locus-tag class description BF28_1 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF28_1001 PF00579 tRNA synthetases class I (W and Y) BF28_1001 PF01479 S4 domain BF28_1010 PF00163 Ribosomal protein S4/S9 N-terminal domain BF28_1010 PF01479 S4 domain BF28_1011 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_1012 PF13185 GAF domain BF28_1013 PF00440 Bacterial regulatory proteins, tetR family BF28_1014 PF00892 EamA-like transporter family BF28_1015 PF03466 LysR substrate binding domain BF28_1015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_1016 PF06160 Septation ring formation regulator, EzrA BF28_1017 PF00266 Aminotransferase class-V BF28_1018 PF02926 THUMP domain BF28_1018 PF02568 Thiamine biosynthesis protein (ThiI) BF28_1019 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_1020 PF00501 AMP-binding enzyme BF28_1020 PF13193 AMP-binding enzyme C-terminal domain BF28_1022 PF07969 Amidohydrolase family BF28_1023 PF01513 ATP-NAD kinase BF28_1025 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF28_1026 PF08534 Redoxin BF28_1027 PF02384 N-6 DNA Methylase BF28_1028 PF00871 Acetokinase family BF28_1030 PF12787 EcsC protein family BF28_1031 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_1031 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_1035 PF00764 Arginosuccinate synthase BF28_1036 PF14698 Argininosuccinate lyase C-terminal BF28_1036 PF00206 Lyase BF28_1040 PF00582 Universal stress protein family BF28_1042 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF28_1042 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF28_1044 PF01381 Helix-turn-helix BF28_1046 PF07883 Cupin domain BF28_1054 PF01321 Creatinase/Prolidase N-terminal domain BF28_1054 PF00557 Metallopeptidase family M24 BF28_1057 PF07085 DRTGG domain BF28_1057 PF00571 CBS domain BF28_1057 PF03061 Thioesterase superfamily BF28_1057 PF00392 Bacterial regulatory proteins, gntR family BF28_1059 PF01636 Phosphotransferase enzyme family BF28_1061 PF14007 YtpI-like protein BF28_1062 PF02272 DHHA1 domain BF28_1062 PF01368 DHH family BF28_1064 PF14034 Sporulation protein YtrH BF28_1065 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF28_1065 PF14579 Helix-hairpin-helix motif BF28_1065 PF02811 PHP domain BF28_1065 PF01336 OB-fold nucleic acid binding domain BF28_1065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF28_1066 PF03949 Malic enzyme, NAD binding domain BF28_1066 PF00390 Malic enzyme, N-terminal domain BF28_1067 PF00392 Bacterial regulatory proteins, gntR family BF28_1068 PF01039 Carboxyl transferase domain BF28_1068 PF17848 Acetyl-coA carboxylase zinc finger domain BF28_1069 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF28_107 PF01336 OB-fold nucleic acid binding domain BF28_107 PF00152 tRNA synthetases class II (D, K and N) BF28_1070 PF00365 Phosphofructokinase BF28_1071 PF02887 Pyruvate kinase, alpha/beta domain BF28_1071 PF00224 Pyruvate kinase, barrel domain BF28_1071 PF00391 PEP-utilising enzyme, mobile domain BF28_1072 PF04186 FxsA cytoplasmic membrane protein BF28_1073 PF01594 AI-2E family transporter BF28_1074 PF04284 Protein of unknown function (DUF441) BF28_1075 PF00285 Citrate synthase, C-terminal domain BF28_1076 PF00180 Isocitrate/isopropylmalate dehydrogenase BF28_1077 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_1077 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_108 PF01207 Dihydrouridine synthase (Dus) BF28_1081 PF00486 Transcriptional regulatory protein, C terminal BF28_1081 PF00072 Response regulator receiver domain BF28_1082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1082 PF16736 Single Cache-like BF28_1082 PF00989 PAS fold BF28_1082 PF00512 His Kinase A (phospho-acceptor) domain BF28_1083 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF28_1083 PF00476 DNA polymerase family A BF28_1083 PF01367 5'-3' exonuclease, C-terminal SAM fold BF28_1084 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BF28_1084 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BF28_1084 PF06827 Zinc finger found in FPG and IleRS BF28_1085 PF02659 Putative manganese efflux pump BF28_1086 PF01121 Dephospho-CoA kinase BF28_1087 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_1087 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF28_1089 PF02675 S-adenosylmethionine decarboxylase BF28_109 PF01381 Helix-turn-helix BF28_1090 PF03477 ATP cone domain BF28_1091 PF07261 Replication initiation and membrane attachment BF28_1092 PF07319 Primosomal protein DnaI N-terminus BF28_1092 PF01695 IstB-like ATP binding protein BF28_1093 PF08812 YtxC-like family BF28_1094 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_1094 PF02824 TGS domain BF28_1094 PF03129 Anticodon binding domain BF28_1094 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_1095 PF05198 Translation initiation factor IF-3, N-terminal domain BF28_1095 PF00707 Translation initiation factor IF-3, C-terminal domain BF28_1096 PF01632 Ribosomal protein L35 BF28_1097 PF00453 Ribosomal protein L20 BF28_1099 PF05343 M42 glutamyl aminopeptidase BF28_110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF28_1100 PF16859 Tetracyclin repressor-like, C-terminal domain BF28_1100 PF00440 Bacterial regulatory proteins, tetR family BF28_1102 PF07690 Major Facilitator Superfamily BF28_1105 PF01966 HD domain BF28_1106 PF14098 Small, acid-soluble spore protein I BF28_1107 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF28_1107 PF00588 SpoU rRNA Methylase family BF28_1108 PF01409 tRNA synthetases class II core domain (F) BF28_1108 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF28_1109 PF01588 Putative tRNA binding domain BF28_1109 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BF28_1109 PF03483 B3/4 domain BF28_1109 PF03484 tRNA synthetase B5 domain BF28_1109 PF03147 Ferredoxin-fold anticodon binding domain BF28_111 PF02152 Dihydroneopterin aldolase BF28_1110 PF01336 OB-fold nucleic acid binding domain BF28_1110 PF00152 tRNA synthetases class II (D, K and N) BF28_1114 PF11858 Domain of unknown function (DUF3378) BF28_1114 PF01351 Ribonuclease HII BF28_1115 PF05164 Cell division protein ZapA BF28_1116 PF02674 Colicin V production protein BF28_1117 PF14791 DNA polymerase beta thumb BF28_1117 PF14716 Helix-hairpin-helix domain BF28_1117 PF02811 PHP domain BF28_1118 PF01713 Smr domain BF28_1118 PF00488 MutS domain V BF28_112 PF00809 Pterin binding enzyme BF28_1120 PF01479 S4 domain BF28_1120 PF00849 RNA pseudouridylate synthase BF28_1121 PF05525 Branched-chain amino acid transport protein BF28_1122 PF05031 Iron Transport-associated domain BF28_1123 PF05031 Iron Transport-associated domain BF28_1124 PF01497 Periplasmic binding protein BF28_1125 PF01032 FecCD transport family BF28_1126 PF00005 ABC transporter BF28_1127 PF04203 Sortase domain BF28_1128 PF03992 Antibiotic biosynthesis monooxygenase BF28_113 PF01063 Amino-transferase class IV BF28_1130 PF17785 PUA-like domain BF28_1130 PF10672 S-adenosylmethionine-dependent methyltransferase BF28_1131 PF09962 Uncharacterized conserved protein (DUF2196) BF28_1133 PF00072 Response regulator receiver domain BF28_1133 PF00486 Transcriptional regulatory protein, C terminal BF28_1134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1134 PF00512 His Kinase A (phospho-acceptor) domain BF28_1135 PF00005 ABC transporter BF28_114 PF00117 Glutamine amidotransferase class-I BF28_1140 PF05163 DinB family BF28_1142 PF13193 AMP-binding enzyme C-terminal domain BF28_1142 PF00501 AMP-binding enzyme BF28_1143 PF00440 Bacterial regulatory proteins, tetR family BF28_1143 PF08359 YsiA-like protein, C-terminal region BF28_1144 PF00378 Enoyl-CoA hydratase/isomerase BF28_1145 PF01012 Electron transfer flavoprotein domain BF28_1146 PF01012 Electron transfer flavoprotein domain BF28_1146 PF00766 Electron transfer flavoprotein FAD-binding domain BF28_1147 PF00085 Thioredoxin BF28_1148 PF08459 UvrC Helix-hairpin-helix N-terminal BF28_1148 PF01541 GIY-YIG catalytic domain BF28_1148 PF02151 UvrB/uvrC motif BF28_1149 PF10702 Protein of unknown function (DUF2507) BF28_115 PF04715 Anthranilate synthase component I, N terminal region BF28_115 PF00425 chorismate binding enzyme BF28_1150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BF28_1151 PF02910 Fumarate reductase flavoprotein C-term BF28_1151 PF00890 FAD binding domain BF28_1152 PF13183 4Fe-4S dicluster domain BF28_1152 PF13085 2Fe-2S iron-sulfur cluster binding domain BF28_1153 PF03061 Thioesterase superfamily BF28_1154 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_1155 PF01618 MotA/TolQ/ExbB proton channel family BF28_1156 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF28_1156 PF00691 OmpA family BF28_1157 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BF28_1158 PF13732 Domain of unknown function (DUF4162) BF28_1158 PF00005 ABC transporter BF28_116 PF00291 Pyridoxal-phosphate dependent enzyme BF28_1160 PF02082 Transcriptional regulator BF28_1161 PF00230 Major intrinsic protein BF28_1162 PF13536 Putative multidrug resistance efflux transporter BF28_1163 PF01381 Helix-turn-helix BF28_1163 PF07883 Cupin domain BF28_1164 PF04024 PspC domain BF28_1166 PF00072 Response regulator receiver domain BF28_1166 PF04397 LytTr DNA-binding domain BF28_1167 PF07694 5TMR of 5TMR-LYT BF28_1167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1167 PF06580 Histidine kinase BF28_1168 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_1168 PF00005 ABC transporter BF28_1169 PF00005 ABC transporter BF28_1169 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_117 PF01430 Hsp33 protein BF28_1170 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1172 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_1173 PF07969 Amidohydrolase family BF28_1174 PF07969 Amidohydrolase family BF28_1176 PF00860 Permease family BF28_1177 PF00196 Bacterial regulatory proteins, luxR family BF28_1179 PF01177 Asp/Glu/Hydantoin racemase BF28_118 PF03309 Type III pantothenate kinase BF28_1180 PF10646 Sporulation and spore germination BF28_1181 PF03725 3' exoribonuclease family, domain 2 BF28_1181 PF01138 3' exoribonuclease family, domain 1 BF28_1182 PF01725 Ham1 family BF28_1183 PF12850 Calcineurin-like phosphoesterase superfamily domain BF28_1186 PF00589 Phage integrase family BF28_1186 PF02899 Phage integrase, N-terminal SAM-like domain BF28_1189 PF00239 Resolvase, N terminal domain BF28_1189 PF02796 Helix-turn-helix domain of resolvase BF28_119 PF00004 ATPase family associated with various cellular activities (AAA) BF28_119 PF06480 FtsH Extracellular BF28_119 PF01434 Peptidase family M41 BF28_119 PF17862 AAA+ lid domain BF28_1198 PF08000 Bacterial PH domain BF28_1198 PF11724 YvbH-like oligomerisation region BF28_1203 PF05698 Bacterial trigger factor protein (TF) C-terminus BF28_1203 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF28_1203 PF05697 Bacterial trigger factor protein (TF) BF28_1204 PF07724 AAA domain (Cdc48 subfamily) BF28_1204 PF06689 ClpX C4-type zinc finger BF28_1204 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_1205 PF05362 Lon protease (S16) C-terminal proteolytic domain BF28_1205 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1206 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1206 PF05362 Lon protease (S16) C-terminal proteolytic domain BF28_1206 PF02190 ATP-dependent protease La (LON) substrate-binding domain BF28_1207 PF01926 50S ribosome-binding GTPase BF28_1208 PF02566 OsmC-like protein BF28_1209 PF01047 MarR family BF28_121 PF09179 TilS substrate binding domain BF28_121 PF01171 PP-loop family BF28_121 PF11734 TilS substrate C-terminal domain BF28_1210 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BF28_1210 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BF28_1210 PF01488 Shikimate / quinate 5-dehydrogenase BF28_1211 PF01578 Cytochrome C assembly protein BF28_1212 PF03900 Porphobilinogen deaminase, C-terminal domain BF28_1212 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BF28_1213 PF02602 Uroporphyrinogen-III synthase HemD BF28_1214 PF00490 Delta-aminolevulinic acid dehydratase BF28_1215 PF00202 Aminotransferase class-III BF28_1216 PF01476 LysM domain BF28_1218 PF00133 tRNA synthetases class I (I, L, M and V) BF28_1218 PF10458 Valyl tRNA synthetase tRNA binding arm BF28_1218 PF08264 Anticodon-binding domain of tRNA BF28_1219 PF02875 Mur ligase family, glutamate ligase domain BF28_1219 PF08245 Mur ligase middle domain BF28_122 PF07228 Stage II sporulation protein E (SpoIIE) BF28_1221 PF02545 Maf-like protein BF28_1222 PF04002 RadC-like JAB domain BF28_1224 PF04085 rod shape-determining protein MreC BF28_1226 PF03775 Septum formation inhibitor MinC, C-terminal domain BF28_1227 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF28_1228 PF01551 Peptidase family M23 BF28_1229 PF02163 Peptidase family M50 BF28_1230 PF10150 Ribonuclease E/G family BF28_1230 PF00575 S1 RNA binding domain BF28_1231 PF00829 Ribosomal prokaryotic L21 protein BF28_1232 PF04327 Cysteine protease Prp BF28_1233 PF01016 Ribosomal L27 protein BF28_1234 PF14682 Sporulation initiation phospho-transferase B, C-terminal BF28_1234 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF28_1235 PF01926 50S ribosome-binding GTPase BF28_1235 PF01018 GTP1/OBG BF28_1235 PF09269 Domain of unknown function (DUF1967) BF28_1236 PF00072 Response regulator receiver domain BF28_1236 PF00486 Transcriptional regulatory protein, C terminal BF28_1237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1238 PF00005 ABC transporter BF28_1239 PF02687 FtsX-like permease family BF28_1240 PF02687 FtsX-like permease family BF28_1241 PF01842 ACT domain BF28_1241 PF00800 Prephenate dehydratase BF28_1242 PF03473 MOSC domain BF28_1242 PF03475 3-alpha domain BF28_1243 PF08279 HTH domain BF28_1243 PF02829 3H domain BF28_1244 PF00266 Aminotransferase class-V BF28_1245 PF00890 FAD binding domain BF28_1245 PF02910 Fumarate reductase flavoprotein C-term BF28_1246 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF28_1246 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF28_1247 PF02445 Quinolinate synthetase A protein BF28_1248 PF01476 LysM domain BF28_125 PF00575 S1 RNA binding domain BF28_1251 PF01022 Bacterial regulatory protein, arsR family BF28_1252 PF00892 EamA-like transporter family BF28_1254 PF01497 Periplasmic binding protein BF28_1255 PF01330 RuvA N terminal domain BF28_1255 PF07499 RuvA, C-terminal domain BF28_1256 PF17864 RuvB AAA lid domain BF28_1256 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF28_1256 PF05491 RuvB C-terminal winged helix domain BF28_1257 PF11146 Protein of unknown function (DUF2905) BF28_1258 PF02547 Queuosine biosynthesis protein BF28_1259 PF01702 Queuine tRNA-ribosyltransferase BF28_1260 PF02699 Preprotein translocase subunit BF28_1262 PF04239 Protein of unknown function (DUF421) BF28_1263 PF01943 Polysaccharide biosynthesis protein BF28_1263 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_1264 PF13797 Post-transcriptional regulator BF28_1265 PF02355 Protein export membrane protein BF28_1265 PF07549 SecD/SecF GG Motif BF28_1266 PF16916 Dimerisation domain of Zinc Transporter BF28_1266 PF01545 Cation efflux family BF28_1267 PF02272 DHHA1 domain BF28_1267 PF17768 RecJ OB domain BF28_1267 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BF28_1267 PF01368 DHH family BF28_1268 PF00156 Phosphoribosyl transferase domain BF28_1269 PF02824 TGS domain BF28_1269 PF04607 Region found in RelA / SpoT proteins BF28_1269 PF13291 ACT domain BF28_127 PF09578 Spore cortex protein YabQ (Spore_YabQ) BF28_1270 PF02580 D-Tyr-tRNA(Tyr) deacylase BF28_1274 PF13393 Histidyl-tRNA synthetase BF28_1274 PF03129 Anticodon binding domain BF28_1275 PF00152 tRNA synthetases class II (D, K and N) BF28_1275 PF02938 GAD domain BF28_1275 PF01336 OB-fold nucleic acid binding domain BF28_1276 PF00899 ThiF family BF28_1278 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF28_1278 PF12002 MgsA AAA+ ATPase C terminal BF28_1278 PF16193 AAA C-terminal domain BF28_1279 PF02082 Transcriptional regulator BF28_128 PF07873 YabP family BF28_1280 PF00266 Aminotransferase class-V BF28_1283 PF13538 UvrD-like helicase C-terminal domain BF28_1283 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BF28_1283 PF14490 Helix-hairpin-helix containing domain BF28_1287 PF01594 AI-2E family transporter BF28_1289 PF02272 DHHA1 domain BF28_1289 PF01411 tRNA synthetases class II (A) BF28_1289 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_129 PF01479 S4 domain BF28_1290 PF06135 IreB regulatory phosphoprotein BF28_1291 PF03652 Holliday junction resolvase BF28_1292 PF06949 Protein of unknown function (DUF1292) BF28_1293 PF02618 YceG-like family BF28_1297 PF00485 Phosphoribulokinase / Uridine kinase family BF28_1298 PF03449 Transcription elongation factor, N-terminal BF28_1298 PF01272 Transcription elongation factor, GreA/GreB, C-term BF28_1299 PF03717 Penicillin-binding Protein dimerisation domain BF28_1299 PF00905 Penicillin binding protein transpeptidase domain BF28_130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_130 PF03819 MazG nucleotide pyrophosphohydrolase domain BF28_1302 PF08241 Methyltransferase domain BF28_1303 PF01048 Phosphorylase superfamily BF28_1304 PF00291 Pyridoxal-phosphate dependent enzyme BF28_1305 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_1306 PF00465 Iron-containing alcohol dehydrogenase BF28_1306 PF00171 Aldehyde dehydrogenase family BF28_1307 PF14143 YrhC-like protein BF28_1308 PF01497 Periplasmic binding protein BF28_1309 PF01032 FecCD transport family BF28_131 PF01943 Polysaccharide biosynthesis protein BF28_131 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_1310 PF00005 ABC transporter BF28_1316 PF07681 DoxX BF28_1317 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_1319 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BF28_132 PF15714 Stage V sporulation protein T C-terminal, transcription factor BF28_132 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF28_1320 PF13860 FlgD Ig-like domain BF28_1320 PF05922 Peptidase inhibitor I9 BF28_1320 PF02225 PA domain BF28_1320 PF00082 Subtilase family BF28_1327 PF08386 TAP-like protein BF28_1327 PF00561 alpha/beta hydrolase fold BF28_1329 PF00245 Alkaline phosphatase BF28_133 PF17757 UvrB interaction domain BF28_133 PF00271 Helicase conserved C-terminal domain BF28_133 PF02559 CarD-like/TRCF domain BF28_133 PF03461 TRCF domain BF28_133 PF00270 DEAD/DEAH box helicase BF28_1331 PF04607 Region found in RelA / SpoT proteins BF28_1332 PF00881 Nitroreductase family BF28_1333 PF00471 Ribosomal protein L33 BF28_1334 PF16244 Domain of unknown function (DUF4901) BF28_1336 PF13333 Integrase core domain BF28_1336 PF00665 Integrase core domain BF28_1336 PF13276 HTH-like domain BF28_1338 PF04542 Sigma-70 region 2 BF28_1338 PF04545 Sigma-70, region 4 BF28_1339 PF02666 Phosphatidylserine decarboxylase BF28_1342 PF01926 50S ribosome-binding GTPase BF28_1343 PF01488 Shikimate / quinate 5-dehydrogenase BF28_1343 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BF28_1343 PF08501 Shikimate dehydrogenase substrate binding domain BF28_1344 PF01985 CRS1 / YhbY (CRM) domain BF28_1345 PF01467 Cytidylyltransferase-like BF28_1346 PF01966 HD domain BF28_1348 PF13649 Methyltransferase domain BF28_1349 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_1349 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_135 PF01195 Peptidyl-tRNA hydrolase BF28_1350 PF10531 SLBB domain BF28_1351 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_1352 PF13567 Domain of unknown function (DUF4131) BF28_1352 PF00753 Metallo-beta-lactamase superfamily BF28_1352 PF03772 Competence protein BF28_1353 PF14141 YqzM-like protein BF28_1354 PF06144 DNA polymerase III, delta subunit BF28_1355 PF01649 Ribosomal protein S20 BF28_1356 PF03418 Germination protease BF28_1358 PF00679 Elongation factor G C-terminus BF28_1358 PF06421 GTP-binding protein LepA C-terminus BF28_1358 PF03144 Elongation factor Tu domain 2 BF28_1358 PF00009 Elongation factor Tu GTP binding domain BF28_1359 PF01638 HxlR-like helix-turn-helix BF28_136 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF28_136 PF14572 Phosphoribosyl synthetase-associated domain BF28_1360 PF04055 Radical SAM superfamily BF28_1360 PF06969 HemN C-terminal domain BF28_1361 PF01628 HrcA protein C terminal domain BF28_1362 PF01025 GrpE BF28_1363 PF00012 Hsp70 protein BF28_1364 PF00684 DnaJ central domain BF28_1364 PF00226 DnaJ domain BF28_1364 PF01556 DnaJ C terminal domain BF28_1366 PF04452 RNA methyltransferase BF28_1367 PF01938 TRAM domain BF28_1367 PF00919 Uncharacterized protein family UPF0004 BF28_1367 PF04055 Radical SAM superfamily BF28_1368 PF01165 Ribosomal protein S21 BF28_1369 PF09424 Yqey-like protein BF28_137 PF00483 Nucleotidyl transferase BF28_137 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_1370 PF07873 YabP family BF28_1371 PF06898 Putative stage IV sporulation protein YqfD BF28_1372 PF02562 PhoH-like protein BF28_1373 PF01966 HD domain BF28_1373 PF07697 7TM-HD extracellular BF28_1373 PF07698 7TM receptor with intracellular HD hydrolase BF28_1374 PF02130 Uncharacterized protein family UPF0054 BF28_1375 PF01219 Prokaryotic diacylglycerol kinase BF28_1376 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_1377 PF07650 KH domain BF28_1377 PF01926 50S ribosome-binding GTPase BF28_1379 PF11967 Recombination protein O N terminal BF28_1379 PF02565 Recombination protein O C terminal BF28_138 PF04026 SpoVG BF28_1380 PF00571 CBS domain BF28_1380 PF08279 HTH domain BF28_1381 PF03618 Kinase/pyrophosphorylase BF28_1382 PF10410 DnaB-helicase binding domain of primase BF28_1382 PF08275 DNA primase catalytic core, N-terminal domain BF28_1382 PF01807 CHC2 zinc finger BF28_1383 PF04542 Sigma-70 region 2 BF28_1383 PF04545 Sigma-70, region 4 BF28_1383 PF03979 Sigma-70 factor, region 1.1 BF28_1383 PF04539 Sigma-70 region 3 BF28_1383 PF00140 Sigma-70 factor, region 1.2 BF28_1384 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF28_1385 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BF28_1386 PF01784 NIF3 (NGG1p interacting factor 3) BF28_1387 PF02401 LytB protein BF28_1389 PF00271 Helicase conserved C-terminal domain BF28_1389 PF00270 DEAD/DEAH box helicase BF28_139 PF01042 Endoribonuclease L-PSP BF28_1390 PF01261 Xylose isomerase-like TIM barrel BF28_1391 PF11116 Protein of unknown function (DUF2624) BF28_1392 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_1392 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_1393 PF00005 ABC transporter BF28_1394 PF00950 ABC 3 transport family BF28_1395 PF01475 Ferric uptake regulator family BF28_1396 PF04551 GcpE protein BF28_140 PF00156 Phosphoribosyl transferase domain BF28_140 PF09182 Bacterial purine repressor, N-terminal BF28_1400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF28_1400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF28_1401 PF07690 Major Facilitator Superfamily BF28_1403 PF12849 PBP superfamily domain BF28_1404 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1405 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1406 PF00005 ABC transporter BF28_1407 PF01895 PhoU domain BF28_1408 PF00483 Nucleotidyl transferase BF28_1409 PF00471 Ribosomal protein L33 BF28_141 PF00288 GHMP kinases N terminal domain BF28_141 PF08544 GHMP kinases C terminal BF28_1410 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF28_1411 PF06014 Bacterial protein of unknown function (DUF910) BF28_1412 PF00480 ROK family BF28_1413 PF10958 Protein of unknown function (DUF2759) BF28_1414 PF00753 Metallo-beta-lactamase superfamily BF28_1416 PF01022 Bacterial regulatory protein, arsR family BF28_1418 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_1419 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_142 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_1420 PF02219 Methylenetetrahydrofolate reductase BF28_1420 PF02574 Homocysteine S-methyltransferase BF28_1421 PF00809 Pterin binding enzyme BF28_1421 PF02574 Homocysteine S-methyltransferase BF28_1421 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF28_1421 PF02607 B12 binding domain BF28_1421 PF02310 B12 binding domain BF28_1422 PF04101 Glycosyltransferase family 28 C-terminal domain BF28_1422 PF03033 Glycosyltransferase family 28 N-terminal domain BF28_1428 PF00375 Sodium:dicarboxylate symporter family BF28_1429 PF11117 Protein of unknown function (DUF2626) BF28_143 PF06257 Biofilm formation stimulator VEG BF28_1431 PF00437 Type II/IV secretion system protein BF28_1432 PF00482 Type II secretion system (T2SS), protein F BF28_1434 PF07963 Prokaryotic N-terminal methylation motif BF28_1439 PF01202 Shikimate kinase BF28_144 PF05582 YabG peptidase U57 BF28_1440 PF14038 YqzE-like protein BF28_1444 PF11079 Bacterial protein YqhG of unknown function BF28_1445 PF00176 SNF2 family N-terminal domain BF28_1445 PF00271 Helicase conserved C-terminal domain BF28_1446 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF28_1446 PF01571 Aminomethyltransferase folate-binding domain BF28_1447 PF02347 Glycine cleavage system P-protein BF28_1448 PF02347 Glycine cleavage system P-protein BF28_145 PF00398 Ribosomal RNA adenine dimethylase BF28_1451 PF00392 Bacterial regulatory proteins, gntR family BF28_1452 PF00005 ABC transporter BF28_1459 PF00893 Small Multidrug Resistance protein BF28_146 PF13331 Domain of unknown function (DUF4093) BF28_146 PF13662 Toprim domain BF28_1460 PF00893 Small Multidrug Resistance protein BF28_1462 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF28_1462 PF00356 Bacterial regulatory proteins, lacI family BF28_1464 PF00581 Rhodanese-like domain BF28_1465 PF03099 Biotin/lipoate A/B protein ligase family BF28_147 PF01026 TatD related DNase BF28_1470 PF02742 Iron dependent repressor, metal binding and dimerisation domain BF28_1470 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF28_1472 PF13419 Haloacid dehalogenase-like hydrolase BF28_1473 PF07136 Protein of unknown function (DUF1385) BF28_1474 PF11085 Conserved membrane protein YqhR BF28_1475 PF01220 Dehydroquinase class II BF28_1476 PF01321 Creatinase/Prolidase N-terminal domain BF28_1476 PF00557 Metallopeptidase family M24 BF28_1477 PF01132 Elongation factor P (EF-P) OB domain BF28_1477 PF09285 Elongation factor P, C-terminal BF28_1477 PF08207 Elongation factor P (EF-P) KOW-like domain BF28_148 PF01588 Putative tRNA binding domain BF28_148 PF08264 Anticodon-binding domain of tRNA BF28_148 PF09334 tRNA synthetases class I (M) BF28_1482 PF09548 Stage III sporulation protein AB (spore_III_AB) BF28_1483 PF06686 Stage III sporulation protein AC/AD protein family BF28_1484 PF06686 Stage III sporulation protein AC/AD protein family BF28_1485 PF09546 Stage III sporulation protein AE (spore_III_AE) BF28_1486 PF09581 Stage III sporulation protein AF (Spore_III_AF) BF28_1488 PF12685 SpoIIIAH-like protein BF28_149 PF18277 AbrB C-terminal domain BF28_149 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF28_1490 PF00364 Biotin-requiring enzyme BF28_1491 PF00289 Biotin carboxylase, N-terminal domain BF28_1491 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_1491 PF02785 Biotin carboxylase C-terminal domain BF28_1492 PF03780 Asp23 family, cell envelope-related function BF28_1493 PF01029 NusB family BF28_1494 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF28_1494 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF28_1495 PF02601 Exonuclease VII, large subunit BF28_1495 PF13742 OB-fold nucleic acid binding domain BF28_1496 PF02609 Exonuclease VII small subunit BF28_1497 PF00348 Polyprenyl synthetase BF28_1498 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF28_1498 PF02779 Transketolase, pyrimidine binding domain BF28_1498 PF02780 Transketolase, C-terminal domain BF28_1499 PF01728 FtsJ-like methyltransferase BF28_1499 PF01479 S4 domain BF28_150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_1500 PF01316 Arginine repressor, DNA binding domain BF28_1500 PF02863 Arginine repressor, C-terminal domain BF28_1501 PF13476 AAA domain BF28_1502 PF05580 SpoIVB peptidase S55 BF28_1502 PF17820 PDZ domain BF28_1503 PF08769 Sporulation initiation factor Spo0A C terminal BF28_1503 PF00072 Response regulator receiver domain BF28_1504 PF14436 Bacterial EndoU nuclease BF28_1504 PF04740 LXG domain of WXG superfamily BF28_1507 PF14174 YycC-like protein BF28_1508 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_1509 PF11118 Protein of unknown function (DUF2627) BF28_151 PF01541 GIY-YIG catalytic domain BF28_1510 PF00989 PAS fold BF28_1510 PF00158 Sigma-54 interaction domain BF28_1510 PF02954 Bacterial regulatory protein, Fis family BF28_1511 PF01515 Phosphate acetyl/butaryl transferase BF28_1512 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF28_1512 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_1513 PF00871 Acetokinase family BF28_1514 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_1514 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_1515 PF00676 Dehydrogenase E1 component BF28_1516 PF02780 Transketolase, C-terminal domain BF28_1516 PF02779 Transketolase, pyrimidine binding domain BF28_1517 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_1517 PF02817 e3 binding domain BF28_1517 PF00364 Biotin-requiring enzyme BF28_1518 PF01098 Cell cycle protein BF28_1519 PF04239 Protein of unknown function (DUF421) BF28_152 PF05175 Methyltransferase small domain BF28_1520 PF00293 NUDIX domain BF28_1520 PF09297 NADH pyrophosphatase zinc ribbon domain BF28_1521 PF11208 Protein of unknown function (DUF2992) BF28_1522 PF06491 Disulphide isomerase BF28_1523 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_1524 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1525 PF00005 ABC transporter BF28_1526 PF06081 Aromatic acid exporter family member 1 BF28_1526 PF11728 Putative aromatic acid exporter C-terminal domain BF28_1527 PF03734 L,D-transpeptidase catalytic domain BF28_1529 PF13302 Acetyltransferase (GNAT) domain BF28_153 PF06156 Initiation control protein YabA BF28_1530 PF07687 Peptidase dimerisation domain BF28_1530 PF01546 Peptidase family M20/M25/M40 BF28_1531 PF00817 impB/mucB/samB family BF28_1531 PF11799 impB/mucB/samB family C-terminal domain BF28_1531 PF11798 IMS family HHH motif BF28_1533 PF12706 Beta-lactamase superfamily domain BF28_1533 PF00753 Metallo-beta-lactamase superfamily BF28_1534 PF03315 Serine dehydratase beta chain BF28_1534 PF01842 ACT domain BF28_1535 PF03313 Serine dehydratase alpha chain BF28_1536 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_1536 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_1537 PF00753 Metallo-beta-lactamase superfamily BF28_1538 PF00106 short chain dehydrogenase BF28_154 PF04468 PSP1 C-terminal conserved region BF28_1540 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF28_1540 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF28_1541 PF01960 ArgJ family BF28_1542 PF00696 Amino acid kinase family BF28_1543 PF00202 Aminotransferase class-III BF28_1544 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF28_1544 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF28_1547 PF01037 Lrp/AsnC ligand binding domain BF28_1547 PF13404 AsnC-type helix-turn-helix domain BF28_1549 PF02872 5'-nucleotidase, C-terminal domain BF28_1549 PF00149 Calcineurin-like phosphoesterase BF28_155 PF09115 DNA polymerase III, delta subunit, C terminal BF28_1552 PF00202 Aminotransferase class-III BF28_1554 PF00155 Aminotransferase class I and II BF28_1555 PF08241 Methyltransferase domain BF28_1555 PF12697 Alpha/beta hydrolase family BF28_1556 PF13847 Methyltransferase domain BF28_1557 PF06968 Biotin and Thiamin Synthesis associated domain BF28_1557 PF04055 Radical SAM superfamily BF28_1559 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF28_156 PF02223 Thymidylate kinase BF28_1560 PF00925 GTP cyclohydrolase II BF28_1560 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BF28_1561 PF00677 Lumazine binding domain BF28_1562 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_1562 PF01872 RibD C-terminal domain BF28_1564 PF10827 Protein of unknown function (DUF2552) BF28_1565 PF12146 Serine aminopeptidase, S33 BF28_1566 PF00583 Acetyltransferase (GNAT) family BF28_1567 PF00356 Bacterial regulatory proteins, lacI family BF28_1568 PF13726 Na+-H+ antiporter family BF28_1568 PF03553 Na+/H+ antiporter family BF28_1569 PF12146 Serine aminopeptidase, S33 BF28_157 PF01276 Orn/Lys/Arg decarboxylase, major domain BF28_157 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF28_1571 PF02872 5'-nucleotidase, C-terminal domain BF28_1571 PF00565 Staphylococcal nuclease homologue BF28_1571 PF00746 LPXTG cell wall anchor motif BF28_1571 PF00149 Calcineurin-like phosphoesterase BF28_1573 PF13673 Acetyltransferase (GNAT) domain BF28_1573 PF04229 GrpB protein BF28_1574 PF00248 Aldo/keto reductase family BF28_1575 PF00248 Aldo/keto reductase family BF28_1576 PF13072 Mother cell inhibitor of FtsZ BF28_1577 PF00293 NUDIX domain BF28_1579 PF01944 Stage II sporulation protein M BF28_1580 PF01475 Ferric uptake regulator family BF28_1581 PF14004 Protein of unknown function (DUF4227) BF28_1582 PF02899 Phage integrase, N-terminal SAM-like domain BF28_1582 PF00589 Phage integrase family BF28_1584 PF01676 Metalloenzyme superfamily BF28_1585 PF01048 Phosphorylase superfamily BF28_1586 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_1586 PF00591 Glycosyl transferase family, a/b domain BF28_1586 PF02885 Glycosyl transferase family, helical bundle domain BF28_1587 PF01544 CorA-like Mg2+ transporter protein BF28_1588 PF00860 Permease family BF28_1590 PF01047 MarR family BF28_1594 PF00005 ABC transporter BF28_1595 PF00392 Bacterial regulatory proteins, gntR family BF28_1596 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_1596 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_1597 PF01740 STAS domain BF28_1598 PF13581 Histidine kinase-like ATPase domain BF28_1599 PF04545 Sigma-70, region 4 BF28_1599 PF04539 Sigma-70 region 3 BF28_1599 PF04542 Sigma-70 region 2 BF28_1600 PF00209 Sodium:neurotransmitter symporter family BF28_1602 PF12164 Stage V sporulation protein AA BF28_1603 PF13782 Stage V sporulation protein AB BF28_1604 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF28_1605 PF07451 Stage V sporulation protein AD (SpoVAD) BF28_1606 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF28_1607 PF14097 Stage V sporulation protein AE1 BF28_1608 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_1610 PF06207 Protein of unknown function (DUF1002) BF28_1611 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF28_1612 PF00583 Acetyltransferase (GNAT) family BF28_1613 PF03745 Domain of unknown function (DUF309) BF28_1615 PF02616 Segregation and condensation protein ScpA BF28_1616 PF04079 Segregation and condensation complex subunit ScpB BF28_1618 PF01979 Amidohydrolase family BF28_1619 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF28_1622 PF03123 CAT RNA binding domain BF28_1622 PF00874 PRD domain BF28_1623 PF02378 Phosphotransferase system, EIIC BF28_1623 PF00367 phosphotransferase system, EIIB BF28_1623 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF28_1624 PF00381 PTS HPr component phosphorylation site BF28_1625 PF05524 PEP-utilising enzyme, N-terminal BF28_1625 PF00391 PEP-utilising enzyme, mobile domain BF28_1625 PF02896 PEP-utilising enzyme, TIM barrel domain BF28_1628 PF00881 Nitroreductase family BF28_1629 PF00990 Diguanylate cyclase, GGDEF domain BF28_163 PF07441 SigmaK-factor processing regulatory protein BofA BF28_1630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF28_1630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_1633 PF03079 ARD/ARD' family BF28_1634 PF00596 Class II Aldolase and Adducin N-terminal domain BF28_1636 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BF28_1636 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BF28_1637 PF00155 Aminotransferase class I and II BF28_1638 PF00795 Carbon-nitrogen hydrolase BF28_1639 PF01636 Phosphotransferase enzyme family BF28_164 PF10704 Protein of unknown function (DUF2508) BF28_1643 PF03551 Transcriptional regulator PadR-like family BF28_1649 PF00293 NUDIX domain BF28_165 PF02132 RecR protein BF28_165 PF13662 Toprim domain BF28_1650 PF00108 Thiolase, N-terminal domain BF28_1650 PF02803 Thiolase, C-terminal domain BF28_1651 PF02463 RecF/RecN/SMC N terminal domain BF28_1658 PF03459 TOBE domain BF28_1658 PF17912 MalK OB fold domain BF28_1658 PF00005 ABC transporter BF28_1659 PF16657 Maltogenic Amylase, C-terminal domain BF28_1659 PF00128 Alpha amylase, catalytic domain BF28_166 PF02575 YbaB/EbfC DNA-binding family BF28_1660 PF02903 Alpha amylase, N-terminal ig-like domain BF28_1660 PF00128 Alpha amylase, catalytic domain BF28_1660 PF16657 Maltogenic Amylase, C-terminal domain BF28_1661 PF13416 Bacterial extracellular solute-binding protein BF28_1662 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1663 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1664 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF28_1664 PF00356 Bacterial regulatory proteins, lacI family BF28_1665 PF00155 Aminotransferase class I and II BF28_1667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1667 PF00512 His Kinase A (phospho-acceptor) domain BF28_1669 PF14040 Deoxyribonuclease NucA/NucB BF28_167 PF12169 DNA polymerase III subunits gamma and tau domain III BF28_1671 PF08267 Cobalamin-independent synthase, N-terminal domain BF28_1671 PF01717 Cobalamin-independent synthase, Catalytic domain BF28_1673 PF07690 Major Facilitator Superfamily BF28_1678 PF14177 YkyB-like protein BF28_1679 PF02541 Ppx/GppA phosphatase family BF28_168 PF14437 MafB19-like deaminase BF28_1680 PF17941 Polyphosphate kinase C-terminal domain 1 BF28_1680 PF02503 Polyphosphate kinase middle domain BF28_1680 PF13089 Polyphosphate kinase N-terminal domain BF28_1680 PF13090 Polyphosphate kinase C-terminal domain 2 BF28_1682 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF28_1682 PF00149 Calcineurin-like phosphoesterase BF28_1684 PF00563 EAL domain BF28_1684 PF10388 EAL-domain associated signalling protein domain BF28_1687 PF08796 Protein of unknown function (DUF1797) BF28_1689 PF04308 Ribonuclease H-like BF28_169 PF00857 Isochorismatase family BF28_1692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_1692 PF03466 LysR substrate binding domain BF28_1693 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BF28_1693 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_1693 PF14602 Hexapeptide repeat of succinyl-transferase BF28_1694 PF07687 Peptidase dimerisation domain BF28_1694 PF01546 Peptidase family M20/M25/M40 BF28_1696 PF02080 TrkA-C domain BF28_1696 PF02254 TrkA-N domain BF28_1697 PF00753 Metallo-beta-lactamase superfamily BF28_1697 PF17770 Ribonuclease J C-terminal domain BF28_1697 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF28_170 PF01712 Deoxynucleoside kinase BF28_1700 PF01327 Polypeptide deformylase BF28_1702 PF00676 Dehydrogenase E1 component BF28_1703 PF02780 Transketolase, C-terminal domain BF28_1703 PF02779 Transketolase, pyrimidine binding domain BF28_1704 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_1704 PF02817 e3 binding domain BF28_1704 PF00364 Biotin-requiring enzyme BF28_1705 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_1705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_171 PF01712 Deoxynucleoside kinase BF28_1713 PF01276 Orn/Lys/Arg decarboxylase, major domain BF28_1713 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF28_1714 PF05256 Uncharacterised protein family (UPF0223) BF28_1715 PF06335 Protein of unknown function (DUF1054) BF28_1717 PF00459 Inositol monophosphatase family BF28_1720 PF14036 YlaH-like protein BF28_1722 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BF28_1724 PF02562 PhoH-like protein BF28_1724 PF13638 PIN domain BF28_1726 PF07408 Protein of unknown function (DUF1507) BF28_1727 PF01098 Cell cycle protein BF28_1728 PF02436 Conserved carboxylase domain BF28_1728 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_1728 PF00682 HMGL-like BF28_1728 PF00289 Biotin carboxylase, N-terminal domain BF28_1728 PF02785 Biotin carboxylase C-terminal domain BF28_1728 PF00364 Biotin-requiring enzyme BF28_1729 PF02628 Cytochrome oxidase assembly protein BF28_1730 PF01040 UbiA prenyltransferase family BF28_1731 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BF28_1731 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF28_1731 PF00034 Cytochrome c BF28_1732 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF28_1733 PF00510 Cytochrome c oxidase subunit III BF28_1734 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BF28_1735 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BF28_1736 PF00795 Carbon-nitrogen hydrolase BF28_1737 PF08868 YugN-like family BF28_1738 PF14504 CAP-associated N-terminal BF28_1738 PF00188 Cysteine-rich secretory protein family BF28_1739 PF14071 Putative coat protein BF28_174 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_174 PF02403 Seryl-tRNA synthetase N-terminal domain BF28_1740 PF14003 YlbE-like protein BF28_1741 PF00300 Histidine phosphatase superfamily (branch 1) BF28_1742 PF06133 Control of competence regulator ComK, YlbF/YmcA BF28_1743 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BF28_1746 PF07670 Nucleoside recognition BF28_1747 PF01467 Cytidylyltransferase-like BF28_1748 PF01734 Patatin-like phospholipase BF28_1749 PF05362 Lon protease (S16) C-terminal proteolytic domain BF28_1749 PF13180 PDZ domain BF28_175 PF01174 SNO glutamine amidotransferase family BF28_1750 PF05636 HIGH Nucleotidyl Transferase BF28_1751 PF02620 Large ribosomal RNA subunit accumulation protein YceD BF28_1752 PF01783 Ribosomal L32p protein family BF28_1754 PF00583 Acetyltransferase (GNAT) family BF28_1755 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF28_1755 PF02558 Ketopantoate reductase PanE/ApbA BF28_1756 PF10079 Bacillithiol biosynthesis BshC BF28_1757 PF01795 MraW methylase family BF28_1758 PF04977 Septum formation initiator BF28_176 PF01680 SOR/SNZ family BF28_1760 PF03793 PASTA domain BF28_1760 PF03717 Penicillin-binding Protein dimerisation domain BF28_1760 PF00905 Penicillin binding protein transpeptidase domain BF28_1761 PF08245 Mur ligase middle domain BF28_1761 PF01225 Mur ligase family, catalytic domain BF28_1761 PF02875 Mur ligase family, glutamate ligase domain BF28_1762 PF00953 Glycosyl transferase family 4 BF28_1762 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BF28_1763 PF08245 Mur ligase middle domain BF28_1763 PF02875 Mur ligase family, glutamate ligase domain BF28_1764 PF01098 Cell cycle protein BF28_1765 PF03033 Glycosyltransferase family 28 N-terminal domain BF28_1765 PF04101 Glycosyltransferase family 28 C-terminal domain BF28_1766 PF01565 FAD binding domain BF28_1766 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF28_1767 PF08478 POTRA domain, FtsQ-type BF28_1767 PF03799 Cell division protein FtsQ BF28_1768 PF02491 SHS2 domain inserted in FTSA BF28_1769 PF12327 FtsZ family, C-terminal domain BF28_1769 PF00091 Tubulin/FtsZ family, GTPase domain BF28_177 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_177 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_1770 PF03419 Sporulation factor SpoIIGA BF28_1771 PF04542 Sigma-70 region 2 BF28_1771 PF04545 Sigma-70, region 4 BF28_1772 PF04545 Sigma-70, region 4 BF28_1772 PF04542 Sigma-70 region 2 BF28_1772 PF04539 Sigma-70 region 3 BF28_1773 PF05239 PRC-barrel domain BF28_1775 PF01168 Alanine racemase, N-terminal domain BF28_1776 PF04472 Cell division protein SepF BF28_1777 PF02325 YGGT family BF28_1778 PF01479 S4 domain BF28_1778 PF17774 Putative RNA-binding domain in YlmH BF28_1779 PF05103 DivIVA protein BF28_178 PF00571 CBS domain BF28_178 PF00478 IMP dehydrogenase / GMP reductase domain BF28_1780 PF00133 tRNA synthetases class I (I, L, M and V) BF28_1780 PF08264 Anticodon-binding domain of tRNA BF28_1780 PF06827 Zinc finger found in FPG and IleRS BF28_1782 PF01252 Signal peptidase (SPase) II BF28_1783 PF01479 S4 domain BF28_1783 PF00849 RNA pseudouridylate synthase BF28_1784 PF00156 Phosphoribosyl transferase domain BF28_1785 PF00860 Permease family BF28_1786 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF28_1786 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF28_1787 PF01979 Amidohydrolase family BF28_1788 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF28_1788 PF00117 Glutamine amidotransferase class-I BF28_1789 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_1789 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF28_1789 PF02142 MGS-like domain BF28_179 PF14175 YaaC-like Protein BF28_1790 PF00175 Oxidoreductase NAD-binding domain BF28_1790 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF28_1791 PF01180 Dihydroorotate dehydrogenase BF28_1792 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF28_1793 PF00156 Phosphoribosyl transferase domain BF28_1799 PF00557 Metallopeptidase family M24 BF28_1799 PF01321 Creatinase/Prolidase N-terminal domain BF28_18 PF01522 Polysaccharide deacetylase BF28_1801 PF00690 Cation transporter/ATPase, N-terminus BF28_1801 PF00689 Cation transporting ATPase, C-terminus BF28_1802 PF03755 YicC-like family, N-terminal region BF28_1802 PF08340 Domain of unknown function (DUF1732) BF28_1803 PF04025 Domain of unknown function (DUF370) BF28_1804 PF00625 Guanylate kinase BF28_1805 PF01192 RNA polymerase Rpb6 BF28_1806 PF04127 DNA / pantothenate metabolism flavoprotein BF28_1806 PF02441 Flavoprotein BF28_1807 PF17764 3′ DNA-binding domain (3′BD) BF28_1807 PF00271 Helicase conserved C-terminal domain BF28_1807 PF04851 Type III restriction enzyme, res subunit BF28_1807 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BF28_1807 PF18074 Primosomal protein N C-terminal domain BF28_1808 PF01327 Polypeptide deformylase BF28_1809 PF02911 Formyl transferase, C-terminal domain BF28_1809 PF00551 Formyl transferase BF28_1810 PF01029 NusB family BF28_1810 PF01189 16S rRNA methyltransferase RsmB/F BF28_1811 PF04055 Radical SAM superfamily BF28_1813 PF03793 PASTA domain BF28_1813 PF00069 Protein kinase domain BF28_1814 PF03193 RsgA GTPase BF28_1814 PF16745 RsgA N-terminal domain BF28_1815 PF00834 Ribulose-phosphate 3 epimerase family BF28_1816 PF04263 Thiamin pyrophosphokinase, catalytic domain BF28_1816 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BF28_1817 PF00830 Ribosomal L28 family BF28_1818 PF03780 Asp23 family, cell envelope-related function BF28_1819 PF02734 DAK2 domain BF28_1819 PF13684 Dihydroxyacetone kinase family BF28_1820 PF17191 RecG wedge domain BF28_1820 PF00271 Helicase conserved C-terminal domain BF28_1820 PF00270 DEAD/DEAH box helicase BF28_1821 PF03061 Thioesterase superfamily BF28_1822 PF02504 Fatty acid synthesis protein BF28_1823 PF00698 Acyl transferase domain BF28_1825 PF00550 Phosphopantetheine attachment site BF28_1826 PF14622 Ribonuclease-III-like BF28_1826 PF00035 Double-stranded RNA binding motif BF28_1827 PF02463 RecF/RecN/SMC N terminal domain BF28_1827 PF06470 SMC proteins Flexible Hinge Domain BF28_1828 PF02881 SRP54-type protein, helical bundle domain BF28_1828 PF00448 SRP54-type protein, GTPase domain BF28_1829 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BF28_1830 PF02978 Signal peptide binding domain BF28_1830 PF02881 SRP54-type protein, helical bundle domain BF28_1830 PF00448 SRP54-type protein, GTPase domain BF28_1831 PF00886 Ribosomal protein S16 BF28_1833 PF05239 PRC-barrel domain BF28_1833 PF01782 RimM N-terminal domain BF28_1834 PF01746 tRNA (Guanine-1)-methyltransferase BF28_1835 PF01245 Ribosomal protein L19 BF28_1836 PF10502 Signal peptidase, peptidase S26 BF28_1837 PF01926 50S ribosome-binding GTPase BF28_1838 PF01351 Ribonuclease HII BF28_1839 PF00549 CoA-ligase BF28_1839 PF08442 ATP-grasp domain BF28_1840 PF02629 CoA binding domain BF28_1840 PF00549 CoA-ligase BF28_1841 PF02481 DNA recombination-mediator protein A BF28_1842 PF01396 Topoisomerase DNA binding C4 zinc finger BF28_1842 PF01131 DNA topoisomerase BF28_1842 PF01751 Toprim domain BF28_1843 PF01134 Glucose inhibited division protein A BF28_1844 PF00589 Phage integrase family BF28_1844 PF02899 Phage integrase, N-terminal SAM-like domain BF28_1845 PF00227 Proteasome subunit BF28_1846 PF07724 AAA domain (Cdc48 subfamily) BF28_1846 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1846 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_1847 PF06018 CodY GAF-like domain BF28_1847 PF08222 CodY helix-turn-helix domain BF28_1848 PF00318 Ribosomal protein S2 BF28_1849 PF00889 Elongation factor TS BF28_1850 PF00696 Amino acid kinase family BF28_1851 PF01765 Ribosome recycling factor BF28_1852 PF01255 Putative undecaprenyl diphosphate synthase BF28_1854 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF28_1854 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF28_1854 PF13288 DXP reductoisomerase C-terminal domain BF28_1855 PF17820 PDZ domain BF28_1855 PF02163 Peptidase family M50 BF28_1856 PF03129 Anticodon binding domain BF28_1856 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_1856 PF04073 Aminoacyl-tRNA editing domain BF28_1857 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF28_1857 PF02811 PHP domain BF28_1857 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF28_1857 PF11490 DNA polymerase III polC-type N-terminus II BF28_1857 PF14579 Helix-hairpin-helix motif BF28_1857 PF00929 Exonuclease BF28_1857 PF14480 DNA polymerase III polC-type N-terminus I BF28_1858 PF02576 RimP N-terminal domain BF28_1858 PF17384 RimP C-terminal SH3 domain BF28_1859 PF13184 NusA-like KH domain BF28_1859 PF00575 S1 RNA binding domain BF28_1859 PF08529 NusA N-terminal domain BF28_186 PF00521 DNA gyrase/topoisomerase IV, subunit A BF28_186 PF03989 DNA gyrase C-terminal domain, beta-propeller BF28_1860 PF04296 Protein of unknown function (DUF448) BF28_1861 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF28_1862 PF00009 Elongation factor Tu GTP binding domain BF28_1862 PF11987 Translation-initiation factor 2 BF28_1862 PF04760 Translation initiation factor IF-2, N-terminal region BF28_1863 PF04456 Protein of unknown function (DUF503) BF28_1864 PF02033 Ribosome-binding factor A BF28_1865 PF16198 tRNA pseudouridylate synthase B C-terminal domain BF28_1865 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF28_1866 PF01687 Riboflavin kinase BF28_1866 PF06574 FAD synthetase BF28_1867 PF00312 Ribosomal protein S15 BF28_1868 PF00575 S1 RNA binding domain BF28_1868 PF03725 3' exoribonuclease family, domain 2 BF28_1868 PF01138 3' exoribonuclease family, domain 1 BF28_1868 PF00013 KH domain BF28_1868 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF28_1869 PF01522 Polysaccharide deacetylase BF28_187 PF00204 DNA gyrase B BF28_187 PF01751 Toprim domain BF28_187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_187 PF00986 DNA gyrase B subunit, carboxyl terminus BF28_1870 PF05193 Peptidase M16 inactive domain BF28_1870 PF00675 Insulinase (Peptidase family M16) BF28_1871 PF05239 PRC-barrel domain BF28_1872 PF16924 Dipicolinate synthase subunit A N-terminal domain BF28_1872 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF28_1873 PF02441 Flavoprotein BF28_1874 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF28_1874 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF28_1875 PF00696 Amino acid kinase family BF28_1875 PF13840 ACT domain BF28_1876 PF00701 Dihydrodipicolinate synthetase family BF28_1877 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF28_1877 PF00753 Metallo-beta-lactamase superfamily BF28_1877 PF17770 Ribonuclease J C-terminal domain BF28_1878 PF00574 Clp protease BF28_1879 PF14035 YlzJ-like protein BF28_188 PF02463 RecF/RecN/SMC N terminal domain BF28_1880 PF09397 Ftsk gamma domain BF28_1880 PF17854 FtsK alpha domain BF28_1880 PF01580 FtsK/SpoIIIE family BF28_1881 PF07702 UTRA domain BF28_1881 PF00392 Bacterial regulatory proteins, gntR family BF28_1886 PF05193 Peptidase M16 inactive domain BF28_1887 PF00675 Insulinase (Peptidase family M16) BF28_1887 PF05193 Peptidase M16 inactive domain BF28_1889 PF11588 Protein of unknown function (DUF3243) BF28_1890 PF11868 Protein of unknown function (DUF3388) BF28_1891 PF13464 Domain of unknown function (DUF4115) BF28_1892 PF01066 CDP-alcohol phosphatidyltransferase BF28_1893 PF02464 Competence-damaged protein BF28_1893 PF18146 Damage-inducible protein CinA KH domain BF28_1893 PF00994 Probable molybdopterin binding domain BF28_1894 PF00154 recA bacterial DNA recombination protein BF28_1895 PF00154 recA bacterial DNA recombination protein BF28_1896 PF01966 HD domain BF28_1896 PF00013 KH domain BF28_1896 PF12072 Domain of unknown function (DUF3552) BF28_1897 PF13277 YmdB-like protein BF28_1898 PF04232 Stage V sporulation protein S (SpoVS) BF28_1899 PF01244 Membrane dipeptidase (Peptidase family M19) BF28_19 PF14089 KinB-signalling pathway activation in sporulation BF28_190 PF02767 DNA polymerase III beta subunit, central domain BF28_190 PF02768 DNA polymerase III beta subunit, C-terminal domain BF28_190 PF00712 DNA polymerase III beta subunit, N-terminal domain BF28_1900 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF28_1900 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF28_1900 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BF28_1901 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_1902 PF00919 Uncharacterized protein family UPF0004 BF28_1902 PF01938 TRAM domain BF28_1902 PF04055 Radical SAM superfamily BF28_1903 PF06133 Control of competence regulator ComK, YlbF/YmcA BF28_1904 PF10628 Outer spore coat protein E (CotE) BF28_1905 PF05192 MutS domain III BF28_1905 PF00488 MutS domain V BF28_1905 PF05188 MutS domain II BF28_1905 PF01624 MutS domain I BF28_1905 PF05190 MutS family domain IV BF28_1906 PF01119 DNA mismatch repair protein, C-terminal domain BF28_1906 PF08676 MutL C terminal dimerisation domain BF28_191 PF00308 Bacterial dnaA protein BF28_191 PF11638 DnaA N-terminal domain BF28_191 PF08299 Bacterial dnaA protein helix-turn-helix BF28_1910 PF00551 Formyl transferase BF28_1910 PF02911 Formyl transferase, C-terminal domain BF28_1913 PF02796 Helix-turn-helix domain of resolvase BF28_1913 PF00665 Integrase core domain BF28_1916 PF00350 Dynamin family BF28_1917 PF00884 Sulfatase BF28_1918 PF03275 UDP-galactopyranose mutase BF28_1919 PF07486 Cell Wall Hydrolase BF28_192 PF00468 Ribosomal protein L34 BF28_1920 PF00082 Subtilase family BF28_1921 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BF28_1923 PF00392 Bacterial regulatory proteins, gntR family BF28_1923 PF00155 Aminotransferase class I and II BF28_1924 PF03788 LrgA family BF28_1925 PF10787 Uncharacterised protein from bacillus cereus group BF28_1927 PF03707 Bacterial signalling protein N terminal repeat BF28_1927 PF00990 Diguanylate cyclase, GGDEF domain BF28_1927 PF00563 EAL domain BF28_1928 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_193 PF00825 Ribonuclease P BF28_1933 PF07687 Peptidase dimerisation domain BF28_1933 PF01546 Peptidase family M20/M25/M40 BF28_1934 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_1934 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BF28_1935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF28_1935 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF28_1936 PF12833 Helix-turn-helix domain BF28_1936 PF02805 Metal binding domain of Ada BF28_1937 PF03372 Endonuclease/Exonuclease/phosphatase family BF28_1938 PF01497 Periplasmic binding protein BF28_1939 PF01032 FecCD transport family BF28_194 PF02096 60Kd inner membrane protein BF28_1940 PF01032 FecCD transport family BF28_1941 PF00005 ABC transporter BF28_1942 PF00756 Putative esterase BF28_1944 PF02583 Metal-sensitive transcriptional repressor BF28_1945 PF00403 Heavy-metal-associated domain BF28_1946 PF00403 Heavy-metal-associated domain BF28_1947 PF00216 Bacterial DNA-binding protein BF28_1948 PF01226 Formate/nitrite transporter BF28_1949 PF10518 TAT (twin-arginine translocation) pathway signal sequence BF28_1949 PF00149 Calcineurin-like phosphoesterase BF28_195 PF14804 Jag N-terminus BF28_195 PF01424 R3H domain BF28_1950 PF00704 Glycosyl hydrolases family 18 BF28_1950 PF00041 Fibronectin type III domain BF28_1951 PF00324 Amino acid permease BF28_1954 PF04238 Protein of unknown function (DUF420) BF28_1955 PF00465 Iron-containing alcohol dehydrogenase BF28_1956 PF00455 DeoR C terminal sensor domain BF28_1956 PF08220 DeoR-like helix-turn-helix domain BF28_1957 PF00294 pfkB family carbohydrate kinase BF28_1958 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF28_1958 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_1959 PF06725 3D domain BF28_1959 PF01476 LysM domain BF28_196 PF01926 50S ribosome-binding GTPase BF28_196 PF10396 GTP-binding protein TrmE N-terminus BF28_196 PF12631 MnmE helical domain BF28_1962 PF17209 Hfq protein BF28_1965 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1965 PF17866 AAA lid domain BF28_1967 PF03458 UPF0126 domain BF28_1968 PF13167 GTP-binding GTPase N-terminal BF28_1968 PF01926 50S ribosome-binding GTPase BF28_1968 PF16360 GTP-binding GTPase Middle Region BF28_1969 PF06838 Methionine gamma-lyase BF28_197 PF01134 Glucose inhibited division protein A BF28_197 PF13932 GidA associated domain BF28_1970 PF13411 MerR HTH family regulatory protein BF28_1971 PF00120 Glutamine synthetase, catalytic domain BF28_1971 PF03951 Glutamine synthetase, beta-Grasp domain BF28_1972 PF00589 Phage integrase family BF28_1972 PF02899 Phage integrase, N-terminal SAM-like domain BF28_198 PF02527 rRNA small subunit methyltransferase G BF28_199 PF02195 ParB-like nuclease domain BF28_199 PF17762 HTH domain found in ParB protein BF28_1990 PF02511 Thymidylate synthase complementing protein BF28_1997 PF08281 Sigma-70, region 4 BF28_2 PF00491 Arginase family BF28_20 PF17898 Spore germination GerD central core domain BF28_200 PF13614 AAA domain BF28_201 PF17762 HTH domain found in ParB protein BF28_201 PF02195 ParB-like nuclease domain BF28_202 PF06866 Protein of unknown function (DUF1256) BF28_2027 PF13457 GW (Gly-Tryp) dipeptide domain BF28_2027 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BF28_2029 PF00005 ABC transporter BF28_203 PF00924 Mechanosensitive ion channel BF28_2034 PF18593 CdiI immunity protein BF28_2036 PF03551 Transcriptional regulator PadR-like family BF28_2039 PF00717 Peptidase S24-like BF28_2039 PF01726 LexA DNA binding domain BF28_204 PF06107 Bacterial protein of unknown function (DUF951) BF28_2040 PF00239 Resolvase, N terminal domain BF28_2041 PF05979 Bacterial protein of unknown function (DUF896) BF28_2042 PF00149 Calcineurin-like phosphoesterase BF28_2042 PF02872 5'-nucleotidase, C-terminal domain BF28_2044 PF00005 ABC transporter BF28_2045 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2046 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2047 PF00456 Transketolase, thiamine diphosphate binding domain BF28_2047 PF02780 Transketolase, C-terminal domain BF28_2047 PF02779 Transketolase, pyrimidine binding domain BF28_2048 PF10747 Sporulation inhibitor of replication protein SirA BF28_2049 PF03672 Uncharacterised protein family (UPF0154) BF28_205 PF01926 50S ribosome-binding GTPase BF28_205 PF06071 Protein of unknown function (DUF933) BF28_2050 PF00005 ABC transporter BF28_2050 PF00664 ABC transporter transmembrane region BF28_2051 PF00664 ABC transporter transmembrane region BF28_2051 PF00005 ABC transporter BF28_2054 PF01471 Putative peptidoglycan binding domain BF28_2054 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_2055 PF00128 Alpha amylase, catalytic domain BF28_2055 PF02903 Alpha amylase, N-terminal ig-like domain BF28_2055 PF00395 S-layer homology domain BF28_2057 PF01925 Sulfite exporter TauE/SafE BF28_2059 PF00293 NUDIX domain BF28_2059 PF13344 Haloacid dehalogenase-like hydrolase BF28_206 PF01250 Ribosomal protein S6 BF28_2060 PF04172 LrgB-like family BF28_2061 PF03788 LrgA family BF28_2062 PF03466 LysR substrate binding domain BF28_2062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2064 PF00005 ABC transporter BF28_2069 PF02683 Cytochrome C biogenesis protein transmembrane region BF28_207 PF00436 Single-strand binding protein family BF28_2070 PF07301 Protein of unknown function (DUF1453) BF28_2074 PF11084 Protein of unknown function (DUF2621) BF28_2078 PF08241 Methyltransferase domain BF28_2079 PF09021 HutP BF28_208 PF01084 Ribosomal protein S18 BF28_2080 PF00221 Aromatic amino acid lyase BF28_2081 PF17392 Urocanase C-terminal domain BF28_2081 PF01175 Urocanase Rossmann-like domain BF28_2081 PF17391 Urocanase N-terminal domain BF28_2082 PF01979 Amidohydrolase family BF28_2083 PF00491 Arginase family BF28_2084 PF02559 CarD-like/TRCF domain BF28_2085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF28_2086 PF01645 Conserved region in glutamate synthase BF28_2087 PF00474 Sodium:solute symporter family BF28_2088 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2089 PF01738 Dienelactone hydrolase family BF28_209 PF09991 Predicted membrane protein (DUF2232) BF28_2090 PF00989 PAS fold BF28_2090 PF00512 His Kinase A (phospho-acceptor) domain BF28_2090 PF13426 PAS domain BF28_2090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2090 PF13188 PAS domain BF28_2092 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_2092 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_2098 PF05532 CsbD-like BF28_21 PF10609 NUBPL iron-transfer P-loop NTPase BF28_210 PF02272 DHHA1 domain BF28_210 PF01368 DHH family BF28_2101 PF13193 AMP-binding enzyme C-terminal domain BF28_2101 PF00501 AMP-binding enzyme BF28_2102 PF02632 BioY family BF28_2103 PF00501 AMP-binding enzyme BF28_2103 PF13193 AMP-binding enzyme C-terminal domain BF28_2104 PF00108 Thiolase, N-terminal domain BF28_2104 PF02803 Thiolase, C-terminal domain BF28_2106 PF13344 Haloacid dehalogenase-like hydrolase BF28_2106 PF00293 NUDIX domain BF28_2107 PF01411 tRNA synthetases class II (A) BF28_2107 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_2107 PF02272 DHHA1 domain BF28_2109 PF07690 Major Facilitator Superfamily BF28_211 PF01281 Ribosomal protein L9, N-terminal domain BF28_211 PF03948 Ribosomal protein L9, C-terminal domain BF28_2111 PF08179 Small acid-soluble spore protein P family BF28_2113 PF01522 Polysaccharide deacetylase BF28_2115 PF00694 Aconitase C-terminal domain BF28_2115 PF00330 Aconitase family (aconitate hydratase) BF28_2116 PF00005 ABC transporter BF28_2116 PF00664 ABC transporter transmembrane region BF28_2118 PF00578 AhpC/TSA family BF28_2119 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF28_2119 PF14579 Helix-hairpin-helix motif BF28_2119 PF01336 OB-fold nucleic acid binding domain BF28_2119 PF00929 Exonuclease BF28_2119 PF02811 PHP domain BF28_2119 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF28_2119 PF11490 DNA polymerase III polC-type N-terminus II BF28_212 PF03796 DnaB-like helicase C terminal domain BF28_212 PF00772 DnaB-like helicase N terminal domain BF28_2120 PF13040 Fur-regulated basic protein B BF28_2121 PF08177 Small acid-soluble spore protein N family BF28_2123 PF01476 LysM domain BF28_2123 PF00704 Glycosyl hydrolases family 18 BF28_2124 PF03061 Thioesterase superfamily BF28_2125 PF01521 Iron-sulphur cluster biosynthesis BF28_2126 PF02660 Glycerol-3-phosphate acyltransferase BF28_2127 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF28_2127 PF03477 ATP cone domain BF28_2128 PF04055 Radical SAM superfamily BF28_2129 PF00072 Response regulator receiver domain BF28_2129 PF00486 Transcriptional regulatory protein, C terminal BF28_213 PF00709 Adenylosuccinate synthetase BF28_2130 PF13180 PDZ domain BF28_2131 PF13380 CoA binding domain BF28_2132 PF00986 DNA gyrase B subunit, carboxyl terminus BF28_2132 PF01751 Toprim domain BF28_2132 PF00204 DNA gyrase B BF28_2132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2133 PF00521 DNA gyrase/topoisomerase IV, subunit A BF28_2133 PF03989 DNA gyrase C-terminal domain, beta-propeller BF28_2134 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_2134 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_2136 PF00005 ABC transporter BF28_2136 PF13732 Domain of unknown function (DUF4162) BF28_2138 PF08281 Sigma-70, region 4 BF28_2138 PF04542 Sigma-70 region 2 BF28_2140 PF03816 Cell envelope-related transcriptional attenuator domain BF28_2141 PF00375 Sodium:dicarboxylate symporter family BF28_2142 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2143 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2145 PF08241 Methyltransferase domain BF28_2154 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_2155 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_2155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF28_2155 PF01568 Molydopterin dinucleotide binding domain BF28_2155 PF00037 4Fe-4S binding domain BF28_2155 PF00384 Molybdopterin oxidoreductase BF28_2156 PF07849 Protein of unknown function (DUF1641) BF28_2157 PF10057 Uncharacterized conserved protein (DUF2294) BF28_2158 PF02634 FdhD/NarQ family BF28_2159 PF06463 Molybdenum Cofactor Synthesis C BF28_2159 PF04055 Radical SAM superfamily BF28_2160 PF01226 Formate/nitrite transporter BF28_2161 PF00899 ThiF family BF28_2162 PF00994 Probable molybdopterin binding domain BF28_2162 PF03453 MoeA N-terminal region (domain I and II) BF28_2162 PF03454 MoeA C-terminal region (domain IV) BF28_2163 PF02391 MoaE protein BF28_2165 PF10609 NUBPL iron-transfer P-loop NTPase BF28_2168 PF06961 Protein of unknown function (DUF1294) BF28_2169 PF00892 EamA-like transporter family BF28_2170 PF02681 Divergent PAP2 family BF28_2171 PF13249 Squalene-hopene cyclase N-terminal domain BF28_2171 PF13243 Squalene-hopene cyclase C-terminal domain BF28_2172 PF14151 YfhD-like protein BF28_2174 PF00171 Aldehyde dehydrogenase family BF28_2176 PF00474 Sodium:solute symporter family BF28_2177 PF01156 Inosine-uridine preferring nucleoside hydrolase BF28_2179 PF00206 Lyase BF28_2179 PF14698 Argininosuccinate lyase C-terminal BF28_218 PF00072 Response regulator receiver domain BF28_218 PF00486 Transcriptional regulatory protein, C terminal BF28_2181 PF00106 short chain dehydrogenase BF28_2183 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_2185 PF00293 NUDIX domain BF28_2187 PF00258 Flavodoxin BF28_2189 PF00313 'Cold-shock' DNA-binding domain BF28_219 PF00672 HAMP domain BF28_219 PF00512 His Kinase A (phospho-acceptor) domain BF28_219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_219 PF13426 PAS domain BF28_2192 PF13037 Domain of unknown function (DUF3898) BF28_2192 PF13039 Protein of unknown function (DUF3900) BF28_2194 PF04294 VanW like protein BF28_2195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2198 PF02308 MgtC family BF28_2199 PF18496 Collagenase G catalytic helper subdomain BF28_2199 PF08453 Peptidase family M9 N-terminal BF28_2199 PF01752 Collagenase BF28_22 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_220 PF07435 YycH protein BF28_2200 PF00378 Enoyl-CoA hydratase/isomerase BF28_2201 PF00535 Glycosyl transferase family 2 BF28_2202 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF28_2203 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_2207 PF01565 FAD binding domain BF28_2207 PF02913 FAD linked oxidases, C-terminal domain BF28_2208 PF01758 Sodium Bile acid symporter family BF28_221 PF09648 YycH protein BF28_2212 PF04299 Putative FMN-binding domain BF28_2214 PF18801 response regulator aspartate phosphatase H, N terminal BF28_2215 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BF28_2216 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2216 PF00107 Zinc-binding dehydrogenase BF28_2217 PF01022 Bacterial regulatory protein, arsR family BF28_2218 PF01494 FAD binding domain BF28_222 PF00753 Metallo-beta-lactamase superfamily BF28_2222 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_2225 PF03466 LysR substrate binding domain BF28_2225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2226 PF07690 Major Facilitator Superfamily BF28_2228 PF00144 Beta-lactamase BF28_2229 PF08439 Oligopeptidase F BF28_2229 PF01432 Peptidase family M3 BF28_223 PF13180 PDZ domain BF28_2230 PF00797 N-acetyltransferase BF28_2231 PF01713 Smr domain BF28_2231 PF00488 MutS domain V BF28_2236 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2236 PF00107 Zinc-binding dehydrogenase BF28_2237 PF03466 LysR substrate binding domain BF28_2237 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2239 PF10901 Protein of unknown function (DUF2690) BF28_2243 PF13170 Protein of unknown function (DUF4003) BF28_2244 PF02567 Phenazine biosynthesis-like protein BF28_2245 PF05675 Protein of unknown function (DUF817) BF28_2246 PF01032 FecCD transport family BF28_2247 PF01032 FecCD transport family BF28_2248 PF01497 Periplasmic binding protein BF28_225 PF02590 Predicted SPOUT methyltransferase BF28_2251 PF03600 Citrate transporter BF28_2252 PF08830 Protein of unknown function (DUF1806) BF28_2253 PF02585 GlcNAc-PI de-N-acetylase BF28_2259 PF07690 Major Facilitator Superfamily BF28_2260 PF00324 Amino acid permease BF28_2261 PF00107 Zinc-binding dehydrogenase BF28_2261 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2262 PF00753 Metallo-beta-lactamase superfamily BF28_2264 PF17863 AAA lid domain BF28_2264 PF07726 ATPase family associated with various cellular activities (AAA) BF28_2274 PF00144 Beta-lactamase BF28_2280 PF00753 Metallo-beta-lactamase superfamily BF28_2281 PF00753 Metallo-beta-lactamase superfamily BF28_2284 PF03063 Prismane/CO dehydrogenase family BF28_2287 PF13732 Domain of unknown function (DUF4162) BF28_2287 PF00005 ABC transporter BF28_2288 PF01061 ABC-2 type transporter BF28_2289 PF05656 Protein of unknown function (DUF805) BF28_229 PF01432 Peptidase family M3 BF28_229 PF08439 Oligopeptidase F BF28_2298 PF00440 Bacterial regulatory proteins, tetR family BF28_230 PF00478 IMP dehydrogenase / GMP reductase domain BF28_2300 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BF28_2300 PF00535 Glycosyl transferase family 2 BF28_2301 PF04542 Sigma-70 region 2 BF28_2302 PF12791 Anti-sigma factor N-terminus BF28_2303 PF01522 Polysaccharide deacetylase BF28_2303 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF28_2304 PF01022 Bacterial regulatory protein, arsR family BF28_2307 PF01494 FAD binding domain BF28_2308 PF01638 HxlR-like helix-turn-helix BF28_2309 PF02525 Flavodoxin-like fold BF28_2310 PF00501 AMP-binding enzyme BF28_2310 PF13193 AMP-binding enzyme C-terminal domain BF28_2311 PF13302 Acetyltransferase (GNAT) domain BF28_2314 PF02567 Phenazine biosynthesis-like protein BF28_232 PF00271 Helicase conserved C-terminal domain BF28_232 PF00270 DEAD/DEAH box helicase BF28_232 PF03880 DbpA RNA binding domain BF28_2321 PF00248 Aldo/keto reductase family BF28_2322 PF01638 HxlR-like helix-turn-helix BF28_2323 PF01638 HxlR-like helix-turn-helix BF28_2325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_2325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_2326 PF07702 UTRA domain BF28_2326 PF00392 Bacterial regulatory proteins, gntR family BF28_2327 PF01638 HxlR-like helix-turn-helix BF28_2328 PF03960 ArsC family BF28_2334 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2335 PF03928 Haem-degrading BF28_2337 PF07690 Major Facilitator Superfamily BF28_2338 PF00248 Aldo/keto reductase family BF28_234 PF03006 Haemolysin-III related BF28_2341 PF01638 HxlR-like helix-turn-helix BF28_2343 PF01872 RibD C-terminal domain BF28_2343 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_2344 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) BF28_2346 PF00672 HAMP domain BF28_2346 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_2346 PF12729 Four helix bundle sensory module for signal transduction BF28_2348 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_2348 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_2348 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_2348 PF03413 Peptidase propeptide and YPEB domain BF28_2349 PF00106 short chain dehydrogenase BF28_235 PF16363 GDP-mannose 4,6 dehydratase BF28_2351 PF14765 Polyketide synthase dehydratase BF28_2351 PF00550 Phosphopantetheine attachment site BF28_2351 PF00698 Acyl transferase domain BF28_2351 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2351 PF00107 Zinc-binding dehydrogenase BF28_2351 PF16197 Ketoacyl-synthetase C-terminal extension BF28_2351 PF02801 Beta-ketoacyl synthase, C-terminal domain BF28_2351 PF08659 KR domain BF28_2351 PF00109 Beta-ketoacyl synthase, N-terminal domain BF28_2353 PF00296 Luciferase-like monooxygenase BF28_2354 PF00107 Zinc-binding dehydrogenase BF28_2354 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2355 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF28_2355 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF28_2356 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF28_2356 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF28_2357 PF00456 Transketolase, thiamine diphosphate binding domain BF28_2357 PF02780 Transketolase, C-terminal domain BF28_2357 PF02779 Transketolase, pyrimidine binding domain BF28_2358 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_2358 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF28_2359 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF28_2360 PF02447 GntP family permease BF28_2361 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_2361 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_2362 PF10282 Lactonase, 7-bladed beta-propeller BF28_2363 PF06906 Protein of unknown function (DUF1272) BF28_2364 PF00805 Pentapeptide repeats (8 copies) BF28_2365 PF00892 EamA-like transporter family BF28_2367 PF01370 NAD dependent epimerase/dehydratase family BF28_2369 PF08484 C-methyltransferase C-terminal domain BF28_2369 PF08421 Putative zinc binding domain BF28_237 PF02293 AmiS/UreI family transporter BF28_2370 PF16363 GDP-mannose 4,6 dehydratase BF28_2371 PF00483 Nucleotidyl transferase BF28_2373 PF13411 MerR HTH family regulatory protein BF28_2374 PF01595 Cyclin M transmembrane N-terminal domain BF28_2374 PF03471 Transporter associated domain BF28_2374 PF00571 CBS domain BF28_2376 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_2380 PF07690 Major Facilitator Superfamily BF28_2382 PF08241 Methyltransferase domain BF28_2386 PF01594 AI-2E family transporter BF28_2387 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF28_2387 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF28_2387 PF13288 DXP reductoisomerase C-terminal domain BF28_2388 PF00579 tRNA synthetases class I (W and Y) BF28_239 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF28_239 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF28_2390 PF00005 ABC transporter BF28_2390 PF12704 MacB-like periplasmic core domain BF28_2390 PF02687 FtsX-like permease family BF28_2392 PF14602 Hexapeptide repeat of succinyl-transferase BF28_2392 PF12464 Maltose acetyltransferase BF28_2393 PF07690 Major Facilitator Superfamily BF28_2394 PF07690 Major Facilitator Superfamily BF28_2395 PF00480 ROK family BF28_2396 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2397 PF00293 NUDIX domain BF28_2397 PF13344 Haloacid dehalogenase-like hydrolase BF28_24 PF00380 Ribosomal protein S9/S16 BF28_240 PF02898 Nitric oxide synthase, oxygenase domain BF28_2403 PF13419 Haloacid dehalogenase-like hydrolase BF28_2408 PF00005 ABC transporter BF28_241 PF02028 BCCT, betaine/carnitine/choline family transporter BF28_2412 PF00224 Pyruvate kinase, barrel domain BF28_2412 PF00391 PEP-utilising enzyme, mobile domain BF28_2412 PF02887 Pyruvate kinase, alpha/beta domain BF28_2414 PF00881 Nitroreductase family BF28_2415 PF01638 HxlR-like helix-turn-helix BF28_2417 PF13393 Histidyl-tRNA synthetase BF28_2417 PF03129 Anticodon binding domain BF28_2418 PF00072 Response regulator receiver domain BF28_2418 PF00196 Bacterial regulatory proteins, luxR family BF28_2419 PF00144 Beta-lactamase BF28_242 PF07690 Major Facilitator Superfamily BF28_2420 PF04073 Aminoacyl-tRNA editing domain BF28_2422 PF01381 Helix-turn-helix BF28_2425 PF07739 TipAS antibiotic-recognition domain BF28_2425 PF13411 MerR HTH family regulatory protein BF28_243 PF07694 5TMR of 5TMR-LYT BF28_243 PF06580 Histidine kinase BF28_243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_243 PF13492 GAF domain BF28_2430 PF03606 C4-dicarboxylate anaerobic carrier BF28_2431 PF03737 Aldolase/RraA BF28_2434 PF02361 Cobalt transport protein BF28_2435 PF00005 ABC transporter BF28_2437 PF14256 YwiC-like protein BF28_244 PF00072 Response regulator receiver domain BF28_244 PF04397 LytTr DNA-binding domain BF28_2441 PF02525 Flavodoxin-like fold BF28_2443 PF02667 Short chain fatty acid transporter BF28_2444 PF01289 Thiol-activated cytolysin BF28_2444 PF17440 Thiol-activated cytolysin beta sandwich domain BF28_2447 PF07690 Major Facilitator Superfamily BF28_2448 PF01047 MarR family BF28_2449 PF12697 Alpha/beta hydrolase family BF28_245 PF03788 LrgA family BF28_2450 PF07690 Major Facilitator Superfamily BF28_2451 PF14044 NETI protein BF28_2458 PF07690 Major Facilitator Superfamily BF28_2459 PF08361 MAATS-type transcriptional repressor, C-terminal region BF28_2459 PF00440 Bacterial regulatory proteins, tetR family BF28_246 PF04172 LrgB-like family BF28_2461 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_2461 PF01471 Putative peptidoglycan binding domain BF28_2461 PF01476 LysM domain BF28_2463 PF01804 Penicillin amidase BF28_2464 PF04740 LXG domain of WXG superfamily BF28_2464 PF14436 Bacterial EndoU nuclease BF28_2467 PF12833 Helix-turn-helix domain BF28_2467 PF01497 Periplasmic binding protein BF28_2468 PF07883 Cupin domain BF28_247 PF01594 AI-2E family transporter BF28_2471 PF04542 Sigma-70 region 2 BF28_2471 PF08281 Sigma-70, region 4 BF28_2474 PF00266 Aminotransferase class-V BF28_2475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF28_2475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF28_2475 PF01842 ACT domain BF28_2478 PF02016 LD-carboxypeptidase N-terminal domain BF28_2478 PF17676 LD-carboxypeptidase C-terminal domain BF28_248 PF01625 Peptide methionine sulfoxide reductase BF28_248 PF01641 SelR domain BF28_2483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2483 PF03466 LysR substrate binding domain BF28_2484 PF02754 Cysteine-rich domain BF28_2485 PF02589 LUD domain BF28_2485 PF11870 Domain of unknown function (DUF3390) BF28_2485 PF13183 4Fe-4S dicluster domain BF28_2486 PF02589 LUD domain BF28_2487 PF07690 Major Facilitator Superfamily BF28_2488 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_2488 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_2489 PF04299 Putative FMN-binding domain BF28_249 PF00873 AcrB/AcrD/AcrF family BF28_2490 PF00583 Acetyltransferase (GNAT) family BF28_2491 PF01047 MarR family BF28_2493 PF00072 Response regulator receiver domain BF28_2493 PF00486 Transcriptional regulatory protein, C terminal BF28_2494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2494 PF00672 HAMP domain BF28_2494 PF00512 His Kinase A (phospho-acceptor) domain BF28_2497 PF02687 FtsX-like permease family BF28_2498 PF00005 ABC transporter BF28_25 PF00572 Ribosomal protein L13 BF28_250 PF00440 Bacterial regulatory proteins, tetR family BF28_2501 PF04072 Leucine carboxyl methyltransferase BF28_2502 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_2502 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_2504 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BF28_2505 PF00753 Metallo-beta-lactamase superfamily BF28_2508 PF01381 Helix-turn-helix BF28_251 PF00535 Glycosyl transferase family 2 BF28_2510 PF00144 Beta-lactamase BF28_2512 PF00291 Pyridoxal-phosphate dependent enzyme BF28_2517 PF01810 LysE type translocator BF28_2521 PF07690 Major Facilitator Superfamily BF28_2522 PF00258 Flavodoxin BF28_2522 PF00067 Cytochrome P450 BF28_2522 PF00667 FAD binding domain BF28_2522 PF00175 Oxidoreductase NAD-binding domain BF28_2523 PF12802 MarR family BF28_2527 PF00144 Beta-lactamase BF28_2529 PF12833 Helix-turn-helix domain BF28_2529 PF02805 Metal binding domain of Ada BF28_2531 PF01609 Transposase DDE domain BF28_2533 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2539 PF00012 Hsp70 protein BF28_2543 PF01022 Bacterial regulatory protein, arsR family BF28_2544 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2545 PF01758 Sodium Bile acid symporter family BF28_2546 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF28_2549 PF00072 Response regulator receiver domain BF28_2549 PF08769 Sporulation initiation factor Spo0A C terminal BF28_255 PF00005 ABC transporter BF28_255 PF12848 ABC transporter BF28_2551 PF02687 FtsX-like permease family BF28_2552 PF00005 ABC transporter BF28_2553 PF12996 DUF based on E. rectale Gene description (DUF3880) BF28_2554 PF00561 alpha/beta hydrolase fold BF28_2559 PF01040 UbiA prenyltransferase family BF28_256 PF00535 Glycosyl transferase family 2 BF28_2561 PF13091 PLD-like domain BF28_2564 PF02559 CarD-like/TRCF domain BF28_2567 PF10842 Protein of unknown function (DUF2642) BF28_2569 PF10057 Uncharacterized conserved protein (DUF2294) BF28_2570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF28_2570 PF00361 Proton-conducting membrane transporter BF28_2571 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BF28_2575 PF11181 Heat induced stress protein YflT BF28_2578 PF01544 CorA-like Mg2+ transporter protein BF28_2579 PF06628 Catalase-related immune-responsive BF28_2579 PF00199 Catalase BF28_258 PF03061 Thioesterase superfamily BF28_2580 PF00149 Calcineurin-like phosphoesterase BF28_2580 PF17936 Bacterial Ig domain BF28_2580 PF02872 5'-nucleotidase, C-terminal domain BF28_2581 PF13520 Amino acid permease BF28_2582 PF01554 MatE BF28_2583 PF00355 Rieske [2Fe-2S] domain BF28_2583 PF01266 FAD dependent oxidoreductase BF28_2584 PF00144 Beta-lactamase BF28_2586 PF01235 Sodium:alanine symporter family BF28_2588 PF04960 Glutaminase BF28_2589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2590 PF08664 YcbB domain BF28_2590 PF00072 Response regulator receiver domain BF28_2591 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_2592 PF03845 Spore germination protein BF28_2593 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_2594 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_2594 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_2595 PF13520 Amino acid permease BF28_2596 PF12826 Helix-hairpin-helix motif BF28_2596 PF01541 GIY-YIG catalytic domain BF28_2596 PF08459 UvrC Helix-hairpin-helix N-terminal BF28_2596 PF02151 UvrB/uvrC motif BF28_2597 PF13333 Integrase core domain BF28_2597 PF00665 Integrase core domain BF28_2598 PF01381 Helix-turn-helix BF28_2599 PF17763 Glutaminase/Asparaginase C-terminal domain BF28_2599 PF00710 Asparaginase, N-terminal BF28_26 PF01416 tRNA pseudouridine synthase BF28_260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_2600 PF10415 Fumarase C C-terminus BF28_2600 PF00206 Lyase BF28_2602 PF00005 ABC transporter BF28_2605 PF13411 MerR HTH family regulatory protein BF28_2605 PF07739 TipAS antibiotic-recognition domain BF28_2607 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2607 PF00107 Zinc-binding dehydrogenase BF28_2607 PF13823 Alcohol dehydrogenase GroES-associated BF28_2608 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_2609 PF11553 Protein of unknown function (DUF3231) BF28_261 PF03458 UPF0126 domain BF28_2610 PF10710 Protein of unknown function (DUF2512) BF28_2611 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_2613 PF00324 Amino acid permease BF28_2614 PF01810 LysE type translocator BF28_2615 PF08892 YqcI/YcgG family BF28_2617 PF07875 Coat F domain BF28_2620 PF00753 Metallo-beta-lactamase superfamily BF28_2622 PF00391 PEP-utilising enzyme, mobile domain BF28_2622 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF28_2623 PF00440 Bacterial regulatory proteins, tetR family BF28_2631 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_2631 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BF28_2631 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_2634 PF07454 Stage II sporulation protein P (SpoIIP) BF28_2636 PF03932 CutC family BF28_2637 PF10502 Signal peptidase, peptidase S26 BF28_2638 PF09339 IclR helix-turn-helix domain BF28_2638 PF01614 Bacterial transcriptional regulator BF28_2639 PF02682 Carboxyltransferase domain, subdomain C and D BF28_264 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF28_2640 PF02626 Carboxyltransferase domain, subdomain A and B BF28_2641 PF03746 LamB/YcsF family BF28_2644 PF01470 Pyroglutamyl peptidase BF28_2645 PF02146 Sir2 family BF28_2648 PF10502 Signal peptidase, peptidase S26 BF28_265 PF07690 Major Facilitator Superfamily BF28_2650 PF00293 NUDIX domain BF28_2652 PF00376 MerR family regulatory protein BF28_2652 PF09278 MerR, DNA binding BF28_2653 PF08713 DNA alkylation repair enzyme BF28_2655 PF00324 Amino acid permease BF28_2656 PF13302 Acetyltransferase (GNAT) domain BF28_2657 PF01925 Sulfite exporter TauE/SafE BF28_266 PF04397 LytTr DNA-binding domain BF28_266 PF00072 Response regulator receiver domain BF28_2663 PF00561 alpha/beta hydrolase fold BF28_2664 PF00072 Response regulator receiver domain BF28_2664 PF00486 Transcriptional regulatory protein, C terminal BF28_2665 PF00672 HAMP domain BF28_2665 PF00512 His Kinase A (phospho-acceptor) domain BF28_2666 PF13031 Protein of unknown function (DUF3892) BF28_2667 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BF28_2668 PF00155 Aminotransferase class I and II BF28_2668 PF00392 Bacterial regulatory proteins, gntR family BF28_2669 PF00892 EamA-like transporter family BF28_267 PF02554 Carbon starvation protein CstA BF28_267 PF13722 5TM C-terminal transporter carbon starvation CstA BF28_2672 PF00583 Acetyltransferase (GNAT) family BF28_2673 PF12833 Helix-turn-helix domain BF28_2678 PF00005 ABC transporter BF28_2679 PF16363 GDP-mannose 4,6 dehydratase BF28_268 PF04328 Selenoprotein, putative BF28_2680 PF00392 Bacterial regulatory proteins, gntR family BF28_2681 PF00005 ABC transporter BF28_2684 PF00293 NUDIX domain BF28_2686 PF03764 Elongation factor G, domain IV BF28_2686 PF14492 Elongation Factor G, domain II BF28_2686 PF00679 Elongation factor G C-terminus BF28_2686 PF00009 Elongation factor Tu GTP binding domain BF28_2687 PF01047 MarR family BF28_2688 PF00881 Nitroreductase family BF28_269 PF07694 5TMR of 5TMR-LYT BF28_269 PF00990 Diguanylate cyclase, GGDEF domain BF28_2690 PF17863 AAA lid domain BF28_2690 PF07726 ATPase family associated with various cellular activities (AAA) BF28_2694 PF00144 Beta-lactamase BF28_2696 PF01810 LysE type translocator BF28_2698 PF01979 Amidohydrolase family BF28_2698 PF13382 Adenine deaminase C-terminal domain BF28_2699 PF01047 MarR family BF28_27 PF02361 Cobalt transport protein BF28_270 PF08543 Phosphomethylpyrimidine kinase BF28_2702 PF00005 ABC transporter BF28_2703 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2704 PF06628 Catalase-related immune-responsive BF28_2704 PF00199 Catalase BF28_2705 PF00202 Aminotransferase class-III BF28_2707 PF00535 Glycosyl transferase family 2 BF28_2708 PF00535 Glycosyl transferase family 2 BF28_271 PF07730 Histidine kinase BF28_271 PF13185 GAF domain BF28_2711 PF00535 Glycosyl transferase family 2 BF28_2713 PF07690 Major Facilitator Superfamily BF28_2716 PF07726 ATPase family associated with various cellular activities (AAA) BF28_2716 PF17863 AAA lid domain BF28_272 PF00196 Bacterial regulatory proteins, luxR family BF28_272 PF00072 Response regulator receiver domain BF28_2721 PF12681 Glyoxalase-like domain BF28_2722 PF13302 Acetyltransferase (GNAT) domain BF28_2726 PF00072 Response regulator receiver domain BF28_2726 PF04397 LytTr DNA-binding domain BF28_2728 PF10086 YhfC intramembrane metalloprotease BF28_273 PF02525 Flavodoxin-like fold BF28_2731 PF13443 Cro/C1-type HTH DNA-binding domain BF28_2732 PF11188 Protein of unknown function (DUF2975) BF28_2733 PF00245 Alkaline phosphatase BF28_2734 PF00487 Fatty acid desaturase BF28_2735 PF01139 tRNA-splicing ligase RtcB BF28_2736 PF00324 Amino acid permease BF28_2737 PF01614 Bacterial transcriptional regulator BF28_2737 PF09339 IclR helix-turn-helix domain BF28_2738 PF01546 Peptidase family M20/M25/M40 BF28_2739 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_2739 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_274 PF00027 Cyclic nucleotide-binding domain BF28_2740 PF01472 PUA domain BF28_2740 PF00696 Amino acid kinase family BF28_2741 PF00171 Aldehyde dehydrogenase family BF28_2742 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_2742 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_2746 PF03992 Antibiotic biosynthesis monooxygenase BF28_275 PF13419 Haloacid dehalogenase-like hydrolase BF28_2752 PF01791 DeoC/LacD family aldolase BF28_2754 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_2754 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_2755 PF00325 Bacterial regulatory proteins, crp family BF28_2755 PF04198 Putative sugar-binding domain BF28_2756 PF00005 ABC transporter BF28_2757 PF02653 Branched-chain amino acid transport system / permease component BF28_2758 PF02653 Branched-chain amino acid transport system / permease component BF28_2759 PF13407 Periplasmic binding protein domain BF28_276 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_2760 PF06039 Malate:quinone oxidoreductase (Mqo) BF28_2764 PF02954 Bacterial regulatory protein, Fis family BF28_2764 PF13426 PAS domain BF28_2764 PF00158 Sigma-54 interaction domain BF28_2765 PF13193 AMP-binding enzyme C-terminal domain BF28_2765 PF00501 AMP-binding enzyme BF28_2766 PF00378 Enoyl-CoA hydratase/isomerase BF28_2769 PF06725 3D domain BF28_2769 PF01476 LysM domain BF28_277 PF04204 Homoserine O-succinyltransferase BF28_2772 PF01636 Phosphotransferase enzyme family BF28_2776 PF00793 DAHP synthetase I family BF28_2776 PF01817 Chorismate mutase type II BF28_2777 PF01264 Chorismate synthase BF28_2778 PF00155 Aminotransferase class I and II BF28_2779 PF01842 ACT domain BF28_2779 PF02153 Prephenate dehydrogenase BF28_278 PF00742 Homoserine dehydrogenase BF28_278 PF01842 ACT domain BF28_278 PF03447 Homoserine dehydrogenase, NAD binding domain BF28_2780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF28_2782 PF00440 Bacterial regulatory proteins, tetR family BF28_2782 PF16295 Tetracyclin repressor-like, C-terminal domain BF28_2783 PF03176 MMPL family BF28_2786 PF00005 ABC transporter BF28_2786 PF12848 ABC transporter BF28_2787 PF00884 Sulfatase BF28_2788 PF03741 Integral membrane protein TerC family BF28_2789 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF28_2791 PF03611 PTS system sugar-specific permease component BF28_2792 PF01522 Polysaccharide deacetylase BF28_2797 PF12867 DinB superfamily BF28_2798 PF13536 Putative multidrug resistance efflux transporter BF28_28 PF00005 ABC transporter BF28_280 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF28_280 PF00356 Bacterial regulatory proteins, lacI family BF28_2802 PF02522 Aminoglycoside 3-N-acetyltransferase BF28_2807 PF13344 Haloacid dehalogenase-like hydrolase BF28_2807 PF00293 NUDIX domain BF28_281 PF13472 GDSL-like Lipase/Acylhydrolase family BF28_2811 PF00005 ABC transporter BF28_2812 PF09084 NMT1/THI5 like BF28_2813 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2814 PF00296 Luciferase-like monooxygenase BF28_2816 PF01594 AI-2E family transporter BF28_282 PF00005 ABC transporter BF28_2826 PF00005 ABC transporter BF28_283 PF12679 ABC-2 family transporter protein BF28_2830 PF03630 Fumble BF28_2831 PF07977 FabA-like domain BF28_2832 PF00155 Aminotransferase class I and II BF28_2839 PF08241 Methyltransferase domain BF28_284 PF03167 Uracil DNA glycosylase superfamily BF28_2841 PF01156 Inosine-uridine preferring nucleoside hydrolase BF28_2842 PF04226 Transglycosylase associated protein BF28_2846 PF07690 Major Facilitator Superfamily BF28_2847 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2847 PF12793 Sugar transport-related sRNA regulator N-term BF28_2848 PF13171 Protein of unknown function (DUF4004) BF28_2849 PF04519 Polymer-forming cytoskeletal BF28_285 PF12823 Domain of unknown function (DUF3817) BF28_2851 PF07690 Major Facilitator Superfamily BF28_2857 PF07552 Spore Coat Protein X and V domain BF28_2858 PF02645 Uncharacterised protein, DegV family COG1307 BF28_2861 PF08439 Oligopeptidase F BF28_2861 PF01432 Peptidase family M3 BF28_2862 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF28_2865 PF01048 Phosphorylase superfamily BF28_2866 PF13419 Haloacid dehalogenase-like hydrolase BF28_287 PF00860 Permease family BF28_2870 PF00072 Response regulator receiver domain BF28_2870 PF00486 Transcriptional regulatory protein, C terminal BF28_2871 PF00512 His Kinase A (phospho-acceptor) domain BF28_2871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2871 PF00989 PAS fold BF28_2871 PF16736 Single Cache-like BF28_2872 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF28_2872 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF28_2876 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_2877 PF01965 DJ-1/PfpI family BF28_288 PF02254 TrkA-N domain BF28_288 PF07885 Ion channel BF28_2880 PF13378 Enolase C-terminal domain-like BF28_2880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF28_2881 PF00877 NlpC/P60 family BF28_2881 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BF28_2882 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2883 PF00958 GMP synthase C terminal domain BF28_2883 PF13673 Acetyltransferase (GNAT) domain BF28_2883 PF03352 Methyladenine glycosylase BF28_2883 PF13302 Acetyltransferase (GNAT) domain BF28_2883 PF00117 Glutamine amidotransferase class-I BF28_2884 PF04914 DltD protein BF28_2887 PF09335 SNARE associated Golgi protein BF28_2888 PF01966 HD domain BF28_2889 PF01636 Phosphotransferase enzyme family BF28_2891 PF08876 Domain of unknown function (DUF1836) BF28_2894 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_2894 PF04324 BFD-like [2Fe-2S] binding domain BF28_2896 PF04324 BFD-like [2Fe-2S] binding domain BF28_2896 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_2897 PF13188 PAS domain BF28_2897 PF02954 Bacterial regulatory protein, Fis family BF28_2897 PF00158 Sigma-54 interaction domain BF28_2898 PF01266 FAD dependent oxidoreductase BF28_2899 PF05544 Proline racemase BF28_29 PF00005 ABC transporter BF28_290 PF04241 Protein of unknown function (DUF423) BF28_2900 PF05544 Proline racemase BF28_2901 PF00701 Dihydrodipicolinate synthetase family BF28_2902 PF00171 Aldehyde dehydrogenase family BF28_2903 PF01235 Sodium:alanine symporter family BF28_2904 PF02627 Carboxymuconolactone decarboxylase family BF28_2906 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF28_2906 PF18416 N-acetylglucosamine binding protein domain 2 BF28_2907 PF02833 DHHA2 domain BF28_2907 PF01368 DHH family BF28_291 PF09671 Spore coat protein (Spore_GerQ) BF28_2914 PF00270 DEAD/DEAH box helicase BF28_2914 PF16124 RecQ zinc-binding BF28_2914 PF00570 HRDC domain BF28_2914 PF09382 RQC domain BF28_2914 PF00271 Helicase conserved C-terminal domain BF28_2915 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BF28_2918 PF13538 UvrD-like helicase C-terminal domain BF28_292 PF07486 Cell Wall Hydrolase BF28_2927 PF00753 Metallo-beta-lactamase superfamily BF28_2927 PF13567 Domain of unknown function (DUF4131) BF28_2927 PF03772 Competence protein BF28_2929 PF04237 YjbR BF28_293 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_293 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_2930 PF08241 Methyltransferase domain BF28_2931 PF10990 Protein of unknown function (DUF2809) BF28_2934 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF28_2934 PF18416 N-acetylglucosamine binding protein domain 2 BF28_2935 PF13673 Acetyltransferase (GNAT) domain BF28_2936 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF28_2939 PF00574 Clp protease BF28_2940 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF28_2941 PF00005 ABC transporter BF28_2941 PF00571 CBS domain BF28_2942 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2947 PF00293 NUDIX domain BF28_2949 PF00485 Phosphoribulokinase / Uridine kinase family BF28_295 PF01515 Phosphate acetyl/butaryl transferase BF28_2950 PF13673 Acetyltransferase (GNAT) domain BF28_2950 PF04229 GrpB protein BF28_2951 PF00106 short chain dehydrogenase BF28_2953 PF00676 Dehydrogenase E1 component BF28_2954 PF02779 Transketolase, pyrimidine binding domain BF28_2954 PF02780 Transketolase, C-terminal domain BF28_2955 PF00364 Biotin-requiring enzyme BF28_2955 PF02817 e3 binding domain BF28_2955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_2956 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_2956 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_296 PF03099 Biotin/lipoate A/B protein ligase family BF28_2960 PF08220 DeoR-like helix-turn-helix domain BF28_2960 PF00455 DeoR C terminal sensor domain BF28_2961 PF13302 Acetyltransferase (GNAT) domain BF28_2964 PF02954 Bacterial regulatory protein, Fis family BF28_2964 PF00158 Sigma-54 interaction domain BF28_2964 PF01590 GAF domain BF28_2969 PF13344 Haloacid dehalogenase-like hydrolase BF28_2969 PF00293 NUDIX domain BF28_2970 PF00440 Bacterial regulatory proteins, tetR family BF28_2970 PF08359 YsiA-like protein, C-terminal region BF28_2971 PF00266 Aminotransferase class-V BF28_2972 PF04199 Putative cyclase BF28_2973 PF03301 Tryptophan 2,3-dioxygenase BF28_2976 PF07486 Cell Wall Hydrolase BF28_2976 PF01471 Putative peptidoglycan binding domain BF28_2977 PF14620 YpeB sporulation BF28_2977 PF03413 Peptidase propeptide and YPEB domain BF28_2978 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF28_2981 PF06081 Aromatic acid exporter family member 1 BF28_2986 PF00561 alpha/beta hydrolase fold BF28_2987 PF00392 Bacterial regulatory proteins, gntR family BF28_2987 PF00155 Aminotransferase class I and II BF28_2988 PF00892 EamA-like transporter family BF28_2989 PF11638 DnaA N-terminal domain BF28_2989 PF00308 Bacterial dnaA protein BF28_2989 PF08299 Bacterial dnaA protein helix-turn-helix BF28_299 PF07293 Protein of unknown function (DUF1450) BF28_2990 PF00344 SecY translocase BF28_2991 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2996 PF03413 Peptidase propeptide and YPEB domain BF28_2996 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_2996 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_2996 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_2997 PF03714 Bacterial pullanase-associated domain BF28_2997 PF00128 Alpha amylase, catalytic domain BF28_2997 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF28_2998 PF01569 PAP2 superfamily BF28_3 PF02595 Glycerate kinase family BF28_30 PF01196 Ribosomal protein L17 BF28_300 PF01032 FecCD transport family BF28_3003 PF13419 Haloacid dehalogenase-like hydrolase BF28_3008 PF01266 FAD dependent oxidoreductase BF28_301 PF01032 FecCD transport family BF28_3016 PF01541 GIY-YIG catalytic domain BF28_3018 PF02673 Bacitracin resistance protein BacA BF28_302 PF00005 ABC transporter BF28_3021 PF12867 DinB superfamily BF28_3023 PF08000 Bacterial PH domain BF28_3024 PF01734 Patatin-like phospholipase BF28_3028 PF09234 Domain of unknown function (DUF1963) BF28_303 PF01497 Periplasmic binding protein BF28_3031 PF00293 NUDIX domain BF28_3032 PF02767 DNA polymerase III beta subunit, central domain BF28_3032 PF02768 DNA polymerase III beta subunit, C-terminal domain BF28_3032 PF00712 DNA polymerase III beta subunit, N-terminal domain BF28_3033 PF09297 NADH pyrophosphatase zinc ribbon domain BF28_3033 PF00293 NUDIX domain BF28_3034 PF07690 Major Facilitator Superfamily BF28_3039 PF00293 NUDIX domain BF28_304 PF01966 HD domain BF28_3042 PF01270 Glycosyl hydrolases family 8 BF28_3043 PF00892 EamA-like transporter family BF28_3044 PF00155 Aminotransferase class I and II BF28_3044 PF00392 Bacterial regulatory proteins, gntR family BF28_3048 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_305 PF01361 Tautomerase enzyme BF28_3052 PF07690 Major Facilitator Superfamily BF28_3054 PF00293 NUDIX domain BF28_3054 PF09297 NADH pyrophosphatase zinc ribbon domain BF28_3055 PF00144 Beta-lactamase BF28_3057 PF03965 Penicillinase repressor BF28_3058 PF01609 Transposase DDE domain BF28_306 PF02163 Peptidase family M50 BF28_3061 PF00005 ABC transporter BF28_3062 PF01965 DJ-1/PfpI family BF28_3064 PF00239 Resolvase, N terminal domain BF28_3064 PF02796 Helix-turn-helix domain of resolvase BF28_307 PF08741 YwhD family BF28_3073 PF01569 PAP2 superfamily BF28_3074 PF00107 Zinc-binding dehydrogenase BF28_3074 PF08240 Alcohol dehydrogenase GroES-like domain BF28_3075 PF04229 GrpB protein BF28_3077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3077 PF00512 His Kinase A (phospho-acceptor) domain BF28_308 PF00905 Penicillin binding protein transpeptidase domain BF28_308 PF00912 Transglycosylase BF28_3080 PF00005 ABC transporter BF28_3080 PF12558 ATP-binding cassette cobalt transporter BF28_3081 PF07155 ECF-type riboflavin transporter, S component BF28_3082 PF01177 Asp/Glu/Hydantoin racemase BF28_3083 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF28_3085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3085 PF00512 His Kinase A (phospho-acceptor) domain BF28_3085 PF00989 PAS fold BF28_3085 PF13188 PAS domain BF28_3085 PF13426 PAS domain BF28_3088 PF00067 Cytochrome P450 BF28_309 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_3090 PF07561 Domain of Unknown Function (DUF1540) BF28_3091 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_3093 PF00067 Cytochrome P450 BF28_31 PF01000 RNA polymerase Rpb3/RpoA insert domain BF28_31 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF28_31 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF28_310 PF13411 MerR HTH family regulatory protein BF28_3102 PF10668 Phage terminase small subunit BF28_3102 PF03592 Terminase small subunit BF28_311 PF07690 Major Facilitator Superfamily BF28_3111 PF03070 TENA/THI-4/PQQC family BF28_3112 PF01820 D-ala D-ala ligase N-terminus BF28_3112 PF07478 D-ala D-ala ligase C-terminus BF28_3113 PF00155 Aminotransferase class I and II BF28_3113 PF00392 Bacterial regulatory proteins, gntR family BF28_3114 PF03447 Homoserine dehydrogenase, NAD binding domain BF28_3114 PF01842 ACT domain BF28_3114 PF00742 Homoserine dehydrogenase BF28_3118 PF02687 FtsX-like permease family BF28_3119 PF00005 ABC transporter BF28_312 PF17284 Spermidine synthase tetramerisation domain BF28_3124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3125 PF00486 Transcriptional regulatory protein, C terminal BF28_3125 PF00072 Response regulator receiver domain BF28_3126 PF03069 Acetamidase/Formamidase family BF28_3127 PF07486 Cell Wall Hydrolase BF28_3128 PF01921 tRNA synthetases class I (K) BF28_313 PF00491 Arginase family BF28_3130 PF08450 SMP-30/Gluconolactonase/LRE-like region BF28_3132 PF01225 Mur ligase family, catalytic domain BF28_3132 PF02875 Mur ligase family, glutamate ligase domain BF28_3132 PF08245 Mur ligase middle domain BF28_3133 PF02875 Mur ligase family, glutamate ligase domain BF28_3133 PF08245 Mur ligase middle domain BF28_3133 PF01225 Mur ligase family, catalytic domain BF28_3136 PF08241 Methyltransferase domain BF28_3137 PF04239 Protein of unknown function (DUF421) BF28_3138 PF00107 Zinc-binding dehydrogenase BF28_3138 PF08240 Alcohol dehydrogenase GroES-like domain BF28_3141 PF00392 Bacterial regulatory proteins, gntR family BF28_3141 PF00155 Aminotransferase class I and II BF28_3144 PF12833 Helix-turn-helix domain BF28_3150 PF13847 Methyltransferase domain BF28_3151 PF07690 Major Facilitator Superfamily BF28_3152 PF00376 MerR family regulatory protein BF28_3152 PF09278 MerR, DNA binding BF28_3153 PF00144 Beta-lactamase BF28_3159 PF03413 Peptidase propeptide and YPEB domain BF28_3159 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_3159 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_3159 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_316 PF17676 LD-carboxypeptidase C-terminal domain BF28_316 PF02016 LD-carboxypeptidase N-terminal domain BF28_3164 PF01048 Phosphorylase superfamily BF28_3165 PF01966 HD domain BF28_3166 PF00072 Response regulator receiver domain BF28_3166 PF00486 Transcriptional regulatory protein, C terminal BF28_3167 PF00512 His Kinase A (phospho-acceptor) domain BF28_3167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3168 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_3168 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_3169 PF05163 DinB family BF28_317 PF09148 Domain of unknown function (DUF1934) BF28_3171 PF00485 Phosphoribulokinase / Uridine kinase family BF28_3172 PF00583 Acetyltransferase (GNAT) family BF28_3176 PF13193 AMP-binding enzyme C-terminal domain BF28_3176 PF00501 AMP-binding enzyme BF28_3176 PF16177 Acetyl-coenzyme A synthetase N-terminus BF28_3177 PF01039 Carboxyl transferase domain BF28_3178 PF00378 Enoyl-CoA hydratase/isomerase BF28_3179 PF00682 HMGL-like BF28_318 PF00750 tRNA synthetases class I (R) BF28_318 PF05746 DALR anticodon binding domain BF28_318 PF03485 Arginyl tRNA synthetase N terminal domain BF28_3180 PF00364 Biotin-requiring enzyme BF28_3181 PF02785 Biotin carboxylase C-terminal domain BF28_3181 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_3181 PF00289 Biotin carboxylase, N-terminal domain BF28_3182 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_3182 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_3182 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_3185 PF08359 YsiA-like protein, C-terminal region BF28_3185 PF00440 Bacterial regulatory proteins, tetR family BF28_3187 PF00005 ABC transporter BF28_319 PF04542 Sigma-70 region 2 BF28_319 PF08281 Sigma-70, region 4 BF28_3190 PF00581 Rhodanese-like domain BF28_3191 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_3193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_3193 PF00672 HAMP domain BF28_3193 PF02743 Cache domain BF28_3194 PF03707 Bacterial signalling protein N terminal repeat BF28_3194 PF00990 Diguanylate cyclase, GGDEF domain BF28_3194 PF00563 EAL domain BF28_3196 PF00440 Bacterial regulatory proteins, tetR family BF28_3197 PF07968 Leukocidin/Hemolysin toxin family BF28_3198 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_3198 PF00395 S-layer homology domain BF28_32 PF00411 Ribosomal protein S11 BF28_3200 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_3202 PF01385 Probable transposase BF28_3202 PF12323 Helix-turn-helix domain BF28_3202 PF07282 Putative transposase DNA-binding domain BF28_3203 PF01381 Helix-turn-helix BF28_3204 PF18801 response regulator aspartate phosphatase H, N terminal BF28_3206 PF00149 Calcineurin-like phosphoesterase BF28_3206 PF02872 5'-nucleotidase, C-terminal domain BF28_3210 PF04962 KduI/IolB family BF28_3211 PF01116 Fructose-bisphosphate aldolase class-II BF28_3212 PF01261 Xylose isomerase-like TIM barrel BF28_3213 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3213 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3213 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3214 PF00171 Aldehyde dehydrogenase family BF28_3215 PF00294 pfkB family carbohydrate kinase BF28_3216 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_3216 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_3217 PF07690 Major Facilitator Superfamily BF28_3218 PF00356 Bacterial regulatory proteins, lacI family BF28_3219 PF01569 PAP2 superfamily BF28_3222 PF03717 Penicillin-binding Protein dimerisation domain BF28_3222 PF00905 Penicillin binding protein transpeptidase domain BF28_3224 PF08281 Sigma-70, region 4 BF28_3224 PF04542 Sigma-70 region 2 BF28_3228 PF07687 Peptidase dimerisation domain BF28_3228 PF01546 Peptidase family M20/M25/M40 BF28_323 PF04389 Peptidase family M28 BF28_323 PF02225 PA domain BF28_3233 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BF28_3234 PF00300 Histidine phosphatase superfamily (branch 1) BF28_3235 PF12802 MarR family BF28_3236 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3236 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3236 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3239 PF03848 Tellurite resistance protein TehB BF28_3239 PF09313 Domain of unknown function (DUF1971) BF28_324 PF01473 Putative cell wall binding repeat BF28_324 PF02324 Glycosyl hydrolase family 70 BF28_3240 PF12704 MacB-like periplasmic core domain BF28_3240 PF02687 FtsX-like permease family BF28_3240 PF00005 ABC transporter BF28_3243 PF17932 Tetracyclin repressor-like, C-terminal domain BF28_3243 PF00440 Bacterial regulatory proteins, tetR family BF28_3245 PF00270 DEAD/DEAH box helicase BF28_3245 PF00271 Helicase conserved C-terminal domain BF28_3247 PF00753 Metallo-beta-lactamase superfamily BF28_3247 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF28_325 PF00557 Metallopeptidase family M24 BF28_3250 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3251 PF00266 Aminotransferase class-V BF28_3252 PF02660 Glycerol-3-phosphate acyltransferase BF28_3253 PF01869 BadF/BadG/BcrA/BcrD ATPase family BF28_3254 PF03702 Anhydro-N-acetylmuramic acid kinase BF28_3256 PF02378 Phosphotransferase system, EIIC BF28_3258 PF02638 Glycosyl hydrolase-like 10 BF28_326 PF00005 ABC transporter BF28_3263 PF08281 Sigma-70, region 4 BF28_3263 PF04542 Sigma-70 region 2 BF28_3263 PF12680 SnoaL-like domain BF28_3266 PF02824 TGS domain BF28_3266 PF04607 Region found in RelA / SpoT proteins BF28_3266 PF13291 ACT domain BF28_3273 PF01381 Helix-turn-helix BF28_3273 PF07883 Cupin domain BF28_3274 PF01810 LysE type translocator BF28_3277 PF00005 ABC transporter BF28_3277 PF00664 ABC transporter transmembrane region BF28_3278 PF00005 ABC transporter BF28_3278 PF00664 ABC transporter transmembrane region BF28_328 PF07730 Histidine kinase BF28_328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3281 PF03475 3-alpha domain BF28_3281 PF03473 MOSC domain BF28_3282 PF03466 LysR substrate binding domain BF28_3282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3285 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF28_3285 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF28_3286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3286 PF03466 LysR substrate binding domain BF28_3287 PF07690 Major Facilitator Superfamily BF28_3288 PF01047 MarR family BF28_329 PF00072 Response regulator receiver domain BF28_329 PF00196 Bacterial regulatory proteins, luxR family BF28_3293 PF00313 'Cold-shock' DNA-binding domain BF28_3295 PF13302 Acetyltransferase (GNAT) domain BF28_33 PF00416 Ribosomal protein S13/S18 BF28_3305 PF00583 Acetyltransferase (GNAT) family BF28_3308 PF00302 Chloramphenicol acetyltransferase BF28_3310 PF03176 MMPL family BF28_3311 PF02403 Seryl-tRNA synthetase N-terminal domain BF28_3311 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_3312 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF28_3312 PF00753 Metallo-beta-lactamase superfamily BF28_3319 PF13649 Methyltransferase domain BF28_332 PF00563 EAL domain BF28_332 PF00990 Diguanylate cyclase, GGDEF domain BF28_332 PF03707 Bacterial signalling protein N terminal repeat BF28_3321 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3321 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3321 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3324 PF07690 Major Facilitator Superfamily BF28_3325 PF12146 Serine aminopeptidase, S33 BF28_3327 PF00005 ABC transporter BF28_3328 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_3328 PF02824 TGS domain BF28_3328 PF03129 Anticodon binding domain BF28_3328 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_3329 PF00849 RNA pseudouridylate synthase BF28_3329 PF01479 S4 domain BF28_333 PF03851 UV-endonuclease UvdE BF28_3330 PF16291 Domain of unknown function (DUF4937 BF28_3333 PF01235 Sodium:alanine symporter family BF28_3334 PF00082 Subtilase family BF28_3335 PF05163 DinB family BF28_3337 PF00216 Bacterial DNA-binding protein BF28_334 PF13091 PLD-like domain BF28_3340 PF07690 Major Facilitator Superfamily BF28_3341 PF03621 MbtH-like protein BF28_3342 PF00668 Condensation domain BF28_3342 PF00501 AMP-binding enzyme BF28_3342 PF00975 Thioesterase domain BF28_3342 PF13193 AMP-binding enzyme C-terminal domain BF28_3342 PF00550 Phosphopantetheine attachment site BF28_3343 PF00857 Isochorismatase family BF28_3343 PF00550 Phosphopantetheine attachment site BF28_3344 PF00501 AMP-binding enzyme BF28_3344 PF13193 AMP-binding enzyme C-terminal domain BF28_3345 PF00425 chorismate binding enzyme BF28_3346 PF00106 short chain dehydrogenase BF28_3347 PF07690 Major Facilitator Superfamily BF28_335 PF13183 4Fe-4S dicluster domain BF28_335 PF02754 Cysteine-rich domain BF28_3350 PF01022 Bacterial regulatory protein, arsR family BF28_3351 PF13476 AAA domain BF28_3352 PF12320 Type 5 capsule protein repressor C-terminal domain BF28_3352 PF00149 Calcineurin-like phosphoesterase BF28_3353 PF10763 Protein of unknown function (DUF2584) BF28_3355 PF00378 Enoyl-CoA hydratase/isomerase BF28_3356 PF01810 LysE type translocator BF28_3357 PF00171 Aldehyde dehydrogenase family BF28_3358 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF28_3358 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_3359 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_3359 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_3359 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_336 PF00108 Thiolase, N-terminal domain BF28_336 PF02803 Thiolase, C-terminal domain BF28_3361 PF03972 MmgE/PrpD family BF28_3362 PF00285 Citrate synthase, C-terminal domain BF28_3363 PF01521 Iron-sulphur cluster biosynthesis BF28_3364 PF07690 Major Facilitator Superfamily BF28_3365 PF00912 Transglycosylase BF28_3365 PF00905 Penicillin binding protein transpeptidase domain BF28_3369 PF10676 Spore germination protein gerPA/gerPF BF28_337 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF28_337 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF28_338 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_338 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_338 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_3388 PF00085 Thioredoxin BF28_3389 PF01569 PAP2 superfamily BF28_339 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_339 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_339 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_3390 PF16916 Dimerisation domain of Zinc Transporter BF28_3390 PF01545 Cation efflux family BF28_3391 PF07070 SpoOM protein BF28_3392 PF00069 Protein kinase domain BF28_3392 PF08239 Bacterial SH3 domain BF28_3394 PF14162 YozD-like protein BF28_3397 PF06855 YozE SAM-like fold BF28_3398 PF14122 YokU-like protein, putative antitoxin BF28_3399 PF12544 Lysine-2,3-aminomutase BF28_34 PF00444 Ribosomal protein L36 BF28_3400 PF00158 Sigma-54 interaction domain BF28_3400 PF13426 PAS domain BF28_3400 PF02954 Bacterial regulatory protein, Fis family BF28_3401 PF00583 Acetyltransferase (GNAT) family BF28_3402 PF01546 Peptidase family M20/M25/M40 BF28_3402 PF07687 Peptidase dimerisation domain BF28_3403 PF01144 Coenzyme A transferase BF28_3404 PF01144 Coenzyme A transferase BF28_3405 PF00202 Aminotransferase class-III BF28_3408 PF09385 Histidine kinase N terminal BF28_3409 PF07997 Protein of unknown function (DUF1694) BF28_341 PF05066 HB1, ASXL, restriction endonuclease HTH domain BF28_3410 PF00171 Aldehyde dehydrogenase family BF28_3411 PF03471 Transporter associated domain BF28_3411 PF01595 Cyclin M transmembrane N-terminal domain BF28_3411 PF00571 CBS domain BF28_3417 PF13520 Amino acid permease BF28_3418 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3419 PF00571 CBS domain BF28_3419 PF00005 ABC transporter BF28_342 PF06418 CTP synthase N-terminus BF28_342 PF00117 Glutamine amidotransferase class-I BF28_3422 PF03358 NADPH-dependent FMN reductase BF28_3425 PF10924 Protein of unknown function (DUF2711) BF28_3427 PF00144 Beta-lactamase BF28_343 PF10740 Domain of unknown function (DUF2529) BF28_3430 PF08240 Alcohol dehydrogenase GroES-like domain BF28_3430 PF00107 Zinc-binding dehydrogenase BF28_3431 PF01418 Helix-turn-helix domain, rpiR family BF28_3431 PF01380 SIS domain BF28_3432 PF00196 Bacterial regulatory proteins, luxR family BF28_3432 PF00072 Response regulator receiver domain BF28_3433 PF13185 GAF domain BF28_3433 PF07730 Histidine kinase BF28_3434 PF00924 Mechanosensitive ion channel BF28_3435 PF00011 Hsp20/alpha crystallin family BF28_3436 PF00293 NUDIX domain BF28_3437 PF00857 Isochorismatase family BF28_344 PF00072 Response regulator receiver domain BF28_3440 PF00881 Nitroreductase family BF28_3441 PF01063 Amino-transferase class IV BF28_3442 PF01497 Periplasmic binding protein BF28_3446 PF00733 Asparagine synthase BF28_3446 PF13537 Glutamine amidotransferase domain BF28_3447 PF00011 Hsp20/alpha crystallin family BF28_3448 PF02630 SCO1/SenC BF28_345 PF01116 Fructose-bisphosphate aldolase class-II BF28_3450 PF02645 Uncharacterised protein, DegV family COG1307 BF28_3452 PF00902 Sec-independent protein translocase protein (TatC) BF28_3453 PF02416 mttA/Hcf106 family BF28_3454 PF03006 Haemolysin-III related BF28_3455 PF01553 Acyltransferase BF28_3456 PF02525 Flavodoxin-like fold BF28_3457 PF05223 NTF2-like N-terminal transpeptidase domain BF28_3457 PF00905 Penicillin binding protein transpeptidase domain BF28_3457 PF03717 Penicillin-binding Protein dimerisation domain BF28_3458 PF00186 Dihydrofolate reductase BF28_3459 PF00303 Thymidylate synthase BF28_346 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF28_3461 PF00144 Beta-lactamase BF28_3461 PF07930 D-aminopeptidase, domain B BF28_3465 PF13419 Haloacid dehalogenase-like hydrolase BF28_3466 PF14005 YpjP-like protein BF28_3467 PF05975 Bacterial ABC transporter protein EcsB BF28_3468 PF00005 ABC transporter BF28_347 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF28_3471 PF00583 Acetyltransferase (GNAT) family BF28_3472 PF01980 tRNA-methyltransferase O BF28_3473 PF01177 Asp/Glu/Hydantoin racemase BF28_3474 PF00465 Iron-containing alcohol dehydrogenase BF28_3476 PF13419 Haloacid dehalogenase-like hydrolase BF28_3477 PF10997 Alternate to MurJ BF28_348 PF07497 Rho termination factor, RNA-binding domain BF28_348 PF07498 Rho termination factor, N-terminal domain BF28_348 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_3480 PF00209 Sodium:neurotransmitter symporter family BF28_349 PF01197 Ribosomal protein L31 BF28_3493 PF01580 FtsK/SpoIIIE family BF28_3493 PF12538 DNA transporter BF28_3497 PF01336 OB-fold nucleic acid binding domain BF28_3497 PF00152 tRNA synthetases class II (D, K and N) BF28_3498 PF08245 Mur ligase middle domain BF28_3498 PF02875 Mur ligase family, glutamate ligase domain BF28_3498 PF01225 Mur ligase family, catalytic domain BF28_35 PF01176 Translation initiation factor 1A / IF-1 BF28_350 PF00265 Thymidine kinase BF28_3501 PF00133 tRNA synthetases class I (I, L, M and V) BF28_3501 PF08264 Anticodon-binding domain of tRNA BF28_3504 PF05746 DALR anticodon binding domain BF28_3504 PF03485 Arginyl tRNA synthetase N terminal domain BF28_3504 PF00750 tRNA synthetases class I (R) BF28_3505 PF04445 Putative SAM-dependent methyltransferase BF28_3506 PF06491 Disulphide isomerase BF28_3508 PF13769 Virulence factor BF28_3508 PF08712 Scaffold protein Nfu/NifU N terminal BF28_3509 PF01494 FAD binding domain BF28_351 PF03462 PCRF domain BF28_351 PF00472 RF-1 domain BF28_3511 PF00436 Single-strand binding protein family BF28_3514 PF16326 ABC transporter C-terminal domain BF28_3514 PF12848 ABC transporter BF28_3514 PF00005 ABC transporter BF28_3515 PF01966 HD domain BF28_352 PF13847 Methyltransferase domain BF28_352 PF17827 PrmC N-terminal domain BF28_3522 PF04232 Stage V sporulation protein S (SpoVS) BF28_3529 PF01814 Hemerythrin HHE cation binding domain BF28_3529 PF04405 Domain of Unknown function (DUF542) BF28_353 PF09551 Stage II sporulation protein R (spore_II_R) BF28_3530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF28_3530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF28_3530 PF04324 BFD-like [2Fe-2S] binding domain BF28_3530 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_3530 PF18267 Rubredoxin NAD+ reductase C-terminal domain BF28_3531 PF00355 Rieske [2Fe-2S] domain BF28_3532 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_3533 PF01903 CbiX BF28_3537 PF07690 Major Facilitator Superfamily BF28_3539 PF02391 MoaE protein BF28_3540 PF00994 Probable molybdopterin binding domain BF28_3540 PF03454 MoeA C-terminal region (domain IV) BF28_3540 PF03453 MoeA N-terminal region (domain I and II) BF28_3541 PF00899 ThiF family BF28_3542 PF06463 Molybdenum Cofactor Synthesis C BF28_3542 PF04055 Radical SAM superfamily BF28_3543 PF00325 Bacterial regulatory proteins, crp family BF28_3543 PF00027 Cyclic nucleotide-binding domain BF28_3544 PF02665 Nitrate reductase gamma subunit BF28_3545 PF02613 Nitrate reductase delta subunit BF28_3546 PF13247 4Fe-4S dicluster domain BF28_3546 PF14711 Respiratory nitrate reductase beta C-terminal BF28_3547 PF14710 Respiratory nitrate reductase alpha N-terminal BF28_3547 PF01568 Molydopterin dinucleotide binding domain BF28_3547 PF00384 Molybdopterin oxidoreductase BF28_355 PF01300 Telomere recombination BF28_355 PF03481 Putative GTP-binding controlling metal-binding BF28_3550 PF17863 AAA lid domain BF28_3550 PF07726 ATPase family associated with various cellular activities (AAA) BF28_3551 PF01882 Protein of unknown function DUF58 BF28_3552 PF11992 Domain of unknown function (DUF3488) BF28_3552 PF01841 Transglutaminase-like superfamily BF28_3552 PF13559 Domain of unknown function (DUF4129) BF28_3553 PF00255 Glutathione peroxidase BF28_3555 PF01613 Flavin reductase like domain BF28_3555 PF00258 Flavodoxin BF28_3558 PF04542 Sigma-70 region 2 BF28_3558 PF08281 Sigma-70, region 4 BF28_3559 PF00107 Zinc-binding dehydrogenase BF28_3559 PF08240 Alcohol dehydrogenase GroES-like domain BF28_356 PF02659 Putative manganese efflux pump BF28_3561 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3562 PF01261 Xylose isomerase-like TIM barrel BF28_3563 PF00270 DEAD/DEAH box helicase BF28_3563 PF00271 Helicase conserved C-terminal domain BF28_3565 PF01268 Formate--tetrahydrofolate ligase BF28_3566 PF01209 ubiE/COQ5 methyltransferase family BF28_3571 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF28_3584 PF00583 Acetyltransferase (GNAT) family BF28_3590 PF00155 Aminotransferase class I and II BF28_3590 PF00392 Bacterial regulatory proteins, gntR family BF28_3591 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_3591 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_3592 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF28_3595 PF01209 ubiE/COQ5 methyltransferase family BF28_3596 PF00842 Alanine racemase, C-terminal domain BF28_3596 PF01168 Alanine racemase, N-terminal domain BF28_3599 PF00300 Histidine phosphatase superfamily (branch 1) BF28_36 PF00557 Metallopeptidase family M24 BF28_360 PF01613 Flavin reductase like domain BF28_3600 PF01145 SPFH domain / Band 7 family BF28_3602 PF07690 Major Facilitator Superfamily BF28_3603 PF01425 Amidase BF28_3605 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_3607 PF07454 Stage II sporulation protein P (SpoIIP) BF28_361 PF07681 DoxX BF28_3610 PF01588 Putative tRNA binding domain BF28_3611 PF05525 Branched-chain amino acid transport protein BF28_3614 PF01595 Cyclin M transmembrane N-terminal domain BF28_3614 PF03471 Transporter associated domain BF28_3614 PF00571 CBS domain BF28_3615 PF04306 Protein of unknown function (DUF456) BF28_3616 PF13460 NAD(P)H-binding BF28_3619 PF13396 Phospholipase_D-nuclease N-terminal BF28_3619 PF13091 PLD-like domain BF28_362 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF28_3620 PF03061 Thioesterase superfamily BF28_3621 PF09323 Domain of unknown function (DUF1980) BF28_3622 PF03773 Predicted permease BF28_3624 PF01943 Polysaccharide biosynthesis protein BF28_3624 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_3625 PF09335 SNARE associated Golgi protein BF28_3626 PF00293 NUDIX domain BF28_3627 PF08757 CotH kinase protein BF28_3629 PF00300 Histidine phosphatase superfamily (branch 1) BF28_363 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF28_3631 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3632 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_3634 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF28_3634 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF28_3635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF28_3636 PF13460 NAD(P)H-binding BF28_3638 PF01297 Zinc-uptake complex component A periplasmic BF28_3638 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BF28_364 PF02502 Ribose/Galactose Isomerase BF28_3648 PF00583 Acetyltransferase (GNAT) family BF28_3649 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF28_3649 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF28_365 PF04260 Protein of unknown function (DUF436) BF28_3650 PF00248 Aldo/keto reductase family BF28_3652 PF01593 Flavin containing amine oxidoreductase BF28_3654 PF00296 Luciferase-like monooxygenase BF28_3657 PF00210 Ferritin-like domain BF28_366 PF00464 Serine hydroxymethyltransferase BF28_3661 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_3661 PF00672 HAMP domain BF28_3661 PF02743 Cache domain BF28_3662 PF03193 RsgA GTPase BF28_3666 PF07690 Major Facilitator Superfamily BF28_3667 PF00248 Aldo/keto reductase family BF28_3668 PF01022 Bacterial regulatory protein, arsR family BF28_3669 PF00082 Subtilase family BF28_3670 PF18277 AbrB C-terminal domain BF28_3670 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF28_3671 PF02687 FtsX-like permease family BF28_3672 PF02540 NAD synthase BF28_3673 PF00293 NUDIX domain BF28_3673 PF13344 Haloacid dehalogenase-like hydrolase BF28_3678 PF01734 Patatin-like phospholipase BF28_3680 PF00392 Bacterial regulatory proteins, gntR family BF28_3680 PF00155 Aminotransferase class I and II BF28_3681 PF01810 LysE type translocator BF28_3682 PF07690 Major Facilitator Superfamily BF28_3683 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_3684 PF01261 Xylose isomerase-like TIM barrel BF28_3687 PF00501 AMP-binding enzyme BF28_3687 PF13193 AMP-binding enzyme C-terminal domain BF28_3688 PF06276 Ferric iron reductase FhuF-like transporter BF28_3688 PF04183 IucA / IucC family BF28_3689 PF06276 Ferric iron reductase FhuF-like transporter BF28_3689 PF04183 IucA / IucC family BF28_369 PF03899 ATP synthase I chain BF28_3690 PF00583 Acetyltransferase (GNAT) family BF28_3691 PF02308 MgtC family BF28_3693 PF01522 Polysaccharide deacetylase BF28_3694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3694 PF00512 His Kinase A (phospho-acceptor) domain BF28_3694 PF00989 PAS fold BF28_3694 PF16736 Single Cache-like BF28_3695 PF00072 Response regulator receiver domain BF28_3695 PF00486 Transcriptional regulatory protein, C terminal BF28_3697 PF03816 Cell envelope-related transcriptional attenuator domain BF28_37 PF05191 Adenylate kinase, active site lid BF28_370 PF00119 ATP synthase A chain BF28_3700 PF00288 GHMP kinases N terminal domain BF28_3700 PF08544 GHMP kinases C terminal BF28_3701 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3702 PF00742 Homoserine dehydrogenase BF28_3702 PF01842 ACT domain BF28_3702 PF03447 Homoserine dehydrogenase, NAD binding domain BF28_3706 PF01522 Polysaccharide deacetylase BF28_3706 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BF28_3707 PF04439 Streptomycin adenylyltransferase BF28_3709 PF00106 short chain dehydrogenase BF28_371 PF00137 ATP synthase subunit C BF28_3710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3710 PF00512 His Kinase A (phospho-acceptor) domain BF28_3710 PF16736 Single Cache-like BF28_3710 PF00989 PAS fold BF28_3712 PF00072 Response regulator receiver domain BF28_3712 PF00486 Transcriptional regulatory protein, C terminal BF28_3713 PF00005 ABC transporter BF28_3713 PF00664 ABC transporter transmembrane region BF28_3715 PF01476 LysM domain BF28_3715 PF00877 NlpC/P60 family BF28_3717 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_3717 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_3718 PF17676 LD-carboxypeptidase C-terminal domain BF28_3718 PF02016 LD-carboxypeptidase N-terminal domain BF28_372 PF00430 ATP synthase B/B' CF(0) BF28_3721 PF00664 ABC transporter transmembrane region BF28_3721 PF00005 ABC transporter BF28_3722 PF00664 ABC transporter transmembrane region BF28_3722 PF00005 ABC transporter BF28_3723 PF02322 Cytochrome bd terminal oxidase subunit II BF28_3724 PF01654 Cytochrome bd terminal oxidase subunit I BF28_3726 PF01047 MarR family BF28_373 PF00213 ATP synthase delta (OSCP) subunit BF28_3730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3730 PF03466 LysR substrate binding domain BF28_3732 PF02653 Branched-chain amino acid transport system / permease component BF28_3733 PF00005 ABC transporter BF28_3734 PF00005 ABC transporter BF28_3734 PF12399 Branched-chain amino acid ATP-binding cassette transporter BF28_3736 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_3736 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_3737 PF01575 MaoC like domain BF28_3738 PF00501 AMP-binding enzyme BF28_3738 PF13193 AMP-binding enzyme C-terminal domain BF28_374 PF00306 ATP synthase alpha/beta chain, C terminal domain BF28_374 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_374 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF28_3741 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF28_3741 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF28_3742 PF01593 Flavin containing amine oxidoreductase BF28_3743 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_3743 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_3744 PF01594 AI-2E family transporter BF28_3745 PF01425 Amidase BF28_3747 PF00881 Nitroreductase family BF28_3748 PF01323 DSBA-like thioredoxin domain BF28_3749 PF02082 Transcriptional regulator BF28_375 PF00231 ATP synthase BF28_3750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3750 PF03466 LysR substrate binding domain BF28_3751 PF00892 EamA-like transporter family BF28_3753 PF07987 Domain of unkown function (DUF1775) BF28_3754 PF04234 CopC domain BF28_3754 PF05425 Copper resistance protein D BF28_3754 PF13115 YtkA-like BF28_3756 PF05525 Branched-chain amino acid transport protein BF28_3757 PF02525 Flavodoxin-like fold BF28_376 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_376 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF28_3761 PF18277 AbrB C-terminal domain BF28_3761 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF28_3764 PF00005 ABC transporter BF28_3766 PF01648 4'-phosphopantetheinyl transferase superfamily BF28_3767 PF00664 ABC transporter transmembrane region BF28_3767 PF00005 ABC transporter BF28_3768 PF00501 AMP-binding enzyme BF28_3768 PF13193 AMP-binding enzyme C-terminal domain BF28_3768 PF00668 Condensation domain BF28_3768 PF00550 Phosphopantetheine attachment site BF28_3768 PF00975 Thioesterase domain BF28_3769 PF00501 AMP-binding enzyme BF28_3769 PF13193 AMP-binding enzyme C-terminal domain BF28_3769 PF00668 Condensation domain BF28_3769 PF00550 Phosphopantetheine attachment site BF28_3769 PF00975 Thioesterase domain BF28_377 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BF28_377 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF28_3770 PF00501 AMP-binding enzyme BF28_3770 PF00668 Condensation domain BF28_3770 PF00550 Phosphopantetheine attachment site BF28_3770 PF13193 AMP-binding enzyme C-terminal domain BF28_3770 PF00975 Thioesterase domain BF28_3772 PF00975 Thioesterase domain BF28_3773 PF05195 Aminopeptidase P, N-terminal domain BF28_3773 PF00557 Metallopeptidase family M24 BF28_3777 PF05979 Bacterial protein of unknown function (DUF896) BF28_3778 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_3779 PF00591 Glycosyl transferase family, a/b domain BF28_3779 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_3779 PF02885 Glycosyl transferase family, helical bundle domain BF28_3780 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_3780 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_3781 PF01791 DeoC/LacD family aldolase BF28_3782 PF04198 Putative sugar-binding domain BF28_3784 PF05791 Bacillus haemolytic enterotoxin (HBL) BF28_3785 PF05791 Bacillus haemolytic enterotoxin (HBL) BF28_3787 PF13520 Amino acid permease BF28_3789 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF28_3789 PF02558 Ketopantoate reductase PanE/ApbA BF28_3792 PF01566 Natural resistance-associated macrophage protein BF28_3795 PF00512 His Kinase A (phospho-acceptor) domain BF28_3795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3796 PF00486 Transcriptional regulatory protein, C terminal BF28_3796 PF00072 Response regulator receiver domain BF28_3797 PF13302 Acetyltransferase (GNAT) domain BF28_3798 PF13186 Iron-sulfur cluster-binding domain BF28_3798 PF04055 Radical SAM superfamily BF28_38 PF00344 SecY translocase BF28_380 PF00990 Diguanylate cyclase, GGDEF domain BF28_380 PF03707 Bacterial signalling protein N terminal repeat BF28_380 PF00563 EAL domain BF28_3802 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_3803 PF13026 Protein of unknown function (DUF3887) BF28_3803 PF12146 Serine aminopeptidase, S33 BF28_3804 PF01979 Amidohydrolase family BF28_3807 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BF28_3807 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BF28_3808 PF04397 LytTr DNA-binding domain BF28_3808 PF00072 Response regulator receiver domain BF28_381 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BF28_3810 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BF28_3811 PF07690 Major Facilitator Superfamily BF28_3814 PF09587 Bacterial capsule synthesis protein PGA_cap BF28_3816 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3816 PF00585 C-terminal regulatory domain of Threonine dehydratase BF28_3817 PF00920 Dehydratase family BF28_3818 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF28_3818 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF28_382 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BF28_3820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3820 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3821 PF01063 Amino-transferase class IV BF28_3823 PF01625 Peptide methionine sulfoxide reductase BF28_3826 PF04239 Protein of unknown function (DUF421) BF28_3828 PF01522 Polysaccharide deacetylase BF28_3828 PF00457 Glycosyl hydrolases family 11 BF28_3828 PF03422 Carbohydrate binding module (family 6) BF28_3829 PF00209 Sodium:neurotransmitter symporter family BF28_383 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BF28_3830 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_3830 PF01943 Polysaccharide biosynthesis protein BF28_3833 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3834 PF07690 Major Facilitator Superfamily BF28_3835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_3836 PF16360 GTP-binding GTPase Middle Region BF28_3836 PF13167 GTP-binding GTPase N-terminal BF28_3836 PF01926 50S ribosome-binding GTPase BF28_3838 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_3838 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_3839 PF07690 Major Facilitator Superfamily BF28_384 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BF28_3840 PF07690 Major Facilitator Superfamily BF28_3841 PF10400 Virulence activator alpha C-term BF28_3841 PF03551 Transcriptional regulator PadR-like family BF28_3842 PF03976 Polyphosphate kinase 2 (PPK2) BF28_3843 PF00480 ROK family BF28_3844 PF00294 pfkB family carbohydrate kinase BF28_3845 PF01116 Fructose-bisphosphate aldolase class-II BF28_3846 PF01979 Amidohydrolase family BF28_3847 PF01380 SIS domain BF28_385 PF00146 NADH dehydrogenase BF28_3850 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3851 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3852 PF01547 Bacterial extracellular solute-binding protein BF28_3853 PF13556 PucR C-terminal helix-turn-helix domain BF28_3854 PF00005 ABC transporter BF28_3854 PF17912 MalK OB fold domain BF28_3854 PF03459 TOBE domain BF28_3857 PF07690 Major Facilitator Superfamily BF28_3859 PF00395 S-layer homology domain BF28_3859 PF13205 Bacterial Ig-like domain BF28_3859 PF02368 Bacterial Ig-like domain (group 2) BF28_3860 PF00293 NUDIX domain BF28_3861 PF14158 YndJ-like protein BF28_3862 PF13761 Domain of unknown function (DUF4166) BF28_3864 PF13840 ACT domain BF28_3864 PF00696 Amino acid kinase family BF28_3866 PF01381 Helix-turn-helix BF28_3867 PF03590 Aspartate-ammonia ligase BF28_3869 PF00271 Helicase conserved C-terminal domain BF28_3869 PF00176 SNF2 family N-terminal domain BF28_3869 PF04434 SWIM zinc finger BF28_387 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BF28_3870 PF08664 YcbB domain BF28_3870 PF00072 Response regulator receiver domain BF28_3871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3872 PF00390 Malic enzyme, N-terminal domain BF28_3872 PF03949 Malic enzyme, NAD binding domain BF28_3873 PF00206 Lyase BF28_3873 PF10415 Fumarase C C-terminus BF28_3874 PF00375 Sodium:dicarboxylate symporter family BF28_3875 PF00696 Amino acid kinase family BF28_3876 PF13091 PLD-like domain BF28_3879 PF00005 ABC transporter BF28_388 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BF28_3880 PF13185 GAF domain BF28_3880 PF07730 Histidine kinase BF28_3880 PF13492 GAF domain BF28_3880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3881 PF00196 Bacterial regulatory proteins, luxR family BF28_3881 PF00072 Response regulator receiver domain BF28_3886 PF04286 Protein of unknown function (DUF445) BF28_3887 PF00291 Pyridoxal-phosphate dependent enzyme BF28_389 PF00361 Proton-conducting membrane transporter BF28_389 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF28_389 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BF28_3890 PF00578 AhpC/TSA family BF28_3891 PF02683 Cytochrome C biogenesis protein transmembrane region BF28_3895 PF03575 Peptidase family S51 BF28_3896 PF01554 MatE BF28_3899 PF10415 Fumarase C C-terminus BF28_3899 PF00206 Lyase BF28_39 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BF28_390 PF00361 Proton-conducting membrane transporter BF28_3900 PF03553 Na+/H+ antiporter family BF28_3901 PF00535 Glycosyl transferase family 2 BF28_3902 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF28_3902 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF28_3903 PF00892 EamA-like transporter family BF28_3904 PF07729 FCD domain BF28_3904 PF00392 Bacterial regulatory proteins, gntR family BF28_3906 PF01545 Cation efflux family BF28_3906 PF16916 Dimerisation domain of Zinc Transporter BF28_391 PF00361 Proton-conducting membrane transporter BF28_3910 PF13537 Glutamine amidotransferase domain BF28_3910 PF00733 Asparagine synthase BF28_3912 PF01047 MarR family BF28_3914 PF00561 alpha/beta hydrolase fold BF28_3916 PF00300 Histidine phosphatase superfamily (branch 1) BF28_3918 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_3918 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_392 PF06612 Protein of unknown function (DUF1146) BF28_3921 PF10787 Uncharacterised protein from bacillus cereus group BF28_3923 PF12706 Beta-lactamase superfamily domain BF28_3923 PF00753 Metallo-beta-lactamase superfamily BF28_3924 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3926 PF08402 TOBE domain BF28_3926 PF00005 ABC transporter BF28_3931 PF08141 Small acid-soluble spore protein H family BF28_3932 PF03992 Antibiotic biosynthesis monooxygenase BF28_3935 PF17329 Family of unknown function (DUF5367) BF28_3936 PF00440 Bacterial regulatory proteins, tetR family BF28_3936 PF17932 Tetracyclin repressor-like, C-terminal domain BF28_394 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF28_3941 PF02272 DHHA1 domain BF28_3941 PF01411 tRNA synthetases class II (A) BF28_3941 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_3942 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_3942 PF00460 Flagella basal body rod protein BF28_3943 PF00448 SRP54-type protein, GTPase domain BF28_3944 PF00771 FHIPEP family BF28_3945 PF01312 FlhB HrpN YscU SpaS Family BF28_3947 PF01313 Bacterial export proteins, family 3 BF28_3948 PF00813 FliP family BF28_395 PF08486 Stage II sporulation protein BF28_3950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF28_3950 PF04509 CheC-like family BF28_3951 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF28_3951 PF02154 Flagellar motor switch protein FliM BF28_3953 PF01464 Transglycosylase SLT domain BF28_3954 PF00700 Bacterial flagellin C-terminal helical region BF28_3954 PF00669 Bacterial flagellin N-terminal helical region BF28_3954 PF00669 Bacterial flagellin N-terminal helical region BF28_3954 PF00700 Bacterial flagellin C-terminal helical region BF28_3955 PF00669 Bacterial flagellin N-terminal helical region BF28_3955 PF00700 Bacterial flagellin C-terminal helical region BF28_3956 PF12181 DNA binding domain of the motility gene repressor (MogR) BF28_3957 PF00072 Response regulator receiver domain BF28_3957 PF01584 CheW-like domain BF28_396 PF00072 Response regulator receiver domain BF28_396 PF04397 LytTr DNA-binding domain BF28_3960 PF00460 Flagella basal body rod protein BF28_3960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_3960 PF07559 Flagellar basal body protein FlaE BF28_3964 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_3964 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF28_3964 PF18269 T3SS EscN ATPase C-terminal domain BF28_3966 PF14841 FliG middle domain BF28_3966 PF01706 FliG C-terminal domain BF28_3966 PF14842 FliG N-terminal domain BF28_3967 PF08345 Flagellar M-ring protein C-terminal BF28_3967 PF01514 Secretory protein of YscJ/FliF family BF28_3968 PF02049 Flagellar hook-basal body complex protein FliE BF28_3969 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_3969 PF00460 Flagella basal body rod protein BF28_397 PF00005 ABC transporter BF28_3970 PF00460 Flagella basal body rod protein BF28_3973 PF02465 Flagellar hook-associated protein 2 N-terminus BF28_3973 PF07195 Flagellar hook-associated protein 2 C-terminus BF28_3973 PF07196 Flagellin hook IN motif BF28_3974 PF00669 Bacterial flagellin N-terminal helical region BF28_3974 PF00700 Bacterial flagellin C-terminal helical region BF28_3975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_3975 PF00460 Flagella basal body rod protein BF28_3979 PF01739 CheR methyltransferase, SAM binding domain BF28_3979 PF03705 CheR methyltransferase, all-alpha domain BF28_3982 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF28_3982 PF04509 CheC-like family BF28_3983 PF07194 P2 response regulator binding domain BF28_3983 PF01627 Hpt domain BF28_3983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3983 PF02895 Signal transducing histidine kinase, homodimeric domain BF28_3983 PF01584 CheW-like domain BF28_3984 PF00072 Response regulator receiver domain BF28_3985 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF28_3985 PF00691 OmpA family BF28_3986 PF01618 MotA/TolQ/ExbB proton channel family BF28_3988 PF17209 Hfq protein BF28_399 PF01551 Peptidase family M23 BF28_3999 PF00881 Nitroreductase family BF28_40 PF00327 Ribosomal protein L30p/L7e BF28_4001 PF02698 DUF218 domain BF28_4002 PF04239 Protein of unknown function (DUF421) BF28_4004 PF13411 MerR HTH family regulatory protein BF28_4004 PF06445 GyrI-like small molecule binding domain BF28_4005 PF00753 Metallo-beta-lactamase superfamily BF28_4005 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF28_4005 PF17770 Ribonuclease J C-terminal domain BF28_4006 PF00999 Sodium/hydrogen exchanger family BF28_4008 PF00202 Aminotransferase class-III BF28_4009 PF00474 Sodium:solute symporter family BF28_4010 PF04341 Protein of unknown function, DUF485 BF28_4013 PF01810 LysE type translocator BF28_4014 PF08892 YqcI/YcgG family BF28_4015 PF00313 'Cold-shock' DNA-binding domain BF28_4020 PF01263 Aldose 1-epimerase BF28_4021 PF13456 Reverse transcriptase-like BF28_4025 PF18014 Acetyltransferase (GNAT) domain BF28_4025 PF13673 Acetyltransferase (GNAT) domain BF28_4028 PF01367 5'-3' exonuclease, C-terminal SAM fold BF28_4028 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF28_4029 PF00689 Cation transporting ATPase, C-terminus BF28_4029 PF00690 Cation transporter/ATPase, N-terminus BF28_403 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_4031 PF03738 Glutathionylspermidine synthase preATP-grasp BF28_4034 PF00581 Rhodanese-like domain BF28_4035 PF10752 Protein of unknown function (DUF2533) BF28_4036 PF00583 Acetyltransferase (GNAT) family BF28_4038 PF00350 Dynamin family BF28_4040 PF04235 Protein of unknown function (DUF418) BF28_4041 PF00860 Permease family BF28_4042 PF00156 Phosphoribosyl transferase domain BF28_4043 PF00557 Metallopeptidase family M24 BF28_4044 PF01636 Phosphotransferase enzyme family BF28_4046 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BF28_4047 PF13307 Helicase C-terminal domain BF28_4049 PF02926 THUMP domain BF28_4049 PF01170 Putative RNA methylase family UPF0020 BF28_405 PF01522 Polysaccharide deacetylase BF28_4050 PF05103 DivIVA protein BF28_4051 PF06908 YspA SLOG family BF28_4058 PF10720 Protein of unknown function (DUF2515) BF28_4059 PF03838 Recombination protein U BF28_406 PF12116 Stage III sporulation protein D BF28_4060 PF00905 Penicillin binding protein transpeptidase domain BF28_4060 PF00912 Transglycosylase BF28_4062 PF10576 Iron-sulfur binding domain of endonuclease III BF28_4062 PF00633 Helix-hairpin-helix motif BF28_4062 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_4063 PF07261 Replication initiation and membrane attachment BF28_4064 PF00155 Aminotransferase class I and II BF28_4066 PF14084 Protein of unknown function (DUF4264) BF28_4067 PF13307 Helicase C-terminal domain BF28_4067 PF04851 Type III restriction enzyme, res subunit BF28_4067 PF00929 Exonuclease BF28_4068 PF02261 Aspartate decarboxylase BF28_4069 PF02569 Pantoate-beta-alanine ligase BF28_4070 PF02548 Ketopantoate hydroxymethyltransferase BF28_4072 PF02237 Biotin protein ligase C terminal domain BF28_4072 PF03099 Biotin/lipoate A/B protein ligase family BF28_4072 PF08279 HTH domain BF28_4073 PF01743 Poly A polymerase head domain BF28_4073 PF13735 tRNA nucleotidyltransferase domain 2 putative BF28_4073 PF12627 Probable RNA and SrmB- binding site of polymerase A BF28_4074 PF13439 Glycosyltransferase Family 4 BF28_4074 PF00534 Glycosyl transferases group 1 BF28_4075 PF02585 GlcNAc-PI de-N-acetylase BF28_4076 PF02142 MGS-like domain BF28_4077 PF05173 Dihydrodipicolinate reductase, C-terminus BF28_4077 PF01113 Dihydrodipicolinate reductase, N-terminus BF28_4078 PF03819 MazG nucleotide pyrophosphohydrolase domain BF28_4079 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_4079 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_4081 PF04298 Putative neutral zinc metallopeptidase BF28_4082 PF09577 Sporulation protein YpjB (SpoYpjB) BF28_4084 PF07187 Protein of unknown function (DUF1405) BF28_4085 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF28_4085 PF00032 Cytochrome b(C-terminal)/b6/petD BF28_4086 PF00033 Cytochrome b/b6/petB BF28_4087 PF00355 Rieske [2Fe-2S] domain BF28_4088 PF10673 Protein of unknown function (DUF2487) BF28_4089 PF08864 UPF0302 domain BF28_4089 PF08858 IDEAL domain BF28_4091 PF00155 Aminotransferase class I and II BF28_4092 PF01761 3-dehydroquinate synthase BF28_4093 PF01264 Chorismate synthase BF28_4094 PF00334 Nucleoside diphosphate kinase BF28_4095 PF00348 Polyprenyl synthetase BF28_4096 PF01209 ubiE/COQ5 methyltransferase family BF28_4097 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BF28_4098 PF01227 GTP cyclohydrolase I BF28_4099 PF00216 Bacterial DNA-binding protein BF28_41 PF00333 Ribosomal protein S5, N-terminal domain BF28_41 PF03719 Ribosomal protein S5, C-terminal domain BF28_4100 PF09547 Stage IV sporulation protein A (spore_IV_A) BF28_4102 PF10966 Protein of unknown function (DUF2768) BF28_4104 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF28_4104 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF28_4105 PF01926 50S ribosome-binding GTPase BF28_4105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF28_4107 PF14045 YIEGIA protein BF28_4109 PF14140 YpzI-like protein BF28_4110 PF01070 FMN-dependent dehydrogenase BF28_4111 PF00575 S1 RNA binding domain BF28_4112 PF02224 Cytidylate kinase BF28_4114 PF17763 Glutaminase/Asparaginase C-terminal domain BF28_4114 PF00710 Asparaginase, N-terminal BF28_4119 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_4119 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF28_4120 PF05389 Negative regulator of genetic competence (MecA) BF28_4121 PF02607 B12 binding domain BF28_4121 PF02310 B12 binding domain BF28_4121 PF13411 MerR HTH family regulatory protein BF28_4122 PF00149 Calcineurin-like phosphoesterase BF28_4124 PF02517 CPBP intramembrane metalloprotease BF28_4125 PF00270 DEAD/DEAH box helicase BF28_4125 PF00271 Helicase conserved C-terminal domain BF28_4128 PF12822 ECF transporter, substrate-specific component BF28_4130 PF01551 Peptidase family M23 BF28_4131 PF01923 Cobalamin adenosyltransferase BF28_4132 PF18698 Histidine kinase sensor domain BF28_4132 PF00989 PAS fold BF28_4132 PF00512 His Kinase A (phospho-acceptor) domain BF28_4132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4132 PF00672 HAMP domain BF28_4133 PF00072 Response regulator receiver domain BF28_4133 PF00486 Transcriptional regulatory protein, C terminal BF28_4134 PF01578 Cytochrome C assembly protein BF28_4135 PF05140 ResB-like family BF28_4136 PF00578 AhpC/TSA family BF28_4137 PF00849 RNA pseudouridylate synthase BF28_4137 PF01479 S4 domain BF28_4138 PF07670 Nucleoside recognition BF28_4139 PF07670 Nucleoside recognition BF28_4140 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_4140 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_4141 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF28_4141 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF28_4144 PF03706 Lysylphosphatidylglycerol synthase TM region BF28_4144 PF09924 Uncharacterised conserved protein (DUF2156) BF28_4147 PF01048 Phosphorylase superfamily BF28_4148 PF00989 PAS fold BF28_4148 PF00512 His Kinase A (phospho-acceptor) domain BF28_4148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4148 PF16736 Single Cache-like BF28_4149 PF00589 Phage integrase family BF28_415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF28_415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF28_415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF28_4151 PF01904 Protein of unknown function DUF72 BF28_4152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4152 PF00512 His Kinase A (phospho-acceptor) domain BF28_4152 PF00989 PAS fold BF28_4155 PF00912 Transglycosylase BF28_4155 PF00905 Penicillin binding protein transpeptidase domain BF28_4156 PF01865 Protein of unknown function DUF47 BF28_4157 PF01384 Phosphate transporter family BF28_4158 PF01925 Sulfite exporter TauE/SafE BF28_416 PF01061 ABC-2 type transporter BF28_4161 PF00042 Globin BF28_4161 PF00175 Oxidoreductase NAD-binding domain BF28_4161 PF00970 Oxidoreductase FAD-binding domain BF28_4166 PF08241 Methyltransferase domain BF28_4168 PF05525 Branched-chain amino acid transport protein BF28_417 PF08239 Bacterial SH3 domain BF28_417 PF00005 ABC transporter BF28_4170 PF00196 Bacterial regulatory proteins, luxR family BF28_4170 PF00072 Response regulator receiver domain BF28_4171 PF00672 HAMP domain BF28_4171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4171 PF07730 Histidine kinase BF28_4172 PF09922 Cell wall-active antibiotics response 4TMS YvqF BF28_4175 PF03553 Na+/H+ antiporter family BF28_4177 PF00375 Sodium:dicarboxylate symporter family BF28_4179 PF00209 Sodium:neurotransmitter symporter family BF28_418 PF02350 UDP-N-acetylglucosamine 2-epimerase BF28_4181 PF01903 CbiX BF28_4182 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_4184 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF28_4184 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF28_4186 PF01747 ATP-sulfurylase BF28_4186 PF14306 PUA-like domain BF28_4187 PF01507 Phosphoadenosine phosphosulfate reductase family BF28_4189 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF28_4189 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF28_419 PF07977 FabA-like domain BF28_4191 PF00884 Sulfatase BF28_4192 PF01066 CDP-alcohol phosphatidyltransferase BF28_4193 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF28_4193 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF28_4195 PF02811 PHP domain BF28_4196 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF28_4197 PF01502 Phosphoribosyl-AMP cyclohydrolase BF28_4198 PF00977 Histidine biosynthesis protein BF28_4199 PF00977 Histidine biosynthesis protein BF28_42 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BF28_4200 PF00117 Glutamine amidotransferase class-I BF28_4201 PF00475 Imidazoleglycerol-phosphate dehydratase BF28_4202 PF00815 Histidinol dehydrogenase BF28_4203 PF01634 ATP phosphoribosyltransferase BF28_4204 PF13393 Histidyl-tRNA synthetase BF28_4205 PF00694 Aconitase C-terminal domain BF28_4206 PF00330 Aconitase family (aconitate hydratase) BF28_4207 PF00180 Isocitrate/isopropylmalate dehydrogenase BF28_4208 PF00682 HMGL-like BF28_4208 PF08502 LeuA allosteric (dimerisation) domain BF28_4209 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF28_4209 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF28_421 PF03816 Cell envelope-related transcriptional attenuator domain BF28_4210 PF10369 Small subunit of acetolactate synthase BF28_4210 PF01842 ACT domain BF28_4211 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_4211 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_4211 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_4212 PF01063 Amino-transferase class IV BF28_4214 PF03698 Uncharacterised protein family (UPF0180) BF28_4216 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF28_4218 PF02386 Cation transport protein BF28_4219 PF00375 Sodium:dicarboxylate symporter family BF28_422 PF16363 GDP-mannose 4,6 dehydratase BF28_4221 PF01047 MarR family BF28_4224 PF02673 Bacitracin resistance protein BacA BF28_4225 PF01554 MatE BF28_4229 PF01636 Phosphotransferase enzyme family BF28_423 PF00072 Response regulator receiver domain BF28_423 PF00486 Transcriptional regulatory protein, C terminal BF28_4232 PF00258 Flavodoxin BF28_4234 PF01546 Peptidase family M20/M25/M40 BF28_4234 PF07687 Peptidase dimerisation domain BF28_4236 PF00501 AMP-binding enzyme BF28_4236 PF13193 AMP-binding enzyme C-terminal domain BF28_4237 PF03062 MBOAT, membrane-bound O-acyltransferase family BF28_4238 PF00550 Phosphopantetheine attachment site BF28_4239 PF04914 DltD protein BF28_424 PF00512 His Kinase A (phospho-acceptor) domain BF28_424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_424 PF00989 PAS fold BF28_424 PF16736 Single Cache-like BF28_4240 PF03060 Nitronate monooxygenase BF28_4241 PF17676 LD-carboxypeptidase C-terminal domain BF28_4241 PF02016 LD-carboxypeptidase N-terminal domain BF28_4243 PF00857 Isochorismatase family BF28_4245 PF01037 Lrp/AsnC ligand binding domain BF28_4247 PF02517 CPBP intramembrane metalloprotease BF28_4249 PF00005 ABC transporter BF28_4251 PF00005 ABC transporter BF28_4252 PF00392 Bacterial regulatory proteins, gntR family BF28_4253 PF00268 Ribonucleotide reductase, small chain BF28_4254 PF02867 Ribonucleotide reductase, barrel domain BF28_4254 PF08343 Ribonucleotide reductase N-terminal BF28_4254 PF00317 Ribonucleotide reductase, all-alpha domain BF28_4255 PF08343 Ribonucleotide reductase N-terminal BF28_4255 PF00317 Ribonucleotide reductase, all-alpha domain BF28_4255 PF02867 Ribonucleotide reductase, barrel domain BF28_4256 PF07972 NrdI Flavodoxin like BF28_4262 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BF28_4263 PF14489 QueF-like protein BF28_4264 PF04055 Radical SAM superfamily BF28_4265 PF01242 6-pyruvoyl tetrahydropterin synthase BF28_4266 PF06508 Queuosine biosynthesis protein QueC BF28_4267 PF00989 PAS fold BF28_4267 PF13188 PAS domain BF28_4267 PF00512 His Kinase A (phospho-acceptor) domain BF28_4267 PF13426 PAS domain BF28_4267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4269 PF12867 DinB superfamily BF28_427 PF07690 Major Facilitator Superfamily BF28_4271 PF01047 MarR family BF28_4272 PF00512 His Kinase A (phospho-acceptor) domain BF28_4272 PF02743 Cache domain BF28_4272 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4273 PF09388 Spo0E like sporulation regulatory protein BF28_4274 PF04748 Divergent polysaccharide deacetylase BF28_4276 PF00596 Class II Aldolase and Adducin N-terminal domain BF28_4277 PF00395 S-layer homology domain BF28_4277 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_4279 PF00455 DeoR C terminal sensor domain BF28_4279 PF08220 DeoR-like helix-turn-helix domain BF28_4281 PF00266 Aminotransferase class-V BF28_4282 PF13419 Haloacid dehalogenase-like hydrolase BF28_4283 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4284 PF08402 TOBE domain BF28_4284 PF00005 ABC transporter BF28_4288 PF02386 Cation transport protein BF28_4290 PF00561 alpha/beta hydrolase fold BF28_4295 PF01575 MaoC like domain BF28_4296 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_4297 PF02386 Cation transport protein BF28_4298 PF03741 Integral membrane protein TerC family BF28_4299 PF01226 Formate/nitrite transporter BF28_43 PF00347 Ribosomal protein L6 BF28_4301 PF01478 Type IV leader peptidase family BF28_4301 PF06750 Bacterial Peptidase A24 N-terminal domain BF28_4302 PF02589 LUD domain BF28_4303 PF02589 LUD domain BF28_4303 PF11870 Domain of unknown function (DUF3390) BF28_4303 PF13183 4Fe-4S dicluster domain BF28_4304 PF02754 Cysteine-rich domain BF28_4305 PF00392 Bacterial regulatory proteins, gntR family BF28_4305 PF07729 FCD domain BF28_4306 PF18698 Histidine kinase sensor domain BF28_4306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4306 PF00512 His Kinase A (phospho-acceptor) domain BF28_4306 PF00989 PAS fold BF28_4306 PF00672 HAMP domain BF28_4307 PF00486 Transcriptional regulatory protein, C terminal BF28_4307 PF00072 Response regulator receiver domain BF28_4309 PF13556 PucR C-terminal helix-turn-helix domain BF28_4309 PF05651 Putative sugar diacid recognition BF28_4309 PF17853 GGDEF-like domain BF28_431 PF00005 ABC transporter BF28_4310 PF02913 FAD linked oxidases, C-terminal domain BF28_4310 PF01565 FAD binding domain BF28_4311 PF02754 Cysteine-rich domain BF28_4311 PF13183 4Fe-4S dicluster domain BF28_4312 PF00188 Cysteine-rich secretory protein family BF28_4314 PF00849 RNA pseudouridylate synthase BF28_4314 PF01479 S4 domain BF28_4316 PF03176 MMPL family BF28_4318 PF13416 Bacterial extracellular solute-binding protein BF28_4319 PF00528 Binding-protein-dependent transport system inner membrane component BF28_432 PF12704 MacB-like periplasmic core domain BF28_432 PF02687 FtsX-like permease family BF28_4320 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4321 PF00005 ABC transporter BF28_4321 PF08402 TOBE domain BF28_4322 PF00171 Aldehyde dehydrogenase family BF28_4323 PF05547 Immune inhibitor A peptidase M6 BF28_4324 PF08671 Anti-repressor SinI BF28_4324 PF01381 Helix-turn-helix BF28_4325 PF12389 Camelysin metallo-endopeptidase BF28_4327 PF12389 Camelysin metallo-endopeptidase BF28_4329 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_4329 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_433 PF04893 Yip1 domain BF28_4331 PF13649 Methyltransferase domain BF28_434 PF04893 Yip1 domain BF28_4349 PF01381 Helix-turn-helix BF28_435 PF04545 Sigma-70, region 4 BF28_435 PF04542 Sigma-70 region 2 BF28_4350 PF16870 2-oxoglutarate dehydrogenase C-terminal BF28_4350 PF02779 Transketolase, pyrimidine binding domain BF28_4350 PF00676 Dehydrogenase E1 component BF28_4351 PF02817 e3 binding domain BF28_4351 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_4351 PF00364 Biotin-requiring enzyme BF28_4355 PF01209 ubiE/COQ5 methyltransferase family BF28_4358 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_4358 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_4362 PF10042 Uncharacterized conserved protein (DUF2278) BF28_4363 PF02652 L-lactate permease BF28_4365 PF00290 Tryptophan synthase alpha chain BF28_4366 PF00291 Pyridoxal-phosphate dependent enzyme BF28_4367 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BF28_4368 PF00218 Indole-3-glycerol phosphate synthase BF28_4369 PF00591 Glycosyl transferase family, a/b domain BF28_4369 PF02885 Glycosyl transferase family, helical bundle domain BF28_4370 PF00117 Glutamine amidotransferase class-I BF28_4370 PF02885 Glycosyl transferase family, helical bundle domain BF28_4370 PF00591 Glycosyl transferase family, a/b domain BF28_4372 PF00474 Sodium:solute symporter family BF28_4373 PF02368 Bacterial Ig-like domain (group 2) BF28_4376 PF00756 Putative esterase BF28_4378 PF13673 Acetyltransferase (GNAT) domain BF28_4379 PF00580 UvrD/REP helicase N-terminal domain BF28_4379 PF13361 UvrD-like helicase C-terminal domain BF28_4382 PF07098 Protein of unknown function (DUF1360) BF28_4386 PF04321 RmlD substrate binding domain BF28_4387 PF16363 GDP-mannose 4,6 dehydratase BF28_4388 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF28_4389 PF00483 Nucleotidyl transferase BF28_4393 PF13181 Tetratricopeptide repeat BF28_4393 PF00535 Glycosyl transferase family 2 BF28_4395 PF05711 Macrocin-O-methyltransferase (TylF) BF28_4396 PF08241 Methyltransferase domain BF28_4397 PF00535 Glycosyl transferase family 2 BF28_4398 PF01098 Cell cycle protein BF28_4399 PF00149 Calcineurin-like phosphoesterase BF28_44 PF00410 Ribosomal protein S8 BF28_4401 PF00849 RNA pseudouridylate synthase BF28_4402 PF01513 ATP-NAD kinase BF28_4403 PF04607 Region found in RelA / SpoT proteins BF28_4405 PF01928 CYTH domain BF28_4406 PF01152 Bacterial-like globin BF28_4409 PF08439 Oligopeptidase F BF28_4409 PF01432 Peptidase family M3 BF28_441 PF12419 SNF2 Helicase protein BF28_441 PF00271 Helicase conserved C-terminal domain BF28_441 PF00176 SNF2 family N-terminal domain BF28_4411 PF13396 Phospholipase_D-nuclease N-terminal BF28_4411 PF13091 PLD-like domain BF28_4412 PF05389 Negative regulator of genetic competence (MecA) BF28_4413 PF03741 Integral membrane protein TerC family BF28_4414 PF03960 ArsC family BF28_4416 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4417 PF01554 MatE BF28_4418 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4418 PF00005 ABC transporter BF28_4419 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4419 PF00005 ABC transporter BF28_442 PF04434 SWIM zinc finger BF28_4420 PF12911 N-terminal TM domain of oligopeptide transport permease C BF28_4420 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4421 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4422 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4424 PF00579 tRNA synthetases class I (W and Y) BF28_4425 PF12227 Protein of unknown function (DUF3603) BF28_4426 PF10026 Predicted Zn-dependent protease (DUF2268) BF28_4427 PF00109 Beta-ketoacyl synthase, N-terminal domain BF28_4427 PF02801 Beta-ketoacyl synthase, C-terminal domain BF28_4428 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_4428 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_4429 PF10815 ComZ BF28_4433 PF17871 AAA lid domain BF28_4433 PF02861 Clp amino terminal domain, pathogenicity island component BF28_4433 PF00004 ATPase family associated with various cellular activities (AAA) BF28_4433 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_4433 PF07724 AAA domain (Cdc48 subfamily) BF28_4434 PF14168 YjzC-like protein BF28_4437 PF12758 Protein of unknown function (DUF3813) BF28_4438 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_4438 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_4440 PF00639 PPIC-type PPIASE domain BF28_4441 PF17783 CvfB-like winged helix domain BF28_4441 PF13509 S1 domain BF28_4442 PF04461 Protein of unknown function (DUF520) BF28_4444 PF00128 Alpha amylase, catalytic domain BF28_4445 PF00909 Ammonium Transporter Family BF28_4446 PF06628 Catalase-related immune-responsive BF28_4446 PF00199 Catalase BF28_4448 PF00733 Asparagine synthase BF28_4448 PF13537 Glutamine amidotransferase domain BF28_4450 PF07457 Protein of unknown function (DUF1516) BF28_4451 PF00202 Aminotransferase class-III BF28_4453 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF28_4454 PF09388 Spo0E like sporulation regulatory protein BF28_4455 PF10676 Spore germination protein gerPA/gerPF BF28_4456 PF10803 Spore germination GerPB BF28_4457 PF10737 Spore germination protein GerPC BF28_4459 PF10970 Spore germination protein GerPE BF28_4460 PF10676 Spore germination protein gerPA/gerPF BF28_4462 PF13361 UvrD-like helicase C-terminal domain BF28_4462 PF00580 UvrD/REP helicase N-terminal domain BF28_4462 PF12705 PD-(D/E)XK nuclease superfamily BF28_4463 PF12705 PD-(D/E)XK nuclease superfamily BF28_4463 PF13361 UvrD-like helicase C-terminal domain BF28_4464 PF10502 Signal peptidase, peptidase S26 BF28_4465 PF09335 SNARE associated Golgi protein BF28_4466 PF06338 ComK protein BF28_4469 PF00313 'Cold-shock' DNA-binding domain BF28_447 PF06725 3D domain BF28_447 PF01476 LysM domain BF28_4471 PF00463 Isocitrate lyase family BF28_4472 PF01274 Malate synthase BF28_4473 PF00395 S-layer homology domain BF28_4475 PF03424 Carbohydrate binding domain (family 17/28) BF28_4475 PF00150 Cellulase (glycosyl hydrolase family 5) BF28_4475 PF00395 S-layer homology domain BF28_4476 PF00892 EamA-like transporter family BF28_4477 PF02743 Cache domain BF28_4477 PF00672 HAMP domain BF28_4477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_4478 PF16491 CAAX prenyl protease N-terminal, five membrane helices BF28_4478 PF01435 Peptidase family M48 BF28_448 PF02028 BCCT, betaine/carnitine/choline family transporter BF28_4483 PF00486 Transcriptional regulatory protein, C terminal BF28_4483 PF00072 Response regulator receiver domain BF28_4484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4484 PF00512 His Kinase A (phospho-acceptor) domain BF28_4486 PF06445 GyrI-like small molecule binding domain BF28_4486 PF12833 Helix-turn-helix domain BF28_4487 PF04542 Sigma-70 region 2 BF28_4487 PF08281 Sigma-70, region 4 BF28_4489 PF01966 HD domain BF28_4490 PF00149 Calcineurin-like phosphoesterase BF28_4491 PF07968 Leukocidin/Hemolysin toxin family BF28_4492 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_4492 PF00395 S-layer homology domain BF28_4494 PF00501 AMP-binding enzyme BF28_4494 PF13193 AMP-binding enzyme C-terminal domain BF28_4496 PF10437 Bacterial lipoate protein ligase C-terminus BF28_4496 PF03099 Biotin/lipoate A/B protein ligase family BF28_4497 PF12706 Beta-lactamase superfamily domain BF28_4498 PF14149 YhfH-like protein BF28_4499 PF00356 Bacterial regulatory proteins, lacI family BF28_45 PF00253 Ribosomal protein S14p/S29e BF28_4500 PF08279 HTH domain BF28_4500 PF13280 WYL domain BF28_4502 PF13302 Acetyltransferase (GNAT) domain BF28_4506 PF00440 Bacterial regulatory proteins, tetR family BF28_4506 PF17932 Tetracyclin repressor-like, C-terminal domain BF28_4508 PF03965 Penicillinase repressor BF28_4515 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF28_4516 PF00912 Transglycosylase BF28_4516 PF00905 Penicillin binding protein transpeptidase domain BF28_4517 PF03992 Antibiotic biosynthesis monooxygenase BF28_4518 PF03703 Bacterial PH domain BF28_4519 PF03703 Bacterial PH domain BF28_452 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_452 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_4525 PF00395 S-layer homology domain BF28_4525 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_4527 PF03703 Bacterial PH domain BF28_4528 PF03703 Bacterial PH domain BF28_453 PF00877 NlpC/P60 family BF28_453 PF01476 LysM domain BF28_4530 PF00440 Bacterial regulatory proteins, tetR family BF28_4530 PF17934 Tetracyclin repressor-like, C-terminal domain BF28_454 PF01063 Amino-transferase class IV BF28_4544 PF12787 EcsC protein family BF28_4545 PF05975 Bacterial ABC transporter protein EcsB BF28_4546 PF00005 ABC transporter BF28_4547 PF01230 HIT domain BF28_4548 PF12732 YtxH-like protein BF28_4549 PF01047 MarR family BF28_455 PF00884 Sulfatase BF28_4553 PF13538 UvrD-like helicase C-terminal domain BF28_4555 PF07690 Major Facilitator Superfamily BF28_4556 PF07690 Major Facilitator Superfamily BF28_4561 PF04542 Sigma-70 region 2 BF28_4561 PF08281 Sigma-70, region 4 BF28_4564 PF01266 FAD dependent oxidoreductase BF28_4564 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BF28_4565 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_4565 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_4566 PF00230 Major intrinsic protein BF28_4567 PF04309 Glycerol-3-phosphate responsive antiterminator BF28_457 PF09988 Uncharacterized metal-binding protein (DUF2227) BF28_4572 PF08386 TAP-like protein BF28_4572 PF00561 alpha/beta hydrolase fold BF28_4574 PF18801 response regulator aspartate phosphatase H, N terminal BF28_4574 PF17874 MalT-like TPR region BF28_4575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_4576 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_4582 PF01966 HD domain BF28_4582 PF01336 OB-fold nucleic acid binding domain BF28_4583 PF13514 AAA domain BF28_4584 PF00149 Calcineurin-like phosphoesterase BF28_4587 PF11121 Protein of unknown function (DUF2639) BF28_459 PF02652 L-lactate permease BF28_4593 PF00005 ABC transporter BF28_4594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4594 PF00512 His Kinase A (phospho-acceptor) domain BF28_4595 PF00072 Response regulator receiver domain BF28_4595 PF00486 Transcriptional regulatory protein, C terminal BF28_4597 PF01906 Putative heavy-metal-binding BF28_46 PF00281 Ribosomal protein L5 BF28_46 PF00673 ribosomal L5P family C-terminus BF28_4602 PF00512 His Kinase A (phospho-acceptor) domain BF28_4602 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BF28_4602 PF00072 Response regulator receiver domain BF28_4602 PF01627 Hpt domain BF28_4602 PF00672 HAMP domain BF28_4602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4603 PF03705 CheR methyltransferase, all-alpha domain BF28_4603 PF01739 CheR methyltransferase, SAM binding domain BF28_4604 PF07228 Stage II sporulation protein E (SpoIIE) BF28_4604 PF13426 PAS domain BF28_4606 PF04545 Sigma-70, region 4 BF28_4606 PF04539 Sigma-70 region 3 BF28_4606 PF04542 Sigma-70 region 2 BF28_4607 PF13581 Histidine kinase-like ATPase domain BF28_4608 PF01740 STAS domain BF28_4611 PF05532 CsbD-like BF28_4612 PF11181 Heat induced stress protein YflT BF28_4617 PF00395 S-layer homology domain BF28_4622 PF00672 HAMP domain BF28_4622 PF01966 HD domain BF28_4628 PF02734 DAK2 domain BF28_4629 PF02082 Transcriptional regulator BF28_463 PF02652 L-lactate permease BF28_4630 PF02525 Flavodoxin-like fold BF28_4631 PF02733 Dak1 domain BF28_4633 PF02733 Dak1 domain BF28_4639 PF01066 CDP-alcohol phosphatidyltransferase BF28_464 PF01964 Radical SAM ThiC family BF28_464 PF13667 ThiC-associated domain BF28_4641 PF00232 Glycosyl hydrolase family 1 BF28_4642 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF28_4642 PF02378 Phosphotransferase system, EIIC BF28_4642 PF00367 phosphotransferase system, EIIB BF28_4643 PF03123 CAT RNA binding domain BF28_4643 PF00874 PRD domain BF28_4645 PF00440 Bacterial regulatory proteins, tetR family BF28_4645 PF18665 Tetracyclin repressor-like, C-terminal domain BF28_4646 PF00550 Phosphopantetheine attachment site BF28_4646 PF07993 Male sterility protein BF28_465 PF02040 Arsenical pump membrane protein BF28_466 PF02322 Cytochrome bd terminal oxidase subunit II BF28_4660 PF01925 Sulfite exporter TauE/SafE BF28_4662 PF00772 DnaB-like helicase N terminal domain BF28_4662 PF03796 DnaB-like helicase C terminal domain BF28_4665 PF06445 GyrI-like small molecule binding domain BF28_4665 PF13411 MerR HTH family regulatory protein BF28_467 PF01654 Cytochrome bd terminal oxidase subunit I BF28_4672 PF00266 Aminotransferase class-V BF28_4674 PF13476 AAA domain BF28_4676 PF05872 Bacterial protein of unknown function (DUF853) BF28_4686 PF04851 Type III restriction enzyme, res subunit BF28_4686 PF12344 Ultra-violet resistance protein B BF28_4686 PF17757 UvrB interaction domain BF28_4686 PF02151 UvrB/uvrC motif BF28_4686 PF00271 Helicase conserved C-terminal domain BF28_4690 PF01926 50S ribosome-binding GTPase BF28_4690 PF07650 KH domain BF28_4692 PF00005 ABC transporter BF28_4692 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4693 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4693 PF00005 ABC transporter BF28_4694 PF12911 N-terminal TM domain of oligopeptide transport permease C BF28_4694 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4695 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4696 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_47 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BF28_47 PF00467 KOW motif BF28_470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_470 PF03466 LysR substrate binding domain BF28_4700 PF02423 Ornithine cyclodeaminase/mu-crystallin family BF28_4701 PF05544 Proline racemase BF28_4702 PF11121 Protein of unknown function (DUF2639) BF28_4704 PF00395 S-layer homology domain BF28_4704 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_4705 PF05343 M42 glutamyl aminopeptidase BF28_4709 PF00378 Enoyl-CoA hydratase/isomerase BF28_4713 PF03062 MBOAT, membrane-bound O-acyltransferase family BF28_4714 PF03062 MBOAT, membrane-bound O-acyltransferase family BF28_4716 PF00395 S-layer homology domain BF28_4717 PF02368 Bacterial Ig-like domain (group 2) BF28_4717 PF00395 S-layer homology domain BF28_4717 PF13205 Bacterial Ig-like domain BF28_4719 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_4719 PF01943 Polysaccharide biosynthesis protein BF28_472 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_4720 PF07516 SecA Wing and Scaffold domain BF28_4720 PF01043 SecA preprotein cross-linking domain BF28_4720 PF07517 SecA DEAD-like domain BF28_4724 PF01740 STAS domain BF28_4724 PF00916 Sulfate permease family BF28_4726 PF00501 AMP-binding enzyme BF28_4726 PF13193 AMP-binding enzyme C-terminal domain BF28_4727 PF04055 Radical SAM superfamily BF28_4728 PF01471 Putative peptidoglycan binding domain BF28_4728 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_4731 PF02245 Methylpurine-DNA glycosylase (MPG) BF28_4732 PF03306 Alpha-acetolactate decarboxylase BF28_4733 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_4733 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_4733 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_474 PF00375 Sodium:dicarboxylate symporter family BF28_4741 PF00196 Bacterial regulatory proteins, luxR family BF28_4741 PF00072 Response regulator receiver domain BF28_4742 PF07730 Histidine kinase BF28_4742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4744 PF06133 Control of competence regulator ComK, YlbF/YmcA BF28_4745 PF04286 Protein of unknown function (DUF445) BF28_4747 PF14398 YheC/D like ATP-grasp BF28_4749 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_4750 PF00005 ABC transporter BF28_4751 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4752 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_4753 PF00664 ABC transporter transmembrane region BF28_4753 PF00005 ABC transporter BF28_4754 PF00664 ABC transporter transmembrane region BF28_4754 PF00005 ABC transporter BF28_4755 PF00171 Aldehyde dehydrogenase family BF28_4756 PF13520 Amino acid permease BF28_4758 PF00199 Catalase BF28_4758 PF06628 Catalase-related immune-responsive BF28_4758 PF18011 C-terminal domain found in long catalases BF28_4759 PF01965 DJ-1/PfpI family BF28_476 PF02378 Phosphotransferase system, EIIC BF28_4761 PF07690 Major Facilitator Superfamily BF28_4762 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4762 PF12793 Sugar transport-related sRNA regulator N-term BF28_4763 PF02525 Flavodoxin-like fold BF28_4765 PF01638 HxlR-like helix-turn-helix BF28_4766 PF00107 Zinc-binding dehydrogenase BF28_4766 PF08240 Alcohol dehydrogenase GroES-like domain BF28_4768 PF00067 Cytochrome P450 BF28_4769 PF00440 Bacterial regulatory proteins, tetR family BF28_4769 PF17922 Tetracyclin repressor-like, C-terminal domain BF28_477 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF28_4770 PF07859 alpha/beta hydrolase fold BF28_4771 PF07690 Major Facilitator Superfamily BF28_4772 PF01494 FAD binding domain BF28_4773 PF01047 MarR family BF28_4774 PF01638 HxlR-like helix-turn-helix BF28_4775 PF07690 Major Facilitator Superfamily BF28_4776 PF17934 Tetracyclin repressor-like, C-terminal domain BF28_4776 PF00440 Bacterial regulatory proteins, tetR family BF28_4777 PF00893 Small Multidrug Resistance protein BF28_4778 PF00893 Small Multidrug Resistance protein BF28_478 PF02675 S-adenosylmethionine decarboxylase BF28_4780 PF01037 Lrp/AsnC ligand binding domain BF28_4781 PF00892 EamA-like transporter family BF28_4784 PF07681 DoxX BF28_4787 PF00367 phosphotransferase system, EIIB BF28_4787 PF02378 Phosphotransferase system, EIIC BF28_4788 PF00367 phosphotransferase system, EIIB BF28_4788 PF02378 Phosphotransferase system, EIIC BF28_4789 PF01380 SIS domain BF28_4790 PF01380 SIS domain BF28_4790 PF01418 Helix-turn-helix domain, rpiR family BF28_4792 PF00999 Sodium/hydrogen exchanger family BF28_4793 PF13520 Amino acid permease BF28_48 PF00238 Ribosomal protein L14p/L23e BF28_480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_4800 PF09335 SNARE associated Golgi protein BF28_4802 PF02735 Ku70/Ku80 beta-barrel domain BF28_4805 PF11007 Spore coat associated protein JA (CotJA) BF28_4806 PF12652 CotJB protein BF28_4807 PF05067 Manganese containing catalase BF28_4808 PF05525 Branched-chain amino acid transport protein BF28_4809 PF02687 FtsX-like permease family BF28_481 PF02378 Phosphotransferase system, EIIC BF28_4812 PF09529 Integral membrane protein (intg_mem_TP0381) BF28_4814 PF00005 ABC transporter BF28_4815 PF12704 MacB-like periplasmic core domain BF28_4815 PF02687 FtsX-like permease family BF28_4816 PF06725 3D domain BF28_4816 PF01476 LysM domain BF28_4819 PF02378 Phosphotransferase system, EIIC BF28_482 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF28_4820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_4821 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF28_4822 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF28_4822 PF05043 Mga helix-turn-helix domain BF28_4822 PF00874 PRD domain BF28_4822 PF08279 HTH domain BF28_4824 PF07690 Major Facilitator Superfamily BF28_4825 PF02690 Na+/Pi-cotransporter BF28_4826 PF08240 Alcohol dehydrogenase GroES-like domain BF28_4826 PF00107 Zinc-binding dehydrogenase BF28_4827 PF03816 Cell envelope-related transcriptional attenuator domain BF28_4829 PF01925 Sulfite exporter TauE/SafE BF28_483 PF11975 Family 4 glycosyl hydrolase C-terminal domain BF28_483 PF02056 Family 4 glycosyl hydrolase BF28_4830 PF13686 DsrE/DsrF/DrsH-like family BF28_4832 PF00581 Rhodanese-like domain BF28_4833 PF01206 Sulfurtransferase TusA BF28_4834 PF00753 Metallo-beta-lactamase superfamily BF28_4834 PF00581 Rhodanese-like domain BF28_4835 PF00581 Rhodanese-like domain BF28_4835 PF01206 Sulfurtransferase TusA BF28_4836 PF02583 Metal-sensitive transcriptional repressor BF28_4837 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_4837 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_4839 PF04293 SpoVR like protein BF28_484 PF04794 YdjC-like protein BF28_4840 PF00881 Nitroreductase family BF28_4842 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_4844 PF03845 Spore germination protein BF28_4846 PF14148 YhdB-like protein BF28_4847 PF02600 Disulfide bond formation protein DsbB BF28_4848 PF00085 Thioredoxin BF28_485 PF02417 Chromate transporter BF28_4851 PF03734 L,D-transpeptidase catalytic domain BF28_4851 PF17969 L,D-transpeptidase C-terminal domain BF28_4853 PF00860 Permease family BF28_4856 PF01047 MarR family BF28_4857 PF07690 Major Facilitator Superfamily BF28_4858 PF02702 Osmosensitive K+ channel His kinase sensor domain BF28_4859 PF02669 K+-transporting ATPase, c chain BF28_4861 PF03814 Potassium-transporting ATPase A subunit BF28_4865 PF08543 Phosphomethylpyrimidine kinase BF28_4866 PF00899 ThiF family BF28_4867 PF05690 Thiazole biosynthesis protein ThiG BF28_4868 PF02597 ThiS family BF28_4869 PF01266 FAD dependent oxidoreductase BF28_487 PF03610 PTS system fructose IIA component BF28_487 PF00874 PRD domain BF28_487 PF00158 Sigma-54 interaction domain BF28_4870 PF02581 Thiamine monophosphate synthase BF28_4871 PF09084 NMT1/THI5 like BF28_4872 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4873 PF00005 ABC transporter BF28_4874 PF03070 TENA/THI-4/PQQC family BF28_4875 PF08239 Bacterial SH3 domain BF28_4875 PF00246 Zinc carboxypeptidase BF28_4878 PF00571 CBS domain BF28_489 PF00953 Glycosyl transferase family 4 BF28_49 PF00366 Ribosomal protein S17 BF28_490 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF28_490 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF28_490 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF28_4903 PF00873 AcrB/AcrD/AcrF family BF28_4905 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4906 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4907 PF12849 PBP superfamily domain BF28_4908 PF07670 Nucleoside recognition BF28_4908 PF02421 Ferrous iron transport protein B BF28_4908 PF07664 Ferrous iron transport protein B C terminus BF28_4908 PF17910 FeoB cytosolic helical domain BF28_4908 PF04023 FeoA domain BF28_4909 PF07664 Ferrous iron transport protein B C terminus BF28_4909 PF02421 Ferrous iron transport protein B BF28_4909 PF17910 FeoB cytosolic helical domain BF28_4909 PF07670 Nucleoside recognition BF28_491 PF02350 UDP-N-acetylglucosamine 2-epimerase BF28_4910 PF07664 Ferrous iron transport protein B C terminus BF28_4910 PF17910 FeoB cytosolic helical domain BF28_4910 PF02421 Ferrous iron transport protein B BF28_4910 PF07670 Nucleoside recognition BF28_4911 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_4912 PF03845 Spore germination protein BF28_4913 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_4914 PF00474 Sodium:solute symporter family BF28_4915 PF11755 Protein of unknown function (DUF3311) BF28_4916 PF01546 Peptidase family M20/M25/M40 BF28_4916 PF07687 Peptidase dimerisation domain BF28_4917 PF13529 Peptidase_C39 like family BF28_4918 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF28_4919 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF28_492 PF03816 Cell envelope-related transcriptional attenuator domain BF28_4920 PF00510 Cytochrome c oxidase subunit III BF28_4922 PF00999 Sodium/hydrogen exchanger family BF28_4922 PF02080 TrkA-C domain BF28_4922 PF02254 TrkA-N domain BF28_4924 PF13673 Acetyltransferase (GNAT) domain BF28_4927 PF00860 Permease family BF28_4928 PF00324 Amino acid permease BF28_493 PF09186 Domain of unknown function (DUF1949) BF28_493 PF01205 Uncharacterized protein family UPF0029 BF28_4931 PF05525 Branched-chain amino acid transport protein BF28_4932 PF00854 POT family BF28_4933 PF04203 Sortase domain BF28_4935 PF01381 Helix-turn-helix BF28_4936 PF06725 3D domain BF28_4936 PF01476 LysM domain BF28_4937 PF02743 Cache domain BF28_4937 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_4937 PF00672 HAMP domain BF28_4938 PF02673 Bacitracin resistance protein BacA BF28_494 PF02645 Uncharacterised protein, DegV family COG1307 BF28_4943 PF03372 Endonuclease/Exonuclease/phosphatase family BF28_4944 PF00882 Zinc dependent phospholipase C BF28_4948 PF00107 Zinc-binding dehydrogenase BF28_4948 PF08240 Alcohol dehydrogenase GroES-like domain BF28_495 PF01638 HxlR-like helix-turn-helix BF28_4951 PF05547 Immune inhibitor A peptidase M6 BF28_4952 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF28_4953 PF13407 Periplasmic binding protein domain BF28_4954 PF02653 Branched-chain amino acid transport system / permease component BF28_4955 PF00005 ABC transporter BF28_4956 PF05025 RbsD / FucU transport protein family BF28_4957 PF00294 pfkB family carbohydrate kinase BF28_4958 PF00356 Bacterial regulatory proteins, lacI family BF28_4959 PF07690 Major Facilitator Superfamily BF28_496 PF01476 LysM domain BF28_496 PF00877 NlpC/P60 family BF28_4960 PF01047 MarR family BF28_4961 PF07690 Major Facilitator Superfamily BF28_4962 PF00005 ABC transporter BF28_4962 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4963 PF00005 ABC transporter BF28_4963 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4964 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4965 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4966 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4968 PF00582 Universal stress protein family BF28_4969 PF00916 Sulfate permease family BF28_4969 PF01740 STAS domain BF28_497 PF00271 Helicase conserved C-terminal domain BF28_497 PF04851 Type III restriction enzyme, res subunit BF28_4971 PF00072 Response regulator receiver domain BF28_4971 PF00486 Transcriptional regulatory protein, C terminal BF28_4972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4972 PF00512 His Kinase A (phospho-acceptor) domain BF28_4972 PF00989 PAS fold BF28_4972 PF18698 Histidine kinase sensor domain BF28_4972 PF00672 HAMP domain BF28_4973 PF01872 RibD C-terminal domain BF28_4974 PF08279 HTH domain BF28_4974 PF13280 WYL domain BF28_4979 PF00324 Amino acid permease BF28_4980 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4981 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4982 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_4983 PF00005 ABC transporter BF28_4984 PF01235 Sodium:alanine symporter family BF28_4985 PF01636 Phosphotransferase enzyme family BF28_4987 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_499 PF00313 'Cold-shock' DNA-binding domain BF28_4990 PF00128 Alpha amylase, catalytic domain BF28_4990 PF16657 Maltogenic Amylase, C-terminal domain BF28_4991 PF02378 Phosphotransferase system, EIIC BF28_4991 PF00367 phosphotransferase system, EIIB BF28_4992 PF07702 UTRA domain BF28_4992 PF00392 Bacterial regulatory proteins, gntR family BF28_4993 PF13520 Amino acid permease BF28_4994 PF03707 Bacterial signalling protein N terminal repeat BF28_4994 PF00990 Diguanylate cyclase, GGDEF domain BF28_4994 PF00563 EAL domain BF28_4997 PF13091 PLD-like domain BF28_4997 PF13396 Phospholipase_D-nuclease N-terminal BF28_4998 PF07728 AAA domain (dynein-related subfamily) BF28_4999 PF00092 von Willebrand factor type A domain BF28_50 PF00831 Ribosomal L29 protein BF28_500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF28_500 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BF28_5000 PF00293 NUDIX domain BF28_5000 PF13344 Haloacid dehalogenase-like hydrolase BF28_5001 PF00156 Phosphoribosyl transferase domain BF28_5002 PF01370 NAD dependent epimerase/dehydratase family BF28_5003 PF00155 Aminotransferase class I and II BF28_5004 PF08241 Methyltransferase domain BF28_5005 PF00005 ABC transporter BF28_5006 PF01032 FecCD transport family BF28_5007 PF01032 FecCD transport family BF28_5008 PF01497 Periplasmic binding protein BF28_5009 PF00854 POT family BF28_501 PF02810 SEC-C motif BF28_501 PF07517 SecA DEAD-like domain BF28_501 PF01043 SecA preprotein cross-linking domain BF28_501 PF07516 SecA Wing and Scaffold domain BF28_5010 PF08141 Small acid-soluble spore protein H family BF28_5011 PF01022 Bacterial regulatory protein, arsR family BF28_5012 PF02652 L-lactate permease BF28_5013 PF00206 Lyase BF28_5013 PF10415 Fumarase C C-terminus BF28_5014 PF03471 Transporter associated domain BF28_5014 PF00571 CBS domain BF28_5014 PF01595 Cyclin M transmembrane N-terminal domain BF28_5015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5016 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_5016 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_5017 PF03816 Cell envelope-related transcriptional attenuator domain BF28_5018 PF04294 VanW like protein BF28_502 PF03462 PCRF domain BF28_502 PF00472 RF-1 domain BF28_5022 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5022 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5022 PF03413 Peptidase propeptide and YPEB domain BF28_5022 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_5025 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BF28_5025 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF28_5025 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BF28_5026 PF00403 Heavy-metal-associated domain BF28_5027 PF01022 Bacterial regulatory protein, arsR family BF28_5028 PF13520 Amino acid permease BF28_5029 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF28_5029 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF28_503 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF28_5031 PF07849 Protein of unknown function (DUF1641) BF28_5032 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF28_5032 PF00384 Molybdopterin oxidoreductase BF28_5032 PF00037 4Fe-4S binding domain BF28_5032 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_5032 PF01568 Molydopterin dinucleotide binding domain BF28_5033 PF02634 FdhD/NarQ family BF28_5034 PF13508 Acetyltransferase (GNAT) domain BF28_5034 PF00583 Acetyltransferase (GNAT) family BF28_5036 PF00486 Transcriptional regulatory protein, C terminal BF28_5036 PF00072 Response regulator receiver domain BF28_5037 PF00672 HAMP domain BF28_5037 PF00512 His Kinase A (phospho-acceptor) domain BF28_5037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5037 PF18698 Histidine kinase sensor domain BF28_5037 PF00989 PAS fold BF28_5039 PF00155 Aminotransferase class I and II BF28_5039 PF00392 Bacterial regulatory proteins, gntR family BF28_504 PF00005 ABC transporter BF28_5040 PF00892 EamA-like transporter family BF28_5042 PF00390 Malic enzyme, N-terminal domain BF28_5042 PF03949 Malic enzyme, NAD binding domain BF28_5043 PF03390 2-hydroxycarboxylate transporter family BF28_5044 PF00072 Response regulator receiver domain BF28_5045 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF28_5045 PF17203 Single cache domain 3 BF28_5045 PF00989 PAS fold BF28_5045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5046 PF00672 HAMP domain BF28_5046 PF02743 Cache domain BF28_5047 PF13529 Peptidase_C39 like family BF28_5049 PF00512 His Kinase A (phospho-acceptor) domain BF28_5049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_505 PF02687 FtsX-like permease family BF28_505 PF18075 FtsX extracellular domain BF28_5050 PF00072 Response regulator receiver domain BF28_5050 PF00486 Transcriptional regulatory protein, C terminal BF28_5051 PF00149 Calcineurin-like phosphoesterase BF28_5052 PF13416 Bacterial extracellular solute-binding protein BF28_5053 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5054 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5055 PF00005 ABC transporter BF28_5055 PF17912 MalK OB fold domain BF28_5056 PF04309 Glycerol-3-phosphate responsive antiterminator BF28_506 PF17820 PDZ domain BF28_506 PF03572 Peptidase family S41 BF28_506 PF01471 Putative peptidoglycan binding domain BF28_5061 PF03600 Citrate transporter BF28_5063 PF00072 Response regulator receiver domain BF28_5063 PF12431 Transcriptional regulator BF28_5064 PF17203 Single cache domain 3 BF28_5064 PF00989 PAS fold BF28_5064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5064 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF28_5065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5065 PF02743 Cache domain BF28_5065 PF00672 HAMP domain BF28_5066 PF15975 Flotillin BF28_5066 PF01145 SPFH domain / Band 7 family BF28_5068 PF08453 Peptidase family M9 N-terminal BF28_5068 PF01752 Collagenase BF28_5068 PF18496 Collagenase G catalytic helper subdomain BF28_5069 PF02028 BCCT, betaine/carnitine/choline family transporter BF28_507 PF17820 PDZ domain BF28_5070 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5071 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5072 PF00005 ABC transporter BF28_5073 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_5077 PF04285 Protein of unknown function (DUF444) BF28_5078 PF06798 PrkA serine protein kinase C-terminal domain BF28_5078 PF08298 PrkA AAA domain BF28_508 PF00664 ABC transporter transmembrane region BF28_508 PF00005 ABC transporter BF28_5080 PF00990 Diguanylate cyclase, GGDEF domain BF28_5080 PF00563 EAL domain BF28_5080 PF03707 Bacterial signalling protein N terminal repeat BF28_5081 PF00588 SpoU rRNA Methylase family BF28_5082 PF12671 Putative amidase domain BF28_5083 PF08331 Domain of unknown function (DUF1730) BF28_5085 PF13462 Thioredoxin BF28_5086 PF00905 Penicillin binding protein transpeptidase domain BF28_5086 PF00912 Transglycosylase BF28_5087 PF13344 Haloacid dehalogenase-like hydrolase BF28_5087 PF00293 NUDIX domain BF28_5088 PF01709 Transcriptional regulator BF28_509 PF01906 Putative heavy-metal-binding BF28_51 PF00252 Ribosomal protein L16p/L10e BF28_5109 PF11023 Zinc-ribbon containing domain BF28_511 PF03358 NADPH-dependent FMN reductase BF28_5110 PF01475 Ferric uptake regulator family BF28_5111 PF00578 AhpC/TSA family BF28_5112 PF07885 Ion channel BF28_5115 PF00005 ABC transporter BF28_5116 PF00202 Aminotransferase class-III BF28_5117 PF04898 Glutamate synthase central domain BF28_5117 PF01645 Conserved region in glutamate synthase BF28_5117 PF00310 Glutamine amidotransferases class-II BF28_5117 PF01493 GXGXG motif BF28_5118 PF06081 Aromatic acid exporter family member 1 BF28_5119 PF00664 ABC transporter transmembrane region BF28_5119 PF00005 ABC transporter BF28_512 PF00376 MerR family regulatory protein BF28_512 PF09278 MerR, DNA binding BF28_5120 PF04167 Protein of unknown function (DUF402) BF28_5121 PF14182 YgaB-like protein BF28_5122 PF04259 Small, acid-soluble spore protein, gamma-type BF28_5124 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_5124 PF14815 NUDIX domain BF28_5125 PF04307 LexA-binding, inner membrane-associated putative hydrolase BF28_5126 PF14043 WVELL protein BF28_5127 PF08176 Small acid-soluble spore protein K family BF28_513 PF03466 LysR substrate binding domain BF28_513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_5130 PF02631 RecX family BF28_5131 PF08338 Domain of unknown function (DUF1731) BF28_5131 PF01370 NAD dependent epimerase/dehydratase family BF28_5132 PF01979 Amidohydrolase family BF28_5135 PF04101 Glycosyltransferase family 28 C-terminal domain BF28_5135 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF28_5136 PF04055 Radical SAM superfamily BF28_5137 PF02901 Pyruvate formate lyase-like BF28_5137 PF01228 Glycine radical BF28_5138 PF00535 Glycosyl transferase family 2 BF28_5139 PF01370 NAD dependent epimerase/dehydratase family BF28_5139 PF00551 Formyl transferase BF28_5139 PF02911 Formyl transferase, C-terminal domain BF28_514 PF03601 Conserved hypothetical protein 698 BF28_5140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF28_5140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF28_5140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF28_5141 PF00535 Glycosyl transferase family 2 BF28_5145 PF00144 Beta-lactamase BF28_5146 PF00367 phosphotransferase system, EIIB BF28_5146 PF02378 Phosphotransferase system, EIIC BF28_5147 PF04960 Glutaminase BF28_5152 PF07687 Peptidase dimerisation domain BF28_5152 PF01546 Peptidase family M20/M25/M40 BF28_5153 PF00324 Amino acid permease BF28_5155 PF02954 Bacterial regulatory protein, Fis family BF28_5155 PF13426 PAS domain BF28_5155 PF00158 Sigma-54 interaction domain BF28_5157 PF01416 tRNA pseudouridine synthase BF28_5158 PF01938 TRAM domain BF28_5158 PF05958 tRNA (Uracil-5-)-methyltransferase BF28_5159 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_5160 PF01522 Polysaccharide deacetylase BF28_5161 PF05681 Fumarate hydratase (Fumerase) BF28_5161 PF05683 Fumarase C-terminus BF28_5163 PF04055 Radical SAM superfamily BF28_5163 PF08756 YfkB-like domain BF28_5164 PF14167 YfkD-like protein BF28_5165 PF01699 Sodium/calcium exchanger protein BF28_5166 PF16242 Pyridoxamine 5'-phosphate oxidase like BF28_5169 PF09335 SNARE associated Golgi protein BF28_5171 PF10502 Signal peptidase, peptidase S26 BF28_5173 PF00892 EamA-like transporter family BF28_5175 PF03631 Virulence factor BrkB BF28_5177 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF28_5178 PF06569 Protein of unknown function (DUF1128) BF28_5179 PF00690 Cation transporter/ATPase, N-terminus BF28_5179 PF00689 Cation transporting ATPase, C-terminus BF28_5180 PF05816 Toxic anion resistance protein (TelA) BF28_5181 PF14266 Putative component of 'biosynthetic module' BF28_5182 PF03741 Integral membrane protein TerC family BF28_5183 PF02342 TerD domain BF28_5184 PF02342 TerD domain BF28_5185 PF02342 TerD domain BF28_5186 PF00480 ROK family BF28_5188 PF03129 Anticodon binding domain BF28_5188 PF09180 Prolyl-tRNA synthetase, C-terminal BF28_5188 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_5191 PF11700 Vacuole effluxer Atg22 like BF28_5195 PF00440 Bacterial regulatory proteins, tetR family BF28_5195 PF08360 QacR-like protein, C-terminal region BF28_5199 PF00704 Glycosyl hydrolases family 18 BF28_5199 PF00041 Fibronectin type III domain BF28_52 PF00189 Ribosomal protein S3, C-terminal domain BF28_52 PF07650 KH domain BF28_520 PF07739 TipAS antibiotic-recognition domain BF28_520 PF13411 MerR HTH family regulatory protein BF28_5200 PF12848 ABC transporter BF28_5200 PF00005 ABC transporter BF28_5202 PF00005 ABC transporter BF28_5204 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5205 PF01910 Thiamine-binding protein BF28_5206 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5206 PF00672 HAMP domain BF28_5207 PF03605 Anaerobic c4-dicarboxylate membrane transporter BF28_5209 PF02581 Thiamine monophosphate synthase BF28_5210 PF02110 Hydroxyethylthiazole kinase family BF28_5211 PF01131 DNA topoisomerase BF28_5211 PF01751 Toprim domain BF28_5212 PF01061 ABC-2 type transporter BF28_5213 PF03372 Endonuclease/Exonuclease/phosphatase family BF28_5214 PF00367 phosphotransferase system, EIIB BF28_5214 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF28_5214 PF02378 Phosphotransferase system, EIIC BF28_5215 PF00128 Alpha amylase, catalytic domain BF28_5215 PF16657 Maltogenic Amylase, C-terminal domain BF28_5216 PF02743 Cache domain BF28_5216 PF00672 HAMP domain BF28_5216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5217 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5217 PF00672 HAMP domain BF28_5217 PF12729 Four helix bundle sensory module for signal transduction BF28_5218 PF00005 ABC transporter BF28_5219 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_522 PF12344 Ultra-violet resistance protein B BF28_522 PF02151 UvrB/uvrC motif BF28_522 PF04851 Type III restriction enzyme, res subunit BF28_522 PF17757 UvrB interaction domain BF28_522 PF00271 Helicase conserved C-terminal domain BF28_5220 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5222 PF01266 FAD dependent oxidoreductase BF28_5222 PF00355 Rieske [2Fe-2S] domain BF28_5223 PF07690 Major Facilitator Superfamily BF28_5224 PF10127 RNA repair pathway DNA polymerase beta family BF28_5229 PF13426 PAS domain BF28_5229 PF13188 PAS domain BF28_5229 PF00989 PAS fold BF28_5229 PF00512 His Kinase A (phospho-acceptor) domain BF28_5229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_523 PF17755 UvrA DNA-binding domain BF28_523 PF00005 ABC transporter BF28_523 PF17760 UvrA interaction domain BF28_5235 PF12728 Helix-turn-helix domain BF28_5237 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5238 PF01497 Periplasmic binding protein BF28_5239 PF01032 FecCD transport family BF28_5240 PF01032 FecCD transport family BF28_5241 PF00596 Class II Aldolase and Adducin N-terminal domain BF28_5243 PF01636 Phosphotransferase enzyme family BF28_5244 PF00578 AhpC/TSA family BF28_5245 PF13192 Thioredoxin domain BF28_5245 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5247 PF07687 Peptidase dimerisation domain BF28_5247 PF01546 Peptidase family M20/M25/M40 BF28_525 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BF28_5250 PF13378 Enolase C-terminal domain-like BF28_5250 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF28_5253 PF07308 Protein of unknown function (DUF1456) BF28_5254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5254 PF13426 PAS domain BF28_5254 PF13188 PAS domain BF28_5254 PF00989 PAS fold BF28_5254 PF00512 His Kinase A (phospho-acceptor) domain BF28_5255 PF01207 Dihydrouridine synthase (Dus) BF28_5256 PF02475 Met-10+ like-protein BF28_5256 PF05958 tRNA (Uracil-5-)-methyltransferase BF28_5256 PF01938 TRAM domain BF28_5257 PF07670 Nucleoside recognition BF28_5257 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_5257 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_526 PF02603 HPr Serine kinase N terminus BF28_526 PF07475 HPr Serine kinase C-terminal domain BF28_5260 PF02073 Thermophilic metalloprotease (M29) BF28_5261 PF00893 Small Multidrug Resistance protein BF28_5262 PF00171 Aldehyde dehydrogenase family BF28_5263 PF00158 Sigma-54 interaction domain BF28_5264 PF00202 Aminotransferase class-III BF28_5265 PF13419 Haloacid dehalogenase-like hydrolase BF28_5267 PF00781 Diacylglycerol kinase catalytic domain BF28_5268 PF02934 GatB/GatE catalytic domain BF28_5268 PF02637 GatB domain BF28_5269 PF01425 Amidase BF28_527 PF01790 Prolipoprotein diacylglyceryl transferase BF28_5270 PF02686 Glu-tRNAGln amidotransferase C subunit BF28_5271 PF05360 yiaA/B two helix domain BF28_5272 PF01047 MarR family BF28_5273 PF17886 HSP20-like domain found in ArsA BF28_5273 PF02374 Anion-transporting ATPase BF28_5276 PF03180 NLPA lipoprotein BF28_5277 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5278 PF00005 ABC transporter BF28_5278 PF09383 NIL domain BF28_5279 PF00857 Isochorismatase family BF28_528 PF13419 Haloacid dehalogenase-like hydrolase BF28_5281 PF00171 Aldehyde dehydrogenase family BF28_5282 PF01925 Sulfite exporter TauE/SafE BF28_5283 PF07537 CamS sex pheromone cAM373 precursor BF28_5284 PF12826 Helix-hairpin-helix motif BF28_5284 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF28_5284 PF00533 BRCA1 C Terminus (BRCT) domain BF28_5284 PF01653 NAD-dependent DNA ligase adenylation domain BF28_5284 PF03120 NAD-dependent DNA ligase OB-fold domain BF28_5285 PF13361 UvrD-like helicase C-terminal domain BF28_5285 PF00580 UvrD/REP helicase N-terminal domain BF28_5286 PF01884 PcrB family BF28_529 PF14602 Hexapeptide repeat of succinyl-transferase BF28_5290 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF28_5290 PF02843 Phosphoribosylglycinamide synthetase, C domain BF28_5290 PF02844 Phosphoribosylglycinamide synthetase, N domain BF28_5291 PF02142 MGS-like domain BF28_5291 PF01808 AICARFT/IMPCHase bienzyme BF28_5292 PF00551 Formyl transferase BF28_5293 PF00586 AIR synthase related protein, N-terminal domain BF28_5293 PF02769 AIR synthase related protein, C-terminal domain BF28_5294 PF00156 Phosphoribosyl transferase domain BF28_5295 PF00586 AIR synthase related protein, N-terminal domain BF28_5295 PF02769 AIR synthase related protein, C-terminal domain BF28_5295 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BF28_5297 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BF28_5298 PF01259 SAICAR synthetase BF28_5299 PF10397 Adenylosuccinate lyase C-terminus BF28_5299 PF00206 Lyase BF28_53 PF00237 Ribosomal protein L22p/L17e BF28_5300 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BF28_5300 PF02222 ATP-grasp domain BF28_5301 PF00731 AIR carboxylase BF28_5302 PF00731 AIR carboxylase BF28_5308 PF00892 EamA-like transporter family BF28_531 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5312 PF00072 Response regulator receiver domain BF28_5312 PF00486 Transcriptional regulatory protein, C terminal BF28_5313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5313 PF00512 His Kinase A (phospho-acceptor) domain BF28_5314 PF00005 ABC transporter BF28_5316 PF02673 Bacitracin resistance protein BacA BF28_5326 PF01323 DSBA-like thioredoxin domain BF28_533 PF00293 NUDIX domain BF28_5332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5332 PF00512 His Kinase A (phospho-acceptor) domain BF28_5332 PF00989 PAS fold BF28_5332 PF16736 Single Cache-like BF28_5333 PF00072 Response regulator receiver domain BF28_5333 PF00486 Transcriptional regulatory protein, C terminal BF28_5334 PF00860 Permease family BF28_5335 PF00117 Glutamine amidotransferase class-I BF28_5335 PF00958 GMP synthase C terminal domain BF28_5335 PF02540 NAD synthase BF28_5337 PF04740 LXG domain of WXG superfamily BF28_5337 PF14449 Pre-toxin TG BF28_5338 PF00118 TCP-1/cpn60 chaperonin family BF28_5339 PF00166 Chaperonin 10 Kd subunit BF28_534 PF03668 P-loop ATPase protein family BF28_5340 PF02517 CPBP intramembrane metalloprotease BF28_5342 PF06971 Putative DNA-binding protein N-terminus BF28_5342 PF02629 CoA binding domain BF28_5343 PF00005 ABC transporter BF28_5343 PF12848 ABC transporter BF28_5343 PF16326 ABC transporter C-terminal domain BF28_5344 PF00814 Glycoprotease family BF28_5345 PF00583 Acetyltransferase (GNAT) family BF28_5346 PF00814 Glycoprotease family BF28_5347 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BF28_535 PF01933 Uncharacterised protein family UPF0052 BF28_536 PF10298 WhiA N-terminal LAGLIDADG-like domain BF28_536 PF14527 WhiA LAGLIDADG-like domain BF28_536 PF02650 WhiA C-terminal HTH domain BF28_5365 PF10263 SprT-like family BF28_5365 PF17283 SprT-like zinc ribbon domain BF28_5366 PF09371 Tex-like protein N-terminal domain BF28_5366 PF17674 HHH domain BF28_5366 PF00575 S1 RNA binding domain BF28_5366 PF16921 Tex protein YqgF-like domain BF28_5367 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BF28_5368 PF01402 Ribbon-helix-helix protein, copG family BF28_5369 PF00842 Alanine racemase, C-terminal domain BF28_5369 PF01168 Alanine racemase, N-terminal domain BF28_537 PF00381 PTS HPr component phosphorylation site BF28_5371 PF01648 4'-phosphopantetheinyl transferase superfamily BF28_5372 PF03851 UV-endonuclease UvdE BF28_5373 PF01694 Rhomboid family BF28_5374 PF00270 DEAD/DEAH box helicase BF28_5374 PF00271 Helicase conserved C-terminal domain BF28_5375 PF01225 Mur ligase family, catalytic domain BF28_5375 PF08245 Mur ligase middle domain BF28_5375 PF02875 Mur ligase family, glutamate ligase domain BF28_5376 PF07478 D-ala D-ala ligase C-terminus BF28_5376 PF01820 D-ala D-ala ligase N-terminus BF28_5379 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF28_538 PF00574 Clp protease BF28_5380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5387 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5387 PF00005 ABC transporter BF28_5388 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5388 PF00005 ABC transporter BF28_539 PF04239 Protein of unknown function (DUF421) BF28_5390 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5391 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5395 PF00005 ABC transporter BF28_5395 PF16326 ABC transporter C-terminal domain BF28_5395 PF12848 ABC transporter BF28_5399 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BF28_54 PF00203 Ribosomal protein S19 BF28_5401 PF01026 TatD related DNase BF28_5404 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_5404 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_5406 PF00356 Bacterial regulatory proteins, lacI family BF28_5406 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF28_5408 PF01553 Acyltransferase BF28_541 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF28_5410 PF14142 YrzO-like protein BF28_5411 PF00892 EamA-like transporter family BF28_5412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_5412 PF03466 LysR substrate binding domain BF28_5415 PF12727 PBP superfamily domain BF28_5415 PF12728 Helix-turn-helix domain BF28_5417 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5418 PF06800 Sugar transport protein BF28_5419 PF04973 Nicotinamide mononucleotide transporter BF28_542 PF07451 Stage V sporulation protein AD (SpoVAD) BF28_5421 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_5421 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_5422 PF00248 Aldo/keto reductase family BF28_5423 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5424 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5426 PF00440 Bacterial regulatory proteins, tetR family BF28_5428 PF12833 Helix-turn-helix domain BF28_543 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF28_5430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5431 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5431 PF00005 ABC transporter BF28_5432 PF00005 ABC transporter BF28_5432 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5433 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5433 PF12911 N-terminal TM domain of oligopeptide transport permease C BF28_5434 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5437 PF07690 Major Facilitator Superfamily BF28_5439 PF07690 Major Facilitator Superfamily BF28_5440 PF01565 FAD binding domain BF28_5443 PF03180 NLPA lipoprotein BF28_5444 PF00005 ABC transporter BF28_5444 PF09383 NIL domain BF28_5445 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5452 PF00326 Prolyl oligopeptidase family BF28_5452 PF07676 WD40-like Beta Propeller Repeat BF28_5453 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_5453 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF28_5454 PF02447 GntP family permease BF28_5455 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_5455 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_5456 PF00392 Bacterial regulatory proteins, gntR family BF28_5456 PF07729 FCD domain BF28_5457 PF00561 alpha/beta hydrolase fold BF28_5458 PF01380 SIS domain BF28_5459 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF28_5459 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF28_5459 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF28_5459 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF28_5461 PF07282 Putative transposase DNA-binding domain BF28_5461 PF01385 Probable transposase BF28_5461 PF12323 Helix-turn-helix domain BF28_5463 PF00092 von Willebrand factor type A domain BF28_5466 PF01751 Toprim domain BF28_5466 PF01131 DNA topoisomerase BF28_5471 PF00155 Aminotransferase class I and II BF28_5474 PF12169 DNA polymerase III subunits gamma and tau domain III BF28_548 PF18801 response regulator aspartate phosphatase H, N terminal BF28_548 PF17874 MalT-like TPR region BF28_5480 PF13276 HTH-like domain BF28_5480 PF13333 Integrase core domain BF28_5480 PF00665 Integrase core domain BF28_5481 PF04962 KduI/IolB family BF28_5482 PF01116 Fructose-bisphosphate aldolase class-II BF28_5483 PF00356 Bacterial regulatory proteins, lacI family BF28_5484 PF01261 Xylose isomerase-like TIM barrel BF28_5485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_5485 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_5485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_5486 PF00171 Aldehyde dehydrogenase family BF28_5487 PF00294 pfkB family carbohydrate kinase BF28_5488 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_5488 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_5489 PF07690 Major Facilitator Superfamily BF28_5490 PF00356 Bacterial regulatory proteins, lacI family BF28_5491 PF00356 Bacterial regulatory proteins, lacI family BF28_5492 PF00083 Sugar (and other) transporter BF28_5493 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_5493 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_55 PF00181 Ribosomal Proteins L2, RNA binding domain BF28_55 PF03947 Ribosomal Proteins L2, C-terminal domain BF28_5505 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF28_5505 PF00753 Metallo-beta-lactamase superfamily BF28_5510 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BF28_5510 PF18416 N-acetylglucosamine binding protein domain 2 BF28_5513 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_5514 PF00672 HAMP domain BF28_5514 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5515 PF01385 Probable transposase BF28_5515 PF12323 Helix-turn-helix domain BF28_5515 PF07282 Putative transposase DNA-binding domain BF28_5519 PF04657 Putative inner membrane exporter, YdcZ BF28_552 PF04963 Sigma-54 factor, core binding domain BF28_552 PF00309 Sigma-54 factor, Activator interacting domain (AID) BF28_552 PF04552 Sigma-54, DNA binding domain BF28_5520 PF01180 Dihydroorotate dehydrogenase BF28_5521 PF01180 Dihydroorotate dehydrogenase BF28_5524 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5524 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BF28_5525 PF13419 Haloacid dehalogenase-like hydrolase BF28_5526 PF01588 Putative tRNA binding domain BF28_5527 PF00892 EamA-like transporter family BF28_5529 PF00293 NUDIX domain BF28_5529 PF13344 Haloacid dehalogenase-like hydrolase BF28_554 PF04198 Putative sugar-binding domain BF28_5542 PF04229 GrpB protein BF28_5542 PF13673 Acetyltransferase (GNAT) domain BF28_5544 PF04002 RadC-like JAB domain BF28_5547 PF03725 3' exoribonuclease family, domain 2 BF28_5547 PF01138 3' exoribonuclease family, domain 1 BF28_5547 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF28_5547 PF00013 KH domain BF28_5547 PF00575 S1 RNA binding domain BF28_555 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_555 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF28_5555 PF00877 NlpC/P60 family BF28_556 PF00162 Phosphoglycerate kinase BF28_557 PF00121 Triosephosphate isomerase BF28_5576 PF04539 Sigma-70 region 3 BF28_5576 PF00140 Sigma-70 factor, region 1.2 BF28_5576 PF03979 Sigma-70 factor, region 1.1 BF28_5576 PF04542 Sigma-70 region 2 BF28_5576 PF04545 Sigma-70, region 4 BF28_558 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF28_558 PF01676 Metalloenzyme superfamily BF28_5582 PF10502 Signal peptidase, peptidase S26 BF28_559 PF03952 Enolase, N-terminal domain BF28_559 PF00113 Enolase, C-terminal TIM barrel domain BF28_5592 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF28_5594 PF13276 HTH-like domain BF28_5594 PF13333 Integrase core domain BF28_5594 PF00665 Integrase core domain BF28_5596 PF07972 NrdI Flavodoxin like BF28_56 PF00276 Ribosomal protein L23 BF28_560 PF01156 Inosine-uridine preferring nucleoside hydrolase BF28_5604 PF10676 Spore germination protein gerPA/gerPF BF28_5608 PF07282 Putative transposase DNA-binding domain BF28_5608 PF12323 Helix-turn-helix domain BF28_5608 PF01385 Probable transposase BF28_561 PF03788 LrgA family BF28_5611 PF07282 Putative transposase DNA-binding domain BF28_5611 PF01385 Probable transposase BF28_5611 PF12323 Helix-turn-helix domain BF28_5617 PF09335 SNARE associated Golgi protein BF28_5619 PF00072 Response regulator receiver domain BF28_5619 PF00486 Transcriptional regulatory protein, C terminal BF28_562 PF04172 LrgB-like family BF28_5620 PF01522 Polysaccharide deacetylase BF28_5621 PF04914 DltD protein BF28_5627 PF00589 Phage integrase family BF28_563 PF03840 Preprotein translocase SecG subunit BF28_5638 PF01638 HxlR-like helix-turn-helix BF28_5639 PF00925 GTP cyclohydrolase II BF28_564 PF12146 Serine aminopeptidase, S33 BF28_5640 PF01872 RibD C-terminal domain BF28_5640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_5643 PF01022 Bacterial regulatory protein, arsR family BF28_5644 PF07486 Cell Wall Hydrolase BF28_5645 PF08453 Peptidase family M9 N-terminal BF28_5645 PF01752 Collagenase BF28_5645 PF18496 Collagenase G catalytic helper subdomain BF28_565 PF17876 Cold shock domain BF28_565 PF08206 Ribonuclease B OB domain BF28_565 PF00773 RNB domain BF28_565 PF00575 S1 RNA binding domain BF28_5651 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_5652 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_5654 PF03845 Spore germination protein BF28_5655 PF03845 Spore germination protein BF28_5656 PF05199 GMC oxidoreductase BF28_5656 PF00732 GMC oxidoreductase BF28_566 PF01668 SmpB protein BF28_5663 PF04239 Protein of unknown function (DUF421) BF28_5664 PF13529 Peptidase_C39 like family BF28_567 PF00486 Transcriptional regulatory protein, C terminal BF28_567 PF00072 Response regulator receiver domain BF28_5675 PF17209 Hfq protein BF28_5676 PF01609 Transposase DDE domain BF28_5678 PF01609 Transposase DDE domain BF28_5679 PF01609 Transposase DDE domain BF28_569 PF01032 FecCD transport family BF28_5690 PF03838 Recombination protein U BF28_5695 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5695 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5696 PF00144 Beta-lactamase BF28_5697 PF00144 Beta-lactamase BF28_5699 PF12146 Serine aminopeptidase, S33 BF28_5699 PF13026 Protein of unknown function (DUF3887) BF28_57 PF00573 Ribosomal protein L4/L1 family BF28_570 PF01032 FecCD transport family BF28_5702 PF00854 POT family BF28_5704 PF12323 Helix-turn-helix domain BF28_5704 PF01385 Probable transposase BF28_5704 PF07282 Putative transposase DNA-binding domain BF28_5705 PF00392 Bacterial regulatory proteins, gntR family BF28_5705 PF00155 Aminotransferase class I and II BF28_5706 PF00892 EamA-like transporter family BF28_5708 PF01270 Glycosyl hydrolases family 8 BF28_571 PF00005 ABC transporter BF28_5714 PF01522 Polysaccharide deacetylase BF28_5719 PF01609 Transposase DDE domain BF28_5720 PF01494 FAD binding domain BF28_5721 PF00440 Bacterial regulatory proteins, tetR family BF28_5722 PF02796 Helix-turn-helix domain of resolvase BF28_5722 PF00239 Resolvase, N terminal domain BF28_5723 PF00665 Integrase core domain BF28_5723 PF09299 Mu transposase, C-terminal BF28_5724 PF13401 AAA domain BF28_5725 PF01609 Transposase DDE domain BF28_5726 PF13700 Domain of unknown function (DUF4158) BF28_5726 PF01526 Tn3 transposase DDE domain BF28_5727 PF00239 Resolvase, N terminal domain BF28_5727 PF02796 Helix-turn-helix domain of resolvase BF28_5728 PF17932 Tetracyclin repressor-like, C-terminal domain BF28_5728 PF00440 Bacterial regulatory proteins, tetR family BF28_5729 PF07690 Major Facilitator Superfamily BF28_573 PF01047 MarR family BF28_5731 PF02687 FtsX-like permease family BF28_5731 PF12704 MacB-like periplasmic core domain BF28_5731 PF00005 ABC transporter BF28_5733 PF01609 Transposase DDE domain BF28_5744 PF13333 Integrase core domain BF28_5744 PF00665 Integrase core domain BF28_5744 PF13276 HTH-like domain BF28_5745 PF13276 HTH-like domain BF28_5745 PF13333 Integrase core domain BF28_5745 PF00665 Integrase core domain BF28_5749 PF13333 Integrase core domain BF28_5749 PF00665 Integrase core domain BF28_5750 PF02028 BCCT, betaine/carnitine/choline family transporter BF28_5753 PF07282 Putative transposase DNA-binding domain BF28_5753 PF01385 Probable transposase BF28_5753 PF12323 Helix-turn-helix domain BF28_5754 PF01609 Transposase DDE domain BF28_5755 PF01609 Transposase DDE domain BF28_5759 PF13495 Phage integrase, N-terminal SAM-like domain BF28_5759 PF00589 Phage integrase family BF28_576 PF06146 Phosphate-starvation-inducible E BF28_577 PF13302 Acetyltransferase (GNAT) domain BF28_5774 PF00005 ABC transporter BF28_5774 PF03412 Peptidase C39 family BF28_5774 PF00664 ABC transporter transmembrane region BF28_5775 PF00085 Thioredoxin BF28_5776 PF02600 Disulfide bond formation protein DsbB BF28_5777 PF13495 Phage integrase, N-terminal SAM-like domain BF28_5777 PF00589 Phage integrase family BF28_5779 PF02743 Cache domain BF28_5779 PF00672 HAMP domain BF28_5779 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5795 PF02796 Helix-turn-helix domain of resolvase BF28_5795 PF00239 Resolvase, N terminal domain BF28_58 PF00297 Ribosomal protein L3 BF28_580 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF28_5800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF28_581 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF28_5815 PF01609 Transposase DDE domain BF28_5826 PF07282 Putative transposase DNA-binding domain BF28_5826 PF12323 Helix-turn-helix domain BF28_5826 PF01385 Probable transposase BF28_5827 PF03831 PhnA domain BF28_5827 PF08274 PhnA Zinc-Ribbon BF28_5828 PF00550 Phosphopantetheine attachment site BF28_583 PF00672 HAMP domain BF28_583 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_583 PF17202 Single cache domain 3 BF28_5830 PF01740 STAS domain BF28_5830 PF00916 Sulfate permease family BF28_5832 PF01022 Bacterial regulatory protein, arsR family BF28_5835 PF00535 Glycosyl transferase family 2 BF28_5838 PF01609 Transposase DDE domain BF28_5839 PF01609 Transposase DDE domain BF28_5840 PF01609 Transposase DDE domain BF28_5841 PF01609 Transposase DDE domain BF28_5843 PF00145 C-5 cytosine-specific DNA methylase BF28_5843 PF01381 Helix-turn-helix BF28_585 PF01565 FAD binding domain BF28_585 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF28_5851 PF01609 Transposase DDE domain BF28_5852 PF01609 Transposase DDE domain BF28_5853 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_5853 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_5854 PF07977 FabA-like domain BF28_5855 PF02660 Glycerol-3-phosphate acyltransferase BF28_5857 PF02567 Phenazine biosynthesis-like protein BF28_586 PF01479 S4 domain BF28_586 PF00579 tRNA synthetases class I (W and Y) BF28_5860 PF00589 Phage integrase family BF28_5862 PF01609 Transposase DDE domain BF28_5864 PF04239 Protein of unknown function (DUF421) BF28_5866 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF28_5868 PF12323 Helix-turn-helix domain BF28_5868 PF07282 Putative transposase DNA-binding domain BF28_5868 PF01385 Probable transposase BF28_587 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5871 PF12323 Helix-turn-helix domain BF28_5871 PF01385 Probable transposase BF28_5871 PF07282 Putative transposase DNA-binding domain BF28_5874 PF01569 PAP2 superfamily BF28_588 PF07849 Protein of unknown function (DUF1641) BF28_5881 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF28_5882 PF01385 Probable transposase BF28_5882 PF12323 Helix-turn-helix domain BF28_5882 PF07282 Putative transposase DNA-binding domain BF28_5883 PF00149 Calcineurin-like phosphoesterase BF28_5889 PF01209 ubiE/COQ5 methyltransferase family BF28_589 PF01638 HxlR-like helix-turn-helix BF28_5892 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF28_5892 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF28_5893 PF05853 beta-keto acid cleavage enzyme BF28_5896 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_5896 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5896 PF03413 Peptidase propeptide and YPEB domain BF28_5896 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5897 PF12729 Four helix bundle sensory module for signal transduction BF28_5897 PF00672 HAMP domain BF28_5897 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_59 PF00338 Ribosomal protein S10p/S20e BF28_590 PF07690 Major Facilitator Superfamily BF28_5900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5900 PF13426 PAS domain BF28_5900 PF08447 PAS fold BF28_5901 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5901 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5901 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_5901 PF03413 Peptidase propeptide and YPEB domain BF28_5909 PF06800 Sugar transport protein BF28_591 PF00248 Aldo/keto reductase family BF28_5910 PF01738 Dienelactone hydrolase family BF28_5911 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5912 PF01613 Flavin reductase like domain BF28_5913 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5914 PF01047 MarR family BF28_5916 PF07690 Major Facilitator Superfamily BF28_5918 PF01609 Transposase DDE domain BF28_5919 PF00107 Zinc-binding dehydrogenase BF28_5919 PF08240 Alcohol dehydrogenase GroES-like domain BF28_5920 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BF28_5920 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BF28_5921 PF10509 Galactokinase galactose-binding signature BF28_5921 PF08544 GHMP kinases C terminal BF28_5921 PF00288 GHMP kinases N terminal domain BF28_5922 PF01263 Aldose 1-epimerase BF28_5923 PF12833 Helix-turn-helix domain BF28_5923 PF02311 AraC-like ligand binding domain BF28_5924 PF02278 Polysaccharide lyase family 8, super-sandwich domain BF28_5924 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain BF28_5924 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain BF28_5925 PF01301 Glycosyl hydrolases family 35 BF28_5926 PF07470 Glycosyl Hydrolase Family 88 BF28_5927 PF03610 PTS system fructose IIA component BF28_5927 PF03830 PTS system sorbose subfamily IIB component BF28_5928 PF03613 PTS system mannose/fructose/sorbose family IID component BF28_5929 PF03609 PTS system sorbose-specific iic component BF28_5932 PF04962 KduI/IolB family BF28_5933 PF00294 pfkB family carbohydrate kinase BF28_5935 PF01614 Bacterial transcriptional regulator BF28_5937 PF04307 LexA-binding, inner membrane-associated putative hydrolase BF28_5939 PF18801 response regulator aspartate phosphatase H, N terminal BF28_594 PF13460 NAD(P)H-binding BF28_5940 PF12323 Helix-turn-helix domain BF28_5940 PF01385 Probable transposase BF28_5940 PF07282 Putative transposase DNA-binding domain BF28_5943 PF06445 GyrI-like small molecule binding domain BF28_5943 PF13411 MerR HTH family regulatory protein BF28_5946 PF13276 HTH-like domain BF28_5946 PF00665 Integrase core domain BF28_5946 PF13333 Integrase core domain BF28_595 PF01235 Sodium:alanine symporter family BF28_5950 PF13614 AAA domain BF28_5955 PF13411 MerR HTH family regulatory protein BF28_5955 PF13152 Protein of unknown function (DUF3967) BF28_596 PF01235 Sodium:alanine symporter family BF28_5963 PF01526 Tn3 transposase DDE domain BF28_5963 PF13700 Domain of unknown function (DUF4158) BF28_5969 PF00589 Phage integrase family BF28_597 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_597 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_5973 PF18277 AbrB C-terminal domain BF28_5973 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF28_5976 PF01609 Transposase DDE domain BF28_5979 PF13276 HTH-like domain BF28_5979 PF13333 Integrase core domain BF28_5979 PF00665 Integrase core domain BF28_598 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_598 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_5981 PF11799 impB/mucB/samB family C-terminal domain BF28_5981 PF11798 IMS family HHH motif BF28_5981 PF00817 impB/mucB/samB family BF28_5982 PF01609 Transposase DDE domain BF28_5984 PF01925 Sulfite exporter TauE/SafE BF28_5986 PF12996 DUF based on E. rectale Gene description (DUF3880) BF28_5989 PF01297 Zinc-uptake complex component A periplasmic BF28_5990 PF00950 ABC 3 transport family BF28_5991 PF00005 ABC transporter BF28_5992 PF02796 Helix-turn-helix domain of resolvase BF28_5992 PF00239 Resolvase, N terminal domain BF28_60 PF00009 Elongation factor Tu GTP binding domain BF28_60 PF03144 Elongation factor Tu domain 2 BF28_60 PF03143 Elongation factor Tu C-terminal domain BF28_600 PF00210 Ferritin-like domain BF28_6002 PF02796 Helix-turn-helix domain of resolvase BF28_6002 PF00239 Resolvase, N terminal domain BF28_6017 PF12802 MarR family BF28_6018 PF01381 Helix-turn-helix BF28_6019 PF01381 Helix-turn-helix BF28_602 PF03641 Possible lysine decarboxylase BF28_6020 PF13152 Protein of unknown function (DUF3967) BF28_6020 PF13411 MerR HTH family regulatory protein BF28_6022 PF00589 Phage integrase family BF28_6026 PF01076 Plasmid recombination enzyme BF28_6033 PF01076 Plasmid recombination enzyme BF28_6039 PF01076 Plasmid recombination enzyme BF28_605 PF00210 Ferritin-like domain BF28_606 PF01235 Sodium:alanine symporter family BF28_607 PF02080 TrkA-C domain BF28_608 PF00999 Sodium/hydrogen exchanger family BF28_61 PF03144 Elongation factor Tu domain 2 BF28_61 PF00009 Elongation factor Tu GTP binding domain BF28_61 PF03764 Elongation factor G, domain IV BF28_61 PF14492 Elongation Factor G, domain II BF28_61 PF00679 Elongation factor G C-terminus BF28_611 PF02678 Pirin BF28_611 PF17954 Quercetinase C-terminal cupin domain BF28_612 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_612 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_612 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_612 PF03413 Peptidase propeptide and YPEB domain BF28_613 PF01883 Iron-sulfur cluster assembly protein BF28_614 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_614 PF02743 Cache domain BF28_614 PF00672 HAMP domain BF28_615 PF02743 Cache domain BF28_615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_615 PF00672 HAMP domain BF28_619 PF16736 Single Cache-like BF28_619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_619 PF00989 PAS fold BF28_619 PF00512 His Kinase A (phospho-acceptor) domain BF28_62 PF00177 Ribosomal protein S7p/S5e BF28_620 PF00486 Transcriptional regulatory protein, C terminal BF28_620 PF00072 Response regulator receiver domain BF28_621 PF17969 L,D-transpeptidase C-terminal domain BF28_621 PF03734 L,D-transpeptidase catalytic domain BF28_623 PF09335 SNARE associated Golgi protein BF28_629 PF00005 ABC transporter BF28_63 PF00164 Ribosomal protein S12/S23 BF28_631 PF12679 ABC-2 family transporter protein BF28_632 PF00486 Transcriptional regulatory protein, C terminal BF28_632 PF00072 Response regulator receiver domain BF28_633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_633 PF13426 PAS domain BF28_633 PF00512 His Kinase A (phospho-acceptor) domain BF28_633 PF00672 HAMP domain BF28_636 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_636 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_638 PF02096 60Kd inner membrane protein BF28_64 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF28_641 PF13520 Amino acid permease BF28_642 PF07690 Major Facilitator Superfamily BF28_646 PF02743 Cache domain BF28_646 PF00672 HAMP domain BF28_646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_647 PF01910 Thiamine-binding protein BF28_648 PF10835 Protein of unknown function (DUF2573) BF28_649 PF01619 Proline dehydrogenase BF28_65 PF04998 RNA polymerase Rpb1, domain 5 BF28_65 PF04983 RNA polymerase Rpb1, domain 3 BF28_65 PF00623 RNA polymerase Rpb1, domain 2 BF28_65 PF05000 RNA polymerase Rpb1, domain 4 BF28_65 PF04997 RNA polymerase Rpb1, domain 1 BF28_650 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_650 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_651 PF14115 YuzL-like protein BF28_652 PF00378 Enoyl-CoA hydratase/isomerase BF28_652 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF28_652 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF28_653 PF02803 Thiolase, C-terminal domain BF28_653 PF00108 Thiolase, N-terminal domain BF28_654 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_654 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_654 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_655 PF00753 Metallo-beta-lactamase superfamily BF28_656 PF13305 Tetracyclin repressor-like, C-terminal domain BF28_656 PF00440 Bacterial regulatory proteins, tetR family BF28_657 PF08671 Anti-repressor SinI BF28_657 PF01381 Helix-turn-helix BF28_66 PF10385 RNA polymerase beta subunit external 1 domain BF28_66 PF00562 RNA polymerase Rpb2, domain 6 BF28_66 PF04563 RNA polymerase beta subunit BF28_66 PF04561 RNA polymerase Rpb2, domain 2 BF28_66 PF04565 RNA polymerase Rpb2, domain 3 BF28_66 PF04560 RNA polymerase Rpb2, domain 7 BF28_662 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_662 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_668 PF03960 ArsC family BF28_669 PF01597 Glycine cleavage H-protein BF28_67 PF05175 Methyltransferase small domain BF28_670 PF01751 Toprim domain BF28_671 PF00085 Thioredoxin BF28_673 PF00005 ABC transporter BF28_673 PF09383 NIL domain BF28_674 PF00528 Binding-protein-dependent transport system inner membrane component BF28_675 PF03180 NLPA lipoprotein BF28_676 PF03180 NLPA lipoprotein BF28_677 PF00005 ABC transporter BF28_678 PF01458 Uncharacterized protein family (UPF0051) BF28_679 PF00266 Aminotransferase class-V BF28_68 PF16320 Ribosomal protein L7/L12 dimerisation domain BF28_68 PF00542 Ribosomal protein L7/L12 C-terminal domain BF28_680 PF01592 NifU-like N terminal domain BF28_681 PF01458 Uncharacterized protein family (UPF0051) BF28_682 PF02872 5'-nucleotidase, C-terminal domain BF28_683 PF08827 Domain of unknown function (DUF1805) BF28_685 PF01551 Peptidase family M23 BF28_686 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BF28_686 PF04055 Radical SAM superfamily BF28_69 PF00466 Ribosomal protein L10 BF28_690 PF10086 YhfC intramembrane metalloprotease BF28_691 PF07739 TipAS antibiotic-recognition domain BF28_691 PF13411 MerR HTH family regulatory protein BF28_692 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF28_693 PF06265 Protein of unknown function (DUF1027) BF28_696 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF28_697 PF01934 Protein of unknown function DUF86 BF28_699 PF13344 Haloacid dehalogenase-like hydrolase BF28_70 PF00687 Ribosomal protein L1p/L10e family BF28_701 PF02525 Flavodoxin-like fold BF28_703 PF04608 Phosphatidylglycerophosphatase A BF28_706 PF01106 NifU-like domain BF28_707 PF07315 Protein of unknown function (DUF1462) BF28_71 PF03946 Ribosomal protein L11, N-terminal domain BF28_71 PF00298 Ribosomal protein L11, RNA binding domain BF28_710 PF03831 PhnA domain BF28_710 PF08274 PhnA Zinc-Ribbon BF28_711 PF03649 Uncharacterised protein family (UPF0014) BF28_712 PF03412 Peptidase C39 family BF28_712 PF00005 ABC transporter BF28_712 PF00664 ABC transporter transmembrane region BF28_713 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_714 PF07293 Protein of unknown function (DUF1450) BF28_715 PF01678 Diaminopimelate epimerase BF28_716 PF01521 Iron-sulphur cluster biosynthesis BF28_719 PF04463 Protein of unknown function (DUF523) BF28_72 PF02357 Transcription termination factor nusG BF28_72 PF00467 KOW motif BF28_722 PF06445 GyrI-like small molecule binding domain BF28_724 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_725 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_726 PF00293 NUDIX domain BF28_726 PF13344 Haloacid dehalogenase-like hydrolase BF28_728 PF06725 3D domain BF28_729 PF00883 Cytosol aminopeptidase family, catalytic domain BF28_729 PF02789 Cytosol aminopeptidase family, N-terminal domain BF28_73 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BF28_730 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF28_730 PF10372 Bacterial membrane-spanning protein N-terminus BF28_731 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF28_731 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF28_731 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF28_731 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF28_732 PF00483 Nucleotidyl transferase BF28_733 PF02632 BioY family BF28_735 PF03061 Thioesterase superfamily BF28_736 PF03129 Anticodon binding domain BF28_736 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_739 PF03600 Citrate transporter BF28_74 PF04542 Sigma-70 region 2 BF28_74 PF08281 Sigma-70, region 4 BF28_740 PF00929 Exonuclease BF28_741 PF08810 Kinase associated protein B BF28_744 PF00155 Aminotransferase class I and II BF28_746 PF00561 alpha/beta hydrolase fold BF28_746 PF08386 TAP-like protein BF28_747 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF28_747 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF28_748 PF01037 Lrp/AsnC ligand binding domain BF28_749 PF00155 Aminotransferase class I and II BF28_75 PF05991 YacP-like NYN domain BF28_750 PF00575 S1 RNA binding domain BF28_751 PF04070 Domain of unknown function (DUF378) BF28_752 PF00342 Phosphoglucose isomerase BF28_753 PF07885 Ion channel BF28_753 PF02254 TrkA-N domain BF28_754 PF08868 YugN-like family BF28_755 PF02308 MgtC family BF28_76 PF00588 SpoU rRNA Methylase family BF28_76 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF28_763 PF05698 Bacterial trigger factor protein (TF) C-terminus BF28_763 PF05697 Bacterial trigger factor protein (TF) BF28_77 PF00636 Ribonuclease III domain BF28_78 PF09190 DALR domain BF28_78 PF01406 tRNA synthetases class I (C) catalytic domain BF28_782 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_782 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_784 PF05922 Peptidase inhibitor I9 BF28_784 PF02225 PA domain BF28_784 PF00082 Subtilase family BF28_784 PF13860 FlgD Ig-like domain BF28_786 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF28_786 PF02806 Alpha amylase, C-terminal all-beta domain BF28_786 PF00128 Alpha amylase, catalytic domain BF28_787 PF00483 Nucleotidyl transferase BF28_788 PF00483 Nucleotidyl transferase BF28_789 PF00534 Glycosyl transferases group 1 BF28_789 PF08323 Starch synthase catalytic domain BF28_79 PF06426 Serine acetyltransferase, N-terminal BF28_79 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_790 PF00343 Carbohydrate phosphorylase BF28_794 PF00313 'Cold-shock' DNA-binding domain BF28_795 PF01258 Prokaryotic dksA/traR C4-type zinc finger BF28_796 PF01040 UbiA prenyltransferase family BF28_797 PF00425 chorismate binding enzyme BF28_798 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_798 PF16582 Middle domain of thiamine pyrophosphate BF28_798 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_799 PF00561 alpha/beta hydrolase fold BF28_80 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF28_800 PF00378 Enoyl-CoA hydratase/isomerase BF28_801 PF13193 AMP-binding enzyme C-terminal domain BF28_801 PF00501 AMP-binding enzyme BF28_802 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF28_802 PF13378 Enolase C-terminal domain-like BF28_803 PF00072 Response regulator receiver domain BF28_803 PF00486 Transcriptional regulatory protein, C terminal BF28_804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_804 PF00512 His Kinase A (phospho-acceptor) domain BF28_805 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_806 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_807 PF00860 Permease family BF28_808 PF03466 LysR substrate binding domain BF28_808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_809 PF01979 Amidohydrolase family BF28_81 PF02542 YgbB family BF28_810 PF03841 L-seryl-tRNA selenium transferase BF28_811 PF07071 KDGP aldolase BF28_814 PF02447 GntP family permease BF28_816 PF02687 FtsX-like permease family BF28_817 PF00005 ABC transporter BF28_818 PF02687 FtsX-like permease family BF28_819 PF02687 FtsX-like permease family BF28_82 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF28_820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_821 PF00072 Response regulator receiver domain BF28_821 PF00486 Transcriptional regulatory protein, C terminal BF28_822 PF01022 Bacterial regulatory protein, arsR family BF28_823 PF07853 Protein of unknown function (DUF1648) BF28_823 PF13630 SdpI/YhfL protein family BF28_824 PF00005 ABC transporter BF28_826 PF12833 Helix-turn-helix domain BF28_826 PF06445 GyrI-like small molecule binding domain BF28_827 PF00005 ABC transporter BF28_828 PF02687 FtsX-like permease family BF28_830 PF12833 Helix-turn-helix domain BF28_830 PF02311 AraC-like ligand binding domain BF28_831 PF00398 Ribosomal RNA adenine dimethylase BF28_832 PF09335 SNARE associated Golgi protein BF28_838 PF00781 Diacylglycerol kinase catalytic domain BF28_84 PF10635 DisA bacterial checkpoint controller linker region BF28_84 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF28_844 PF00486 Transcriptional regulatory protein, C terminal BF28_844 PF00072 Response regulator receiver domain BF28_845 PF00672 HAMP domain BF28_845 PF00512 His Kinase A (phospho-acceptor) domain BF28_845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_846 PF09515 Thiamine transporter protein (Thia_YuaJ) BF28_848 PF07670 Nucleoside recognition BF28_848 PF17910 FeoB cytosolic helical domain BF28_848 PF07664 Ferrous iron transport protein B C terminus BF28_848 PF02421 Ferrous iron transport protein B BF28_85 PF18073 Rubredoxin metal binding domain BF28_851 PF04012 PspA/IM30 family BF28_856 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_856 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF28_859 PF10676 Spore germination protein gerPA/gerPF BF28_86 PF17871 AAA lid domain BF28_86 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_86 PF02861 Clp amino terminal domain, pathogenicity island component BF28_86 PF07724 AAA domain (Cdc48 subfamily) BF28_86 PF00004 ATPase family associated with various cellular activities (AAA) BF28_860 PF02322 Cytochrome bd terminal oxidase subunit II BF28_861 PF01654 Cytochrome bd terminal oxidase subunit I BF28_862 PF01809 Putative membrane protein insertion efficiency factor BF28_863 PF00484 Carbonic anhydrase BF28_864 PF02664 S-Ribosylhomocysteinase (LuxS) BF28_867 PF00293 NUDIX domain BF28_869 PF13419 Haloacid dehalogenase-like hydrolase BF28_87 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BF28_872 PF00528 Binding-protein-dependent transport system inner membrane component BF28_873 PF00005 ABC transporter BF28_877 PF00884 Sulfatase BF28_878 PF00561 alpha/beta hydrolase fold BF28_878 PF08386 TAP-like protein BF28_879 PF08447 PAS fold BF28_879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_879 PF00512 His Kinase A (phospho-acceptor) domain BF28_879 PF00989 PAS fold BF28_88 PF02151 UvrB/uvrC motif BF28_880 PF13188 PAS domain BF28_880 PF13426 PAS domain BF28_880 PF00512 His Kinase A (phospho-acceptor) domain BF28_880 PF00989 PAS fold BF28_880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_881 PF13419 Haloacid dehalogenase-like hydrolase BF28_882 PF00455 DeoR C terminal sensor domain BF28_882 PF08220 DeoR-like helix-turn-helix domain BF28_883 PF13419 Haloacid dehalogenase-like hydrolase BF28_884 PF01784 NIF3 (NGG1p interacting factor 3) BF28_89 PF05848 CtsR N-terminal HTH domain BF28_89 PF17727 CtsR C-terminal dimerization domain BF28_890 PF01293 Phosphoenolpyruvate carboxykinase BF28_891 PF02772 S-adenosylmethionine synthetase, central domain BF28_891 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF28_891 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF28_892 PF13302 Acetyltransferase (GNAT) domain BF28_895 PF00994 Probable molybdopterin binding domain BF28_896 PF12804 MobA-like NTP transferase domain BF28_897 PF13439 Glycosyltransferase Family 4 BF28_897 PF00534 Glycosyl transferases group 1 BF28_898 PF01569 PAP2 superfamily BF28_899 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_900 PF12146 Serine aminopeptidase, S33 BF28_901 PF10776 Protein of unknown function (DUF2600) BF28_904 PF10026 Predicted Zn-dependent protease (DUF2268) BF28_906 PF01177 Asp/Glu/Hydantoin racemase BF28_908 PF00005 ABC transporter BF28_908 PF13732 Domain of unknown function (DUF4162) BF28_909 PF06962 Putative rRNA methylase BF28_910 PF04055 Radical SAM superfamily BF28_910 PF16199 Radical_SAM C-terminal domain BF28_911 PF10732 Protein of unknown function (DUF2524) BF28_913 PF07786 Protein of unknown function (DUF1624) BF28_913 PF04235 Protein of unknown function (DUF418) BF28_914 PF00005 ABC transporter BF28_916 PF00589 Phage integrase family BF28_917 PF02080 TrkA-C domain BF28_918 PF00999 Sodium/hydrogen exchanger family BF28_919 PF07690 Major Facilitator Superfamily BF28_920 PF13603 Leucyl-tRNA synthetase, Domain 2 BF28_920 PF00133 tRNA synthetases class I (I, L, M and V) BF28_920 PF08264 Anticodon-binding domain of tRNA BF28_920 PF09334 tRNA synthetases class I (M) BF28_925 PF03845 Spore germination protein BF28_926 PF03323 Bacillus/Clostridium GerA spore germination protein BF28_927 PF00561 alpha/beta hydrolase fold BF28_929 PF00581 Rhodanese-like domain BF28_933 PF04055 Radical SAM superfamily BF28_933 PF06463 Molybdenum Cofactor Synthesis C BF28_934 PF00899 ThiF family BF28_935 PF01967 MoaC family BF28_936 PF00994 Probable molybdopterin binding domain BF28_936 PF03454 MoeA C-terminal region (domain IV) BF28_936 PF03453 MoeA N-terminal region (domain I and II) BF28_937 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BF28_938 PF02391 MoaE protein BF28_941 PF06800 Sugar transport protein BF28_943 PF02559 CarD-like/TRCF domain BF28_945 PF10957 Sporulation protein Cse60 BF28_947 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF28_948 PF01022 Bacterial regulatory protein, arsR family BF28_949 PF07690 Major Facilitator Superfamily BF28_951 PF01943 Polysaccharide biosynthesis protein BF28_951 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_952 PF00849 RNA pseudouridylate synthase BF28_952 PF01479 S4 domain BF28_953 PF08220 DeoR-like helix-turn-helix domain BF28_954 PF01546 Peptidase family M20/M25/M40 BF28_955 PF02834 LigT like Phosphoesterase BF28_956 PF17999 Pullulanase N1-terminal domain BF28_956 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF28_956 PF00128 Alpha amylase, catalytic domain BF28_957 PF01636 Phosphotransferase enzyme family BF28_958 PF14165 YtzH-like protein BF28_959 PF02390 Putative methyltransferase BF28_960 PF00753 Metallo-beta-lactamase superfamily BF28_962 PF05343 M42 glutamyl aminopeptidase BF28_963 PF01931 Protein of unknown function DUF84 BF28_964 PF00085 Thioredoxin BF28_965 PF07285 Protein of unknown function (DUF1444) BF28_966 PF14794 Domain of unknown function (DUF4479) BF28_966 PF01588 Putative tRNA binding domain BF28_968 PF17854 FtsK alpha domain BF28_968 PF09397 Ftsk gamma domain BF28_968 PF01580 FtsK/SpoIIIE family BF28_970 PF02875 Mur ligase family, glutamate ligase domain BF28_970 PF08245 Mur ligase middle domain BF28_970 PF01225 Mur ligase family, catalytic domain BF28_972 PF03551 Transcriptional regulator PadR-like family BF28_973 PF13302 Acetyltransferase (GNAT) domain BF28_977 PF02073 Thermophilic metalloprotease (M29) BF28_979 PF11009 Protein of unknown function (DUF2847) BF28_980 PF07537 CamS sex pheromone cAM373 precursor BF28_982 PF00356 Bacterial regulatory proteins, lacI family BF28_987 PF01741 Large-conductance mechanosensitive channel, MscL BF28_988 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_989 PF12796 Ankyrin repeats (3 copies) BF28_990 PF00672 HAMP domain BF28_990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_990 PF00512 His Kinase A (phospho-acceptor) domain BF28_990 PF13426 PAS domain BF28_991 PF00486 Transcriptional regulatory protein, C terminal BF28_991 PF00072 Response regulator receiver domain BF28_993 PF00561 alpha/beta hydrolase fold BF28_994 PF00850 Histone deacetylase domain BF28_995 PF00571 CBS domain BF28_996 PF00583 Acetyltransferase (GNAT) family BF28_997 PF00501 AMP-binding enzyme BF28_997 PF13193 AMP-binding enzyme C-terminal domain BF28_999 PF08281 Sigma-70, region 4 BF28_999 PF04542 Sigma-70 region 2