BF35_10 SM00014 Acid phosphatase homologues BF35_1002 SM00849 Metallo-beta-lactamase superfamily BF35_1002 SM01027 Beta-Casp domain BF35_1005 SM00382 ATPases associated with a variety of cellular activities BF35_1010 SM00530 Helix-turn-helix XRE-family like proteins BF35_1016 SM01321 BF35_1016 BF35_1025 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF35_1027 SM00382 ATPases associated with a variety of cellular activities BF35_1027 SM00962 SRP54-type protein, GTPase domain BF35_1041 SM00260 Two component signalling adaptor domain BF35_1041 SM00448 cheY-homologous receiver domain BF35_1048 SM00382 ATPases associated with a variety of cellular activities BF35_1063 SM00138 Methyltransferase, chemotaxis proteins BF35_1067 SM00073 Histidine Phosphotransfer domain BF35_1067 SM00260 Two component signalling adaptor domain BF35_1067 SM00387 Histidine kinase-like ATPases BF35_1067 SM01231 BF35_1067 BF35_1068 SM00448 cheY-homologous receiver domain BF35_108 SM00644 BF35_108 BF35_1086 SM00422 helix_turn_helix, mercury resistance BF35_1086 SM00871 Bacterial transcription activator, effector binding domain BF35_1087 SM00849 Metallo-beta-lactamase superfamily BF35_1097 SM00357 Cold shock protein domain BF35_1119 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF35_1119 SM00475 5'-3' exonuclease BF35_1125 SM00450 Rhodanese Homology Domain BF35_1137 SM00491 BF35_1137 BF35_1139 SM00981 BF35_1139 BF35_1152 SM00478 endonuclease III BF35_1152 SM00525 BF35_1152 BF35_1157 SM00479 BF35_1157 BF35_1157 SM00491 BF35_1157 BF35_1166 SM00851 MGS-like domain BF35_1170 SM00986 Uracil DNA glycosylase superfamily BF35_1170 SM00987 UreE urease accessory protein, C-terminal domain BF35_1179 SM00914 BF35_1179 BF35_1180 SM00028 Tetratricopeptide repeats BF35_1184 SM00562 BF35_1184 BF35_1189 SM00411 bacterial (prokaryotic) histone like domain BF35_1201 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_1204 SM00870 BF35_1204 BF35_1206 SM00644 BF35_1206 BF35_1208 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF35_1210 SM00422 helix_turn_helix, mercury resistance BF35_1212 SM00257 Lysin motif BF35_1214 SM00487 DEAD-like helicases superfamily BF35_1214 SM00490 helicase superfamily c-terminal domain BF35_1219 SM00257 Lysin motif BF35_1221 SM00091 PAS domain BF35_1221 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_1221 SM00387 Histidine kinase-like ATPases BF35_1221 SM00388 His Kinase A (phosphoacceptor) domain BF35_1222 SM00448 cheY-homologous receiver domain BF35_1222 SM00862 Transcriptional regulatory protein, C terminal BF35_1226 SM00363 S4 RNA-binding domain BF35_1236 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_1236 SM00387 Histidine kinase-like ATPases BF35_1236 SM00388 His Kinase A (phosphoacceptor) domain BF35_1240 SM00091 PAS domain BF35_1240 SM00387 Histidine kinase-like ATPases BF35_1240 SM00388 His Kinase A (phosphoacceptor) domain BF35_1258 SM00421 helix_turn_helix, Lux Regulon BF35_1258 SM00448 cheY-homologous receiver domain BF35_1259 SM00387 Histidine kinase-like ATPases BF35_126 SM00507 HNH nucleases BF35_1295 SM01329 BF35_1295 BF35_1296 SM00917 LeuA allosteric (dimerisation) domain BF35_1309 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_133 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF35_1333 SM00344 helix_turn_helix ASNC type BF35_1337 SM00382 ATPases associated with a variety of cellular activities BF35_1339 SM00382 ATPases associated with a variety of cellular activities BF35_1340 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_1355 SM00387 Histidine kinase-like ATPases BF35_1355 SM00388 His Kinase A (phosphoacceptor) domain BF35_1359 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_1360 SM00387 Histidine kinase-like ATPases BF35_1360 SM00388 His Kinase A (phosphoacceptor) domain BF35_1364 SM01007 Class II Aldolase and Adducin N-terminal domain BF35_1365 SM00365 Leucine-rich repeat, SDS22-like subfamily BF35_1365 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF35_1365 SM00725 NEAr Transporter domain BF35_1367 SM00420 helix_turn_helix, Deoxyribose operon repressor BF35_1367 SM01134 BF35_1367 BF35_1372 SM00382 ATPases associated with a variety of cellular activities BF35_1379 SM00822 BF35_1379 BF35_1393 SM00895 BF35_1393 BF35_1394 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_1395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_1395 SM00387 Histidine kinase-like ATPases BF35_1395 SM00388 His Kinase A (phosphoacceptor) domain BF35_1396 SM00448 cheY-homologous receiver domain BF35_1396 SM00862 Transcriptional regulatory protein, C terminal BF35_1406 SM00014 Acid phosphatase homologues BF35_1410 SM00382 ATPases associated with a variety of cellular activities BF35_1415 SM00530 Helix-turn-helix XRE-family like proteins BF35_1436 SM00530 Helix-turn-helix XRE-family like proteins BF35_1437 SM00861 Transketolase, pyrimidine binding domain BF35_1447 SM01324 BF35_1447 BF35_148 SM00966 SpoVT / AbrB like domain BF35_1492 SM00954 Region found in RelA / SpoT proteins BF35_1494 SM01118 BF35_1494 BF35_1500 SM00155 Phospholipase D. Active site motifs. BF35_1507 SM00382 ATPases associated with a variety of cellular activities BF35_1508 SM00382 ATPases associated with a variety of cellular activities BF35_1516 SM00825 Beta-ketoacyl synthase BF35_1522 SM00382 ATPases associated with a variety of cellular activities BF35_1522 SM01086 C-terminal, D2-small domain, of ClpB protein BF35_1530 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_1532 SM00530 Helix-turn-helix XRE-family like proteins BF35_1533 SM00642 Alpha-amylase domain BF35_1535 SM01060 BF35_1535 BF35_154 SM00530 Helix-turn-helix XRE-family like proteins BF35_155 SM00530 Helix-turn-helix XRE-family like proteins BF35_1563 SM00357 Cold shock protein domain BF35_1571 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_1571 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_1577 SM00448 cheY-homologous receiver domain BF35_1577 SM00862 Transcriptional regulatory protein, C terminal BF35_1578 SM00387 Histidine kinase-like ATPases BF35_1578 SM00388 His Kinase A (phosphoacceptor) domain BF35_1580 SM00342 helix_turn_helix, arabinose operon control protein BF35_1580 SM00871 Bacterial transcription activator, effector binding domain BF35_1583 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_1591 SM00725 NEAr Transporter domain BF35_1596 SM00849 Metallo-beta-lactamase superfamily BF35_1598 SM00354 helix_turn _helix lactose operon repressor BF35_1618 SM00422 helix_turn_helix, mercury resistance BF35_1630 SM00382 ATPases associated with a variety of cellular activities BF35_1633 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_165 SM01209 BF35_165 BF35_166 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_1665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_1672 SM00421 helix_turn_helix, Lux Regulon BF35_1672 SM00448 cheY-homologous receiver domain BF35_1673 SM00387 Histidine kinase-like ATPases BF35_1674 SM00829 Enoylreductase BF35_1683 SM00387 Histidine kinase-like ATPases BF35_1683 SM00388 His Kinase A (phosphoacceptor) domain BF35_1683 SM00448 cheY-homologous receiver domain BF35_1684 SM00138 Methyltransferase, chemotaxis proteins BF35_1685 SM00331 Sigma factor PP2C-like phosphatases BF35_1685 SM00448 cheY-homologous receiver domain BF35_1700 SM00460 Transglutaminase/protease-like homologues BF35_1702 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_1705 SM00028 Tetratricopeptide repeats BF35_1709 SM01120 BF35_1709 BF35_1716 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_172 SM00382 ATPases associated with a variety of cellular activities BF35_1738 SM00422 helix_turn_helix, mercury resistance BF35_1741 SM00487 DEAD-like helicases superfamily BF35_1741 SM00490 helicase superfamily c-terminal domain BF35_1743 SM00487 DEAD-like helicases superfamily BF35_1743 SM00490 helicase superfamily c-terminal domain BF35_1746 SM00448 cheY-homologous receiver domain BF35_1747 SM00091 PAS domain BF35_1747 SM00387 Histidine kinase-like ATPases BF35_175 SM00382 ATPases associated with a variety of cellular activities BF35_1758 SM00646 BF35_1758 BF35_177 SM00387 Histidine kinase-like ATPases BF35_1770 SM00957 SecA DEAD-like domain BF35_1770 SM00958 SecA preprotein cross-linking domain BF35_1778 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_1779 SM00644 BF35_1779 BF35_178 SM00448 cheY-homologous receiver domain BF35_178 SM00862 Transcriptional regulatory protein, C terminal BF35_1793 SM00382 ATPases associated with a variety of cellular activities BF35_1795 SM00062 Bacterial periplasmic substrate-binding proteins BF35_1795 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF35_1796 SM00382 ATPases associated with a variety of cellular activities BF35_1797 SM00382 ATPases associated with a variety of cellular activities BF35_1803 SM01060 BF35_1803 BF35_1817 SM00344 helix_turn_helix ASNC type BF35_1837 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF35_1848 SM00382 ATPases associated with a variety of cellular activities BF35_1850 SM00862 Transcriptional regulatory protein, C terminal BF35_1853 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_1854 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_1864 SM00287 Bacterial SH3 domain homologues BF35_1874 SM00829 Enoylreductase BF35_1879 SM00450 Rhodanese Homology Domain BF35_1880 SM00450 Rhodanese Homology Domain BF35_1883 SM00450 Rhodanese Homology Domain BF35_1883 SM00849 Metallo-beta-lactamase superfamily BF35_1884 SM00450 Rhodanese Homology Domain BF35_1886 SM00450 Rhodanese Homology Domain BF35_1889 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_1902 SM00354 helix_turn _helix lactose operon repressor BF35_1904 SM00640 Glycosyl hydrolases family 32 BF35_1912 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_1929 SM00382 ATPases associated with a variety of cellular activities BF35_193 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_1931 SM00287 Bacterial SH3 domain homologues BF35_1935 SM00116 Domain in cystathionine beta-synthase and other proteins. BF35_196 SM00342 helix_turn_helix, arabinose operon control protein BF35_1964 SM00899 BF35_1964 BF35_1982 SM00530 Helix-turn-helix XRE-family like proteins BF35_1991 SM00530 Helix-turn-helix XRE-family like proteins BF35_1993 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_2000 SM00770 Zinc dependent phospholipase C (alpha toxin) BF35_2002 SM00829 Enoylreductase BF35_2008 SM00382 ATPases associated with a variety of cellular activities BF35_2011 SM00354 helix_turn _helix lactose operon repressor BF35_2013 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_2015 SM00382 ATPases associated with a variety of cellular activities BF35_2016 SM00382 ATPases associated with a variety of cellular activities BF35_2024 SM00448 cheY-homologous receiver domain BF35_2024 SM00862 Transcriptional regulatory protein, C terminal BF35_2025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2025 SM00387 Histidine kinase-like ATPases BF35_2025 SM00388 His Kinase A (phosphoacceptor) domain BF35_2035 SM00062 Bacterial periplasmic substrate-binding proteins BF35_2035 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF35_2036 SM00382 ATPases associated with a variety of cellular activities BF35_2044 SM00642 Alpha-amylase domain BF35_2046 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_2046 SM00866 BF35_2046 BF35_2048 SM00052 Putative diguanylate phosphodiesterase BF35_2048 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF35_2048 SM00267 diguanylate cyclase BF35_2051 SM00155 Phospholipase D. Active site motifs. BF35_2052 SM00382 ATPases associated with a variety of cellular activities BF35_2059 SM00382 ATPases associated with a variety of cellular activities BF35_206 SM00422 helix_turn_helix, mercury resistance BF35_206 SM00871 Bacterial transcription activator, effector binding domain BF35_2065 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_2068 SM01091 Transporter associated domain BF35_2078 SM00028 Tetratricopeptide repeats BF35_2078 SM00530 Helix-turn-helix XRE-family like proteins BF35_2081 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_2083 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF35_2083 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF35_2086 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF35_2086 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF35_2090 SM00448 cheY-homologous receiver domain BF35_2090 SM00862 Transcriptional regulatory protein, C terminal BF35_2091 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2091 SM00387 Histidine kinase-like ATPases BF35_2091 SM00388 His Kinase A (phosphoacceptor) domain BF35_2093 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_2096 SM00919 Malic enzyme, NAD binding domain BF35_2096 SM01274 BF35_2096 BF35_2098 SM00448 cheY-homologous receiver domain BF35_2099 SM00387 Histidine kinase-like ATPases BF35_210 SM00382 ATPases associated with a variety of cellular activities BF35_2100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_2100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2103 SM00387 Histidine kinase-like ATPases BF35_2103 SM00388 His Kinase A (phosphoacceptor) domain BF35_2104 SM00448 cheY-homologous receiver domain BF35_2104 SM00862 Transcriptional regulatory protein, C terminal BF35_2106 SM00248 ankyrin repeats BF35_2110 SM00448 cheY-homologous receiver domain BF35_2111 SM00091 PAS domain BF35_2111 SM00387 Histidine kinase-like ATPases BF35_2112 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_2113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2114 SM00244 prohibitin homologues BF35_2116 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF35_2119 SM00365 Leucine-rich repeat, SDS22-like subfamily BF35_2119 SM00725 NEAr Transporter domain BF35_2121 SM00763 PrkA AAA domain BF35_2123 SM00052 Putative diguanylate phosphodiesterase BF35_2123 SM00091 PAS domain BF35_2123 SM00267 diguanylate cyclase BF35_2126 SM00567 E-Z type HEAT repeats BF35_2160 SM00382 ATPases associated with a variety of cellular activities BF35_2164 SM00382 ATPases associated with a variety of cellular activities BF35_2169 SM00478 endonuclease III BF35_2169 SM00525 BF35_2169 BF35_2185 SM00984 UDP binding domain BF35_2196 SM00530 Helix-turn-helix XRE-family like proteins BF35_220 SM00448 cheY-homologous receiver domain BF35_220 SM00862 Transcriptional regulatory protein, C terminal BF35_2200 SM00382 ATPases associated with a variety of cellular activities BF35_2204 SM00478 endonuclease III BF35_221 SM00387 Histidine kinase-like ATPases BF35_221 SM00388 His Kinase A (phosphoacceptor) domain BF35_2223 SM00226 Low molecular weight phosphatase family BF35_2225 SM00831 Cation transporter/ATPase, N-terminus BF35_2234 SM00946 Prolyl-tRNA synthetase, C-terminal BF35_2238 SM00530 Helix-turn-helix XRE-family like proteins BF35_2245 SM00060 Fibronectin type 3 domain BF35_2245 SM00636 BF35_2245 BF35_2245 SM00637 BF35_2245 BF35_2246 SM00382 ATPases associated with a variety of cellular activities BF35_2248 SM00382 ATPases associated with a variety of cellular activities BF35_2252 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_2252 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2256 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF35_2256 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF35_2256 SM00493 BF35_2256 BF35_2260 SM00642 Alpha-amylase domain BF35_2263 SM00100 Cyclic nucleotide-monophosphate binding domain BF35_2263 SM00419 helix_turn_helix, cAMP Regulatory protein BF35_2269 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_2269 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2270 SM00382 ATPases associated with a variety of cellular activities BF35_2271 SM00062 Bacterial periplasmic substrate-binding proteins BF35_2271 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF35_2291 SM01007 Class II Aldolase and Adducin N-terminal domain BF35_2300 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF35_2304 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF35_2304 SM00387 Histidine kinase-like ATPases BF35_2304 SM00388 His Kinase A (phosphoacceptor) domain BF35_2313 SM00382 ATPases associated with a variety of cellular activities BF35_2316 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF35_2317 SM00845 GatB domain BF35_2321 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_2327 SM00382 ATPases associated with a variety of cellular activities BF35_2327 SM00930 BF35_2327 BF35_233 SM00878 Biotin carboxylase C-terminal domain BF35_2333 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF35_2333 SM00292 breast cancer carboxy-terminal domain BF35_2333 SM00532 Ligase N family BF35_2337 SM00244 prohibitin homologues BF35_2339 SM01209 BF35_2339 BF35_2339 SM01210 BF35_2339 BF35_2340 SM00798 AICARFT/IMPCHase bienzyme BF35_2340 SM00851 MGS-like domain BF35_2345 SM01211 BF35_2345 BF35_2348 SM00998 Adenylosuccinate lyase C-terminus BF35_2350 SM01001 AIR carboxylase BF35_2362 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_2384 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2384 SM00387 Histidine kinase-like ATPases BF35_2384 SM00388 His Kinase A (phosphoacceptor) domain BF35_2385 SM00448 cheY-homologous receiver domain BF35_2385 SM00862 Transcriptional regulatory protein, C terminal BF35_2389 SM00883 Chaperonin 10 Kd subunit BF35_239 SM00382 ATPases associated with a variety of cellular activities BF35_2392 SM00881 CoA binding domain BF35_2393 SM00382 ATPases associated with a variety of cellular activities BF35_241 SM00450 Rhodanese Homology Domain BF35_241 SM00849 Metallo-beta-lactamase superfamily BF35_2415 SM00731 SprT homologues. BF35_2416 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_2416 SM00732 Likely ribonuclease with RNase H fold. BF35_2419 SM01005 Alanine racemase, C-terminal domain BF35_2424 SM00487 DEAD-like helicases superfamily BF35_2424 SM00490 helicase superfamily c-terminal domain BF35_2438 SM00382 ATPases associated with a variety of cellular activities BF35_2439 SM00382 ATPases associated with a variety of cellular activities BF35_2444 SM00382 ATPases associated with a variety of cellular activities BF35_2455 SM00354 helix_turn _helix lactose operon repressor BF35_2457 SM00563 Phosphate acyltransferases BF35_247 SM00387 Histidine kinase-like ATPases BF35_247 SM00388 His Kinase A (phosphoacceptor) domain BF35_2475 SM00382 ATPases associated with a variety of cellular activities BF35_2476 SM00382 ATPases associated with a variety of cellular activities BF35_248 SM00448 cheY-homologous receiver domain BF35_248 SM00862 Transcriptional regulatory protein, C terminal BF35_2486 SM00829 Enoylreductase BF35_2492 SM01350 BF35_2492 BF35_2495 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_2495 SM00895 BF35_2495 BF35_25 SM00465 GIY-YIG type nucleases (URI domain) BF35_2520 SM01251 BF35_2520 BF35_2523 SM00646 BF35_2523 BF35_2529 SM00382 ATPases associated with a variety of cellular activities BF35_2530 SM00382 ATPases associated with a variety of cellular activities BF35_2532 SM00662 RNA polymerases D BF35_2536 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_2548 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF35_2549 SM01374 BF35_2549 BF35_2553 SM00322 K homology RNA-binding domain BF35_2556 SM01382 BF35_2556 BF35_2556 SM01383 BF35_2556 BF35_256 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_256 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_256 SM00319 Homologues of the ligand binding domain of Tar BF35_2560 SM01403 BF35_2560 BF35_2562 SM00838 Elongation factor G C-terminus BF35_2562 SM00889 Elongation factor G, domain IV BF35_2566 SM00663 RNA polymerase I subunit A N-terminus BF35_2572 SM00649 Ribosomal protein L11/L12 BF35_2573 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF35_2575 SM00421 helix_turn_helix, Lux Regulon BF35_2577 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF35_2578 SM00535 Ribonuclease III family BF35_2579 SM00840 BF35_2579 BF35_2585 SM00670 Large family of predicted nucleotide-binding domains BF35_2587 SM00382 ATPases associated with a variety of cellular activities BF35_2588 SM00382 ATPases associated with a variety of cellular activities BF35_2588 SM01086 C-terminal, D2-small domain, of ClpB protein BF35_259 SM00052 Putative diguanylate phosphodiesterase BF35_259 SM00091 PAS domain BF35_259 SM00267 diguanylate cyclase BF35_2611 SM00530 Helix-turn-helix XRE-family like proteins BF35_2613 SM00905 Dihydroneopterin aldolase BF35_2621 SM00382 ATPases associated with a variety of cellular activities BF35_2623 SM00977 TilS substrate C-terminal domain BF35_2624 SM00331 Sigma factor PP2C-like phosphatases BF35_2624 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF35_2627 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_2631 SM00363 S4 RNA-binding domain BF35_2634 SM00966 SpoVT / AbrB like domain BF35_2635 SM00487 DEAD-like helicases superfamily BF35_2635 SM00490 helicase superfamily c-terminal domain BF35_2635 SM00982 BF35_2635 BF35_2635 SM01058 CarD-like/TRCF domain BF35_2638 SM01400 BF35_2638 BF35_2647 SM00650 Ribosomal RNA adenine dimethylases BF35_2648 SM00493 BF35_2648 BF35_265 SM00421 helix_turn_helix, Lux Regulon BF35_265 SM00448 cheY-homologous receiver domain BF35_2651 SM00966 SpoVT / AbrB like domain BF35_266 SM00387 Histidine kinase-like ATPases BF35_2669 SM00493 BF35_2669 BF35_2671 SM00382 ATPases associated with a variety of cellular activities BF35_2681 SM00936 Penicillin-binding protein 5, C-terminal domain BF35_2682 SM00116 Domain in cystathionine beta-synthase and other proteins. BF35_2682 SM01240 BF35_2682 BF35_2689 SM00434 DNA Topoisomerase IV BF35_2690 SM00387 Histidine kinase-like ATPases BF35_2690 SM00433 TopoisomeraseII BF35_2693 SM00480 DNA polymerase III beta subunit BF35_2694 SM00382 ATPases associated with a variety of cellular activities BF35_2694 SM00760 Bacterial dnaA protein helix-turn-helix domain BF35_2698 SM00393 Putative single-stranded nucleic acids-binding domain BF35_2698 SM01245 BF35_2698 BF35_2700 SM01228 BF35_2700 BF35_2702 SM00470 ParB-like nuclease domain BF35_2704 SM00470 ParB-like nuclease domain BF35_2713 SM00267 diguanylate cyclase BF35_2716 SM00788 Adenylosuccinate synthetase BF35_2721 SM00448 cheY-homologous receiver domain BF35_2721 SM00862 Transcriptional regulatory protein, C terminal BF35_2722 SM00091 PAS domain BF35_2722 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2722 SM00387 Histidine kinase-like ATPases BF35_2722 SM00388 His Kinase A (phosphoacceptor) domain BF35_2725 SM00849 Metallo-beta-lactamase superfamily BF35_2726 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF35_273 SM00849 Metallo-beta-lactamase superfamily BF35_2731 SM01240 BF35_2731 BF35_2733 SM00487 DEAD-like helicases superfamily BF35_2733 SM00490 helicase superfamily c-terminal domain BF35_2744 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF35_2744 SM00387 Histidine kinase-like ATPases BF35_2745 SM00448 cheY-homologous receiver domain BF35_2745 SM00850 LytTr DNA-binding domain BF35_2756 SM00382 ATPases associated with a variety of cellular activities BF35_2761 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_2767 SM00448 cheY-homologous receiver domain BF35_2767 SM00850 LytTr DNA-binding domain BF35_277 SM00257 Lysin motif BF35_2770 SM00267 diguanylate cyclase BF35_2772 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF35_2773 SM00421 helix_turn_helix, Lux Regulon BF35_2773 SM00448 cheY-homologous receiver domain BF35_2775 SM00100 Cyclic nucleotide-monophosphate binding domain BF35_2782 SM00354 helix_turn _helix lactose operon repressor BF35_2784 SM00382 ATPases associated with a variety of cellular activities BF35_2786 SM00986 Uracil DNA glycosylase superfamily BF35_2786 SM00987 UreE urease accessory protein, C-terminal domain BF35_2795 SM00936 Penicillin-binding protein 5, C-terminal domain BF35_2804 SM00382 ATPases associated with a variety of cellular activities BF35_2806 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_2812 SM00422 helix_turn_helix, mercury resistance BF35_2820 SM00836 DALR anticodon binding domain BF35_2820 SM01016 Arginyl tRNA synthetase N terminal dom BF35_2828 SM00382 ATPases associated with a variety of cellular activities BF35_2831 SM00421 helix_turn_helix, Lux Regulon BF35_2831 SM00448 cheY-homologous receiver domain BF35_2833 SM00530 Helix-turn-helix XRE-family like proteins BF35_2835 SM00052 Putative diguanylate phosphodiesterase BF35_2835 SM00267 diguanylate cyclase BF35_2837 SM00155 Phospholipase D. Active site motifs. BF35_2848 SM00448 cheY-homologous receiver domain BF35_2852 SM00357 Cold shock protein domain BF35_2852 SM00382 ATPases associated with a variety of cellular activities BF35_2852 SM00959 Rho termination factor, N-terminal domain BF35_2855 SM00937 BF35_2855 BF35_2862 SM00903 Flavin reductase like domain BF35_2865 SM00226 Low molecular weight phosphatase family BF35_2878 SM00382 ATPases associated with a variety of cellular activities BF35_2882 SM00052 Putative diguanylate phosphodiesterase BF35_2882 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF35_2882 SM00091 PAS domain BF35_2882 SM00267 diguanylate cyclase BF35_289 SM00354 helix_turn _helix lactose operon repressor BF35_2898 SM00850 LytTr DNA-binding domain BF35_2899 SM00382 ATPases associated with a variety of cellular activities BF35_290 SM00014 Acid phosphatase homologues BF35_2911 SM00382 ATPases associated with a variety of cellular activities BF35_2918 SM00448 cheY-homologous receiver domain BF35_2918 SM00862 Transcriptional regulatory protein, C terminal BF35_2919 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_2919 SM00387 Histidine kinase-like ATPases BF35_2919 SM00388 His Kinase A (phosphoacceptor) domain BF35_2924 SM00382 ATPases associated with a variety of cellular activities BF35_2933 SM00487 DEAD-like helicases superfamily BF35_2933 SM00490 helicase superfamily c-terminal domain BF35_2939 SM00287 Bacterial SH3 domain homologues BF35_2945 SM00287 Bacterial SH3 domain homologues BF35_2975 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF35_2976 SM00382 ATPases associated with a variety of cellular activities BF35_2979 SM00984 UDP binding domain BF35_2986 SM00487 DEAD-like helicases superfamily BF35_2986 SM00490 helicase superfamily c-terminal domain BF35_2988 SM00357 Cold shock protein domain BF35_2990 SM00957 SecA DEAD-like domain BF35_2990 SM00958 SecA preprotein cross-linking domain BF35_2991 SM00937 BF35_2991 BF35_2993 SM00382 ATPases associated with a variety of cellular activities BF35_2995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF35_2995 SM00245 tail specific protease BF35_2997 SM00382 ATPases associated with a variety of cellular activities BF35_2999 SM00382 ATPases associated with a variety of cellular activities BF35_3 SM00829 Enoylreductase BF35_3001 SM00422 helix_turn_helix, mercury resistance BF35_3004 SM00530 Helix-turn-helix XRE-family like proteins BF35_3008 SM00422 helix_turn_helix, mercury resistance BF35_3011 SM00487 DEAD-like helicases superfamily BF35_3011 SM00490 helicase superfamily c-terminal domain BF35_3019 SM00028 Tetratricopeptide repeats BF35_3039 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF35_3043 SM01192 BF35_3043 BF35_3043 SM01193 BF35_3043 BF35_3049 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_3049 SM00357 Cold shock protein domain BF35_3049 SM00955 BF35_3049 BF35_305 SM00855 Phosphoglycerate mutase family BF35_3052 SM00448 cheY-homologous receiver domain BF35_3052 SM00862 Transcriptional regulatory protein, C terminal BF35_3056 SM00382 ATPases associated with a variety of cellular activities BF35_3059 SM00382 ATPases associated with a variety of cellular activities BF35_306 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_3066 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_3067 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF35_3069 SM00363 S4 RNA-binding domain BF35_3077 SM01276 BF35_3077 BF35_3096 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_3100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_3100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_3101 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_3101 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_3105 SM00387 Histidine kinase-like ATPases BF35_3105 SM00388 His Kinase A (phosphoacceptor) domain BF35_3106 SM00448 cheY-homologous receiver domain BF35_3106 SM00862 Transcriptional regulatory protein, C terminal BF35_311 SM00382 ATPases associated with a variety of cellular activities BF35_3110 SM00530 Helix-turn-helix XRE-family like proteins BF35_3126 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_3126 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_3136 SM00849 Metallo-beta-lactamase superfamily BF35_3155 SM00493 BF35_3155 BF35_3158 SM00382 ATPases associated with a variety of cellular activities BF35_3158 SM00930 BF35_3158 BF35_3162 SM00382 ATPases associated with a variety of cellular activities BF35_3173 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_3175 SM00855 Phosphoglycerate mutase family BF35_3178 SM00422 helix_turn_helix, mercury resistance BF35_318 SM00487 DEAD-like helicases superfamily BF35_318 SM00490 helicase superfamily c-terminal domain BF35_3199 SM00382 ATPases associated with a variety of cellular activities BF35_3210 SM00871 Bacterial transcription activator, effector binding domain BF35_322 SM00849 Metallo-beta-lactamase superfamily BF35_3227 SM00479 BF35_3227 BF35_3228 SM01298 BF35_3228 BF35_3235 SM00344 helix_turn_helix ASNC type BF35_3237 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_326 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_3274 SM00642 Alpha-amylase domain BF35_3281 SM00422 helix_turn_helix, mercury resistance BF35_3283 SM00357 Cold shock protein domain BF35_329 SM01207 BF35_329 BF35_3291 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF35_3292 SM00448 cheY-homologous receiver domain BF35_3292 SM00862 Transcriptional regulatory protein, C terminal BF35_3293 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_3293 SM00387 Histidine kinase-like ATPases BF35_3293 SM00388 His Kinase A (phosphoacceptor) domain BF35_3299 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_3299 SM00866 BF35_3299 BF35_3303 SM00382 ATPases associated with a variety of cellular activities BF35_3306 SM00387 Histidine kinase-like ATPases BF35_3307 SM00448 cheY-homologous receiver domain BF35_3307 SM00862 Transcriptional regulatory protein, C terminal BF35_3308 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_3310 SM00342 helix_turn_helix, arabinose operon control protein BF35_3310 SM00871 Bacterial transcription activator, effector binding domain BF35_3311 SM00382 ATPases associated with a variety of cellular activities BF35_3314 SM00342 helix_turn_helix, arabinose operon control protein BF35_3325 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF35_3331 SM00448 cheY-homologous receiver domain BF35_3331 SM00862 Transcriptional regulatory protein, C terminal BF35_3332 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_3332 SM00387 Histidine kinase-like ATPases BF35_3332 SM00388 His Kinase A (phosphoacceptor) domain BF35_3334 SM00899 BF35_3334 BF35_3349 SM00894 Excalibur calcium-binding domain BF35_3353 SM01234 BF35_3353 BF35_3354 SM00947 Carbonic anhydrase BF35_3365 SM00382 ATPases associated with a variety of cellular activities BF35_3371 SM00387 Histidine kinase-like ATPases BF35_3371 SM00388 His Kinase A (phosphoacceptor) domain BF35_3372 SM00387 Histidine kinase-like ATPases BF35_3389 SM00852 Probable molybdopterin binding domain BF35_3392 SM00014 Acid phosphatase homologues BF35_3401 SM00382 ATPases associated with a variety of cellular activities BF35_3403 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_3407 SM00382 ATPases associated with a variety of cellular activities BF35_3422 SM00450 Rhodanese Homology Domain BF35_3426 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_3429 SM00852 Probable molybdopterin binding domain BF35_343 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_3435 SM00822 BF35_3435 BF35_3436 SM01058 CarD-like/TRCF domain BF35_344 SM00835 Cupin BF35_3441 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_3445 SM00363 S4 RNA-binding domain BF35_3446 SM00420 helix_turn_helix, Deoxyribose operon repressor BF35_3449 SM00642 Alpha-amylase domain BF35_3453 SM00849 Metallo-beta-lactamase superfamily BF35_3461 SM00646 BF35_3461 BF35_3462 SM00843 BF35_3462 BF35_3467 SM00422 helix_turn_helix, mercury resistance BF35_3477 SM00354 helix_turn _helix lactose operon repressor BF35_3484 SM00248 ankyrin repeats BF35_3485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_3485 SM00387 Histidine kinase-like ATPases BF35_3485 SM00388 His Kinase A (phosphoacceptor) domain BF35_3486 SM00448 cheY-homologous receiver domain BF35_3486 SM00862 Transcriptional regulatory protein, C terminal BF35_3490 SM00116 Domain in cystathionine beta-synthase and other proteins. BF35_3496 SM00363 S4 RNA-binding domain BF35_3499 SM00363 S4 RNA-binding domain BF35_3499 SM01390 BF35_3499 BF35_350 SM00530 Helix-turn-helix XRE-family like proteins BF35_3507 SM00981 BF35_3507 BF35_352 SM00646 BF35_352 BF35_3531 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF35_3531 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF35_3534 SM00530 Helix-turn-helix XRE-family like proteins BF35_354 SM00382 ATPases associated with a variety of cellular activities BF35_3546 SM00849 Metallo-beta-lactamase superfamily BF35_3548 SM00116 Domain in cystathionine beta-synthase and other proteins. BF35_355 SM00382 ATPases associated with a variety of cellular activities BF35_3554 SM00481 DNA polymerase alpha chain like domain BF35_3555 SM00919 Malic enzyme, NAD binding domain BF35_3555 SM01274 BF35_3555 BF35_3556 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_3565 SM01329 BF35_3565 BF35_3570 SM00448 cheY-homologous receiver domain BF35_3570 SM00862 Transcriptional regulatory protein, C terminal BF35_3571 SM00091 PAS domain BF35_3571 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_3571 SM00387 Histidine kinase-like ATPases BF35_3571 SM00388 His Kinase A (phosphoacceptor) domain BF35_3572 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF35_3572 SM00474 3'-5' exonuclease BF35_3572 SM00475 5'-3' exonuclease BF35_3572 SM00482 DNA polymerase A domain BF35_3573 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF35_3573 SM01232 BF35_3573 BF35_3576 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF35_3580 SM00382 ATPases associated with a variety of cellular activities BF35_3582 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF35_3594 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF35_3596 SM00873 B3/4 domain BF35_3596 SM00874 tRNA synthetase B5 domain BF35_3596 SM00896 Ferredoxin-fold anticodon binding domain BF35_3604 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF35_3604 SM00481 DNA polymerase alpha chain like domain BF35_3604 SM00483 DNA polymerase X family BF35_3605 SM00463 Small MutS-related domain BF35_3605 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF35_3605 SM00534 ATPase domain of DNA mismatch repair MUTS family BF35_3607 SM00363 S4 RNA-binding domain BF35_3609 SM00725 NEAr Transporter domain BF35_3610 SM00725 NEAr Transporter domain BF35_3611 SM00725 NEAr Transporter domain BF35_3614 SM00382 ATPases associated with a variety of cellular activities BF35_3617 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF35_362 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF35_3620 SM00448 cheY-homologous receiver domain BF35_3620 SM00862 Transcriptional regulatory protein, C terminal BF35_3621 SM00387 Histidine kinase-like ATPases BF35_3621 SM00388 His Kinase A (phosphoacceptor) domain BF35_3622 SM00382 ATPases associated with a variety of cellular activities BF35_3633 SM00893 Electron transfer flavoprotein domain BF35_3634 SM00893 Electron transfer flavoprotein domain BF35_3636 SM00465 GIY-YIG type nucleases (URI domain) BF35_3646 SM00382 ATPases associated with a variety of cellular activities BF35_3651 SM00530 Helix-turn-helix XRE-family like proteins BF35_3655 SM00421 helix_turn_helix, Lux Regulon BF35_3662 SM00909 Sporulation and spore germination BF35_3676 SM00382 ATPases associated with a variety of cellular activities BF35_3676 SM00994 ClpX C4-type zinc finger BF35_3676 SM01086 C-terminal, D2-small domain, of ClpB protein BF35_3677 SM00382 ATPases associated with a variety of cellular activities BF35_3678 SM00382 ATPases associated with a variety of cellular activities BF35_3678 SM00464 Found in ATP-dependent protease La (LON) BF35_3681 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_3686 SM01004 Delta-aminolevulinic acid dehydratase BF35_3688 SM00257 Lysin motif BF35_369 SM00357 Cold shock protein domain BF35_3696 SM00507 HNH nucleases BF35_3709 SM01317 BF35_3709 BF35_3711 SM00448 cheY-homologous receiver domain BF35_3711 SM00862 Transcriptional regulatory protein, C terminal BF35_3712 SM00387 Histidine kinase-like ATPases BF35_3713 SM00382 ATPases associated with a variety of cellular activities BF35_3723 SM00257 Lysin motif BF35_3726 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_3730 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF35_3731 SM00382 ATPases associated with a variety of cellular activities BF35_3735 SM01323 BF35_3735 BF35_3744 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_3744 SM00954 Region found in RelA / SpoT proteins BF35_3751 SM00382 ATPases associated with a variety of cellular activities BF35_3755 SM00028 Tetratricopeptide repeats BF35_376 SM00530 Helix-turn-helix XRE-family like proteins BF35_3762 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF35_3764 SM00732 Likely ribonuclease with RNase H fold. BF35_3783 SM00382 ATPases associated with a variety of cellular activities BF35_3789 SM00530 Helix-turn-helix XRE-family like proteins BF35_3798 SM00855 Phosphoglycerate mutase family BF35_3803 SM00098 Alkaline phosphatase homologues BF35_3805 SM00954 Region found in RelA / SpoT proteins BF35_381 SM01059 Chloramphenicol acetyltransferase BF35_3816 SM01103 BF35_3816 BF35_3818 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_3822 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF35_3824 SM00849 Metallo-beta-lactamase superfamily BF35_3830 SM00838 Elongation factor G C-terminus BF35_3832 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_3836 SM00271 DnaJ molecular chaperone homology domain BF35_3839 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_3845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_385 SM00849 Metallo-beta-lactamase superfamily BF35_3852 SM00116 Domain in cystathionine beta-synthase and other proteins. BF35_3854 SM00400 zinc finger BF35_3854 SM00493 BF35_3854 BF35_3854 SM00766 DNA primase DnaG DnaB-binding BF35_3861 SM00487 DEAD-like helicases superfamily BF35_3861 SM00490 helicase superfamily c-terminal domain BF35_3862 SM00518 AP endonuclease family 2 BF35_3865 SM00382 ATPases associated with a variety of cellular activities BF35_3878 SM00382 ATPases associated with a variety of cellular activities BF35_388 SM00100 Cyclic nucleotide-monophosphate binding domain BF35_3886 SM00849 Metallo-beta-lactamase superfamily BF35_3888 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_3893 SM01018 B12 binding domain BF35_3904 SM00857 Resolvase, N terminal domain BF35_3906 SM00857 Resolvase, N terminal domain BF35_3924 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF35_393 SM00849 Metallo-beta-lactamase superfamily BF35_3931 SM00487 DEAD-like helicases superfamily BF35_3931 SM00490 helicase superfamily c-terminal domain BF35_3937 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_3938 SM00382 ATPases associated with a variety of cellular activities BF35_3948 SM00354 helix_turn _helix lactose operon repressor BF35_3950 SM00450 Rhodanese Homology Domain BF35_3956 SM00529 Helix-turn-helix diphteria tox regulatory element BF35_3963 SM00841 Elongation factor P, C-terminal BF35_3963 SM01185 BF35_3963 BF35_3967 SM00382 ATPases associated with a variety of cellular activities BF35_3977 SM00878 Biotin carboxylase C-terminal domain BF35_3984 SM00861 Transketolase, pyrimidine binding domain BF35_3985 SM00363 S4 RNA-binding domain BF35_3988 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF35_3989 SM00448 cheY-homologous receiver domain BF35_3992 SM00530 Helix-turn-helix XRE-family like proteins BF35_4 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_4011 SM00091 PAS domain BF35_4011 SM00382 ATPases associated with a variety of cellular activities BF35_4013 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF35_4017 SM00861 Transketolase, pyrimidine binding domain BF35_402 SM00382 ATPases associated with a variety of cellular activities BF35_4024 SM00062 Bacterial periplasmic substrate-binding proteins BF35_4024 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF35_4026 SM00382 ATPases associated with a variety of cellular activities BF35_4034 SM00849 Metallo-beta-lactamase superfamily BF35_4038 SM00849 Metallo-beta-lactamase superfamily BF35_404 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF35_4041 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF35_4048 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_405 SM00363 S4 RNA-binding domain BF35_4058 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_4058 SM00876 Biotin and Thiamin Synthesis associated domain BF35_4064 SM00704 CDGSH-type zinc finger. Function unknown. BF35_4068 SM00354 helix_turn _helix lactose operon repressor BF35_4087 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF35_4091 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_4095 SM00382 ATPases associated with a variety of cellular activities BF35_4096 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_4097 SM00936 Penicillin-binding protein 5, C-terminal domain BF35_4099 SM00387 Histidine kinase-like ATPases BF35_4118 SM00849 Metallo-beta-lactamase superfamily BF35_4121 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_4121 SM00866 BF35_4121 BF35_4123 SM01061 CAT RNA binding domain BF35_413 SM00411 bacterial (prokaryotic) histone like domain BF35_4130 SM00267 diguanylate cyclase BF35_4136 SM01007 Class II Aldolase and Adducin N-terminal domain BF35_4153 SM00382 ATPases associated with a variety of cellular activities BF35_4160 SM00382 ATPases associated with a variety of cellular activities BF35_4161 SM00642 Alpha-amylase domain BF35_4162 SM00642 Alpha-amylase domain BF35_4166 SM00354 helix_turn _helix lactose operon repressor BF35_4169 SM00387 Histidine kinase-like ATPases BF35_4169 SM00388 His Kinase A (phosphoacceptor) domain BF35_417 SM00923 MbtH-like protein BF35_418 SM00823 Phosphopantetheine attachment site BF35_418 SM00824 Thioesterase BF35_4186 SM00052 Putative diguanylate phosphodiesterase BF35_4200 SM00849 Metallo-beta-lactamase superfamily BF35_4206 SM00861 Transketolase, pyrimidine binding domain BF35_4222 SM00838 Elongation factor G C-terminus BF35_4227 SM00670 Large family of predicted nucleotide-binding domains BF35_4231 SM00878 Biotin carboxylase C-terminal domain BF35_4243 SM00855 Phosphoglycerate mutase family BF35_425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_4251 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF35_4255 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF35_4261 SM00740 BF35_4261 BF35_4263 SM00740 BF35_4263 BF35_4271 SM00842 Cell division protein FtsA BF35_4272 SM00864 Tubulin/FtsZ family, GTPase domain BF35_4272 SM00865 Tubulin/FtsZ family, C-terminal domain BF35_4281 SM00363 S4 RNA-binding domain BF35_4286 SM00363 S4 RNA-binding domain BF35_4291 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF35_4292 SM00851 MGS-like domain BF35_4292 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF35_4292 SM01209 BF35_4292 BF35_4295 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF35_4306 SM00831 Cation transporter/ATPase, N-terminus BF35_4309 SM00072 Guanylate kinase homologues. BF35_4310 SM01409 BF35_4310 BF35_4312 SM00487 DEAD-like helicases superfamily BF35_4312 SM00490 helicase superfamily c-terminal domain BF35_4317 SM00331 Sigma factor PP2C-like phosphatases BF35_4317 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF35_4318 SM00220 Serine/Threonine protein kinases, catalytic domain BF35_4318 SM00740 BF35_4318 BF35_4321 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF35_4324 SM01120 BF35_4324 BF35_4324 SM01121 BF35_4324 BF35_4325 SM00487 DEAD-like helicases superfamily BF35_4325 SM00490 helicase superfamily c-terminal domain BF35_4328 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF35_4329 SM00822 BF35_4329 BF35_4331 SM00358 Double-stranded RNA binding motif BF35_4331 SM00535 Ribonuclease III family BF35_4332 SM00968 SMC proteins Flexible Hinge Domain BF35_4333 SM00382 ATPases associated with a variety of cellular activities BF35_4333 SM00962 SRP54-type protein, GTPase domain BF35_4333 SM00963 SRP54-type protein, helical bundle domain BF35_4335 SM00382 ATPases associated with a variety of cellular activities BF35_4335 SM00962 SRP54-type protein, GTPase domain BF35_4335 SM00963 SRP54-type protein, helical bundle domain BF35_4345 SM00881 CoA binding domain BF35_4347 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF35_4347 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF35_4347 SM00493 BF35_4347 BF35_4351 SM00382 ATPases associated with a variety of cellular activities BF35_4351 SM01086 C-terminal, D2-small domain, of ClpB protein BF35_4360 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF35_4362 SM00479 BF35_4362 BF35_4362 SM00481 DNA polymerase alpha chain like domain BF35_4364 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_4364 SM00322 K homology RNA-binding domain BF35_4371 SM00904 Riboflavin kinase BF35_4372 SM01387 BF35_4372 BF35_4373 SM00316 Ribosomal protein S1-like RNA-binding domain BF35_4373 SM00322 K homology RNA-binding domain BF35_4379 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF35_4381 SM01130 BF35_4381 BF35_4382 SM00849 Metallo-beta-lactamase superfamily BF35_4385 SM00382 ATPases associated with a variety of cellular activities BF35_4385 SM00843 BF35_4385 BF35_4387 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_4387 SM00866 BF35_4387 BF35_4389 SM00382 ATPases associated with a variety of cellular activities BF35_4399 SM00852 Probable molybdopterin binding domain BF35_4400 SM00382 ATPases associated with a variety of cellular activities BF35_4401 SM00322 K homology RNA-binding domain BF35_4401 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_4407 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_4410 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF35_4410 SM00534 ATPase domain of DNA mismatch repair MUTS family BF35_4411 SM00853 MutL C terminal dimerisation domain BF35_4411 SM01340 BF35_4411 BF35_4417 SM00257 Lysin motif BF35_4419 SM00148 Phospholipase C, catalytic domain (part); domain X BF35_4421 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_4431 SM00052 Putative diguanylate phosphodiesterase BF35_4431 SM00091 PAS domain BF35_4431 SM00267 diguanylate cyclase BF35_4437 SM00478 endonuclease III BF35_4439 SM00342 helix_turn_helix, arabinose operon control protein BF35_4444 SM00382 ATPases associated with a variety of cellular activities BF35_4451 SM00411 bacterial (prokaryotic) histone like domain BF35_4454 SM00636 BF35_4454 BF35_4460 SM00420 helix_turn_helix, Deoxyribose operon repressor BF35_4460 SM01134 BF35_4460 BF35_4463 SM00287 Bacterial SH3 domain homologues BF35_4469 SM00382 ATPases associated with a variety of cellular activities BF35_4474 SM00422 helix_turn_helix, mercury resistance BF35_4475 SM01230 BF35_4475 BF35_4485 SM00857 Resolvase, N terminal domain BF35_4488 SM00062 Bacterial periplasmic substrate-binding proteins BF35_4489 SM00382 ATPases associated with a variety of cellular activities BF35_4492 SM00861 Transketolase, pyrimidine binding domain BF35_4495 SM00382 ATPases associated with a variety of cellular activities BF35_4496 SM00382 ATPases associated with a variety of cellular activities BF35_4499 SM00644 BF35_4499 BF35_4508 SM00382 ATPases associated with a variety of cellular activities BF35_4526 SM01058 CarD-like/TRCF domain BF35_4533 SM00091 PAS domain BF35_4533 SM00387 Histidine kinase-like ATPases BF35_4533 SM00388 His Kinase A (phosphoacceptor) domain BF35_4536 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF35_4537 SM00644 BF35_4537 BF35_4537 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF35_4545 SM00530 Helix-turn-helix XRE-family like proteins BF35_4546 SM00382 ATPases associated with a variety of cellular activities BF35_4554 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF35_4563 SM00382 ATPases associated with a variety of cellular activities BF35_4566 SM00479 BF35_4566 BF35_4570 SM00257 Lysin motif BF35_4570 SM00636 BF35_4570 BF35_4574 SM01207 BF35_4574 BF35_4577 SM00448 cheY-homologous receiver domain BF35_4577 SM00862 Transcriptional regulatory protein, C terminal BF35_4578 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF35_4579 SM00881 CoA binding domain BF35_4580 SM00387 Histidine kinase-like ATPases BF35_4580 SM00433 TopoisomeraseII BF35_4581 SM00434 DNA Topoisomerase IV BF35_4584 SM00420 helix_turn_helix, Deoxyribose operon repressor BF35_4586 SM00382 ATPases associated with a variety of cellular activities BF35_46 SM00480 DNA polymerase III beta subunit BF35_4608 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF35_4608 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF35_461 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF35_4612 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_4615 SM00852 Probable molybdopterin binding domain BF35_4626 SM00822 BF35_4626 BF35_4636 SM01022 BF35_4636 BF35_4641 SM00357 Cold shock protein domain BF35_4642 SM00479 BF35_4642 BF35_4655 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF35_4656 SM00387 Histidine kinase-like ATPases BF35_4656 SM00388 His Kinase A (phosphoacceptor) domain BF35_4659 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_4660 SM00646 BF35_4660 BF35_4666 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_4672 SM00028 Tetratricopeptide repeats BF35_4675 SM00829 Enoylreductase BF35_4676 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_4687 SM00422 helix_turn_helix, mercury resistance BF35_4687 SM00871 Bacterial transcription activator, effector binding domain BF35_4692 SM00642 Alpha-amylase domain BF35_4694 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF35_4694 SM00534 ATPase domain of DNA mismatch repair MUTS family BF35_4696 SM00855 Phosphoglycerate mutase family BF35_4698 SM00829 Enoylreductase BF35_472 SM00014 Acid phosphatase homologues BF35_4722 SM00829 Enoylreductase BF35_4726 SM00849 Metallo-beta-lactamase superfamily BF35_4739 SM00641 Glycosyl hydrolases family 25 BF35_4740 SM00849 Metallo-beta-lactamase superfamily BF35_4746 SM00382 ATPases associated with a variety of cellular activities BF35_4749 SM00420 helix_turn_helix, Deoxyribose operon repressor BF35_475 SM00219 Tyrosine kinase, catalytic domain BF35_4750 SM00871 Bacterial transcription activator, effector binding domain BF35_4756 SM00636 BF35_4756 BF35_4757 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_4758 SM00248 ankyrin repeats BF35_4772 SM00849 Metallo-beta-lactamase superfamily BF35_4776 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_4776 SM00866 BF35_4776 BF35_4780 SM00914 BF35_4780 BF35_4785 SM00829 Enoylreductase BF35_4787 SM00861 Transketolase, pyrimidine binding domain BF35_4788 SM01350 BF35_4788 BF35_4802 SM00422 helix_turn_helix, mercury resistance BF35_4803 SM01091 Transporter associated domain BF35_4820 SM00382 ATPases associated with a variety of cellular activities BF35_4822 SM01266 BF35_4822 BF35_483 SM00382 ATPases associated with a variety of cellular activities BF35_4834 SM00530 Helix-turn-helix XRE-family like proteins BF35_4837 SM00382 ATPases associated with a variety of cellular activities BF35_4850 SM00530 Helix-turn-helix XRE-family like proteins BF35_4859 SM00382 ATPases associated with a variety of cellular activities BF35_486 SM00882 Coenzyme A transferase BF35_487 SM00882 Coenzyme A transferase BF35_4871 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_4876 SM00854 Bacterial capsule synthesis protein PGA_cap BF35_4884 SM00644 BF35_4884 BF35_4887 SM00342 helix_turn_helix, arabinose operon control protein BF35_489 SM00387 Histidine kinase-like ATPases BF35_489 SM00388 His Kinase A (phosphoacceptor) domain BF35_4896 SM00344 helix_turn_helix ASNC type BF35_4906 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_4906 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_4906 SM00319 Homologues of the ligand binding domain of Tar BF35_4915 SM00028 Tetratricopeptide repeats BF35_4916 SM00354 helix_turn _helix lactose operon repressor BF35_4928 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_493 SM01091 Transporter associated domain BF35_4930 SM00448 cheY-homologous receiver domain BF35_4930 SM00862 Transcriptional regulatory protein, C terminal BF35_4931 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_4931 SM00387 Histidine kinase-like ATPases BF35_4931 SM00388 His Kinase A (phosphoacceptor) domain BF35_4933 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_4935 SM00382 ATPases associated with a variety of cellular activities BF35_4943 SM00530 Helix-turn-helix XRE-family like proteins BF35_4959 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_4965 SM00342 helix_turn_helix, arabinose operon control protein BF35_4972 SM00344 helix_turn_helix ASNC type BF35_4980 SM00421 helix_turn_helix, Lux Regulon BF35_4980 SM00448 cheY-homologous receiver domain BF35_4990 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_4993 SM00226 Low molecular weight phosphatase family BF35_501 SM00382 ATPases associated with a variety of cellular activities BF35_5024 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_5042 SM00387 Histidine kinase-like ATPases BF35_5043 SM00448 cheY-homologous receiver domain BF35_5049 SM00465 GIY-YIG type nucleases (URI domain) BF35_5050 SM00342 helix_turn_helix, arabinose operon control protein BF35_5055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF35_5055 SM00091 PAS domain BF35_5055 SM00387 Histidine kinase-like ATPases BF35_5055 SM00388 His Kinase A (phosphoacceptor) domain BF35_5059 SM00530 Helix-turn-helix XRE-family like proteins BF35_5060 SM00870 BF35_5060 BF35_5074 SM00849 Metallo-beta-lactamase superfamily BF35_5088 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_5092 SM00346 helix_turn_helix isocitrate lyase regulation BF35_5093 SM00796 Allophanate hydrolase subunit 1 BF35_5094 SM00797 Allophanate hydrolase subunit 2 BF35_5125 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_5130 SM00342 helix_turn_helix, arabinose operon control protein BF35_5130 SM00871 Bacterial transcription activator, effector binding domain BF35_5135 SM00382 ATPases associated with a variety of cellular activities BF35_5137 SM00773 Proposed nucleic acid binding domain BF35_514 SM00829 Enoylreductase BF35_5142 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_5145 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_5150 SM00382 ATPases associated with a variety of cellular activities BF35_5157 SM01060 BF35_5157 BF35_517 SM00421 helix_turn_helix, Lux Regulon BF35_517 SM00448 cheY-homologous receiver domain BF35_5177 SM00850 LytTr DNA-binding domain BF35_518 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF35_5182 SM00530 Helix-turn-helix XRE-family like proteins BF35_5184 SM00098 Alkaline phosphatase homologues BF35_5189 SM00346 helix_turn_helix isocitrate lyase regulation BF35_5192 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF35_5196 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_5203 SM01133 BF35_5203 BF35_5207 SM00382 ATPases associated with a variety of cellular activities BF35_5216 SM00287 Bacterial SH3 domain homologues BF35_5221 SM00830 Chorismate mutase type II BF35_5230 SM00382 ATPases associated with a variety of cellular activities BF35_5251 SM00028 Tetratricopeptide repeats BF35_5255 SM00382 ATPases associated with a variety of cellular activities BF35_5256 SM00062 Bacterial periplasmic substrate-binding proteins BF35_5268 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_5269 SM00382 ATPases associated with a variety of cellular activities BF35_527 SM00014 Acid phosphatase homologues BF35_5312 SM00448 cheY-homologous receiver domain BF35_5312 SM00862 Transcriptional regulatory protein, C terminal BF35_5313 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_5313 SM00387 Histidine kinase-like ATPases BF35_5313 SM00388 His Kinase A (phosphoacceptor) domain BF35_5314 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF35_5323 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF35_5327 SM00530 Helix-turn-helix XRE-family like proteins BF35_5340 SM00091 PAS domain BF35_5340 SM00382 ATPases associated with a variety of cellular activities BF35_5344 SM01130 BF35_5344 BF35_5348 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_5351 SM01131 BF35_5351 BF35_5360 SM00341 Helicase and RNase D C-terminal BF35_5360 SM00487 DEAD-like helicases superfamily BF35_5360 SM00490 helicase superfamily c-terminal domain BF35_5360 SM00956 BF35_5360 BF35_5366 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_5376 SM00849 Metallo-beta-lactamase superfamily BF35_5385 SM00060 Fibronectin type 3 domain BF35_5385 SM00495 Chitin-binding domain type 3 BF35_539 SM00563 Phosphate acyltransferases BF35_5392 SM00116 Domain in cystathionine beta-synthase and other proteins. BF35_5392 SM00382 ATPases associated with a variety of cellular activities BF35_5405 SM00861 Transketolase, pyrimidine binding domain BF35_5411 SM00420 helix_turn_helix, Deoxyribose operon repressor BF35_5411 SM01134 BF35_5411 BF35_5415 SM00382 ATPases associated with a variety of cellular activities BF35_5437 SM00382 ATPases associated with a variety of cellular activities BF35_5447 SM00530 Helix-turn-helix XRE-family like proteins BF35_5454 SM00382 ATPases associated with a variety of cellular activities BF35_5456 SM01260 BF35_5456 BF35_5457 SM00028 Tetratricopeptide repeats BF35_5457 SM00530 Helix-turn-helix XRE-family like proteins BF35_5472 SM01260 BF35_5472 BF35_552 SM00382 ATPases associated with a variety of cellular activities BF35_572 SM00248 ankyrin repeats BF35_576 SM00028 Tetratricopeptide repeats BF35_578 SM00382 ATPases associated with a variety of cellular activities BF35_581 SM00327 von Willebrand factor (vWF) type A domain BF35_59 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_592 SM00836 DALR anticodon binding domain BF35_592 SM01016 Arginyl tRNA synthetase N terminal dom BF35_596 SM00567 E-Z type HEAT repeats BF35_596 SM00932 Scaffold protein Nfu/NifU N terminal BF35_600 SM00382 ATPases associated with a variety of cellular activities BF35_601 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF35_624 SM00852 Probable molybdopterin binding domain BF35_626 SM00729 Elongator protein 3, MiaB family, Radical SAM BF35_627 SM00100 Cyclic nucleotide-monophosphate binding domain BF35_627 SM00419 helix_turn_helix, cAMP Regulatory protein BF35_631 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF35_637 SM00460 Transglutaminase/protease-like homologues BF35_640 SM00849 Metallo-beta-lactamase superfamily BF35_645 SM00829 Enoylreductase BF35_649 SM00487 DEAD-like helicases superfamily BF35_649 SM00490 helicase superfamily c-terminal domain BF35_67 SM00422 helix_turn_helix, mercury resistance BF35_671 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_677 SM01005 Alanine racemase, C-terminal domain BF35_680 SM00855 Phosphoglycerate mutase family BF35_684 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF35_691 SM00346 helix_turn_helix isocitrate lyase regulation BF35_693 SM00244 prohibitin homologues BF35_709 SM01091 Transporter associated domain BF35_714 SM00155 Phospholipase D. Active site motifs. BF35_724 SM00855 Phosphoglycerate mutase family BF35_735 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF35_747 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF35_747 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_753 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF35_756 SM00966 SpoVT / AbrB like domain BF35_761 SM00460 Transglutaminase/protease-like homologues BF35_766 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF35_780 SM00387 Histidine kinase-like ATPases BF35_780 SM00388 His Kinase A (phosphoacceptor) domain BF35_781 SM00448 cheY-homologous receiver domain BF35_781 SM00862 Transcriptional regulatory protein, C terminal BF35_79 SM00740 BF35_79 BF35_797 SM00387 Histidine kinase-like ATPases BF35_797 SM00388 His Kinase A (phosphoacceptor) domain BF35_798 SM00448 cheY-homologous receiver domain BF35_798 SM00862 Transcriptional regulatory protein, C terminal BF35_799 SM00382 ATPases associated with a variety of cellular activities BF35_80 SM00014 Acid phosphatase homologues BF35_801 SM00287 Bacterial SH3 domain homologues BF35_81 SM00829 Enoylreductase BF35_812 SM00382 ATPases associated with a variety of cellular activities BF35_813 SM00382 ATPases associated with a variety of cellular activities BF35_817 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_824 SM00382 ATPases associated with a variety of cellular activities BF35_825 SM00382 ATPases associated with a variety of cellular activities BF35_832 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF35_84 SM00387 Histidine kinase-like ATPases BF35_84 SM00388 His Kinase A (phosphoacceptor) domain BF35_851 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF35_851 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF35_851 SM00493 BF35_851 BF35_854 SM01011 Aminopeptidase P, N-terminal domain BF35_859 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF35_861 SM01133 BF35_861 BF35_87 SM00382 ATPases associated with a variety of cellular activities BF35_874 SM00450 Rhodanese Homology Domain BF35_879 SM00448 cheY-homologous receiver domain BF35_879 SM00862 Transcriptional regulatory protein, C terminal BF35_886 SM00860 SMI1 / KNR4 family BF35_893 SM00850 LytTr DNA-binding domain BF35_9 SM00642 Alpha-amylase domain BF35_900 SM00854 Bacterial capsule synthesis protein PGA_cap BF35_91 SM00091 PAS domain BF35_91 SM00387 Histidine kinase-like ATPases BF35_91 SM00388 His Kinase A (phosphoacceptor) domain BF35_932 SM00047 Lysozyme subfamily 2 BF35_933 SM00646 BF35_933 BF35_940 SM00530 Helix-turn-helix XRE-family like proteins BF35_943 SM00487 DEAD-like helicases superfamily BF35_943 SM00490 helicase superfamily c-terminal domain BF35_944 SM00448 cheY-homologous receiver domain BF35_945 SM00387 Histidine kinase-like ATPases BF35_946 SM00919 Malic enzyme, NAD binding domain BF35_946 SM01274 BF35_946 BF35_950 SM00155 Phospholipase D. Active site motifs. BF35_953 SM00382 ATPases associated with a variety of cellular activities BF35_955 SM00421 helix_turn_helix, Lux Regulon BF35_955 SM00448 cheY-homologous receiver domain BF35_962 SM00530 Helix-turn-helix XRE-family like proteins BF35_972 SM00849 Metallo-beta-lactamase superfamily BF35_976 SM00422 helix_turn_helix, mercury resistance BF35_981 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF35_983 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF35_983 SM00895 BF35_983 BF35_991 SM00347 helix_turn_helix multiple antibiotic resistance protein BF35_998 SM00835 Cupin