase B, C-terminal BF35_3709 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF35_3710 PF09269 Domain of unknown function (DUF1967) BF35_3710 PF01926 50S ribosome-binding GTPase BF35_3710 PF01018 GTP1/OBG BF35_3711 PF00486 Transcriptional regulatory protein, C terminal BF35_3711 PF00072 Response regulator receiver domain BF35_3712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_3713 PF00005 ABC transporter BF35_3714 PF02687 FtsX-like permease family BF35_3715 PF02687 FtsX-like permease family BF35_3716 PF00800 Prephenate dehydratase BF35_3716 PF01842 ACT domain BF35_3717 PF03475 3-alpha domain BF35_3717 PF03473 MOSC domain BF35_3718 PF02829 3H domain BF35_3718 PF08279 HTH domain BF35_3719 PF00266 Aminotransferase class-V BF35_3720 PF00890 FAD binding domain BF35_3720 PF02910 Fumarate reductase flavoprotein C-term BF35_3721 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF35_3721 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF35_3722 PF02445 Quinolinate synthetase A protein BF35_3723 PF01476 LysM domain BF35_3726 PF01022 Bacterial regulatory protein, arsR family BF35_3727 PF00892 EamA-like transporter family BF35_3729 PF01497 Periplasmic binding protein BF35_373 PF00561 alpha/beta hydrolase fold BF35_3730 PF07499 RuvA, C-terminal domain BF35_3730 PF01330 RuvA N terminal domain BF35_3731 PF05491 RuvB C-terminal winged helix domain BF35_3731 PF17864 RuvB AAA lid domain BF35_3731 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF35_3732 PF11146 Protein of unknown function (DUF2905) BF35_3733 PF02547 Queuosine biosynthesis protein BF35_3734 PF01702 Queuine tRNA-ribosyltransferase BF35_3735 PF02699 Preprotein translocase subunit BF35_3737 PF04239 Protein of unknown function (DUF421) BF35_3738 PF01943 Polysaccharide biosynthesis protein BF35_3738 PF14667 Polysaccharide biosynthesis C-terminal domain BF35_3739 PF13797 Post-transcriptional regulator BF35_3740 PF02355 Protein export membrane protein BF35_3740 PF07549 SecD/SecF GG Motif BF35_3741 PF16916 Dimerisation domain of Zinc Transporter BF35_3741 PF01545 Cation efflux family BF35_3742 PF01368 DHH family BF35_3742 PF02272 DHHA1 domain BF35_3742 PF17768 RecJ OB domain BF35_3742 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BF35_3743 PF00156 Phosphoribosyl transferase domain BF35_3744 PF13291 ACT domain BF35_3744 PF04607 Region found in RelA / SpoT proteins BF35_3744 PF02824 TGS domain BF35_3745 PF02580 D-Tyr-tRNA(Tyr) deacylase BF35_3747 PF13393 Histidyl-tRNA synthetase BF35_3747 PF03129 Anticodon binding domain BF35_3748 PF02938 GAD domain BF35_3748 PF00152 tRNA synthetases class II (D, K and N) BF35_3748 PF01336 OB-fold nucleic acid binding domain BF35_3749 PF00899 ThiF family BF35_3751 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF35_3751 PF12002 MgsA AAA+ ATPase C terminal BF35_3751 PF16193 AAA C-terminal domain BF35_3752 PF02082 Transcriptional regulator BF35_3753 PF00266 Aminotransferase class-V BF35_3756 PF13538 UvrD-like helicase C-terminal domain BF35_3756 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BF35_3756 PF14490 Helix-hairpin-helix containing domain BF35_3760 PF01594 AI-2E family transporter BF35_3762 PF02272 DHHA1 domain BF35_3762 PF01411 tRNA synthetases class II (A) BF35_3762 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF35_3763 PF06135 IreB regulatory phosphoprotein BF35_3764 PF03652 Holliday junction resolvase BF35_3765 PF06949 Protein of unknown function (DUF1292) BF35_3766 PF02618 YceG-like family BF35_3770 PF00485 Phosphoribulokinase / Uridine kinase family BF35_3771 PF03449 Transcription elongation factor, N-terminal BF35_3771 PF01272 Transcription elongation factor, GreA/GreB, C-term BF35_3772 PF03717 Penicillin-binding Protein dimerisation domain BF35_3772 PF00905 Penicillin binding protein transpeptidase domain BF35_3775 PF08241 Methyltransferase domain BF35_3776 PF01048 Phosphorylase superfamily BF35_3777 PF00291 Pyridoxal-phosphate dependent enzyme BF35_3778 PF01053 Cys/Met metabolism PLP-dependent enzyme BF35_3779 PF00171 Aldehyde dehydrogenase family BF35_3779 PF00465 Iron-containing alcohol dehydrogenase BF35_378 PF00583 Acetyltransferase (GNAT) family BF35_3781 PF01497 Periplasmic binding protein BF35_3782 PF01032 FecCD transport family BF35_3783 PF00005 ABC transporter BF35_3790 PF07681 DoxX BF35_3791 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_3793 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BF35_3794 PF00082 Subtilase family BF35_3794 PF02225 PA domain BF35_3794 PF05922 Peptidase inhibitor I9 BF35_3794 PF13860 FlgD Ig-like domain BF35_38 PF09234 Domain of unknown function (DUF1963) BF35_3801 PF08386 TAP-like protein BF35_3801 PF00561 alpha/beta hydrolase fold BF35_3802 PF00583 Acetyltransferase (GNAT) family BF35_3803 PF00245 Alkaline phosphatase BF35_3805 PF04607 Region found in RelA / SpoT proteins BF35_3806 PF00881 Nitroreductase family BF35_3807 PF00471 Ribosomal protein L33 BF35_3808 PF16244 Domain of unknown function (DUF4901) BF35_381 PF00302 Chloramphenicol acetyltransferase BF35_3810 PF04542 Sigma-70 region 2 BF35_3810 PF04545 Sigma-70, region 4 BF35_3811 PF02666 Phosphatidylserine decarboxylase BF35_3814 PF01926 50S ribosome-binding GTPase BF35_3815 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BF35_3815 PF08501 Shikimate dehydrogenase substrate binding domain BF35_3815 PF01488 Shikimate / quinate 5-dehydrogenase BF35_3816 PF01985 CRS1 / YhbY (CRM) domain BF35_3817 PF01467 Cytidylyltransferase-like BF35_3818 PF01966 HD domain BF35_3820 PF13649 Methyltransferase domain BF35_3821 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF35_3821 PF03807 NADP oxidoreductase coenzyme F420-dependent BF35_3822 PF10531 SLBB domain BF35_3823 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF35_3824 PF03772 Competence protein BF35_3824 PF00753 Metallo-beta-lactamase superfamily BF35_3824 PF13567 Domain of unknown function (DUF4131) BF35_3825 PF14141 YqzM-like protein BF35_3826 PF06144 DNA polymerase III, delta subunit BF35_3827 PF01649 Ribosomal protein S20 BF35_3828 PF03418 Germination protease BF35_383 PF03176 MMPL family BF35_3830 PF00679 Elongation factor G C-terminus BF35_3830 PF06421 GTP-binding protein LepA C-terminus BF35_3830 PF00009 Elongation factor Tu GTP binding domain BF35_3830 PF03144 Elongation factor Tu domain 2 BF35_3831 PF01638 HxlR-like helix-turn-helix BF35_3832 PF04055 Radical SAM superfamily BF35_3832 PF06969 HemN C-terminal domain BF35_3833 PF01628 HrcA protein C terminal domain BF35_3834 PF01025 GrpE BF35_3835 PF00012 Hsp70 protein BF35_3836 PF00226 DnaJ domain BF35_3836 PF01556 DnaJ C terminal domain BF35_3836 PF00684 DnaJ central domain BF35_3838 PF04452 RNA methyltransferase BF35_3839 PF00919 Uncharacterized protein family UPF0004 BF35_3839 PF04055 Radical SAM superfamily BF35_3839 PF01938 TRAM domain BF35_3840 PF01165 Ribosomal protein S21 BF35_3841 PF09424 Yqey-like protein BF35_3842 PF07873 YabP family BF35_3843 PF06898 Putative stage IV sporulation protein YqfD BF35_3844 PF02562 PhoH-like protein BF35_3845 PF07697 7TM-HD extracellular BF35_3845 PF01966 HD domain BF35_3845 PF07698 7TM receptor with intracellular HD hydrolase BF35_3846 PF02130 Uncharacterized protein family UPF0054 BF35_3847 PF01219 Prokaryotic diacylglycerol kinase BF35_3848 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF35_3849 PF01926 50S ribosome-binding GTPase BF35_3849 PF07650 KH domain BF35_385 PF00753 Metallo-beta-lactamase superfamily BF35_3851 PF02565 Recombination protein O C terminal BF35_3851 PF11967 Recombination protein O N terminal BF35_3852 PF00571 CBS domain BF35_3852 PF08279 HTH domain BF35_3853 PF03618 Kinase/pyrophosphorylase BF35_3854 PF01807 CHC2 zinc finger BF35_3854 PF08275 DNA primase catalytic core, N-terminal domain BF35_3854 PF10410 DnaB-helicase binding domain of primase BF35_3855 PF04545 Sigma-70, region 4 BF35_3855 PF04539 Sigma-70 region 3 BF35_3855 PF04542 Sigma-70 region 2 BF35_3855 PF00140 Sigma-70 factor, region 1.2 BF35_3855 PF03979 Sigma-70 factor, region 1.1 BF35_3856 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF35_3857 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BF35_3858 PF01784 NIF3 (NGG1p interacting factor 3) BF35_3859 PF02401 LytB protein BF35_3861 PF00271 Helicase conserved C-terminal domain BF35_3861 PF00270 DEAD/DEAH box helicase BF35_3862 PF01261 Xylose isomerase-like TIM barrel BF35_3863 PF11116 Protein of unknown function (DUF2624) BF35_3864 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_3864 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_3865 PF00005 ABC transporter BF35_3866 PF00950 ABC 3 transport family BF35_3867 PF01475 Ferric uptake regulator family BF35_3868 PF04551 GcpE protein BF35_3872 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF35_3872 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF35_3873 PF07690 Major Facilitator Superfamily BF35_3875 PF12849 PBP superfamily domain BF35_3876 PF00528 Binding-protein-dependent transport system inner membrane component BF35_3877 PF00528 Binding-protein-dependent transport system inner membrane component BF35_3878 PF00005 ABC transporter BF35_3879 PF01895 PhoU domain BF35_3880 PF00483 Nucleotidyl transferase BF35_3881 PF00471 Ribosomal protein L33 BF35_3882 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF35_3883 PF06014 Bacterial protein of unknown function (DUF910) BF35_3884 PF00480 ROK family BF35_3885 PF10958 Protein of unknown function (DUF2759) BF35_3886 PF00753 Metallo-beta-lactamase superfamily BF35_3888 PF01022 Bacterial regulatory protein, arsR family BF35_3890 PF01053 Cys/Met metabolism PLP-dependent enzyme BF35_3891 PF01053 Cys/Met metabolism PLP-dependent enzyme BF35_3892 PF02574 Homocysteine S-methyltransferase BF35_3892 PF02219 Methylenetetrahydrofolate reductase BF35_3893 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF35_3893 PF02310 B12 binding domain BF35_3893 PF00809 Pterin binding enzyme BF35_3893 PF02607 B12 binding domain BF35_3893 PF02574 Homocysteine S-methyltransferase BF35_3894 PF03033 Glycosyltransferase family 28 N-terminal domain BF35_3894 PF04101 Glycosyltransferase family 28 C-terminal domain BF35_3900 PF00375 Sodium:dicarboxylate symporter family BF35_3901 PF11117 Protein of unknown function (DUF2626) BF35_3903 PF00437 Type II/IV secretion system protein BF35_3906 PF00239 Resolvase, N terminal domain BF35_3906 PF02796 Helix-turn-helix domain of resolvase BF35_3917 PF00437 Type II/IV secretion system protein BF35_3918 PF00482 Type II secretion system (T2SS), protein F BF35_3920 PF07963 Prokaryotic N-terminal methylation motif BF35_3925 PF01202 Shikimate kinase BF35_3926 PF14038 YqzE-like protein BF35_3930 PF11079 Bacterial protein YqhG of unknown function BF35_3931 PF00176 SNF2 family N-terminal domain BF35_3931 PF00271 Helicase conserved C-terminal domain BF35_3932 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF35_3932 PF01571 Aminomethyltransferase folate-binding domain BF35_3933 PF02347 Glycine cleavage system P-protein BF35_3934 PF02347 Glycine cleavage system P-protein BF35_3937 PF00392 Bacterial regulatory proteins, gntR family BF35_3938 PF00005 ABC transporter BF35_3945 PF00893 Small Multidrug Resistance protein BF35_3946 PF00893 Small Multidrug Resistance protein BF35_3948 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF35_3948 PF00356 Bacterial regulatory proteins, lacI family BF35_395 PF13649 Methyltransferase domain BF35_3950 PF00581 Rhodanese-like domain BF35_3951 PF03099 Biotin/lipoate A/B protein ligase family BF35_3956 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF35_3956 PF02742 Iron dependent repressor, metal binding and dimerisation domain BF35_3958 PF13419 Haloacid dehalogenase-like hydrolase BF35_3959 PF07136 Protein of unknown function (DUF1385) BF35_3960 PF11085 Conserved membrane protein YqhR BF35_3961 PF01220 Dehydroquinase class II BF35_3962 PF01321 Creatinase/Prolidase N-terminal domain BF35_3962 PF00557 Metallopeptidase family M24 BF35_3963 PF01132 Elongation factor P (EF-P) OB domain BF35_3963 PF08207 Elongation factor P (EF-P) KOW-like domain BF35_3963 PF09285 Elongation factor P, C-terminal BF35_3968 PF09548 Stage III sporulation protein AB (spore_III_AB) BF35_3969 PF06686 Stage III sporulation protein AC/AD protein family BF35_397 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_397 PF00205 Thiamine pyrophosphate enzyme, central domain BF35_397 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF35_3970 PF06686 Stage III sporulation protein AC/AD protein family BF35_3971 PF09546 Stage III sporulation protein AE (spore_III_AE) BF35_3972 PF09581 Stage III sporulation protein AF (Spore_III_AF) BF35_3974 PF12685 SpoIIIAH-like protein BF35_3976 PF00364 Biotin-requiring enzyme BF35_3977 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF35_3977 PF02785 Biotin carboxylase C-terminal domain BF35_3977 PF00289 Biotin carboxylase, N-terminal domain BF35_3978 PF03780 Asp23 family, cell envelope-related function BF35_3979 PF01029 NusB family BF35_3980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF35_3980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF35_3981 PF02601 Exonuclease VII, large subunit BF35_3981 PF13742 OB-fold nucleic acid binding domain BF35_3982 PF02609 Exonuclease VII small subunit BF35_3983 PF00348 Polyprenyl synthetase BF35_3984 PF02779 Transketolase, pyrimidine binding domain BF35_3984 PF02780 Transketolase, C-terminal domain BF35_3984 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF35_3985 PF01479 S4 domain BF35_3985 PF01728 FtsJ-like methyltransferase BF35_3986 PF02863 Arginine repressor, C-terminal domain BF35_3986 PF01316 Arginine repressor, DNA binding domain BF35_3987 PF13476 AAA domain BF35_3988 PF17820 PDZ domain BF35_3988 PF05580 SpoIVB peptidase S55 BF35_3989 PF08769 Sporulation initiation factor Spo0A C terminal BF35_3989 PF00072 Response regulator receiver domain BF35_3991 PF13411 MerR HTH family regulatory protein BF35_4 PF00392 Bacterial regulatory proteins, gntR family BF35_4 PF00155 Aminotransferase class I and II BF35_400 PF07690 Major Facilitator Superfamily BF35_4000 PF00589 Phage integrase family BF35_4008 PF14174 YycC-like protein BF35_4009 PF03009 Glycerophosphoryl diester phosphodiesterase family BF35_4011 PF00989 PAS fold BF35_4011 PF00158 Sigma-54 interaction domain BF35_4011 PF02954 Bacterial regulatory protein, Fis family BF35_4012 PF01515 Phosphate acetyl/butaryl transferase BF35_4013 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF35_4013 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF35_4014 PF00871 Acetokinase family BF35_4015 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_4015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF35_4016 PF00676 Dehydrogenase E1 component BF35_4017 PF02779 Transketolase, pyrimidine binding domain BF35_4017 PF02780 Transketolase, C-terminal domain BF35_4018 PF02817 e3 binding domain BF35_4018 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF35_4018 PF00364 Biotin-requiring enzyme BF35_4019 PF01098 Cell cycle protein BF35_402 PF00005 ABC transporter BF35_4020 PF04239 Protein of unknown function (DUF421) BF35_4021 PF00293 NUDIX domain BF35_4021 PF09297 NADH pyrophosphatase zinc ribbon domain BF35_4022 PF11208 Protein of unknown function (DUF2992) BF35_4023 PF06491 Disulphide isomerase BF35_4024 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF35_4025 PF00528 Binding-protein-dependent transport system inner membrane component BF35_4026 PF00005 ABC transporter BF35_4027 PF11728 Putative aromatic acid exporter C-terminal domain BF35_4027 PF06081 Aromatic acid exporter family member 1 BF35_4028 PF03734 L,D-transpeptidase catalytic domain BF35_403 PF11188 Protein of unknown function (DUF2975) BF35_4030 PF13302 Acetyltransferase (GNAT) domain BF35_4031 PF07687 Peptidase dimerisation domain BF35_4031 PF01546 Peptidase family M20/M25/M40 BF35_4032 PF11798 IMS family HHH motif BF35_4032 PF11799 impB/mucB/samB family C-terminal domain BF35_4032 PF00817 impB/mucB/samB family BF35_4034 PF12706 Beta-lactamase superfamily domain BF35_4034 PF00753 Metallo-beta-lactamase superfamily BF35_4035 PF03315 Serine dehydratase beta chain BF35_4035 PF01842 ACT domain BF35_4036 PF03313 Serine dehydratase alpha chain BF35_4037 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF35_4037 PF03807 NADP oxidoreductase coenzyme F420-dependent BF35_4038 PF00753 Metallo-beta-lactamase superfamily BF35_4039 PF00106 short chain dehydrogenase BF35_404 PF03129 Anticodon binding domain BF35_404 PF02824 TGS domain BF35_404 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF35_404 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF35_4041 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF35_4041 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF35_4042 PF01960 ArgJ family BF35_4043 PF00696 Amino acid kinase family BF35_4044 PF00202 Aminotransferase class-III BF35_4045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF35_4045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF35_4048 PF13404 AsnC-type helix-turn-helix domain BF35_4048 PF01037 Lrp/AsnC ligand binding domain BF35_405 PF01479 S4 domain BF35_405 PF00849 RNA pseudouridylate synthase BF35_4050 PF02872 5'-nucleotidase, C-terminal domain BF35_4050 PF00149 Calcineurin-like phosphoesterase BF35_4053 PF00202 Aminotransferase class-III BF35_4055 PF00155 Aminotransferase class I and II BF35_4056 PF12697 Alpha/beta hydrolase family BF35_4056 PF08241 Methyltransferase domain BF35_4057 PF13847 Methyltransferase domain BF35_4058 PF06968 Biotin and Thiamin Synthesis associated domain BF35_4058 PF04055 Radical SAM superfamily BF35_406 PF16291 Domain of unknown function (DUF4937 BF35_4060 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF35_4061 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BF35_4061 PF00925 GTP cyclohydrolase II BF35_4062 PF00677 Lumazine binding domain BF35_4063 PF01872 RibD C-terminal domain BF35_4063 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF35_4065 PF10827 Protein of unknown function (DUF2552) BF35_4066 PF12146 Serine aminopeptidase, S33 BF35_4067 PF00583 Acetyltransferase (GNAT) family BF35_4068 PF00356 Bacterial regulatory proteins, lacI family BF35_4069 PF13726 Na+-H+ antiporter family BF35_4069 PF03553 Na+/H+ antiporter family BF35_4070 PF12146 Serine aminopeptidase, S33 BF35_4072 PF00149 Calcineurin-like phosphoesterase BF35_4072 PF02872 5'-nucleotidase, C-terminal domain BF35_4072 PF00565 Staphylococcal nuclease homologue BF35_4072 PF00746 LPXTG cell wall anchor motif BF35_4074 PF04229 GrpB protein BF35_4074 PF13673 Acetyltransferase (GNAT) domain BF35_4075 PF00248 Aldo/keto reductase family BF35_4076 PF00248 Aldo/keto reductase family BF35_4077 PF13072 Mother cell inhibitor of FtsZ BF35_4078 PF00293 NUDIX domain BF35_4080 PF01944 Stage II sporulation protein M BF35_4081 PF01475 Ferric uptake regulator family BF35_4082 PF14004 Protein of unknown function (DUF4227) BF35_4083 PF02899 Phage integrase, N-terminal SAM-like domain BF35_4083 PF00589 Phage integrase family BF35_4085 PF01676 Metalloenzyme superfamily BF35_4086 PF01048 Phosphorylase superfamily BF35_4087 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF35_4087 PF00591 Glycosyl transferase family, a/b domain BF35_4087 PF02885 Glycosyl transferase family, helical bundle domain BF35_4088 PF01544 CorA-like Mg2+ transporter protein BF35_4089 PF00860 Permease family BF35_409 PF01235 Sodium:alanine symporter family BF35_4091 PF01047 MarR family BF35_4095 PF00005 ABC transporter BF35_4096 PF00392 Bacterial regulatory proteins, gntR family BF35_4097 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_4097 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_4098 PF01740 STAS domain BF35_4099 PF13581 Histidine kinase-like ATPase domain BF35_410 PF00082 Subtilase family BF35_4100 PF04545 Sigma-70, region 4 BF35_4100 PF04539 Sigma-70 region 3 BF35_4100 PF04542 Sigma-70 region 2 BF35_4101 PF00209 Sodium:neurotransmitter symporter family BF35_4103 PF12164 Stage V sporulation protein AA BF35_4104 PF13782 Stage V sporulation protein AB BF35_4105 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF35_4106 PF07451 Stage V sporulation protein AD (SpoVAD) BF35_4107 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF35_4108 PF14097 Stage V sporulation protein AE1 BF35_4109 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_411 PF05163 DinB family BF35_4111 PF06207 Protein of unknown function (DUF1002) BF35_4112 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF35_4113 PF00583 Acetyltransferase (GNAT) family BF35_4114 PF03745 Domain of unknown function (DUF309) BF35_4116 PF02616 Segregation and condensation protein ScpA BF35_4117 PF04079 Segregation and condensation complex subunit ScpB BF35_4119 PF01979 Amidohydrolase family BF35_4120 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF35_4123 PF03123 CAT RNA binding domain BF35_4123 PF00874 PRD domain BF35_4124 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF35_4124 PF00367 phosphotransferase system, EIIB BF35_4124 PF02378 Phosphotransferase system, EIIC BF35_4125 PF00381 PTS HPr component phosphorylation site BF35_4126 PF05524 PEP-utilising enzyme, N-terminal BF35_4126 PF00391 PEP-utilising enzyme, mobile domain BF35_4126 PF02896 PEP-utilising enzyme, TIM barrel domain BF35_4129 PF00881 Nitroreductase family BF35_413 PF00216 Bacterial DNA-binding protein BF35_4130 PF00990 Diguanylate cyclase, GGDEF domain BF35_4131 PF00144 Beta-lactamase BF35_4132 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF35_4132 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF35_4135 PF03079 ARD/ARD' family BF35_4136 PF00596 Class II Aldolase and Adducin N-terminal domain BF35_4138 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BF35_4138 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BF35_4139 PF00155 Aminotransferase class I and II BF35_4140 PF00795 Carbon-nitrogen hydrolase BF35_4141 PF01636 Phosphotransferase enzyme family BF35_4145 PF03551 Transcriptional regulator PadR-like family BF35_4151 PF00293 NUDIX domain BF35_4152 PF02803 Thiolase, C-terminal domain BF35_4152 PF00108 Thiolase, N-terminal domain BF35_4153 PF02463 RecF/RecN/SMC N terminal domain BF35_416 PF07690 Major Facilitator Superfamily BF35_4160 PF03459 TOBE domain BF35_4160 PF17912 MalK OB fold domain BF35_4160 PF00005 ABC transporter BF35_4161 PF16657 Maltogenic Amylase, C-terminal domain BF35_4161 PF00128 Alpha amylase, catalytic domain BF35_4162 PF16657 Maltogenic Amylase, C-terminal domain BF35_4162 PF00128 Alpha amylase, catalytic domain BF35_4162 PF02903 Alpha amylase, N-terminal ig-like domain BF35_4163 PF13416 Bacterial extracellular solute-binding protein BF35_4164 PF00528 Binding-protein-dependent transport system inner membrane component BF35_4165 PF00528 Binding-protein-dependent transport system inner membrane component BF35_4166 PF00356 Bacterial regulatory proteins, lacI family BF35_4166 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF35_4167 PF00155 Aminotransferase class I and II BF35_4169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_4169 PF00512 His Kinase A (phospho-acceptor) domain BF35_417 PF03621 MbtH-like protein BF35_4171 PF14040 Deoxyribonuclease NucA/NucB BF35_4173 PF08267 Cobalamin-independent synthase, N-terminal domain BF35_4173 PF01717 Cobalamin-independent synthase, Catalytic domain BF35_4175 PF07690 Major Facilitator Superfamily BF35_418 PF13193 AMP-binding enzyme C-terminal domain BF35_418 PF00501 AMP-binding enzyme BF35_418 PF00668 Condensation domain BF35_418 PF00550 Phosphopantetheine attachment site BF35_418 PF00975 Thioesterase domain BF35_4180 PF14177 YkyB-like protein BF35_4181 PF02541 Ppx/GppA phosphatase family BF35_4182 PF13090 Polyphosphate kinase C-terminal domain 2 BF35_4182 PF02503 Polyphosphate kinase middle domain BF35_4182 PF13089 Polyphosphate kinase N-terminal domain BF35_4182 PF17941 Polyphosphate kinase C-terminal domain 1 BF35_4184 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF35_4184 PF00149 Calcineurin-like phosphoesterase BF35_4186 PF00563 EAL domain BF35_4186 PF10388 EAL-domain associated signalling protein domain BF35_4187 PF10388 EAL-domain associated signalling protein domain BF35_4187 PF00563 EAL domain BF35_419 PF00550 Phosphopantetheine attachment site BF35_419 PF00857 Isochorismatase family BF35_4190 PF08796 Protein of unknown function (DUF1797) BF35_4192 PF04308 Ribonuclease H-like BF35_4195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_4195 PF03466 LysR substrate binding domain BF35_4196 PF00132 Bacterial transferase hexapeptide (six repeats) BF35_4196 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BF35_4196 PF14602 Hexapeptide repeat of succinyl-transferase BF35_4197 PF01546 Peptidase family M20/M25/M40 BF35_4197 PF07687 Peptidase dimerisation domain BF35_4199 PF02080 TrkA-C domain BF35_4199 PF02254 TrkA-N domain BF35_420 PF00501 AMP-binding enzyme BF35_420 PF13193 AMP-binding enzyme C-terminal domain BF35_4200 PF00753 Metallo-beta-lactamase superfamily BF35_4200 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF35_4200 PF17770 Ribonuclease J C-terminal domain BF35_4203 PF01327 Polypeptide deformylase BF35_4205 PF00676 Dehydrogenase E1 component BF35_4206 PF02780 Transketolase, C-terminal domain BF35_4206 PF02779 Transketolase, pyrimidine binding domain BF35_4207 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF35_4207 PF02817 e3 binding domain BF35_4207 PF00364 Biotin-requiring enzyme BF35_4208 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_4208 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF35_421 PF00425 chorismate binding enzyme BF35_4216 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF35_4216 PF01276 Orn/Lys/Arg decarboxylase, major domain BF35_4217 PF05256 Uncharacterised protein family (UPF0223) BF35_4218 PF06335 Protein of unknown function (DUF1054) BF35_422 PF00106 short chain dehydrogenase BF35_4220 PF00459 Inositol monophosphatase family BF35_4223 PF14036 YlaH-like protein BF35_4225 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BF35_4227 PF13638 PIN domain BF35_4227 PF02562 PhoH-like protein BF35_4229 PF07408 Protein of unknown function (DUF1507) BF35_423 PF07690 Major Facilitator Superfamily BF35_4230 PF01098 Cell cycle protein BF35_4231 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF35_4231 PF00682 HMGL-like BF35_4231 PF02436 Conserved carboxylase domain BF35_4231 PF02785 Biotin carboxylase C-terminal domain BF35_4231 PF00364 Biotin-requiring enzyme BF35_4231 PF00289 Biotin carboxylase, N-terminal domain BF35_4232 PF02628 Cytochrome oxidase assembly protein BF35_4233 PF01040 UbiA prenyltransferase family BF35_4234 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF35_4234 PF00034 Cytochrome c BF35_4234 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BF35_4235 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF35_4236 PF00510 Cytochrome c oxidase subunit III BF35_4237 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BF35_4238 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BF35_4239 PF08868 YugN-like family BF35_4240 PF14504 CAP-associated N-terminal BF35_4240 PF00188 Cysteine-rich secretory protein family BF35_4241 PF14071 Putative coat protein BF35_4242 PF14003 YlbE-like protein BF35_4243 PF00300 Histidine phosphatase superfamily (branch 1) BF35_4244 PF06133 Control of competence regulator ComK, YlbF/YmcA BF35_4245 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BF35_4248 PF07670 Nucleoside recognition BF35_4249 PF01467 Cytidylyltransferase-like BF35_425 PF01022 Bacterial regulatory protein, arsR family BF35_4250 PF01734 Patatin-like phospholipase BF35_4251 PF13180 PDZ domain BF35_4251 PF05362 Lon protease (S16) C-terminal proteolytic domain BF35_4252 PF05636 HIGH Nucleotidyl Transferase BF35_4253 PF02620 Large ribosomal RNA subunit accumulation protein YceD BF35_4254 PF01783 Ribosomal L32p protein family BF35_4256 PF00583 Acetyltransferase (GNAT) family BF35_4257 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF35_4257 PF02558 Ketopantoate reductase PanE/ApbA BF35_4258 PF10079 Bacillithiol biosynthesis BshC BF35_4259 PF01795 MraW methylase family BF35_4260 PF04977 Septum formation initiator BF35_4262 PF03793 PASTA domain BF35_4262 PF03717 Penicillin-binding Protein dimerisation domain BF35_4262 PF00905 Penicillin binding protein transpeptidase domain BF35_4263 PF00905 Penicillin binding protein transpeptidase domain BF35_4263 PF03717 Penicillin-binding Protein dimerisation domain BF35_4263 PF03793 PASTA domain BF35_4264 PF08245 Mur ligase middle domain BF35_4264 PF01225 Mur ligase family, catalytic domain BF35_4264 PF02875 Mur ligase family, glutamate ligase domain BF35_4265 PF00953 Glycosyl transferase family 4 BF35_4265 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BF35_4266 PF02875 Mur ligase family, glutamate ligase domain BF35_4266 PF08245 Mur ligase middle domain BF35_4267 PF01098 Cell cycle protein BF35_4268 PF04101 Glycosyltransferase family 28 C-terminal domain BF35_4268 PF03033 Glycosyltransferase family 28 N-terminal domain BF35_4269 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF35_4269 PF01565 FAD binding domain BF35_427 PF13476 AAA domain BF35_4270 PF08478 POTRA domain, FtsQ-type BF35_4270 PF03799 Cell division protein FtsQ BF35_4271 PF02491 SHS2 domain inserted in FTSA BF35_4272 PF00091 Tubulin/FtsZ family, GTPase domain BF35_4272 PF12327 FtsZ family, C-terminal domain BF35_4273 PF03419 Sporulation factor SpoIIGA BF35_4274 PF04542 Sigma-70 region 2 BF35_4274 PF04545 Sigma-70, region 4 BF35_4275 PF04545 Sigma-70, region 4 BF35_4275 PF04539 Sigma-70 region 3 BF35_4275 PF04542 Sigma-70 region 2 BF35_4276 PF05239 PRC-barrel domain BF35_4278 PF01168 Alanine racemase, N-terminal domain BF35_4279 PF04472 Cell division protein SepF BF35_428 PF00149 Calcineurin-like phosphoesterase BF35_428 PF12320 Type 5 capsule protein repressor C-terminal domain BF35_4280 PF02325 YGGT family BF35_4281 PF01479 S4 domain BF35_4281 PF17774 Putative RNA-binding domain in YlmH BF35_4282 PF05103 DivIVA protein BF35_4283 PF08264 Anticodon-binding domain of tRNA BF35_4283 PF00133 tRNA synthetases class I (I, L, M and V) BF35_4283 PF06827 Zinc finger found in FPG and IleRS BF35_4285 PF01252 Signal peptidase (SPase) II BF35_4286 PF01479 S4 domain BF35_4286 PF00849 RNA pseudouridylate synthase BF35_4287 PF00156 Phosphoribosyl transferase domain BF35_4288 PF00860 Permease family BF35_4289 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF35_4289 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF35_429 PF10763 Protein of unknown function (DUF2584) BF35_4290 PF01979 Amidohydrolase family BF35_4291 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF35_4291 PF00117 Glutamine amidotransferase class-I BF35_4292 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF35_4292 PF02142 MGS-like domain BF35_4292 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF35_4293 PF00175 Oxidoreductase NAD-binding domain BF35_4293 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF35_4294 PF01180 Dihydroorotate dehydrogenase BF35_4295 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF35_4296 PF00156 Phosphoribosyl transferase domain BF35_43 PF12706 Beta-lactamase superfamily domain BF35_4303 PF01321 Creatinase/Prolidase N-terminal domain BF35_4303 PF00557 Metallopeptidase family M24 BF35_4306 PF00689 Cation transporting ATPase, C-terminus BF35_4306 PF00690 Cation transporter/ATPase, N-terminus BF35_4307 PF03755 YicC-like family, N-terminal region BF35_4307 PF08340 Domain of unknown function (DUF1732) BF35_4308 PF04025 Domain of unknown function (DUF370) BF35_4309 PF00625 Guanylate kinase BF35_431 PF00378 Enoyl-CoA hydratase/isomerase BF35_4310 PF01192 RNA polymerase Rpb6 BF35_4311 PF04127 DNA / pantothenate metabolism flavoprotein BF35_4311 PF02441 Flavoprotein BF35_4312 PF04851 Type III restriction enzyme, res subunit BF35_4312 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BF35_4312 PF18074 Primosomal protein N C-terminal domain BF35_4312 PF17764 3′ DNA-binding domain (3′BD) BF35_4312 PF00271 Helicase conserved C-terminal domain BF35_4313 PF01327 Polypeptide deformylase BF35_4314 PF00551 Formyl transferase BF35_4314 PF02911 Formyl transferase, C-terminal domain BF35_4315 PF01189 16S rRNA methyltransferase RsmB/F BF35_4315 PF01029 NusB family BF35_4316 PF04055 Radical SAM superfamily BF35_4318 PF00069 Protein kinase domain BF35_4318 PF03793 PASTA domain BF35_4319 PF16745 RsgA N-terminal domain BF35_4319 PF03193 RsgA GTPase BF35_432 PF01810 LysE type translocator BF35_4320 PF00834 Ribulose-phosphate 3 epimerase family BF35_4321 PF04263 Thiamin pyrophosphokinase, catalytic domain BF35_4321 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BF35_4322 PF00830 Ribosomal L28 family BF35_4323 PF03780 Asp23 family, cell envelope-related function BF35_4324 PF13684 Dihydroxyacetone kinase family BF35_4324 PF02734 DAK2 domain BF35_4325 PF00270 DEAD/DEAH box helicase BF35_4325 PF00271 Helicase conserved C-terminal domain BF35_4325 PF17191 RecG wedge domain BF35_4326 PF03061 Thioesterase superfamily BF35_4327 PF02504 Fatty acid synthesis protein BF35_4328 PF00698 Acyl transferase domain BF35_433 PF00171 Aldehyde dehydrogenase family BF35_4330 PF00550 Phosphopantetheine attachment site BF35_4331 PF14622 Ribonuclease-III-like BF35_4331 PF00035 Double-stranded RNA binding motif BF35_4332 PF06470 SMC proteins Flexible Hinge Domain BF35_4332 PF02463 RecF/RecN/SMC N terminal domain BF35_4333 PF02881 SRP54-type protein, helical bundle domain BF35_4333 PF00448 SRP54-type protein, GTPase domain BF35_4334 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BF35_4335 PF00448 SRP54-type protein, GTPase domain BF35_4335 PF02881 SRP54-type protein, helical bundle domain BF35_4335 PF02978 Signal peptide binding domain BF35_4336 PF00886 Ribosomal protein S16 BF35_4338 PF05239 PRC-barrel domain BF35_4338 PF01782 RimM N-terminal domain BF35_4339 PF01746 tRNA (Guanine-1)-methyltransferase BF35_434 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF35_434 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF35_4340 PF01245 Ribosomal protein L19 BF35_4341 PF10502 Signal peptidase, peptidase S26 BF35_4342 PF01926 50S ribosome-binding GTPase BF35_4343 PF01351 Ribonuclease HII BF35_4344 PF00549 CoA-ligase BF35_4344 PF08442 ATP-grasp domain BF35_4345 PF02629 CoA binding domain BF35_4345 PF00549 CoA-ligase BF35_4346 PF02481 DNA recombination-mediator protein A BF35_4347 PF01751 Toprim domain BF35_4347 PF01131 DNA topoisomerase BF35_4347 PF01396 Topoisomerase DNA binding C4 zinc finger BF35_4348 PF01134 Glucose inhibited division protein A BF35_4349 PF02899 Phage integrase, N-terminal SAM-like domain BF35_4349 PF00589 Phage integrase family BF35_435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF35_435 PF02770 Acyl-CoA dehydrogenase, middle domain BF35_435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF35_4350 PF00227 Proteasome subunit BF35_4351 PF00004 ATPase family associated with various cellular activities (AAA) BF35_4351 PF10431 C-terminal, D2-small domain, of ClpB protein BF35_4351 PF07724 AAA domain (Cdc48 subfamily) BF35_4352 PF06018 CodY GAF-like domain BF35_4352 PF08222 CodY helix-turn-helix domain BF35_4353 PF00318 Ribosomal protein S2 BF35_4354 PF00889 Elongation factor TS BF35_4355 PF00696 Amino acid kinase family BF35_4356 PF01765 Ribosome recycling factor BF35_4357 PF01255 Putative undecaprenyl diphosphate synthase BF35_4359 PF13288 DXP reductoisomerase C-terminal domain BF35_4359 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF35_4359 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF35_4360 PF02163 Peptidase family M50 BF35_4360 PF17820 PDZ domain BF35_4361 PF04073 Aminoacyl-tRNA editing domain BF35_4361 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF35_4361 PF03129 Anticodon binding domain BF35_4362 PF14579 Helix-hairpin-helix motif BF35_4362 PF02811 PHP domain BF35_4362 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF35_4362 PF11490 DNA polymerase III polC-type N-terminus II BF35_4362 PF14480 DNA polymerase III polC-type N-terminus I BF35_4362 PF00929 Exonuclease BF35_4362 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF35_4363 PF02576 RimP N-terminal domain BF35_4363 PF17384 RimP C-terminal SH3 domain BF35_4364 PF13184 NusA-like KH domain BF35_4364 PF08529 NusA N-terminal domain BF35_4364 PF00575 S1 RNA binding domain BF35_4365 PF04296 Protein of unknown function (DUF448) BF35_4366 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF35_4367 PF00009 Elongation factor Tu GTP binding domain BF35_4367 PF11987 Translation-initiation factor 2 BF35_4367 PF04760 Translation initiation factor IF-2, N-terminal region BF35_4368 PF04456 Protein of unknown function (DUF503) BF35_4369 PF02033 Ribosome-binding factor A BF35_437 PF03972 MmgE/PrpD family BF35_4370 PF16198 tRNA pseudouridylate synthase B C-terminal domain BF35_4370 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF35_4371 PF06574 FAD synthetase BF35_4371 PF01687 Riboflavin kinase BF35_4372 PF00312 Ribosomal protein S15 BF35_4373 PF03725 3' exoribonuclease family, domain 2 BF35_4373 PF01138 3' exoribonuclease family, domain 1 BF35_4373 PF00575 S1 RNA binding domain BF35_4373 PF00013 KH domain BF35_4373 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF35_4374 PF01522 Polysaccharide deacetylase BF35_4375 PF00675 Insulinase (Peptidase family M16) BF35_4375 PF05193 Peptidase M16 inactive domain BF35_4376 PF05239 PRC-barrel domain BF35_4377 PF16924 Dipicolinate synthase subunit A N-terminal domain BF35_4377 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF35_4378 PF02441 Flavoprotein BF35_4379 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF35_4379 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF35_438 PF00285 Citrate synthase, C-terminal domain BF35_4380 PF13840 ACT domain BF35_4380 PF00696 Amino acid kinase family BF35_4381 PF00701 Dihydrodipicolinate synthetase family BF35_4382 PF17770 Ribonuclease J C-terminal domain BF35_4382 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF35_4382 PF00753 Metallo-beta-lactamase superfamily BF35_4383 PF00574 Clp protease BF35_4384 PF14035 YlzJ-like protein BF35_4385 PF09397 Ftsk gamma domain BF35_4385 PF17854 FtsK alpha domain BF35_4385 PF01580 FtsK/SpoIIIE family BF35_4387 PF07702 UTRA domain BF35_4387 PF00392 Bacterial regulatory proteins, gntR family BF35_439 PF07690 Major Facilitator Superfamily BF35_4392 PF05193 Peptidase M16 inactive domain BF35_4393 PF00675 Insulinase (Peptidase family M16) BF35_4393 PF05193 Peptidase M16 inactive domain BF35_4395 PF11588 Protein of unknown function (DUF3243) BF35_4396 PF11868 Protein of unknown function (DUF3388) BF35_4397 PF13464 Domain of unknown function (DUF4115) BF35_4398 PF01066 CDP-alcohol phosphatidyltransferase BF35_4399 PF00994 Probable molybdopterin binding domain BF35_4399 PF02464 Competence-damaged protein BF35_4399 PF18146 Damage-inducible protein CinA KH domain BF35_4400 PF00154 recA bacterial DNA recombination protein BF35_4401 PF01966 HD domain BF35_4401 PF00013 KH domain BF35_4401 PF12072 Domain of unknown function (DUF3552) BF35_4402 PF13277 YmdB-like protein BF35_4403 PF04232 Stage V sporulation protein S (SpoVS) BF35_4404 PF01244 Membrane dipeptidase (Peptidase family M19) BF35_4405 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BF35_4405 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF35_4405 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF35_4406 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_4407 PF04055 Radical SAM superfamily BF35_4407 PF01938 TRAM domain BF35_4407 PF00919 Uncharacterized protein family UPF0004 BF35_4408 PF06133 Control of competence regulator ComK, YlbF/YmcA BF35_4409 PF10628 Outer spore coat protein E (CotE) BF35_441 PF00912 Transglycosylase BF35_441 PF00905 Penicillin binding protein transpeptidase domain BF35_4410 PF05190 MutS family domain IV BF35_4410 PF01624 MutS domain I BF35_4410 PF05192 MutS domain III BF35_4410 PF00488 MutS domain V BF35_4410 PF05188 MutS domain II BF35_4411 PF01119 DNA mismatch repair protein, C-terminal domain BF35_4411 PF08676 MutL C terminal dimerisation domain BF35_4412 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BF35_4414 PF00350 Dynamin family BF35_4415 PF00884 Sulfatase BF35_4417 PF07486 Cell Wall Hydrolase BF35_4418 PF00082 Subtilase family BF35_4419 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BF35_4421 PF00392 Bacterial regulatory proteins, gntR family BF35_4421 PF00155 Aminotransferase class I and II BF35_4422 PF03788 LrgA family BF35_4423 PF04172 LrgB-like family BF35_4424 PF10787 Uncharacterised protein from bacillus cereus group BF35_4425 PF02567 Phenazine biosynthesis-like protein BF35_4427 PF02719 Polysaccharide biosynthesis protein BF35_4427 PF08485 Polysaccharide biosynthesis protein C-terminal BF35_4428 PF16363 GDP-mannose 4,6 dehydratase BF35_4430 PF04101 Glycosyltransferase family 28 C-terminal domain BF35_4430 PF03033 Glycosyltransferase family 28 N-terminal domain BF35_4431 PF00990 Diguanylate cyclase, GGDEF domain BF35_4431 PF00563 EAL domain BF35_4431 PF03707 Bacterial signalling protein N terminal repeat BF35_4436 PF07687 Peptidase dimerisation domain BF35_4436 PF01546 Peptidase family M20/M25/M40 BF35_4437 PF00730 HhH-GPD superfamily base excision DNA repair protein BF35_4437 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BF35_4438 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF35_4438 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF35_4439 PF12833 Helix-turn-helix domain BF35_4439 PF02805 Metal binding domain of Ada BF35_4440 PF03372 Endonuclease/Exonuclease/phosphatase family BF35_4441 PF01497 Periplasmic binding protein BF35_4442 PF01032 FecCD transport family BF35_4443 PF01032 FecCD transport family BF35_4444 PF00005 ABC transporter BF35_4445 PF00756 Putative esterase BF35_4447 PF02583 Metal-sensitive transcriptional repressor BF35_4448 PF00403 Heavy-metal-associated domain BF35_4449 PF00403 Heavy-metal-associated domain BF35_4451 PF00216 Bacterial DNA-binding protein BF35_4452 PF01226 Formate/nitrite transporter BF35_4453 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF35_4453 PF00149 Calcineurin-like phosphoesterase BF35_4454 PF00704 Glycosyl hydrolases family 18 BF35_4454 PF00041 Fibronectin type III domain BF35_4455 PF00324 Amino acid permease BF35_4458 PF04238 Protein of unknown function (DUF420) BF35_4459 PF00465 Iron-containing alcohol dehydrogenase BF35_4460 PF00455 DeoR C terminal sensor domain BF35_4460 PF08220 DeoR-like helix-turn-helix domain BF35_4461 PF00294 pfkB family carbohydrate kinase BF35_4462 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF35_4462 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF35_4463 PF01476 LysM domain BF35_4463 PF06725 3D domain BF35_4466 PF17209 Hfq protein BF35_4469 PF00004 ATPase family associated with various cellular activities (AAA) BF35_4469 PF17866 AAA lid domain BF35_4471 PF03458 UPF0126 domain BF35_4472 PF16360 GTP-binding GTPase Middle Region BF35_4472 PF01926 50S ribosome-binding GTPase BF35_4472 PF13167 GTP-binding GTPase N-terminal BF35_4473 PF06838 Methionine gamma-lyase BF35_4474 PF13411 MerR HTH family regulatory protein BF35_4475 PF03951 Glutamine synthetase, beta-Grasp domain BF35_4475 PF00120 Glutamine synthetase, catalytic domain BF35_448 PF10676 Spore germination protein gerPA/gerPF BF35_4481 PF03551 Transcriptional regulator PadR-like family BF35_4484 PF01726 LexA DNA binding domain BF35_4484 PF00717 Peptidase S24-like BF35_4485 PF00239 Resolvase, N terminal domain BF35_4486 PF05979 Bacterial protein of unknown function (DUF896) BF35_4487 PF00149 Calcineurin-like phosphoesterase BF35_4487 PF02872 5'-nucleotidase, C-terminal domain BF35_4488 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF35_4489 PF00005 ABC transporter BF35_4490 PF00528 Binding-protein-dependent transport system inner membrane component BF35_4491 PF00528 Binding-protein-dependent transport system inner membrane component BF35_4492 PF02780 Transketolase, C-terminal domain BF35_4492 PF02779 Transketolase, pyrimidine binding domain BF35_4492 PF00456 Transketolase, thiamine diphosphate binding domain BF35_4493 PF10747 Sporulation inhibitor of replication protein SirA BF35_4494 PF03672 Uncharacterised protein family (UPF0154) BF35_4495 PF00005 ABC transporter BF35_4495 PF00664 ABC transporter transmembrane region BF35_4496 PF00664 ABC transporter transmembrane region BF35_4496 PF00005 ABC transporter BF35_4499 PF01471 Putative peptidoglycan binding domain BF35_4499 PF01510 N-acetylmuramoyl-L-alanine amidase BF35_45 PF00293 NUDIX domain BF35_4501 PF01925 Sulfite exporter TauE/SafE BF35_4503 PF13344 Haloacid dehalogenase-like hydrolase BF35_4503 PF00293 NUDIX domain BF35_4504 PF04172 LrgB-like family BF35_4505 PF03788 LrgA family BF35_4506 PF03466 LysR substrate binding domain BF35_4506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_4508 PF00005 ABC transporter BF35_4512 PF02683 Cytochrome C biogenesis protein transmembrane region BF35_4513 PF07301 Protein of unknown function (DUF1453) BF35_4516 PF11084 Protein of unknown function (DUF2621) BF35_4520 PF08241 Methyltransferase domain BF35_4521 PF09021 HutP BF35_4522 PF00221 Aromatic amino acid lyase BF35_4523 PF01175 Urocanase Rossmann-like domain BF35_4523 PF17391 Urocanase N-terminal domain BF35_4523 PF17392 Urocanase C-terminal domain BF35_4524 PF01979 Amidohydrolase family BF35_4525 PF00491 Arginase family BF35_4526 PF02559 CarD-like/TRCF domain BF35_4527 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF35_4528 PF01645 Conserved region in glutamate synthase BF35_4530 PF00474 Sodium:solute symporter family BF35_4531 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_4532 PF01738 Dienelactone hydrolase family BF35_4533 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_4533 PF00512 His Kinase A (phospho-acceptor) domain BF35_4533 PF00989 PAS fold BF35_4533 PF13426 PAS domain BF35_4533 PF13188 PAS domain BF35_4535 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_4535 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_4541 PF05532 CsbD-like BF35_4545 PF01381 Helix-turn-helix BF35_4546 PF00005 ABC transporter BF35_4548 PF00501 AMP-binding enzyme BF35_4548 PF13193 AMP-binding enzyme C-terminal domain BF35_4549 PF02632 BioY family BF35_4550 PF00501 AMP-binding enzyme BF35_4550 PF13193 AMP-binding enzyme C-terminal domain BF35_4551 PF02803 Thiolase, C-terminal domain BF35_4551 PF00108 Thiolase, N-terminal domain BF35_4553 PF13344 Haloacid dehalogenase-like hydrolase BF35_4553 PF00293 NUDIX domain BF35_4554 PF01411 tRNA synthetases class II (A) BF35_4554 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF35_4554 PF02272 DHHA1 domain BF35_4556 PF07690 Major Facilitator Superfamily BF35_4558 PF08179 Small acid-soluble spore protein P family BF35_4560 PF01522 Polysaccharide deacetylase BF35_4562 PF00330 Aconitase family (aconitate hydratase) BF35_4562 PF00694 Aconitase C-terminal domain BF35_4563 PF03412 Peptidase C39 family BF35_4563 PF00005 ABC transporter BF35_4563 PF00664 ABC transporter transmembrane region BF35_4565 PF00578 AhpC/TSA family BF35_4566 PF11490 DNA polymerase III polC-type N-terminus II BF35_4566 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF35_4566 PF00929 Exonuclease BF35_4566 PF02811 PHP domain BF35_4566 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF35_4566 PF14579 Helix-hairpin-helix motif BF35_4566 PF01336 OB-fold nucleic acid binding domain BF35_4567 PF13040 Fur-regulated basic protein B BF35_4568 PF08177 Small acid-soluble spore protein N family BF35_4570 PF01476 LysM domain BF35_4570 PF00704 Glycosyl hydrolases family 18 BF35_4571 PF12323 Helix-turn-helix domain BF35_4571 PF01385 Probable transposase BF35_4571 PF07282 Putative transposase DNA-binding domain BF35_4572 PF03061 Thioesterase superfamily BF35_4573 PF01521 Iron-sulphur cluster biosynthesis BF35_4574 PF02660 Glycerol-3-phosphate acyltransferase BF35_4575 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF35_4575 PF03477 ATP cone domain BF35_4577 PF00072 Response regulator receiver domain BF35_4577 PF00486 Transcriptional regulatory protein, C terminal BF35_4578 PF13180 PDZ domain BF35_4579 PF13380 CoA binding domain BF35_4580 PF00204 DNA gyrase B BF35_4580 PF00986 DNA gyrase B subunit, carboxyl terminus BF35_4580 PF01751 Toprim domain BF35_4580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_4581 PF03989 DNA gyrase C-terminal domain, beta-propeller BF35_4581 PF00521 DNA gyrase/topoisomerase IV, subunit A BF35_4582 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF35_4582 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF35_4586 PF00005 ABC transporter BF35_4586 PF13732 Domain of unknown function (DUF4162) BF35_4589 PF08281 Sigma-70, region 4 BF35_4589 PF04542 Sigma-70 region 2 BF35_459 PF04542 Sigma-70 region 2 BF35_459 PF08281 Sigma-70, region 4 BF35_4591 PF03816 Cell envelope-related transcriptional attenuator domain BF35_4592 PF00375 Sodium:dicarboxylate symporter family BF35_4593 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_4594 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_4595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_4596 PF08241 Methyltransferase domain BF35_46 PF02768 DNA polymerase III beta subunit, C-terminal domain BF35_46 PF00712 DNA polymerase III beta subunit, N-terminal domain BF35_46 PF02767 DNA polymerase III beta subunit, central domain BF35_4604 PF13520 Amino acid permease BF35_4607 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_4608 PF01568 Molydopterin dinucleotide binding domain BF35_4608 PF00384 Molybdopterin oxidoreductase BF35_4608 PF00037 4Fe-4S binding domain BF35_4608 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF35_4608 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF35_4609 PF07849 Protein of unknown function (DUF1641) BF35_4610 PF10057 Uncharacterized conserved protein (DUF2294) BF35_4611 PF02634 FdhD/NarQ family BF35_4612 PF06463 Molybdenum Cofactor Synthesis C BF35_4612 PF04055 Radical SAM superfamily BF35_4613 PF01226 Formate/nitrite transporter BF35_4614 PF00899 ThiF family BF35_4615 PF03453 MoeA N-terminal region (domain I and II) BF35_4615 PF00994 Probable molybdopterin binding domain BF35_4615 PF03454 MoeA C-terminal region (domain IV) BF35_4616 PF02391 MoaE protein BF35_4618 PF10609 NUBPL iron-transfer P-loop NTPase BF35_4621 PF06961 Protein of unknown function (DUF1294) BF35_4622 PF00892 EamA-like transporter family BF35_4623 PF02681 Divergent PAP2 family BF35_4624 PF13243 Squalene-hopene cyclase C-terminal domain BF35_4624 PF13249 Squalene-hopene cyclase N-terminal domain BF35_4625 PF14151 YfhD-like protein BF35_4627 PF00171 Aldehyde dehydrogenase family BF35_4629 PF00474 Sodium:solute symporter family BF35_4630 PF01156 Inosine-uridine preferring nucleoside hydrolase BF35_4632 PF00206 Lyase BF35_4632 PF14698 Argininosuccinate lyase C-terminal BF35_4634 PF00106 short chain dehydrogenase BF35_4637 PF00293 NUDIX domain BF35_4639 PF00258 Flavodoxin BF35_4641 PF00313 'Cold-shock' DNA-binding domain BF35_4645 PF13037 Domain of unknown function (DUF3898) BF35_4645 PF13039 Protein of unknown function (DUF3900) BF35_4650 PF13333 Integrase core domain BF35_4650 PF00665 Integrase core domain BF35_4650 PF13276 HTH-like domain BF35_4651 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_4654 PF02308 MgtC family BF35_4655 PF01752 Collagenase BF35_4655 PF08453 Peptidase family M9 N-terminal BF35_4655 PF18496 Collagenase G catalytic helper subdomain BF35_4656 PF00512 His Kinase A (phospho-acceptor) domain BF35_4656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_4656 PF00989 PAS fold BF35_4659 PF01022 Bacterial regulatory protein, arsR family BF35_4660 PF01520 N-acetylmuramoyl-L-alanine amidase BF35_4660 PF00395 S-layer homology domain BF35_4661 PF07968 Leukocidin/Hemolysin toxin family BF35_4662 PF00440 Bacterial regulatory proteins, tetR family BF35_4665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF35_4668 PF00144 Beta-lactamase BF35_4669 PF02913 FAD linked oxidases, C-terminal domain BF35_4669 PF01565 FAD binding domain BF35_4670 PF01758 Sodium Bile acid symporter family BF35_4672 PF18801 response regulator aspartate phosphatase H, N terminal BF35_4674 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BF35_4675 PF08240 Alcohol dehydrogenase GroES-like domain BF35_4675 PF00107 Zinc-binding dehydrogenase BF35_4676 PF01022 Bacterial regulatory protein, arsR family BF35_4677 PF01494 FAD binding domain BF35_4678 PF03009 Glycerophosphoryl diester phosphodiesterase family BF35_4681 PF03466 LysR substrate binding domain BF35_4681 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_4682 PF07690 Major Facilitator Superfamily BF35_4684 PF00144 Beta-lactamase BF35_4685 PF04371 Porphyromonas-type peptidyl-arginine deiminase BF35_4689 PF04371 Porphyromonas-type peptidyl-arginine deiminase BF35_4690 PF08439 Oligopeptidase F BF35_4690 PF01432 Peptidase family M3 BF35_4691 PF00797 N-acetyltransferase BF35_4692 PF00128 Alpha amylase, catalytic domain BF35_4692 PF09154 Domain of unknown function (DUF1939) BF35_4694 PF01713 Smr domain BF35_4694 PF00488 MutS domain V BF35_4697 PF17827 PrmC N-terminal domain BF35_4697 PF05175 Methyltransferase small domain BF35_4698 PF00107 Zinc-binding dehydrogenase BF35_4698 PF08240 Alcohol dehydrogenase GroES-like domain BF35_4699 PF03466 LysR substrate binding domain BF35_4699 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_47 PF00293 NUDIX domain BF35_47 PF09297 NADH pyrophosphatase zinc ribbon domain BF35_4701 PF10901 Protein of unknown function (DUF2690) BF35_4702 PF13302 Acetyltransferase (GNAT) domain BF35_4706 PF05675 Protein of unknown function (DUF817) BF35_4707 PF01032 FecCD transport family BF35_4708 PF01032 FecCD transport family BF35_4709 PF01497 Periplasmic binding protein BF35_471 PF00085 Thioredoxin BF35_4712 PF03600 Citrate transporter BF35_4713 PF08830 Protein of unknown function (DUF1806) BF35_4714 PF02585 GlcNAc-PI de-N-acetylase BF35_472 PF01569 PAP2 superfamily BF35_4720 PF07690 Major Facilitator Superfamily BF35_4721 PF00324 Amino acid permease BF35_4722 PF08240 Alcohol dehydrogenase GroES-like domain BF35_4722 PF00107 Zinc-binding dehydrogenase BF35_4723 PF03551 Transcriptional regulator PadR-like family BF35_4726 PF00753 Metallo-beta-lactamase superfamily BF35_473 PF16916 Dimerisation domain of Zinc Transporter BF35_473 PF01545 Cation efflux family BF35_4734 PF00144 Beta-lactamase BF35_4739 PF01471 Putative peptidoglycan binding domain BF35_4739 PF01183 Glycosyl hydrolases family 25 BF35_474 PF07070 SpoOM protein BF35_4740 PF00753 Metallo-beta-lactamase superfamily BF35_4742 PF03063 Prismane/CO dehydrogenase family BF35_4746 PF13732 Domain of unknown function (DUF4162) BF35_4746 PF00005 ABC transporter BF35_4747 PF01061 ABC-2 type transporter BF35_4748 PF05656 Protein of unknown function (DUF805) BF35_475 PF08239 Bacterial SH3 domain BF35_475 PF00069 Protein kinase domain BF35_4752 PF01810 LysE type translocator BF35_4753 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BF35_4753 PF00535 Glycosyl transferase family 2 BF35_4754 PF04542 Sigma-70 region 2 BF35_4755 PF12791 Anti-sigma factor N-terminus BF35_4756 PF01522 Polysaccharide deacetylase BF35_4756 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF35_4757 PF01022 Bacterial regulatory protein, arsR family BF35_4760 PF01638 HxlR-like helix-turn-helix BF35_4761 PF02525 Flavodoxin-like fold BF35_4762 PF13193 AMP-binding enzyme C-terminal domain BF35_4762 PF00501 AMP-binding enzyme BF35_4763 PF13302 Acetyltransferase (GNAT) domain BF35_4768 PF02567 Phenazine biosynthesis-like protein BF35_477 PF14162 YozD-like protein BF35_4775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF35_4775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF35_4776 PF07702 UTRA domain BF35_4776 PF00392 Bacterial regulatory proteins, gntR family BF35_4777 PF03960 ArsC family BF35_4783 PF03928 Haem-degrading BF35_4785 PF08659 KR domain BF35_4785 PF02801 Beta-ketoacyl synthase, C-terminal domain BF35_4785 PF00550 Phosphopantetheine attachment site BF35_4785 PF14765 Polyketide synthase dehydratase BF35_4785 PF16197 Ketoacyl-synthetase C-terminal extension BF35_4785 PF00109 Beta-ketoacyl synthase, N-terminal domain BF35_4785 PF00698 Acyl transferase domain BF35_4785 PF08240 Alcohol dehydrogenase GroES-like domain BF35_4785 PF00107 Zinc-binding dehydrogenase BF35_4786 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF35_4786 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF35_4787 PF02780 Transketolase, C-terminal domain BF35_4787 PF02779 Transketolase, pyrimidine binding domain BF35_4787 PF00456 Transketolase, thiamine diphosphate binding domain BF35_4788 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF35_4788 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF35_4789 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF35_4790 PF02447 GntP family permease BF35_4791 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF35_4791 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF35_4792 PF10282 Lactonase, 7-bladed beta-propeller BF35_4793 PF06906 Protein of unknown function (DUF1272) BF35_4794 PF00805 Pentapeptide repeats (8 copies) BF35_4795 PF00892 EamA-like transporter family BF35_4796 PF01370 NAD dependent epimerase/dehydratase family BF35_4798 PF08421 Putative zinc binding domain BF35_4798 PF08484 C-methyltransferase C-terminal domain BF35_4799 PF16363 GDP-mannose 4,6 dehydratase BF35_480 PF06855 YozE SAM-like fold BF35_4800 PF00483 Nucleotidyl transferase BF35_4802 PF13411 MerR HTH family regulatory protein BF35_4803 PF03471 Transporter associated domain BF35_4803 PF00571 CBS domain BF35_4803 PF01595 Cyclin M transmembrane N-terminal domain BF35_4806 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_481 PF14122 YokU-like protein, putative antitoxin BF35_4810 PF07690 Major Facilitator Superfamily BF35_4812 PF08003 Protein of unknown function (DUF1698) BF35_4816 PF01594 AI-2E family transporter BF35_4817 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF35_4817 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF35_4817 PF13288 DXP reductoisomerase C-terminal domain BF35_4818 PF00579 tRNA synthetases class I (W and Y) BF35_482 PF12544 Lysine-2,3-aminomutase BF35_4820 PF00005 ABC transporter BF35_4820 PF12704 MacB-like periplasmic core domain BF35_4820 PF02687 FtsX-like permease family BF35_4822 PF14602 Hexapeptide repeat of succinyl-transferase BF35_4822 PF12464 Maltose acetyltransferase BF35_4823 PF00480 ROK family BF35_4824 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_4825 PF00293 NUDIX domain BF35_4825 PF13344 Haloacid dehalogenase-like hydrolase BF35_483 PF02954 Bacterial regulatory protein, Fis family BF35_483 PF00158 Sigma-54 interaction domain BF35_483 PF13426 PAS domain BF35_4832 PF13419 Haloacid dehalogenase-like hydrolase BF35_4837 PF00005 ABC transporter BF35_484 PF00583 Acetyltransferase (GNAT) family BF35_4841 PF02887 Pyruvate kinase, alpha/beta domain BF35_4841 PF00391 PEP-utilising enzyme, mobile domain BF35_4841 PF00224 Pyruvate kinase, barrel domain BF35_4843 PF00881 Nitroreductase family BF35_4844 PF01638 HxlR-like helix-turn-helix BF35_4847 PF13393 Histidyl-tRNA synthetase BF35_4847 PF03129 Anticodon binding domain BF35_4848 PF04073 Aminoacyl-tRNA editing domain BF35_485 PF07687 Peptidase dimerisation domain BF35_485 PF01546 Peptidase family M20/M25/M40 BF35_4850 PF01381 Helix-turn-helix BF35_4853 PF04231 Endonuclease I BF35_4854 PF03606 C4-dicarboxylate anaerobic carrier BF35_4855 PF03737 Aldolase/RraA BF35_4858 PF02361 Cobalt transport protein BF35_4859 PF00005 ABC transporter BF35_486 PF01144 Coenzyme A transferase BF35_4861 PF14256 YwiC-like protein BF35_4866 PF02667 Short chain fatty acid transporter BF35_4867 PF17440 Thiol-activated cytolysin beta sandwich domain BF35_4867 PF01289 Thiol-activated cytolysin BF35_487 PF01144 Coenzyme A transferase BF35_4870 PF07690 Major Facilitator Superfamily BF35_4871 PF01047 MarR family BF35_4872 PF12697 Alpha/beta hydrolase family BF35_4874 PF07690 Major Facilitator Superfamily BF35_4875 PF14044 NETI protein BF35_4876 PF09587 Bacterial capsule synthesis protein PGA_cap BF35_4877 PF02557 D-alanyl-D-alanine carboxypeptidase BF35_488 PF00202 Aminotransferase class-III BF35_4884 PF01471 Putative peptidoglycan binding domain BF35_4884 PF01476 LysM domain BF35_4884 PF01510 N-acetylmuramoyl-L-alanine amidase BF35_4886 PF01804 Penicillin amidase BF35_4887 PF01497 Periplasmic binding protein BF35_4887 PF12833 Helix-turn-helix domain BF35_4888 PF07883 Cupin domain BF35_489 PF09385 Histidine kinase N terminal BF35_4891 PF00266 Aminotransferase class-V BF35_4892 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF35_4892 PF01842 ACT domain BF35_4892 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF35_4895 PF13520 Amino acid permease BF35_4896 PF01037 Lrp/AsnC ligand binding domain BF35_4897 PF00857 Isochorismatase family BF35_4898 PF02769 AIR synthase related protein, C-terminal domain BF35_4898 PF00586 AIR synthase related protein, N-terminal domain BF35_4899 PF07503 HypF finger BF35_4899 PF01300 Telomere recombination BF35_4899 PF17788 HypF Kae1-like domain BF35_4899 PF00708 Acylphosphatase BF35_4900 PF00202 Aminotransferase class-III BF35_4901 PF01842 ACT domain BF35_4901 PF03315 Serine dehydratase beta chain BF35_4902 PF03313 Serine dehydratase alpha chain BF35_4904 PF13302 Acetyltransferase (GNAT) domain BF35_4906 PF02743 Cache domain BF35_4906 PF00672 HAMP domain BF35_4906 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_491 PF07997 Protein of unknown function (DUF1694) BF35_4915 PF18801 response regulator aspartate phosphatase H, N terminal BF35_4916 PF00356 Bacterial regulatory proteins, lacI family BF35_4917 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF35_4918 PF05116 Sucrose-6F-phosphate phosphohydrolase BF35_4919 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF35_4919 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF35_492 PF00171 Aldehyde dehydrogenase family BF35_4920 PF07690 Major Facilitator Superfamily BF35_4922 PF02016 LD-carboxypeptidase N-terminal domain BF35_4922 PF17676 LD-carboxypeptidase C-terminal domain BF35_4925 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_4925 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_4926 PF04299 Putative FMN-binding domain BF35_4927 PF00583 Acetyltransferase (GNAT) family BF35_4928 PF01047 MarR family BF35_493 PF03471 Transporter associated domain BF35_493 PF00571 CBS domain BF35_493 PF01595 Cyclin M transmembrane N-terminal domain BF35_4930 PF00072 Response regulator receiver domain BF35_4930 PF00486 Transcriptional regulatory protein, C terminal BF35_4931 PF00512 His Kinase A (phospho-acceptor) domain BF35_4931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_4931 PF00672 HAMP domain BF35_4934 PF02687 FtsX-like permease family BF35_4935 PF00005 ABC transporter BF35_4938 PF04072 Leucine carboxyl methyltransferase BF35_4943 PF01381 Helix-turn-helix BF35_4945 PF00144 Beta-lactamase BF35_4947 PF00291 Pyridoxal-phosphate dependent enzyme BF35_4953 PF01810 LysE type translocator BF35_4957 PF07690 Major Facilitator Superfamily BF35_4958 PF00175 Oxidoreductase NAD-binding domain BF35_4958 PF00067 Cytochrome P450 BF35_4958 PF00258 Flavodoxin BF35_4958 PF00667 FAD binding domain BF35_4959 PF12802 MarR family BF35_4961 PF08803 Putative mono-oxygenase ydhR BF35_4965 PF12833 Helix-turn-helix domain BF35_4965 PF02805 Metal binding domain of Ada BF35_4967 PF01609 Transposase DDE domain BF35_4969 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_4972 PF01037 Lrp/AsnC ligand binding domain BF35_4974 PF18665 Tetracyclin repressor-like, C-terminal domain BF35_4974 PF00440 Bacterial regulatory proteins, tetR family BF35_4975 PF00550 Phosphopantetheine attachment site BF35_4975 PF07993 Male sterility protein BF35_4976 PF07690 Major Facilitator Superfamily BF35_4977 PF01609 Transposase DDE domain BF35_4980 PF00196 Bacterial regulatory proteins, luxR family BF35_4980 PF00072 Response regulator receiver domain BF35_4986 PF01609 Transposase DDE domain BF35_4988 PF01872 RibD C-terminal domain BF35_499 PF13520 Amino acid permease BF35_4990 PF01022 Bacterial regulatory protein, arsR family BF35_4991 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_4992 PF01758 Sodium Bile acid symporter family BF35_4993 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF35_4998 PF01040 UbiA prenyltransferase family BF35_5 PF00892 EamA-like transporter family BF35_50 PF07690 Major Facilitator Superfamily BF35_500 PF00528 Binding-protein-dependent transport system inner membrane component BF35_5000 PF10057 Uncharacterized conserved protein (DUF2294) BF35_5001 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF35_5001 PF00361 Proton-conducting membrane transporter BF35_5002 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BF35_5004 PF07859 alpha/beta hydrolase fold BF35_5006 PF07690 Major Facilitator Superfamily BF35_5008 PF00875 DNA photolyase BF35_5008 PF03441 FAD binding domain of DNA photolyase BF35_501 PF00571 CBS domain BF35_501 PF00005 ABC transporter BF35_5010 PF03073 TspO/MBR family BF35_5017 PF11181 Heat induced stress protein YflT BF35_5020 PF01544 CorA-like Mg2+ transporter protein BF35_5024 PF01022 Bacterial regulatory protein, arsR family BF35_5027 PF03466 LysR substrate binding domain BF35_5027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_5031 PF00857 Isochorismatase family BF35_5032 PF00561 alpha/beta hydrolase fold BF35_5033 PF00149 Calcineurin-like phosphoesterase BF35_5033 PF17936 Bacterial Ig domain BF35_5033 PF02872 5'-nucleotidase, C-terminal domain BF35_5039 PF01235 Sodium:alanine symporter family BF35_504 PF03358 NADPH-dependent FMN reductase BF35_5041 PF04960 Glutaminase BF35_5042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_5043 PF08664 YcbB domain BF35_5043 PF00072 Response regulator receiver domain BF35_5044 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_5045 PF03845 Spore germination protein BF35_5046 PF05504 Spore germination B3/ GerAC like, C-terminal BF35_5047 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF35_5047 PF03807 NADP oxidoreductase coenzyme F420-dependent BF35_5048 PF13520 Amino acid permease BF35_5049 PF01541 GIY-YIG catalytic domain BF35_5049 PF12826 Helix-hairpin-helix motif BF35_5049 PF08459 UvrC Helix-hairpin-helix N-terminal BF35_5049 PF02151 UvrB/uvrC motif BF35_5050 PF17853 GGDEF-like domain BF35_5050 PF12833 Helix-turn-helix domain BF35_5053 PF05791 Bacillus haemolytic enterotoxin (HBL) BF35_5054 PF05791 Bacillus haemolytic enterotoxin (HBL) BF35_5055 PF13188 PAS domain BF35_5055 PF00512 His Kinase A (phospho-acceptor) domain BF35_5055 PF13426 PAS domain BF35_5055 PF00989 PAS fold BF35_5055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_5056 PF03323 Bacillus/Clostridium GerA spore germination protein BF35_5057 PF03845 Spore germination protein BF35_5058 PF05504 Spore germination B3/ GerAC like, C-terminal BF35_5059 PF01381 Helix-turn-helix BF35_5060 PF17763 Glutaminase/Asparaginase C-terminal domain BF35_5060 PF00710 Asparaginase, N-terminal BF35_5061 PF10415 Fumarase C C-terminus BF35_5061 PF00206 Lyase BF35_5063 PF13823 Alcohol dehydrogenase GroES-associated BF35_5063 PF08240 Alcohol dehydrogenase GroES-like domain BF35_5063 PF00107 Zinc-binding dehydrogenase BF35_5064 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF35_5065 PF11553 Protein of unknown function (DUF3231) BF35_5066 PF10710 Protein of unknown function (DUF2512) BF35_5067 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF35_5069 PF00324 Amino acid permease BF35_507 PF10924 Protein of unknown function (DUF2711) BF35_5070 PF01810 LysE type translocator BF35_5071 PF08892 YqcI/YcgG family BF35_5073 PF07875 Coat F domain BF35_5074 PF00753 Metallo-beta-lactamase superfamily BF35_5076 PF00391 PEP-utilising enzyme, mobile domain BF35_5076 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF35_5077 PF00440 Bacterial regulatory proteins, tetR family BF35_5079 PF02915 Rubrerythrin BF35_508 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF35_508 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF35_5086 PF02770 Acyl-CoA dehydrogenase, middle domain BF35_5086 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF35_5086 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BF35_5089 PF07454 Stage II sporulation protein P (SpoIIP) BF35_5090 PF03932 CutC family BF35_5091 PF10502 Signal peptidase, peptidase S26 BF35_5092 PF01614 Bacterial transcriptional regulator BF35_5092 PF09339 IclR helix-turn-helix domain BF35_5093 PF02682 Carboxyltransferase domain, subdomain C and D BF35_5094 PF02626 Carboxyltransferase domain, subdomain A and B BF35_5095 PF03746 LamB/YcsF family BF35_5098 PF01470 Pyroglutamyl peptidase BF35_5099 PF02146 Sir2 family BF35_5102 PF10502 Signal peptidase, peptidase S26 BF35_5104 PF00293 NUDIX domain BF35_5109 PF08713 DNA alkylation repair enzyme BF35_511 PF00144 Beta-lactamase BF35_5111 PF00324 Amino acid permease BF35_5113 PF01925 Sulfite exporter TauE/SafE BF35_5120 PF13031 Protein of unknown function (DUF3892) BF35_5121 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BF35_5124 PF02463 RecF/RecN/SMC N terminal domain BF35_5125 PF00392 Bacterial regulatory proteins, gntR family BF35_5125 PF00155 Aminotransferase class I and II BF35_5126 PF00892 EamA-like transporter family BF35_5129 PF00583 Acetyltransferase (GNAT) family BF35_5130 PF12833 Helix-turn-helix domain BF35_5135 PF00005 ABC transporter BF35_5137 PF05406 WGR domain BF35_5138 PF00293 NUDIX domain BF35_514 PF08240 Alcohol dehydrogenase GroES-like domain BF35_514 PF00107 Zinc-binding dehydrogenase BF35_5140 PF03764 Elongation factor G, domain IV BF35_5140 PF00679 Elongation factor G C-terminus BF35_5140 PF00009 Elongation factor Tu GTP binding domain BF35_5142 PF01047 MarR family BF35_5143 PF00881 Nitroreductase family BF35_5145 PF01022 Bacterial regulatory protein, arsR family BF35_5147 PF00916 Sulfate permease family BF35_5147 PF01740 STAS domain BF35_5148 PF08274 PhnA Zinc-Ribbon BF35_5148 PF03831 PhnA domain BF35_5150 PF17863 AAA lid domain BF35_5150 PF07726 ATPase family associated with various cellular activities (AAA) BF35_5154 PF00144 Beta-lactamase BF35_5155 PF13382 Adenine deaminase C-terminal domain BF35_5155 PF01979 Amidohydrolase family BF35_5157 PF00199 Catalase BF35_5157 PF06628 Catalase-related immune-responsive BF35_5158 PF00202 Aminotransferase class-III BF35_5160 PF00535 Glycosyl transferase family 2 BF35_5161 PF00535 Glycosyl transferase family 2 BF35_5163 PF00535 Glycosyl transferase family 2 BF35_5165 PF07690 Major Facilitator Superfamily BF35_5168 PF07726 ATPase family associated with various cellular activities (AAA) BF35_5168 PF17863 AAA lid domain BF35_517 PF00072 Response regulator receiver domain BF35_517 PF00196 Bacterial regulatory proteins, luxR family BF35_5173 PF12681 Glyoxalase-like domain BF35_5174 PF13302 Acetyltransferase (GNAT) domain BF35_5177 PF00072 Response regulator receiver domain BF35_5177 PF04397 LytTr DNA-binding domain BF35_5179 PF10086 YhfC intramembrane metalloprotease BF35_518 PF13185 GAF domain BF35_518 PF07730 Histidine kinase BF35_5182 PF13443 Cro/C1-type HTH DNA-binding domain BF35_5183 PF11188 Protein of unknown function (DUF2975) BF35_5184 PF00245 Alkaline phosphatase BF35_5185 PF05547 Immune inhibitor A peptidase M6 BF35_5186 PF00487 Fatty acid desaturase BF35_5187 PF01139 tRNA-splicing ligase RtcB BF35_5188 PF00324 Amino acid permease BF35_5189 PF01614 Bacterial transcriptional regulator BF35_5189 PF09339 IclR helix-turn-helix domain BF35_519 PF00924 Mechanosensitive ion channel BF35_5190 PF01546 Peptidase family M20/M25/M40 BF35_5191 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF35_5191 PF03807 NADP oxidoreductase coenzyme F420-dependent BF35_5192 PF00696 Amino acid kinase family BF35_5192 PF01472 PUA domain BF35_5193 PF00171 Aldehyde dehydrogenase family BF35_5194 PF07662 Na+ dependent nucleoside transporter C-terminus BF35_5194 PF01773 Na+ dependent nucleoside transporter N-terminus BF35_5198 PF03992 Antibiotic biosynthesis monooxygenase BF35_520 PF00011 Hsp20/alpha crystallin family BF35_5203 PF01791 DeoC/LacD family aldolase BF35_5205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF35_5205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF35_5206 PF00325 Bacterial regulatory proteins, crp family BF35_5206 PF04198 Putative sugar-binding domain BF35_5207 PF00005 ABC transporter BF35_5208 PF02653 Branched-chain amino acid transport system / permease component BF35_5209 PF02653 Branched-chain amino acid transport system / permease component BF35_521 PF09297 NADH pyrophosphatase zinc ribbon domain BF35_521 PF00293 NUDIX domain BF35_5210 PF13407 Periplasmic binding protein domain BF35_5211 PF06039 Malate:quinone oxidoreductase (Mqo) BF35_5216 PF01476 LysM domain BF35_5216 PF06725 3D domain BF35_5218 PF01636 Phosphotransferase enzyme family BF35_522 PF00857 Isochorismatase family BF35_5221 PF00793 DAHP synthetase I family BF35_5221 PF01817 Chorismate mutase type II BF35_5222 PF01264 Chorismate synthase BF35_5223 PF00155 Aminotransferase class I and II BF35_5224 PF02153 Prephenate dehydrogenase BF35_5224 PF01842 ACT domain BF35_5225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF35_5227 PF00440 Bacterial regulatory proteins, tetR family BF35_5227 PF16295 Tetracyclin repressor-like, C-terminal domain BF35_5228 PF03176 MMPL family BF35_5230 PF12848 ABC transporter BF35_5230 PF00005 ABC transporter BF35_5231 PF00884 Sulfatase BF35_5232 PF03741 Integral membrane protein TerC family BF35_5233 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF35_5235 PF03611 PTS system sugar-specific permease component BF35_5237 PF01522 Polysaccharide deacetylase BF35_5238 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_524 PF00881 Nitroreductase family BF35_5244 PF12867 DinB superfamily BF35_5245 PF13536 Putative multidrug resistance efflux transporter BF35_5249 PF02522 Aminoglycoside 3-N-acetyltransferase BF35_525 PF01063 Amino-transferase class IV BF35_5253 PF00293 NUDIX domain BF35_5253 PF09297 NADH pyrophosphatase zinc ribbon domain BF35_5255 PF00005 ABC transporter BF35_5256 PF09084 NMT1/THI5 like BF35_5257 PF00528 Binding-protein-dependent transport system inner membrane component BF35_5258 PF00296 Luciferase-like monooxygenase BF35_526 PF01497 Periplasmic binding protein BF35_5260 PF01594 AI-2E family transporter BF35_5269 PF00005 ABC transporter BF35_5273 PF03630 Fumble BF35_5274 PF07977 FabA-like domain BF35_5275 PF00155 Aminotransferase class I and II BF35_5282 PF08241 Methyltransferase domain BF35_5285 PF04226 Transglycosylase associated protein BF35_5289 PF07690 Major Facilitator Superfamily BF35_5290 PF12793 Sugar transport-related sRNA regulator N-term BF35_5290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_5291 PF13171 Protein of unknown function (DUF4004) BF35_5292 PF04519 Polymer-forming cytoskeletal BF35_5294 PF07690 Major Facilitator Superfamily BF35_530 PF00733 Asparagine synthase BF35_530 PF13537 Glutamine amidotransferase domain BF35_5302 PF07552 Spore Coat Protein X and V domain BF35_5303 PF02645 Uncharacterised protein, DegV family COG1307 BF35_5304 PF08439 Oligopeptidase F BF35_5304 PF01432 Peptidase family M3 BF35_5305 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF35_5307 PF01048 Phosphorylase superfamily BF35_531 PF00011 Hsp20/alpha crystallin family BF35_5312 PF00486 Transcriptional regulatory protein, C terminal BF35_5312 PF00072 Response regulator receiver domain BF35_5313 PF00512 His Kinase A (phospho-acceptor) domain BF35_5313 PF00672 HAMP domain BF35_5313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_5314 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF35_5314 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF35_5318 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF35_532 PF02630 SCO1/SenC BF35_5320 PF01965 DJ-1/PfpI family BF35_5323 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF35_5323 PF13378 Enolase C-terminal domain-like BF35_5324 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BF35_5324 PF00877 NlpC/P60 family BF35_5325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_5329 PF04914 DltD protein BF35_5332 PF09335 SNARE associated Golgi protein BF35_5333 PF08876 Domain of unknown function (DUF1836) BF35_5337 PF04324 BFD-like [2Fe-2S] binding domain BF35_5337 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_534 PF02645 Uncharacterised protein, DegV family COG1307 BF35_5340 PF00158 Sigma-54 interaction domain BF35_5340 PF13188 PAS domain BF35_5340 PF02954 Bacterial regulatory protein, Fis family BF35_5341 PF01266 FAD dependent oxidoreductase BF35_5342 PF05544 Proline racemase BF35_5343 PF05544 Proline racemase BF35_5344 PF00701 Dihydrodipicolinate synthetase family BF35_5345 PF00171 Aldehyde dehydrogenase family BF35_5346 PF01235 Sodium:alanine symporter family BF35_5347 PF02627 Carboxymuconolactone decarboxylase family BF35_5350 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF35_5350 PF18416 N-acetylglucosamine binding protein domain 2 BF35_5351 PF02833 DHHA2 domain BF35_5351 PF01368 DHH family BF35_536 PF00902 Sec-independent protein translocase protein (TatC) BF35_5360 PF00570 HRDC domain BF35_5360 PF09382 RQC domain BF35_5360 PF00270 DEAD/DEAH box helicase BF35_5360 PF00271 Helicase conserved C-terminal domain BF35_5360 PF16124 RecQ zinc-binding BF35_5361 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BF35_5364 PF13538 UvrD-like helicase C-terminal domain BF35_537 PF02416 mttA/Hcf106 family BF35_5374 PF00665 Integrase core domain BF35_5374 PF13333 Integrase core domain BF35_5374 PF13276 HTH-like domain BF35_5376 PF00753 Metallo-beta-lactamase superfamily BF35_5376 PF13567 Domain of unknown function (DUF4131) BF35_5376 PF03772 Competence protein BF35_5378 PF04237 YjbR BF35_5379 PF08241 Methyltransferase domain BF35_538 PF03006 Haemolysin-III related BF35_5380 PF10990 Protein of unknown function (DUF2809) BF35_5383 PF03781 Sulfatase-modifying factor enzyme 1 BF35_5384 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF35_5385 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF35_5385 PF18416 N-acetylglucosamine binding protein domain 2 BF35_5386 PF13673 Acetyltransferase (GNAT) domain BF35_5387 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF35_539 PF01553 Acyltransferase BF35_5390 PF00574 Clp protease BF35_5391 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF35_5392 PF00571 CBS domain BF35_5392 PF00005 ABC transporter BF35_5394 PF00528 Binding-protein-dependent transport system inner membrane component BF35_54 PF00293 NUDIX domain BF35_54 PF13344 Haloacid dehalogenase-like hydrolase BF35_540 PF02525 Flavodoxin-like fold BF35_5401 PF13673 Acetyltransferase (GNAT) domain BF35_5401 PF04229 GrpB protein BF35_5402 PF00106 short chain dehydrogenase BF35_5404 PF00676 Dehydrogenase E1 component BF35_5405 PF02779 Transketolase, pyrimidine binding domain BF35_5405 PF02780 Transketolase, C-terminal domain BF35_5406 PF02817 e3 binding domain BF35_5406 PF00364 Biotin-requiring enzyme BF35_5406 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF35_5407 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_5407 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF35_541 PF05223 NTF2-like N-terminal transpeptidase domain BF35_541 PF03717 Penicillin-binding Protein dimerisation domain BF35_541 PF00905 Penicillin binding protein transpeptidase domain BF35_5411 PF08220 DeoR-like helix-turn-helix domain BF35_5411 PF00455 DeoR C terminal sensor domain BF35_5412 PF13302 Acetyltransferase (GNAT) domain BF35_5415 PF01590 GAF domain BF35_5415 PF00158 Sigma-54 interaction domain BF35_5415 PF02954 Bacterial regulatory protein, Fis family BF35_5419 PF08359 YsiA-like protein, C-terminal region BF35_5419 PF00440 Bacterial regulatory proteins, tetR family BF35_542 PF00186 Dihydrofolate reductase BF35_5420 PF00266 Aminotransferase class-V BF35_5421 PF04199 Putative cyclase BF35_5422 PF03301 Tryptophan 2,3-dioxygenase BF35_5426 PF07486 Cell Wall Hydrolase BF35_5426 PF01471 Putative peptidoglycan binding domain BF35_5427 PF14620 YpeB sporulation BF35_5427 PF03413 Peptidase propeptide and YPEB domain BF35_5428 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF35_543 PF00303 Thymidylate synthase BF35_5431 PF06081 Aromatic acid exporter family member 1 BF35_5434 PF00005 ABC transporter BF35_5437 PF00664 ABC transporter transmembrane region BF35_5437 PF00005 ABC transporter BF35_5437 PF03412 Peptidase C39 family BF35_5445 PF13152 Protein of unknown function (DUF3967) BF35_5445 PF13411 MerR HTH family regulatory protein BF35_5447 PF01381 Helix-turn-helix BF35_5449 PF00589 Phage integrase family BF35_545 PF00144 Beta-lactamase BF35_545 PF07930 D-aminopeptidase, domain B BF35_5451 PF13614 AAA domain BF35_5452 PF08708 Primase C terminal 1 (PriCT-1) BF35_5454 PF00005 ABC transporter BF35_5463 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) BF35_5464 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) BF35_5465 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) BF35_5467 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) BF35_5468 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) BF35_5469 PF14867 Lantibiotic alpha BF35_5470 PF14867 Lantibiotic alpha BF35_5471 PF14867 Lantibiotic alpha BF35_5473 PF00082 Subtilase family BF35_549 PF13419 Haloacid dehalogenase-like hydrolase BF35_550 PF14005 YpjP-like protein BF35_551 PF05975 Bacterial ABC transporter protein EcsB BF35_552 PF00005 ABC transporter BF35_555 PF00583 Acetyltransferase (GNAT) family BF35_556 PF01980 tRNA-methyltransferase O BF35_557 PF01177 Asp/Glu/Hydantoin racemase BF35_558 PF00465 Iron-containing alcohol dehydrogenase BF35_560 PF13419 Haloacid dehalogenase-like hydrolase BF35_561 PF10997 Alternate to MurJ BF35_564 PF00209 Sodium:neurotransmitter symporter family BF35_57 PF01270 Glycosyl hydrolases family 8 BF35_578 PF01580 FtsK/SpoIIIE family BF35_578 PF12538 DNA transporter BF35_58 PF00892 EamA-like transporter family BF35_582 PF01336 OB-fold nucleic acid binding domain BF35_582 PF00152 tRNA synthetases class II (D, K and N) BF35_585 PF08264 Anticodon-binding domain of tRNA BF35_585 PF00133 tRNA synthetases class I (I, L, M and V) BF35_59 PF00392 Bacterial regulatory proteins, gntR family BF35_59 PF00155 Aminotransferase class I and II BF35_592 PF00750 tRNA synthetases class I (R) BF35_592 PF05746 DALR anticodon binding domain BF35_592 PF03485 Arginyl tRNA synthetase N terminal domain BF35_593 PF04445 Putative SAM-dependent methyltransferase BF35_594 PF06491 Disulphide isomerase BF35_596 PF08712 Scaffold protein Nfu/NifU N terminal BF35_596 PF13769 Virulence factor BF35_597 PF00436 Single-strand binding protein family BF35_6 PF11638 DnaA N-terminal domain BF35_6 PF08299 Bacterial dnaA protein helix-turn-helix BF35_6 PF00308 Bacterial dnaA protein BF35_600 PF00005 ABC transporter BF35_600 PF12848 ABC transporter BF35_600 PF16326 ABC transporter C-terminal domain BF35_601 PF01966 HD domain BF35_604 PF01510 N-acetylmuramoyl-L-alanine amidase BF35_607 PF04232 Stage V sporulation protein S (SpoVS) BF35_612 PF04405 Domain of Unknown function (DUF542) BF35_612 PF01814 Hemerythrin HHE cation binding domain BF35_613 PF04324 BFD-like [2Fe-2S] binding domain BF35_613 PF18267 Rubredoxin NAD+ reductase C-terminal domain BF35_613 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF35_613 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF35_613 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF35_614 PF00355 Rieske [2Fe-2S] domain BF35_615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF35_616 PF01903 CbiX BF35_62 PF03009 Glycerophosphoryl diester phosphodiesterase family BF35_621 PF07690 Major Facilitator Superfamily BF35_623 PF02391 MoaE protein BF35_624 PF00994 Probable molybdopterin binding domain BF35_624 PF03453 MoeA N-terminal region (domain I and II) BF35_624 PF03454 MoeA C-terminal region (domain IV) BF35_625 PF00899 ThiF family BF35_626 PF04055 Radical SAM superfamily BF35_626 PF06463 Molybdenum Cofactor Synthesis C BF35_627 PF00325 Bacterial regulatory proteins, crp family BF35_627 PF00027 Cyclic nucleotide-binding domain BF35_628 PF02665 Nitrate reductase gamma subunit BF35_629 PF02613 Nitrate reductase delta subunit BF35_630 PF14711 Respiratory nitrate reductase beta C-terminal BF35_630 PF13247 4Fe-4S dicluster domain BF35_631 PF14710 Respiratory nitrate reductase alpha N-terminal BF35_631 PF00384 Molybdopterin oxidoreductase BF35_631 PF01568 Molydopterin dinucleotide binding domain BF35_634 PF17863 AAA lid domain BF35_634 PF07726 ATPase family associated with various cellular activities (AAA) BF35_637 PF01841 Transglutaminase-like superfamily BF35_637 PF13559 Domain of unknown function (DUF4129) BF35_637 PF11992 Domain of unknown function (DUF3488) BF35_638 PF00255 Glutathione peroxidase BF35_640 PF01613 Flavin reductase like domain BF35_640 PF00258 Flavodoxin BF35_644 PF08281 Sigma-70, region 4 BF35_644 PF04542 Sigma-70 region 2 BF35_645 PF00107 Zinc-binding dehydrogenase BF35_645 PF08240 Alcohol dehydrogenase GroES-like domain BF35_647 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_648 PF01261 Xylose isomerase-like TIM barrel BF35_649 PF00270 DEAD/DEAH box helicase BF35_649 PF00271 Helicase conserved C-terminal domain BF35_651 PF01268 Formate--tetrahydrofolate ligase BF35_652 PF01209 ubiE/COQ5 methyltransferase family BF35_657 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF35_66 PF07690 Major Facilitator Superfamily BF35_665 PF00583 Acetyltransferase (GNAT) family BF35_671 PF00392 Bacterial regulatory proteins, gntR family BF35_671 PF00155 Aminotransferase class I and II BF35_672 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF35_672 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF35_673 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF35_677 PF00842 Alanine racemase, C-terminal domain BF35_677 PF01168 Alanine racemase, N-terminal domain BF35_68 PF01965 DJ-1/PfpI family BF35_680 PF00300 Histidine phosphatase superfamily (branch 1) BF35_681 PF01361 Tautomerase enzyme BF35_683 PF00682 HMGL-like BF35_683 PF07836 DmpG-like communication domain BF35_684 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation BF35_684 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF35_685 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF35_686 PF00171 Aldehyde dehydrogenase family BF35_687 PF01042 Endoribonuclease L-PSP BF35_689 PF06052 3-hydroxyanthranilic acid dioxygenase BF35_690 PF06574 FAD synthetase BF35_692 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal BF35_692 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal BF35_693 PF01145 SPFH domain / Band 7 family BF35_695 PF07690 Major Facilitator Superfamily BF35_696 PF01425 Amidase BF35_697 PF00293 NUDIX domain BF35_698 PF02557 D-alanyl-D-alanine carboxypeptidase BF35_7 PF00344 SecY translocase BF35_700 PF07454 Stage II sporulation protein P (SpoIIP) BF35_703 PF01588 Putative tRNA binding domain BF35_704 PF05525 Branched-chain amino acid transport protein BF35_705 PF13333 Integrase core domain BF35_705 PF00665 Integrase core domain BF35_705 PF13276 HTH-like domain BF35_709 PF01595 Cyclin M transmembrane N-terminal domain BF35_709 PF03471 Transporter associated domain BF35_709 PF00571 CBS domain BF35_710 PF04306 Protein of unknown function (DUF456) BF35_711 PF13460 NAD(P)H-binding BF35_714 PF13396 Phospholipase_D-nuclease N-terminal BF35_714 PF13091 PLD-like domain BF35_715 PF03061 Thioesterase superfamily BF35_716 PF09323 Domain of unknown function (DUF1980) BF35_717 PF03773 Predicted permease BF35_719 PF14667 Polysaccharide biosynthesis C-terminal domain BF35_719 PF01943 Polysaccharide biosynthesis protein BF35_720 PF09335 SNARE associated Golgi protein BF35_721 PF00293 NUDIX domain BF35_722 PF08757 CotH kinase protein BF35_724 PF00300 Histidine phosphatase superfamily (branch 1) BF35_726 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF35_727 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_729 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF35_729 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF35_730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF35_731 PF13460 NAD(P)H-binding BF35_733 PF01297 Zinc-uptake complex component A periplasmic BF35_733 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF35_734 PF00583 Acetyltransferase (GNAT) family BF35_735 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF35_735 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF35_736 PF00248 Aldo/keto reductase family BF35_737 PF13302 Acetyltransferase (GNAT) domain BF35_738 PF01593 Flavin containing amine oxidoreductase BF35_740 PF00296 Luciferase-like monooxygenase BF35_743 PF00210 Ferritin-like domain BF35_747 PF00672 HAMP domain BF35_747 PF02743 Cache domain BF35_747 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF35_748 PF03193 RsgA GTPase BF35_751 PF07690 Major Facilitator Superfamily BF35_752 PF00248 Aldo/keto reductase family BF35_753 PF01022 Bacterial regulatory protein, arsR family BF35_754 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BF35_754 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BF35_755 PF00082 Subtilase family BF35_756 PF18277 AbrB C-terminal domain BF35_756 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF35_757 PF02687 FtsX-like permease family BF35_758 PF02540 NAD synthase BF35_759 PF00293 NUDIX domain BF35_759 PF13344 Haloacid dehalogenase-like hydrolase BF35_764 PF01734 Patatin-like phospholipase BF35_766 PF00392 Bacterial regulatory proteins, gntR family BF35_766 PF00155 Aminotransferase class I and II BF35_767 PF01810 LysE type translocator BF35_768 PF07690 Major Facilitator Superfamily BF35_769 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF35_770 PF01261 Xylose isomerase-like TIM barrel BF35_773 PF00501 AMP-binding enzyme BF35_773 PF13193 AMP-binding enzyme C-terminal domain BF35_774 PF06276 Ferric iron reductase FhuF-like transporter BF35_774 PF04183 IucA / IucC family BF35_775 PF06276 Ferric iron reductase FhuF-like transporter BF35_775 PF04183 IucA / IucC family BF35_776 PF00583 Acetyltransferase (GNAT) family BF35_777 PF02308 MgtC family BF35_779 PF01522 Polysaccharide deacetylase BF35_78 PF08361 MAATS-type transcriptional repressor, C-terminal region BF35_78 PF00440 Bacterial regulatory proteins, tetR family BF35_780 PF00512 His Kinase A (phospho-acceptor) domain BF35_780 PF00989 PAS fold BF35_780 PF16736 Single Cache-like BF35_780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_781 PF00486 Transcriptional regulatory protein, C terminal BF35_781 PF00072 Response regulator receiver domain BF35_783 PF03816 Cell envelope-related transcriptional attenuator domain BF35_786 PF08544 GHMP kinases C terminal BF35_786 PF00288 GHMP kinases N terminal domain BF35_787 PF00291 Pyridoxal-phosphate dependent enzyme BF35_788 PF00742 Homoserine dehydrogenase BF35_788 PF03447 Homoserine dehydrogenase, NAD binding domain BF35_788 PF01842 ACT domain BF35_792 PF01522 Polysaccharide deacetylase BF35_792 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF35_793 PF04439 Streptomycin adenylyltransferase BF35_795 PF00106 short chain dehydrogenase BF35_797 PF16736 Single Cache-like BF35_797 PF00989 PAS fold BF35_797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_797 PF00512 His Kinase A (phospho-acceptor) domain BF35_798 PF00486 Transcriptional regulatory protein, C terminal BF35_798 PF00072 Response regulator receiver domain BF35_799 PF00664 ABC transporter transmembrane region BF35_799 PF00005 ABC transporter BF35_8 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF35_8 PF01447 Thermolysin metallopeptidase, catalytic domain BF35_8 PF03413 Peptidase propeptide and YPEB domain BF35_80 PF01569 PAP2 superfamily BF35_801 PF01476 LysM domain BF35_801 PF00877 NlpC/P60 family BF35_804 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_804 PF07943 Penicillin-binding protein 5, C-terminal domain BF35_805 PF17676 LD-carboxypeptidase C-terminal domain BF35_805 PF02016 LD-carboxypeptidase N-terminal domain BF35_808 PF00132 Bacterial transferase hexapeptide (six repeats) BF35_809 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF35_81 PF08240 Alcohol dehydrogenase GroES-like domain BF35_81 PF00107 Zinc-binding dehydrogenase BF35_810 PF00535 Glycosyl transferase family 2 BF35_812 PF00005 ABC transporter BF35_812 PF00664 ABC transporter transmembrane region BF35_813 PF00005 ABC transporter BF35_813 PF00664 ABC transporter transmembrane region BF35_814 PF02322 Cytochrome bd terminal oxidase subunit II BF35_815 PF01654 Cytochrome bd terminal oxidase subunit I BF35_817 PF01047 MarR family BF35_819 PF14552 Tautomerase enzyme BF35_82 PF04229 GrpB protein BF35_821 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_821 PF03466 LysR substrate binding domain BF35_823 PF02653 Branched-chain amino acid transport system / permease component BF35_824 PF00005 ABC transporter BF35_825 PF00005 ABC transporter BF35_825 PF12399 Branched-chain amino acid ATP-binding cassette transporter BF35_828 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF35_828 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF35_829 PF01575 MaoC like domain BF35_830 PF00501 AMP-binding enzyme BF35_830 PF13193 AMP-binding enzyme C-terminal domain BF35_832 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF35_832 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF35_833 PF01593 Flavin containing amine oxidoreductase BF35_834 PF00056 lactate/malate dehydrogenase, NAD binding domain BF35_834 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF35_835 PF01594 AI-2E family transporter BF35_836 PF01425 Amidase BF35_838 PF00881 Nitroreductase family BF35_839 PF01323 DSBA-like thioredoxin domain BF35_84 PF00512 His Kinase A (phospho-acceptor) domain BF35_84 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_840 PF02082 Transcriptional regulator BF35_841 PF03466 LysR substrate binding domain BF35_841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF35_842 PF00892 EamA-like transporter family BF35_843 PF07987 Domain of unkown function (DUF1775) BF35_844 PF04234 CopC domain BF35_844 PF05425 Copper resistance protein D BF35_844 PF13115 YtkA-like BF35_846 PF05525 Branched-chain amino acid transport protein BF35_847 PF02525 Flavodoxin-like fold BF35_849 PF07690 Major Facilitator Superfamily BF35_853 PF07732 Multicopper oxidase BF35_853 PF07731 Multicopper oxidase BF35_853 PF00394 Multicopper oxidase BF35_854 PF05195 Aminopeptidase P, N-terminal domain BF35_854 PF00557 Metallopeptidase family M24 BF35_855 PF05979 Bacterial protein of unknown function (DUF896) BF35_856 PF07301 Protein of unknown function (DUF1453) BF35_858 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF35_859 PF02885 Glycosyl transferase family, helical bundle domain BF35_859 PF00591 Glycosyl transferase family, a/b domain BF35_859 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF35_860 PF07662 Na+ dependent nucleoside transporter C-terminus BF35_860 PF01773 Na+ dependent nucleoside transporter N-terminus BF35_861 PF01791 DeoC/LacD family aldolase BF35_862 PF04198 Putative sugar-binding domain BF35_863 PF00440 Bacterial regulatory proteins, tetR family BF35_865 PF01906 Putative heavy-metal-binding BF35_867 PF05791 Bacillus haemolytic enterotoxin (HBL) BF35_868 PF05791 Bacillus haemolytic enterotoxin (HBL) BF35_87 PF00005 ABC transporter BF35_87 PF12558 ATP-binding cassette cobalt transporter BF35_870 PF13520 Amino acid permease BF35_872 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF35_872 PF02558 Ketopantoate reductase PanE/ApbA BF35_875 PF01566 Natural resistance-associated macrophage protein BF35_879 PF00072 Response regulator receiver domain BF35_879 PF00486 Transcriptional regulatory protein, C terminal BF35_88 PF07155 ECF-type riboflavin transporter, S component BF35_880 PF13302 Acetyltransferase (GNAT) domain BF35_884 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_889 PF01979 Amidohydrolase family BF35_89 PF01177 Asp/Glu/Hydantoin racemase BF35_892 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BF35_892 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BF35_893 PF00072 Response regulator receiver domain BF35_893 PF04397 LytTr DNA-binding domain BF35_896 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BF35_897 PF07690 Major Facilitator Superfamily BF35_9 PF00128 Alpha amylase, catalytic domain BF35_9 PF03714 Bacterial pullanase-associated domain BF35_9 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF35_90 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF35_900 PF09587 Bacterial capsule synthesis protein PGA_cap BF35_902 PF00585 C-terminal regulatory domain of Threonine dehydratase BF35_902 PF00291 Pyridoxal-phosphate dependent enzyme BF35_903 PF00920 Dehydratase family BF35_904 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF35_904 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF35_906 PF00205 Thiamine pyrophosphate enzyme, central domain BF35_906 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF35_906 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF35_907 PF01063 Amino-transferase class IV BF35_908 PF01625 Peptide methionine sulfoxide reductase BF35_91 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_91 PF13426 PAS domain BF35_91 PF00512 His Kinase A (phospho-acceptor) domain BF35_91 PF00989 PAS fold BF35_91 PF13188 PAS domain BF35_912 PF04239 Protein of unknown function (DUF421) BF35_914 PF00457 Glycosyl hydrolases family 11 BF35_914 PF03422 Carbohydrate binding module (family 6) BF35_914 PF01522 Polysaccharide deacetylase BF35_915 PF00209 Sodium:neurotransmitter symporter family BF35_916 PF01943 Polysaccharide biosynthesis protein BF35_916 PF14667 Polysaccharide biosynthesis C-terminal domain BF35_919 PF00291 Pyridoxal-phosphate dependent enzyme BF35_920 PF07690 Major Facilitator Superfamily BF35_921 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF35_922 PF16360 GTP-binding GTPase Middle Region BF35_922 PF13167 GTP-binding GTPase N-terminal BF35_922 PF01926 50S ribosome-binding GTPase BF35_924 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF35_924 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF35_925 PF07690 Major Facilitator Superfamily BF35_926 PF07690 Major Facilitator Superfamily BF35_929 PF03976 Polyphosphate kinase 2 (PPK2) BF35_931 PF07690 Major Facilitator Superfamily BF35_933 PF00395 S-layer homology domain BF35_933 PF02368 Bacterial Ig-like domain (group 2) BF35_934 PF00293 NUDIX domain BF35_935 PF14158 YndJ-like protein BF35_938 PF00696 Amino acid kinase family BF35_938 PF13840 ACT domain BF35_94 PF00067 Cytochrome P450 BF35_940 PF01381 Helix-turn-helix BF35_941 PF03590 Aspartate-ammonia ligase BF35_943 PF04434 SWIM zinc finger BF35_943 PF00271 Helicase conserved C-terminal domain BF35_943 PF00176 SNF2 family N-terminal domain BF35_944 PF08664 YcbB domain BF35_944 PF00072 Response regulator receiver domain BF35_945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_946 PF03949 Malic enzyme, NAD binding domain BF35_946 PF00390 Malic enzyme, N-terminal domain BF35_947 PF10415 Fumarase C C-terminus BF35_947 PF00206 Lyase BF35_948 PF00375 Sodium:dicarboxylate symporter family BF35_949 PF00696 Amino acid kinase family BF35_950 PF13091 PLD-like domain BF35_953 PF00005 ABC transporter BF35_954 PF13492 GAF domain BF35_954 PF13185 GAF domain BF35_954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF35_954 PF07730 Histidine kinase BF35_955 PF00196 Bacterial regulatory proteins, luxR family BF35_955 PF00072 Response regulator receiver domain BF35_96 PF07561 Domain of Unknown Function (DUF1540) BF35_960 PF04286 Protein of unknown function (DUF445) BF35_961 PF00291 Pyridoxal-phosphate dependent enzyme BF35_964 PF00578 AhpC/TSA family BF35_965 PF02683 Cytochrome C biogenesis protein transmembrane region BF35_969 PF03575 Peptidase family S51 BF35_97 PF00132 Bacterial transferase hexapeptide (six repeats) BF35_970 PF01554 MatE BF35_972 PF00753 Metallo-beta-lactamase superfamily BF35_974 PF00206 Lyase BF35_974 PF10415 Fumarase C C-terminus BF35_975 PF00106 short chain dehydrogenase BF35_976 PF13411 MerR HTH family regulatory protein BF35_977 PF03553 Na+/H+ antiporter family BF35_978 PF00535 Glycosyl transferase family 2 BF35_980 PF03773 Predicted permease BF35_981 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF35_981 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF35_982 PF00892 EamA-like transporter family BF35_983 PF00392 Bacterial regulatory proteins, gntR family BF35_983 PF07729 FCD domain BF35_985 PF01545 Cation efflux family BF35_985 PF16916 Dimerisation domain of Zinc Transporter BF35_989 PF00733 Asparagine synthase BF35_989 PF13537 Glutamine amidotransferase domain BF35_99 PF00067 Cytochrome P450 BF35_991 PF01047 MarR family BF35_996 PF13021 Domain of unknown function (DUF3885) BF35_997 PF00768 D-alanyl-D-alanine carboxypeptidase BF35_997 PF07943 Penicillin-binding protein 5, C-terminal domain