BF28_1 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF28_1001 PF00579 tRNA synthetases class I (W and Y) BF28_1001 PF01479 S4 domain BF28_1002 PF14154 BF28_1002 BF28_1005 PF09346 SMI1 / KNR4 family (SUKH-1) BF28_1006 PF06013 Proteins of 100 residues with WXG BF28_1006 PF14449 BF28_1006 BF28_1010 PF00163 Ribosomal protein S4/S9 N-terminal domain BF28_1010 PF01479 S4 domain BF28_1011 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_1012 PF13185 GAF domain BF28_1013 PF00440 Bacterial regulatory proteins, tetR family BF28_1014 PF00892 EamA-like transporter family BF28_1015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_1015 PF03466 LysR substrate binding domain BF28_1016 PF06160 BF28_1016 BF28_1017 PF00266 Aminotransferase class-V BF28_1018 PF02568 Thiamine biosynthesis protein (ThiI) BF28_1018 PF02926 THUMP domain BF28_1019 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_1020 PF00501 AMP-binding enzyme BF28_1020 PF13193 AMP-binding enzyme C-terminal domain BF28_1021 PF06983 3-demethylubiquinone-9 3-methyltransferase BF28_1022 PF07969 Amidohydrolase family BF28_1023 PF01513 ATP-NAD kinase BF28_1024 PF11167 BF28_1024 BF28_1025 PF09579 BF28_1025 BF28_1026 PF08534 Redoxin BF28_1027 PF02384 N-6 DNA Methylase BF28_1028 PF00871 Acetokinase family BF28_1029 PF00293 NUDIX domain BF28_1030 PF12787 BF28_1030 BF28_1031 PF02588 BF28_1031 BF28_1035 PF00764 Arginosuccinate synthase BF28_1036 PF00206 Lyase BF28_1036 PF14698 Argininosuccinate lyase C-terminal BF28_1037 PF11337 BF28_1037 BF28_1040 PF00582 Universal stress protein family BF28_1041 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_1042 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF28_1042 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF28_1044 PF12844 Helix-turn-helix domain BF28_1046 PF07883 Cupin domain BF28_1047 PF12746 GNAT acetyltransferase BF28_1049 PF00583 Acetyltransferase (GNAT) family BF28_1051 PF10978 BF28_1051 BF28_1053 PF11518 Protein of unknown function (DUF3221) BF28_1054 PF00557 Metallopeptidase family M24 BF28_1054 PF01321 Creatinase/Prolidase N-terminal domain BF28_1055 PF13483 Beta-lactamase superfamily domain BF28_1057 PF00392 Bacterial regulatory proteins, gntR family BF28_1057 PF00571 CBS domain BF28_1057 PF03061 Thioesterase superfamily BF28_1057 PF07085 DRTGG domain BF28_1059 PF01636 Phosphotransferase enzyme family BF28_1060 PF13133 BF28_1060 BF28_1061 PF14007 BF28_1061 BF28_1062 PF01368 DHH family BF28_1062 PF02272 DHHA1 domain BF28_1064 PF14034 BF28_1064 BF28_1065 PF01336 OB-fold nucleic acid binding domain BF28_1065 PF02811 PHP domain BF28_1065 PF07733 Bacterial DNA polymerase III alpha subunit BF28_1065 PF14579 Helix-hairpin-helix motif BF28_1066 PF00390 Malic enzyme, N-terminal domain BF28_1066 PF03949 Malic enzyme, NAD binding domain BF28_1067 PF00392 Bacterial regulatory proteins, gntR family BF28_1068 PF01039 Carboxyl transferase domain BF28_1069 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF28_107 PF00152 tRNA synthetases class II (D, K and N) BF28_107 PF01336 OB-fold nucleic acid binding domain BF28_1070 PF00365 Phosphofructokinase BF28_1071 PF00224 Pyruvate kinase, barrel domain BF28_1071 PF00391 PEP-utilising enzyme, mobile domain BF28_1071 PF02887 Pyruvate kinase, alpha/beta domain BF28_1072 PF04186 BF28_1072 BF28_1073 PF01594 BF28_1073 BF28_1074 PF04284 BF28_1074 BF28_1075 PF00285 Citrate synthase BF28_1076 PF00180 Isocitrate/isopropylmalate dehydrogenase BF28_1077 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_1077 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_1078 PF01575 MaoC like domain BF28_108 PF01207 Dihydrouridine synthase (Dus) BF28_1081 PF00072 Response regulator receiver domain BF28_1081 PF00486 Transcriptional regulatory protein, C terminal BF28_1082 PF00512 His Kinase A (phospho-acceptor) domain BF28_1082 PF00989 PAS fold BF28_1082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1082 PF16736 BF28_1082 BF28_1083 PF00476 DNA polymerase family A BF28_1083 PF01367 5'-3' exonuclease, C-terminal SAM fold BF28_1083 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF28_1084 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BF28_1084 PF06827 Zinc finger found in FPG and IleRS BF28_1084 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BF28_1085 PF02659 BF28_1085 BF28_1086 PF01121 Dephospho-CoA kinase BF28_1087 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_1087 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF28_1089 PF02675 S-adenosylmethionine decarboxylase BF28_109 PF01381 Helix-turn-helix BF28_1090 PF03477 ATP cone domain BF28_1091 PF07261 Replication initiation and membrane attachment BF28_1092 PF01695 IstB-like ATP binding protein BF28_1092 PF07319 Primosomal protein DnaI N-terminus BF28_1093 PF08812 BF28_1093 BF28_1094 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_1094 PF02824 TGS domain BF28_1094 PF03129 Anticodon binding domain BF28_1094 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_1095 PF00707 Translation initiation factor IF-3, C-terminal domain BF28_1095 PF05198 Translation initiation factor IF-3, N-terminal domain BF28_1096 PF01632 Ribosomal protein L35 BF28_1097 PF00453 Ribosomal protein L20 BF28_1098 PF08761 dUTPase BF28_1099 PF05343 M42 glutamyl aminopeptidase BF28_110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF28_1100 PF00440 Bacterial regulatory proteins, tetR family BF28_1100 PF14278 BF28_1100 BF28_1101 PF13437 HlyD family secretion protein BF28_1102 PF07690 Major Facilitator Superfamily BF28_1103 PF02517 CAAX protease self-immunity BF28_1104 PF02517 CAAX protease self-immunity BF28_1105 PF01966 HD domain BF28_1106 PF14098 BF28_1106 BF28_1107 PF00588 SpoU rRNA Methylase family BF28_1107 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF28_1108 PF01409 tRNA synthetases class II core domain (F) BF28_1108 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF28_1109 PF01588 Putative tRNA binding domain BF28_1109 PF03147 Ferredoxin-fold anticodon binding domain BF28_1109 PF03483 B3/4 domain BF28_1109 PF03484 tRNA synthetase B5 domain BF28_111 PF02152 Dihydroneopterin aldolase BF28_1110 PF00152 tRNA synthetases class II (D, K and N) BF28_1110 PF01336 OB-fold nucleic acid binding domain BF28_1111 PF14115 BF28_1111 BF28_1114 PF01351 Ribonuclease HII BF28_1114 PF11858 Domain of unknown function (DUF3378) BF28_1115 PF05164 Cell division protein ZapA BF28_1116 PF02674 BF28_1116 BF28_1117 PF02811 PHP domain BF28_1117 PF14520 Helix-hairpin-helix domain BF28_1117 PF14716 Helix-hairpin-helix domain BF28_1117 PF14791 DNA polymerase beta thumb BF28_1118 PF00488 MutS domain V BF28_1118 PF01713 Smr domain BF28_112 PF00809 Pterin binding enzyme BF28_1120 PF00849 RNA pseudouridylate synthase BF28_1120 PF01479 S4 domain BF28_1121 PF05525 BF28_1121 BF28_1122 PF05031 Iron Transport-associated domain BF28_1123 PF05031 Iron Transport-associated domain BF28_1124 PF01497 Periplasmic binding protein BF28_1125 PF01032 FecCD transport family BF28_1126 PF00005 ABC transporter BF28_1127 PF04203 Sortase family BF28_1128 PF03992 Antibiotic biosynthesis monooxygenase BF28_1129 PF00999 Sodium/hydrogen exchanger family BF28_1129 PF02254 TrkA-N domain BF28_113 PF01063 Aminotransferase class IV BF28_1130 PF10672 S-adenosylmethionine-dependent methyltransferase BF28_1131 PF09962 BF28_1131 BF28_1133 PF00072 Response regulator receiver domain BF28_1133 PF00486 Transcriptional regulatory protein, C terminal BF28_1134 PF00512 His Kinase A (phospho-acceptor) domain BF28_1134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1135 PF00005 ABC transporter BF28_1137 PF12730 BF28_1137 BF28_1138 PF13349 BF28_1138 BF28_1139 PF12730 BF28_1139 BF28_114 PF00117 Glutamine amidotransferase class-I BF28_1140 PF05163 DinB family BF28_1141 PF01391 Collagen triple helix repeat (20 copies) BF28_1142 PF00501 AMP-binding enzyme BF28_1142 PF13193 AMP-binding enzyme C-terminal domain BF28_1143 PF00440 Bacterial regulatory proteins, tetR family BF28_1143 PF08359 YsiA-like protein, C-terminal region BF28_1144 PF00378 Enoyl-CoA hydratase/isomerase family BF28_1145 PF01012 Electron transfer flavoprotein domain BF28_1146 PF00766 Electron transfer flavoprotein FAD-binding domain BF28_1146 PF01012 Electron transfer flavoprotein domain BF28_1147 PF00085 Thioredoxin BF28_1148 PF01541 GIY-YIG catalytic domain BF28_1148 PF02151 UvrB/uvrC motif BF28_1148 PF08459 UvrC Helix-hairpin-helix N-terminal BF28_1149 PF10702 Protein of unknown function (DUF2507) BF28_115 PF00425 chorismate binding enzyme BF28_115 PF04715 Anthranilate synthase component I, N terminal region BF28_1150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BF28_1151 PF00890 FAD binding domain BF28_1151 PF02910 Fumarate reductase flavoprotein C-term BF28_1152 PF13085 2Fe-2S iron-sulfur cluster binding domain BF28_1152 PF13183 4Fe-4S dicluster domain BF28_1153 PF03061 Thioesterase superfamily BF28_1154 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_1155 PF01618 BF28_1155 BF28_1156 PF00691 OmpA family BF28_1156 PF13677 BF28_1156 BF28_1157 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BF28_1158 PF00005 ABC transporter BF28_1158 PF13732 BF28_1158 BF28_1159 PF12698 ABC-2 family transporter protein BF28_116 PF00291 Pyridoxal-phosphate dependent enzyme BF28_1160 PF02082 Transcriptional regulator BF28_1161 PF00230 Major intrinsic protein BF28_1162 PF13536 Multidrug resistance efflux transporter BF28_1163 PF01381 Helix-turn-helix BF28_1163 PF07883 Cupin domain BF28_1164 PF04024 BF28_1164 BF28_1166 PF00072 Response regulator receiver domain BF28_1166 PF12833 Helix-turn-helix domain BF28_1167 PF06580 BF28_1167 BF28_1168 PF00005 ABC transporter BF28_1168 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_1169 PF00005 ABC transporter BF28_1169 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_117 PF01430 Hsp33 protein BF28_1170 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1171 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1171 PF12911 BF28_1171 BF28_1172 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_1173 PF07969 Amidohydrolase family BF28_1174 PF07969 Amidohydrolase family BF28_1175 PF00892 EamA-like transporter family BF28_1176 PF00860 Permease family BF28_1177 PF00196 Bacterial regulatory proteins, luxR family BF28_1179 PF01177 Asp/Glu/Hydantoin racemase BF28_118 PF03309 Type III pantothenate kinase BF28_1180 PF10646 BF28_1180 BF28_1181 PF01138 3' exoribonuclease family, domain 1 BF28_1181 PF03725 3' exoribonuclease family, domain 2 BF28_1182 PF01725 Ham1 family BF28_1183 PF12850 Calcineurin-like phosphoesterase superfamily domain BF28_1186 PF00589 Phage integrase family BF28_1189 PF00239 Resolvase, N terminal domain BF28_1189 PF02796 Helix-turn-helix domain of resolvase BF28_119 PF00004 ATPase family associated with various cellular activities (AAA) BF28_119 PF01434 Peptidase family M41 BF28_119 PF06480 FtsH Extracellular BF28_1193 PF13392 HNH endonuclease BF28_1198 PF08000 Bacterial PH domain BF28_1198 PF11724 YvbH-like oligomerisation region BF28_120 PF00156 Phosphoribosyl transferase domain BF28_1203 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF28_1203 PF05697 Bacterial trigger factor protein (TF) BF28_1203 PF05698 Bacterial trigger factor protein (TF) C-terminus BF28_1204 PF06689 ClpX C4-type zinc finger BF28_1204 PF07724 AAA domain (Cdc48 subfamily) BF28_1204 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_1205 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1205 PF05362 Lon protease (S16) C-terminal proteolytic domain BF28_1206 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1206 PF02190 ATP-dependent protease La (LON) domain BF28_1206 PF05362 Lon protease (S16) C-terminal proteolytic domain BF28_1207 PF01926 50S ribosome-binding GTPase BF28_1208 PF02566 OsmC-like protein BF28_1209 PF01047 MarR family BF28_121 PF01171 PP-loop family BF28_121 PF09179 TilS substrate binding domain BF28_121 PF11734 TilS substrate C-terminal domain BF28_1210 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BF28_1210 PF01488 Shikimate / quinate 5-dehydrogenase BF28_1210 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BF28_1211 PF01578 BF28_1211 BF28_1212 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BF28_1212 PF03900 Porphobilinogen deaminase, C-terminal domain BF28_1213 PF02602 Uroporphyrinogen-III synthase HemD BF28_1214 PF00490 Delta-aminolevulinic acid dehydratase BF28_1215 PF00202 Aminotransferase class-III BF28_1216 PF01476 LysM domain BF28_1217 PF01636 Phosphotransferase enzyme family BF28_1218 PF00133 tRNA synthetases class I (I, L, M and V) BF28_1218 PF08264 Anticodon-binding domain of tRNA BF28_1218 PF10458 Valyl tRNA synthetase tRNA binding arm BF28_1219 PF02875 Mur ligase family, glutamate ligase domain BF28_1219 PF08245 Mur ligase middle domain BF28_122 PF07228 Stage II sporulation protein E (SpoIIE) BF28_1221 PF02545 Maf-like protein BF28_1222 PF04002 RadC-like JAB domain BF28_1223 PF06723 MreB/Mbl protein BF28_1224 PF04085 rod shape-determining protein MreC BF28_1225 PF04093 BF28_1225 BF28_1226 PF03775 Septum formation inhibitor MinC, C-terminal domain BF28_1227 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF28_1228 PF01551 Peptidase family M23 BF28_1229 PF02163 Peptidase family M50 BF28_1230 PF10150 Ribonuclease E/G family BF28_1231 PF00829 Ribosomal prokaryotic L21 protein BF28_1232 PF04327 Protein of unknown function (DUF464) BF28_1233 PF01016 Ribosomal L27 protein BF28_1234 PF14682 Sporulation initiation phospho-transferase B, C-terminal BF28_1234 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF28_1235 PF01018 GTP1/OBG BF28_1235 PF01926 50S ribosome-binding GTPase BF28_1235 PF09269 Domain of unknown function (DUF1967) BF28_1236 PF00072 Response regulator receiver domain BF28_1236 PF00486 Transcriptional regulatory protein, C terminal BF28_1237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1238 PF00005 ABC transporter BF28_1239 PF02687 BF28_1239 BF28_1240 PF02687 BF28_1240 BF28_1241 PF00800 Prephenate dehydratase BF28_1242 PF03473 MOSC domain BF28_1242 PF03475 3-alpha domain BF28_1243 PF02829 3H domain BF28_1243 PF08279 HTH domain BF28_1244 PF00266 Aminotransferase class-V BF28_1245 PF00890 FAD binding domain BF28_1245 PF02910 Fumarate reductase flavoprotein C-term BF28_1246 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF28_1246 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF28_1247 PF02445 Quinolinate synthetase A protein BF28_1248 PF01476 LysM domain BF28_1249 PF09580 BF28_1249 BF28_125 PF00575 S1 RNA binding domain BF28_1251 PF01022 Bacterial regulatory protein, arsR family BF28_1252 PF00892 EamA-like transporter family BF28_1253 PF08955 BofC C-terminal domain BF28_1253 PF08977 Bypass of Forespore C, N terminal BF28_1254 PF01497 Periplasmic binding protein BF28_1255 PF01330 RuvA N terminal domain BF28_1255 PF07499 RuvA, C-terminal domain BF28_1255 PF14520 Helix-hairpin-helix domain BF28_1256 PF05491 Holliday junction DNA helicase ruvB C-terminus BF28_1256 PF05496 Holliday junction DNA helicase ruvB N-terminus BF28_1257 PF11146 BF28_1257 BF28_1258 PF02547 Queuosine biosynthesis protein BF28_1259 PF01702 Queuine tRNA-ribosyltransferase BF28_126 PF04977 Septum formation initiator BF28_1260 PF02699 Preprotein translocase subunit BF28_1261 PF12670 BF28_1261 BF28_1262 PF04239 Protein of unknown function (DUF421) BF28_1263 PF01943 BF28_1263 BF28_1263 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_1264 PF13797 BF28_1264 BF28_1265 PF02355 Protein export membrane protein BF28_1265 PF07549 SecD/SecF GG Motif BF28_1266 PF01545 Cation efflux family BF28_1266 PF16916 BF28_1266 BF28_1267 PF01368 DHH family BF28_1267 PF02272 DHHA1 domain BF28_1267 PF10141 BF28_1267 BF28_1268 PF00156 Phosphoribosyl transferase domain BF28_1269 PF02824 TGS domain BF28_1269 PF04607 Region found in RelA / SpoT proteins BF28_1269 PF13291 ACT domain BF28_1269 PF13328 HD domain BF28_127 PF09578 BF28_127 BF28_1270 PF02580 D-Tyr-tRNA(Tyr) deacylase BF28_1271 PF12697 Alpha/beta hydrolase family BF28_1274 PF03129 Anticodon binding domain BF28_1274 PF13393 Histidyl-tRNA synthetase BF28_1275 PF00152 tRNA synthetases class II (D, K and N) BF28_1275 PF01336 OB-fold nucleic acid binding domain BF28_1275 PF02938 GAD domain BF28_1276 PF00899 ThiF family BF28_1277 PF13921 Myb-like DNA-binding domain BF28_1278 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1278 PF12002 MgsA AAA+ ATPase C terminal BF28_1278 PF16193 BF28_1278 BF28_1279 PF02082 Transcriptional regulator BF28_128 PF07873 YabP family BF28_1280 PF00266 Aminotransferase class-V BF28_1281 PF03054 tRNA methyl transferase BF28_1282 PF00515 Tetratricopeptide repeat BF28_1282 PF07719 Tetratricopeptide repeat BF28_1282 PF13176 Tetratricopeptide repeat BF28_1282 PF13181 Tetratricopeptide repeat BF28_1282 PF13414 TPR repeat BF28_1283 PF13538 UvrD-like helicase C-terminal domain BF28_1283 PF13604 AAA domain BF28_1283 PF14490 Helix-hairpin-helix containing domain BF28_1285 PF13056 BF28_1285 BF28_1287 PF01594 BF28_1287 BF28_1288 PF14470 Bacterial PH domain BF28_1289 PF01411 tRNA synthetases class II (A) BF28_1289 PF02272 DHHA1 domain BF28_1289 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_129 PF01479 S4 domain BF28_1291 PF03652 Uncharacterised protein family (UPF0081) BF28_1292 PF06949 BF28_1292 BF28_1293 PF02618 YceG-like family BF28_1294 PF01596 O-methyltransferase BF28_1295 PF01136 BF28_1295 BF28_1296 PF01136 BF28_1296 BF28_1296 PF16325 BF28_1296 BF28_1297 PF00485 Phosphoribulokinase / Uridine kinase family BF28_1298 PF01272 Transcription elongation factor, GreA/GreB, C-term BF28_1298 PF03449 Transcription elongation factor, N-terminal BF28_1299 PF00905 Penicillin binding protein transpeptidase domain BF28_130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_130 PF03819 MazG nucleotide pyrophosphohydrolase domain BF28_1300 PF07423 BF28_1300 BF28_1301 PF10750 BF28_1301 BF28_1302 PF08241 Methyltransferase domain BF28_1303 PF01048 Phosphorylase superfamily BF28_1304 PF00291 Pyridoxal-phosphate dependent enzyme BF28_1305 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_1306 PF00171 Aldehyde dehydrogenase family BF28_1306 PF00465 Iron-containing alcohol dehydrogenase BF28_1307 PF14143 BF28_1307 BF28_1308 PF01497 Periplasmic binding protein BF28_1309 PF01032 FecCD transport family BF28_131 PF01943 BF28_131 BF28_131 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_1310 PF00005 ABC transporter BF28_1312 PF13302 Acetyltransferase (GNAT) domain BF28_1313 PF13508 Acetyltransferase (GNAT) domain BF28_1314 PF01575 MaoC like domain BF28_1315 PF07883 Cupin domain BF28_1315 PF12844 Helix-turn-helix domain BF28_1316 PF07681 BF28_1316 BF28_1317 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_1318 PF01329 Pterin 4 alpha carbinolamine dehydratase BF28_1319 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BF28_132 PF04014 Antidote-toxin recognition MazE BF28_132 PF15714 BF28_132 BF28_1320 PF00082 Subtilase family BF28_1320 PF02225 PA domain BF28_1320 PF05922 Peptidase inhibitor I9 BF28_1320 PF13860 FlgD Ig-like domain BF28_1321 PF08662 Eukaryotic translation initiation factor eIF2A BF28_1322 PF13215 BF28_1322 BF28_1324 PF00300 Histidine phosphatase superfamily (branch 1) BF28_1326 PF07681 BF28_1326 BF28_1327 PF00561 alpha/beta hydrolase fold BF28_1328 PF13673 Acetyltransferase (GNAT) domain BF28_1329 PF00245 Alkaline phosphatase BF28_133 PF00270 DEAD/DEAH box helicase BF28_133 PF00271 Helicase conserved C-terminal domain BF28_133 PF02559 CarD-like/TRCF domain BF28_133 PF03461 TRCF domain BF28_1331 PF04607 Region found in RelA / SpoT proteins BF28_1332 PF00881 Nitroreductase family BF28_1333 PF00471 Ribosomal protein L33 BF28_1334 PF16244 BF28_1334 BF28_1335 PF13276 BF28_1335 BF28_1336 PF00665 Integrase core domain BF28_1338 PF04542 Sigma-70 region 2 BF28_1338 PF04545 Sigma-70, region 4 BF28_1339 PF02666 BF28_1339 BF28_134 PF10955 BF28_134 BF28_1340 PF08970 Sporulation inhibitor A BF28_1341 PF09419 BF28_1341 BF28_1342 PF01926 50S ribosome-binding GTPase BF28_1343 PF01488 Shikimate / quinate 5-dehydrogenase BF28_1343 PF08501 Shikimate dehydrogenase substrate binding domain BF28_1344 PF01985 CRS1 / YhbY (CRM) domain BF28_1345 PF01467 Cytidylyltransferase BF28_1346 PF01966 HD domain BF28_1347 PF02410 Oligomerisation domain BF28_1348 PF13649 Methyltransferase domain BF28_1349 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_1349 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_135 PF01195 Peptidyl-tRNA hydrolase BF28_1350 PF10531 SLBB domain BF28_1350 PF12836 Helix-hairpin-helix motif BF28_1351 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_1352 PF00753 Metallo-beta-lactamase superfamily BF28_1352 PF03772 BF28_1352 BF28_1352 PF13567 BF28_1352 BF28_1353 PF14141 BF28_1353 BF28_1354 PF06144 DNA polymerase III, delta subunit BF28_1355 PF01649 Ribosomal protein S20 BF28_1356 PF03418 Germination protease BF28_1357 PF12438 BF28_1357 BF28_1358 PF00009 Elongation factor Tu GTP binding domain BF28_1358 PF00679 Elongation factor G C-terminus BF28_1358 PF03144 Elongation factor Tu domain 2 BF28_1358 PF06421 GTP-binding protein LepA C-terminus BF28_1359 PF01638 HxlR-like helix-turn-helix BF28_136 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF28_136 PF14572 Phosphoribosyl synthetase-associated domain BF28_1360 PF04055 Radical SAM superfamily BF28_1360 PF06969 HemN C-terminal domain BF28_1361 PF01628 HrcA protein C terminal domain BF28_1362 PF01025 GrpE BF28_1363 PF00012 Hsp70 protein BF28_1364 PF00226 DnaJ domain BF28_1364 PF00684 DnaJ central domain BF28_1364 PF01556 DnaJ C terminal domain BF28_1365 PF06325 Ribosomal protein L11 methyltransferase (PrmA) BF28_1366 PF04452 RNA methyltransferase BF28_1367 PF00919 Uncharacterized protein family UPF0004 BF28_1367 PF01938 TRAM domain BF28_1367 PF04055 Radical SAM superfamily BF28_1368 PF01165 Ribosomal protein S21 BF28_1369 PF09424 Yqey-like protein BF28_137 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_137 PF00483 Nucleotidyl transferase BF28_1370 PF07873 YabP family BF28_1371 PF06898 BF28_1371 BF28_1372 PF02562 PhoH-like protein BF28_1373 PF01966 HD domain BF28_1373 PF07697 BF28_1373 BF28_1373 PF07698 BF28_1373 BF28_1374 PF02130 Uncharacterized protein family UPF0054 BF28_1375 PF01219 Prokaryotic diacylglycerol kinase BF28_1376 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_1377 PF01926 50S ribosome-binding GTPase BF28_1377 PF07650 KH domain BF28_1378 PF14006 BF28_1378 BF28_1379 PF02565 Recombination protein O C terminal BF28_1379 PF11967 Recombination protein O N terminal BF28_138 PF04026 SpoVG BF28_1380 PF00571 CBS domain BF28_1380 PF08279 HTH domain BF28_1381 PF03618 BF28_1381 BF28_1382 PF01807 CHC2 zinc finger BF28_1382 PF08275 DNA primase catalytic core, N-terminal domain BF28_1382 PF10410 DnaB-helicase binding domain of primase BF28_1382 PF13155 Toprim-like BF28_1383 PF00140 Sigma-70 factor, region 1 BF28_1383 PF03979 Sigma-70 factor, region 1 BF28_1383 PF04539 Sigma-70 region 3 BF28_1383 PF04542 Sigma-70 region 2 BF28_1383 PF04545 Sigma-70, region 4 BF28_1384 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF28_1385 PF04816 Family of unknown function (DUF633) BF28_1386 PF01784 NIF3 (NGG1p interacting factor 3) BF28_1387 PF02401 LytB protein BF28_1388 PF14181 BF28_1388 BF28_1389 PF00270 DEAD/DEAH box helicase BF28_1389 PF00271 Helicase conserved C-terminal domain BF28_139 PF01042 Endoribonuclease L-PSP BF28_1390 PF01261 Xylose isomerase-like TIM barrel BF28_1391 PF11116 BF28_1391 BF28_1392 PF02588 BF28_1392 BF28_1392 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_1393 PF00005 ABC transporter BF28_1394 PF00950 BF28_1394 BF28_1395 PF01475 Ferric uptake regulator family BF28_1396 PF04551 GcpE protein BF28_1398 PF06691 BF28_1398 BF28_140 PF00156 Phosphoribosyl transferase domain BF28_140 PF09182 Bacterial purine repressor, N-terminal BF28_1400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF28_1400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF28_1401 PF07690 Major Facilitator Superfamily BF28_1402 PF00905 Penicillin binding protein transpeptidase domain BF28_1402 PF03717 Penicillin-binding Protein dimerisation domain BF28_1403 PF12849 PBP superfamily domain BF28_1404 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1405 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1406 PF00005 ABC transporter BF28_1407 PF01895 PhoU domain BF28_1408 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_1408 PF00483 Nucleotidyl transferase BF28_1408 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF28_1409 PF00471 Ribosomal protein L33 BF28_141 PF00288 GHMP kinases N terminal domain BF28_141 PF08544 GHMP kinases C terminal BF28_1410 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF28_1411 PF06014 Bacterial protein of unknown function (DUF910) BF28_1412 PF00480 ROK family BF28_1413 PF10958 BF28_1413 BF28_1414 PF00753 Metallo-beta-lactamase superfamily BF28_1415 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase BF28_1416 PF12840 Helix-turn-helix domain BF28_1417 PF00857 Isochorismatase family BF28_1418 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_1419 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_142 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_1420 PF02219 Methylenetetrahydrofolate reductase BF28_1420 PF02574 Homocysteine S-methyltransferase BF28_1421 PF00809 Pterin binding enzyme BF28_1421 PF02310 B12 binding domain BF28_1421 PF02574 Homocysteine S-methyltransferase BF28_1421 PF02607 B12 binding domain BF28_1421 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF28_1422 PF03033 Glycosyltransferase family 28 N-terminal domain BF28_1422 PF04101 Glycosyltransferase family 28 C-terminal domain BF28_1423 PF13110 BF28_1423 BF28_1424 PF05014 Nucleoside 2-deoxyribosyltransferase BF28_1427 PF13051 BF28_1427 BF28_1428 PF00375 Sodium:dicarboxylate symporter family BF28_1429 PF11117 BF28_1429 BF28_143 PF06257 Protein of unknown function (DUF1021) BF28_1430 PF12840 Helix-turn-helix domain BF28_1431 PF00437 Type II/IV secretion system protein BF28_1432 PF00482 Type II secretion system (T2SS), protein F BF28_1433 PF07963 Prokaryotic N-terminal methylation motif BF28_1434 PF07963 Prokaryotic N-terminal methylation motif BF28_1436 PF07963 Prokaryotic N-terminal methylation motif BF28_1436 PF15980 BF28_1436 BF28_1437 PF14173 BF28_1437 BF28_1438 PF13640 2OG-Fe(II) oxygenase superfamily BF28_1439 PF01202 Shikimate kinase BF28_144 PF05582 BF28_144 BF28_1440 PF14038 BF28_1440 BF28_1444 PF11079 BF28_1444 BF28_1445 PF00176 SNF2 family N-terminal domain BF28_1445 PF00271 Helicase conserved C-terminal domain BF28_1446 PF01571 Aminomethyltransferase folate-binding domain BF28_1446 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF28_1447 PF02347 Glycine cleavage system P-protein BF28_1448 PF02347 Glycine cleavage system P-protein BF28_1449 PF13066 BF28_1449 BF28_145 PF00398 Ribosomal RNA adenine dimethylase BF28_1451 PF00392 Bacterial regulatory proteins, gntR family BF28_1452 PF00005 ABC transporter BF28_1453 PF13346 BF28_1453 BF28_1454 PF13346 BF28_1454 BF28_1455 PF13346 BF28_1455 BF28_1456 PF13346 BF28_1456 BF28_1458 PF13126 BF28_1458 BF28_1459 PF00893 Small Multidrug Resistance protein BF28_146 PF13331 BF28_146 BF28_146 PF13662 Toprim domain BF28_1460 PF00893 Small Multidrug Resistance protein BF28_1461 PF00440 Bacterial regulatory proteins, tetR family BF28_1462 PF00356 Bacterial regulatory proteins, lacI family BF28_1462 PF13377 Periplasmic binding protein-like domain BF28_1464 PF00581 Rhodanese-like domain BF28_1465 PF03099 Biotin/lipoate A/B protein ligase family BF28_1467 PF06570 BF28_1467 BF28_1468 PF03551 Transcriptional regulator PadR-like family BF28_147 PF01026 TatD related DNase BF28_1470 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF28_1470 PF02742 Iron dependent repressor, metal binding and dimerisation domain BF28_1472 PF13419 Haloacid dehalogenase-like hydrolase BF28_1473 PF07136 BF28_1473 BF28_1474 PF11085 BF28_1474 BF28_1475 PF01220 Dehydroquinase class II BF28_1476 PF00557 Metallopeptidase family M24 BF28_1476 PF01321 Creatinase/Prolidase N-terminal domain BF28_1477 PF01132 Elongation factor P (EF-P) OB domain BF28_1477 PF08207 Elongation factor P (EF-P) KOW-like domain BF28_1477 PF09285 Elongation factor P, C-terminal BF28_1479 PF13302 Acetyltransferase (GNAT) domain BF28_148 PF01588 Putative tRNA binding domain BF28_148 PF08264 Anticodon-binding domain of tRNA BF28_148 PF09334 tRNA synthetases class I (M) BF28_1480 PF10942 BF28_1480 BF28_1481 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1482 PF09548 BF28_1482 BF28_1483 PF06686 BF28_1483 BF28_1484 PF06686 BF28_1484 BF28_1485 PF09546 BF28_1485 BF28_1486 PF09581 BF28_1486 BF28_1488 PF12685 SpoIIIAH-like protein BF28_149 PF04014 Antidote-toxin recognition MazE BF28_1490 PF00364 Biotin-requiring enzyme BF28_1491 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BF28_1491 PF02785 Biotin carboxylase C-terminal domain BF28_1491 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_1492 PF03780 BF28_1492 BF28_1493 PF01029 NusB family BF28_1494 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF28_1494 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF28_1495 PF02601 BF28_1495 BF28_1495 PF13742 BF28_1495 BF28_1496 PF02609 Exonuclease VII small subunit BF28_1497 PF00348 Polyprenyl synthetase BF28_1498 PF02779 Transketolase, pyrimidine binding domain BF28_1498 PF02780 Transketolase, C-terminal domain BF28_1498 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF28_1499 PF01479 S4 domain BF28_1499 PF01728 FtsJ-like methyltransferase BF28_150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_1500 PF01316 Arginine repressor, DNA binding domain BF28_1500 PF02863 Arginine repressor, C-terminal domain BF28_1501 PF02463 RecF/RecN/SMC N terminal domain BF28_1502 PF05580 BF28_1502 BF28_1502 PF13180 PDZ domain BF28_1503 PF00072 Response regulator receiver domain BF28_1503 PF08769 Sporulation initiation factor Spo0A C terminal BF28_1504 PF06013 Proteins of 100 residues with WXG BF28_1506 PF13231 BF28_1506 BF28_1507 PF14174 BF28_1507 BF28_1508 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_1509 PF11118 BF28_1509 BF28_151 PF01541 GIY-YIG catalytic domain BF28_1510 PF00158 Sigma-54 interaction domain BF28_1510 PF00989 PAS fold BF28_1510 PF02954 Bacterial regulatory protein, Fis family BF28_1511 PF01515 Phosphate acetyl/butaryl transferase BF28_1512 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_1512 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF28_1513 PF00871 Acetokinase family BF28_1514 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_1514 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_1515 PF00676 Dehydrogenase E1 component BF28_1516 PF02779 Transketolase, pyrimidine binding domain BF28_1516 PF02780 Transketolase, C-terminal domain BF28_1517 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_1517 PF00364 Biotin-requiring enzyme BF28_1517 PF02817 e3 binding domain BF28_1518 PF01098 BF28_1518 BF28_1519 PF04239 Protein of unknown function (DUF421) BF28_152 PF05175 Methyltransferase small domain BF28_1520 PF00293 NUDIX domain BF28_1521 PF11208 BF28_1521 BF28_1522 PF06491 Disulphide isomerase BF28_1523 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_1524 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1525 PF00005 ABC transporter BF28_1526 PF06081 BF28_1526 BF28_1526 PF11728 DUF939 C-terminal domain BF28_1527 PF03734 L,D-transpeptidase catalytic domain BF28_1528 PF13033 BF28_1528 BF28_1529 PF13302 Acetyltransferase (GNAT) domain BF28_153 PF06156 BF28_153 BF28_1530 PF01546 Peptidase family M20/M25/M40 BF28_1530 PF07687 Peptidase dimerisation domain BF28_1531 PF00817 impB/mucB/samB family BF28_1531 PF11798 IMS family HHH motif BF28_1531 PF11799 impB/mucB/samB family C-terminal domain BF28_1532 PF13068 BF28_1532 BF28_1533 PF00753 Metallo-beta-lactamase superfamily BF28_1533 PF12706 Beta-lactamase superfamily domain BF28_1534 PF01842 ACT domain BF28_1534 PF03315 Serine dehydratase beta chain BF28_1535 PF03313 BF28_1535 BF28_1536 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_1536 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_1537 PF00753 Metallo-beta-lactamase superfamily BF28_1538 PF00106 short chain dehydrogenase BF28_1539 PF14164 BF28_1539 BF28_154 PF04468 BF28_154 BF28_1540 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF28_1540 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF28_1541 PF01960 ArgJ family BF28_1542 PF00696 Amino acid kinase family BF28_1543 PF00202 Aminotransferase class-III BF28_1544 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF28_1544 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF28_1545 PF09835 BF28_1545 BF28_1547 PF01047 MarR family BF28_1548 PF13472 GDSL-like Lipase/Acylhydrolase family BF28_1549 PF00149 Calcineurin-like phosphoesterase BF28_1549 PF00746 BF28_1549 BF28_1549 PF02872 5'-nucleotidase, C-terminal domain BF28_155 PF13177 DNA polymerase III, delta subunit BF28_1550 PF03553 BF28_1550 BF28_1552 PF00202 Aminotransferase class-III BF28_1553 PF13500 AAA domain BF28_1554 PF00155 Aminotransferase class I and II BF28_1555 PF12697 Alpha/beta hydrolase family BF28_1556 PF13847 Methyltransferase domain BF28_1557 PF04055 Radical SAM superfamily BF28_1557 PF06968 Biotin and Thiamin Synthesis associated domain BF28_1559 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF28_156 PF02223 Thymidylate kinase BF28_1560 PF00925 GTP cyclohydrolase II BF28_1560 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BF28_1561 PF00677 Lumazine binding domain BF28_1562 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_1562 PF01872 RibD C-terminal domain BF28_1563 PF09360 Iron-binding zinc finger CDGSH type BF28_1564 PF10827 BF28_1564 BF28_1565 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF28_1566 PF00583 Acetyltransferase (GNAT) family BF28_1567 PF00356 Bacterial regulatory proteins, lacI family BF28_1567 PF13377 Periplasmic binding protein-like domain BF28_1568 PF03553 BF28_1568 BF28_1568 PF13726 BF28_1568 BF28_1569 PF00561 alpha/beta hydrolase fold BF28_157 PF01276 Orn/Lys/Arg decarboxylase, major domain BF28_157 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF28_1570 PF12651 BF28_1570 BF28_1571 PF00149 Calcineurin-like phosphoesterase BF28_1571 PF02872 5'-nucleotidase, C-terminal domain BF28_1572 PF13025 BF28_1572 BF28_1573 PF04229 GrpB protein BF28_1574 PF00248 Aldo/keto reductase family BF28_1575 PF00248 Aldo/keto reductase family BF28_1576 PF13072 BF28_1576 BF28_1577 PF00293 NUDIX domain BF28_1578 PF13302 Acetyltransferase (GNAT) domain BF28_1579 PF01944 BF28_1579 BF28_158 PF10764 BF28_158 BF28_1580 PF01475 Ferric uptake regulator family BF28_1581 PF14004 BF28_1581 BF28_1582 PF00589 Phage integrase family BF28_1582 PF02899 Phage integrase, N-terminal SAM-like domain BF28_1583 PF13115 BF28_1583 BF28_1584 PF01676 Metalloenzyme superfamily BF28_1585 PF01048 Phosphorylase superfamily BF28_1586 PF00591 Glycosyl transferase family, a/b domain BF28_1586 PF02885 Glycosyl transferase family, helical bundle domain BF28_1586 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_1587 PF01544 CorA-like Mg2+ transporter protein BF28_1588 PF00860 Permease family BF28_1589 PF04402 Protein of unknown function (DUF541) BF28_1590 PF01047 MarR family BF28_1592 PF12679 BF28_1592 BF28_1593 PF12679 BF28_1593 BF28_1594 PF00005 ABC transporter BF28_1595 PF00392 Bacterial regulatory proteins, gntR family BF28_1596 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_1596 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_1597 PF01740 STAS domain BF28_1598 PF13581 Histidine kinase-like ATPase domain BF28_1599 PF04539 Sigma-70 region 3 BF28_1599 PF04542 Sigma-70 region 2 BF28_1599 PF04545 Sigma-70, region 4 BF28_1600 PF00209 Sodium:neurotransmitter symporter family BF28_1601 PF16951 BF28_1601 BF28_1602 PF12164 Stage V sporulation protein AA BF28_1603 PF13782 BF28_1603 BF28_1604 PF03862 BF28_1604 BF28_1605 PF07451 Stage V sporulation protein AD (SpoVAD) BF28_1606 PF03862 BF28_1606 BF28_1607 PF14097 BF28_1607 BF28_1608 PF03323 BF28_1608 BF28_1609 PF08282 haloacid dehalogenase-like hydrolase BF28_1610 PF06207 BF28_1610 BF28_1611 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF28_1612 PF00583 Acetyltransferase (GNAT) family BF28_1613 PF03745 Domain of unknown function (DUF309) BF28_1614 PF09680 BF28_1614 BF28_1615 PF02616 ScpA/B protein BF28_1616 PF04079 Putative transcriptional regulators (Ypuh-like) BF28_1617 PF00753 Metallo-beta-lactamase superfamily BF28_1618 PF01979 Amidohydrolase family BF28_1619 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF28_1620 PF00392 Bacterial regulatory proteins, gntR family BF28_1620 PF07702 UTRA domain BF28_1621 PF08282 haloacid dehalogenase-like hydrolase BF28_1622 PF00874 PRD domain BF28_1622 PF03123 CAT RNA binding domain BF28_1623 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF28_1623 PF00367 phosphotransferase system, EIIB BF28_1623 PF02378 Phosphotransferase system, EIIC BF28_1624 PF00381 PTS HPr component phosphorylation site BF28_1625 PF00391 PEP-utilising enzyme, mobile domain BF28_1625 PF02896 PEP-utilising enzyme, TIM barrel domain BF28_1625 PF05524 PEP-utilising enzyme, N-terminal BF28_1626 PF13054 BF28_1626 BF28_1628 PF00881 Nitroreductase family BF28_1629 PF00990 GGDEF domain BF28_163 PF07441 BF28_163 BF28_1630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_1630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF28_1631 PF13077 BF28_1631 BF28_1633 PF03079 ARD/ARD' family BF28_1634 PF00596 Class II Aldolase and Adducin N-terminal domain BF28_1635 PF12710 haloacid dehalogenase-like hydrolase BF28_1636 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BF28_1636 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BF28_1637 PF00155 Aminotransferase class I and II BF28_1638 PF00795 Carbon-nitrogen hydrolase BF28_1639 PF01636 Phosphotransferase enzyme family BF28_164 PF10704 BF28_164 BF28_1640 PF01008 Initiation factor 2 subunit family BF28_1641 PF12841 BF28_1641 BF28_1642 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_1643 PF03551 Transcriptional regulator PadR-like family BF28_1648 PF13065 BF28_1648 BF28_1649 PF00293 NUDIX domain BF28_165 PF02132 RecR protein BF28_165 PF13662 Toprim domain BF28_1650 PF00108 Thiolase, N-terminal domain BF28_1650 PF02803 Thiolase, C-terminal domain BF28_1651 PF13304 AAA domain BF28_1651 PF13476 AAA domain BF28_1652 PF13803 BF28_1652 BF28_1654 PF13162 BF28_1654 BF28_1655 PF06271 BF28_1655 BF28_1657 PF00106 short chain dehydrogenase BF28_1658 PF00005 ABC transporter BF28_1658 PF08402 TOBE domain BF28_1659 PF00128 Alpha amylase, catalytic domain BF28_1659 PF16657 BF28_1659 BF28_166 PF02575 YbaB/EbfC DNA-binding family BF28_1660 PF00128 Alpha amylase, catalytic domain BF28_1660 PF02903 Alpha amylase, N-terminal ig-like domain BF28_1660 PF16657 BF28_1660 BF28_1661 PF13416 Bacterial extracellular solute-binding protein BF28_1662 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1663 PF00528 Binding-protein-dependent transport system inner membrane component BF28_1664 PF00356 Bacterial regulatory proteins, lacI family BF28_1664 PF13377 Periplasmic binding protein-like domain BF28_1665 PF00155 Aminotransferase class I and II BF28_1667 PF00512 His Kinase A (phospho-acceptor) domain BF28_1667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1668 PF13152 BF28_1668 BF28_1669 PF14040 BF28_1669 BF28_167 PF12169 DNA polymerase III subunits gamma and tau domain III BF28_167 PF13177 DNA polymerase III, delta subunit BF28_1670 PF11033 Competence protein J (ComJ) BF28_1671 PF01717 Cobalamin-independent synthase, Catalytic domain BF28_1671 PF08267 Cobalamin-independent synthase, N-terminal domain BF28_1672 PF03551 Transcriptional regulator PadR-like family BF28_1673 PF07690 Major Facilitator Superfamily BF28_1675 PF04688 BF28_1675 BF28_1676 PF00990 GGDEF domain BF28_1677 PF10368 Putative cell-wall binding lipoprotein BF28_1678 PF14177 BF28_1678 BF28_1679 PF02541 Ppx/GppA phosphatase family BF28_168 PF14437 BF28_168 BF28_1680 PF02503 Polyphosphate kinase middle domain BF28_1680 PF13089 Polyphosphate kinase N-terminal domain BF28_1680 PF13090 Polyphosphate kinase C-terminal domain BF28_1682 PF00149 Calcineurin-like phosphoesterase BF28_1683 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_1684 PF00563 EAL domain BF28_1684 PF10388 EAL-domain associated signalling protein domain BF28_1685 PF13158 BF28_1685 BF28_1686 PF00462 Glutaredoxin BF28_1687 PF08796 Protein of unknown function (DUF1797) BF28_1689 PF04308 BF28_1689 BF28_169 PF00857 Isochorismatase family BF28_1690 PF14156 Antirepressor AbbA BF28_1691 PF00571 CBS domain BF28_1692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_1692 PF03466 LysR substrate binding domain BF28_1693 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_1693 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BF28_1693 PF14602 Hexapeptide repeat of succinyl-transferase BF28_1694 PF01546 Peptidase family M20/M25/M40 BF28_1694 PF07687 Peptidase dimerisation domain BF28_1696 PF02080 TrkA-C domain BF28_1696 PF02254 TrkA-N domain BF28_1697 PF00753 Metallo-beta-lactamase superfamily BF28_1697 PF07521 RNA-metabolising metallo-beta-lactamase BF28_1698 PF07288 Protein of unknown function (DUF1447) BF28_1699 PF08282 haloacid dehalogenase-like hydrolase BF28_170 PF01712 Deoxynucleoside kinase BF28_1700 PF01327 Polypeptide deformylase BF28_1701 PF09680 BF28_1701 BF28_1702 PF00676 Dehydrogenase E1 component BF28_1703 PF02779 Transketolase, pyrimidine binding domain BF28_1703 PF02780 Transketolase, C-terminal domain BF28_1704 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_1704 PF00364 Biotin-requiring enzyme BF28_1704 PF02817 e3 binding domain BF28_1705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_1705 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_1707 PF08968 Domain of unknown function (DUF1885) BF28_1708 PF11256 BF28_1708 BF28_1709 PF13790 BF28_1709 BF28_171 PF01712 Deoxynucleoside kinase BF28_1710 PF13790 BF28_1710 BF28_1711 PF13790 BF28_1711 BF28_1713 PF01276 Orn/Lys/Arg decarboxylase, major domain BF28_1713 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF28_1714 PF05256 Uncharacterised protein family (UPF0223) BF28_1715 PF06335 Protein of unknown function (DUF1054) BF28_1717 PF00459 Inositol monophosphatase family BF28_1718 PF17259 BF28_1718 BF28_1719 PF00009 Elongation factor Tu GTP binding domain BF28_1719 PF00679 Elongation factor G C-terminus BF28_1719 PF03144 Elongation factor Tu domain 2 BF28_1719 PF14492 Elongation Factor G, domain II BF28_172 PF04545 Sigma-70, region 4 BF28_172 PF12677 BF28_172 BF28_1720 PF14036 BF28_1720 BF28_1722 PF09963 BF28_1722 BF28_1723 PF01243 Pyridoxamine 5'-phosphate oxidase BF28_1724 PF02562 PhoH-like protein BF28_1724 PF13638 PIN domain BF28_1726 PF07408 Protein of unknown function (DUF1507) BF28_1727 PF01098 BF28_1727 BF28_1728 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BF28_1728 PF00364 Biotin-requiring enzyme BF28_1728 PF00682 HMGL-like BF28_1728 PF02436 Conserved carboxylase domain BF28_1728 PF02785 Biotin carboxylase C-terminal domain BF28_1728 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_1729 PF02628 BF28_1729 BF28_1730 PF01040 UbiA prenyltransferase family BF28_1731 PF00034 Cytochrome c BF28_1731 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BF28_1731 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF28_1732 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF28_1733 PF00510 Cytochrome c oxidase subunit III BF28_1734 PF03626 BF28_1734 BF28_1735 PF09678 BF28_1735 BF28_1736 PF00795 Carbon-nitrogen hydrolase BF28_1737 PF08868 YugN-like family BF28_1738 PF00188 Cysteine-rich secretory protein family BF28_1738 PF14504 CAP-associated N-terminal BF28_1739 PF14071 BF28_1739 BF28_174 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_174 PF02403 Seryl-tRNA synthetase N-terminal domain BF28_1740 PF14003 BF28_1740 BF28_1741 PF00300 Histidine phosphatase superfamily (branch 1) BF28_1742 PF06133 Protein of unknown function (DUF964) BF28_1743 PF09902 BF28_1743 BF28_1745 PF03602 Conserved hypothetical protein 95 BF28_1747 PF01467 Cytidylyltransferase BF28_1748 PF01734 Patatin-like phospholipase BF28_1749 PF05362 Lon protease (S16) C-terminal proteolytic domain BF28_1749 PF13180 PDZ domain BF28_175 PF01174 SNO glutamine amidotransferase family BF28_1750 PF05636 HIGH Nucleotidyl Transferase BF28_1751 PF02620 BF28_1751 BF28_1752 PF01783 Ribosomal L32p protein family BF28_1753 PF13921 Myb-like DNA-binding domain BF28_1754 PF00583 Acetyltransferase (GNAT) family BF28_1755 PF02558 Ketopantoate reductase PanE/ApbA BF28_1755 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF28_1756 PF10079 BF28_1756 BF28_1757 PF01795 MraW methylase family BF28_1758 PF04977 Septum formation initiator BF28_1759 PF00905 Penicillin binding protein transpeptidase domain BF28_1759 PF03717 Penicillin-binding Protein dimerisation domain BF28_1759 PF03793 PASTA domain BF28_176 PF01680 SOR/SNZ family BF28_1760 PF00905 Penicillin binding protein transpeptidase domain BF28_1760 PF03717 Penicillin-binding Protein dimerisation domain BF28_1760 PF03793 PASTA domain BF28_1761 PF01225 Mur ligase family, catalytic domain BF28_1761 PF02875 Mur ligase family, glutamate ligase domain BF28_1761 PF08245 Mur ligase middle domain BF28_1762 PF00953 Glycosyl transferase family 4 BF28_1762 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BF28_1763 PF02875 Mur ligase family, glutamate ligase domain BF28_1763 PF08245 Mur ligase middle domain BF28_1764 PF01098 BF28_1764 BF28_1765 PF03033 Glycosyltransferase family 28 N-terminal domain BF28_1765 PF04101 Glycosyltransferase family 28 C-terminal domain BF28_1766 PF01565 FAD binding domain BF28_1766 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF28_1767 PF03799 Cell division protein FtsQ BF28_1767 PF08478 POTRA domain, FtsQ-type BF28_1768 PF02491 SHS2 domain inserted in FTSA BF28_1768 PF11983 BF28_1768 BF28_1768 PF14450 Cell division protein FtsA BF28_1769 PF00091 Tubulin/FtsZ family, GTPase domain BF28_1769 PF12327 FtsZ family, C-terminal domain BF28_177 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_177 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_1770 PF03419 BF28_1770 BF28_1771 PF04542 Sigma-70 region 2 BF28_1771 PF04545 Sigma-70, region 4 BF28_1772 PF04542 Sigma-70 region 2 BF28_1772 PF04545 Sigma-70, region 4 BF28_1773 PF05239 PRC-barrel domain BF28_1774 PF02578 Multi-copper polyphenol oxidoreductase laccase BF28_1775 PF01168 Alanine racemase, N-terminal domain BF28_1776 PF04472 Protein of unknown function (DUF552) BF28_1777 PF02325 BF28_1777 BF28_1778 PF01479 S4 domain BF28_1779 PF05103 DivIVA protein BF28_178 PF00478 IMP dehydrogenase / GMP reductase domain BF28_178 PF00571 CBS domain BF28_1780 PF00133 tRNA synthetases class I (I, L, M and V) BF28_1780 PF06827 Zinc finger found in FPG and IleRS BF28_1780 PF08264 Anticodon-binding domain of tRNA BF28_1782 PF01252 BF28_1782 BF28_1783 PF00849 RNA pseudouridylate synthase BF28_1783 PF01479 S4 domain BF28_1784 PF00156 Phosphoribosyl transferase domain BF28_1785 PF00860 Permease family BF28_1786 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF28_1786 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF28_1787 PF01979 Amidohydrolase family BF28_1788 PF00117 Glutamine amidotransferase class-I BF28_1788 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF28_1789 PF02142 MGS-like domain BF28_1789 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_1789 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF28_179 PF14175 BF28_179 BF28_1790 PF00175 Oxidoreductase NAD-binding domain BF28_1790 PF00970 Oxidoreductase FAD-binding domain BF28_1790 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF28_1791 PF01180 Dihydroorotate dehydrogenase BF28_1792 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF28_1793 PF00156 Phosphoribosyl transferase domain BF28_1794 PF10852 BF28_1794 BF28_1796 PF14037 BF28_1796 BF28_1797 PF14037 BF28_1797 BF28_1798 PF04978 Protein of unknown function (DUF664) BF28_1799 PF00557 Metallopeptidase family M24 BF28_1799 PF01321 Creatinase/Prolidase N-terminal domain BF28_18 PF01522 Polysaccharide deacetylase BF28_1800 PF05670 BF28_1800 BF28_1800 PF05833 Fibronectin-binding protein A N-terminus (FbpA) BF28_1801 PF00122 E1-E2 ATPase BF28_1801 PF00689 Cation transporting ATPase, C-terminus BF28_1801 PF00690 Cation transporter/ATPase, N-terminus BF28_1801 PF00702 haloacid dehalogenase-like hydrolase BF28_1802 PF03755 BF28_1802 BF28_1802 PF08340 BF28_1802 BF28_1803 PF04025 BF28_1803 BF28_1804 PF00625 Guanylate kinase BF28_1805 PF01192 RNA polymerase Rpb6 BF28_1806 PF02441 Flavoprotein BF28_1806 PF04127 DNA / pantothenate metabolism flavoprotein BF28_1807 PF00271 Helicase conserved C-terminal domain BF28_1807 PF04851 Type III restriction enzyme, res subunit BF28_1808 PF01327 Polypeptide deformylase BF28_1809 PF00551 Formyl transferase BF28_1809 PF02911 Formyl transferase, C-terminal domain BF28_1810 PF01029 NusB family BF28_1810 PF01189 NOL1/NOP2/sun family BF28_1811 PF04055 Radical SAM superfamily BF28_1811 PF13394 4Fe-4S single cluster domain BF28_1812 PF13672 Protein phosphatase 2C BF28_1813 PF00069 Protein kinase domain BF28_1813 PF03793 PASTA domain BF28_1814 PF03193 Protein of unknown function, DUF258 BF28_1814 PF16745 BF28_1814 BF28_1815 PF00834 Ribulose-phosphate 3 epimerase family BF28_1816 PF04263 Thiamin pyrophosphokinase, catalytic domain BF28_1816 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BF28_1817 PF00830 Ribosomal L28 family BF28_1818 PF03780 BF28_1818 BF28_1819 PF02734 DAK2 domain BF28_1819 PF13684 Dihydroxyacetone kinase family BF28_1820 PF00270 DEAD/DEAH box helicase BF28_1820 PF00271 Helicase conserved C-terminal domain BF28_1820 PF17191 BF28_1820 BF28_1821 PF03061 Thioesterase superfamily BF28_1822 PF02504 Fatty acid synthesis protein BF28_1823 PF00698 Acyl transferase domain BF28_1824 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_1825 PF00550 Phosphopantetheine attachment site BF28_1826 PF00035 Double-stranded RNA binding motif BF28_1826 PF14622 Ribonuclease-III-like BF28_1827 PF02463 RecF/RecN/SMC N terminal domain BF28_1827 PF06470 SMC proteins Flexible Hinge Domain BF28_1828 PF00448 SRP54-type protein, GTPase domain BF28_1828 PF02881 SRP54-type protein, helical bundle domain BF28_1829 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BF28_1830 PF00448 SRP54-type protein, GTPase domain BF28_1830 PF02881 SRP54-type protein, helical bundle domain BF28_1830 PF02978 Signal peptide binding domain BF28_1831 PF00886 Ribosomal protein S16 BF28_1832 PF13083 KH domain BF28_1833 PF01782 RimM N-terminal domain BF28_1833 PF05239 PRC-barrel domain BF28_1834 PF01746 tRNA (Guanine-1)-methyltransferase BF28_1835 PF01245 Ribosomal protein L19 BF28_1836 PF00717 Peptidase S24-like BF28_1837 PF01926 50S ribosome-binding GTPase BF28_1838 PF01351 Ribonuclease HII BF28_1839 PF00549 CoA-ligase BF28_1839 PF08442 ATP-grasp domain BF28_1840 PF00549 CoA-ligase BF28_1840 PF02629 CoA binding domain BF28_1841 PF02481 DNA recombination-mediator protein A BF28_1842 PF01131 DNA topoisomerase BF28_1842 PF01396 BF28_1842 BF28_1842 PF01751 Toprim domain BF28_1843 PF01134 Glucose inhibited division protein A BF28_1844 PF00589 Phage integrase family BF28_1844 PF02899 Phage integrase, N-terminal SAM-like domain BF28_1845 PF00227 Proteasome subunit BF28_1846 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1846 PF07724 AAA domain (Cdc48 subfamily) BF28_1846 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_1847 PF06018 CodY GAF-like domain BF28_1847 PF08222 CodY helix-turn-helix domain BF28_1848 PF00318 Ribosomal protein S2 BF28_1849 PF00889 Elongation factor TS BF28_1850 PF00696 Amino acid kinase family BF28_1851 PF01765 Ribosome recycling factor BF28_1852 PF01255 Putative undecaprenyl diphosphate synthase BF28_1853 PF01148 Cytidylyltransferase family BF28_1854 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF28_1854 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal BF28_1854 PF13288 DXP reductoisomerase C-terminal domain BF28_1855 PF02163 Peptidase family M50 BF28_1855 PF13180 PDZ domain BF28_1856 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_1856 PF03129 Anticodon binding domain BF28_1856 PF04073 Aminoacyl-tRNA editing domain BF28_1857 PF00929 Exonuclease BF28_1857 PF02811 PHP domain BF28_1857 PF07733 Bacterial DNA polymerase III alpha subunit BF28_1857 PF11490 BF28_1857 BF28_1857 PF14480 BF28_1857 BF28_1857 PF14579 Helix-hairpin-helix motif BF28_1858 PF02576 Uncharacterised BCR, YhbC family COG0779 BF28_1858 PF17384 BF28_1858 BF28_1859 PF00575 S1 RNA binding domain BF28_1859 PF08529 NusA N-terminal domain BF28_1859 PF13184 NusA-like KH domain BF28_186 PF00521 DNA gyrase/topoisomerase IV, subunit A BF28_186 PF03989 DNA gyrase C-terminal domain, beta-propeller BF28_1860 PF04296 Protein of unknown function (DUF448) BF28_1861 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF28_1862 PF00009 Elongation factor Tu GTP binding domain BF28_1862 PF04760 Translation initiation factor IF-2, N-terminal region BF28_1862 PF11987 Translation-initiation factor 2 BF28_1863 PF04456 Protein of unknown function (DUF503) BF28_1864 PF02033 Ribosome-binding factor A BF28_1865 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF28_1865 PF16198 BF28_1865 BF28_1866 PF01687 Riboflavin kinase BF28_1866 PF06574 FAD synthetase BF28_1867 PF00312 Ribosomal protein S15 BF28_1868 PF00013 KH domain BF28_1868 PF00575 S1 RNA binding domain BF28_1868 PF01138 3' exoribonuclease family, domain 1 BF28_1868 PF03725 3' exoribonuclease family, domain 2 BF28_1868 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF28_1869 PF01522 Polysaccharide deacetylase BF28_187 PF00204 DNA gyrase B BF28_187 PF00986 DNA gyrase B subunit, carboxyl terminus BF28_187 PF01751 Toprim domain BF28_187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1870 PF00675 Insulinase (Peptidase family M16) BF28_1870 PF05193 Peptidase M16 inactive domain BF28_1871 PF05239 PRC-barrel domain BF28_1872 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF28_1872 PF16924 BF28_1872 BF28_1873 PF02441 Flavoprotein BF28_1874 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF28_1874 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF28_1875 PF00696 Amino acid kinase family BF28_1875 PF13840 ACT domain BF28_1876 PF00701 Dihydrodipicolinate synthetase family BF28_1877 PF00753 Metallo-beta-lactamase superfamily BF28_1877 PF07521 RNA-metabolising metallo-beta-lactamase BF28_1878 PF00574 Clp protease BF28_1879 PF14035 BF28_1879 BF28_188 PF02463 RecF/RecN/SMC N terminal domain BF28_1880 PF01580 FtsK/SpoIIIE family BF28_1880 PF09397 Ftsk gamma domain BF28_1881 PF00392 Bacterial regulatory proteins, gntR family BF28_1881 PF07702 UTRA domain BF28_1882 PF02608 Basic membrane protein BF28_1883 PF00005 ABC transporter BF28_1884 PF02653 BF28_1884 BF28_1885 PF02653 BF28_1885 BF28_1886 PF05193 Peptidase M16 inactive domain BF28_1887 PF00675 Insulinase (Peptidase family M16) BF28_1887 PF05193 Peptidase M16 inactive domain BF28_1888 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_1889 PF11588 Protein of unknown function (DUF3243) BF28_189 PF13275 S4 domain BF28_1890 PF11868 BF28_1890 BF28_1891 PF13413 Helix-turn-helix domain BF28_1891 PF13464 BF28_1891 BF28_1892 PF01066 CDP-alcohol phosphatidyltransferase BF28_1893 PF00994 Probable molybdopterin binding domain BF28_1893 PF02464 Competence-damaged protein BF28_1894 PF00154 recA bacterial DNA recombination protein BF28_1895 PF00154 recA bacterial DNA recombination protein BF28_1896 PF00013 KH domain BF28_1896 PF01966 HD domain BF28_1896 PF12072 BF28_1896 BF28_1897 PF13277 YmdB-like protein BF28_1898 PF04232 Stage V sporulation protein S (SpoVS) BF28_1899 PF01244 Membrane dipeptidase (Peptidase family M19) BF28_19 PF14089 BF28_19 BF28_190 PF00712 DNA polymerase III beta subunit, N-terminal domain BF28_190 PF02767 DNA polymerase III beta subunit, central domain BF28_190 PF02768 DNA polymerase III beta subunit, C-terminal domain BF28_1900 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BF28_1900 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BF28_1900 PF17147 BF28_1900 BF28_1901 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_1901 PF12367 BF28_1901 BF28_1902 PF00919 Uncharacterized protein family UPF0004 BF28_1902 PF01938 TRAM domain BF28_1902 PF04055 Radical SAM superfamily BF28_1903 PF06133 Protein of unknown function (DUF964) BF28_1904 PF10628 BF28_1904 BF28_1905 PF00488 MutS domain V BF28_1905 PF01624 MutS domain I BF28_1905 PF05188 MutS domain II BF28_1905 PF05190 MutS family domain IV BF28_1905 PF05192 MutS domain III BF28_1906 PF01119 DNA mismatch repair protein, C-terminal domain BF28_1906 PF08676 MutL C terminal dimerisation domain BF28_1906 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_1907 PF12840 Helix-turn-helix domain BF28_1908 PF13714 Phosphoenolpyruvate phosphomutase BF28_1909 PF07690 Major Facilitator Superfamily BF28_191 PF00308 Bacterial dnaA protein BF28_191 PF08299 Bacterial dnaA protein helix-turn-helix BF28_191 PF11638 DnaA N-terminal domain BF28_1910 PF00551 Formyl transferase BF28_1910 PF02911 Formyl transferase, C-terminal domain BF28_1911 PF00899 ThiF family BF28_1912 PF01022 Bacterial regulatory protein, arsR family BF28_1916 PF00350 Dynamin family BF28_1916 PF13181 Tetratricopeptide repeat BF28_1917 PF00884 Sulfatase BF28_1918 PF13450 NAD(P)-binding Rossmann-like domain BF28_1919 PF01476 LysM domain BF28_1919 PF07486 Cell Wall Hydrolase BF28_192 PF00468 Ribosomal protein L34 BF28_1920 PF00082 Subtilase family BF28_1920 PF04151 Bacterial pre-peptidase C-terminal domain BF28_1921 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BF28_1923 PF00155 Aminotransferase class I and II BF28_1923 PF00392 Bacterial regulatory proteins, gntR family BF28_1924 PF03788 BF28_1924 BF28_1925 PF10787 BF28_1925 BF28_1926 PF10720 BF28_1926 BF28_1927 PF00563 EAL domain BF28_1927 PF00990 GGDEF domain BF28_1927 PF08448 PAS fold BF28_1928 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_1929 PF12146 Putative lysophospholipase BF28_193 PF00825 Ribonuclease P BF28_1930 PF00300 Histidine phosphatase superfamily (branch 1) BF28_1932 PF02588 BF28_1932 BF28_1933 PF01546 Peptidase family M20/M25/M40 BF28_1933 PF07687 Peptidase dimerisation domain BF28_1934 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_1934 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BF28_1935 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF28_1935 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF28_1936 PF02805 Metal binding domain of Ada BF28_1936 PF12833 Helix-turn-helix domain BF28_1937 PF03372 Endonuclease/Exonuclease/phosphatase family BF28_1938 PF01497 Periplasmic binding protein BF28_1939 PF01032 FecCD transport family BF28_194 PF02096 60Kd inner membrane protein BF28_1940 PF01032 FecCD transport family BF28_1941 PF00005 ABC transporter BF28_1942 PF00756 Putative esterase BF28_1944 PF02583 Metal-sensitive transcriptional repressor BF28_1945 PF00403 Heavy-metal-associated domain BF28_1946 PF00122 E1-E2 ATPase BF28_1946 PF00403 Heavy-metal-associated domain BF28_1946 PF00702 haloacid dehalogenase-like hydrolase BF28_1947 PF00216 Bacterial DNA-binding protein BF28_1948 PF01226 Formate/nitrite transporter BF28_1949 PF00149 Calcineurin-like phosphoesterase BF28_195 PF01424 R3H domain BF28_195 PF13083 KH domain BF28_195 PF14804 Jag N-terminus BF28_1950 PF00704 Glycosyl hydrolases family 18 BF28_1951 PF00324 Amino acid permease BF28_1954 PF04238 BF28_1954 BF28_1955 PF00465 Iron-containing alcohol dehydrogenase BF28_1956 PF00455 BF28_1956 BF28_1956 PF08220 DeoR-like helix-turn-helix domain BF28_1957 PF00294 pfkB family carbohydrate kinase BF28_1958 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF28_1958 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_1959 PF06725 3D domain BF28_1959 PF08239 Bacterial SH3 domain BF28_196 PF01926 50S ribosome-binding GTPase BF28_196 PF10396 GTP-binding protein TrmE N-terminus BF28_196 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE BF28_1961 PF01715 IPP transferase BF28_1962 PF17209 BF28_1962 BF28_1963 PF01391 Collagen triple helix repeat (20 copies) BF28_1964 PF00589 Phage integrase family BF28_1964 PF13495 Phage integrase, N-terminal SAM-like domain BF28_1965 PF00004 ATPase family associated with various cellular activities (AAA) BF28_1967 PF03458 BF28_1967 BF28_1968 PF01926 50S ribosome-binding GTPase BF28_1968 PF13167 BF28_1968 BF28_1968 PF16360 BF28_1968 BF28_1969 PF06838 Methionine gamma-lyase BF28_197 PF01134 Glucose inhibited division protein A BF28_197 PF13932 GidA associated domain 3 BF28_1970 PF13411 MerR HTH family regulatory protein BF28_1971 PF00120 Glutamine synthetase, catalytic domain BF28_1971 PF03951 Glutamine synthetase, beta-Grasp domain BF28_1972 PF00589 Phage integrase family BF28_1972 PF14657 BF28_1972 BF28_1972 PF14659 Phage integrase, N-terminal SAM-like domain BF28_1974 PF06114 Domain of unknown function (DUF955) BF28_1975 PF01381 Helix-turn-helix BF28_1976 PF01381 Helix-turn-helix BF28_1977 PF09669 BF28_1977 BF28_1977 PF10552 BF28_1977 BF28_198 PF02527 rRNA small subunit methyltransferase G BF28_1981 PF05565 BF28_1981 BF28_1982 PF06378 BF28_1982 BF28_1984 PF09524 BF28_1984 BF28_1985 PF01695 IstB-like ATP binding protein BF28_1989 PF08761 dUTPase BF28_199 PF02195 ParB-like nuclease domain BF28_1990 PF02511 Thymidylate synthase complementing protein BF28_1992 PF04471 Restriction endonuclease BF28_1995 PF14470 Bacterial PH domain BF28_1997 PF08281 Sigma-70, region 4 BF28_1998 PF14279 BF28_1998 BF28_1999 PF03235 BF28_1999 BF28_1999 PF07510 BF28_1999 BF28_2 PF00491 Arginase family BF28_200 PF13614 AAA domain BF28_2001 PF12728 Helix-turn-helix domain BF28_2002 PF15919 BF28_2002 BF28_2004 PF01844 HNH endonuclease BF28_2006 PF03354 BF28_2006 BF28_2007 PF01541 GIY-YIG catalytic domain BF28_2007 PF07460 NUMOD3 motif (2 copies) BF28_2008 PF03354 BF28_2008 BF28_2009 PF04860 Phage portal protein BF28_201 PF01381 Helix-turn-helix BF28_201 PF02195 ParB-like nuclease domain BF28_2010 PF04586 BF28_2010 BF28_2011 PF05065 Phage capsid family BF28_2014 PF05521 Phage head-tail joining protein BF28_2015 PF04883 BF28_2015 BF28_202 PF06866 BF28_202 BF28_2022 PF05709 Phage tail protein BF28_2025 PF10779 BF28_2025 BF28_2027 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_2027 PF06347 Bacterial SH3 domain BF28_2028 PF14491 BF28_2028 BF28_2029 PF13175 AAA ATPase domain BF28_203 PF00924 Mechanosensitive ion channel BF28_2032 PF13289 BF28_2032 BF28_2035 PF06013 Proteins of 100 residues with WXG BF28_2036 PF03551 Transcriptional regulator PadR-like family BF28_2037 PF08006 BF28_2037 BF28_2038 PF13349 BF28_2038 BF28_2039 PF00717 Peptidase S24-like BF28_2039 PF01726 LexA DNA binding domain BF28_204 PF06107 BF28_204 BF28_2040 PF00239 Resolvase, N terminal domain BF28_2041 PF05979 Bacterial protein of unknown function (DUF896) BF28_2042 PF00149 Calcineurin-like phosphoesterase BF28_2042 PF02872 5'-nucleotidase, C-terminal domain BF28_2043 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein BF28_2044 PF00005 ABC transporter BF28_2045 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2046 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2047 PF00456 Transketolase, thiamine diphosphate binding domain BF28_2047 PF02779 Transketolase, pyrimidine binding domain BF28_2047 PF02780 Transketolase, C-terminal domain BF28_2048 PF10747 Protein of unknown function (DUF2522) BF28_2049 PF03672 BF28_2049 BF28_205 PF01926 50S ribosome-binding GTPase BF28_205 PF06071 Protein of unknown function (DUF933) BF28_2050 PF00005 ABC transporter BF28_2050 PF00664 ABC transporter transmembrane region BF28_2051 PF00005 ABC transporter BF28_2051 PF00664 ABC transporter transmembrane region BF28_2052 PF08378 BF28_2052 BF28_2054 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_2055 PF00395 S-layer homology domain BF28_2057 PF01925 BF28_2057 BF28_2058 PF13043 BF28_2058 BF28_2059 PF00293 NUDIX domain BF28_206 PF01250 Ribosomal protein S6 BF28_2060 PF04172 BF28_2060 BF28_2061 PF03788 BF28_2061 BF28_2062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2062 PF03466 LysR substrate binding domain BF28_2064 PF00005 ABC transporter BF28_2065 PF12679 BF28_2065 BF28_2066 PF01546 Peptidase family M20/M25/M40 BF28_2066 PF07687 Peptidase dimerisation domain BF28_2068 PF00892 EamA-like transporter family BF28_2069 PF02683 BF28_2069 BF28_207 PF00436 Single-strand binding protein family BF28_2070 PF07301 BF28_2070 BF28_2071 PF01345 BF28_2071 BF28_2074 PF11084 BF28_2074 BF28_2076 PF13521 AAA domain BF28_2077 PF01965 DJ-1/PfpI family BF28_2078 PF08241 Methyltransferase domain BF28_2079 PF09021 HutP BF28_208 PF01084 Ribosomal protein S18 BF28_2080 PF00221 Aromatic amino acid lyase BF28_2081 PF01175 Urocanase BF28_2081 PF17391 BF28_2081 BF28_2081 PF17392 BF28_2081 BF28_2082 PF01979 Amidohydrolase family BF28_2083 PF00491 Arginase family BF28_2084 PF02559 CarD-like/TRCF domain BF28_2085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF28_2086 PF01645 Conserved region in glutamate synthase BF28_2087 PF00474 Sodium:solute symporter family BF28_2088 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2089 PF02230 Phospholipase/Carboxylesterase BF28_209 PF09991 BF28_209 BF28_2090 PF00512 His Kinase A (phospho-acceptor) domain BF28_2090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2090 PF08448 PAS fold BF28_2090 PF13426 PAS domain BF28_2091 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2092 PF02588 BF28_2092 BF28_2092 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_2093 PF13672 Protein phosphatase 2C BF28_2094 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_2095 PF09932 BF28_2095 BF28_2097 PF00395 S-layer homology domain BF28_2097 PF16103 BF28_2097 BF28_2098 PF05532 CsbD-like BF28_21 PF01883 Domain of unknown function DUF59 BF28_21 PF10609 ParA/MinD ATPase like BF28_210 PF01368 DHH family BF28_210 PF02272 DHHA1 domain BF28_2101 PF00501 AMP-binding enzyme BF28_2101 PF13193 AMP-binding enzyme C-terminal domain BF28_2102 PF02632 BioY family BF28_2103 PF00501 AMP-binding enzyme BF28_2103 PF13193 AMP-binding enzyme C-terminal domain BF28_2104 PF00108 Thiolase, N-terminal domain BF28_2104 PF02803 Thiolase, C-terminal domain BF28_2106 PF00293 NUDIX domain BF28_2107 PF01411 tRNA synthetases class II (A) BF28_2107 PF02272 DHHA1 domain BF28_2107 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_2109 PF07690 Major Facilitator Superfamily BF28_211 PF01281 Ribosomal protein L9, N-terminal domain BF28_211 PF03948 Ribosomal protein L9, C-terminal domain BF28_2111 PF08179 BF28_2111 BF28_2113 PF01522 Polysaccharide deacetylase BF28_2114 PF08175 BF28_2114 BF28_2115 PF00330 Aconitase family (aconitate hydratase) BF28_2115 PF00694 Aconitase C-terminal domain BF28_2116 PF00005 ABC transporter BF28_2116 PF00664 ABC transporter transmembrane region BF28_2118 PF00578 AhpC/TSA family BF28_2119 PF00929 Exonuclease BF28_212 PF00772 DnaB-like helicase N terminal domain BF28_212 PF03796 DnaB-like helicase C terminal domain BF28_2120 PF13040 BF28_2120 BF28_2121 PF08177 BF28_2121 BF28_2123 PF00704 Glycosyl hydrolases family 18 BF28_2123 PF01476 LysM domain BF28_2124 PF03061 Thioesterase superfamily BF28_2125 PF01521 Iron-sulphur cluster biosynthesis BF28_2126 PF02660 BF28_2126 BF28_2127 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF28_2128 PF04055 Radical SAM superfamily BF28_2128 PF13353 4Fe-4S single cluster domain BF28_2129 PF00072 Response regulator receiver domain BF28_2129 PF00486 Transcriptional regulatory protein, C terminal BF28_213 PF00709 Adenylosuccinate synthetase BF28_2130 PF13180 PDZ domain BF28_2130 PF13365 Trypsin-like peptidase domain BF28_2131 PF13380 CoA binding domain BF28_2132 PF00204 DNA gyrase B BF28_2132 PF00986 DNA gyrase B subunit, carboxyl terminus BF28_2132 PF01751 Toprim domain BF28_2132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2133 PF00521 DNA gyrase/topoisomerase IV, subunit A BF28_2133 PF03989 DNA gyrase C-terminal domain, beta-propeller BF28_2134 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_2134 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_2135 PF00440 Bacterial regulatory proteins, tetR family BF28_2136 PF00005 ABC transporter BF28_2137 PF12679 BF28_2137 BF28_2138 PF04542 Sigma-70 region 2 BF28_2138 PF08281 Sigma-70, region 4 BF28_2140 PF03816 Cell envelope-related transcriptional attenuator domain BF28_2141 PF00375 Sodium:dicarboxylate symporter family BF28_2142 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2143 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2144 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2145 PF13649 Methyltransferase domain BF28_2148 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2150 PF13809 BF28_2150 BF28_2152 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_2153 PF03845 BF28_2153 BF28_2154 PF03323 BF28_2154 BF28_2155 PF00384 Molybdopterin oxidoreductase BF28_2155 PF01568 Molydopterin dinucleotide binding domain BF28_2155 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF28_2155 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_2155 PF12838 4Fe-4S dicluster domain BF28_2155 PF13510 2Fe-2S iron-sulfur cluster binding domain BF28_2156 PF07849 BF28_2156 BF28_2157 PF10057 BF28_2157 BF28_2158 PF02634 FdhD/NarQ family BF28_2159 PF04055 Radical SAM superfamily BF28_2159 PF06463 Molybdenum Cofactor Synthesis C BF28_2159 PF13353 4Fe-4S single cluster domain BF28_2160 PF01226 Formate/nitrite transporter BF28_2161 PF00899 ThiF family BF28_2162 PF00994 Probable molybdopterin binding domain BF28_2162 PF03453 MoeA N-terminal region (domain I and II) BF28_2162 PF03454 MoeA C-terminal region (domain IV) BF28_2163 PF02391 MoaE protein BF28_2164 PF02597 ThiS family BF28_2165 PF01883 Domain of unknown function DUF59 BF28_2165 PF10609 ParA/MinD ATPase like BF28_2168 PF06961 BF28_2168 BF28_2169 PF00892 EamA-like transporter family BF28_2170 PF02681 BF28_2170 BF28_2171 PF13243 Prenyltransferase-like BF28_2171 PF13249 Prenyltransferase-like BF28_2172 PF14151 BF28_2172 BF28_2173 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_2174 PF00171 Aldehyde dehydrogenase family BF28_2175 PF06196 BF28_2175 BF28_2176 PF00474 Sodium:solute symporter family BF28_2177 PF01156 Inosine-uridine preferring nucleoside hydrolase BF28_2178 PF13354 Beta-lactamase enzyme family BF28_2179 PF00206 Lyase BF28_2179 PF14698 Argininosuccinate lyase C-terminal BF28_218 PF00072 Response regulator receiver domain BF28_218 PF00486 Transcriptional regulatory protein, C terminal BF28_2180 PF00583 Acetyltransferase (GNAT) family BF28_2181 PF00106 short chain dehydrogenase BF28_2182 PF01345 BF28_2182 BF28_2183 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_2184 PF04266 ASCH domain BF28_2185 PF00293 NUDIX domain BF28_2186 PF01184 BF28_2186 BF28_2187 PF00258 Flavodoxin BF28_2189 PF00313 'Cold-shock' DNA-binding domain BF28_219 PF00512 His Kinase A (phospho-acceptor) domain BF28_219 PF00672 HAMP domain BF28_219 PF00989 PAS fold BF28_219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2190 PF00929 Exonuclease BF28_2192 PF13037 BF28_2192 BF28_2192 PF13039 BF28_2192 BF28_2194 PF04294 BF28_2194 BF28_2195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2197 PF13302 Acetyltransferase (GNAT) domain BF28_2198 PF02308 BF28_2198 BF28_2199 PF00801 PKD domain BF28_2199 PF01752 Collagenase BF28_2199 PF08453 Peptidase family M9 N-terminal BF28_22 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_220 PF07435 YycH protein BF28_2200 PF00378 Enoyl-CoA hydratase/isomerase family BF28_2201 PF00535 Glycosyl transferase family 2 BF28_2201 PF08241 Methyltransferase domain BF28_2202 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BF28_2203 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_2204 PF05050 Methyltransferase FkbM domain BF28_2205 PF13692 Glycosyl transferases group 1 BF28_2206 PF11070 BF28_2206 BF28_2207 PF01565 FAD binding domain BF28_2207 PF02913 FAD linked oxidases, C-terminal domain BF28_2208 PF01758 Sodium Bile acid symporter family BF28_2209 PF14079 BF28_2209 BF28_221 PF09648 YycH protein BF28_2212 PF04299 Putative FMN-binding domain BF28_2215 PF02696 BF28_2215 BF28_2216 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2216 PF13602 Zinc-binding dehydrogenase BF28_2217 PF01022 Bacterial regulatory protein, arsR family BF28_2218 PF01494 FAD binding domain BF28_222 PF00753 Metallo-beta-lactamase superfamily BF28_2222 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_2223 PF02698 DUF218 domain BF28_2224 PF13079 BF28_2224 BF28_2225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2225 PF03466 LysR substrate binding domain BF28_2226 PF07690 Major Facilitator Superfamily BF28_2228 PF00144 Beta-lactamase BF28_2229 PF01432 Peptidase family M3 BF28_2229 PF08439 Oligopeptidase F BF28_223 PF13180 PDZ domain BF28_223 PF13365 Trypsin-like peptidase domain BF28_2230 PF00797 N-acetyltransferase BF28_2231 PF00488 MutS domain V BF28_2232 PF00583 Acetyltransferase (GNAT) family BF28_2233 PF00300 Histidine phosphatase superfamily (branch 1) BF28_2236 PF00107 Zinc-binding dehydrogenase BF28_2236 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2237 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2237 PF03466 LysR substrate binding domain BF28_2238 PF10901 BF28_2238 BF28_2239 PF10901 BF28_2239 BF28_224 PF14116 BF28_224 BF28_2240 PF02517 CAAX protease self-immunity BF28_2241 PF05163 DinB family BF28_2242 PF12867 DinB superfamily BF28_2243 PF13170 BF28_2243 BF28_2244 PF02567 Phenazine biosynthesis-like protein BF28_2245 PF05675 BF28_2245 BF28_2246 PF01032 FecCD transport family BF28_2247 PF01032 FecCD transport family BF28_2248 PF01497 Periplasmic binding protein BF28_2249 PF13302 Acetyltransferase (GNAT) domain BF28_225 PF02590 Predicted SPOUT methyltransferase BF28_2250 PF01166 TSC-22/dip/bun family BF28_2251 PF03600 Citrate transporter BF28_2252 PF08830 Protein of unknown function (DUF1806) BF28_2253 PF02585 GlcNAc-PI de-N-acetylase BF28_2257 PF10779 BF28_2257 BF28_2259 PF07690 Major Facilitator Superfamily BF28_2260 PF00324 Amino acid permease BF28_2261 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2261 PF13602 Zinc-binding dehydrogenase BF28_2262 PF00753 Metallo-beta-lactamase superfamily BF28_2264 PF07726 ATPase family associated with various cellular activities (AAA) BF28_2265 PF01882 BF28_2265 BF28_2268 PF04657 BF28_2268 BF28_2269 PF04657 BF28_2269 BF28_2270 PF00027 Cyclic nucleotide-binding domain BF28_2270 PF13545 Crp-like helix-turn-helix domain BF28_2272 PF13738 Pyridine nucleotide-disulphide oxidoreductase BF28_2274 PF00144 Beta-lactamase BF28_2277 PF12650 BF28_2277 BF28_2278 PF03819 MazG nucleotide pyrophosphohydrolase domain BF28_228 PF04055 Radical SAM superfamily BF28_228 PF13186 Iron-sulfur cluster-binding domain BF28_228 PF13394 4Fe-4S single cluster domain BF28_2281 PF00753 Metallo-beta-lactamase superfamily BF28_2284 PF03063 Prismane/CO dehydrogenase family BF28_2285 PF03551 Transcriptional regulator PadR-like family BF28_2286 PF06304 Protein of unknown function (DUF1048) BF28_2287 PF00005 ABC transporter BF28_2288 PF01061 BF28_2288 BF28_2289 PF05656 BF28_2289 BF28_229 PF01432 Peptidase family M3 BF28_229 PF08439 Oligopeptidase F BF28_2290 PF08279 HTH domain BF28_2290 PF13280 BF28_2290 BF28_2291 PF14526 Integron-associated effector binding protein BF28_2292 PF06013 Proteins of 100 residues with WXG BF28_2294 PF13780 BF28_2294 BF28_2297 PF13124 BF28_2297 BF28_2298 PF00440 Bacterial regulatory proteins, tetR family BF28_2299 PF02517 CAAX protease self-immunity BF28_23 PF10730 BF28_23 BF28_230 PF00478 IMP dehydrogenase / GMP reductase domain BF28_2300 PF00535 Glycosyl transferase family 2 BF28_2300 PF02709 N-terminal domain of galactosyltransferase BF28_2301 PF04542 Sigma-70 region 2 BF28_2302 PF12791 BF28_2302 BF28_2303 PF00704 Glycosyl hydrolases family 18 BF28_2303 PF01522 Polysaccharide deacetylase BF28_2303 PF13641 Glycosyltransferase like family 2 BF28_2304 PF12840 Helix-turn-helix domain BF28_2307 PF01494 FAD binding domain BF28_2308 PF01638 HxlR-like helix-turn-helix BF28_2309 PF02525 Flavodoxin-like fold BF28_231 PF01757 BF28_231 BF28_2310 PF00501 AMP-binding enzyme BF28_2310 PF13193 AMP-binding enzyme C-terminal domain BF28_2311 PF13302 Acetyltransferase (GNAT) domain BF28_2312 PF13302 Acetyltransferase (GNAT) domain BF28_2313 PF00583 Acetyltransferase (GNAT) family BF28_2314 PF02567 Phenazine biosynthesis-like protein BF28_2316 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase BF28_2318 PF00753 Metallo-beta-lactamase superfamily BF28_2319 PF13472 GDSL-like Lipase/Acylhydrolase family BF28_232 PF00270 DEAD/DEAH box helicase BF28_232 PF00271 Helicase conserved C-terminal domain BF28_232 PF03880 DbpA RNA binding domain BF28_2320 PF10604 Polyketide cyclase / dehydrase and lipid transport BF28_2321 PF00248 Aldo/keto reductase family BF28_2322 PF01638 HxlR-like helix-turn-helix BF28_2323 PF01638 HxlR-like helix-turn-helix BF28_2324 PF02353 Mycolic acid cyclopropane synthetase BF28_2325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_2325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_2326 PF00392 Bacterial regulatory proteins, gntR family BF28_2326 PF07702 UTRA domain BF28_2327 PF01638 HxlR-like helix-turn-helix BF28_2328 PF03960 ArsC family BF28_233 PF08876 BF28_233 BF28_2331 PF02082 Transcriptional regulator BF28_2332 PF08858 IDEAL domain BF28_2333 PF03222 Tryptophan/tyrosine permease family BF28_2334 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2335 PF03928 Domain of unknown function (DUF336) BF28_2336 PF01361 Tautomerase enzyme BF28_2337 PF07690 Major Facilitator Superfamily BF28_2338 PF00248 Aldo/keto reductase family BF28_234 PF03006 BF28_234 BF28_2340 PF00881 Nitroreductase family BF28_2341 PF01638 HxlR-like helix-turn-helix BF28_2342 PF00925 GTP cyclohydrolase II BF28_2343 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_2343 PF01872 RibD C-terminal domain BF28_2344 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) BF28_2346 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_2346 PF00672 HAMP domain BF28_2346 PF12729 BF28_2346 BF28_2347 PF03272 BF28_2347 BF28_2347 PF13402 Peptidase M60-like family BF28_2348 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_2348 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_2348 PF03413 Peptidase propeptide and YPEB domain BF28_2348 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_2349 PF00106 short chain dehydrogenase BF28_235 PF16363 BF28_235 BF28_2351 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2351 PF13602 Zinc-binding dehydrogenase BF28_2353 PF00296 Luciferase-like monooxygenase BF28_2354 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2354 PF13602 Zinc-binding dehydrogenase BF28_2355 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF28_2356 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF28_2356 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF28_2357 PF00456 Transketolase, thiamine diphosphate binding domain BF28_2357 PF02779 Transketolase, pyrimidine binding domain BF28_2357 PF02780 Transketolase, C-terminal domain BF28_2358 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF28_2358 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_2359 PF00923 Transaldolase BF28_2360 PF02447 BF28_2360 BF28_2361 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_2361 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_2362 PF10282 Lactonase, 7-bladed beta-propeller BF28_2363 PF06906 BF28_2363 BF28_2364 PF00805 Pentapeptide repeats (8 copies) BF28_2365 PF00892 EamA-like transporter family BF28_2366 PF07653 Variant SH3 domain BF28_2367 PF01370 NAD dependent epimerase/dehydratase family BF28_2368 PF13704 BF28_2368 BF28_2369 PF08421 Putative zinc binding domain BF28_2369 PF08484 C-methyltransferase C-terminal domain BF28_2369 PF13489 Methyltransferase domain BF28_237 PF02293 AmiS/UreI family transporter BF28_2370 PF16363 BF28_2370 BF28_2371 PF00483 Nucleotidyl transferase BF28_2372 PF13704 BF28_2372 BF28_2373 PF13411 MerR HTH family regulatory protein BF28_2374 PF00571 CBS domain BF28_2374 PF01595 BF28_2374 BF28_2374 PF03471 Transporter associated domain BF28_2375 PF03899 BF28_2375 BF28_2376 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_2377 PF13061 BF28_2377 BF28_2379 PF07719 Tetratricopeptide repeat BF28_2379 PF13181 Tetratricopeptide repeat BF28_2379 PF13432 Tetratricopeptide repeat BF28_238 PF01370 NAD dependent epimerase/dehydratase family BF28_2380 PF07690 Major Facilitator Superfamily BF28_2381 PF11706 CGNR zinc finger BF28_2382 PF08241 Methyltransferase domain BF28_2384 PF00583 Acetyltransferase (GNAT) family BF28_2385 PF04226 BF28_2385 BF28_2386 PF01594 BF28_2386 BF28_2387 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF28_2387 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal BF28_2387 PF13288 DXP reductoisomerase C-terminal domain BF28_2388 PF00579 tRNA synthetases class I (W and Y) BF28_239 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF28_239 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF28_2390 PF00005 ABC transporter BF28_2391 PF02687 BF28_2391 BF28_2391 PF12704 MacB-like periplasmic core domain BF28_2392 PF12464 Maltose acetyltransferase BF28_2392 PF14602 Hexapeptide repeat of succinyl-transferase BF28_2393 PF00083 Sugar (and other) transporter BF28_2394 PF07690 Major Facilitator Superfamily BF28_2395 PF00480 ROK family BF28_2396 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2397 PF00293 NUDIX domain BF28_2398 PF10978 BF28_2398 BF28_24 PF00380 Ribosomal protein S9/S16 BF28_240 PF02898 Nitric oxide synthase, oxygenase domain BF28_2401 PF13350 Tyrosine phosphatase family BF28_2402 PF01636 Phosphotransferase enzyme family BF28_2403 PF13419 Haloacid dehalogenase-like hydrolase BF28_2405 PF01381 Helix-turn-helix BF28_2406 PF12676 BF28_2406 BF28_2408 PF00005 ABC transporter BF28_2409 PF16949 BF28_2409 BF28_241 PF02028 BCCT family transporter BF28_2410 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_2412 PF00224 Pyruvate kinase, barrel domain BF28_2413 PF06949 BF28_2413 BF28_2414 PF00881 Nitroreductase family BF28_2415 PF01638 HxlR-like helix-turn-helix BF28_2417 PF03129 Anticodon binding domain BF28_2417 PF13393 Histidyl-tRNA synthetase BF28_2418 PF00072 Response regulator receiver domain BF28_2418 PF00196 Bacterial regulatory proteins, luxR family BF28_2418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2418 PF07730 Histidine kinase BF28_2419 PF00144 Beta-lactamase BF28_242 PF07690 Major Facilitator Superfamily BF28_2420 PF04073 Aminoacyl-tRNA editing domain BF28_2422 PF01381 Helix-turn-helix BF28_2423 PF12146 Putative lysophospholipase BF28_2424 PF11139 BF28_2424 BF28_2425 PF13411 MerR HTH family regulatory protein BF28_2429 PF10020 BF28_2429 BF28_243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_243 PF06580 BF28_243 BF28_243 PF07694 5TMR of 5TMR-LYT BF28_243 PF15714 BF28_243 BF28_2430 PF03606 BF28_2430 BF28_2431 PF03737 Demethylmenaquinone methyltransferase BF28_2432 PF14478 Domain of unknown function (DUF4430) BF28_2433 PF14478 Domain of unknown function (DUF4430) BF28_2434 PF02361 Cobalt transport protein BF28_2435 PF00005 ABC transporter BF28_2436 PF07155 ECF-type riboflavin transporter, S component BF28_2437 PF14256 BF28_2437 BF28_244 PF00072 Response regulator receiver domain BF28_244 PF04397 LytTr DNA-binding domain BF28_2440 PF04434 BF28_2440 BF28_2441 PF02525 Flavodoxin-like fold BF28_2443 PF02667 BF28_2443 BF28_2444 PF01289 Thiol-activated cytolysin BF28_2444 PF17440 BF28_2444 BF28_2446 PF00144 Beta-lactamase BF28_2447 PF07690 Major Facilitator Superfamily BF28_2448 PF01047 MarR family BF28_2449 PF00561 alpha/beta hydrolase fold BF28_245 PF03788 BF28_245 BF28_2450 PF07690 Major Facilitator Superfamily BF28_2451 PF14044 BF28_2451 BF28_2452 PF14106 BF28_2452 BF28_2453 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2454 PF00395 S-layer homology domain BF28_2455 PF13034 BF28_2455 BF28_2456 PF08713 DNA alkylation repair enzyme BF28_2458 PF07690 Major Facilitator Superfamily BF28_2459 PF00440 Bacterial regulatory proteins, tetR family BF28_246 PF04172 BF28_246 BF28_2461 PF00395 S-layer homology domain BF28_2461 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_2462 PF07261 Replication initiation and membrane attachment BF28_2463 PF01804 Penicillin amidase BF28_2464 PF12639 DNase/tRNase domain of colicin-like bacteriocin BF28_2465 PF14568 SMI1-KNR4 cell-wall BF28_2466 PF12870 Lumazine-binding domain BF28_2467 PF12833 Helix-turn-helix domain BF28_2468 PF07883 Cupin domain BF28_247 PF01594 BF28_247 BF28_2470 PF04070 BF28_2470 BF28_2471 PF04542 Sigma-70 region 2 BF28_2471 PF08281 Sigma-70, region 4 BF28_2472 PF13791 BF28_2472 BF28_2472 PF13800 BF28_2472 BF28_2474 PF00266 Aminotransferase class-V BF28_2475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF28_2475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF28_2476 PF06245 BF28_2476 BF28_2477 PF11528 Protein of unknown function (DUF3224) BF28_2478 PF02016 LD-carboxypeptidase BF28_248 PF01625 Peptide methionine sulfoxide reductase BF28_248 PF01641 SelR domain BF28_2482 PF13239 BF28_2482 BF28_2483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_2483 PF03466 LysR substrate binding domain BF28_2484 PF02754 BF28_2484 BF28_2485 PF02589 Uncharacterised ACR, YkgG family COG1556 BF28_2485 PF11870 BF28_2485 BF28_2485 PF13183 4Fe-4S dicluster domain BF28_2486 PF02589 Uncharacterised ACR, YkgG family COG1556 BF28_2487 PF07690 Major Facilitator Superfamily BF28_2488 PF02588 BF28_2488 BF28_2488 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_2489 PF04299 Putative FMN-binding domain BF28_249 PF00873 AcrB/AcrD/AcrF family BF28_2490 PF00583 Acetyltransferase (GNAT) family BF28_2491 PF01047 MarR family BF28_2493 PF00072 Response regulator receiver domain BF28_2493 PF00486 Transcriptional regulatory protein, C terminal BF28_2494 PF00512 His Kinase A (phospho-acceptor) domain BF28_2494 PF00672 HAMP domain BF28_2494 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2495 PF05977 Transmembrane secretion effector BF28_2496 PF12840 Helix-turn-helix domain BF28_2497 PF02687 BF28_2497 BF28_2498 PF00005 ABC transporter BF28_25 PF00572 Ribosomal protein L13 BF28_250 PF00440 Bacterial regulatory proteins, tetR family BF28_2501 PF04072 Leucine carboxyl methyltransferase BF28_2502 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_2502 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_2503 PF02655 ATP-grasp domain BF28_2504 PF01370 NAD dependent epimerase/dehydratase family BF28_2505 PF00753 Metallo-beta-lactamase superfamily BF28_2508 PF01381 Helix-turn-helix BF28_251 PF00535 Glycosyl transferase family 2 BF28_2510 PF00144 Beta-lactamase BF28_2511 PF00149 Calcineurin-like phosphoesterase BF28_2511 PF13285 BF28_2511 BF28_2512 PF00291 Pyridoxal-phosphate dependent enzyme BF28_2515 PF03734 L,D-transpeptidase catalytic domain BF28_2515 PF12229 Putative peptidoglycan binding domain BF28_2517 PF01810 BF28_2517 BF28_252 PF04138 BF28_252 BF28_2521 PF07690 Major Facilitator Superfamily BF28_2522 PF00067 Cytochrome P450 BF28_2522 PF00175 Oxidoreductase NAD-binding domain BF28_2522 PF00258 Flavodoxin BF28_2522 PF00667 FAD binding domain BF28_2523 PF01047 MarR family BF28_2524 PF13564 BF28_2524 BF28_2525 PF08803 Putative mono-oxygenase ydhR BF28_2527 PF00144 Beta-lactamase BF28_2528 PF13520 Amino acid permease BF28_2529 PF02805 Metal binding domain of Ada BF28_2529 PF12833 Helix-turn-helix domain BF28_253 PF13231 BF28_253 BF28_2530 PF06718 BF28_2530 BF28_2533 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2534 PF13086 AAA domain BF28_2534 PF13087 AAA domain BF28_2535 PF01546 Peptidase family M20/M25/M40 BF28_2535 PF07687 Peptidase dimerisation domain BF28_2536 PF01037 AsnC family BF28_2536 PF13412 Winged helix-turn-helix DNA-binding BF28_2537 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_2539 PF00012 Hsp70 protein BF28_254 PF13231 BF28_254 BF28_2541 PF06889 BF28_2541 BF28_2543 PF01022 Bacterial regulatory protein, arsR family BF28_2544 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2545 PF01758 Sodium Bile acid symporter family BF28_2546 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF28_2547 PF12746 GNAT acetyltransferase BF28_2548 PF01636 Phosphotransferase enzyme family BF28_2549 PF00072 Response regulator receiver domain BF28_2549 PF00196 Bacterial regulatory proteins, luxR family BF28_255 PF00005 ABC transporter BF28_255 PF12848 ABC transporter BF28_2550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2550 PF13877 BF28_2550 BF28_2551 PF02687 BF28_2551 BF28_2552 PF00005 ABC transporter BF28_2553 PF12996 BF28_2553 BF28_2553 PF13524 Glycosyl transferases group 1 BF28_2554 PF00561 alpha/beta hydrolase fold BF28_2556 PF13104 BF28_2556 BF28_2559 PF01040 UbiA prenyltransferase family BF28_256 PF00535 Glycosyl transferase family 2 BF28_2560 PF07870 BF28_2560 BF28_2561 PF13091 PLD-like domain BF28_2563 PF03405 Fatty acid desaturase BF28_2564 PF02559 CarD-like/TRCF domain BF28_2567 PF10842 BF28_2567 BF28_2569 PF10057 BF28_2569 BF28_257 PF01943 BF28_257 BF28_2570 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BF28_2570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF28_2571 PF10070 BF28_2571 BF28_2573 PF12695 Alpha/beta hydrolase family BF28_2574 PF06486 Protein of unknown function (DUF1093) BF28_2575 PF11181 BF28_2575 BF28_2578 PF01544 CorA-like Mg2+ transporter protein BF28_2579 PF00199 Catalase BF28_2579 PF06628 Catalase-related immune-responsive BF28_258 PF03061 Thioesterase superfamily BF28_2580 PF00149 Calcineurin-like phosphoesterase BF28_2580 PF02872 5'-nucleotidase, C-terminal domain BF28_2581 PF13520 Amino acid permease BF28_2582 PF01554 MatE BF28_2583 PF00355 Rieske [2Fe-2S] domain BF28_2583 PF01266 FAD dependent oxidoreductase BF28_2584 PF00144 Beta-lactamase BF28_2585 PF03600 Citrate transporter BF28_2586 PF01235 BF28_2586 BF28_2588 PF04960 Glutaminase BF28_2589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_259 PF13231 BF28_259 BF28_2590 PF00072 Response regulator receiver domain BF28_2590 PF08664 BF28_2590 BF28_2591 PF03323 BF28_2591 BF28_2592 PF03845 BF28_2592 BF28_2593 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_2594 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_2594 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_2595 PF13520 Amino acid permease BF28_2597 PF13333 BF28_2597 BF28_2598 PF01381 Helix-turn-helix BF28_2599 PF00710 Asparaginase BF28_26 PF01416 tRNA pseudouridine synthase BF28_260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_260 PF11563 Protoglobin BF28_2600 PF00206 Lyase BF28_2600 PF10415 Fumarase C C-terminus BF28_2601 PF06486 Protein of unknown function (DUF1093) BF28_2602 PF00005 ABC transporter BF28_2603 PF02687 BF28_2603 BF28_2604 PF02687 BF28_2604 BF28_2605 PF07739 TipAS antibiotic-recognition domain BF28_2605 PF13411 MerR HTH family regulatory protein BF28_2606 PF05067 Manganese containing catalase BF28_2607 PF00107 Zinc-binding dehydrogenase BF28_2607 PF08240 Alcohol dehydrogenase GroES-like domain BF28_2607 PF13823 Alcohol dehydrogenase GroES-associated BF28_2608 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_2609 PF11553 Protein of unknown function (DUF3231) BF28_261 PF03458 BF28_261 BF28_2610 PF10710 BF28_2610 BF28_2611 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_2613 PF00324 Amino acid permease BF28_2614 PF01810 BF28_2614 BF28_2615 PF08892 BF28_2615 BF28_2617 PF07875 BF28_2617 BF28_2618 PF10002 BF28_2618 BF28_2619 PF09678 BF28_2619 BF28_262 PF13425 BF28_262 BF28_2620 PF00753 Metallo-beta-lactamase superfamily BF28_2621 PF08795 BF28_2621 BF28_2622 PF00391 PEP-utilising enzyme, mobile domain BF28_2622 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF28_2623 PF00440 Bacterial regulatory proteins, tetR family BF28_2623 PF14278 BF28_2623 BF28_2624 PF12051 BF28_2624 BF28_2625 PF00583 Acetyltransferase (GNAT) family BF28_2627 PF07670 Nucleoside recognition BF28_2629 PF13302 Acetyltransferase (GNAT) domain BF28_263 PF00534 Glycosyl transferases group 1 BF28_263 PF13439 Glycosyltransferase Family 4 BF28_2630 PF02698 DUF218 domain BF28_2631 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_2631 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_2631 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_2632 PF12867 DinB superfamily BF28_2633 PF12840 Helix-turn-helix domain BF28_2634 PF07454 BF28_2634 BF28_2636 PF03932 CutC family BF28_2637 PF00717 Peptidase S24-like BF28_2638 PF01614 Bacterial transcriptional regulator BF28_2638 PF09339 IclR helix-turn-helix domain BF28_2639 PF02682 Allophanate hydrolase subunit 1 BF28_264 PF03808 BF28_264 BF28_2640 PF02626 Allophanate hydrolase subunit 2 BF28_2641 PF03746 LamB/YcsF family BF28_2642 PF06149 BF28_2642 BF28_2643 PF06166 BF28_2643 BF28_2644 PF01470 Pyroglutamyl peptidase BF28_2645 PF02146 Sir2 family BF28_2647 PF00905 Penicillin binding protein transpeptidase domain BF28_2647 PF03717 Penicillin-binding Protein dimerisation domain BF28_2648 PF00717 Peptidase S24-like BF28_2649 PF04989 Cephalosporin hydroxylase BF28_265 PF07690 Major Facilitator Superfamily BF28_2650 PF00293 NUDIX domain BF28_2651 PF08241 Methyltransferase domain BF28_2652 PF13411 MerR HTH family regulatory protein BF28_2653 PF08713 DNA alkylation repair enzyme BF28_2654 PF01521 Iron-sulphur cluster biosynthesis BF28_2655 PF00324 Amino acid permease BF28_2656 PF13302 Acetyltransferase (GNAT) domain BF28_2657 PF01925 BF28_2657 BF28_2658 PF13468 Glyoxalase-like domain BF28_2659 PF01636 Phosphotransferase enzyme family BF28_266 PF00072 Response regulator receiver domain BF28_266 PF04397 LytTr DNA-binding domain BF28_2660 PF12850 Calcineurin-like phosphoesterase superfamily domain BF28_2661 PF00485 Phosphoribulokinase / Uridine kinase family BF28_2662 PF10978 BF28_2662 BF28_2664 PF00072 Response regulator receiver domain BF28_2664 PF00486 Transcriptional regulatory protein, C terminal BF28_2665 PF00512 His Kinase A (phospho-acceptor) domain BF28_2666 PF13031 BF28_2666 BF28_2667 PF02639 BF28_2667 BF28_2668 PF00155 Aminotransferase class I and II BF28_2668 PF00392 Bacterial regulatory proteins, gntR family BF28_2669 PF00892 EamA-like transporter family BF28_267 PF02554 BF28_267 BF28_267 PF13722 BF28_267 BF28_2670 PF00293 NUDIX domain BF28_2671 PF13140 BF28_2671 BF28_2672 PF00583 Acetyltransferase (GNAT) family BF28_2673 PF12833 Helix-turn-helix domain BF28_2673 PF14526 Integron-associated effector binding protein BF28_2674 PF00144 Beta-lactamase BF28_2676 PF02687 BF28_2676 BF28_2677 PF02687 BF28_2677 BF28_2678 PF00005 ABC transporter BF28_2679 PF01370 NAD dependent epimerase/dehydratase family BF28_268 PF04328 BF28_268 BF28_2680 PF00392 Bacterial regulatory proteins, gntR family BF28_2681 PF00005 ABC transporter BF28_2682 PF13346 BF28_2682 BF28_2683 PF14118 BF28_2683 BF28_2684 PF00293 NUDIX domain BF28_2686 PF00009 Elongation factor Tu GTP binding domain BF28_2686 PF00679 Elongation factor G C-terminus BF28_2686 PF03764 Elongation factor G, domain IV BF28_2686 PF14492 Elongation Factor G, domain II BF28_2687 PF01047 MarR family BF28_2688 PF00881 Nitroreductase family BF28_2689 PF03992 Antibiotic biosynthesis monooxygenase BF28_269 PF00990 GGDEF domain BF28_269 PF07694 5TMR of 5TMR-LYT BF28_2690 PF07726 ATPase family associated with various cellular activities (AAA) BF28_2691 PF01882 BF28_2691 BF28_2693 PF13042 BF28_2693 BF28_2694 PF00144 Beta-lactamase BF28_2696 PF01810 BF28_2696 BF28_2698 PF01979 Amidohydrolase family BF28_2698 PF13382 Adenine deaminase C-terminal domain BF28_2699 PF01047 MarR family BF28_27 PF02361 Cobalt transport protein BF28_270 PF08543 Phosphomethylpyrimidine kinase BF28_2700 PF05935 Arylsulfotransferase (ASST) BF28_2701 PF09084 NMT1/THI5 like BF28_2702 PF00005 ABC transporter BF28_2703 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2704 PF00199 Catalase BF28_2704 PF06628 Catalase-related immune-responsive BF28_2705 PF00202 Aminotransferase class-III BF28_2707 PF00535 Glycosyl transferase family 2 BF28_2708 PF00535 Glycosyl transferase family 2 BF28_271 PF07730 Histidine kinase BF28_271 PF13185 GAF domain BF28_2711 PF00535 Glycosyl transferase family 2 BF28_2713 PF07690 Major Facilitator Superfamily BF28_2714 PF13210 BF28_2714 BF28_2715 PF01882 BF28_2715 BF28_2716 PF07726 ATPase family associated with various cellular activities (AAA) BF28_2717 PF03551 Transcriptional regulator PadR-like family BF28_2718 PF11193 BF28_2718 BF28_2719 PF02517 CAAX protease self-immunity BF28_272 PF00072 Response regulator receiver domain BF28_272 PF00196 Bacterial regulatory proteins, luxR family BF28_2721 PF12681 Glyoxalase-like domain BF28_2722 PF13302 Acetyltransferase (GNAT) domain BF28_2723 PF00485 Phosphoribulokinase / Uridine kinase family BF28_2724 PF13419 Haloacid dehalogenase-like hydrolase BF28_2726 PF00072 Response regulator receiver domain BF28_2726 PF04397 LytTr DNA-binding domain BF28_2727 PF14501 GHKL domain BF28_2728 PF10086 BF28_2728 BF28_2729 PF13026 Protein of unknown function (DUF3887) BF28_273 PF02525 Flavodoxin-like fold BF28_2731 PF13443 Cro/C1-type HTH DNA-binding domain BF28_2732 PF11188 BF28_2732 BF28_2733 PF00245 Alkaline phosphatase BF28_2734 PF00487 BF28_2734 BF28_2735 PF01139 tRNA-splicing ligase RtcB BF28_2736 PF00324 Amino acid permease BF28_2737 PF01614 Bacterial transcriptional regulator BF28_2737 PF09339 IclR helix-turn-helix domain BF28_2738 PF01546 Peptidase family M20/M25/M40 BF28_2739 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_2739 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_274 PF00027 Cyclic nucleotide-binding domain BF28_2740 PF00696 Amino acid kinase family BF28_2740 PF01472 PUA domain BF28_2741 PF00171 Aldehyde dehydrogenase family BF28_2742 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_2742 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_2743 PF12867 DinB superfamily BF28_2744 PF01022 Bacterial regulatory protein, arsR family BF28_2745 PF07690 Major Facilitator Superfamily BF28_2746 PF03992 Antibiotic biosynthesis monooxygenase BF28_2748 PF01909 Nucleotidyltransferase domain BF28_275 PF13419 Haloacid dehalogenase-like hydrolase BF28_2751 PF13302 Acetyltransferase (GNAT) domain BF28_2752 PF01791 DeoC/LacD family aldolase BF28_2753 PF07883 Cupin domain BF28_2754 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_2754 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_2755 PF04198 Putative sugar-binding domain BF28_2756 PF00005 ABC transporter BF28_2757 PF02653 BF28_2757 BF28_2758 PF02653 BF28_2758 BF28_2759 PF13407 Periplasmic binding protein domain BF28_276 PF01053 Cys/Met metabolism PLP-dependent enzyme BF28_2760 PF06039 BF28_2760 BF28_2761 PF10094 BF28_2761 BF28_2763 PF00989 PAS fold BF28_2764 PF00158 Sigma-54 interaction domain BF28_2764 PF02954 Bacterial regulatory protein, Fis family BF28_2765 PF00501 AMP-binding enzyme BF28_2765 PF13193 AMP-binding enzyme C-terminal domain BF28_2766 PF00378 Enoyl-CoA hydratase/isomerase family BF28_2768 PF13302 Acetyltransferase (GNAT) domain BF28_2769 PF06725 3D domain BF28_2769 PF08239 Bacterial SH3 domain BF28_277 PF04204 Homoserine O-succinyltransferase BF28_2770 PF13671 AAA domain BF28_2771 PF14118 BF28_2771 BF28_2772 PF13523 Acetyltransferase (GNAT) domain BF28_2773 PF00857 Isochorismatase family BF28_2774 PF10710 BF28_2774 BF28_2775 PF13212 BF28_2775 BF28_2775 PF13289 BF28_2775 BF28_2776 PF00793 DAHP synthetase I family BF28_2776 PF01817 Chorismate mutase type II BF28_2777 PF01264 Chorismate synthase BF28_2778 PF00155 Aminotransferase class I and II BF28_2779 PF02153 Prephenate dehydrogenase BF28_278 PF00742 Homoserine dehydrogenase BF28_278 PF01842 ACT domain BF28_278 PF03447 Homoserine dehydrogenase, NAD binding domain BF28_2780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF28_2781 PF13527 Acetyltransferase (GNAT) domain BF28_2781 PF13530 Sterol carrier protein domain BF28_2782 PF00440 Bacterial regulatory proteins, tetR family BF28_2782 PF16295 BF28_2782 BF28_2783 PF03176 MMPL family BF28_2786 PF00005 ABC transporter BF28_2786 PF12848 ABC transporter BF28_2787 PF00884 Sulfatase BF28_2788 PF03741 BF28_2788 BF28_2789 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF28_2789 PF00874 PRD domain BF28_2789 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_2789 PF05043 Mga helix-turn-helix domain BF28_2789 PF08279 HTH domain BF28_279 PF02588 BF28_279 BF28_2790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_2791 PF03611 BF28_2791 BF28_2792 PF01522 Polysaccharide deacetylase BF28_2793 PF08713 DNA alkylation repair enzyme BF28_2794 PF01909 Nucleotidyltransferase domain BF28_2795 PF13302 Acetyltransferase (GNAT) domain BF28_2796 PF13420 Acetyltransferase (GNAT) domain BF28_2797 PF04978 Protein of unknown function (DUF664) BF28_2798 PF13536 Multidrug resistance efflux transporter BF28_2799 PF13673 Acetyltransferase (GNAT) domain BF28_28 PF00005 ABC transporter BF28_280 PF00356 Bacterial regulatory proteins, lacI family BF28_280 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF28_2801 PF03738 Glutathionylspermidine synthase preATP-grasp BF28_2802 PF02522 Aminoglycoside 3-N-acetyltransferase BF28_2803 PF04127 DNA / pantothenate metabolism flavoprotein BF28_2804 PF12688 Tetratrico peptide repeat BF28_2807 PF00293 NUDIX domain BF28_2808 PF04167 Protein of unknown function (DUF402) BF28_2809 PF00440 Bacterial regulatory proteins, tetR family BF28_281 PF13472 GDSL-like Lipase/Acylhydrolase family BF28_2811 PF00005 ABC transporter BF28_2812 PF09084 NMT1/THI5 like BF28_2813 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2814 PF00296 Luciferase-like monooxygenase BF28_2815 PF14279 BF28_2815 BF28_2816 PF01594 BF28_2816 BF28_2817 PF09501 BF28_2817 BF28_2818 PF09501 BF28_2818 BF28_2819 PF09501 BF28_2819 BF28_282 PF00005 ABC transporter BF28_2820 PF09501 BF28_2820 BF28_2821 PF09501 BF28_2821 BF28_2823 PF16107 BF28_2823 BF28_2825 PF00392 Bacterial regulatory proteins, gntR family BF28_2826 PF00005 ABC transporter BF28_2827 PF13261 BF28_2827 BF28_2828 PF07301 BF28_2828 BF28_2829 PF13563 2'-5' RNA ligase superfamily BF28_283 PF12679 BF28_283 BF28_2830 PF03630 Fumble BF28_2831 PF07977 FabA-like domain BF28_2832 PF00155 Aminotransferase class I and II BF28_2835 PF07690 Major Facilitator Superfamily BF28_2839 PF08241 Methyltransferase domain BF28_284 PF03167 Uracil DNA glycosylase superfamily BF28_2840 PF13113 BF28_2840 BF28_2841 PF01156 Inosine-uridine preferring nucleoside hydrolase BF28_2842 PF04226 BF28_2842 BF28_2845 PF14172 BF28_2845 BF28_2846 PF07690 Major Facilitator Superfamily BF28_2847 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2847 PF12793 BF28_2847 BF28_2848 PF13171 BF28_2848 BF28_2849 PF04519 BF28_2849 BF28_285 PF12823 BF28_285 BF28_2851 PF07690 Major Facilitator Superfamily BF28_2854 PF00583 Acetyltransferase (GNAT) family BF28_2855 PF07552 BF28_2855 BF28_2857 PF07552 BF28_2857 BF28_2858 PF02645 Uncharacterised protein, DegV family COG1307 BF28_286 PF08282 haloacid dehalogenase-like hydrolase BF28_2860 PF12844 Helix-turn-helix domain BF28_2861 PF01432 Peptidase family M3 BF28_2862 PF03808 BF28_2862 BF28_2863 PF01636 Phosphotransferase enzyme family BF28_2864 PF01636 Phosphotransferase enzyme family BF28_2865 PF01048 Phosphorylase superfamily BF28_2866 PF13419 Haloacid dehalogenase-like hydrolase BF28_2868 PF00583 Acetyltransferase (GNAT) family BF28_287 PF00860 Permease family BF28_2870 PF00072 Response regulator receiver domain BF28_2870 PF00486 Transcriptional regulatory protein, C terminal BF28_2871 PF00512 His Kinase A (phospho-acceptor) domain BF28_2871 PF00672 HAMP domain BF28_2871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_2872 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BF28_2872 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF28_2873 PF13649 Methyltransferase domain BF28_2876 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_2877 PF01965 DJ-1/PfpI family BF28_2878 PF04977 Septum formation initiator BF28_2879 PF12986 Domain of unknown function (DUF3870) BF28_288 PF02080 TrkA-C domain BF28_288 PF02254 TrkA-N domain BF28_288 PF07885 Ion channel BF28_2880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF28_2880 PF13378 Enolase C-terminal domain-like BF28_2881 PF00877 NlpC/P60 family BF28_2882 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_2883 PF13302 Acetyltransferase (GNAT) domain BF28_2884 PF04914 DltD C-terminal region BF28_2887 PF09335 BF28_2887 BF28_2888 PF01966 HD domain BF28_2889 PF13302 Acetyltransferase (GNAT) domain BF28_289 PF17261 BF28_289 BF28_2890 PF12850 Calcineurin-like phosphoesterase superfamily domain BF28_2891 PF08876 BF28_2891 BF28_2893 PF10850 BF28_2893 BF28_2894 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_2895 PF13510 2Fe-2S iron-sulfur cluster binding domain BF28_2896 PF04324 BFD-like [2Fe-2S] binding domain BF28_2897 PF00158 Sigma-54 interaction domain BF28_2897 PF02954 Bacterial regulatory protein, Fis family BF28_2897 PF13596 PAS domain BF28_2898 PF01266 FAD dependent oxidoreductase BF28_2899 PF05544 Proline racemase BF28_29 PF00005 ABC transporter BF28_290 PF04241 BF28_290 BF28_2900 PF05544 Proline racemase BF28_2901 PF00701 Dihydrodipicolinate synthetase family BF28_2902 PF00171 Aldehyde dehydrogenase family BF28_2903 PF01235 BF28_2903 BF28_2904 PF02627 Carboxymuconolactone decarboxylase family BF28_2905 PF00583 Acetyltransferase (GNAT) family BF28_2906 PF03067 Chitin binding domain BF28_2907 PF01368 DHH family BF28_2907 PF02833 DHHA2 domain BF28_2908 PF01432 Peptidase family M3 BF28_2909 PF13209 BF28_2909 BF28_291 PF09671 BF28_291 BF28_2914 PF00270 DEAD/DEAH box helicase BF28_2914 PF00271 Helicase conserved C-terminal domain BF28_2914 PF00570 HRDC domain BF28_2914 PF09382 RQC domain BF28_2914 PF14493 BF28_2914 BF28_2914 PF16124 BF28_2914 BF28_2915 PF06094 AIG2-like family BF28_2916 PF13649 Methyltransferase domain BF28_2917 PF02517 CAAX protease self-immunity BF28_2918 PF13245 Part of AAA domain BF28_2918 PF13361 UvrD-like helicase C-terminal domain BF28_2918 PF13538 UvrD-like helicase C-terminal domain BF28_2919 PF06108 Protein of unknown function (DUF952) BF28_292 PF07486 Cell Wall Hydrolase BF28_2920 PF03551 Transcriptional regulator PadR-like family BF28_2922 PF13420 Acetyltransferase (GNAT) domain BF28_2924 PF00583 Acetyltransferase (GNAT) family BF28_2925 PF01183 Glycosyl hydrolases family 25 BF28_2925 PF12123 N-acetylmuramoyl-l-alanine amidase BF28_2926 PF11213 Protein of unknown function (DUF3006) BF28_2927 PF00395 S-layer homology domain BF28_2927 PF00753 Metallo-beta-lactamase superfamily BF28_2928 PF00583 Acetyltransferase (GNAT) family BF28_2929 PF04237 YjbR BF28_293 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_293 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_2930 PF08241 Methyltransferase domain BF28_2931 PF10990 BF28_2931 BF28_2932 PF01636 Phosphotransferase enzyme family BF28_2933 PF00931 NB-ARC domain BF28_2934 PF00041 Fibronectin type III domain BF28_2934 PF03067 Chitin binding domain BF28_2935 PF13673 Acetyltransferase (GNAT) domain BF28_2936 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF28_2937 PF00111 2Fe-2S iron-sulfur cluster binding domain BF28_2938 PF04542 Sigma-70 region 2 BF28_2938 PF08281 Sigma-70, region 4 BF28_2939 PF00574 Clp protease BF28_294 PF06778 Chlorite dismutase BF28_2940 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF28_2941 PF00005 ABC transporter BF28_2941 PF00571 CBS domain BF28_2942 PF00528 Binding-protein-dependent transport system inner membrane component BF28_2944 PF01230 HIT domain BF28_2945 PF13672 Protein phosphatase 2C BF28_2946 PF13789 BF28_2946 BF28_2947 PF00293 NUDIX domain BF28_2948 PF13789 BF28_2948 BF28_2949 PF00485 Phosphoribulokinase / Uridine kinase family BF28_295 PF01515 Phosphate acetyl/butaryl transferase BF28_2950 PF04229 GrpB protein BF28_2951 PF00106 short chain dehydrogenase BF28_2952 PF12867 DinB superfamily BF28_2953 PF00676 Dehydrogenase E1 component BF28_2954 PF02779 Transketolase, pyrimidine binding domain BF28_2954 PF02780 Transketolase, C-terminal domain BF28_2955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_2955 PF00364 Biotin-requiring enzyme BF28_2955 PF02817 e3 binding domain BF28_2956 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_2956 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_2958 PF13315 BF28_2958 BF28_296 PF03099 Biotin/lipoate A/B protein ligase family BF28_2960 PF00455 BF28_2960 BF28_2960 PF08220 DeoR-like helix-turn-helix domain BF28_2961 PF00583 Acetyltransferase (GNAT) family BF28_2962 PF07978 NIPSNAP BF28_2964 PF00158 Sigma-54 interaction domain BF28_2964 PF01590 GAF domain BF28_2964 PF02954 Bacterial regulatory protein, Fis family BF28_2965 PF13122 BF28_2965 BF28_2966 PF13129 BF28_2966 BF28_2967 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF28_2968 PF00797 N-acetyltransferase BF28_2969 PF00293 NUDIX domain BF28_297 PF17294 BF28_297 BF28_2970 PF00440 Bacterial regulatory proteins, tetR family BF28_2971 PF00266 Aminotransferase class-V BF28_2972 PF04199 Putative cyclase BF28_2973 PF03301 Tryptophan 2,3-dioxygenase BF28_2974 PF00144 Beta-lactamase BF28_2975 PF13028 Protein of unknown function (DUF3889) BF28_2976 PF01471 Putative peptidoglycan binding domain BF28_2976 PF07486 Cell Wall Hydrolase BF28_2977 PF14620 BF28_2977 BF28_2978 PF09580 BF28_2978 BF28_2980 PF00583 Acetyltransferase (GNAT) family BF28_2981 PF06081 BF28_2981 BF28_2982 PF08002 Protein of unknown function (DUF1697) BF28_2986 PF00561 alpha/beta hydrolase fold BF28_2987 PF00155 Aminotransferase class I and II BF28_2987 PF00392 Bacterial regulatory proteins, gntR family BF28_2988 PF00892 EamA-like transporter family BF28_2989 PF11638 DnaA N-terminal domain BF28_299 PF07293 BF28_299 BF28_2990 PF00344 SecY translocase BF28_2991 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_2993 PF06445 GyrI-like small molecule binding domain BF28_2994 PF04542 Sigma-70 region 2 BF28_2994 PF08281 Sigma-70, region 4 BF28_2995 PF13490 Putative zinc-finger BF28_2995 PF13786 Domain of unknown function (DUF4179) BF28_2996 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_2996 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_2996 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_2997 PF00128 Alpha amylase, catalytic domain BF28_2997 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF28_2997 PF03714 Bacterial pullanase-associated domain BF28_2998 PF01569 PAP2 superfamily BF28_3 PF02595 Glycerate kinase family BF28_30 PF01196 Ribosomal protein L17 BF28_300 PF01032 FecCD transport family BF28_3001 PF08921 Domain of unknown function (DUF1904) BF28_3002 PF12867 DinB superfamily BF28_3003 PF13419 Haloacid dehalogenase-like hydrolase BF28_3005 PF08877 MepB protein BF28_3006 PF00797 N-acetyltransferase BF28_3007 PF13376 BF28_3007 BF28_3008 PF01266 FAD dependent oxidoreductase BF28_3009 PF00293 NUDIX domain BF28_301 PF01032 FecCD transport family BF28_3013 PF07995 Glucose / Sorbosone dehydrogenase BF28_3015 PF00583 Acetyltransferase (GNAT) family BF28_3016 PF01541 GIY-YIG catalytic domain BF28_3018 PF02673 BF28_3018 BF28_3019 PF12831 FAD dependent oxidoreductase BF28_302 PF00005 ABC transporter BF28_3020 PF13302 Acetyltransferase (GNAT) domain BF28_3021 PF12867 DinB superfamily BF28_3022 PF13673 Acetyltransferase (GNAT) domain BF28_3023 PF08000 Bacterial PH domain BF28_3024 PF01734 Patatin-like phospholipase BF28_3025 PF14176 BF28_3025 BF28_3027 PF00756 Putative esterase BF28_3027 PF09350 BF28_3027 BF28_3028 PF09234 Domain of unknown function (DUF1963) BF28_3029 PF01042 Endoribonuclease L-PSP BF28_303 PF01497 Periplasmic binding protein BF28_3030 PF00561 alpha/beta hydrolase fold BF28_3031 PF00293 NUDIX domain BF28_3032 PF00712 DNA polymerase III beta subunit, N-terminal domain BF28_3032 PF02767 DNA polymerase III beta subunit, central domain BF28_3032 PF02768 DNA polymerase III beta subunit, C-terminal domain BF28_3033 PF00293 NUDIX domain BF28_3034 PF07690 Major Facilitator Superfamily BF28_3036 PF00144 Beta-lactamase BF28_3037 PF00144 Beta-lactamase BF28_3039 PF00293 NUDIX domain BF28_304 PF01966 HD domain BF28_3040 PF03091 CutA1 divalent ion tolerance protein BF28_3041 PF00583 Acetyltransferase (GNAT) family BF28_3042 PF01270 Glycosyl hydrolases family 8 BF28_3043 PF00892 EamA-like transporter family BF28_3044 PF00155 Aminotransferase class I and II BF28_3044 PF00392 Bacterial regulatory proteins, gntR family BF28_3045 PF14091 BF28_3045 BF28_3048 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_3049 PF13673 Acetyltransferase (GNAT) domain BF28_305 PF01361 Tautomerase enzyme BF28_3052 PF05977 Transmembrane secretion effector BF28_3053 PF13411 MerR HTH family regulatory protein BF28_3053 PF13847 Methyltransferase domain BF28_3054 PF00293 NUDIX domain BF28_3055 PF00144 Beta-lactamase BF28_3056 PF05569 BlaR1 peptidase M56 BF28_3057 PF03965 Penicillinase repressor BF28_3059 PF12730 BF28_3059 BF28_306 PF02163 Peptidase family M50 BF28_3060 PF12730 BF28_3060 BF28_3061 PF00005 ABC transporter BF28_3061 PF13732 BF28_3061 BF28_3062 PF01965 DJ-1/PfpI family BF28_3063 PF08279 HTH domain BF28_3063 PF13280 BF28_3063 BF28_3064 PF00239 Resolvase, N terminal domain BF28_3064 PF02796 Helix-turn-helix domain of resolvase BF28_3065 PF01965 DJ-1/PfpI family BF28_3066 PF02645 Uncharacterised protein, DegV family COG1307 BF28_3067 PF11385 BF28_3067 BF28_3068 PF04892 BF28_3068 BF28_3069 PF00583 Acetyltransferase (GNAT) family BF28_307 PF08741 BF28_307 BF28_3070 PF00144 Beta-lactamase BF28_3071 PF07690 Major Facilitator Superfamily BF28_3072 PF00905 Penicillin binding protein transpeptidase domain BF28_3072 PF03717 Penicillin-binding Protein dimerisation domain BF28_3072 PF03793 PASTA domain BF28_3073 PF01569 PAP2 superfamily BF28_3074 PF00107 Zinc-binding dehydrogenase BF28_3074 PF08240 Alcohol dehydrogenase GroES-like domain BF28_3075 PF04229 GrpB protein BF28_3076 PF00069 Protein kinase domain BF28_3077 PF00512 His Kinase A (phospho-acceptor) domain BF28_3077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3077 PF07694 5TMR of 5TMR-LYT BF28_3078 PF09680 BF28_3078 BF28_3079 PF02361 Cobalt transport protein BF28_308 PF00905 Penicillin binding protein transpeptidase domain BF28_308 PF00912 Transglycosylase BF28_3080 PF00005 ABC transporter BF28_3080 PF12558 BF28_3080 BF28_3081 PF07155 ECF-type riboflavin transporter, S component BF28_3082 PF01177 Asp/Glu/Hydantoin racemase BF28_3083 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF28_3084 PF00905 Penicillin binding protein transpeptidase domain BF28_3084 PF03717 Penicillin-binding Protein dimerisation domain BF28_3085 PF00512 His Kinase A (phospho-acceptor) domain BF28_3085 PF00989 PAS fold BF28_3085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3085 PF08448 PAS fold BF28_3086 PF08282 haloacid dehalogenase-like hydrolase BF28_3087 PF05995 Cysteine dioxygenase type I BF28_3088 PF00067 Cytochrome P450 BF28_3089 PF03551 Transcriptional regulator PadR-like family BF28_309 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_3090 PF07561 BF28_3090 BF28_3091 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_3092 PF07690 Major Facilitator Superfamily BF28_3093 PF00067 Cytochrome P450 BF28_3095 PF08874 BF28_3095 BF28_3095 PF12395 BF28_3095 BF28_31 PF01000 RNA polymerase Rpb3/RpoA insert domain BF28_31 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF28_31 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF28_310 PF13411 MerR HTH family regulatory protein BF28_3100 PF13105 BF28_3100 BF28_3101 PF13032 BF28_3101 BF28_3101 PF13111 BF28_3101 BF28_3103 PF04977 Septum formation initiator BF28_311 PF07690 Major Facilitator Superfamily BF28_3111 PF03070 TENA/THI-4/PQQC family BF28_3112 PF01820 D-ala D-ala ligase N-terminus BF28_3112 PF07478 D-ala D-ala ligase C-terminus BF28_3113 PF00155 Aminotransferase class I and II BF28_3113 PF00392 Bacterial regulatory proteins, gntR family BF28_3114 PF00742 Homoserine dehydrogenase BF28_3114 PF03447 Homoserine dehydrogenase, NAD binding domain BF28_3116 PF13053 BF28_3116 BF28_3117 PF17294 BF28_3117 BF28_3118 PF02687 BF28_3118 BF28_3119 PF00005 ABC transporter BF28_312 PF01564 Spermine/spermidine synthase BF28_312 PF17284 BF28_312 BF28_3120 PF11667 BF28_3120 BF28_3121 PF13302 Acetyltransferase (GNAT) domain BF28_3122 PF00005 ABC transporter BF28_3122 PF12848 ABC transporter BF28_3124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3125 PF00072 Response regulator receiver domain BF28_3125 PF00486 Transcriptional regulatory protein, C terminal BF28_3126 PF03069 Acetamidase/Formamidase family BF28_3127 PF07486 Cell Wall Hydrolase BF28_3128 PF01921 tRNA synthetases class I (K) BF28_3129 PF09963 BF28_3129 BF28_313 PF00491 Arginase family BF28_3130 PF08450 SMP-30/Gluconolaconase/LRE-like region BF28_3131 PF13649 Methyltransferase domain BF28_3132 PF02875 Mur ligase family, glutamate ligase domain BF28_3132 PF08245 Mur ligase middle domain BF28_3133 PF01225 Mur ligase family, catalytic domain BF28_3133 PF08245 Mur ligase middle domain BF28_3136 PF08241 Methyltransferase domain BF28_3137 PF04239 Protein of unknown function (DUF421) BF28_3138 PF08240 Alcohol dehydrogenase GroES-like domain BF28_314 PF13303 BF28_314 BF28_3141 PF00155 Aminotransferase class I and II BF28_3141 PF00392 Bacterial regulatory proteins, gntR family BF28_3142 PF13222 BF28_3142 BF28_3143 PF01432 Peptidase family M3 BF28_3144 PF12833 Helix-turn-helix domain BF28_315 PF06486 Protein of unknown function (DUF1093) BF28_3150 PF13649 Methyltransferase domain BF28_3151 PF07690 Major Facilitator Superfamily BF28_3152 PF06445 GyrI-like small molecule binding domain BF28_3152 PF13411 MerR HTH family regulatory protein BF28_3153 PF00144 Beta-lactamase BF28_3155 PF03551 Transcriptional regulator PadR-like family BF28_3156 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF28_3159 PF00746 BF28_3159 BF28_3159 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_3159 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_3159 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_3159 PF16403 BF28_3159 BF28_316 PF02016 LD-carboxypeptidase BF28_3162 PF00583 Acetyltransferase (GNAT) family BF28_3162 PF13673 Acetyltransferase (GNAT) domain BF28_3163 PF13460 NADH(P)-binding BF28_3164 PF01048 Phosphorylase superfamily BF28_3165 PF01966 HD domain BF28_3166 PF00072 Response regulator receiver domain BF28_3166 PF00486 Transcriptional regulatory protein, C terminal BF28_3167 PF00512 His Kinase A (phospho-acceptor) domain BF28_3167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3168 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_3169 PF05163 DinB family BF28_317 PF09148 Domain of unknown function (DUF1934) BF28_3170 PF12146 Putative lysophospholipase BF28_3172 PF13302 Acetyltransferase (GNAT) domain BF28_3176 PF00501 AMP-binding enzyme BF28_3176 PF13193 AMP-binding enzyme C-terminal domain BF28_3176 PF16177 BF28_3176 BF28_3177 PF01039 Carboxyl transferase domain BF28_3178 PF00378 Enoyl-CoA hydratase/isomerase family BF28_3179 PF00682 HMGL-like BF28_318 PF00750 tRNA synthetases class I (R) BF28_318 PF03485 Arginyl tRNA synthetase N terminal domain BF28_318 PF05746 DALR anticodon binding domain BF28_3180 PF00364 Biotin-requiring enzyme BF28_3181 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BF28_3181 PF02785 Biotin carboxylase C-terminal domain BF28_3181 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF28_3182 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_3182 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_3182 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_3183 PF04463 BF28_3183 BF28_3183 PF08349 BF28_3183 BF28_3185 PF00440 Bacterial regulatory proteins, tetR family BF28_3186 PF12698 ABC-2 family transporter protein BF28_3187 PF00005 ABC transporter BF28_319 PF04542 Sigma-70 region 2 BF28_319 PF08281 Sigma-70, region 4 BF28_3190 PF00581 Rhodanese-like domain BF28_3190 PF00753 Metallo-beta-lactamase superfamily BF28_3191 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_3193 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_3193 PF00672 HAMP domain BF28_3193 PF02743 Cache domain BF28_3194 PF00563 EAL domain BF28_3194 PF00990 GGDEF domain BF28_3194 PF13426 PAS domain BF28_3195 PF00005 ABC transporter BF28_3196 PF00440 Bacterial regulatory proteins, tetR family BF28_3197 PF07968 Leukocidin/Hemolysin toxin family BF28_3198 PF00395 S-layer homology domain BF28_3198 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_3199 PF11518 Protein of unknown function (DUF3221) BF28_32 PF00411 Ribosomal protein S11 BF28_3200 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_3202 PF01385 BF28_3202 BF28_3202 PF07282 BF28_3202 BF28_3202 PF12323 BF28_3202 BF28_3203 PF01381 Helix-turn-helix BF28_3206 PF00149 Calcineurin-like phosphoesterase BF28_3206 PF02872 5'-nucleotidase, C-terminal domain BF28_3207 PF12867 DinB superfamily BF28_3208 PF12867 DinB superfamily BF28_3210 PF04962 KduI/IolB family BF28_3211 PF01116 Fructose-bisphosphate aldolase class-II BF28_3212 PF01261 Xylose isomerase-like TIM barrel BF28_3213 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3213 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3213 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3214 PF00171 Aldehyde dehydrogenase family BF28_3215 PF00294 pfkB family carbohydrate kinase BF28_3216 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_3216 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_3217 PF07690 Major Facilitator Superfamily BF28_3218 PF00356 Bacterial regulatory proteins, lacI family BF28_3218 PF13377 Periplasmic binding protein-like domain BF28_3219 PF01569 PAP2 superfamily BF28_3220 PF13354 Beta-lactamase enzyme family BF28_3221 PF00905 Penicillin binding protein transpeptidase domain BF28_3221 PF03717 Penicillin-binding Protein dimerisation domain BF28_3222 PF00905 Penicillin binding protein transpeptidase domain BF28_3222 PF03717 Penicillin-binding Protein dimerisation domain BF28_3224 PF04542 Sigma-70 region 2 BF28_3224 PF08281 Sigma-70, region 4 BF28_3225 PF13472 GDSL-like Lipase/Acylhydrolase family BF28_3226 PF16723 BF28_3226 BF28_3228 PF01546 Peptidase family M20/M25/M40 BF28_3228 PF07687 Peptidase dimerisation domain BF28_323 PF02225 PA domain BF28_323 PF04389 Peptidase family M28 BF28_3233 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BF28_3234 PF00300 Histidine phosphatase superfamily (branch 1) BF28_3235 PF12802 MarR family BF28_3236 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3236 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3236 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3238 PF06983 3-demethylubiquinone-9 3-methyltransferase BF28_3239 PF13649 Methyltransferase domain BF28_324 PF05737 Collagen binding domain BF28_3240 PF00005 ABC transporter BF28_3241 PF02687 BF28_3241 BF28_3242 PF07690 Major Facilitator Superfamily BF28_3243 PF00440 Bacterial regulatory proteins, tetR family BF28_3245 PF00270 DEAD/DEAH box helicase BF28_3245 PF00271 Helicase conserved C-terminal domain BF28_3247 PF00753 Metallo-beta-lactamase superfamily BF28_3249 PF06803 BF28_3249 BF28_325 PF00557 Metallopeptidase family M24 BF28_3250 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3251 PF00266 Aminotransferase class-V BF28_3251 PF13444 Acetyltransferase (GNAT) domain BF28_3252 PF02660 BF28_3252 BF28_3253 PF01869 BadF/BadG/BcrA/BcrD ATPase family BF28_3254 PF03702 Uncharacterised protein family (UPF0075) BF28_3256 PF02378 Phosphotransferase system, EIIC BF28_3257 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_3258 PF02638 BF28_3258 BF28_3259 PF13120 BF28_3259 BF28_326 PF00005 ABC transporter BF28_3260 PF05816 BF28_3260 BF28_3261 PF01596 O-methyltransferase BF28_3263 PF04542 Sigma-70 region 2 BF28_3263 PF08281 Sigma-70, region 4 BF28_3264 PF01593 Flavin containing amine oxidoreductase BF28_3266 PF02824 TGS domain BF28_3266 PF13328 HD domain BF28_3267 PF00190 Cupin BF28_3269 PF01391 Collagen triple helix repeat (20 copies) BF28_327 PF12698 ABC-2 family transporter protein BF28_3270 PF13799 BF28_3270 BF28_3271 PF01391 Collagen triple helix repeat (20 copies) BF28_3271 PF13799 BF28_3271 BF28_3273 PF01381 Helix-turn-helix BF28_3273 PF07883 Cupin domain BF28_3274 PF01810 BF28_3274 BF28_3275 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_3275 PF12123 N-acetylmuramoyl-l-alanine amidase BF28_3277 PF00005 ABC transporter BF28_3277 PF00664 ABC transporter transmembrane region BF28_3278 PF00005 ABC transporter BF28_3278 PF00664 ABC transporter transmembrane region BF28_3279 PF07081 Protein of unknown function (DUF1349) BF28_328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_328 PF07730 Histidine kinase BF28_3280 PF13527 Acetyltransferase (GNAT) domain BF28_3281 PF03473 MOSC domain BF28_3281 PF03475 3-alpha domain BF28_3282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3282 PF03466 LysR substrate binding domain BF28_3284 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase BF28_3285 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF28_3285 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF28_3286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3286 PF03466 LysR substrate binding domain BF28_3287 PF07690 Major Facilitator Superfamily BF28_3288 PF01047 MarR family BF28_329 PF00072 Response regulator receiver domain BF28_329 PF00196 Bacterial regulatory proteins, luxR family BF28_3290 PF00491 Arginase family BF28_3291 PF13238 AAA domain BF28_3292 PF02517 CAAX protease self-immunity BF28_3293 PF00313 'Cold-shock' DNA-binding domain BF28_3294 PF14169 BF28_3294 BF28_3295 PF13302 Acetyltransferase (GNAT) domain BF28_3299 PF01593 Flavin containing amine oxidoreductase BF28_33 PF00416 Ribosomal protein S13/S18 BF28_330 PF01381 Helix-turn-helix BF28_330 PF13424 Tetratricopeptide repeat BF28_3300 PF00561 alpha/beta hydrolase fold BF28_3301 PF09388 Spo0E like sporulation regulatory protein BF28_3303 PF01381 Helix-turn-helix BF28_3303 PF07883 Cupin domain BF28_3304 PF00892 EamA-like transporter family BF28_3305 PF00583 Acetyltransferase (GNAT) family BF28_3306 PF13508 Acetyltransferase (GNAT) domain BF28_3306 PF13599 Pentapeptide repeats (9 copies) BF28_3307 PF00583 Acetyltransferase (GNAT) family BF28_3308 PF00302 Chloramphenicol acetyltransferase BF28_3309 PF13213 BF28_3309 BF28_331 PF05968 BF28_331 BF28_3310 PF03176 MMPL family BF28_3311 PF00440 Bacterial regulatory proteins, tetR family BF28_3312 PF00753 Metallo-beta-lactamase superfamily BF28_3313 PF13673 Acetyltransferase (GNAT) domain BF28_3314 PF14470 Bacterial PH domain BF28_3316 PF10386 Protein of unknown function (DUF2441) BF28_3317 PF01156 Inosine-uridine preferring nucleoside hydrolase BF28_3318 PF00753 Metallo-beta-lactamase superfamily BF28_3319 PF13649 Methyltransferase domain BF28_332 PF00563 EAL domain BF28_332 PF00989 PAS fold BF28_332 PF00990 GGDEF domain BF28_332 PF13321 BF28_332 BF28_3320 PF02535 BF28_3320 BF28_3321 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3321 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3321 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3322 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3323 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3324 PF07690 Major Facilitator Superfamily BF28_3325 PF00561 alpha/beta hydrolase fold BF28_3326 PF02687 BF28_3326 BF28_3327 PF00005 ABC transporter BF28_3328 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_3328 PF02824 TGS domain BF28_3328 PF03129 Anticodon binding domain BF28_3328 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_3329 PF00849 RNA pseudouridylate synthase BF28_3329 PF01479 S4 domain BF28_333 PF03851 UV-endonuclease UvdE BF28_3330 PF16291 BF28_3330 BF28_3333 PF01235 BF28_3333 BF28_3334 PF00082 Subtilase family BF28_3335 PF05163 DinB family BF28_3336 PF13030 BF28_3336 BF28_3337 PF00216 Bacterial DNA-binding protein BF28_3339 PF01648 4'-phosphopantetheinyl transferase superfamily BF28_334 PF13091 PLD-like domain BF28_3340 PF07690 Major Facilitator Superfamily BF28_3341 PF03621 MbtH-like protein BF28_3342 PF00501 AMP-binding enzyme BF28_3342 PF00550 Phosphopantetheine attachment site BF28_3342 PF00668 Condensation domain BF28_3342 PF00975 Thioesterase domain BF28_3342 PF13193 AMP-binding enzyme C-terminal domain BF28_3343 PF00550 Phosphopantetheine attachment site BF28_3343 PF00857 Isochorismatase family BF28_3344 PF00501 AMP-binding enzyme BF28_3344 PF13193 AMP-binding enzyme C-terminal domain BF28_3345 PF00425 chorismate binding enzyme BF28_3346 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_3347 PF07690 Major Facilitator Superfamily BF28_3349 PF09953 BF28_3349 BF28_335 PF02754 BF28_335 BF28_335 PF13183 4Fe-4S dicluster domain BF28_3350 PF01022 Bacterial regulatory protein, arsR family BF28_3351 PF13476 AAA domain BF28_3351 PF13558 Putative exonuclease SbcCD, C subunit BF28_3352 PF00149 Calcineurin-like phosphoesterase BF28_3352 PF12320 Type 5 capsule protein repressor C-terminal domain BF28_3353 PF10763 Protein of unknown function (DUF2584) BF28_3355 PF16113 BF28_3355 BF28_3356 PF01810 BF28_3356 BF28_3357 PF00171 Aldehyde dehydrogenase family BF28_3358 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_3358 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF28_3359 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_3359 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_3359 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_336 PF00108 Thiolase, N-terminal domain BF28_336 PF02803 Thiolase, C-terminal domain BF28_3360 PF13714 Phosphoenolpyruvate phosphomutase BF28_3361 PF03972 MmgE/PrpD family BF28_3362 PF00285 Citrate synthase BF28_3363 PF01521 Iron-sulphur cluster biosynthesis BF28_3364 PF07690 Major Facilitator Superfamily BF28_3365 PF00905 Penicillin binding protein transpeptidase domain BF28_3365 PF00912 Transglycosylase BF28_3366 PF13619 BF28_3366 BF28_3367 PF01679 BF28_3367 BF28_3369 PF10676 BF28_3369 BF28_337 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF28_337 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF28_3370 PF08863 BF28_3370 BF28_3373 PF13616 PPIC-type PPIASE domain BF28_3378 PF00386 C1q domain BF28_338 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_338 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_338 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_3380 PF13135 BF28_3380 BF28_3381 PF07452 BF28_3381 BF28_3382 PF13104 BF28_3382 BF28_3388 PF00085 Thioredoxin BF28_3389 PF01569 PAP2 superfamily BF28_339 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_339 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_339 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_3390 PF01545 Cation efflux family BF28_3390 PF16916 BF28_3390 BF28_3391 PF07070 BF28_3391 BF28_3392 PF00069 Protein kinase domain BF28_3392 PF12330 Domain of unknown function (DUF3635) BF28_3394 PF14162 BF28_3394 BF28_3395 PF13067 BF28_3395 BF28_3397 PF06855 Protein of unknown function (DUF1250) BF28_3398 PF14122 BF28_3398 BF28_3399 PF12544 Lysine-2,3-aminomutase BF28_3399 PF13353 4Fe-4S single cluster domain BF28_34 PF00444 Ribosomal protein L36 BF28_340 PF00440 Bacterial regulatory proteins, tetR family BF28_3400 PF00158 Sigma-54 interaction domain BF28_3400 PF02954 Bacterial regulatory protein, Fis family BF28_3400 PF08448 PAS fold BF28_3401 PF13527 Acetyltransferase (GNAT) domain BF28_3402 PF01546 Peptidase family M20/M25/M40 BF28_3402 PF07687 Peptidase dimerisation domain BF28_3403 PF01144 Coenzyme A transferase BF28_3404 PF01144 Coenzyme A transferase BF28_3405 PF00202 Aminotransferase class-III BF28_3407 PF14344 BF28_3407 BF28_3408 PF00512 His Kinase A (phospho-acceptor) domain BF28_3408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3408 PF09385 Histidine kinase N terminal BF28_3409 PF07997 Protein of unknown function (DUF1694) BF28_341 PF05066 HB1, ASXL, restriction endonuclease HTH domain BF28_3410 PF00171 Aldehyde dehydrogenase family BF28_3411 PF00571 CBS domain BF28_3411 PF01595 BF28_3411 BF28_3411 PF03471 Transporter associated domain BF28_3415 PF07728 AAA domain (dynein-related subfamily) BF28_3417 PF13520 Amino acid permease BF28_3418 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3418 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF28_3419 PF00005 ABC transporter BF28_342 PF00117 Glutamine amidotransferase class-I BF28_342 PF06418 CTP synthase N-terminus BF28_3420 PF02698 DUF218 domain BF28_3421 PF07690 Major Facilitator Superfamily BF28_3422 PF03358 NADPH-dependent FMN reductase BF28_3424 PF00535 Glycosyl transferase family 2 BF28_3425 PF10924 BF28_3425 BF28_3426 PF05139 Erythromycin esterase BF28_3427 PF00144 Beta-lactamase BF28_3428 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3429 PF00528 Binding-protein-dependent transport system inner membrane component BF28_343 PF10740 Protein of unknown function (DUF2529) BF28_3430 PF00107 Zinc-binding dehydrogenase BF28_3430 PF08240 Alcohol dehydrogenase GroES-like domain BF28_3431 PF01380 SIS domain BF28_3432 PF00072 Response regulator receiver domain BF28_3432 PF00196 Bacterial regulatory proteins, luxR family BF28_3433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3433 PF07730 Histidine kinase BF28_3433 PF13185 GAF domain BF28_3434 PF00924 Mechanosensitive ion channel BF28_3435 PF00011 Hsp20/alpha crystallin family BF28_3436 PF00293 NUDIX domain BF28_3437 PF00857 Isochorismatase family BF28_344 PF00072 Response regulator receiver domain BF28_3440 PF00881 Nitroreductase family BF28_3441 PF01063 Aminotransferase class IV BF28_3442 PF01497 Periplasmic binding protein BF28_3445 PF13673 Acetyltransferase (GNAT) domain BF28_3446 PF00733 Asparagine synthase BF28_3446 PF13537 Glutamine amidotransferase domain BF28_3447 PF00011 Hsp20/alpha crystallin family BF28_3448 PF02630 SCO1/SenC BF28_3449 PF12706 Beta-lactamase superfamily domain BF28_345 PF01116 Fructose-bisphosphate aldolase class-II BF28_3450 PF02645 Uncharacterised protein, DegV family COG1307 BF28_3451 PF10751 BF28_3451 BF28_3452 PF00902 Sec-independent protein translocase protein (TatC) BF28_3453 PF02416 mttA/Hcf106 family BF28_3454 PF03006 BF28_3454 BF28_3455 PF01553 Acyltransferase BF28_3456 PF02525 Flavodoxin-like fold BF28_3457 PF00905 Penicillin binding protein transpeptidase domain BF28_3457 PF03717 Penicillin-binding Protein dimerisation domain BF28_3457 PF05223 NTF2-like N-terminal transpeptidase domain BF28_3458 PF00186 Dihydrofolate reductase BF28_3459 PF00303 Thymidylate synthase BF28_346 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF28_3460 PF05592 Bacterial alpha-L-rhamnosidase BF28_3460 PF08531 Alpha-L-rhamnosidase N-terminal domain BF28_3460 PF17389 BF28_3460 BF28_3460 PF17390 BF28_3460 BF28_3461 PF00144 Beta-lactamase BF28_3461 PF11954 BF28_3461 BF28_3462 PF03572 Peptidase family S41 BF28_3463 PF01636 Phosphotransferase enzyme family BF28_3464 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3465 PF13419 Haloacid dehalogenase-like hydrolase BF28_3466 PF14005 BF28_3466 BF28_3467 PF05975 BF28_3467 BF28_3468 PF00005 ABC transporter BF28_3469 PF00583 Acetyltransferase (GNAT) family BF28_347 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF28_3470 PF13242 HAD-hyrolase-like BF28_3471 PF00583 Acetyltransferase (GNAT) family BF28_3472 PF01980 Uncharacterised protein family UPF0066 BF28_3473 PF01177 Asp/Glu/Hydantoin racemase BF28_3474 PF00465 Iron-containing alcohol dehydrogenase BF28_3475 PF02447 BF28_3475 BF28_3476 PF13419 Haloacid dehalogenase-like hydrolase BF28_3477 PF10997 BF28_3477 BF28_3478 PF06042 Bacterial protein of unknown function (DUF925) BF28_3479 PF00561 alpha/beta hydrolase fold BF28_348 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_348 PF07497 Rho termination factor, RNA-binding domain BF28_348 PF07498 Rho termination factor, N-terminal domain BF28_3480 PF00209 Sodium:neurotransmitter symporter family BF28_3481 PF04634 Protein of unknown function, DUF600 BF28_3482 PF13930 DNA/RNA non-specific endonuclease BF28_3483 PF01548 BF28_3483 BF28_3483 PF02371 BF28_3483 BF28_3484 PF00239 Resolvase, N terminal domain BF28_3484 PF07508 Recombinase BF28_3485 PF15573 BF28_3485 BF28_3489 PF06161 BF28_3489 BF28_349 PF01197 Ribosomal protein L31 BF28_3491 PF00069 Protein kinase domain BF28_3491 PF13432 Tetratricopeptide repeat BF28_3491 PF14559 Tetratricopeptide repeat BF28_3492 PF06013 Proteins of 100 residues with WXG BF28_3493 PF01580 FtsK/SpoIIIE family BF28_3496 PF13519 von Willebrand factor type A domain BF28_3497 PF00152 tRNA synthetases class II (D, K and N) BF28_3497 PF01336 OB-fold nucleic acid binding domain BF28_3498 PF02875 Mur ligase family, glutamate ligase domain BF28_3498 PF08245 Mur ligase middle domain BF28_35 PF01176 Translation initiation factor 1A / IF-1 BF28_350 PF00265 Thymidine kinase BF28_3500 PF02128 Fungalysin metallopeptidase (M36) BF28_3500 PF03413 Peptidase propeptide and YPEB domain BF28_3500 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_3501 PF00133 tRNA synthetases class I (I, L, M and V) BF28_3501 PF08264 Anticodon-binding domain of tRNA BF28_3502 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) BF28_3502 PF13181 Tetratricopeptide repeat BF28_3502 PF13432 Tetratricopeptide repeat BF28_3502 PF13529 Peptidase_C39 like family BF28_3503 PF13847 Methyltransferase domain BF28_3504 PF00750 tRNA synthetases class I (R) BF28_3504 PF03485 Arginyl tRNA synthetase N terminal domain BF28_3504 PF05746 DALR anticodon binding domain BF28_3505 PF04445 Putative SAM-dependent methyltransferase BF28_3506 PF06491 Disulphide isomerase BF28_3507 PF04134 BF28_3507 BF28_3508 PF08712 Scaffold protein Nfu/NifU N terminal BF28_3508 PF13646 HEAT repeats BF28_3508 PF13769 BF28_3508 BF28_3509 PF01494 FAD binding domain BF28_351 PF00472 RF-1 domain BF28_351 PF03462 PCRF domain BF28_3510 PF00440 Bacterial regulatory proteins, tetR family BF28_3511 PF00436 Single-strand binding protein family BF28_3512 PF14201 BF28_3512 BF28_3513 PF12811 BF28_3513 BF28_3514 PF00005 ABC transporter BF28_3514 PF12848 ABC transporter BF28_3514 PF16326 BF28_3514 BF28_3515 PF01966 HD domain BF28_3517 PF09346 SMI1 / KNR4 family (SUKH-1) BF28_3518 PF01764 Lipase (class 3) BF28_352 PF13847 Methyltransferase domain BF28_3520 PF13128 BF28_3520 BF28_3522 PF04232 Stage V sporulation protein S (SpoVS) BF28_3524 PF00797 N-acetyltransferase BF28_3527 PF05901 BF28_3527 BF28_3529 PF01814 Hemerythrin HHE cation binding domain BF28_3529 PF04405 BF28_3529 BF28_353 PF09551 BF28_353 BF28_3530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF28_3530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF28_3530 PF04324 BFD-like [2Fe-2S] binding domain BF28_3530 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_3531 PF13806 Rieske-like [2Fe-2S] domain BF28_3532 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_3533 PF01903 CbiX BF28_3534 PF13241 Putative NAD(P)-binding BF28_3536 PF03547 BF28_3536 BF28_3537 PF07690 Major Facilitator Superfamily BF28_3538 PF02597 ThiS family BF28_3539 PF02391 MoaE protein BF28_3540 PF00994 Probable molybdopterin binding domain BF28_3540 PF03453 MoeA N-terminal region (domain I and II) BF28_3540 PF03454 MoeA C-terminal region (domain IV) BF28_3541 PF00899 ThiF family BF28_3542 PF04055 Radical SAM superfamily BF28_3542 PF06463 Molybdenum Cofactor Synthesis C BF28_3542 PF13353 4Fe-4S single cluster domain BF28_3543 PF00027 Cyclic nucleotide-binding domain BF28_3543 PF13545 Crp-like helix-turn-helix domain BF28_3544 PF02665 Nitrate reductase gamma subunit BF28_3545 PF02613 Nitrate reductase delta subunit BF28_3546 PF13247 4Fe-4S dicluster domain BF28_3546 PF14711 Respiratory nitrate reductase beta C-terminal BF28_3547 PF00384 Molybdopterin oxidoreductase BF28_3547 PF01568 Molydopterin dinucleotide binding domain BF28_3547 PF14710 Respiratory nitrate reductase alpha N-terminal BF28_355 PF01300 Telomere recombination BF28_355 PF03481 Putative GTP-binding controlling metal-binding BF28_3550 PF07726 ATPase family associated with various cellular activities (AAA) BF28_3551 PF01882 BF28_3551 BF28_3552 PF01841 Transglutaminase-like superfamily BF28_3552 PF13559 BF28_3552 BF28_3553 PF00255 Glutathione peroxidase BF28_3554 PF13063 BF28_3554 BF28_3555 PF00753 Metallo-beta-lactamase superfamily BF28_3557 PF12207 Domain of unknown function (DUF3600) BF28_3558 PF04542 Sigma-70 region 2 BF28_3558 PF08281 Sigma-70, region 4 BF28_3559 PF00107 Zinc-binding dehydrogenase BF28_3559 PF08240 Alcohol dehydrogenase GroES-like domain BF28_356 PF02659 BF28_356 BF28_3561 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3562 PF01261 Xylose isomerase-like TIM barrel BF28_3563 PF00270 DEAD/DEAH box helicase BF28_3563 PF00271 Helicase conserved C-terminal domain BF28_3565 PF01268 Formate--tetrahydrofolate ligase BF28_3566 PF08241 Methyltransferase domain BF28_3571 PF09579 BF28_3571 BF28_3576 PF13780 BF28_3576 BF28_358 PF13071 BF28_358 BF28_3581 PF01636 Phosphotransferase enzyme family BF28_3582 PF13673 Acetyltransferase (GNAT) domain BF28_3584 PF00583 Acetyltransferase (GNAT) family BF28_3585 PF13563 2'-5' RNA ligase superfamily BF28_3586 PF13302 Acetyltransferase (GNAT) domain BF28_3587 PF07853 BF28_3587 BF28_3588 PF00149 Calcineurin-like phosphoesterase BF28_3589 PF00583 Acetyltransferase (GNAT) family BF28_3590 PF00155 Aminotransferase class I and II BF28_3590 PF00392 Bacterial regulatory proteins, gntR family BF28_3591 PF02588 BF28_3591 BF28_3591 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_3592 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BF28_3594 PF00583 Acetyltransferase (GNAT) family BF28_3595 PF13649 Methyltransferase domain BF28_3596 PF00842 Alanine racemase, C-terminal domain BF28_3596 PF01168 Alanine racemase, N-terminal domain BF28_3598 PF08282 haloacid dehalogenase-like hydrolase BF28_3599 PF00300 Histidine phosphatase superfamily (branch 1) BF28_36 PF00557 Metallopeptidase family M24 BF28_360 PF01613 Flavin reductase like domain BF28_3600 PF01145 SPFH domain / Band 7 family BF28_3601 PF01957 NfeD-like C-terminal, partner-binding BF28_3602 PF07690 Major Facilitator Superfamily BF28_3603 PF01425 Amidase BF28_3604 PF00293 NUDIX domain BF28_3605 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_3606 PF13673 Acetyltransferase (GNAT) domain BF28_3607 PF07454 BF28_3607 BF28_3609 PF07609 BF28_3609 BF28_361 PF07681 BF28_361 BF28_3610 PF01588 Putative tRNA binding domain BF28_3611 PF05525 BF28_3611 BF28_3612 PF00571 CBS domain BF28_3614 PF00571 CBS domain BF28_3614 PF01595 BF28_3614 BF28_3614 PF03471 Transporter associated domain BF28_3615 PF04306 BF28_3615 BF28_3616 PF13460 NADH(P)-binding BF28_3618 PF07875 BF28_3618 BF28_3619 PF13091 PLD-like domain BF28_362 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF28_3620 PF03061 Thioesterase superfamily BF28_3621 PF09323 BF28_3621 BF28_3622 PF03773 BF28_3622 BF28_3623 PF01544 CorA-like Mg2+ transporter protein BF28_3624 PF01943 BF28_3624 BF28_3624 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_3625 PF09335 BF28_3625 BF28_3626 PF00293 NUDIX domain BF28_3626 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal BF28_3627 PF08757 BF28_3627 BF28_3629 PF00300 Histidine phosphatase superfamily (branch 1) BF28_363 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF28_3631 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3632 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_3633 PF10947 BF28_3633 BF28_3634 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF28_3634 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF28_3635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF28_3636 PF13460 NADH(P)-binding BF28_3638 PF01297 Periplasmic solute binding protein family BF28_364 PF02502 Ribose/Galactose Isomerase BF28_3641 PF12389 BF28_3641 BF28_3648 PF00583 Acetyltransferase (GNAT) family BF28_3649 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF28_3649 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF28_365 PF04260 Protein of unknown function (DUF436) BF28_3650 PF00248 Aldo/keto reductase family BF28_3651 PF13302 Acetyltransferase (GNAT) domain BF28_3652 PF01593 Flavin containing amine oxidoreductase BF28_3653 PF13035 BF28_3653 BF28_3654 PF00296 Luciferase-like monooxygenase BF28_3655 PF02230 Phospholipase/Carboxylesterase BF28_3656 PF13075 BF28_3656 BF28_3657 PF00210 Ferritin-like domain BF28_3658 PF03845 BF28_3658 BF28_3659 PF13141 BF28_3659 BF28_366 PF00464 Serine hydroxymethyltransferase BF28_3661 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_3661 PF00672 HAMP domain BF28_3661 PF02743 Cache domain BF28_3662 PF03193 Protein of unknown function, DUF258 BF28_3663 PF04978 Protein of unknown function (DUF664) BF28_3664 PF14074 BF28_3664 BF28_3666 PF07690 Major Facilitator Superfamily BF28_3667 PF00248 Aldo/keto reductase family BF28_3668 PF12840 Helix-turn-helix domain BF28_3669 PF00082 Subtilase family BF28_367 PF14681 Uracil phosphoribosyltransferase BF28_3670 PF04014 Antidote-toxin recognition MazE BF28_3671 PF02687 BF28_3671 BF28_3672 PF02540 NAD synthase BF28_3673 PF00293 NUDIX domain BF28_3674 PF13314 BF28_3674 BF28_3675 PF01841 Transglutaminase-like superfamily BF28_3676 PF09234 Domain of unknown function (DUF1963) BF28_3677 PF09680 BF28_3677 BF28_3678 PF01734 Patatin-like phospholipase BF28_3679 PF13069 BF28_3679 BF28_368 PF09527 BF28_368 BF28_3680 PF00155 Aminotransferase class I and II BF28_3680 PF00392 Bacterial regulatory proteins, gntR family BF28_3681 PF01810 BF28_3681 BF28_3682 PF07690 Major Facilitator Superfamily BF28_3683 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_3684 PF01261 Xylose isomerase-like TIM barrel BF28_3687 PF00501 AMP-binding enzyme BF28_3687 PF13193 AMP-binding enzyme C-terminal domain BF28_3688 PF04183 IucA / IucC family BF28_3688 PF06276 Ferric iron reductase FhuF-like transporter BF28_3689 PF04183 IucA / IucC family BF28_3689 PF06276 Ferric iron reductase FhuF-like transporter BF28_369 PF03899 BF28_369 BF28_3690 PF00583 Acetyltransferase (GNAT) family BF28_3691 PF02308 BF28_3691 BF28_3692 PF10368 Putative cell-wall binding lipoprotein BF28_3693 PF01522 Polysaccharide deacetylase BF28_3694 PF00512 His Kinase A (phospho-acceptor) domain BF28_3694 PF00672 HAMP domain BF28_3694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3695 PF00072 Response regulator receiver domain BF28_3695 PF00486 Transcriptional regulatory protein, C terminal BF28_3697 PF03816 Cell envelope-related transcriptional attenuator domain BF28_3698 PF11308 BF28_3698 BF28_37 PF00406 Adenylate kinase BF28_37 PF05191 Adenylate kinase, active site lid BF28_370 PF00119 ATP synthase A chain BF28_3700 PF00288 GHMP kinases N terminal domain BF28_3700 PF08544 GHMP kinases C terminal BF28_3701 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3702 PF00742 Homoserine dehydrogenase BF28_3702 PF03447 Homoserine dehydrogenase, NAD binding domain BF28_3703 PF01243 Pyridoxamine 5'-phosphate oxidase BF28_3704 PF00293 NUDIX domain BF28_3705 PF13630 BF28_3705 BF28_3706 PF01522 Polysaccharide deacetylase BF28_3707 PF04439 Streptomycin adenylyltransferase BF28_3708 PF01596 O-methyltransferase BF28_3709 PF00106 short chain dehydrogenase BF28_371 PF00137 ATP synthase subunit C BF28_3710 PF00512 His Kinase A (phospho-acceptor) domain BF28_3710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3711 PF11337 BF28_3711 BF28_3712 PF00072 Response regulator receiver domain BF28_3712 PF00486 Transcriptional regulatory protein, C terminal BF28_3713 PF00005 ABC transporter BF28_3713 PF00664 ABC transporter transmembrane region BF28_3714 PF00561 alpha/beta hydrolase fold BF28_3715 PF00877 NlpC/P60 family BF28_3715 PF08239 Bacterial SH3 domain BF28_3716 PF00881 Nitroreductase family BF28_3717 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_3718 PF02016 LD-carboxypeptidase BF28_372 PF00430 ATP synthase B/B' CF(0) BF28_3721 PF00005 ABC transporter BF28_3721 PF00664 ABC transporter transmembrane region BF28_3722 PF00005 ABC transporter BF28_3722 PF00664 ABC transporter transmembrane region BF28_3723 PF02322 BF28_3723 BF28_3724 PF01654 BF28_3724 BF28_3725 PF00296 Luciferase-like monooxygenase BF28_3726 PF01047 MarR family BF28_3727 PF02627 Carboxymuconolactone decarboxylase family BF28_3728 PF14552 Tautomerase enzyme BF28_3729 PF16157 BF28_3729 BF28_373 PF00213 ATP synthase delta (OSCP) subunit BF28_3730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3731 PF02653 BF28_3731 BF28_3732 PF02653 BF28_3732 BF28_3733 PF00005 ABC transporter BF28_3734 PF00005 ABC transporter BF28_3734 PF12399 Branched-chain amino acid ATP-binding cassette transporter BF28_3735 PF13458 Periplasmic binding protein BF28_3736 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_3736 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_3737 PF01575 MaoC like domain BF28_3738 PF00501 AMP-binding enzyme BF28_3738 PF13193 AMP-binding enzyme C-terminal domain BF28_3739 PF00440 Bacterial regulatory proteins, tetR family BF28_374 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_374 PF00306 ATP synthase alpha/beta chain, C terminal domain BF28_374 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF28_3740 PF00395 S-layer homology domain BF28_3741 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF28_3741 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF28_3742 PF01593 Flavin containing amine oxidoreductase BF28_3743 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_3743 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_3744 PF01594 BF28_3744 BF28_3745 PF01425 Amidase BF28_3747 PF00881 Nitroreductase family BF28_3748 PF01323 DSBA-like thioredoxin domain BF28_3749 PF02082 Transcriptional regulator BF28_375 PF00231 ATP synthase BF28_3750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3750 PF03466 LysR substrate binding domain BF28_3751 PF00892 EamA-like transporter family BF28_3752 PF00561 alpha/beta hydrolase fold BF28_3753 PF07987 Domain of unkown function (DUF1775) BF28_3754 PF04234 CopC domain BF28_3754 PF05425 BF28_3754 BF28_3754 PF13115 BF28_3754 BF28_3755 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3756 PF05525 BF28_3756 BF28_3757 PF02525 Flavodoxin-like fold BF28_3758 PF01758 Sodium Bile acid symporter family BF28_3759 PF13687 BF28_3759 BF28_376 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_376 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF28_3760 PF01131 DNA topoisomerase BF28_3760 PF01751 Toprim domain BF28_3760 PF13342 BF28_3760 BF28_3761 PF04014 Antidote-toxin recognition MazE BF28_3762 PF13349 BF28_3762 BF28_3763 PF12730 BF28_3763 BF28_3764 PF00005 ABC transporter BF28_3766 PF01648 4'-phosphopantetheinyl transferase superfamily BF28_3767 PF00005 ABC transporter BF28_3767 PF00664 ABC transporter transmembrane region BF28_3768 PF00501 AMP-binding enzyme BF28_3768 PF00550 Phosphopantetheine attachment site BF28_3768 PF00668 Condensation domain BF28_3768 PF13193 AMP-binding enzyme C-terminal domain BF28_3769 PF00501 AMP-binding enzyme BF28_3769 PF00550 Phosphopantetheine attachment site BF28_3769 PF00668 Condensation domain BF28_3769 PF13193 AMP-binding enzyme C-terminal domain BF28_377 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BF28_377 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF28_3770 PF00501 AMP-binding enzyme BF28_3770 PF00550 Phosphopantetheine attachment site BF28_3770 PF00668 Condensation domain BF28_3770 PF13193 AMP-binding enzyme C-terminal domain BF28_3772 PF00975 Thioesterase domain BF28_3773 PF00557 Metallopeptidase family M24 BF28_3773 PF05195 Aminopeptidase P, N-terminal domain BF28_3775 PF13386 BF28_3775 BF28_3776 PF04982 BF28_3776 BF28_3777 PF05979 Bacterial protein of unknown function (DUF896) BF28_3778 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_3779 PF00591 Glycosyl transferase family, a/b domain BF28_3779 PF02885 Glycosyl transferase family, helical bundle domain BF28_3779 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_378 PF06161 BF28_378 BF28_3780 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_3780 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_3781 PF01791 DeoC/LacD family aldolase BF28_3782 PF04198 Putative sugar-binding domain BF28_3782 PF04545 Sigma-70, region 4 BF28_3783 PF01810 BF28_3783 BF28_3784 PF05791 Bacillus haemolytic enterotoxin (HBL) BF28_3785 PF05791 Bacillus haemolytic enterotoxin (HBL) BF28_3786 PF05791 Bacillus haemolytic enterotoxin (HBL) BF28_3787 PF13520 Amino acid permease BF28_3789 PF02558 Ketopantoate reductase PanE/ApbA BF28_3789 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF28_379 PF06161 BF28_379 BF28_3791 PF00581 Rhodanese-like domain BF28_3791 PF12368 BF28_3791 BF28_3792 PF01566 BF28_3792 BF28_3793 PF00561 alpha/beta hydrolase fold BF28_3794 PF01551 Peptidase family M23 BF28_3795 PF00512 His Kinase A (phospho-acceptor) domain BF28_3795 PF00672 HAMP domain BF28_3795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3796 PF00072 Response regulator receiver domain BF28_3796 PF00486 Transcriptional regulatory protein, C terminal BF28_3797 PF13302 Acetyltransferase (GNAT) domain BF28_3798 PF04055 Radical SAM superfamily BF28_3798 PF13186 Iron-sulfur cluster-binding domain BF28_3798 PF13353 4Fe-4S single cluster domain BF28_3799 PF08242 Methyltransferase domain BF28_38 PF00344 SecY translocase BF28_380 PF00563 EAL domain BF28_380 PF00990 GGDEF domain BF28_380 PF13426 PAS domain BF28_3802 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_3803 PF12697 Alpha/beta hydrolase family BF28_3804 PF01979 Amidohydrolase family BF28_3806 PF13673 Acetyltransferase (GNAT) domain BF28_3807 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BF28_3807 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BF28_3808 PF04397 LytTr DNA-binding domain BF28_3809 PF12146 Putative lysophospholipase BF28_381 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BF28_3810 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BF28_3811 PF07690 Major Facilitator Superfamily BF28_3812 PF00583 Acetyltransferase (GNAT) family BF28_3813 PF04474 BF28_3813 BF28_3814 PF09587 Bacterial capsule synthesis protein PGA_cap BF28_3816 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3816 PF00585 C-terminal regulatory domain of Threonine dehydratase BF28_3817 PF00920 Dehydratase family BF28_3818 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF28_3818 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain BF28_3819 PF13710 ACT domain BF28_382 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BF28_3820 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_3820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_3820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_3821 PF01063 Aminotransferase class IV BF28_3822 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_3823 PF01625 Peptide methionine sulfoxide reductase BF28_3825 PF07299 Fibronectin-binding protein (FBP) BF28_3825 PF16571 BF28_3825 BF28_3826 PF04239 Protein of unknown function (DUF421) BF28_3828 PF01522 Polysaccharide deacetylase BF28_3829 PF00209 Sodium:neurotransmitter symporter family BF28_383 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BF28_3830 PF01943 BF28_3830 BF28_3830 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_3831 PF13228 BF28_3831 BF28_3832 PF13302 Acetyltransferase (GNAT) domain BF28_3833 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3834 PF07690 Major Facilitator Superfamily BF28_3835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_3836 PF01926 50S ribosome-binding GTPase BF28_3836 PF13167 BF28_3836 BF28_3836 PF16360 BF28_3836 BF28_3838 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_3838 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_3839 PF07690 Major Facilitator Superfamily BF28_384 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BF28_3840 PF07690 Major Facilitator Superfamily BF28_3841 PF03551 Transcriptional regulator PadR-like family BF28_3842 PF03976 Polyphosphate kinase 2 (PPK2) BF28_3843 PF00480 ROK family BF28_3844 PF00294 pfkB family carbohydrate kinase BF28_3845 PF01116 Fructose-bisphosphate aldolase class-II BF28_3846 PF01979 Amidohydrolase family BF28_3847 PF01380 SIS domain BF28_3848 PF00392 Bacterial regulatory proteins, gntR family BF28_3848 PF07702 UTRA domain BF28_3849 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_3849 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_385 PF00146 NADH dehydrogenase BF28_3850 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3851 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3852 PF01547 Bacterial extracellular solute-binding protein BF28_3853 PF13556 PucR C-terminal helix-turn-helix domain BF28_3854 PF00005 ABC transporter BF28_3854 PF08402 TOBE domain BF28_3857 PF07690 Major Facilitator Superfamily BF28_3858 PF00395 S-layer homology domain BF28_3858 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BF28_3859 PF00395 S-layer homology domain BF28_3859 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_386 PF12838 4Fe-4S dicluster domain BF28_3860 PF00293 NUDIX domain BF28_3861 PF14158 BF28_3861 BF28_3862 PF13761 BF28_3862 BF28_3863 PF13781 BF28_3863 BF28_3864 PF00696 Amino acid kinase family BF28_3864 PF01842 ACT domain BF28_3864 PF13840 ACT domain BF28_3865 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3866 PF01381 Helix-turn-helix BF28_3867 PF03590 Aspartate-ammonia ligase BF28_3868 PF13070 BF28_3868 BF28_3869 PF00176 SNF2 family N-terminal domain BF28_3869 PF00271 Helicase conserved C-terminal domain BF28_3869 PF04434 BF28_3869 BF28_3869 PF08455 BF28_3869 BF28_387 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BF28_3870 PF00072 Response regulator receiver domain BF28_3870 PF08664 BF28_3870 BF28_3871 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3872 PF00390 Malic enzyme, N-terminal domain BF28_3872 PF03949 Malic enzyme, NAD binding domain BF28_3873 PF00206 Lyase BF28_3873 PF10415 Fumarase C C-terminus BF28_3874 PF00375 Sodium:dicarboxylate symporter family BF28_3875 PF00696 Amino acid kinase family BF28_3876 PF13091 PLD-like domain BF28_3877 PF12698 ABC-2 family transporter protein BF28_3878 PF12698 ABC-2 family transporter protein BF28_3879 PF00005 ABC transporter BF28_3879 PF13732 BF28_3879 BF28_388 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BF28_3880 PF07730 Histidine kinase BF28_3881 PF00072 Response regulator receiver domain BF28_3881 PF00196 Bacterial regulatory proteins, luxR family BF28_3882 PF04542 Sigma-70 region 2 BF28_3882 PF08281 Sigma-70, region 4 BF28_3886 PF04286 BF28_3886 BF28_3887 PF00291 Pyridoxal-phosphate dependent enzyme BF28_3888 PF01381 Helix-turn-helix BF28_3888 PF07883 Cupin domain BF28_3889 PF01790 BF28_3889 BF28_389 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BF28_389 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BF28_3890 PF00578 AhpC/TSA family BF28_3891 PF02683 BF28_3891 BF28_3892 PF05569 BlaR1 peptidase M56 BF28_3893 PF03965 Penicillinase repressor BF28_3894 PF13078 BF28_3894 BF28_3895 PF03575 Peptidase family S51 BF28_3896 PF01554 MatE BF28_3897 PF09860 BF28_3897 BF28_3898 PF06713 BF28_3898 BF28_3899 PF00206 Lyase BF28_3899 PF10415 Fumarase C C-terminus BF28_39 PF00828 Ribosomal protein L18e/L15 BF28_390 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BF28_3900 PF03553 BF28_3900 BF28_3901 PF13578 Methyltransferase domain BF28_3902 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF28_3902 PF07683 Cobalamin synthesis protein cobW C-terminal domain BF28_3903 PF00892 EamA-like transporter family BF28_3904 PF00392 Bacterial regulatory proteins, gntR family BF28_3904 PF07729 FCD domain BF28_3905 PF13076 BF28_3905 BF28_3906 PF01545 Cation efflux family BF28_3908 PF13786 Domain of unknown function (DUF4179) BF28_3909 PF04542 Sigma-70 region 2 BF28_3909 PF08281 Sigma-70, region 4 BF28_391 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BF28_3910 PF00733 Asparagine synthase BF28_3910 PF13537 Glutamine amidotransferase domain BF28_3911 PF13672 Protein phosphatase 2C BF28_3912 PF01047 MarR family BF28_3914 PF00561 alpha/beta hydrolase fold BF28_3916 PF00300 Histidine phosphatase superfamily (branch 1) BF28_3917 PF13021 BF28_3917 BF28_3918 PF13354 Beta-lactamase enzyme family BF28_3919 PF00190 Cupin BF28_392 PF06612 BF28_392 BF28_3921 PF10787 BF28_3921 BF28_3923 PF07521 RNA-metabolising metallo-beta-lactamase BF28_3923 PF10996 Beta-Casp domain BF28_3923 PF12706 Beta-lactamase superfamily domain BF28_3924 PF00528 Binding-protein-dependent transport system inner membrane component BF28_3925 PF13343 Bacterial extracellular solute-binding protein BF28_3926 PF00005 ABC transporter BF28_3927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_3927 PF03466 LysR substrate binding domain BF28_3928 PF14346 Domain of unknown function (DUF4398) BF28_3929 PF07690 Major Facilitator Superfamily BF28_393 PF08680 Protein of unknown function (DUF1779) BF28_3930 PF12844 Helix-turn-helix domain BF28_3931 PF08141 BF28_3931 BF28_3932 PF03992 Antibiotic biosynthesis monooxygenase BF28_3933 PF01738 Dienelactone hydrolase family BF28_3935 PF17329 BF28_3935 BF28_3936 PF00440 Bacterial regulatory proteins, tetR family BF28_3937 PF13131 BF28_3937 BF28_3938 PF05437 BF28_3938 BF28_3939 PF03591 BF28_3939 BF28_394 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF28_3940 PF01978 Sugar-specific transcriptional regulator TrmB BF28_3940 PF11495 Archaeal transcriptional regulator TrmB BF28_3941 PF01411 tRNA synthetases class II (A) BF28_3941 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF28_3942 PF00460 Flagella basal body rod protein BF28_3942 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_3943 PF00448 SRP54-type protein, GTPase domain BF28_3944 PF00771 FHIPEP family BF28_3945 PF01312 FlhB HrpN YscU SpaS Family BF28_3946 PF01311 BF28_3946 BF28_3947 PF01313 BF28_3947 BF28_3948 PF00813 BF28_3948 BF28_395 PF08486 BF28_395 BF28_3950 PF01052 Surface presentation of antigens (SPOA) BF28_3951 PF01052 Surface presentation of antigens (SPOA) BF28_3951 PF02154 Flagellar motor switch protein FliM BF28_3952 PF01052 Surface presentation of antigens (SPOA) BF28_3953 PF01464 Transglycosylase SLT domain BF28_3954 PF00669 Bacterial flagellin N-terminal helical region BF28_3954 PF00700 Bacterial flagellin C-terminal helical region BF28_3955 PF00669 Bacterial flagellin N-terminal helical region BF28_3955 PF00700 Bacterial flagellin C-terminal helical region BF28_3956 PF12181 DNA binding domain of the motility gene repressor (MogR) BF28_3957 PF00072 Response regulator receiver domain BF28_3957 PF01584 CheW-like domain BF28_3959 PF13107 BF28_3959 BF28_396 PF00005 ABC transporter BF28_396 PF04397 LytTr DNA-binding domain BF28_3960 PF00460 Flagella basal body rod protein BF28_3960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_3961 PF03963 BF28_3961 BF28_3962 PF02120 Flagellar hook-length control protein FliK BF28_3964 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF28_3965 PF02108 BF28_3965 BF28_3966 PF01706 FliG C-terminal domain BF28_3966 PF14841 FliG middle domain BF28_3966 PF14842 FliG N-terminal domain BF28_3967 PF01514 Secretory protein of YscJ/FliF family BF28_3967 PF08345 BF28_3967 BF28_3968 PF02049 BF28_3968 BF28_3969 PF00460 Flagella basal body rod protein BF28_3969 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_397 PF00005 ABC transporter BF28_3970 PF00460 Flagella basal body rod protein BF28_3972 PF02561 Flagellar protein FliS BF28_3973 PF02465 BF28_3973 BF28_3973 PF07195 BF28_3973 BF28_3974 PF00669 Bacterial flagellin N-terminal helical region BF28_3974 PF00700 Bacterial flagellin C-terminal helical region BF28_3975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF28_3977 PF03885 Protein of unknown function (DUF327) BF28_3979 PF01739 CheR methyltransferase, SAM binding domain BF28_3979 PF03705 CheR methyltransferase, all-alpha domain BF28_398 PF12698 ABC-2 family transporter protein BF28_3982 PF01052 Surface presentation of antigens (SPOA) BF28_3982 PF04509 CheC-like family BF28_3983 PF01584 CheW-like domain BF28_3983 PF01627 Hpt domain BF28_3983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_3983 PF02895 Signal transducing histidine kinase, homodimeric domain BF28_3983 PF07194 P2 response regulator binding domain BF28_3984 PF00072 Response regulator receiver domain BF28_3985 PF00691 OmpA family BF28_3985 PF13677 BF28_3985 BF28_3986 PF01618 BF28_3986 BF28_3987 PF13023 HD domain BF28_3988 PF17209 BF28_3988 BF28_3989 PF09388 Spo0E like sporulation regulatory protein BF28_399 PF01551 Peptidase family M23 BF28_3990 PF09680 BF28_3990 BF28_3991 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_3992 PF05977 Transmembrane secretion effector BF28_3993 PF12840 Helix-turn-helix domain BF28_3994 PF07690 Major Facilitator Superfamily BF28_3995 PF01925 BF28_3995 BF28_3997 PF04542 Sigma-70 region 2 BF28_3997 PF08281 Sigma-70, region 4 BF28_3998 PF01965 DJ-1/PfpI family BF28_3999 PF00881 Nitroreductase family BF28_40 PF00327 Ribosomal protein L30p/L7e BF28_400 PF05050 Methyltransferase FkbM domain BF28_4000 PF09685 BF28_4000 BF28_4001 PF02698 DUF218 domain BF28_4002 PF04239 Protein of unknown function (DUF421) BF28_4003 PF01554 MatE BF28_4004 PF06445 GyrI-like small molecule binding domain BF28_4004 PF13411 MerR HTH family regulatory protein BF28_4005 PF00753 Metallo-beta-lactamase superfamily BF28_4005 PF07521 RNA-metabolising metallo-beta-lactamase BF28_4006 PF00999 Sodium/hydrogen exchanger family BF28_4007 PF13143 BF28_4007 BF28_4008 PF00202 Aminotransferase class-III BF28_4009 PF00474 Sodium:solute symporter family BF28_401 PF12996 BF28_401 BF28_401 PF13524 Glycosyl transferases group 1 BF28_4010 PF04341 BF28_4010 BF28_4011 PF04116 BF28_4011 BF28_4013 PF01810 BF28_4013 BF28_4014 PF08892 BF28_4014 BF28_4015 PF00313 'Cold-shock' DNA-binding domain BF28_4016 PF10819 BF28_4016 BF28_4017 PF10782 BF28_4017 BF28_4018 PF13456 Reverse transcriptase-like BF28_4019 PF06177 BF28_4019 BF28_402 PF00534 Glycosyl transferases group 1 BF28_402 PF13439 Glycosyltransferase Family 4 BF28_4020 PF01263 Aldose 1-epimerase BF28_4021 PF13456 Reverse transcriptase-like BF28_4022 PF00892 EamA-like transporter family BF28_4024 PF00857 Isochorismatase family BF28_4025 PF13673 Acetyltransferase (GNAT) domain BF28_4026 PF01345 BF28_4026 BF28_4027 PF13040 BF28_4027 BF28_4028 PF01367 5'-3' exonuclease, C-terminal SAM fold BF28_4028 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF28_4029 PF00122 E1-E2 ATPase BF28_4029 PF00690 Cation transporter/ATPase, N-terminus BF28_403 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_403 PF14602 Hexapeptide repeat of succinyl-transferase BF28_4030 PF03994 BF28_4030 BF28_4031 PF03738 Glutathionylspermidine synthase preATP-grasp BF28_4034 PF00581 Rhodanese-like domain BF28_4035 PF10752 BF28_4035 BF28_4036 PF00583 Acetyltransferase (GNAT) family BF28_4037 PF13082 BF28_4037 BF28_4038 PF00350 Dynamin family BF28_404 PF07495 Y_Y_Y domain BF28_4040 PF04235 BF28_4040 BF28_4041 PF00860 Permease family BF28_4042 PF00156 Phosphoribosyl transferase domain BF28_4043 PF00557 Metallopeptidase family M24 BF28_4044 PF01636 Phosphotransferase enzyme family BF28_4045 PF00583 Acetyltransferase (GNAT) family BF28_4046 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BF28_4047 PF13307 Helicase C-terminal domain BF28_4048 PF13060 BF28_4048 BF28_4049 PF01170 Putative RNA methylase family UPF0020 BF28_4049 PF02926 THUMP domain BF28_405 PF01522 Polysaccharide deacetylase BF28_405 PF07495 Y_Y_Y domain BF28_4050 PF05103 DivIVA protein BF28_4051 PF06908 Protein of unknown function (DUF1273) BF28_4052 PF11122 BF28_4052 BF28_4053 PF14179 BF28_4053 BF28_4054 PF14178 BF28_4054 BF28_4055 PF08807 Bacterial domain of unknown function (DUF1798) BF28_4058 PF10720 BF28_4058 BF28_4059 PF03838 Recombination protein U BF28_406 PF12116 Stage III sporulation protein D BF28_4060 PF00041 Fibronectin type III domain BF28_4060 PF00905 Penicillin binding protein transpeptidase domain BF28_4060 PF00912 Transglycosylase BF28_4062 PF00633 Helix-hairpin-helix motif BF28_4062 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_4062 PF10576 Iron-sulfur binding domain of endonuclease III BF28_4063 PF07261 Replication initiation and membrane attachment BF28_4064 PF00155 Aminotransferase class I and II BF28_4066 PF14084 BF28_4066 BF28_4067 PF00929 Exonuclease BF28_4067 PF04851 Type III restriction enzyme, res subunit BF28_4067 PF13307 Helicase C-terminal domain BF28_4068 PF02261 Aspartate decarboxylase BF28_4069 PF02569 Pantoate-beta-alanine ligase BF28_407 PF06723 MreB/Mbl protein BF28_4070 PF02548 Ketopantoate hydroxymethyltransferase BF28_4071 PF13473 Cupredoxin-like domain BF28_4072 PF02237 Biotin protein ligase C terminal domain BF28_4072 PF03099 Biotin/lipoate A/B protein ligase family BF28_4072 PF08279 HTH domain BF28_4073 PF01743 Poly A polymerase head domain BF28_4073 PF12627 Probable RNA and SrmB- binding site of polymerase A BF28_4073 PF13735 tRNA nucleotidyltransferase domain 2 putative BF28_4074 PF00534 Glycosyl transferases group 1 BF28_4074 PF13439 Glycosyltransferase Family 4 BF28_4075 PF02585 GlcNAc-PI de-N-acetylase BF28_4076 PF02142 MGS-like domain BF28_4077 PF01113 Dihydrodipicolinate reductase, N-terminus BF28_4077 PF05173 Dihydrodipicolinate reductase, C-terminus BF28_4078 PF03819 MazG nucleotide pyrophosphohydrolase domain BF28_4079 PF02588 BF28_4079 BF28_4079 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_408 PF00534 Glycosyl transferases group 1 BF28_408 PF13579 Glycosyl transferase 4-like domain BF28_4080 PF03167 Uracil DNA glycosylase superfamily BF28_4081 PF04298 BF28_4081 BF28_4082 PF09577 BF28_4082 BF28_4083 PF07314 BF28_4083 BF28_4084 PF07187 BF28_4084 BF28_4085 PF00032 Cytochrome b(C-terminal)/b6/petD BF28_4085 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF28_4086 PF00033 Cytochrome b(N-terminal)/b6/petB BF28_4087 PF00355 Rieske [2Fe-2S] domain BF28_4088 PF10673 BF28_4088 BF28_4089 PF08858 IDEAL domain BF28_4089 PF08864 UPF0302 domain BF28_409 PF00534 Glycosyl transferases group 1 BF28_4090 PF13176 Tetratricopeptide repeat BF28_4090 PF13429 Tetratricopeptide repeat BF28_4090 PF14559 Tetratricopeptide repeat BF28_4091 PF00155 Aminotransferase class I and II BF28_4092 PF01761 3-dehydroquinate synthase BF28_4093 PF01264 Chorismate synthase BF28_4094 PF00334 Nucleoside diphosphate kinase BF28_4095 PF00348 Polyprenyl synthetase BF28_4096 PF01209 ubiE/COQ5 methyltransferase family BF28_4097 PF07307 BF28_4097 BF28_4098 PF01227 GTP cyclohydrolase I BF28_4099 PF00216 Bacterial DNA-binding protein BF28_41 PF00333 Ribosomal protein S5, N-terminal domain BF28_41 PF03719 Ribosomal protein S5, C-terminal domain BF28_4100 PF09547 BF28_4100 BF28_4102 PF10966 BF28_4102 BF28_4103 PF14069 BF28_4103 BF28_4104 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF28_4104 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF28_4105 PF01926 50S ribosome-binding GTPase BF28_4105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF28_4107 PF14045 BF28_4107 BF28_4109 PF14140 BF28_4109 BF28_4110 PF01070 FMN-dependent dehydrogenase BF28_4111 PF00575 S1 RNA binding domain BF28_4112 PF02224 Cytidylate kinase BF28_4113 PF17313 BF28_4113 BF28_4114 PF00710 Asparaginase BF28_4115 PF13738 Pyridine nucleotide-disulphide oxidoreductase BF28_4116 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_4117 PF13106 BF28_4117 BF28_4119 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_4119 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF28_412 PF12996 BF28_412 BF28_412 PF13524 Glycosyl transferases group 1 BF28_4120 PF05389 Negative regulator of genetic competence (MecA) BF28_4121 PF13411 MerR HTH family regulatory protein BF28_4122 PF12850 Calcineurin-like phosphoesterase superfamily domain BF28_4123 PF01476 LysM domain BF28_4124 PF02517 CAAX protease self-immunity BF28_4125 PF00270 DEAD/DEAH box helicase BF28_4125 PF00271 Helicase conserved C-terminal domain BF28_4126 PF14493 BF28_4126 BF28_4127 PF13370 4Fe-4S single cluster domain BF28_4128 PF12822 Protein of unknown function (DUF3816) BF28_413 PF00534 Glycosyl transferases group 1 BF28_4130 PF01476 LysM domain BF28_4130 PF01551 Peptidase family M23 BF28_4131 PF01923 Cobalamin adenosyltransferase BF28_4132 PF00512 His Kinase A (phospho-acceptor) domain BF28_4132 PF00672 HAMP domain BF28_4132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4133 PF00072 Response regulator receiver domain BF28_4133 PF00486 Transcriptional regulatory protein, C terminal BF28_4134 PF01578 BF28_4134 BF28_4135 PF05140 BF28_4135 BF28_4136 PF00578 AhpC/TSA family BF28_4137 PF00849 RNA pseudouridylate synthase BF28_4137 PF01479 S4 domain BF28_4139 PF07670 Nucleoside recognition BF28_414 PF07940 Heparinase II/III-like protein BF28_414 PF16889 BF28_414 BF28_4140 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_4140 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_4141 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF28_4141 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF28_4142 PF13047 BF28_4142 BF28_4144 PF03706 BF28_4144 BF28_4144 PF09924 Uncharacterized conserved protein (DUF2156) BF28_4146 PF01385 BF28_4146 BF28_4147 PF01048 Phosphorylase superfamily BF28_4148 PF00512 His Kinase A (phospho-acceptor) domain BF28_4148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4149 PF00589 Phage integrase family BF28_415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF28_415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF28_415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF28_4150 PF13062 BF28_4150 BF28_4151 PF01904 Protein of unknown function DUF72 BF28_4152 PF00512 His Kinase A (phospho-acceptor) domain BF28_4152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4152 PF13426 PAS domain BF28_4153 PF01391 Collagen triple helix repeat (20 copies) BF28_4155 PF00905 Penicillin binding protein transpeptidase domain BF28_4155 PF00912 Transglycosylase BF28_4156 PF01865 Protein of unknown function DUF47 BF28_4157 PF01384 BF28_4157 BF28_4158 PF01925 BF28_4158 BF28_416 PF01061 BF28_416 BF28_4160 PF00027 Cyclic nucleotide-binding domain BF28_4161 PF00042 Globin BF28_4161 PF00175 Oxidoreductase NAD-binding domain BF28_4161 PF00970 Oxidoreductase FAD-binding domain BF28_4166 PF13847 Methyltransferase domain BF28_4168 PF05525 BF28_4168 BF28_4169 PF13059 BF28_4169 BF28_417 PF00005 ABC transporter BF28_417 PF08239 Bacterial SH3 domain BF28_4170 PF00072 Response regulator receiver domain BF28_4170 PF00196 Bacterial regulatory proteins, luxR family BF28_4171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4171 PF07730 Histidine kinase BF28_4172 PF09922 Cell wall-active antibiotics response protein (DUF2154) BF28_4173 PF04012 BF28_4173 BF28_4175 PF03553 BF28_4175 BF28_4176 PF04167 Protein of unknown function (DUF402) BF28_4177 PF00375 Sodium:dicarboxylate symporter family BF28_4178 PF01551 Peptidase family M23 BF28_4179 PF00209 Sodium:neurotransmitter symporter family BF28_418 PF02350 UDP-N-acetylglucosamine 2-epimerase BF28_4180 PF13241 Putative NAD(P)-binding BF28_4180 PF14824 Sirohaem biosynthesis protein central BF28_4181 PF01903 CbiX BF28_4182 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF28_4183 PF13046 BF28_4183 BF28_4184 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF28_4184 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF28_4185 PF01583 Adenylylsulphate kinase BF28_4186 PF01747 ATP-sulfurylase BF28_4186 PF14306 PUA-like domain BF28_4187 PF01507 Phosphoadenosine phosphosulfate reductase family BF28_4188 PF10055 BF28_4188 BF28_4189 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF28_4189 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF28_419 PF07977 FabA-like domain BF28_4190 PF13027 BF28_4190 BF28_4191 PF00884 Sulfatase BF28_4192 PF01066 CDP-alcohol phosphatidyltransferase BF28_4193 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF28_4193 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF28_4194 PF13217 BF28_4194 BF28_4196 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF28_4197 PF01502 Phosphoribosyl-AMP cyclohydrolase BF28_4198 PF00977 Histidine biosynthesis protein BF28_4199 PF00977 Histidine biosynthesis protein BF28_42 PF00861 Ribosomal L18p/L5e family BF28_4200 PF00117 Glutamine amidotransferase class-I BF28_4201 PF00475 Imidazoleglycerol-phosphate dehydratase BF28_4202 PF00815 Histidinol dehydrogenase BF28_4203 PF01634 ATP phosphoribosyltransferase BF28_4204 PF13393 Histidyl-tRNA synthetase BF28_4205 PF00694 Aconitase C-terminal domain BF28_4206 PF00330 Aconitase family (aconitate hydratase) BF28_4207 PF00180 Isocitrate/isopropylmalate dehydrogenase BF28_4208 PF00682 HMGL-like BF28_4208 PF08502 LeuA allosteric (dimerisation) domain BF28_4209 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF28_4209 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain BF28_421 PF03816 Cell envelope-related transcriptional attenuator domain BF28_4210 PF01842 ACT domain BF28_4210 PF10369 Small subunit of acetolactate synthase BF28_4211 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_4211 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_4211 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_4212 PF01063 Aminotransferase class IV BF28_4213 PF13050 BF28_4213 BF28_4214 PF03698 BF28_4214 BF28_4216 PF09579 BF28_4216 BF28_4218 PF02386 Cation transport protein BF28_4219 PF00375 Sodium:dicarboxylate symporter family BF28_422 PF01370 NAD dependent epimerase/dehydratase family BF28_4221 PF01047 MarR family BF28_4222 PF14184 BF28_4222 BF28_4223 PF14595 Thioredoxin BF28_4224 PF02673 BF28_4224 BF28_4225 PF01554 MatE BF28_4229 PF01636 Phosphotransferase enzyme family BF28_423 PF00072 Response regulator receiver domain BF28_423 PF00486 Transcriptional regulatory protein, C terminal BF28_4232 PF00258 Flavodoxin BF28_4234 PF01546 Peptidase family M20/M25/M40 BF28_4234 PF07687 Peptidase dimerisation domain BF28_4235 PF12459 BF28_4235 BF28_4236 PF00501 AMP-binding enzyme BF28_4236 PF13193 AMP-binding enzyme C-terminal domain BF28_4237 PF03062 BF28_4237 BF28_4238 PF00550 Phosphopantetheine attachment site BF28_4239 PF04914 DltD C-terminal region BF28_424 PF00512 His Kinase A (phospho-acceptor) domain BF28_424 PF00672 HAMP domain BF28_424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4240 PF03060 Nitronate monooxygenase BF28_4241 PF02016 LD-carboxypeptidase BF28_4242 PF07179 BF28_4242 BF28_4243 PF00857 Isochorismatase family BF28_4245 PF01037 AsnC family BF28_4245 PF13412 Winged helix-turn-helix DNA-binding BF28_4246 PF13052 BF28_4246 BF28_4247 PF02517 CAAX protease self-immunity BF28_4248 PF12730 BF28_4248 BF28_4249 PF00005 ABC transporter BF28_425 PF13057 BF28_425 BF28_4251 PF00005 ABC transporter BF28_4252 PF00392 Bacterial regulatory proteins, gntR family BF28_4253 PF00268 Ribonucleotide reductase, small chain BF28_4254 PF02867 Ribonucleotide reductase, barrel domain BF28_4255 PF00317 Ribonucleotide reductase, all-alpha domain BF28_4255 PF02867 Ribonucleotide reductase, barrel domain BF28_4255 PF08343 Ribonucleotide reductase N-terminal BF28_4256 PF07972 NrdI Flavodoxin like BF28_4259 PF00583 Acetyltransferase (GNAT) family BF28_426 PF13343 Bacterial extracellular solute-binding protein BF28_4262 PF09953 BF28_4262 BF28_4263 PF14489 QueF-like protein BF28_4264 PF04055 Radical SAM superfamily BF28_4264 PF13353 4Fe-4S single cluster domain BF28_4265 PF01242 6-pyruvoyl tetrahydropterin synthase BF28_4266 PF06508 Queuosine biosynthesis protein QueC BF28_4267 PF00512 His Kinase A (phospho-acceptor) domain BF28_4267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4267 PF07694 5TMR of 5TMR-LYT BF28_4269 PF12867 DinB superfamily BF28_427 PF07690 Major Facilitator Superfamily BF28_4271 PF01047 MarR family BF28_4272 PF00512 His Kinase A (phospho-acceptor) domain BF28_4272 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4272 PF02743 Cache domain BF28_4272 PF11346 BF28_4272 BF28_4273 PF09388 Spo0E like sporulation regulatory protein BF28_4274 PF04748 Divergent polysaccharide deacetylase BF28_4275 PF00571 CBS domain BF28_4276 PF00596 Class II Aldolase and Adducin N-terminal domain BF28_4277 PF00395 S-layer homology domain BF28_4277 PF05031 Iron Transport-associated domain BF28_4277 PF12799 Leucine Rich repeats (2 copies) BF28_4279 PF00455 BF28_4279 BF28_4279 PF08220 DeoR-like helix-turn-helix domain BF28_428 PF11683 BF28_428 BF28_4280 PF03435 Saccharopine dehydrogenase BF28_4280 PF16653 BF28_4280 BF28_4281 PF00266 Aminotransferase class-V BF28_4282 PF13419 Haloacid dehalogenase-like hydrolase BF28_4283 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4284 PF00005 ABC transporter BF28_4284 PF08402 TOBE domain BF28_4285 PF13343 Bacterial extracellular solute-binding protein BF28_4287 PF13045 BF28_4287 BF28_4288 PF02386 Cation transport protein BF28_4289 PF01266 FAD dependent oxidoreductase BF28_429 PF01381 Helix-turn-helix BF28_4290 PF00561 alpha/beta hydrolase fold BF28_4291 PF00106 short chain dehydrogenase BF28_4293 PF03551 Transcriptional regulator PadR-like family BF28_4294 PF09602 BF28_4294 BF28_4295 PF01575 MaoC like domain BF28_4296 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_4297 PF02386 Cation transport protein BF28_4298 PF03741 BF28_4298 BF28_4299 PF01226 Formate/nitrite transporter BF28_43 PF00347 Ribosomal protein L6 BF28_430 PF13437 HlyD family secretion protein BF28_430 PF13533 Biotin-lipoyl like BF28_4301 PF01478 Type IV leader peptidase family BF28_4301 PF06750 BF28_4301 BF28_4302 PF02589 Uncharacterised ACR, YkgG family COG1556 BF28_4303 PF02589 Uncharacterised ACR, YkgG family COG1556 BF28_4303 PF11870 BF28_4303 BF28_4303 PF13183 4Fe-4S dicluster domain BF28_4304 PF02754 BF28_4304 BF28_4305 PF00392 Bacterial regulatory proteins, gntR family BF28_4305 PF07729 FCD domain BF28_4306 PF00512 His Kinase A (phospho-acceptor) domain BF28_4306 PF00672 HAMP domain BF28_4306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4307 PF00072 Response regulator receiver domain BF28_4307 PF00486 Transcriptional regulatory protein, C terminal BF28_4309 PF05651 BF28_4309 BF28_4309 PF13556 PucR C-terminal helix-turn-helix domain BF28_431 PF00005 ABC transporter BF28_4310 PF01565 FAD binding domain BF28_4310 PF02913 FAD linked oxidases, C-terminal domain BF28_4311 PF02754 BF28_4311 BF28_4311 PF13183 4Fe-4S dicluster domain BF28_4312 PF00188 Cysteine-rich secretory protein family BF28_4313 PF07853 BF28_4313 BF28_4314 PF00849 RNA pseudouridylate synthase BF28_4316 PF03176 MMPL family BF28_4317 PF01569 PAP2 superfamily BF28_4318 PF13416 Bacterial extracellular solute-binding protein BF28_4319 PF00528 Binding-protein-dependent transport system inner membrane component BF28_432 PF02687 BF28_432 BF28_432 PF12704 MacB-like periplasmic core domain BF28_4320 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4321 PF00005 ABC transporter BF28_4321 PF08402 TOBE domain BF28_4322 PF00171 Aldehyde dehydrogenase family BF28_4323 PF05547 BF28_4323 BF28_4324 PF01381 Helix-turn-helix BF28_4324 PF08671 Anti-repressor SinI BF28_4325 PF12389 BF28_4325 BF28_4326 PF13256 BF28_4326 BF28_4327 PF12389 BF28_4327 BF28_4328 PF00717 Peptidase S24-like BF28_4329 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_4329 PF07943 Penicillin-binding protein 5, C-terminal domain BF28_433 PF06930 BF28_433 BF28_4331 PF08241 Methyltransferase domain BF28_4335 PF13780 BF28_4335 BF28_434 PF04893 BF28_434 BF28_4340 PF13780 BF28_4340 BF28_4342 PF06013 Proteins of 100 residues with WXG BF28_4343 PF12870 Lumazine-binding domain BF28_4347 PF13121 BF28_4347 BF28_4349 PF01381 Helix-turn-helix BF28_435 PF04542 Sigma-70 region 2 BF28_435 PF04545 Sigma-70, region 4 BF28_4350 PF00676 Dehydrogenase E1 component BF28_4350 PF02779 Transketolase, pyrimidine binding domain BF28_4350 PF16870 BF28_4350 BF28_4351 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF28_4351 PF00364 Biotin-requiring enzyme BF28_4351 PF02817 e3 binding domain BF28_4353 PF02624 YcaO-like family BF28_4354 PF00881 Nitroreductase family BF28_4355 PF08241 Methyltransferase domain BF28_4356 PF13048 BF28_4356 BF28_4357 PF00583 Acetyltransferase (GNAT) family BF28_4358 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_4358 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_436 PF06338 BF28_436 BF28_4362 PF10042 BF28_4362 BF28_4363 PF02652 BF28_4363 BF28_4364 PF13221 BF28_4364 BF28_4365 PF00290 Tryptophan synthase alpha chain BF28_4366 PF00291 Pyridoxal-phosphate dependent enzyme BF28_4367 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BF28_4368 PF00218 Indole-3-glycerol phosphate synthase BF28_4369 PF00591 Glycosyl transferase family, a/b domain BF28_4369 PF02885 Glycosyl transferase family, helical bundle domain BF28_437 PF14271 BF28_437 BF28_4370 PF00117 Glutamine amidotransferase class-I BF28_4371 PF00425 chorismate binding enzyme BF28_4371 PF04715 Anthranilate synthase component I, N terminal region BF28_4372 PF00474 Sodium:solute symporter family BF28_4373 PF02368 Bacterial Ig-like domain (group 2) BF28_4374 PF06713 BF28_4374 BF28_4375 PF00892 EamA-like transporter family BF28_4376 PF00756 Putative esterase BF28_4377 PF13563 2'-5' RNA ligase superfamily BF28_4378 PF13673 Acetyltransferase (GNAT) domain BF28_4379 PF00580 UvrD/REP helicase N-terminal domain BF28_4379 PF13361 UvrD-like helicase C-terminal domain BF28_438 PF11148 BF28_438 BF28_4380 PF10612 BF28_4380 BF28_4382 PF07098 BF28_4382 BF28_4383 PF10612 BF28_4383 BF28_4384 PF14153 BF28_4384 BF28_4385 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_4386 PF04321 RmlD substrate binding domain BF28_4387 PF16363 BF28_4387 BF28_4388 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BF28_4389 PF00483 Nucleotidyl transferase BF28_439 PF07872 BF28_439 BF28_4390 PF13712 Glycosyltransferase like family BF28_4391 PF13712 Glycosyltransferase like family BF28_4392 PF13489 Methyltransferase domain BF28_4393 PF00535 Glycosyl transferase family 2 BF28_4393 PF13181 Tetratricopeptide repeat BF28_4394 PF01391 Collagen triple helix repeat (20 copies) BF28_4395 PF05711 Macrocin-O-methyltransferase (TylF) BF28_4396 PF08241 Methyltransferase domain BF28_4397 PF00535 Glycosyl transferase family 2 BF28_4398 PF01098 BF28_4398 BF28_4399 PF00149 Calcineurin-like phosphoesterase BF28_44 PF00410 Ribosomal protein S8 BF28_440 PF04892 BF28_440 BF28_4400 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain BF28_4401 PF00849 RNA pseudouridylate synthase BF28_4402 PF01513 ATP-NAD kinase BF28_4403 PF04607 Region found in RelA / SpoT proteins BF28_4405 PF01928 CYTH domain BF28_4406 PF01152 Bacterial-like globin BF28_4407 PF13743 Thioredoxin BF28_4409 PF01432 Peptidase family M3 BF28_4409 PF08439 Oligopeptidase F BF28_441 PF00176 SNF2 family N-terminal domain BF28_441 PF00271 Helicase conserved C-terminal domain BF28_441 PF12419 BF28_441 BF28_4410 PF06054 BF28_4410 BF28_4411 PF13091 PLD-like domain BF28_4411 PF13396 BF28_4411 BF28_4412 PF05389 Negative regulator of genetic competence (MecA) BF28_4413 PF03741 BF28_4413 BF28_4414 PF03960 ArsC family BF28_4416 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4417 PF01554 MatE BF28_4418 PF00005 ABC transporter BF28_4418 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4419 PF00005 ABC transporter BF28_4419 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4420 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4420 PF12911 BF28_4420 BF28_4421 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4422 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4423 PF13038 BF28_4423 BF28_4424 PF00579 tRNA synthetases class I (W and Y) BF28_4425 PF12227 BF28_4425 BF28_4426 PF10026 BF28_4426 BF28_4427 PF00109 Beta-ketoacyl synthase, N-terminal domain BF28_4427 PF02801 Beta-ketoacyl synthase, C-terminal domain BF28_4428 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_4428 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_4429 PF10815 BF28_4429 BF28_443 PF10508 BF28_443 BF28_443 PF12773 BF28_443 BF28_4430 PF01370 NAD dependent epimerase/dehydratase family BF28_4432 PF11151 BF28_4432 BF28_4433 PF00004 ATPase family associated with various cellular activities (AAA) BF28_4433 PF02861 Clp amino terminal domain BF28_4433 PF07724 AAA domain (Cdc48 subfamily) BF28_4433 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_4434 PF14168 BF28_4434 BF28_4435 PF08282 haloacid dehalogenase-like hydrolase BF28_4437 PF12758 BF28_4437 BF28_4438 PF02588 BF28_4438 BF28_4438 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_4439 PF13081 BF28_4439 BF28_4440 PF13616 PPIC-type PPIASE domain BF28_4441 PF13509 S1 domain BF28_4442 PF04461 Protein of unknown function (DUF520) BF28_4443 PF12844 Helix-turn-helix domain BF28_4444 PF00128 Alpha amylase, catalytic domain BF28_4445 PF00909 Ammonium Transporter Family BF28_4446 PF00199 Catalase BF28_4446 PF06628 Catalase-related immune-responsive BF28_4447 PF00762 Ferrochelatase BF28_4448 PF00733 Asparagine synthase BF28_4448 PF13537 Glutamine amidotransferase domain BF28_4449 PF10949 BF28_4449 BF28_4450 PF07457 BF28_4450 BF28_4451 PF00202 Aminotransferase class-III BF28_4453 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF28_4454 PF09388 Spo0E like sporulation regulatory protein BF28_4455 PF10676 BF28_4455 BF28_4456 PF10803 BF28_4456 BF28_4457 PF10737 BF28_4457 BF28_4459 PF10970 BF28_4459 BF28_446 PF13049 BF28_446 BF28_4460 PF10676 BF28_4460 BF28_4461 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF28_4462 PF00580 UvrD/REP helicase N-terminal domain BF28_4462 PF12705 PD-(D/E)XK nuclease superfamily BF28_4462 PF13361 UvrD-like helicase C-terminal domain BF28_4463 PF12705 PD-(D/E)XK nuclease superfamily BF28_4463 PF13361 UvrD-like helicase C-terminal domain BF28_4464 PF00717 Peptidase S24-like BF28_4465 PF09335 BF28_4465 BF28_4466 PF06338 BF28_4466 BF28_4469 PF00313 'Cold-shock' DNA-binding domain BF28_447 PF06725 3D domain BF28_447 PF08239 Bacterial SH3 domain BF28_4470 PF01636 Phosphotransferase enzyme family BF28_4471 PF00463 Isocitrate lyase family BF28_4472 PF01274 Malate synthase BF28_4473 PF00395 S-layer homology domain BF28_4474 PF00395 S-layer homology domain BF28_4475 PF00395 S-layer homology domain BF28_4476 PF00892 EamA-like transporter family BF28_4477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_4477 PF00672 HAMP domain BF28_4477 PF12729 BF28_4477 BF28_4478 PF01435 Peptidase family M48 BF28_4478 PF16491 BF28_4478 BF28_448 PF02028 BCCT family transporter BF28_4482 PF02517 CAAX protease self-immunity BF28_4483 PF00072 Response regulator receiver domain BF28_4483 PF00486 Transcriptional regulatory protein, C terminal BF28_4484 PF00512 His Kinase A (phospho-acceptor) domain BF28_4484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4486 PF12833 Helix-turn-helix domain BF28_4486 PF14526 Integron-associated effector binding protein BF28_4487 PF04542 Sigma-70 region 2 BF28_4487 PF08281 Sigma-70, region 4 BF28_4488 PF13490 Putative zinc-finger BF28_4488 PF13791 BF28_4488 BF28_4488 PF13800 BF28_4488 BF28_4489 PF01966 HD domain BF28_4490 PF00149 Calcineurin-like phosphoesterase BF28_4491 PF07968 Leukocidin/Hemolysin toxin family BF28_4492 PF00395 S-layer homology domain BF28_4492 PF05031 Iron Transport-associated domain BF28_4494 PF00501 AMP-binding enzyme BF28_4494 PF13193 AMP-binding enzyme C-terminal domain BF28_4496 PF03099 Biotin/lipoate A/B protein ligase family BF28_4496 PF10437 Bacterial lipoate protein ligase C-terminus BF28_4497 PF12706 Beta-lactamase superfamily domain BF28_4498 PF14149 BF28_4498 BF28_4499 PF00356 Bacterial regulatory proteins, lacI family BF28_4499 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BF28_45 PF00253 Ribosomal protein S14p/S29e BF28_450 PF13641 Glycosyltransferase like family 2 BF28_4500 PF08279 HTH domain BF28_4500 PF13280 BF28_4500 BF28_4501 PF12867 DinB superfamily BF28_4502 PF00583 Acetyltransferase (GNAT) family BF28_4503 PF09860 BF28_4503 BF28_4505 PF12698 ABC-2 family transporter protein BF28_4506 PF00440 Bacterial regulatory proteins, tetR family BF28_4507 PF05569 BlaR1 peptidase M56 BF28_4508 PF03965 Penicillinase repressor BF28_451 PF00990 GGDEF domain BF28_4511 PF03372 Endonuclease/Exonuclease/phosphatase family BF28_4511 PF13290 BF28_4511 BF28_4512 PF10077 BF28_4512 BF28_4512 PF13218 BF28_4512 BF28_4513 PF01593 Flavin containing amine oxidoreductase BF28_4514 PF00762 Ferrochelatase BF28_4515 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF28_4516 PF00905 Penicillin binding protein transpeptidase domain BF28_4516 PF00912 Transglycosylase BF28_4517 PF03992 Antibiotic biosynthesis monooxygenase BF28_4518 PF03703 BF28_4518 BF28_4519 PF03703 BF28_4519 BF28_452 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_452 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_4521 PF00376 MerR family regulatory protein BF28_4521 PF09278 MerR, DNA binding BF28_4522 PF13599 Pentapeptide repeats (9 copies) BF28_4524 PF06993 BF28_4524 BF28_4525 PF00395 S-layer homology domain BF28_4527 PF03703 BF28_4527 BF28_4528 PF03703 BF28_4528 BF28_453 PF00877 NlpC/P60 family BF28_453 PF08239 Bacterial SH3 domain BF28_4530 PF00440 Bacterial regulatory proteins, tetR family BF28_4532 PF01764 Lipase (class 3) BF28_454 PF01063 Aminotransferase class IV BF28_4544 PF12787 BF28_4544 BF28_4545 PF05975 BF28_4545 BF28_4546 PF00005 ABC transporter BF28_4547 PF01230 HIT domain BF28_4548 PF12732 BF28_4548 BF28_4549 PF01047 MarR family BF28_455 PF00884 Sulfatase BF28_4550 PF08963 Protein of unknown function (DUF1878) BF28_4552 PF13616 PPIC-type PPIASE domain BF28_4553 PF13245 Part of AAA domain BF28_4553 PF13361 UvrD-like helicase C-terminal domain BF28_4553 PF13538 UvrD-like helicase C-terminal domain BF28_4555 PF07690 Major Facilitator Superfamily BF28_4556 PF07690 Major Facilitator Superfamily BF28_4557 PF13564 BF28_4557 BF28_4558 PF01047 MarR family BF28_4559 PF01098 BF28_4559 BF28_456 PF06803 BF28_456 BF28_4560 PF03551 Transcriptional regulator PadR-like family BF28_4561 PF04542 Sigma-70 region 2 BF28_4561 PF08281 Sigma-70, region 4 BF28_4562 PF11518 Protein of unknown function (DUF3221) BF28_4564 PF01266 FAD dependent oxidoreductase BF28_4564 PF16901 BF28_4564 BF28_4565 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_4565 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_4566 PF00230 Major intrinsic protein BF28_4567 PF04309 Glycerol-3-phosphate responsive antiterminator BF28_457 PF09988 BF28_457 BF28_4570 PF11155 Domain of unknown function (DUF2935) BF28_4571 PF14147 BF28_4571 BF28_4572 PF00561 alpha/beta hydrolase fold BF28_4575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_4576 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_4579 PF09951 BF28_4579 BF28_458 PF09685 BF28_458 BF28_4581 PF06013 Proteins of 100 residues with WXG BF28_4581 PF14410 BF28_4581 BF28_4581 PF14449 BF28_4581 BF28_4582 PF01336 OB-fold nucleic acid binding domain BF28_4582 PF01966 HD domain BF28_4583 PF13514 AAA domain BF28_4584 PF00149 Calcineurin-like phosphoesterase BF28_4585 PF14120 BF28_4585 BF28_4587 PF11121 BF28_4587 BF28_459 PF02652 BF28_459 BF28_4590 PF00107 Zinc-binding dehydrogenase BF28_4590 PF08240 Alcohol dehydrogenase GroES-like domain BF28_4591 PF12730 BF28_4591 BF28_4592 PF12730 BF28_4592 BF28_4593 PF00005 ABC transporter BF28_4594 PF00512 His Kinase A (phospho-acceptor) domain BF28_4594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4595 PF00072 Response regulator receiver domain BF28_4595 PF00486 Transcriptional regulatory protein, C terminal BF28_4597 PF01906 Putative heavy-metal-binding BF28_4598 PF13220 BF28_4598 BF28_4599 PF11181 BF28_4599 BF28_46 PF00281 Ribosomal protein L5 BF28_46 PF00673 ribosomal L5P family C-terminus BF28_4602 PF00072 Response regulator receiver domain BF28_4602 PF00512 His Kinase A (phospho-acceptor) domain BF28_4602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4602 PF05227 CHASE3 domain BF28_4602 PF13185 GAF domain BF28_4603 PF01739 CheR methyltransferase, SAM binding domain BF28_4603 PF03705 CheR methyltransferase, all-alpha domain BF28_4604 PF00072 Response regulator receiver domain BF28_4604 PF07228 Stage II sporulation protein E (SpoIIE) BF28_4605 PF00210 Ferritin-like domain BF28_4606 PF04539 Sigma-70 region 3 BF28_4606 PF04542 Sigma-70 region 2 BF28_4606 PF04545 Sigma-70, region 4 BF28_4607 PF13581 Histidine kinase-like ATPase domain BF28_4608 PF01740 STAS domain BF28_4610 PF04226 BF28_4610 BF28_4611 PF05532 CsbD-like BF28_4612 PF11181 BF28_4612 BF28_4613 PF12681 Glyoxalase-like domain BF28_4615 PF11193 BF28_4615 BF28_4616 PF03551 Transcriptional regulator PadR-like family BF28_4617 PF00395 S-layer homology domain BF28_4617 PF01841 Transglutaminase-like superfamily BF28_4621 PF09680 BF28_4621 BF28_4622 PF01966 HD domain BF28_4625 PF02517 CAAX protease self-immunity BF28_4626 PF11611 Domain of unknown function (DUF4352) BF28_4627 PF08239 Bacterial SH3 domain BF28_4628 PF02734 DAK2 domain BF28_4629 PF02082 Transcriptional regulator BF28_463 PF02652 BF28_463 BF28_4630 PF02525 Flavodoxin-like fold BF28_4631 PF02733 Dak1 domain BF28_4631 PF02734 DAK2 domain BF28_4632 PF00440 Bacterial regulatory proteins, tetR family BF28_4632 PF14278 BF28_4632 BF28_4633 PF02733 Dak1 domain BF28_4634 PF04892 BF28_4634 BF28_4635 PF10067 BF28_4635 BF28_4638 PF03899 BF28_4638 BF28_4639 PF01066 CDP-alcohol phosphatidyltransferase BF28_464 PF01964 ThiC family BF28_464 PF13667 ThiC-associated domain BF28_4640 PF12802 MarR family BF28_4641 PF00232 Glycosyl hydrolase family 1 BF28_4642 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF28_4642 PF00367 phosphotransferase system, EIIB BF28_4642 PF02378 Phosphotransferase system, EIIC BF28_4643 PF00874 PRD domain BF28_4643 PF03123 CAT RNA binding domain BF28_4644 PF14157 YmzC-like protein BF28_4645 PF00440 Bacterial regulatory proteins, tetR family BF28_4645 PF16925 BF28_4645 BF28_4646 PF07993 Male sterility protein BF28_4646 PF12697 Alpha/beta hydrolase family BF28_4647 PF04982 BF28_4647 BF28_4648 PF07336 Protein of unknown function (DUF1470) BF28_4648 PF11706 CGNR zinc finger BF28_465 PF02040 BF28_465 BF28_4650 PF06013 Proteins of 100 residues with WXG BF28_4652 PF13780 BF28_4652 BF28_4655 PF09680 BF28_4655 BF28_4657 PF03551 Transcriptional regulator PadR-like family BF28_4659 PF03773 BF28_4659 BF28_466 PF02322 BF28_466 BF28_4660 PF01925 BF28_4660 BF28_4661 PF01978 Sugar-specific transcriptional regulator TrmB BF28_4661 PF11495 Archaeal transcriptional regulator TrmB BF28_4662 PF00772 DnaB-like helicase N terminal domain BF28_4662 PF03796 DnaB-like helicase C terminal domain BF28_4663 PF07261 Replication initiation and membrane attachment BF28_4665 PF13411 MerR HTH family regulatory protein BF28_4667 PF09685 BF28_4667 BF28_4668 PF14072 BF28_4668 BF28_4669 PF01507 Phosphoadenosine phosphosulfate reductase family BF28_467 PF01654 BF28_467 BF28_4670 PF13476 AAA domain BF28_4671 PF08870 Domain of unknown function (DUF1832) BF28_4672 PF00266 Aminotransferase class-V BF28_4674 PF13476 AAA domain BF28_4676 PF01935 Domain of unknown function DUF87 BF28_4678 PF13643 BF28_4678 BF28_4679 PF08279 HTH domain BF28_4679 PF13280 BF28_4679 BF28_4681 PF14281 BF28_4681 BF28_4684 PF14567 SMI1-KNR4 cell-wall BF28_4685 PF14411 BF28_4685 BF28_4686 PF01935 Domain of unknown function DUF87 BF28_4688 PF00350 Dynamin family BF28_4690 PF00350 Dynamin family BF28_4691 PF13280 BF28_4691 BF28_4692 PF00005 ABC transporter BF28_4692 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4693 PF00005 ABC transporter BF28_4693 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4694 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4694 PF12911 BF28_4694 BF28_4695 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4696 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_47 PF00467 KOW motif BF28_47 PF17136 BF28_47 BF28_470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_470 PF03466 LysR substrate binding domain BF28_4700 PF02423 Ornithine cyclodeaminase/mu-crystallin family BF28_4701 PF05544 Proline racemase BF28_4702 PF11121 BF28_4702 BF28_4703 PF01170 Putative RNA methylase family UPF0020 BF28_4704 PF00395 S-layer homology domain BF28_4704 PF01520 N-acetylmuramoyl-L-alanine amidase BF28_4705 PF05343 M42 glutamyl aminopeptidase BF28_4709 PF00378 Enoyl-CoA hydratase/isomerase family BF28_471 PF12698 ABC-2 family transporter protein BF28_4711 PF13425 BF28_4711 BF28_4713 PF03062 BF28_4713 BF28_4714 PF03062 BF28_4714 BF28_4715 PF14286 DHHW protein BF28_4716 PF00395 S-layer homology domain BF28_4717 PF00395 S-layer homology domain BF28_4717 PF02368 Bacterial Ig-like domain (group 2) BF28_4718 PF04230 BF28_4718 BF28_4719 PF01943 BF28_4719 BF28_4719 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_472 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_4720 PF01043 SecA preprotein cross-linking domain BF28_4720 PF07516 SecA Wing and Scaffold domain BF28_4720 PF07517 SecA DEAD-like domain BF28_4724 PF00916 BF28_4724 BF28_4724 PF01740 STAS domain BF28_4726 PF00501 AMP-binding enzyme BF28_4726 PF13193 AMP-binding enzyme C-terminal domain BF28_4727 PF04055 Radical SAM superfamily BF28_4728 PF00395 S-layer homology domain BF28_4728 PF01510 N-acetylmuramoyl-L-alanine amidase BF28_473 PF01757 BF28_473 BF28_4730 PF08282 haloacid dehalogenase-like hydrolase BF28_4731 PF02245 Methylpurine-DNA glycosylase (MPG) BF28_4732 PF03306 Alpha-acetolactate decarboxylase BF28_4733 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_4733 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_4733 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_4734 PF08006 BF28_4734 BF28_4736 PF06030 BF28_4736 BF28_4736 PF11797 BF28_4736 BF28_4737 PF13731 BF28_4737 BF28_4738 PF13731 BF28_4738 BF28_474 PF00375 Sodium:dicarboxylate symporter family BF28_4740 PF13731 BF28_4740 BF28_4741 PF00072 Response regulator receiver domain BF28_4741 PF00196 Bacterial regulatory proteins, luxR family BF28_4742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4742 PF07730 Histidine kinase BF28_4744 PF06133 Protein of unknown function (DUF964) BF28_4745 PF04286 BF28_4745 BF28_4747 PF14398 BF28_4747 BF28_4749 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_4750 PF00005 ABC transporter BF28_4751 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4752 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_4753 PF00005 ABC transporter BF28_4753 PF00664 ABC transporter transmembrane region BF28_4754 PF00005 ABC transporter BF28_4754 PF00664 ABC transporter transmembrane region BF28_4755 PF00171 Aldehyde dehydrogenase family BF28_4756 PF13520 Amino acid permease BF28_4757 PF05975 BF28_4757 BF28_4758 PF00199 Catalase BF28_4758 PF06628 Catalase-related immune-responsive BF28_4759 PF01965 DJ-1/PfpI family BF28_476 PF02378 Phosphotransferase system, EIIC BF28_4761 PF07690 Major Facilitator Superfamily BF28_4762 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4762 PF12793 BF28_4762 BF28_4763 PF02525 Flavodoxin-like fold BF28_4764 PF07366 SnoaL-like polyketide cyclase BF28_4765 PF01638 HxlR-like helix-turn-helix BF28_4766 PF00107 Zinc-binding dehydrogenase BF28_4766 PF08240 Alcohol dehydrogenase GroES-like domain BF28_4767 PF00440 Bacterial regulatory proteins, tetR family BF28_4767 PF14278 BF28_4767 BF28_4768 PF00067 Cytochrome P450 BF28_4769 PF00440 Bacterial regulatory proteins, tetR family BF28_477 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF28_4770 PF07859 alpha/beta hydrolase fold BF28_4771 PF07690 Major Facilitator Superfamily BF28_4772 PF01494 FAD binding domain BF28_4773 PF01047 MarR family BF28_4774 PF01638 HxlR-like helix-turn-helix BF28_4775 PF07690 Major Facilitator Superfamily BF28_4776 PF00440 Bacterial regulatory proteins, tetR family BF28_4777 PF00893 Small Multidrug Resistance protein BF28_4778 PF00893 Small Multidrug Resistance protein BF28_4779 PF00583 Acetyltransferase (GNAT) family BF28_478 PF02675 S-adenosylmethionine decarboxylase BF28_4780 PF01037 AsnC family BF28_4780 PF13412 Winged helix-turn-helix DNA-binding BF28_4781 PF00892 EamA-like transporter family BF28_4783 PF12680 SnoaL-like domain BF28_4784 PF07681 BF28_4784 BF28_4785 PF05913 Bacterial protein of unknown function (DUF871) BF28_4786 PF01385 BF28_4786 BF28_4786 PF07282 BF28_4786 BF28_4787 PF02378 Phosphotransferase system, EIIC BF28_4788 PF00367 phosphotransferase system, EIIB BF28_4789 PF13580 SIS domain BF28_479 PF01564 Spermine/spermidine synthase BF28_4790 PF01380 SIS domain BF28_4790 PF01418 Helix-turn-helix domain, rpiR family BF28_4792 PF00999 Sodium/hydrogen exchanger family BF28_4793 PF13520 Amino acid permease BF28_4796 PF00149 Calcineurin-like phosphoesterase BF28_4796 PF13385 Concanavalin A-like lectin/glucanases superfamily BF28_4797 PF13157 BF28_4797 BF28_4798 PF13157 BF28_4798 BF28_4799 PF13157 BF28_4799 BF28_48 PF00238 Ribosomal protein L14p/L23e BF28_480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_4800 PF09335 BF28_4800 BF28_4801 PF06803 BF28_4801 BF28_4802 PF02735 Ku70/Ku80 beta-barrel domain BF28_4803 PF11155 Domain of unknown function (DUF2935) BF28_4805 PF11007 BF28_4805 BF28_4806 PF12652 BF28_4806 BF28_4807 PF05067 Manganese containing catalase BF28_4808 PF05525 BF28_4808 BF28_4809 PF02687 BF28_4809 BF28_481 PF02378 Phosphotransferase system, EIIC BF28_4810 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4811 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4812 PF09529 BF28_4812 BF28_4813 PF16576 BF28_4813 BF28_4814 PF00005 ABC transporter BF28_4815 PF02687 BF28_4815 BF28_4815 PF12704 MacB-like periplasmic core domain BF28_4816 PF06725 3D domain BF28_4816 PF08239 Bacterial SH3 domain BF28_4817 PF05913 Bacterial protein of unknown function (DUF871) BF28_4819 PF02378 Phosphotransferase system, EIIC BF28_482 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF28_4820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF28_4821 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF28_4822 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF28_4822 PF00874 PRD domain BF28_4822 PF05043 Mga helix-turn-helix domain BF28_4822 PF08279 HTH domain BF28_4823 PF05913 Bacterial protein of unknown function (DUF871) BF28_4824 PF03209 BF28_4824 BF28_4824 PF07690 Major Facilitator Superfamily BF28_4825 PF01895 PhoU domain BF28_4825 PF02690 BF28_4825 BF28_4826 PF00107 Zinc-binding dehydrogenase BF28_4826 PF08240 Alcohol dehydrogenase GroES-like domain BF28_4827 PF03816 Cell envelope-related transcriptional attenuator domain BF28_4829 PF01925 BF28_4829 BF28_483 PF02056 Family 4 glycosyl hydrolase BF28_483 PF11975 Family 4 glycosyl hydrolase C-terminal domain BF28_4830 PF13686 DsrE/DsrF/DrsH-like family BF28_4831 PF00581 Rhodanese-like domain BF28_4832 PF00581 Rhodanese-like domain BF28_4833 PF01206 Sulfurtransferase TusA BF28_4834 PF00581 Rhodanese-like domain BF28_4834 PF00753 Metallo-beta-lactamase superfamily BF28_4835 PF00581 Rhodanese-like domain BF28_4835 PF01206 Sulfurtransferase TusA BF28_4836 PF02583 Metal-sensitive transcriptional repressor BF28_4837 PF00581 Rhodanese-like domain BF28_4837 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF28_4837 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_4838 PF04734 Neutral/alkaline non-lysosomal ceramidase BF28_4839 PF04293 BF28_4839 BF28_484 PF04794 YdjC-like protein BF28_4840 PF00881 Nitroreductase family BF28_4842 PF03323 BF28_4842 BF28_4843 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_4844 PF03845 BF28_4844 BF28_4845 PF13798 BF28_4845 BF28_4846 PF14148 BF28_4846 BF28_4847 PF02600 Disulfide bond formation protein DsbB BF28_4848 PF00085 Thioredoxin BF28_4849 PF07561 BF28_4849 BF28_485 PF02417 BF28_485 BF28_4851 PF03734 L,D-transpeptidase catalytic domain BF28_4852 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_4853 PF00860 Permease family BF28_4855 PF01734 Patatin-like phospholipase BF28_4856 PF01047 MarR family BF28_4857 PF07690 Major Facilitator Superfamily BF28_4858 PF00582 Universal stress protein family BF28_4858 PF02702 Osmosensitive K+ channel His kinase sensor domain BF28_4859 PF02669 BF28_4859 BF28_486 PF07452 BF28_486 BF28_4860 PF00122 E1-E2 ATPase BF28_4860 PF00702 haloacid dehalogenase-like hydrolase BF28_4861 PF03814 BF28_4861 BF28_4865 PF08543 Phosphomethylpyrimidine kinase BF28_4866 PF00899 ThiF family BF28_4867 PF05690 Thiazole biosynthesis protein ThiG BF28_4868 PF02597 ThiS family BF28_4869 PF01266 FAD dependent oxidoreductase BF28_487 PF00158 Sigma-54 interaction domain BF28_487 PF00874 PRD domain BF28_487 PF03610 PTS system fructose IIA component BF28_4870 PF02581 Thiamine monophosphate synthase/TENI BF28_4871 PF09084 NMT1/THI5 like BF28_4872 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4873 PF00005 ABC transporter BF28_4874 PF03070 TENA/THI-4/PQQC family BF28_4875 PF01551 Peptidase family M23 BF28_4875 PF08239 Bacterial SH3 domain BF28_4877 PF13112 BF28_4877 BF28_4877 PF13142 BF28_4877 BF28_4878 PF00571 CBS domain BF28_488 PF01522 Polysaccharide deacetylase BF28_489 PF00953 Glycosyl transferase family 4 BF28_49 PF00366 Ribosomal protein S17 BF28_490 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF28_490 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF28_490 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF28_4903 PF00873 AcrB/AcrD/AcrF family BF28_4904 PF13671 AAA domain BF28_4905 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4906 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4907 PF12849 PBP superfamily domain BF28_4908 PF04023 FeoA domain BF28_4909 PF02421 Ferrous iron transport protein B BF28_491 PF02350 UDP-N-acetylglucosamine 2-epimerase BF28_4910 PF07664 BF28_4910 BF28_4910 PF07670 Nucleoside recognition BF28_4911 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_4912 PF03845 BF28_4912 BF28_4913 PF03323 BF28_4913 BF28_4914 PF00474 Sodium:solute symporter family BF28_4915 PF11755 BF28_4915 BF28_4916 PF01546 Peptidase family M20/M25/M40 BF28_4916 PF07687 Peptidase dimerisation domain BF28_4917 PF13529 Peptidase_C39 like family BF28_4918 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF28_4919 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF28_492 PF03816 Cell envelope-related transcriptional attenuator domain BF28_4920 PF00510 Cytochrome c oxidase subunit III BF28_4921 PF03626 BF28_4921 BF28_4922 PF00999 Sodium/hydrogen exchanger family BF28_4922 PF02080 TrkA-C domain BF28_4922 PF02254 TrkA-N domain BF28_4923 PF13214 BF28_4923 BF28_4924 PF00583 Acetyltransferase (GNAT) family BF28_4926 PF01381 Helix-turn-helix BF28_4927 PF00860 Permease family BF28_4928 PF00324 Amino acid permease BF28_493 PF01205 Uncharacterized protein family UPF0029 BF28_493 PF09186 Domain of unknown function (DUF1949) BF28_4930 PF10101 BF28_4930 BF28_4931 PF05525 BF28_4931 BF28_4932 PF00854 POT family BF28_4933 PF04203 Sortase family BF28_4935 PF01381 Helix-turn-helix BF28_4936 PF06725 3D domain BF28_4937 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_4938 PF02673 BF28_4938 BF28_494 PF02645 Uncharacterised protein, DegV family COG1307 BF28_4940 PF04892 BF28_4940 BF28_4940 PF06271 BF28_4940 BF28_4941 PF01565 FAD binding domain BF28_4941 PF04030 D-arabinono-1,4-lactone oxidase BF28_4942 PF01168 Alanine racemase, N-terminal domain BF28_4943 PF03372 Endonuclease/Exonuclease/phosphatase family BF28_4944 PF00882 Zinc dependent phospholipase C BF28_4945 PF07885 Ion channel BF28_4947 PF07885 Ion channel BF28_4948 PF00107 Zinc-binding dehydrogenase BF28_4948 PF08240 Alcohol dehydrogenase GroES-like domain BF28_4948 PF13823 Alcohol dehydrogenase GroES-associated BF28_4949 PF03209 BF28_4949 BF28_4949 PF07690 Major Facilitator Superfamily BF28_495 PF01638 HxlR-like helix-turn-helix BF28_4951 PF05547 BF28_4951 BF28_4952 PF00923 Transaldolase BF28_4953 PF13407 Periplasmic binding protein domain BF28_4954 PF02653 BF28_4954 BF28_4955 PF00005 ABC transporter BF28_4956 PF05025 RbsD / FucU transport protein family BF28_4957 PF00294 pfkB family carbohydrate kinase BF28_4958 PF00356 Bacterial regulatory proteins, lacI family BF28_4958 PF13377 Periplasmic binding protein-like domain BF28_4959 PF07690 Major Facilitator Superfamily BF28_496 PF00877 NlpC/P60 family BF28_4960 PF01047 MarR family BF28_4961 PF07690 Major Facilitator Superfamily BF28_4962 PF00005 ABC transporter BF28_4962 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4963 PF00005 ABC transporter BF28_4963 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_4964 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4965 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4965 PF12911 BF28_4965 BF28_4966 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_4967 PF13219 BF28_4967 BF28_4968 PF00582 Universal stress protein family BF28_4969 PF00916 BF28_4969 BF28_497 PF00271 Helicase conserved C-terminal domain BF28_497 PF04851 Type III restriction enzyme, res subunit BF28_4971 PF00072 Response regulator receiver domain BF28_4971 PF00486 Transcriptional regulatory protein, C terminal BF28_4972 PF00512 His Kinase A (phospho-acceptor) domain BF28_4972 PF00672 HAMP domain BF28_4972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_4973 PF01872 RibD C-terminal domain BF28_4974 PF08279 HTH domain BF28_4974 PF13280 BF28_4974 BF28_4975 PF14285 BF28_4975 BF28_4976 PF04542 Sigma-70 region 2 BF28_4976 PF08281 Sigma-70, region 4 BF28_4977 PF01230 HIT domain BF28_4978 PF02566 OsmC-like protein BF28_4979 PF00324 Amino acid permease BF28_498 PF00156 Phosphoribosyl transferase domain BF28_4980 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4981 PF00528 Binding-protein-dependent transport system inner membrane component BF28_4982 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_4983 PF00005 ABC transporter BF28_4984 PF01235 BF28_4984 BF28_4985 PF01636 Phosphotransferase enzyme family BF28_4986 PF02517 CAAX protease self-immunity BF28_4987 PF03323 BF28_4987 BF28_4988 PF03845 BF28_4988 BF28_4989 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_499 PF00313 'Cold-shock' DNA-binding domain BF28_4990 PF00128 Alpha amylase, catalytic domain BF28_4990 PF16657 BF28_4990 BF28_4991 PF00367 phosphotransferase system, EIIB BF28_4991 PF02378 Phosphotransferase system, EIIC BF28_4992 PF00392 Bacterial regulatory proteins, gntR family BF28_4992 PF07702 UTRA domain BF28_4993 PF13520 Amino acid permease BF28_4994 PF00563 EAL domain BF28_4994 PF00990 GGDEF domain BF28_4994 PF13426 PAS domain BF28_4997 PF13091 PLD-like domain BF28_4997 PF13396 BF28_4997 BF28_4998 PF07728 AAA domain (dynein-related subfamily) BF28_4999 PF00092 von Willebrand factor type A domain BF28_50 PF00831 Ribosomal L29 protein BF28_500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF28_500 PF16321 BF28_500 BF28_5000 PF00293 NUDIX domain BF28_5001 PF00156 Phosphoribosyl transferase domain BF28_5002 PF01370 NAD dependent epimerase/dehydratase family BF28_5003 PF00155 Aminotransferase class I and II BF28_5004 PF13649 Methyltransferase domain BF28_5005 PF00005 ABC transporter BF28_5006 PF01032 FecCD transport family BF28_5007 PF01032 FecCD transport family BF28_5008 PF01497 Periplasmic binding protein BF28_5009 PF00854 POT family BF28_501 PF00271 Helicase conserved C-terminal domain BF28_501 PF01043 SecA preprotein cross-linking domain BF28_501 PF02810 SEC-C motif BF28_501 PF07516 SecA Wing and Scaffold domain BF28_501 PF07517 SecA DEAD-like domain BF28_5010 PF08141 BF28_5010 BF28_5011 PF12840 Helix-turn-helix domain BF28_5012 PF02652 BF28_5012 BF28_5013 PF00206 Lyase BF28_5013 PF10415 Fumarase C C-terminus BF28_5014 PF00571 CBS domain BF28_5014 PF01595 BF28_5014 BF28_5014 PF03471 Transporter associated domain BF28_5015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5016 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_5016 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_5016 PF07670 Nucleoside recognition BF28_5017 PF03816 Cell envelope-related transcriptional attenuator domain BF28_5018 PF04294 BF28_5018 BF28_5018 PF12229 Putative peptidoglycan binding domain BF28_502 PF00472 RF-1 domain BF28_502 PF03462 PCRF domain BF28_5021 PF09335 BF28_5021 BF28_5022 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5022 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5022 PF03413 Peptidase propeptide and YPEB domain BF28_5022 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_5024 PF01381 Helix-turn-helix BF28_5024 PF13176 Tetratricopeptide repeat BF28_5024 PF13424 Tetratricopeptide repeat BF28_5025 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF28_5026 PF00122 E1-E2 ATPase BF28_5026 PF00403 Heavy-metal-associated domain BF28_5026 PF00702 haloacid dehalogenase-like hydrolase BF28_5027 PF01022 Bacterial regulatory protein, arsR family BF28_5028 PF13520 Amino acid permease BF28_5029 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF28_5029 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF28_503 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF28_5030 PF03009 Glycerophosphoryl diester phosphodiesterase family BF28_5030 PF10110 BF28_5030 BF28_5031 PF07849 BF28_5031 BF28_5032 PF00384 Molybdopterin oxidoreductase BF28_5032 PF01568 Molydopterin dinucleotide binding domain BF28_5032 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF28_5032 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_5032 PF12838 4Fe-4S dicluster domain BF28_5032 PF13510 2Fe-2S iron-sulfur cluster binding domain BF28_5033 PF02634 FdhD/NarQ family BF28_5034 PF13420 Acetyltransferase (GNAT) domain BF28_5036 PF00072 Response regulator receiver domain BF28_5036 PF00486 Transcriptional regulatory protein, C terminal BF28_5037 PF00512 His Kinase A (phospho-acceptor) domain BF28_5037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5038 PF00583 Acetyltransferase (GNAT) family BF28_5039 PF00155 Aminotransferase class I and II BF28_5039 PF00392 Bacterial regulatory proteins, gntR family BF28_504 PF00005 ABC transporter BF28_5040 PF00892 EamA-like transporter family BF28_5041 PF16167 BF28_5041 BF28_5042 PF00390 Malic enzyme, N-terminal domain BF28_5042 PF03949 Malic enzyme, NAD binding domain BF28_5043 PF03390 BF28_5043 BF28_5044 PF00072 Response regulator receiver domain BF28_5045 PF00989 PAS fold BF28_5045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5045 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF28_5045 PF17203 BF28_5045 BF28_5046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5046 PF00672 HAMP domain BF28_5046 PF02743 Cache domain BF28_5047 PF13529 Peptidase_C39 like family BF28_5049 PF00512 His Kinase A (phospho-acceptor) domain BF28_5049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_505 PF02687 BF28_505 BF28_5050 PF00072 Response regulator receiver domain BF28_5050 PF00486 Transcriptional regulatory protein, C terminal BF28_5051 PF00149 Calcineurin-like phosphoesterase BF28_5052 PF13416 Bacterial extracellular solute-binding protein BF28_5053 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5054 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5055 PF00005 ABC transporter BF28_5056 PF04309 Glycerol-3-phosphate responsive antiterminator BF28_5057 PF12796 Ankyrin repeats (3 copies) BF28_5057 PF13637 Ankyrin repeats (many copies) BF28_5058 PF05573 NosL BF28_506 PF01471 Putative peptidoglycan binding domain BF28_506 PF03572 Peptidase family S41 BF28_506 PF13180 PDZ domain BF28_5061 PF03600 Citrate transporter BF28_5062 PF01385 BF28_5062 BF28_5062 PF07282 BF28_5062 BF28_5062 PF12323 BF28_5062 BF28_5063 PF00072 Response regulator receiver domain BF28_5064 PF00989 PAS fold BF28_5064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5064 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF28_5064 PF17203 BF28_5064 BF28_5065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5065 PF00672 HAMP domain BF28_5065 PF02743 Cache domain BF28_5066 PF01145 SPFH domain / Band 7 family BF28_5066 PF15975 BF28_5066 BF28_5068 PF00801 PKD domain BF28_5068 PF01752 Collagenase BF28_5068 PF04151 Bacterial pre-peptidase C-terminal domain BF28_5068 PF08453 Peptidase family M9 N-terminal BF28_5069 PF02028 BCCT family transporter BF28_5070 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5071 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5072 PF00005 ABC transporter BF28_5073 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_5074 PF00583 Acetyltransferase (GNAT) family BF28_5077 PF04285 BF28_5077 BF28_5078 PF06798 BF28_5078 BF28_5078 PF08298 PrkA AAA domain BF28_508 PF00005 ABC transporter BF28_508 PF00664 ABC transporter transmembrane region BF28_5080 PF00563 EAL domain BF28_5080 PF00990 GGDEF domain BF28_5080 PF08448 PAS fold BF28_5081 PF00588 SpoU rRNA Methylase family BF28_5082 PF12671 BF28_5082 BF28_5083 PF08331 BF28_5083 BF28_5083 PF13484 BF28_5083 BF28_5083 PF13646 HEAT repeats BF28_5085 PF13462 Thioredoxin BF28_5086 PF00912 Transglycosylase BF28_5087 PF00293 NUDIX domain BF28_5088 PF01709 Transcriptional regulator BF28_5089 PF13024 BF28_5089 BF28_509 PF01906 Putative heavy-metal-binding BF28_51 PF00252 Ribosomal protein L16p/L10e BF28_510 PF00005 ABC transporter BF28_510 PF12848 ABC transporter BF28_5109 PF11023 BF28_5109 BF28_511 PF03358 NADPH-dependent FMN reductase BF28_5110 PF01475 Ferric uptake regulator family BF28_5111 PF00578 AhpC/TSA family BF28_5112 PF07885 Ion channel BF28_5113 PF06182 BF28_5113 BF28_5114 PF06182 BF28_5114 BF28_5115 PF00005 ABC transporter BF28_5116 PF00202 Aminotransferase class-III BF28_5117 PF00310 Glutamine amidotransferases class-II BF28_5117 PF01493 GXGXG motif BF28_5117 PF01645 Conserved region in glutamate synthase BF28_5117 PF04898 Glutamate synthase central domain BF28_5118 PF06081 BF28_5118 BF28_5119 PF00005 ABC transporter BF28_5119 PF00664 ABC transporter transmembrane region BF28_512 PF13411 MerR HTH family regulatory protein BF28_5120 PF04167 Protein of unknown function (DUF402) BF28_5121 PF14182 BF28_5121 BF28_5122 PF04259 BF28_5122 BF28_5124 PF00633 Helix-hairpin-helix motif BF28_5124 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_5124 PF14815 NUDIX domain BF28_5125 PF04307 BF28_5125 BF28_5126 PF14043 BF28_5126 BF28_5127 PF08176 BF28_5127 BF28_5128 PF14139 BF28_5128 BF28_5129 PF08838 Protein of unknown function (DUF1811) BF28_513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_513 PF03466 LysR substrate binding domain BF28_5130 PF02631 RecX family BF28_5131 PF01370 NAD dependent epimerase/dehydratase family BF28_5131 PF08338 Domain of unknown function (DUF1731) BF28_5132 PF01979 Amidohydrolase family BF28_5133 PF13302 Acetyltransferase (GNAT) domain BF28_5134 PF14152 BF28_5134 BF28_5135 PF04101 Glycosyltransferase family 28 C-terminal domain BF28_5135 PF06925 BF28_5135 BF28_5136 PF04055 Radical SAM superfamily BF28_5136 PF13353 4Fe-4S single cluster domain BF28_5137 PF01228 Glycine radical BF28_5137 PF02901 Pyruvate formate lyase BF28_5138 PF00535 Glycosyl transferase family 2 BF28_5139 PF01370 NAD dependent epimerase/dehydratase family BF28_514 PF03601 BF28_514 BF28_5140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BF28_5140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BF28_5140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BF28_5141 PF00535 Glycosyl transferase family 2 BF28_5145 PF00144 Beta-lactamase BF28_5146 PF00367 phosphotransferase system, EIIB BF28_5146 PF02378 Phosphotransferase system, EIIC BF28_5147 PF04960 Glutaminase BF28_5148 PF13108 BF28_5148 BF28_515 PF01381 Helix-turn-helix BF28_5150 PF02659 BF28_5150 BF28_5151 PF01381 Helix-turn-helix BF28_5151 PF06803 BF28_5151 BF28_5152 PF01546 Peptidase family M20/M25/M40 BF28_5152 PF07687 Peptidase dimerisation domain BF28_5153 PF00324 Amino acid permease BF28_5154 PF00364 Biotin-requiring enzyme BF28_5155 PF00158 Sigma-54 interaction domain BF28_5155 PF02954 Bacterial regulatory protein, Fis family BF28_5157 PF01416 tRNA pseudouridine synthase BF28_5158 PF01938 TRAM domain BF28_5158 PF05958 tRNA (Uracil-5-)-methyltransferase BF28_5159 PF00730 HhH-GPD superfamily base excision DNA repair protein BF28_5160 PF01522 Polysaccharide deacetylase BF28_5161 PF05681 BF28_5161 BF28_5161 PF05683 Fumarase C-terminus BF28_5163 PF04055 Radical SAM superfamily BF28_5163 PF08756 BF28_5163 BF28_5163 PF13353 4Fe-4S single cluster domain BF28_5164 PF14167 BF28_5164 BF28_5165 PF01699 Sodium/calcium exchanger protein BF28_5166 PF16242 BF28_5166 BF28_5168 PF00892 EamA-like transporter family BF28_5169 PF09335 BF28_5169 BF28_5171 PF00717 Peptidase S24-like BF28_5172 PF07947 BF28_5172 BF28_5173 PF00892 EamA-like transporter family BF28_5174 PF00122 E1-E2 ATPase BF28_5174 PF00702 haloacid dehalogenase-like hydrolase BF28_5175 PF03631 BF28_5175 BF28_5176 PF13294 BF28_5176 BF28_5177 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF28_5178 PF06569 BF28_5178 BF28_5179 PF00122 E1-E2 ATPase BF28_5179 PF00689 Cation transporting ATPase, C-terminus BF28_5179 PF00690 Cation transporter/ATPase, N-terminus BF28_5179 PF00702 haloacid dehalogenase-like hydrolase BF28_5180 PF05816 BF28_5180 BF28_5181 PF14266 BF28_5181 BF28_5182 PF03741 BF28_5182 BF28_5183 PF02342 TerD domain BF28_5184 PF02342 TerD domain BF28_5185 PF02342 TerD domain BF28_5186 PF00480 ROK family BF28_5188 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_5188 PF03129 Anticodon binding domain BF28_5188 PF09180 Prolyl-tRNA synthetase, C-terminal BF28_5189 PF14150 BF28_5189 BF28_5190 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase BF28_5191 PF11700 BF28_5191 BF28_5193 PF01381 Helix-turn-helix BF28_5194 PF05977 Transmembrane secretion effector BF28_5195 PF00440 Bacterial regulatory proteins, tetR family BF28_5195 PF08360 QacR-like protein, C-terminal region BF28_5197 PF00085 Thioredoxin BF28_5198 PF09350 BF28_5198 BF28_5199 PF00041 Fibronectin type III domain BF28_5199 PF00553 Cellulose binding domain BF28_5199 PF00704 Glycosyl hydrolases family 18 BF28_52 PF00189 Ribosomal protein S3, C-terminal domain BF28_52 PF07650 KH domain BF28_520 PF13411 MerR HTH family regulatory protein BF28_5200 PF00005 ABC transporter BF28_5200 PF12848 ABC transporter BF28_5202 PF00005 ABC transporter BF28_5203 PF09084 NMT1/THI5 like BF28_5204 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5205 PF01910 Domain of unknown function DUF77 BF28_5206 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5207 PF03605 BF28_5207 BF28_5208 PF11288 BF28_5208 BF28_5209 PF02581 Thiamine monophosphate synthase/TENI BF28_5210 PF02110 Hydroxyethylthiazole kinase family BF28_5211 PF01131 DNA topoisomerase BF28_5211 PF01751 Toprim domain BF28_5212 PF01061 BF28_5212 BF28_5212 PF12698 ABC-2 family transporter protein BF28_5213 PF03372 Endonuclease/Exonuclease/phosphatase family BF28_5214 PF00367 phosphotransferase system, EIIB BF28_5214 PF02378 Phosphotransferase system, EIIC BF28_5215 PF00128 Alpha amylase, catalytic domain BF28_5215 PF16657 BF28_5215 BF28_5216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5216 PF00672 HAMP domain BF28_5217 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5217 PF12729 BF28_5217 BF28_5218 PF00005 ABC transporter BF28_5219 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF28_522 PF00271 Helicase conserved C-terminal domain BF28_522 PF02151 UvrB/uvrC motif BF28_522 PF04851 Type III restriction enzyme, res subunit BF28_522 PF12344 Ultra-violet resistance protein B BF28_5220 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5221 PF00487 BF28_5221 BF28_5222 PF00355 Rieske [2Fe-2S] domain BF28_5222 PF01266 FAD dependent oxidoreductase BF28_5223 PF07690 Major Facilitator Superfamily BF28_5224 PF10127 BF28_5224 BF28_5227 PF04199 Putative cyclase BF28_523 PF00005 ABC transporter BF28_5235 PF12728 Helix-turn-helix domain BF28_5237 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5238 PF01497 Periplasmic binding protein BF28_5239 PF01032 FecCD transport family BF28_524 PF14101 BF28_524 BF28_5240 PF01032 FecCD transport family BF28_5241 PF00596 Class II Aldolase and Adducin N-terminal domain BF28_5242 PF01008 Initiation factor 2 subunit family BF28_5243 PF01636 Phosphotransferase enzyme family BF28_5244 PF00578 AhpC/TSA family BF28_5244 PF10417 C-terminal domain of 1-Cys peroxiredoxin BF28_5245 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5245 PF13192 Thioredoxin domain BF28_5246 PF13679 BF28_5246 BF28_5247 PF01546 Peptidase family M20/M25/M40 BF28_5247 PF07687 Peptidase dimerisation domain BF28_5249 PF03553 BF28_5249 BF28_525 PF04020 BF28_525 BF28_5250 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF28_5250 PF13378 Enolase C-terminal domain-like BF28_5252 PF01863 Protein of unknown function DUF45 BF28_5253 PF07308 BF28_5253 BF28_5254 PF00512 His Kinase A (phospho-acceptor) domain BF28_5254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5254 PF08448 PAS fold BF28_5254 PF13185 GAF domain BF28_5255 PF01207 Dihydrouridine synthase (Dus) BF28_5256 PF01938 TRAM domain BF28_5256 PF02475 Met-10+ like-protein BF28_5256 PF05958 tRNA (Uracil-5-)-methyltransferase BF28_5257 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_5257 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_5258 PF01522 Polysaccharide deacetylase BF28_5259 PF01522 Polysaccharide deacetylase BF28_526 PF02603 HPr Serine kinase N terminus BF28_526 PF07475 HPr Serine kinase C-terminal domain BF28_5260 PF02073 Thermophilic metalloprotease (M29) BF28_5261 PF00893 Small Multidrug Resistance protein BF28_5262 PF00171 Aldehyde dehydrogenase family BF28_5263 PF00158 Sigma-54 interaction domain BF28_5263 PF13426 PAS domain BF28_5264 PF00202 Aminotransferase class-III BF28_5265 PF13419 Haloacid dehalogenase-like hydrolase BF28_5266 PF02353 Mycolic acid cyclopropane synthetase BF28_5267 PF00781 Diacylglycerol kinase catalytic domain BF28_5268 PF02637 GatB domain BF28_5268 PF02934 GatB/GatE catalytic domain BF28_5269 PF01425 Amidase BF28_527 PF01790 BF28_527 BF28_5270 PF02686 Glu-tRNAGln amidotransferase C subunit BF28_5271 PF05360 BF28_5271 BF28_5272 PF01047 MarR family BF28_5273 PF02374 Anion-transporting ATPase BF28_5274 PF13080 BF28_5274 BF28_5275 PF13787 BF28_5275 BF28_5276 PF03180 NLPA lipoprotein BF28_5277 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5278 PF00005 ABC transporter BF28_5278 PF09383 NIL domain BF28_5279 PF00857 Isochorismatase family BF28_528 PF13419 Haloacid dehalogenase-like hydrolase BF28_5281 PF00171 Aldehyde dehydrogenase family BF28_5282 PF01925 BF28_5282 BF28_5283 PF07537 CamS sex pheromone cAM373 precursor BF28_5284 PF00533 BRCA1 C Terminus (BRCT) domain BF28_5284 PF01653 NAD-dependent DNA ligase adenylation domain BF28_5284 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF28_5284 PF03120 NAD-dependent DNA ligase OB-fold domain BF28_5284 PF12826 Helix-hairpin-helix motif BF28_5284 PF14520 Helix-hairpin-helix domain BF28_5285 PF00580 UvrD/REP helicase N-terminal domain BF28_5285 PF13361 UvrD-like helicase C-terminal domain BF28_5286 PF01884 PcrB family BF28_5287 PF11127 Protein of unknown function (DUF2892) BF28_5288 PF01145 SPFH domain / Band 7 family BF28_5289 PF05534 BF28_5289 BF28_529 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_5290 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF28_5290 PF02843 Phosphoribosylglycinamide synthetase, C domain BF28_5290 PF02844 Phosphoribosylglycinamide synthetase, N domain BF28_5291 PF01808 AICARFT/IMPCHase bienzyme BF28_5291 PF02142 MGS-like domain BF28_5292 PF00551 Formyl transferase BF28_5293 PF00586 AIR synthase related protein, N-terminal domain BF28_5293 PF02769 AIR synthase related protein, C-terminal domain BF28_5294 PF00156 Phosphoribosyl transferase domain BF28_5294 PF13537 Glutamine amidotransferase domain BF28_5295 PF00586 AIR synthase related protein, N-terminal domain BF28_5295 PF02769 AIR synthase related protein, C-terminal domain BF28_5296 PF13507 CobB/CobQ-like glutamine amidotransferase domain BF28_5297 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BF28_5298 PF01259 SAICAR synthetase BF28_5299 PF00206 Lyase BF28_5299 PF10397 Adenylosuccinate lyase C-terminus BF28_53 PF00237 Ribosomal protein L22p/L17e BF28_530 PF13432 Tetratricopeptide repeat BF28_5300 PF02222 ATP-grasp domain BF28_5300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF28_5301 PF00731 AIR carboxylase BF28_5302 PF00731 AIR carboxylase BF28_5307 PF03567 Sulfotransferase family BF28_5308 PF00892 EamA-like transporter family BF28_531 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5312 PF00072 Response regulator receiver domain BF28_5312 PF00486 Transcriptional regulatory protein, C terminal BF28_5313 PF00512 His Kinase A (phospho-acceptor) domain BF28_5313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5314 PF00005 ABC transporter BF28_5315 PF12730 BF28_5315 BF28_5316 PF02673 BF28_5316 BF28_532 PF04018 BF28_532 BF28_5321 PF01370 NAD dependent epimerase/dehydratase family BF28_5326 PF01323 DSBA-like thioredoxin domain BF28_5327 PF12146 Putative lysophospholipase BF28_533 PF00293 NUDIX domain BF28_5332 PF00512 His Kinase A (phospho-acceptor) domain BF28_5332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_5333 PF00072 Response regulator receiver domain BF28_5333 PF00486 Transcriptional regulatory protein, C terminal BF28_5334 PF00860 Permease family BF28_5335 PF00117 Glutamine amidotransferase class-I BF28_5335 PF00958 GMP synthase C terminal domain BF28_5335 PF02540 NAD synthase BF28_5336 PF14568 SMI1-KNR4 cell-wall BF28_5338 PF00118 TCP-1/cpn60 chaperonin family BF28_5339 PF00166 Chaperonin 10 Kd subunit BF28_534 PF03668 BF28_534 BF28_5340 PF02517 CAAX protease self-immunity BF28_5341 PF14146 BF28_5341 BF28_5342 PF02629 CoA binding domain BF28_5342 PF06971 Putative DNA-binding protein N-terminus BF28_5343 PF00005 ABC transporter BF28_5343 PF12848 ABC transporter BF28_5343 PF16326 BF28_5343 BF28_5344 PF00814 Glycoprotease family BF28_5345 PF00583 Acetyltransferase (GNAT) family BF28_5346 PF00814 Glycoprotease family BF28_5347 PF02367 Uncharacterised P-loop hydrolase UPF0079 BF28_535 PF01933 Uncharacterised protein family UPF0052 BF28_536 PF02650 WhiA C-terminal HTH domain BF28_536 PF10298 WhiA N-terminal LAGLIDADG-like domain BF28_536 PF14527 WhiA LAGLIDADG-like domain BF28_5365 PF10263 BF28_5365 BF28_5365 PF17283 BF28_5365 BF28_5366 PF00575 S1 RNA binding domain BF28_5366 PF09371 Tex-like protein N-terminal domain BF28_5366 PF12836 Helix-hairpin-helix motif BF28_5366 PF16921 BF28_5366 BF28_5367 PF02452 PemK-like protein BF28_5369 PF00842 Alanine racemase, C-terminal domain BF28_5369 PF01168 Alanine racemase, N-terminal domain BF28_537 PF00381 PTS HPr component phosphorylation site BF28_5371 PF01648 4'-phosphopantetheinyl transferase superfamily BF28_5372 PF03851 UV-endonuclease UvdE BF28_5373 PF01694 Rhomboid family BF28_5374 PF00270 DEAD/DEAH box helicase BF28_5374 PF00271 Helicase conserved C-terminal domain BF28_5375 PF01225 Mur ligase family, catalytic domain BF28_5375 PF02875 Mur ligase family, glutamate ligase domain BF28_5375 PF08245 Mur ligase middle domain BF28_5376 PF01820 D-ala D-ala ligase N-terminus BF28_5376 PF07478 D-ala D-ala ligase C-terminus BF28_5377 PF07690 Major Facilitator Superfamily BF28_5378 PF04209 homogentisate 1,2-dioxygenase BF28_5379 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF28_538 PF00574 Clp protease BF28_5380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5380 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal BF28_5381 PF13134 BF28_5381 BF28_5382 PF13134 BF28_5382 BF28_5383 PF13134 BF28_5383 BF28_5384 PF13134 BF28_5384 BF28_5385 PF13134 BF28_5385 BF28_5386 PF08282 haloacid dehalogenase-like hydrolase BF28_5387 PF00005 ABC transporter BF28_5387 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5388 PF00005 ABC transporter BF28_5388 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5389 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5389 PF12911 BF28_5389 BF28_539 PF04239 Protein of unknown function (DUF421) BF28_539 PF07870 BF28_539 BF28_5390 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5391 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5395 PF00005 ABC transporter BF28_5395 PF12848 ABC transporter BF28_5397 PF16285 BF28_5397 BF28_5398 PF01464 Transglycosylase SLT domain BF28_5399 PF10096 BF28_5399 BF28_54 PF00203 Ribosomal protein S19 BF28_540 PF07870 BF28_540 BF28_5400 PF16472 BF28_5400 BF28_5400 PF16800 BF28_5400 BF28_5401 PF01026 TatD related DNase BF28_5403 PF06486 Protein of unknown function (DUF1093) BF28_5404 PF02588 BF28_5404 BF28_5404 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_5405 PF14470 Bacterial PH domain BF28_5406 PF00356 Bacterial regulatory proteins, lacI family BF28_5406 PF13377 Periplasmic binding protein-like domain BF28_5408 PF01553 Acyltransferase BF28_5409 PF13134 BF28_5409 BF28_541 PF03862 BF28_541 BF28_5410 PF14142 BF28_5410 BF28_5411 PF00892 EamA-like transporter family BF28_5412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_5412 PF03466 LysR substrate binding domain BF28_5414 PF13134 BF28_5414 BF28_5415 PF12727 PBP superfamily domain BF28_5415 PF12728 Helix-turn-helix domain BF28_5416 PF13531 Bacterial extracellular solute-binding protein BF28_5417 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5418 PF06800 BF28_5418 BF28_5419 PF04973 BF28_5419 BF28_542 PF07451 Stage V sporulation protein AD (SpoVAD) BF28_5421 PF03807 NADP oxidoreductase coenzyme F420-dependent BF28_5421 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF28_5422 PF00248 Aldo/keto reductase family BF28_5423 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5424 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5425 PF12698 ABC-2 family transporter protein BF28_5426 PF00440 Bacterial regulatory proteins, tetR family BF28_5428 PF12833 Helix-turn-helix domain BF28_5429 PF14039 BF28_5429 BF28_543 PF03862 BF28_543 BF28_5430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF28_5431 PF00005 ABC transporter BF28_5431 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5432 PF00005 ABC transporter BF28_5432 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF28_5433 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5433 PF12911 BF28_5433 BF28_5434 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5435 PF13131 BF28_5435 BF28_5437 PF07690 Major Facilitator Superfamily BF28_5438 PF13139 BF28_5438 BF28_5439 PF07690 Major Facilitator Superfamily BF28_5440 PF01565 FAD binding domain BF28_5440 PF04030 D-arabinono-1,4-lactone oxidase BF28_5442 PF00107 Zinc-binding dehydrogenase BF28_5442 PF08240 Alcohol dehydrogenase GroES-like domain BF28_5443 PF03180 NLPA lipoprotein BF28_5444 PF00005 ABC transporter BF28_5444 PF09383 NIL domain BF28_5445 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5446 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_5447 PF16781 BF28_5447 BF28_5448 PF04542 Sigma-70 region 2 BF28_5448 PF08281 Sigma-70, region 4 BF28_5449 PF13791 BF28_5449 BF28_5449 PF13800 BF28_5449 BF28_545 PF07870 BF28_545 BF28_5450 PF07681 BF28_5450 BF28_5451 PF14066 BF28_5451 BF28_5452 PF00326 Prolyl oligopeptidase family BF28_5452 PF07676 WD40-like Beta Propeller Repeat BF28_5453 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF28_5453 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF28_5454 PF02447 BF28_5454 BF28_5455 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF28_5455 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF28_5456 PF00392 Bacterial regulatory proteins, gntR family BF28_5456 PF07729 FCD domain BF28_5457 PF00561 alpha/beta hydrolase fold BF28_5458 PF01380 SIS domain BF28_5458 PF13522 Glutamine amidotransferase domain BF28_5459 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF28_5459 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF28_5459 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF28_5459 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF28_5461 PF01385 BF28_5461 BF28_5461 PF07282 BF28_5461 BF28_5462 PF12323 BF28_5462 BF28_5463 PF13519 von Willebrand factor type A domain BF28_5464 PF01131 DNA topoisomerase BF28_5464 PF13342 BF28_5464 BF28_5465 PF01131 DNA topoisomerase BF28_5466 PF01131 DNA topoisomerase BF28_5466 PF01751 Toprim domain BF28_5471 PF00155 Aminotransferase class I and II BF28_5473 PF10087 BF28_5473 BF28_5474 PF13177 DNA polymerase III, delta subunit BF28_5479 PF13518 Helix-turn-helix domain BF28_5480 PF00665 Integrase core domain BF28_5480 PF13276 BF28_5480 BF28_5481 PF04962 KduI/IolB family BF28_5482 PF01116 Fructose-bisphosphate aldolase class-II BF28_5483 PF00356 Bacterial regulatory proteins, lacI family BF28_5483 PF13377 Periplasmic binding protein-like domain BF28_5484 PF01261 Xylose isomerase-like TIM barrel BF28_5485 PF00205 Thiamine pyrophosphate enzyme, central domain BF28_5485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_5485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_5486 PF00171 Aldehyde dehydrogenase family BF28_5487 PF00294 pfkB family carbohydrate kinase BF28_5488 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_5488 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_5489 PF07690 Major Facilitator Superfamily BF28_549 PF14412 BF28_549 BF28_5490 PF00356 Bacterial regulatory proteins, lacI family BF28_5490 PF13377 Periplasmic binding protein-like domain BF28_5491 PF00356 Bacterial regulatory proteins, lacI family BF28_5491 PF13377 Periplasmic binding protein-like domain BF28_5492 PF00083 Sugar (and other) transporter BF28_5493 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_5493 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF28_5498 PF00665 Integrase core domain BF28_5498 PF13276 BF28_5498 BF28_5499 PF01527 Transposase BF28_55 PF00181 Ribosomal Proteins L2, RNA binding domain BF28_55 PF03947 Ribosomal Proteins L2, C-terminal domain BF28_5503 PF07366 SnoaL-like polyketide cyclase BF28_5504 PF12680 SnoaL-like domain BF28_5505 PF00753 Metallo-beta-lactamase superfamily BF28_5506 PF01323 DSBA-like thioredoxin domain BF28_5510 PF00041 Fibronectin type III domain BF28_5510 PF03067 Chitin binding domain BF28_5513 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF28_5515 PF01385 BF28_5515 BF28_5515 PF07282 BF28_5515 BF28_5515 PF12323 BF28_5515 BF28_5517 PF01934 Protein of unknown function DUF86 BF28_5518 PF01909 Nucleotidyltransferase domain BF28_5519 PF04657 BF28_5519 BF28_552 PF00309 BF28_552 BF28_552 PF04552 Sigma-54, DNA binding domain BF28_552 PF04963 Sigma-54 factor, core binding domain BF28_5521 PF01180 Dihydroorotate dehydrogenase BF28_5524 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5524 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BF28_5525 PF13419 Haloacid dehalogenase-like hydrolase BF28_5526 PF01588 Putative tRNA binding domain BF28_5527 PF00892 EamA-like transporter family BF28_5529 PF00293 NUDIX domain BF28_553 PF05768 Glutaredoxin-like domain (DUF836) BF28_5539 PF12728 Helix-turn-helix domain BF28_554 PF04198 Putative sugar-binding domain BF28_5541 PF01548 BF28_5541 BF28_5541 PF02371 BF28_5541 BF28_5542 PF04229 GrpB protein BF28_5543 PF02016 LD-carboxypeptidase BF28_5544 PF04002 RadC-like JAB domain BF28_5547 PF00575 S1 RNA binding domain BF28_555 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_555 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF28_5555 PF00877 NlpC/P60 family BF28_5555 PF13702 Lysozyme-like BF28_5558 PF12846 AAA-like domain BF28_5559 PF12648 BF28_5559 BF28_556 PF00162 Phosphoglycerate kinase BF28_5561 PF12642 Conjugative transposon protein TcpC BF28_5566 PF14435 BF28_5566 BF28_5567 PF12696 TraM recognition site of TraD and TraG BF28_557 PF00121 Triosephosphate isomerase BF28_5572 PF00091 Tubulin/FtsZ family, GTPase domain BF28_5574 PF12965 BF28_5574 BF28_5576 PF04542 Sigma-70 region 2 BF28_5576 PF04545 Sigma-70, region 4 BF28_558 PF01676 Metalloenzyme superfamily BF28_558 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF28_5582 PF00717 Peptidase S24-like BF28_5586 PF14074 BF28_5586 BF28_559 PF00113 Enolase, C-terminal TIM barrel domain BF28_559 PF03952 Enolase, N-terminal domain BF28_5591 PF12796 Ankyrin repeats (3 copies) BF28_5591 PF13857 Ankyrin repeats (many copies) BF28_5592 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF28_5592 PF08388 BF28_5592 BF28_5592 PF13655 BF28_5592 BF28_5593 PF13518 Helix-turn-helix domain BF28_5594 PF00665 Integrase core domain BF28_5594 PF13276 BF28_5594 BF28_5596 PF07972 NrdI Flavodoxin like BF28_56 PF00276 Ribosomal protein L23 BF28_560 PF01156 Inosine-uridine preferring nucleoside hydrolase BF28_5601 PF12650 BF28_5601 BF28_5604 PF10676 BF28_5604 BF28_5605 PF06356 BF28_5605 BF28_5608 PF01385 BF28_5608 BF28_5608 PF07282 BF28_5608 BF28_5608 PF12323 BF28_5608 BF28_561 PF03788 BF28_561 BF28_5611 PF01385 BF28_5611 BF28_5611 PF07282 BF28_5611 BF28_5611 PF12323 BF28_5611 BF28_5616 PF12784 BF28_5616 BF28_5617 PF09335 BF28_5617 BF28_5618 PF13273 BF28_5618 BF28_5619 PF00072 Response regulator receiver domain BF28_5619 PF00486 Transcriptional regulatory protein, C terminal BF28_562 PF04172 BF28_562 BF28_5620 PF01522 Polysaccharide deacetylase BF28_5621 PF04914 DltD C-terminal region BF28_5626 PF13073 BF28_5626 BF28_5627 PF00589 Phage integrase family BF28_5628 PF06713 BF28_5628 BF28_5629 PF01381 Helix-turn-helix BF28_563 PF03840 Preprotein translocase SecG subunit BF28_5630 PF12197 Bacillus cereus group antimicrobial protein BF28_5633 PF01381 Helix-turn-helix BF28_5634 PF00746 BF28_5634 BF28_5634 PF05901 BF28_5634 BF28_5635 PF04203 Sortase family BF28_5638 PF01638 HxlR-like helix-turn-helix BF28_5639 PF00925 GTP cyclohydrolase II BF28_564 PF12146 Putative lysophospholipase BF28_5640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_5640 PF01872 RibD C-terminal domain BF28_5642 PF13053 BF28_5642 BF28_5643 PF12840 Helix-turn-helix domain BF28_5644 PF01476 LysM domain BF28_5644 PF07486 Cell Wall Hydrolase BF28_5645 PF00801 PKD domain BF28_5645 PF01752 Collagenase BF28_5645 PF04151 Bacterial pre-peptidase C-terminal domain BF28_5645 PF08453 Peptidase family M9 N-terminal BF28_5646 PF07485 BF28_5646 BF28_5648 PF12784 BF28_5648 BF28_565 PF00575 S1 RNA binding domain BF28_565 PF00773 RNB domain BF28_565 PF08206 Ribonuclease B OB domain BF28_5650 PF13402 Peptidase M60-like family BF28_5651 PF03323 BF28_5651 BF28_5652 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_5654 PF03845 BF28_5654 BF28_5655 PF03845 BF28_5655 BF28_5656 PF00732 GMC oxidoreductase BF28_5656 PF05199 GMC oxidoreductase BF28_566 PF01668 SmpB protein BF28_5661 PF01385 BF28_5661 BF28_5663 PF04239 Protein of unknown function (DUF421) BF28_5664 PF13529 Peptidase_C39 like family BF28_5665 PF12146 Putative lysophospholipase BF28_5667 PF09997 BF28_5667 BF28_5669 PF11167 BF28_5669 BF28_567 PF00072 Response regulator receiver domain BF28_567 PF00486 Transcriptional regulatory protein, C terminal BF28_5673 PF12146 Putative lysophospholipase BF28_5675 PF17209 BF28_5675 BF28_5676 PF01609 Transposase DDE domain BF28_5678 PF01609 Transposase DDE domain BF28_568 PF01497 Periplasmic binding protein BF28_5680 PF07690 Major Facilitator Superfamily BF28_5681 PF12840 Helix-turn-helix domain BF28_569 PF01032 FecCD transport family BF28_5690 PF03838 Recombination protein U BF28_5691 PF10782 BF28_5691 BF28_5692 PF08281 Sigma-70, region 4 BF28_5694 PF12197 Bacillus cereus group antimicrobial protein BF28_5695 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5695 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5696 PF00144 Beta-lactamase BF28_5697 PF00144 Beta-lactamase BF28_5699 PF12146 Putative lysophospholipase BF28_57 PF00573 Ribosomal protein L4/L1 family BF28_570 PF01032 FecCD transport family BF28_5702 PF00854 POT family BF28_5703 PF13255 BF28_5703 BF28_5704 PF01385 BF28_5704 BF28_5704 PF07282 BF28_5704 BF28_5704 PF12323 BF28_5704 BF28_5705 PF00155 Aminotransferase class I and II BF28_5705 PF00392 Bacterial regulatory proteins, gntR family BF28_5706 PF00892 EamA-like transporter family BF28_5708 PF01270 Glycosyl hydrolases family 8 BF28_5709 PF12639 DNase/tRNase domain of colicin-like bacteriocin BF28_571 PF00005 ABC transporter BF28_5710 PF14568 SMI1-KNR4 cell-wall BF28_5711 PF12870 Lumazine-binding domain BF28_5712 PF00144 Beta-lactamase BF28_5714 PF01522 Polysaccharide deacetylase BF28_5718 PF00395 S-layer homology domain BF28_5718 PF01473 Putative cell wall binding repeat BF28_5720 PF01494 FAD binding domain BF28_5721 PF00440 Bacterial regulatory proteins, tetR family BF28_5722 PF00239 Resolvase, N terminal domain BF28_5722 PF02796 Helix-turn-helix domain of resolvase BF28_5723 PF00665 Integrase core domain BF28_5723 PF09299 Mu transposase, C-terminal BF28_5723 PF13518 Helix-turn-helix domain BF28_5724 PF13401 AAA domain BF28_5725 PF01609 Transposase DDE domain BF28_5726 PF01526 BF28_5726 BF28_5726 PF13700 BF28_5726 BF28_5727 PF00239 Resolvase, N terminal domain BF28_5727 PF02796 Helix-turn-helix domain of resolvase BF28_5728 PF00440 Bacterial regulatory proteins, tetR family BF28_5729 PF07690 Major Facilitator Superfamily BF28_573 PF01047 MarR family BF28_5730 PF02687 BF28_5730 BF28_5731 PF00005 ABC transporter BF28_5732 PF13302 Acetyltransferase (GNAT) domain BF28_5733 PF01609 Transposase DDE domain BF28_5734 PF00144 Beta-lactamase BF28_5737 PF14449 BF28_5737 BF28_5739 PF12728 Helix-turn-helix domain BF28_574 PF16103 BF28_574 BF28_5740 PF00589 Phage integrase family BF28_5743 PF01385 BF28_5743 BF28_5744 PF00665 Integrase core domain BF28_5744 PF13276 BF28_5744 BF28_5745 PF13333 BF28_5745 BF28_5747 PF06966 BF28_5747 BF28_5748 PF00440 Bacterial regulatory proteins, tetR family BF28_5749 PF00665 Integrase core domain BF28_575 PF08378 BF28_575 BF28_5750 PF02028 BCCT family transporter BF28_5753 PF01385 BF28_5753 BF28_5753 PF07282 BF28_5753 BF28_5753 PF12323 BF28_5753 BF28_5755 PF01609 Transposase DDE domain BF28_5759 PF00589 Phage integrase family BF28_5759 PF02899 Phage integrase, N-terminal SAM-like domain BF28_576 PF06146 BF28_576 BF28_5762 PF13700 BF28_5762 BF28_5767 PF01943 BF28_5767 BF28_5768 PF00528 Binding-protein-dependent transport system inner membrane component BF28_5769 PF00528 Binding-protein-dependent transport system inner membrane component BF28_577 PF13302 Acetyltransferase (GNAT) domain BF28_5774 PF00005 ABC transporter BF28_5774 PF00664 ABC transporter transmembrane region BF28_5774 PF03412 Peptidase C39 family BF28_5775 PF00085 Thioredoxin BF28_5776 PF02600 Disulfide bond formation protein DsbB BF28_5777 PF00589 Phage integrase family BF28_5777 PF13495 Phage integrase, N-terminal SAM-like domain BF28_5779 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5779 PF00672 HAMP domain BF28_5779 PF02743 Cache domain BF28_578 PF13127 BF28_578 BF28_5782 PF14470 Bacterial PH domain BF28_5783 PF00929 Exonuclease BF28_5784 PF00746 BF28_5784 BF28_579 PF13135 BF28_579 BF28_5795 PF00239 Resolvase, N terminal domain BF28_5795 PF02796 Helix-turn-helix domain of resolvase BF28_5797 PF01391 Collagen triple helix repeat (20 copies) BF28_5798 PF06197 BF28_5798 BF28_58 PF00297 Ribosomal protein L3 BF28_580 PF02537 BF28_580 BF28_5800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF28_5801 PF09643 YopX protein BF28_5804 PF12677 BF28_5804 BF28_5806 PF08761 dUTPase BF28_581 PF02537 BF28_581 BF28_5812 PF13228 BF28_5812 BF28_5815 PF01609 Transposase DDE domain BF28_5816 PF10049 BF28_5816 BF28_5820 PF10782 BF28_5820 BF28_5826 PF01385 BF28_5826 BF28_5826 PF07282 BF28_5826 BF28_5826 PF12323 BF28_5826 BF28_5827 PF03831 PhnA protein BF28_5827 PF08274 PhnA Zinc-Ribbon BF28_5828 PF00550 Phosphopantetheine attachment site BF28_583 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_583 PF13295 BF28_583 BF28_5830 PF00916 BF28_5830 BF28_5830 PF01740 STAS domain BF28_5832 PF12840 Helix-turn-helix domain BF28_5835 PF00535 Glycosyl transferase family 2 BF28_5838 PF01609 Transposase DDE domain BF28_584 PF00856 SET domain BF28_5841 PF01609 Transposase DDE domain BF28_5842 PF12676 BF28_5842 BF28_5843 PF01381 Helix-turn-helix BF28_5846 PF12844 Helix-turn-helix domain BF28_5848 PF11611 Domain of unknown function (DUF4352) BF28_5849 PF13273 BF28_5849 BF28_585 PF01565 FAD binding domain BF28_585 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF28_5850 PF11611 Domain of unknown function (DUF4352) BF28_5851 PF01609 Transposase DDE domain BF28_5853 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF28_5853 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF28_5855 PF02660 BF28_5855 BF28_5857 PF02567 Phenazine biosynthesis-like protein BF28_5858 PF07690 Major Facilitator Superfamily BF28_5859 PF00881 Nitroreductase family BF28_586 PF00579 tRNA synthetases class I (W and Y) BF28_586 PF01479 S4 domain BF28_5860 PF00589 Phage integrase family BF28_5862 PF01609 Transposase DDE domain BF28_5864 PF04239 Protein of unknown function (DUF421) BF28_5864 PF07870 BF28_5864 BF28_5865 PF07870 BF28_5865 BF28_5866 PF03862 BF28_5866 BF28_5867 PF07870 BF28_5867 BF28_5868 PF01385 BF28_5868 BF28_5868 PF07282 BF28_5868 BF28_587 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_5870 PF07452 BF28_5870 BF28_5871 PF01385 BF28_5871 BF28_5871 PF07282 BF28_5871 BF28_5871 PF12323 BF28_5871 BF28_5873 PF11167 BF28_5873 BF28_5874 PF01569 PAP2 superfamily BF28_588 PF07849 BF28_588 BF28_5881 PF04101 Glycosyltransferase family 28 C-terminal domain BF28_5881 PF06925 BF28_5881 BF28_5882 PF01385 BF28_5882 BF28_5882 PF07282 BF28_5882 BF28_5882 PF12323 BF28_5882 BF28_5883 PF00149 Calcineurin-like phosphoesterase BF28_5886 PF07870 BF28_5886 BF28_5889 PF08241 Methyltransferase domain BF28_589 PF01638 HxlR-like helix-turn-helix BF28_5891 PF13279 Thioesterase-like superfamily BF28_5892 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF28_5892 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF28_5893 PF05853 Prokaryotic protein of unknown function (DUF849) BF28_5896 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5896 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5896 PF03413 Peptidase propeptide and YPEB domain BF28_5896 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_5897 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5897 PF00672 HAMP domain BF28_5897 PF12729 BF28_5897 BF28_59 PF00338 Ribosomal protein S10p/S20e BF28_590 PF07690 Major Facilitator Superfamily BF28_5900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_5900 PF13426 PAS domain BF28_5901 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_5901 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_5901 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_5904 PF12385 BF28_5904 BF28_5906 PF06772 BF28_5906 BF28_5907 PF00881 Nitroreductase family BF28_5908 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_5909 PF06800 BF28_5909 BF28_591 PF00248 Aldo/keto reductase family BF28_5910 PF02230 Phospholipase/Carboxylesterase BF28_5911 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5912 PF01613 Flavin reductase like domain BF28_5913 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF28_5914 PF01047 MarR family BF28_5916 PF07690 Major Facilitator Superfamily BF28_5917 PF01047 MarR family BF28_5918 PF01609 Transposase DDE domain BF28_5919 PF00107 Zinc-binding dehydrogenase BF28_5919 PF08240 Alcohol dehydrogenase GroES-like domain BF28_5920 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BF28_5920 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BF28_5921 PF00288 GHMP kinases N terminal domain BF28_5921 PF08544 GHMP kinases C terminal BF28_5921 PF10509 Galactokinase galactose-binding signature BF28_5922 PF01263 Aldose 1-epimerase BF28_5923 PF02311 AraC-like ligand binding domain BF28_5923 PF12833 Helix-turn-helix domain BF28_5924 PF02278 Polysaccharide lyase family 8, super-sandwich domain BF28_5924 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain BF28_5924 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain BF28_5925 PF01301 Glycosyl hydrolases family 35 BF28_5926 PF07470 Glycosyl Hydrolase Family 88 BF28_5927 PF03830 PTS system sorbose subfamily IIB component BF28_5928 PF03613 BF28_5928 BF28_5929 PF03609 BF28_5929 BF28_593 PF03272 BF28_593 BF28_593 PF13402 Peptidase M60-like family BF28_593 PF17291 BF28_593 BF28_5930 PF03610 PTS system fructose IIA component BF28_5931 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_5932 PF04962 KduI/IolB family BF28_5933 PF00294 pfkB family carbohydrate kinase BF28_5934 PF01081 KDPG and KHG aldolase BF28_5935 PF01614 Bacterial transcriptional regulator BF28_5935 PF09339 IclR helix-turn-helix domain BF28_5936 PF13159 BF28_5936 BF28_5937 PF04307 BF28_5937 BF28_5939 PF13424 Tetratricopeptide repeat BF28_594 PF13460 NADH(P)-binding BF28_5940 PF01385 BF28_5940 BF28_5940 PF07282 BF28_5940 BF28_5940 PF12323 BF28_5940 BF28_5942 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase BF28_5943 PF06445 GyrI-like small molecule binding domain BF28_5943 PF13411 MerR HTH family regulatory protein BF28_5944 PF08863 BF28_5944 BF28_5946 PF00665 Integrase core domain BF28_5946 PF13276 BF28_5946 BF28_595 PF01235 BF28_595 BF28_5950 PF13614 AAA domain BF28_5955 PF13152 BF28_5955 BF28_5955 PF13411 MerR HTH family regulatory protein BF28_5956 PF04970 Lecithin retinol acyltransferase BF28_596 PF01235 BF28_596 BF28_5960 PF01580 FtsK/SpoIIIE family BF28_5962 PF01381 Helix-turn-helix BF28_5963 PF01526 BF28_5963 BF28_5964 PF14022 BF28_5964 BF28_5966 PF02517 CAAX protease self-immunity BF28_5967 PF01526 BF28_5967 BF28_5969 PF00589 Phage integrase family BF28_597 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_597 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_597 PF07670 Nucleoside recognition BF28_5972 PF00515 Tetratricopeptide repeat BF28_5973 PF04014 Antidote-toxin recognition MazE BF28_5975 PF01381 Helix-turn-helix BF28_5976 PF01609 Transposase DDE domain BF28_5979 PF00665 Integrase core domain BF28_5979 PF13276 BF28_5979 BF28_598 PF01773 Na+ dependent nucleoside transporter N-terminus BF28_598 PF07662 Na+ dependent nucleoside transporter C-terminus BF28_5981 PF00817 impB/mucB/samB family BF28_5982 PF01609 Transposase DDE domain BF28_5984 PF01925 BF28_5984 BF28_5985 PF03567 Sulfotransferase family BF28_5986 PF12996 BF28_5986 BF28_5986 PF13524 Glycosyl transferases group 1 BF28_5987 PF03567 Sulfotransferase family BF28_5988 PF01758 Sodium Bile acid symporter family BF28_5989 PF01297 Periplasmic solute binding protein family BF28_5990 PF00950 BF28_5990 BF28_5991 PF00005 ABC transporter BF28_5992 PF00239 Resolvase, N terminal domain BF28_5992 PF02796 Helix-turn-helix domain of resolvase BF28_5996 PF00589 Phage integrase family BF28_5999 PF11799 impB/mucB/samB family C-terminal domain BF28_60 PF00009 Elongation factor Tu GTP binding domain BF28_60 PF03143 Elongation factor Tu C-terminal domain BF28_60 PF03144 Elongation factor Tu domain 2 BF28_600 PF00210 Ferritin-like domain BF28_6000 PF08863 BF28_6000 BF28_6001 PF07751 BF28_6001 BF28_6002 PF00239 Resolvase, N terminal domain BF28_6003 PF03432 BF28_6003 BF28_6009 PF12844 Helix-turn-helix domain BF28_601 PF03819 MazG nucleotide pyrophosphohydrolase domain BF28_6010 PF11611 Domain of unknown function (DUF4352) BF28_6011 PF13273 BF28_6011 BF28_6018 PF01381 Helix-turn-helix BF28_6019 PF01381 Helix-turn-helix BF28_602 PF03641 Possible lysine decarboxylase BF28_6020 PF13152 BF28_6020 BF28_6020 PF13411 MerR HTH family regulatory protein BF28_6022 PF00589 Phage integrase family BF28_6024 PF02517 CAAX protease self-immunity BF28_6026 PF01076 Plasmid recombination enzyme BF28_6027 PF10898 BF28_6027 BF28_6028 PF13152 BF28_6028 BF28_6029 PF00293 NUDIX domain BF28_6033 PF01076 Plasmid recombination enzyme BF28_6035 PF05732 BF28_6035 BF28_6039 PF01076 Plasmid recombination enzyme BF28_605 PF00210 Ferritin-like domain BF28_606 PF01235 BF28_606 BF28_607 PF02080 TrkA-C domain BF28_608 PF00999 Sodium/hydrogen exchanger family BF28_609 PF13058 BF28_609 BF28_61 PF00009 Elongation factor Tu GTP binding domain BF28_61 PF00679 Elongation factor G C-terminus BF28_61 PF03144 Elongation factor Tu domain 2 BF28_61 PF03764 Elongation factor G, domain IV BF28_61 PF14492 Elongation Factor G, domain II BF28_610 PF01047 MarR family BF28_611 PF02678 Pirin BF28_612 PF01447 Thermolysin metallopeptidase, catalytic domain BF28_612 PF02868 Thermolysin metallopeptidase, alpha-helical domain BF28_612 PF03413 Peptidase propeptide and YPEB domain BF28_612 PF07504 Fungalysin/Thermolysin Propeptide Motif BF28_613 PF01883 Domain of unknown function DUF59 BF28_614 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_614 PF00672 HAMP domain BF28_615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_615 PF00672 HAMP domain BF28_616 PF08241 Methyltransferase domain BF28_618 PF00892 EamA-like transporter family BF28_619 PF00512 His Kinase A (phospho-acceptor) domain BF28_619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_62 PF00177 Ribosomal protein S7p/S5e BF28_620 PF00072 Response regulator receiver domain BF28_620 PF00486 Transcriptional regulatory protein, C terminal BF28_621 PF03734 L,D-transpeptidase catalytic domain BF28_622 PF13123 BF28_622 BF28_623 PF09335 BF28_623 BF28_625 PF01381 Helix-turn-helix BF28_626 PF11368 BF28_626 BF28_628 PF13153 BF28_628 BF28_629 PF00005 ABC transporter BF28_63 PF00164 Ribosomal protein S12/S23 BF28_630 PF12679 BF28_630 BF28_632 PF00072 Response regulator receiver domain BF28_632 PF00486 Transcriptional regulatory protein, C terminal BF28_633 PF00512 His Kinase A (phospho-acceptor) domain BF28_633 PF00672 HAMP domain BF28_633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_634 PF13074 BF28_634 BF28_635 PF13302 Acetyltransferase (GNAT) domain BF28_636 PF02588 BF28_636 BF28_636 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_638 PF02096 60Kd inner membrane protein BF28_64 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF28_641 PF13520 Amino acid permease BF28_642 PF07690 Major Facilitator Superfamily BF28_644 PF00746 BF28_644 BF28_645 PF01978 Sugar-specific transcriptional regulator TrmB BF28_645 PF11495 Archaeal transcriptional regulator TrmB BF28_646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF28_646 PF00672 HAMP domain BF28_646 PF02743 Cache domain BF28_647 PF01910 Domain of unknown function DUF77 BF28_648 PF10835 BF28_648 BF28_649 PF01619 Proline dehydrogenase BF28_65 PF00623 RNA polymerase Rpb1, domain 2 BF28_65 PF04983 RNA polymerase Rpb1, domain 3 BF28_65 PF04997 RNA polymerase Rpb1, domain 1 BF28_65 PF04998 RNA polymerase Rpb1, domain 5 BF28_65 PF05000 RNA polymerase Rpb1, domain 4 BF28_650 PF00768 D-alanyl-D-alanine carboxypeptidase BF28_651 PF14115 BF28_651 BF28_652 PF00378 Enoyl-CoA hydratase/isomerase family BF28_652 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF28_652 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF28_653 PF00108 Thiolase, N-terminal domain BF28_653 PF02803 Thiolase, C-terminal domain BF28_654 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF28_654 PF02770 Acyl-CoA dehydrogenase, middle domain BF28_654 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF28_655 PF00753 Metallo-beta-lactamase superfamily BF28_656 PF13305 WHG domain BF28_657 PF01381 Helix-turn-helix BF28_659 PF02517 CAAX protease self-immunity BF28_66 PF00562 RNA polymerase Rpb2, domain 6 BF28_66 PF04560 RNA polymerase Rpb2, domain 7 BF28_66 PF04561 RNA polymerase Rpb2, domain 2 BF28_66 PF04563 RNA polymerase beta subunit BF28_66 PF04565 RNA polymerase Rpb2, domain 3 BF28_66 PF10385 RNA polymerase beta subunit external 1 domain BF28_661 PF07875 BF28_661 BF28_662 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_662 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_663 PF13303 BF28_663 BF28_664 PF14378 BF28_664 BF28_666 PF13073 BF28_666 BF28_668 PF03960 ArsC family BF28_669 PF01597 Glycine cleavage H-protein BF28_67 PF05175 Methyltransferase small domain BF28_671 PF00085 Thioredoxin BF28_673 PF00005 ABC transporter BF28_673 PF09383 NIL domain BF28_674 PF00528 Binding-protein-dependent transport system inner membrane component BF28_675 PF03180 NLPA lipoprotein BF28_676 PF03180 NLPA lipoprotein BF28_677 PF00005 ABC transporter BF28_678 PF01458 Uncharacterized protein family (UPF0051) BF28_679 PF00266 Aminotransferase class-V BF28_68 PF00542 Ribosomal protein L7/L12 C-terminal domain BF28_68 PF16320 BF28_68 BF28_680 PF01592 NifU-like N terminal domain BF28_681 PF01458 Uncharacterized protein family (UPF0051) BF28_682 PF02872 5'-nucleotidase, C-terminal domain BF28_683 PF08827 Domain of unknown function (DUF1805) BF28_684 PF09560 BF28_684 BF28_685 PF01551 Peptidase family M23 BF28_686 PF04055 Radical SAM superfamily BF28_686 PF16881 BF28_686 BF28_687 PF04073 Aminoacyl-tRNA editing domain BF28_688 PF00300 Histidine phosphatase superfamily (branch 1) BF28_69 PF00466 Ribosomal protein L10 BF28_690 PF10086 BF28_690 BF28_691 PF07739 TipAS antibiotic-recognition domain BF28_691 PF13411 MerR HTH family regulatory protein BF28_692 PF09580 BF28_692 BF28_693 PF06265 Protein of unknown function (DUF1027) BF28_695 PF11256 BF28_695 BF28_696 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF28_697 PF01934 Protein of unknown function DUF86 BF28_698 PF01022 Bacterial regulatory protein, arsR family BF28_699 PF13242 HAD-hyrolase-like BF28_699 PF13344 Haloacid dehalogenase-like hydrolase BF28_70 PF00687 Ribosomal protein L1p/L10e family BF28_701 PF02525 Flavodoxin-like fold BF28_702 PF00583 Acetyltransferase (GNAT) family BF28_703 PF04608 Phosphatidylglycerophosphatase A BF28_706 PF01106 NifU-like domain BF28_707 PF07315 Protein of unknown function (DUF1462) BF28_708 PF01909 Nucleotidyltransferase domain BF28_708 PF13427 BF28_708 BF28_709 PF02517 CAAX protease self-immunity BF28_71 PF00298 Ribosomal protein L11, RNA binding domain BF28_71 PF03946 Ribosomal protein L11, N-terminal domain BF28_710 PF03831 PhnA protein BF28_710 PF08274 PhnA Zinc-Ribbon BF28_711 PF03649 BF28_711 BF28_712 PF00005 ABC transporter BF28_713 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_714 PF07293 BF28_714 BF28_715 PF01678 Diaminopimelate epimerase BF28_716 PF01521 Iron-sulphur cluster biosynthesis BF28_717 PF13302 Acetyltransferase (GNAT) domain BF28_718 PF06486 Protein of unknown function (DUF1093) BF28_719 PF04463 BF28_719 BF28_72 PF00467 KOW motif BF28_72 PF02357 Transcription termination factor nusG BF28_720 PF13730 BF28_720 BF28_721 PF07690 Major Facilitator Superfamily BF28_722 PF14526 Integron-associated effector binding protein BF28_723 PF00746 BF28_723 BF28_723 PF01345 BF28_723 BF28_724 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_725 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF28_726 PF00293 NUDIX domain BF28_727 PF14068 BF28_727 BF28_728 PF06725 3D domain BF28_729 PF00883 Cytosol aminopeptidase family, catalytic domain BF28_729 PF02789 Cytosol aminopeptidase family, N-terminal domain BF28_73 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BF28_730 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF28_730 PF10372 Bacterial membrane-spanning protein N-terminus BF28_731 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF28_731 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF28_731 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF28_731 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF28_732 PF00483 Nucleotidyl transferase BF28_733 PF02632 BioY family BF28_734 PF11738 Protein of unknown function (DUF3298) BF28_734 PF13739 Domain of unknown function (DUF4163) BF28_735 PF03061 Thioesterase superfamily BF28_736 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF28_736 PF03129 Anticodon binding domain BF28_737 PF08713 DNA alkylation repair enzyme BF28_739 PF03600 Citrate transporter BF28_74 PF04542 Sigma-70 region 2 BF28_74 PF08281 Sigma-70, region 4 BF28_740 PF00929 Exonuclease BF28_741 PF08810 Kinase associated protein B BF28_743 PF00080 Copper/zinc superoxide dismutase (SODC) BF28_744 PF00155 Aminotransferase class I and II BF28_745 PF08958 Domain of unknown function (DUF1871) BF28_746 PF12697 Alpha/beta hydrolase family BF28_747 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF28_747 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF28_748 PF01037 AsnC family BF28_749 PF00155 Aminotransferase class I and II BF28_75 PF05991 BF28_75 BF28_750 PF00575 S1 RNA binding domain BF28_751 PF04070 BF28_751 BF28_752 PF00342 Phosphoglucose isomerase BF28_753 PF02254 TrkA-N domain BF28_753 PF07885 Ion channel BF28_754 PF08868 YugN-like family BF28_755 PF02308 BF28_755 BF28_76 PF00588 SpoU rRNA Methylase family BF28_76 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF28_77 PF00636 Ribonuclease III domain BF28_78 PF01406 tRNA synthetases class I (C) catalytic domain BF28_78 PF09190 DALR domain BF28_782 PF00056 lactate/malate dehydrogenase, NAD binding domain BF28_782 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF28_784 PF00082 Subtilase family BF28_784 PF02225 PA domain BF28_784 PF05922 Peptidase inhibitor I9 BF28_784 PF06280 Fn3-like domain (DUF1034) BF28_785 PF12389 BF28_785 BF28_786 PF00128 Alpha amylase, catalytic domain BF28_786 PF02806 Alpha amylase, C-terminal all-beta domain BF28_786 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF28_787 PF00483 Nucleotidyl transferase BF28_788 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_788 PF00483 Nucleotidyl transferase BF28_789 PF00534 Glycosyl transferases group 1 BF28_789 PF08323 Starch synthase catalytic domain BF28_79 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_79 PF06426 Serine acetyltransferase, N-terminal BF28_790 PF00343 Carbohydrate phosphorylase BF28_792 PF01764 Lipase (class 3) BF28_793 PF01987 Mitochondrial biogenesis AIM24 BF28_794 PF00313 'Cold-shock' DNA-binding domain BF28_795 PF01258 Prokaryotic dksA/traR C4-type zinc finger BF28_796 PF01040 UbiA prenyltransferase family BF28_797 PF00425 chorismate binding enzyme BF28_798 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF28_798 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF28_798 PF16582 BF28_798 BF28_799 PF00561 alpha/beta hydrolase fold BF28_80 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF28_800 PF00378 Enoyl-CoA hydratase/isomerase family BF28_801 PF00501 AMP-binding enzyme BF28_801 PF13193 AMP-binding enzyme C-terminal domain BF28_802 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF28_802 PF13378 Enolase C-terminal domain-like BF28_803 PF00072 Response regulator receiver domain BF28_803 PF00486 Transcriptional regulatory protein, C terminal BF28_804 PF00512 His Kinase A (phospho-acceptor) domain BF28_804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_805 PF02557 D-alanyl-D-alanine carboxypeptidase BF28_806 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF28_807 PF00860 Permease family BF28_808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF28_808 PF03466 LysR substrate binding domain BF28_81 PF02542 YgbB family BF28_810 PF03841 L-seryl-tRNA selenium transferase BF28_811 PF07071 Protein of unknown function (DUF1341) BF28_812 PF00294 pfkB family carbohydrate kinase BF28_813 PF00392 Bacterial regulatory proteins, gntR family BF28_813 PF07702 UTRA domain BF28_814 PF02447 BF28_814 BF28_815 PF09680 BF28_815 BF28_816 PF02687 BF28_816 BF28_817 PF00005 ABC transporter BF28_818 PF02687 BF28_818 BF28_819 PF02687 BF28_819 BF28_82 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF28_820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_821 PF00072 Response regulator receiver domain BF28_821 PF00486 Transcriptional regulatory protein, C terminal BF28_822 PF01022 Bacterial regulatory protein, arsR family BF28_823 PF07853 BF28_823 BF28_823 PF13630 BF28_823 BF28_824 PF00005 ABC transporter BF28_826 PF06445 GyrI-like small molecule binding domain BF28_826 PF12833 Helix-turn-helix domain BF28_827 PF00005 ABC transporter BF28_828 PF02687 BF28_828 BF28_829 PF08863 BF28_829 BF28_830 PF12833 Helix-turn-helix domain BF28_831 PF00398 Ribosomal RNA adenine dimethylase BF28_832 PF09335 BF28_832 BF28_833 PF06486 Protein of unknown function (DUF1093) BF28_835 PF12784 BF28_835 BF28_836 PF12784 BF28_836 BF28_838 PF00781 Diacylglycerol kinase catalytic domain BF28_839 PF00156 Phosphoribosyl transferase domain BF28_84 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF28_84 PF10635 DisA bacterial checkpoint controller linker region BF28_842 PF00746 BF28_842 BF28_843 PF04203 Sortase family BF28_844 PF00072 Response regulator receiver domain BF28_844 PF00486 Transcriptional regulatory protein, C terminal BF28_845 PF00512 His Kinase A (phospho-acceptor) domain BF28_845 PF00672 HAMP domain BF28_845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_846 PF09515 Thiamine transporter protein (Thia_YuaJ) BF28_847 PF04023 FeoA domain BF28_848 PF02421 Ferrous iron transport protein B BF28_848 PF07664 BF28_848 BF28_848 PF07670 Nucleoside recognition BF28_849 PF12669 BF28_849 BF28_85 PF13481 AAA domain BF28_85 PF13541 Subunit ChlI of Mg-chelatase BF28_850 PF17294 BF28_850 BF28_851 PF04012 BF28_851 BF28_852 PF03994 BF28_852 BF28_853 PF13785 BF28_853 BF28_854 PF14042 BF28_854 BF28_856 PF02588 BF28_856 BF28_856 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF28_857 PF02698 DUF218 domain BF28_858 PF00395 S-layer homology domain BF28_858 PF05901 BF28_858 BF28_859 PF10676 BF28_859 BF28_86 PF00004 ATPase family associated with various cellular activities (AAA) BF28_86 PF02151 UvrB/uvrC motif BF28_86 PF02861 Clp amino terminal domain BF28_86 PF07724 AAA domain (Cdc48 subfamily) BF28_86 PF10431 C-terminal, D2-small domain, of ClpB protein BF28_860 PF02322 BF28_860 BF28_861 PF01654 BF28_861 BF28_862 PF01809 BF28_862 BF28_863 PF00484 Carbonic anhydrase BF28_864 PF02664 S-Ribosylhomocysteinase (LuxS) BF28_865 PF13129 BF28_865 BF28_867 PF00293 NUDIX domain BF28_868 PF11667 BF28_868 BF28_869 PF13419 Haloacid dehalogenase-like hydrolase BF28_87 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BF28_872 PF00528 Binding-protein-dependent transport system inner membrane component BF28_873 PF00005 ABC transporter BF28_874 PF13379 NMT1-like family BF28_875 PF13143 BF28_875 BF28_877 PF00884 Sulfatase BF28_878 PF00561 alpha/beta hydrolase fold BF28_879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_88 PF02151 UvrB/uvrC motif BF28_880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_881 PF13419 Haloacid dehalogenase-like hydrolase BF28_882 PF00455 BF28_882 BF28_882 PF08220 DeoR-like helix-turn-helix domain BF28_883 PF13419 Haloacid dehalogenase-like hydrolase BF28_884 PF01784 NIF3 (NGG1p interacting factor 3) BF28_885 PF01521 Iron-sulphur cluster biosynthesis BF28_886 PF00892 EamA-like transporter family BF28_888 PF03899 BF28_888 BF28_89 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) BF28_890 PF01293 Phosphoenolpyruvate carboxykinase BF28_891 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF28_891 PF02772 S-adenosylmethionine synthetase, central domain BF28_891 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF28_892 PF13302 Acetyltransferase (GNAT) domain BF28_895 PF00994 Probable molybdopterin binding domain BF28_896 PF12804 MobA-like NTP transferase domain BF28_897 PF00534 Glycosyl transferases group 1 BF28_897 PF13439 Glycosyltransferase Family 4 BF28_898 PF01569 PAP2 superfamily BF28_899 PF00132 Bacterial transferase hexapeptide (six repeats) BF28_900 PF12146 Putative lysophospholipase BF28_901 PF10776 BF28_901 BF28_903 PF03929 BF28_903 BF28_904 PF10026 BF28_904 BF28_906 PF01177 Asp/Glu/Hydantoin racemase BF28_908 PF00005 ABC transporter BF28_909 PF06962 Putative rRNA methylase BF28_910 PF04055 Radical SAM superfamily BF28_910 PF16199 BF28_910 BF28_911 PF10732 BF28_911 BF28_913 PF04235 BF28_913 BF28_914 PF00005 ABC transporter BF28_915 PF02687 BF28_915 BF28_916 PF00589 Phage integrase family BF28_917 PF02080 TrkA-C domain BF28_918 PF00999 Sodium/hydrogen exchanger family BF28_919 PF07690 Major Facilitator Superfamily BF28_920 PF00133 tRNA synthetases class I (I, L, M and V) BF28_920 PF08264 Anticodon-binding domain of tRNA BF28_920 PF09334 tRNA synthetases class I (M) BF28_920 PF13603 Leucyl-tRNA synthetase, Domain 2 BF28_921 PF01391 Collagen triple helix repeat (20 copies) BF28_922 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF28_924 PF05504 Spore germination B3/ GerAC like, C-terminal BF28_925 PF03845 BF28_925 BF28_926 PF03323 BF28_926 BF28_927 PF00561 alpha/beta hydrolase fold BF28_929 PF00581 Rhodanese-like domain BF28_930 PF10676 BF28_930 BF28_932 PF01391 Collagen triple helix repeat (20 copies) BF28_933 PF04055 Radical SAM superfamily BF28_933 PF06463 Molybdenum Cofactor Synthesis C BF28_933 PF13353 4Fe-4S single cluster domain BF28_934 PF00899 ThiF family BF28_935 PF01967 MoaC family BF28_936 PF00994 Probable molybdopterin binding domain BF28_936 PF03453 MoeA N-terminal region (domain I and II) BF28_936 PF03454 MoeA C-terminal region (domain IV) BF28_937 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BF28_938 PF02391 MoaE protein BF28_939 PF02597 ThiS family BF28_940 PF13027 BF28_940 BF28_941 PF06800 BF28_941 BF28_942 PF13561 Enoyl-(Acyl carrier protein) reductase BF28_943 PF02559 CarD-like/TRCF domain BF28_944 PF10830 BF28_944 BF28_945 PF10957 BF28_945 BF28_946 PF13119 BF28_946 BF28_947 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BF28_948 PF12840 Helix-turn-helix domain BF28_949 PF07690 Major Facilitator Superfamily BF28_950 PF03486 HI0933-like protein BF28_951 PF01943 BF28_951 BF28_951 PF14667 Polysaccharide biosynthesis C-terminal domain BF28_952 PF00849 RNA pseudouridylate synthase BF28_952 PF01479 S4 domain BF28_953 PF08220 DeoR-like helix-turn-helix domain BF28_954 PF01546 Peptidase family M20/M25/M40 BF28_955 PF02834 LigT like Phosphoesterase BF28_956 PF00128 Alpha amylase, catalytic domain BF28_956 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF28_957 PF01636 Phosphotransferase enzyme family BF28_958 PF14165 BF28_958 BF28_959 PF02390 Putative methyltransferase BF28_960 PF00753 Metallo-beta-lactamase superfamily BF28_961 PF03413 Peptidase propeptide and YPEB domain BF28_962 PF05343 M42 glutamyl aminopeptidase BF28_963 PF01931 Protein of unknown function DUF84 BF28_964 PF00085 Thioredoxin BF28_965 PF07285 BF28_965 BF28_966 PF01588 Putative tRNA binding domain BF28_966 PF14794 Domain of unknown function (DUF4479) BF28_968 PF01580 FtsK/SpoIIIE family BF28_968 PF09397 Ftsk gamma domain BF28_969 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF28_970 PF01225 Mur ligase family, catalytic domain BF28_970 PF02875 Mur ligase family, glutamate ligase domain BF28_970 PF08245 Mur ligase middle domain BF28_972 PF03551 Transcriptional regulator PadR-like family BF28_973 PF13302 Acetyltransferase (GNAT) domain BF28_974 PF06713 BF28_974 BF28_977 PF02073 Thermophilic metalloprotease (M29) BF28_978 PF06103 BF28_978 BF28_979 PF11009 Protein of unknown function (DUF2847) BF28_980 PF07537 CamS sex pheromone cAM373 precursor BF28_981 PF10004 BF28_981 BF28_982 PF00356 Bacterial regulatory proteins, lacI family BF28_982 PF13377 Periplasmic binding protein-like domain BF28_983 PF14119 BF28_983 BF28_984 PF13133 BF28_984 BF28_986 PF13055 BF28_986 BF28_987 PF01741 Large-conductance mechanosensitive channel, MscL BF28_988 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF28_989 PF12796 Ankyrin repeats (3 copies) BF28_990 PF00512 His Kinase A (phospho-acceptor) domain BF28_990 PF00672 HAMP domain BF28_990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF28_991 PF00072 Response regulator receiver domain BF28_991 PF00486 Transcriptional regulatory protein, C terminal BF28_993 PF00561 alpha/beta hydrolase fold BF28_994 PF00850 Histone deacetylase domain BF28_995 PF00571 CBS domain BF28_995 PF01842 ACT domain BF28_996 PF00583 Acetyltransferase (GNAT) family BF28_997 PF00501 AMP-binding enzyme BF28_997 PF13193 AMP-binding enzyme C-terminal domain BF28_999 PF04542 Sigma-70 region 2 BF28_999 PF08281 Sigma-70, region 4