BF28_1001 SM00363 S4 RNA-binding domain BF28_1005 SM00860 SMI1 / KNR4 family BF28_1010 SM00363 S4 RNA-binding domain BF28_1010 SM01390 BF28_1010 BF28_1018 SM00981 BF28_1018 BF28_1042 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF28_1042 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF28_1044 SM00530 Helix-turn-helix XRE-family like proteins BF28_1055 SM00849 Metallo-beta-lactamase superfamily BF28_1057 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_1065 SM00481 DNA polymerase alpha chain like domain BF28_1066 SM00919 Malic enzyme, NAD binding domain BF28_1066 SM01274 BF28_1066 BF28_1067 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_1076 SM01329 BF28_1076 BF28_1081 SM00448 cheY-homologous receiver domain BF28_1081 SM00862 Transcriptional regulatory protein, C terminal BF28_1082 SM00091 PAS domain BF28_1082 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_1082 SM00387 Histidine kinase-like ATPases BF28_1082 SM00388 His Kinase A (phosphoacceptor) domain BF28_1083 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF28_1083 SM00474 3'-5' exonuclease BF28_1083 SM00475 5'-3' exonuclease BF28_1083 SM00482 DNA polymerase A domain BF28_1084 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF28_1084 SM01232 BF28_1084 BF28_1087 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_109 SM00530 Helix-turn-helix XRE-family like proteins BF28_1092 SM00382 ATPases associated with a variety of cellular activities BF28_1094 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_1107 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF28_1109 SM00873 B3/4 domain BF28_1109 SM00874 tRNA synthetase B5 domain BF28_1109 SM00896 Ferredoxin-fold anticodon binding domain BF28_111 SM00905 Dihydroneopterin aldolase BF28_1117 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_1117 SM00481 DNA polymerase alpha chain like domain BF28_1117 SM00483 DNA polymerase X family BF28_1118 SM00463 Small MutS-related domain BF28_1118 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF28_1118 SM00534 ATPase domain of DNA mismatch repair MUTS family BF28_1120 SM00363 S4 RNA-binding domain BF28_1122 SM00725 NEAr Transporter domain BF28_1123 SM00725 NEAr Transporter domain BF28_1126 SM00382 ATPases associated with a variety of cellular activities BF28_1130 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF28_1133 SM00448 cheY-homologous receiver domain BF28_1133 SM00862 Transcriptional regulatory protein, C terminal BF28_1134 SM00387 Histidine kinase-like ATPases BF28_1134 SM00388 His Kinase A (phosphoacceptor) domain BF28_1135 SM00382 ATPases associated with a variety of cellular activities BF28_1145 SM00893 Electron transfer flavoprotein domain BF28_1146 SM00893 Electron transfer flavoprotein domain BF28_1148 SM00465 GIY-YIG type nucleases (URI domain) BF28_1158 SM00382 ATPases associated with a variety of cellular activities BF28_1163 SM00530 Helix-turn-helix XRE-family like proteins BF28_1166 SM00342 helix_turn_helix, arabinose operon control protein BF28_1166 SM00448 cheY-homologous receiver domain BF28_1168 SM00382 ATPases associated with a variety of cellular activities BF28_1169 SM00382 ATPases associated with a variety of cellular activities BF28_1177 SM00421 helix_turn_helix, Lux Regulon BF28_1180 SM00909 Sporulation and spore germination BF28_1189 SM00857 Resolvase, N terminal domain BF28_119 SM00382 ATPases associated with a variety of cellular activities BF28_1204 SM00382 ATPases associated with a variety of cellular activities BF28_1204 SM00994 ClpX C4-type zinc finger BF28_1204 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_1205 SM00382 ATPases associated with a variety of cellular activities BF28_1206 SM00382 ATPases associated with a variety of cellular activities BF28_1206 SM00464 Found in ATP-dependent protease La (LON) BF28_1209 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_121 SM00977 TilS substrate C-terminal domain BF28_1214 SM01004 Delta-aminolevulinic acid dehydratase BF28_1216 SM00257 Lysin motif BF28_122 SM00331 Sigma factor PP2C-like phosphatases BF28_122 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF28_1234 SM01317 BF28_1234 BF28_1236 SM00448 cheY-homologous receiver domain BF28_1236 SM00862 Transcriptional regulatory protein, C terminal BF28_1237 SM00387 Histidine kinase-like ATPases BF28_1238 SM00382 ATPases associated with a variety of cellular activities BF28_1248 SM00257 Lysin motif BF28_125 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_1251 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_1255 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_1256 SM00382 ATPases associated with a variety of cellular activities BF28_1260 SM01323 BF28_1260 BF28_1269 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_1269 SM00954 Region found in RelA / SpoT proteins BF28_1278 SM00382 ATPases associated with a variety of cellular activities BF28_1282 SM00028 Tetratricopeptide repeats BF28_1289 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_129 SM00363 S4 RNA-binding domain BF28_1291 SM00732 Likely ribonuclease with RNase H fold. BF28_1310 SM00382 ATPases associated with a variety of cellular activities BF28_1315 SM00530 Helix-turn-helix XRE-family like proteins BF28_132 SM00966 SpoVT / AbrB like domain BF28_1324 SM00855 Phosphoglycerate mutase family BF28_1329 SM00098 Alkaline phosphatase homologues BF28_133 SM00487 DEAD-like helicases superfamily BF28_133 SM00490 helicase superfamily c-terminal domain BF28_133 SM00982 BF28_133 BF28_133 SM01058 CarD-like/TRCF domain BF28_1331 SM00954 Region found in RelA / SpoT proteins BF28_1344 SM01103 BF28_1344 BF28_1346 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_1350 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_1352 SM00849 Metallo-beta-lactamase superfamily BF28_1358 SM00838 Elongation factor G C-terminus BF28_136 SM01400 BF28_136 BF28_1360 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_1364 SM00271 DnaJ molecular chaperone homology domain BF28_1367 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_1373 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_1380 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_1382 SM00400 zinc finger BF28_1382 SM00493 BF28_1382 BF28_1382 SM00766 DNA primase DnaG DnaB-binding BF28_1389 SM00487 DEAD-like helicases superfamily BF28_1389 SM00490 helicase superfamily c-terminal domain BF28_1390 SM00518 AP endonuclease family 2 BF28_1393 SM00382 ATPases associated with a variety of cellular activities BF28_1406 SM00382 ATPases associated with a variety of cellular activities BF28_1414 SM00849 Metallo-beta-lactamase superfamily BF28_1416 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_1421 SM01018 B12 binding domain BF28_1431 SM00382 ATPases associated with a variety of cellular activities BF28_1438 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF28_1445 SM00487 DEAD-like helicases superfamily BF28_1445 SM00490 helicase superfamily c-terminal domain BF28_145 SM00650 Ribosomal RNA adenine dimethylases BF28_1451 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_1452 SM00382 ATPases associated with a variety of cellular activities BF28_146 SM00493 BF28_146 BF28_1462 SM00354 helix_turn _helix lactose operon repressor BF28_1464 SM00450 Rhodanese Homology Domain BF28_1470 SM00529 Helix-turn-helix diphteria tox regulatory element BF28_1477 SM00841 Elongation factor P, C-terminal BF28_1477 SM01185 BF28_1477 BF28_1481 SM00382 ATPases associated with a variety of cellular activities BF28_149 SM00966 SpoVT / AbrB like domain BF28_1491 SM00878 Biotin carboxylase C-terminal domain BF28_1498 SM00861 Transketolase, pyrimidine binding domain BF28_1499 SM00363 S4 RNA-binding domain BF28_1502 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_1503 SM00448 cheY-homologous receiver domain BF28_1510 SM00091 PAS domain BF28_1510 SM00382 ATPases associated with a variety of cellular activities BF28_1512 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_1516 SM00861 Transketolase, pyrimidine binding domain BF28_1523 SM00062 Bacterial periplasmic substrate-binding proteins BF28_1523 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_1525 SM00382 ATPases associated with a variety of cellular activities BF28_1533 SM00849 Metallo-beta-lactamase superfamily BF28_1537 SM00849 Metallo-beta-lactamase superfamily BF28_1540 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF28_1547 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_1557 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_1557 SM00876 Biotin and Thiamin Synthesis associated domain BF28_1563 SM00704 CDGSH-type zinc finger. Function unknown. BF28_1567 SM00354 helix_turn _helix lactose operon repressor BF28_1586 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_1590 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_1594 SM00382 ATPases associated with a variety of cellular activities BF28_1595 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_1596 SM00936 Penicillin-binding protein 5, C-terminal domain BF28_1598 SM00387 Histidine kinase-like ATPases BF28_1617 SM00849 Metallo-beta-lactamase superfamily BF28_1620 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_1620 SM00866 BF28_1620 BF28_1622 SM01061 CAT RNA binding domain BF28_1629 SM00267 diguanylate cyclase BF28_1634 SM01007 Class II Aldolase and Adducin N-terminal domain BF28_165 SM00493 BF28_165 BF28_1651 SM00382 ATPases associated with a variety of cellular activities BF28_1658 SM00382 ATPases associated with a variety of cellular activities BF28_1659 SM00642 Alpha-amylase domain BF28_1660 SM00642 Alpha-amylase domain BF28_1664 SM00354 helix_turn _helix lactose operon repressor BF28_1667 SM00387 Histidine kinase-like ATPases BF28_1667 SM00388 His Kinase A (phosphoacceptor) domain BF28_167 SM00382 ATPases associated with a variety of cellular activities BF28_1684 SM00052 Putative diguanylate phosphodiesterase BF28_1697 SM00849 Metallo-beta-lactamase superfamily BF28_1703 SM00861 Transketolase, pyrimidine binding domain BF28_1719 SM00838 Elongation factor G C-terminus BF28_1724 SM00670 Large family of predicted nucleotide-binding domains BF28_1728 SM00878 Biotin carboxylase C-terminal domain BF28_1741 SM00855 Phosphoglycerate mutase family BF28_1749 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_1753 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF28_1759 SM00740 BF28_1759 BF28_1760 SM00740 BF28_1760 BF28_1768 SM00842 Cell division protein FtsA BF28_1769 SM00864 Tubulin/FtsZ family, GTPase domain BF28_1769 SM00865 Tubulin/FtsZ family, C-terminal domain BF28_177 SM00936 Penicillin-binding protein 5, C-terminal domain BF28_1778 SM00363 S4 RNA-binding domain BF28_178 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_178 SM01240 BF28_178 BF28_1783 SM00363 S4 RNA-binding domain BF28_1788 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF28_1789 SM00851 MGS-like domain BF28_1789 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF28_1789 SM01209 BF28_1789 BF28_1792 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF28_1801 SM00831 Cation transporter/ATPase, N-terminus BF28_1804 SM00072 Guanylate kinase homologues. BF28_1805 SM01409 BF28_1805 BF28_1807 SM00487 DEAD-like helicases superfamily BF28_1807 SM00490 helicase superfamily c-terminal domain BF28_1812 SM00331 Sigma factor PP2C-like phosphatases BF28_1812 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF28_1813 SM00220 Serine/Threonine protein kinases, catalytic domain BF28_1813 SM00740 BF28_1813 BF28_1816 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF28_1819 SM01120 BF28_1819 BF28_1819 SM01121 BF28_1819 BF28_1820 SM00487 DEAD-like helicases superfamily BF28_1820 SM00490 helicase superfamily c-terminal domain BF28_1823 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF28_1824 SM00822 BF28_1824 BF28_1826 SM00358 Double-stranded RNA binding motif BF28_1826 SM00535 Ribonuclease III family BF28_1827 SM00968 SMC proteins Flexible Hinge Domain BF28_1828 SM00382 ATPases associated with a variety of cellular activities BF28_1828 SM00962 SRP54-type protein, GTPase domain BF28_1828 SM00963 SRP54-type protein, helical bundle domain BF28_1830 SM00382 ATPases associated with a variety of cellular activities BF28_1830 SM00962 SRP54-type protein, GTPase domain BF28_1830 SM00963 SRP54-type protein, helical bundle domain BF28_1840 SM00881 CoA binding domain BF28_1842 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF28_1842 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF28_1842 SM00493 BF28_1842 BF28_1846 SM00382 ATPases associated with a variety of cellular activities BF28_1846 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_1855 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_1857 SM00479 BF28_1857 BF28_1857 SM00481 DNA polymerase alpha chain like domain BF28_1859 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_1859 SM00322 K homology RNA-binding domain BF28_186 SM00434 DNA Topoisomerase IV BF28_1866 SM00904 Riboflavin kinase BF28_1867 SM01387 BF28_1867 BF28_1868 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_1868 SM00322 K homology RNA-binding domain BF28_187 SM00387 Histidine kinase-like ATPases BF28_187 SM00433 TopoisomeraseII BF28_1874 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF28_1876 SM01130 BF28_1876 BF28_1877 SM00849 Metallo-beta-lactamase superfamily BF28_1880 SM00382 ATPases associated with a variety of cellular activities BF28_1880 SM00843 BF28_1880 BF28_1881 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_1881 SM00866 BF28_1881 BF28_1883 SM00382 ATPases associated with a variety of cellular activities BF28_1893 SM00852 Probable molybdopterin binding domain BF28_1894 SM00382 ATPases associated with a variety of cellular activities BF28_1896 SM00322 K homology RNA-binding domain BF28_1896 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_19 SM01251 BF28_19 BF28_190 SM00480 DNA polymerase III beta subunit BF28_1902 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_1905 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF28_1905 SM00534 ATPase domain of DNA mismatch repair MUTS family BF28_1906 SM00853 MutL C terminal dimerisation domain BF28_1906 SM01340 BF28_1906 BF28_1907 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_191 SM00382 ATPases associated with a variety of cellular activities BF28_191 SM00760 Bacterial dnaA protein helix-turn-helix domain BF28_1912 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_1919 SM00257 Lysin motif BF28_1921 SM00148 Phospholipase C, catalytic domain (part); domain X BF28_1923 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_1927 SM00052 Putative diguanylate phosphodiesterase BF28_1927 SM00091 PAS domain BF28_1927 SM00267 diguanylate cyclase BF28_1934 SM00478 endonuclease III BF28_1936 SM00342 helix_turn_helix, arabinose operon control protein BF28_1941 SM00382 ATPases associated with a variety of cellular activities BF28_1947 SM00411 bacterial (prokaryotic) histone like domain BF28_195 SM00393 Putative single-stranded nucleic acids-binding domain BF28_195 SM01245 BF28_195 BF28_1950 SM00636 BF28_1950 BF28_1956 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_1956 SM01134 BF28_1956 BF28_1959 SM00287 Bacterial SH3 domain homologues BF28_1965 SM00382 ATPases associated with a variety of cellular activities BF28_197 SM01228 BF28_197 BF28_1970 SM00422 helix_turn_helix, mercury resistance BF28_1971 SM01230 BF28_1971 BF28_1975 SM00530 Helix-turn-helix XRE-family like proteins BF28_1985 SM00382 ATPases associated with a variety of cellular activities BF28_199 SM00470 ParB-like nuclease domain BF28_2007 SM00465 GIY-YIG type nucleases (URI domain) BF28_201 SM00470 ParB-like nuclease domain BF28_2027 SM00287 Bacterial SH3 domain homologues BF28_2027 SM00644 BF28_2027 BF28_2040 SM00857 Resolvase, N terminal domain BF28_2043 SM00062 Bacterial periplasmic substrate-binding proteins BF28_2044 SM00382 ATPases associated with a variety of cellular activities BF28_2047 SM00861 Transketolase, pyrimidine binding domain BF28_2050 SM00382 ATPases associated with a variety of cellular activities BF28_2051 SM00382 ATPases associated with a variety of cellular activities BF28_2054 SM00644 BF28_2054 BF28_2064 SM00382 ATPases associated with a variety of cellular activities BF28_2084 SM01058 CarD-like/TRCF domain BF28_2090 SM00091 PAS domain BF28_2090 SM00387 Histidine kinase-like ATPases BF28_2090 SM00388 His Kinase A (phosphoacceptor) domain BF28_2094 SM00644 BF28_2094 BF28_2094 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF28_210 SM00267 diguanylate cyclase BF28_2107 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_2116 SM00382 ATPases associated with a variety of cellular activities BF28_2119 SM00479 BF28_2119 BF28_2123 SM00257 Lysin motif BF28_2123 SM00636 BF28_2123 BF28_2126 SM01207 BF28_2126 BF28_2129 SM00448 cheY-homologous receiver domain BF28_2129 SM00862 Transcriptional regulatory protein, C terminal BF28_213 SM00788 Adenylosuccinate synthetase BF28_2130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_2131 SM00881 CoA binding domain BF28_2132 SM00387 Histidine kinase-like ATPases BF28_2132 SM00433 TopoisomeraseII BF28_2133 SM00434 DNA Topoisomerase IV BF28_2136 SM00382 ATPases associated with a variety of cellular activities BF28_2155 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF28_2155 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_2159 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_2162 SM00852 Probable molybdopterin binding domain BF28_218 SM00448 cheY-homologous receiver domain BF28_218 SM00862 Transcriptional regulatory protein, C terminal BF28_2184 SM01022 BF28_2184 BF28_2189 SM00357 Cold shock protein domain BF28_219 SM00091 PAS domain BF28_219 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_219 SM00387 Histidine kinase-like ATPases BF28_219 SM00388 His Kinase A (phosphoacceptor) domain BF28_2190 SM00479 BF28_2190 BF28_2199 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF28_22 SM00646 BF28_22 BF28_2214 SM00028 Tetratricopeptide repeats BF28_2216 SM00829 Enoylreductase BF28_2217 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_222 SM00849 Metallo-beta-lactamase superfamily BF28_223 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_2231 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF28_2231 SM00534 ATPase domain of DNA mismatch repair MUTS family BF28_2233 SM00855 Phosphoglycerate mutase family BF28_2236 SM00829 Enoylreductase BF28_2261 SM00829 Enoylreductase BF28_2262 SM00849 Metallo-beta-lactamase superfamily BF28_2281 SM00849 Metallo-beta-lactamase superfamily BF28_2287 SM00382 ATPases associated with a variety of cellular activities BF28_2291 SM00871 Bacterial transcription activator, effector binding domain BF28_230 SM01240 BF28_230 BF28_2303 SM00636 BF28_2303 BF28_2304 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_2318 SM00849 Metallo-beta-lactamase superfamily BF28_232 SM00487 DEAD-like helicases superfamily BF28_232 SM00490 helicase superfamily c-terminal domain BF28_2326 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_2326 SM00866 BF28_2326 BF28_2332 SM00914 BF28_2332 BF28_2346 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_2346 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_2347 SM01276 BF28_2347 BF28_2351 SM00829 Enoylreductase BF28_2354 SM00829 Enoylreductase BF28_2357 SM00861 Transketolase, pyrimidine binding domain BF28_2358 SM01350 BF28_2358 BF28_2373 SM00422 helix_turn_helix, mercury resistance BF28_2374 SM01091 Transporter associated domain BF28_2379 SM00028 Tetratricopeptide repeats BF28_2390 SM00382 ATPases associated with a variety of cellular activities BF28_2392 SM01266 BF28_2392 BF28_2405 SM00530 Helix-turn-helix XRE-family like proteins BF28_2408 SM00382 ATPases associated with a variety of cellular activities BF28_2418 SM00387 Histidine kinase-like ATPases BF28_2418 SM00421 helix_turn_helix, Lux Regulon BF28_2418 SM00448 cheY-homologous receiver domain BF28_2422 SM00530 Helix-turn-helix XRE-family like proteins BF28_2425 SM00422 helix_turn_helix, mercury resistance BF28_243 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_243 SM00387 Histidine kinase-like ATPases BF28_2435 SM00382 ATPases associated with a variety of cellular activities BF28_244 SM00448 cheY-homologous receiver domain BF28_244 SM00850 LytTr DNA-binding domain BF28_2448 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_2461 SM00287 Bacterial SH3 domain homologues BF28_2461 SM00644 BF28_2461 BF28_2465 SM00860 SMI1 / KNR4 family BF28_2467 SM00342 helix_turn_helix, arabinose operon control protein BF28_2491 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_2493 SM00448 cheY-homologous receiver domain BF28_2493 SM00862 Transcriptional regulatory protein, C terminal BF28_2494 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_2494 SM00387 Histidine kinase-like ATPases BF28_2494 SM00388 His Kinase A (phosphoacceptor) domain BF28_2496 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_2498 SM00382 ATPases associated with a variety of cellular activities BF28_2505 SM00849 Metallo-beta-lactamase superfamily BF28_2508 SM00530 Helix-turn-helix XRE-family like proteins BF28_2523 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_2529 SM00342 helix_turn_helix, arabinose operon control protein BF28_2536 SM00344 helix_turn_helix ASNC type BF28_2540 SM00028 Tetratricopeptide repeats BF28_2543 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_2546 SM00226 Low molecular weight phosphatase family BF28_2549 SM00421 helix_turn_helix, Lux Regulon BF28_2549 SM00448 cheY-homologous receiver domain BF28_255 SM00382 ATPases associated with a variety of cellular activities BF28_2552 SM00382 ATPases associated with a variety of cellular activities BF28_2561 SM00155 Phospholipase D. Active site motifs. BF28_2564 SM01058 CarD-like/TRCF domain BF28_2579 SM01060 BF28_2579 BF28_2589 SM00387 Histidine kinase-like ATPases BF28_2590 SM00448 cheY-homologous receiver domain BF28_2598 SM00530 Helix-turn-helix XRE-family like proteins BF28_2599 SM00870 BF28_2599 BF28_260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_2602 SM00382 ATPases associated with a variety of cellular activities BF28_2605 SM00422 helix_turn_helix, mercury resistance BF28_2620 SM00849 Metallo-beta-lactamase superfamily BF28_2633 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_2638 SM00346 helix_turn_helix isocitrate lyase regulation BF28_2639 SM00796 Allophanate hydrolase subunit 1 BF28_2640 SM00797 Allophanate hydrolase subunit 2 BF28_2652 SM00422 helix_turn_helix, mercury resistance BF28_266 SM00448 cheY-homologous receiver domain BF28_266 SM00850 LytTr DNA-binding domain BF28_2664 SM00448 cheY-homologous receiver domain BF28_2664 SM00862 Transcriptional regulatory protein, C terminal BF28_2665 SM00387 Histidine kinase-like ATPases BF28_2665 SM00388 His Kinase A (phosphoacceptor) domain BF28_2668 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_2673 SM00342 helix_turn_helix, arabinose operon control protein BF28_2673 SM00871 Bacterial transcription activator, effector binding domain BF28_2678 SM00382 ATPases associated with a variety of cellular activities BF28_2680 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_2681 SM00382 ATPases associated with a variety of cellular activities BF28_2686 SM00889 Elongation factor G, domain IV BF28_2687 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_269 SM00267 diguanylate cyclase BF28_2690 SM00382 ATPases associated with a variety of cellular activities BF28_2699 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_2702 SM00382 ATPases associated with a variety of cellular activities BF28_2704 SM01060 BF28_2704 BF28_271 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_272 SM00421 helix_turn_helix, Lux Regulon BF28_272 SM00448 cheY-homologous receiver domain BF28_2726 SM00850 LytTr DNA-binding domain BF28_2731 SM00530 Helix-turn-helix XRE-family like proteins BF28_2733 SM00098 Alkaline phosphatase homologues BF28_2737 SM00346 helix_turn_helix isocitrate lyase regulation BF28_274 SM00100 Cyclic nucleotide-monophosphate binding domain BF28_2740 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF28_2744 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_2752 SM01133 BF28_2752 BF28_2756 SM00382 ATPases associated with a variety of cellular activities BF28_2763 SM00091 PAS domain BF28_2769 SM00287 Bacterial SH3 domain homologues BF28_2776 SM00830 Chorismate mutase type II BF28_2786 SM00382 ATPases associated with a variety of cellular activities BF28_28 SM00382 ATPases associated with a variety of cellular activities BF28_280 SM00354 helix_turn _helix lactose operon repressor BF28_2804 SM00028 Tetratricopeptide repeats BF28_2811 SM00382 ATPases associated with a variety of cellular activities BF28_2812 SM00062 Bacterial periplasmic substrate-binding proteins BF28_282 SM00382 ATPases associated with a variety of cellular activities BF28_2825 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_2826 SM00382 ATPases associated with a variety of cellular activities BF28_284 SM00986 Uracil DNA glycosylase superfamily BF28_284 SM00987 UreE urease accessory protein, C-terminal domain BF28_2860 SM00530 Helix-turn-helix XRE-family like proteins BF28_2870 SM00448 cheY-homologous receiver domain BF28_2870 SM00862 Transcriptional regulatory protein, C terminal BF28_2871 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_2871 SM00387 Histidine kinase-like ATPases BF28_2871 SM00388 His Kinase A (phosphoacceptor) domain BF28_2872 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF28_2880 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF28_2897 SM00091 PAS domain BF28_2897 SM00382 ATPases associated with a variety of cellular activities BF28_29 SM00382 ATPases associated with a variety of cellular activities BF28_2901 SM01130 BF28_2901 BF28_2907 SM01131 BF28_2907 BF28_2914 SM00341 Helicase and RNase D C-terminal BF28_2914 SM00487 DEAD-like helicases superfamily BF28_2914 SM00490 helicase superfamily c-terminal domain BF28_2914 SM00956 BF28_2914 BF28_2927 SM00849 Metallo-beta-lactamase superfamily BF28_293 SM00936 Penicillin-binding protein 5, C-terminal domain BF28_2934 SM00060 Fibronectin type 3 domain BF28_2934 SM00495 Chitin-binding domain type 3 BF28_2941 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_2941 SM00382 ATPases associated with a variety of cellular activities BF28_2954 SM00861 Transketolase, pyrimidine binding domain BF28_2960 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_2960 SM01134 BF28_2960 BF28_2964 SM00382 ATPases associated with a variety of cellular activities BF28_2987 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_2993 SM00871 Bacterial transcription activator, effector binding domain BF28_2997 SM00642 Alpha-amylase domain BF28_2998 SM00014 Acid phosphatase homologues BF28_3016 SM00465 GIY-YIG type nucleases (URI domain) BF28_302 SM00382 ATPases associated with a variety of cellular activities BF28_3032 SM00480 DNA polymerase III beta subunit BF28_304 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_3044 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_3053 SM00422 helix_turn_helix, mercury resistance BF28_3061 SM00382 ATPases associated with a variety of cellular activities BF28_3072 SM00740 BF28_3072 BF28_3073 SM00014 Acid phosphatase homologues BF28_3074 SM00829 Enoylreductase BF28_3077 SM00387 Histidine kinase-like ATPases BF28_3077 SM00388 His Kinase A (phosphoacceptor) domain BF28_3080 SM00382 ATPases associated with a variety of cellular activities BF28_3085 SM00091 PAS domain BF28_3085 SM00387 Histidine kinase-like ATPases BF28_3085 SM00388 His Kinase A (phosphoacceptor) domain BF28_31 SM00662 RNA polymerases D BF28_310 SM00422 helix_turn_helix, mercury resistance BF28_3112 SM01209 BF28_3112 BF28_3113 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_3119 SM00382 ATPases associated with a variety of cellular activities BF28_3122 SM00382 ATPases associated with a variety of cellular activities BF28_3124 SM00387 Histidine kinase-like ATPases BF28_3125 SM00448 cheY-homologous receiver domain BF28_3125 SM00862 Transcriptional regulatory protein, C terminal BF28_3141 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_3144 SM00342 helix_turn_helix, arabinose operon control protein BF28_3152 SM00422 helix_turn_helix, mercury resistance BF28_3152 SM00871 Bacterial transcription activator, effector binding domain BF28_3166 SM00448 cheY-homologous receiver domain BF28_3166 SM00862 Transcriptional regulatory protein, C terminal BF28_3167 SM00387 Histidine kinase-like ATPases BF28_3167 SM00388 His Kinase A (phosphoacceptor) domain BF28_318 SM00836 DALR anticodon binding domain BF28_318 SM01016 Arginyl tRNA synthetase N terminal dom BF28_3181 SM00878 Biotin carboxylase C-terminal domain BF28_3187 SM00382 ATPases associated with a variety of cellular activities BF28_3190 SM00450 Rhodanese Homology Domain BF28_3190 SM00849 Metallo-beta-lactamase superfamily BF28_3193 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_3193 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_3193 SM00319 Homologues of the ligand binding domain of Tar BF28_3194 SM00052 Putative diguanylate phosphodiesterase BF28_3194 SM00091 PAS domain BF28_3194 SM00267 diguanylate cyclase BF28_3195 SM00382 ATPases associated with a variety of cellular activities BF28_3198 SM00646 BF28_3198 BF28_3203 SM00530 Helix-turn-helix XRE-family like proteins BF28_3218 SM00354 helix_turn _helix lactose operon repressor BF28_3219 SM00014 Acid phosphatase homologues BF28_3234 SM00855 Phosphoglycerate mutase family BF28_3235 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_3240 SM00382 ATPases associated with a variety of cellular activities BF28_3245 SM00487 DEAD-like helicases superfamily BF28_3245 SM00490 helicase superfamily c-terminal domain BF28_3247 SM00849 Metallo-beta-lactamase superfamily BF28_3252 SM01207 BF28_3252 BF28_326 SM00382 ATPases associated with a variety of cellular activities BF28_3266 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_3267 SM00835 Cupin BF28_3273 SM00530 Helix-turn-helix XRE-family like proteins BF28_3275 SM00646 BF28_3275 BF28_3277 SM00382 ATPases associated with a variety of cellular activities BF28_3278 SM00382 ATPases associated with a variety of cellular activities BF28_3285 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF28_3288 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_329 SM00421 helix_turn_helix, Lux Regulon BF28_329 SM00448 cheY-homologous receiver domain BF28_3293 SM00357 Cold shock protein domain BF28_330 SM00530 Helix-turn-helix XRE-family like proteins BF28_3303 SM00530 Helix-turn-helix XRE-family like proteins BF28_3308 SM01059 Chloramphenicol acetyltransferase BF28_3312 SM00849 Metallo-beta-lactamase superfamily BF28_3318 SM00849 Metallo-beta-lactamase superfamily BF28_332 SM00052 Putative diguanylate phosphodiesterase BF28_332 SM00267 diguanylate cyclase BF28_3327 SM00382 ATPases associated with a variety of cellular activities BF28_3328 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_3329 SM00363 S4 RNA-binding domain BF28_3337 SM00411 bacterial (prokaryotic) histone like domain BF28_334 SM00155 Phospholipase D. Active site motifs. BF28_3341 SM00923 MbtH-like protein BF28_3342 SM00823 Phosphopantetheine attachment site BF28_3342 SM00824 Thioesterase BF28_3350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_3381 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF28_3389 SM00014 Acid phosphatase homologues BF28_3392 SM00219 Tyrosine kinase, catalytic domain BF28_3400 SM00382 ATPases associated with a variety of cellular activities BF28_3403 SM00882 Coenzyme A transferase BF28_3404 SM00882 Coenzyme A transferase BF28_3408 SM00387 Histidine kinase-like ATPases BF28_3408 SM00388 His Kinase A (phosphoacceptor) domain BF28_3411 SM01091 Transporter associated domain BF28_3419 SM00382 ATPases associated with a variety of cellular activities BF28_3430 SM00829 Enoylreductase BF28_3432 SM00421 helix_turn_helix, Lux Regulon BF28_3432 SM00448 cheY-homologous receiver domain BF28_3433 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_344 SM00448 cheY-homologous receiver domain BF28_3455 SM00563 Phosphate acyltransferases BF28_3468 SM00382 ATPases associated with a variety of cellular activities BF28_348 SM00357 Cold shock protein domain BF28_348 SM00382 ATPases associated with a variety of cellular activities BF28_348 SM00959 Rho termination factor, N-terminal domain BF28_3484 SM00857 Resolvase, N terminal domain BF28_3491 SM00028 Tetratricopeptide repeats BF28_3493 SM00382 ATPases associated with a variety of cellular activities BF28_3496 SM00327 von Willebrand factor (vWF) type A domain BF28_35 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_3502 SM00028 Tetratricopeptide repeats BF28_3504 SM00836 DALR anticodon binding domain BF28_3504 SM01016 Arginyl tRNA synthetase N terminal dom BF28_3508 SM00567 E-Z type HEAT repeats BF28_3508 SM00932 Scaffold protein Nfu/NifU N terminal BF28_351 SM00937 BF28_351 BF28_3514 SM00382 ATPases associated with a variety of cellular activities BF28_3515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_3517 SM00860 SMI1 / KNR4 family BF28_3527 SM00894 Excalibur calcium-binding domain BF28_3540 SM00852 Probable molybdopterin binding domain BF28_3542 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_3543 SM00100 Cyclic nucleotide-monophosphate binding domain BF28_3543 SM00419 helix_turn_helix, cAMP Regulatory protein BF28_3547 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF28_3552 SM00460 Transglutaminase/protease-like homologues BF28_3555 SM00849 Metallo-beta-lactamase superfamily BF28_3559 SM00829 Enoylreductase BF28_3563 SM00487 DEAD-like helicases superfamily BF28_3563 SM00490 helicase superfamily c-terminal domain BF28_3590 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_3596 SM01005 Alanine racemase, C-terminal domain BF28_3599 SM00855 Phosphoglycerate mutase family BF28_360 SM00903 Flavin reductase like domain BF28_3600 SM00244 prohibitin homologues BF28_3614 SM01091 Transporter associated domain BF28_3619 SM00155 Phospholipase D. Active site motifs. BF28_3629 SM00855 Phosphoglycerate mutase family BF28_363 SM00226 Low molecular weight phosphatase family BF28_3649 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF28_3661 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_3661 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_3668 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_3670 SM00966 SpoVT / AbrB like domain BF28_3675 SM00460 Transglutaminase/protease-like homologues BF28_3680 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_3694 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_3694 SM00387 Histidine kinase-like ATPases BF28_3694 SM00388 His Kinase A (phosphoacceptor) domain BF28_3695 SM00448 cheY-homologous receiver domain BF28_3695 SM00862 Transcriptional regulatory protein, C terminal BF28_3710 SM00387 Histidine kinase-like ATPases BF28_3710 SM00388 His Kinase A (phosphoacceptor) domain BF28_3712 SM00448 cheY-homologous receiver domain BF28_3712 SM00862 Transcriptional regulatory protein, C terminal BF28_3713 SM00382 ATPases associated with a variety of cellular activities BF28_3715 SM00287 Bacterial SH3 domain homologues BF28_3721 SM00382 ATPases associated with a variety of cellular activities BF28_3722 SM00382 ATPases associated with a variety of cellular activities BF28_3726 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_3733 SM00382 ATPases associated with a variety of cellular activities BF28_3734 SM00382 ATPases associated with a variety of cellular activities BF28_3741 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF28_376 SM00382 ATPases associated with a variety of cellular activities BF28_3760 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF28_3760 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF28_3760 SM00493 BF28_3760 BF28_3761 SM00966 SpoVT / AbrB like domain BF28_3764 SM00382 ATPases associated with a variety of cellular activities BF28_3767 SM00382 ATPases associated with a variety of cellular activities BF28_3770 SM00823 Phosphopantetheine attachment site BF28_3773 SM01011 Aminopeptidase P, N-terminal domain BF28_3779 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF28_3781 SM01133 BF28_3781 BF28_3791 SM00450 Rhodanese Homology Domain BF28_3795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_3795 SM00387 Histidine kinase-like ATPases BF28_3795 SM00388 His Kinase A (phosphoacceptor) domain BF28_3796 SM00448 cheY-homologous receiver domain BF28_3796 SM00862 Transcriptional regulatory protein, C terminal BF28_3798 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_380 SM00052 Putative diguanylate phosphodiesterase BF28_380 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF28_380 SM00091 PAS domain BF28_380 SM00267 diguanylate cyclase BF28_3808 SM00850 LytTr DNA-binding domain BF28_3814 SM00854 Bacterial capsule synthesis protein PGA_cap BF28_3848 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_3848 SM00866 BF28_3848 BF28_3854 SM00382 ATPases associated with a variety of cellular activities BF28_3858 SM00047 Lysozyme subfamily 2 BF28_3859 SM00646 BF28_3859 BF28_3866 SM00530 Helix-turn-helix XRE-family like proteins BF28_3869 SM00487 DEAD-like helicases superfamily BF28_3869 SM00490 helicase superfamily c-terminal domain BF28_3870 SM00448 cheY-homologous receiver domain BF28_3871 SM00387 Histidine kinase-like ATPases BF28_3872 SM00919 Malic enzyme, NAD binding domain BF28_3872 SM01274 BF28_3872 BF28_3876 SM00155 Phospholipase D. Active site motifs. BF28_3879 SM00382 ATPases associated with a variety of cellular activities BF28_3881 SM00421 helix_turn_helix, Lux Regulon BF28_3881 SM00448 cheY-homologous receiver domain BF28_3888 SM00530 Helix-turn-helix XRE-family like proteins BF28_3902 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF28_3904 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_3904 SM00895 BF28_3904 BF28_3912 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_3916 SM00855 Phosphoglycerate mutase family BF28_3919 SM00835 Cupin BF28_3923 SM00849 Metallo-beta-lactamase superfamily BF28_3923 SM01027 Beta-Casp domain BF28_3926 SM00382 ATPases associated with a variety of cellular activities BF28_3930 SM00530 Helix-turn-helix XRE-family like proteins BF28_3941 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF28_3943 SM00382 ATPases associated with a variety of cellular activities BF28_3943 SM00962 SRP54-type protein, GTPase domain BF28_3957 SM00260 Two component signalling adaptor domain BF28_3957 SM00448 cheY-homologous receiver domain BF28_396 SM00850 LytTr DNA-binding domain BF28_3964 SM00382 ATPases associated with a variety of cellular activities BF28_397 SM00382 ATPases associated with a variety of cellular activities BF28_3979 SM00138 Methyltransferase, chemotaxis proteins BF28_3983 SM00073 Histidine Phosphotransfer domain BF28_3983 SM00260 Two component signalling adaptor domain BF28_3983 SM00387 Histidine kinase-like ATPases BF28_3983 SM01231 BF28_3983 BF28_3984 SM00448 cheY-homologous receiver domain BF28_3993 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_4004 SM00422 helix_turn_helix, mercury resistance BF28_4004 SM00871 Bacterial transcription activator, effector binding domain BF28_4005 SM00849 Metallo-beta-lactamase superfamily BF28_4015 SM00357 Cold shock protein domain BF28_4028 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF28_4028 SM00475 5'-3' exonuclease BF28_4034 SM00450 Rhodanese Homology Domain BF28_4047 SM00491 BF28_4047 BF28_4049 SM00981 BF28_4049 BF28_4060 SM00060 Fibronectin type 3 domain BF28_4062 SM00478 endonuclease III BF28_4062 SM00525 BF28_4062 BF28_4067 SM00479 BF28_4067 BF28_4067 SM00491 BF28_4067 BF28_4076 SM00851 MGS-like domain BF28_4080 SM00986 Uracil DNA glycosylase superfamily BF28_4080 SM00987 UreE urease accessory protein, C-terminal domain BF28_4089 SM00914 BF28_4089 BF28_4090 SM00028 Tetratricopeptide repeats BF28_4094 SM00562 BF28_4094 BF28_4099 SM00411 bacterial (prokaryotic) histone like domain BF28_4110 SM01240 BF28_4110 BF28_4111 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_4114 SM00870 BF28_4114 BF28_4116 SM00644 BF28_4116 BF28_4119 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF28_4121 SM00422 helix_turn_helix, mercury resistance BF28_4123 SM00257 Lysin motif BF28_4125 SM00487 DEAD-like helicases superfamily BF28_4125 SM00490 helicase superfamily c-terminal domain BF28_4130 SM00257 Lysin motif BF28_4132 SM00091 PAS domain BF28_4132 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_4132 SM00387 Histidine kinase-like ATPases BF28_4132 SM00388 His Kinase A (phosphoacceptor) domain BF28_4133 SM00448 cheY-homologous receiver domain BF28_4133 SM00862 Transcriptional regulatory protein, C terminal BF28_4137 SM00363 S4 RNA-binding domain BF28_4148 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_4148 SM00387 Histidine kinase-like ATPases BF28_4148 SM00388 His Kinase A (phosphoacceptor) domain BF28_415 SM00984 UDP binding domain BF28_4152 SM00091 PAS domain BF28_4152 SM00387 Histidine kinase-like ATPases BF28_4152 SM00388 His Kinase A (phosphoacceptor) domain BF28_417 SM00382 ATPases associated with a variety of cellular activities BF28_4170 SM00421 helix_turn_helix, Lux Regulon BF28_4170 SM00448 cheY-homologous receiver domain BF28_4171 SM00387 Histidine kinase-like ATPases BF28_4207 SM01329 BF28_4207 BF28_4208 SM00917 LeuA allosteric (dimerisation) domain BF28_4221 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_423 SM00448 cheY-homologous receiver domain BF28_423 SM00862 Transcriptional regulatory protein, C terminal BF28_424 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_424 SM00387 Histidine kinase-like ATPases BF28_424 SM00388 His Kinase A (phosphoacceptor) domain BF28_4245 SM00344 helix_turn_helix ASNC type BF28_4249 SM00382 ATPases associated with a variety of cellular activities BF28_4251 SM00382 ATPases associated with a variety of cellular activities BF28_4252 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_4267 SM00387 Histidine kinase-like ATPases BF28_4267 SM00388 His Kinase A (phosphoacceptor) domain BF28_4271 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_4272 SM00387 Histidine kinase-like ATPases BF28_4272 SM00388 His Kinase A (phosphoacceptor) domain BF28_4276 SM01007 Class II Aldolase and Adducin N-terminal domain BF28_4277 SM00365 Leucine-rich repeat, SDS22-like subfamily BF28_4277 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF28_4277 SM00725 NEAr Transporter domain BF28_4279 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_4279 SM01134 BF28_4279 BF28_4284 SM00382 ATPases associated with a variety of cellular activities BF28_429 SM00530 Helix-turn-helix XRE-family like proteins BF28_4291 SM00822 BF28_4291 BF28_4305 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_4305 SM00895 BF28_4305 BF28_4306 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_4306 SM00387 Histidine kinase-like ATPases BF28_4306 SM00388 His Kinase A (phosphoacceptor) domain BF28_4307 SM00448 cheY-homologous receiver domain BF28_4307 SM00862 Transcriptional regulatory protein, C terminal BF28_431 SM00382 ATPases associated with a variety of cellular activities BF28_4317 SM00014 Acid phosphatase homologues BF28_4321 SM00382 ATPases associated with a variety of cellular activities BF28_4324 SM00530 Helix-turn-helix XRE-family like proteins BF28_4349 SM00530 Helix-turn-helix XRE-family like proteins BF28_4350 SM00861 Transketolase, pyrimidine binding domain BF28_4373 SM00635 Bacterial Ig-like domain 2 BF28_4403 SM00954 Region found in RelA / SpoT proteins BF28_4405 SM01118 BF28_4405 BF28_441 SM00487 DEAD-like helicases superfamily BF28_441 SM00490 helicase superfamily c-terminal domain BF28_4411 SM00155 Phospholipase D. Active site motifs. BF28_4418 SM00382 ATPases associated with a variety of cellular activities BF28_4419 SM00382 ATPases associated with a variety of cellular activities BF28_4427 SM00825 Beta-ketoacyl synthase BF28_4433 SM00382 ATPases associated with a variety of cellular activities BF28_4433 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_4441 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_4443 SM00530 Helix-turn-helix XRE-family like proteins BF28_4444 SM00642 Alpha-amylase domain BF28_4446 SM01060 BF28_4446 BF28_4469 SM00357 Cold shock protein domain BF28_447 SM00287 Bacterial SH3 domain homologues BF28_4477 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_4477 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_4483 SM00448 cheY-homologous receiver domain BF28_4483 SM00862 Transcriptional regulatory protein, C terminal BF28_4484 SM00387 Histidine kinase-like ATPases BF28_4484 SM00388 His Kinase A (phosphoacceptor) domain BF28_4486 SM00342 helix_turn_helix, arabinose operon control protein BF28_4486 SM00871 Bacterial transcription activator, effector binding domain BF28_4489 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_4492 SM00725 NEAr Transporter domain BF28_4497 SM00849 Metallo-beta-lactamase superfamily BF28_4499 SM00354 helix_turn _helix lactose operon repressor BF28_4521 SM00422 helix_turn_helix, mercury resistance BF28_453 SM00287 Bacterial SH3 domain homologues BF28_4546 SM00382 ATPases associated with a variety of cellular activities BF28_4549 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_4558 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_4582 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_4590 SM00829 Enoylreductase BF28_4593 SM00382 ATPases associated with a variety of cellular activities BF28_4594 SM00387 Histidine kinase-like ATPases BF28_4594 SM00388 His Kinase A (phosphoacceptor) domain BF28_4595 SM00448 cheY-homologous receiver domain BF28_4595 SM00862 Transcriptional regulatory protein, C terminal BF28_4602 SM00387 Histidine kinase-like ATPases BF28_4602 SM00388 His Kinase A (phosphoacceptor) domain BF28_4602 SM00448 cheY-homologous receiver domain BF28_4603 SM00138 Methyltransferase, chemotaxis proteins BF28_4604 SM00331 Sigma factor PP2C-like phosphatases BF28_4604 SM00448 cheY-homologous receiver domain BF28_4617 SM00460 Transglutaminase/protease-like homologues BF28_4622 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF28_4631 SM01120 BF28_4631 BF28_4640 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_4643 SM01061 CAT RNA binding domain BF28_4665 SM00422 helix_turn_helix, mercury resistance BF28_4684 SM00860 SMI1 / KNR4 family BF28_4692 SM00382 ATPases associated with a variety of cellular activities BF28_4693 SM00382 ATPases associated with a variety of cellular activities BF28_47 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF28_4704 SM00646 BF28_4704 BF28_4717 SM00635 Bacterial Ig-like domain 2 BF28_4720 SM00957 SecA DEAD-like domain BF28_4720 SM00958 SecA preprotein cross-linking domain BF28_4727 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_4728 SM00644 BF28_4728 BF28_4741 SM00421 helix_turn_helix, Lux Regulon BF28_4741 SM00448 cheY-homologous receiver domain BF28_4742 SM00387 Histidine kinase-like ATPases BF28_4750 SM00382 ATPases associated with a variety of cellular activities BF28_4752 SM00062 Bacterial periplasmic substrate-binding proteins BF28_4752 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_4753 SM00382 ATPases associated with a variety of cellular activities BF28_4754 SM00382 ATPases associated with a variety of cellular activities BF28_4758 SM01060 BF28_4758 BF28_4766 SM00829 Enoylreductase BF28_4773 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_4780 SM00344 helix_turn_helix ASNC type BF28_48 SM01374 BF28_48 BF28_4802 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF28_4814 SM00382 ATPases associated with a variety of cellular activities BF28_4816 SM00287 Bacterial SH3 domain homologues BF28_4826 SM00829 Enoylreductase BF28_4831 SM00450 Rhodanese Homology Domain BF28_4832 SM00450 Rhodanese Homology Domain BF28_4834 SM00450 Rhodanese Homology Domain BF28_4834 SM00849 Metallo-beta-lactamase superfamily BF28_4835 SM00450 Rhodanese Homology Domain BF28_4837 SM00450 Rhodanese Homology Domain BF28_4856 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_486 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF28_487 SM00382 ATPases associated with a variety of cellular activities BF28_4873 SM00382 ATPases associated with a variety of cellular activities BF28_4875 SM00287 Bacterial SH3 domain homologues BF28_4878 SM00116 Domain in cystathionine beta-synthase and other proteins. BF28_490 SM00984 UDP binding domain BF28_4908 SM00899 BF28_4908 BF28_4926 SM00530 Helix-turn-helix XRE-family like proteins BF28_4935 SM00530 Helix-turn-helix XRE-family like proteins BF28_4937 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_4944 SM00770 Zinc dependent phospholipase C (alpha toxin) BF28_4948 SM00829 Enoylreductase BF28_4955 SM00382 ATPases associated with a variety of cellular activities BF28_4958 SM00354 helix_turn _helix lactose operon repressor BF28_4960 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_4962 SM00382 ATPases associated with a variety of cellular activities BF28_4963 SM00382 ATPases associated with a variety of cellular activities BF28_497 SM00487 DEAD-like helicases superfamily BF28_497 SM00490 helicase superfamily c-terminal domain BF28_4971 SM00448 cheY-homologous receiver domain BF28_4971 SM00862 Transcriptional regulatory protein, C terminal BF28_4972 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_4972 SM00387 Histidine kinase-like ATPases BF28_4972 SM00388 His Kinase A (phosphoacceptor) domain BF28_4982 SM00062 Bacterial periplasmic substrate-binding proteins BF28_4982 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_4983 SM00382 ATPases associated with a variety of cellular activities BF28_499 SM00357 Cold shock protein domain BF28_4990 SM00642 Alpha-amylase domain BF28_4992 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_4992 SM00866 BF28_4992 BF28_4994 SM00052 Putative diguanylate phosphodiesterase BF28_4994 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF28_4994 SM00091 PAS domain BF28_4994 SM00267 diguanylate cyclase BF28_4997 SM00155 Phospholipase D. Active site motifs. BF28_4998 SM00382 ATPases associated with a variety of cellular activities BF28_4999 SM00327 von Willebrand factor (vWF) type A domain BF28_5005 SM00382 ATPases associated with a variety of cellular activities BF28_501 SM00957 SecA DEAD-like domain BF28_501 SM00958 SecA preprotein cross-linking domain BF28_5011 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_5014 SM01091 Transporter associated domain BF28_502 SM00937 BF28_502 BF28_5024 SM00028 Tetratricopeptide repeats BF28_5024 SM00530 Helix-turn-helix XRE-family like proteins BF28_5027 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_5029 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF28_5029 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF28_5032 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF28_5032 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF28_5036 SM00448 cheY-homologous receiver domain BF28_5036 SM00862 Transcriptional regulatory protein, C terminal BF28_5037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5037 SM00387 Histidine kinase-like ATPases BF28_5037 SM00388 His Kinase A (phosphoacceptor) domain BF28_5039 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_504 SM00382 ATPases associated with a variety of cellular activities BF28_5042 SM00919 Malic enzyme, NAD binding domain BF28_5042 SM01274 BF28_5042 BF28_5044 SM00448 cheY-homologous receiver domain BF28_5045 SM00387 Histidine kinase-like ATPases BF28_5046 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5046 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5049 SM00387 Histidine kinase-like ATPases BF28_5049 SM00388 His Kinase A (phosphoacceptor) domain BF28_5050 SM00448 cheY-homologous receiver domain BF28_5050 SM00862 Transcriptional regulatory protein, C terminal BF28_5055 SM00382 ATPases associated with a variety of cellular activities BF28_5057 SM00248 ankyrin repeats BF28_506 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF28_506 SM00245 tail specific protease BF28_5063 SM00448 cheY-homologous receiver domain BF28_5064 SM00091 PAS domain BF28_5064 SM00387 Histidine kinase-like ATPases BF28_5065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5066 SM00244 prohibitin homologues BF28_5068 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF28_5072 SM00382 ATPases associated with a variety of cellular activities BF28_5073 SM00062 Bacterial periplasmic substrate-binding proteins BF28_5078 SM00763 PrkA AAA domain BF28_508 SM00382 ATPases associated with a variety of cellular activities BF28_5080 SM00052 Putative diguanylate phosphodiesterase BF28_5080 SM00091 PAS domain BF28_5080 SM00267 diguanylate cyclase BF28_5083 SM00567 E-Z type HEAT repeats BF28_510 SM00382 ATPases associated with a variety of cellular activities BF28_5115 SM00382 ATPases associated with a variety of cellular activities BF28_5119 SM00382 ATPases associated with a variety of cellular activities BF28_512 SM00422 helix_turn_helix, mercury resistance BF28_5124 SM00478 endonuclease III BF28_5124 SM00525 BF28_5124 BF28_5140 SM00984 UDP binding domain BF28_515 SM00530 Helix-turn-helix XRE-family like proteins BF28_5151 SM00530 Helix-turn-helix XRE-family like proteins BF28_5155 SM00382 ATPases associated with a variety of cellular activities BF28_5159 SM00478 endonuclease III BF28_5177 SM00226 Low molecular weight phosphatase family BF28_5179 SM00831 Cation transporter/ATPase, N-terminus BF28_5188 SM00946 Prolyl-tRNA synthetase, C-terminal BF28_5193 SM00530 Helix-turn-helix XRE-family like proteins BF28_5199 SM00060 Fibronectin type 3 domain BF28_5199 SM00636 BF28_5199 BF28_5199 SM00637 BF28_5199 BF28_52 SM00322 K homology RNA-binding domain BF28_520 SM00422 helix_turn_helix, mercury resistance BF28_5200 SM00382 ATPases associated with a variety of cellular activities BF28_5202 SM00382 ATPases associated with a variety of cellular activities BF28_5206 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5206 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5211 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF28_5211 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF28_5211 SM00493 BF28_5211 BF28_5215 SM00642 Alpha-amylase domain BF28_5216 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5216 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5217 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5217 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5218 SM00382 ATPases associated with a variety of cellular activities BF28_5219 SM00062 Bacterial periplasmic substrate-binding proteins BF28_5219 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF28_522 SM00487 DEAD-like helicases superfamily BF28_522 SM00490 helicase superfamily c-terminal domain BF28_5241 SM01007 Class II Aldolase and Adducin N-terminal domain BF28_5250 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF28_5254 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF28_5254 SM00387 Histidine kinase-like ATPases BF28_5254 SM00388 His Kinase A (phosphoacceptor) domain BF28_5263 SM00382 ATPases associated with a variety of cellular activities BF28_5267 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF28_5268 SM00845 GatB domain BF28_5272 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_5278 SM00382 ATPases associated with a variety of cellular activities BF28_5278 SM00930 BF28_5278 BF28_5284 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF28_5284 SM00292 breast cancer carboxy-terminal domain BF28_5284 SM00532 Ligase N family BF28_5288 SM00244 prohibitin homologues BF28_5290 SM01209 BF28_5290 BF28_5290 SM01210 BF28_5290 BF28_5291 SM00798 AICARFT/IMPCHase bienzyme BF28_5291 SM00851 MGS-like domain BF28_5296 SM01211 BF28_5296 BF28_5299 SM00998 Adenylosuccinate lyase C-terminus BF28_530 SM00028 Tetratricopeptide repeats BF28_5301 SM01001 AIR carboxylase BF28_5312 SM00448 cheY-homologous receiver domain BF28_5312 SM00862 Transcriptional regulatory protein, C terminal BF28_5313 SM00387 Histidine kinase-like ATPases BF28_5313 SM00388 His Kinase A (phosphoacceptor) domain BF28_5314 SM00382 ATPases associated with a variety of cellular activities BF28_5332 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5332 SM00387 Histidine kinase-like ATPases BF28_5332 SM00388 His Kinase A (phosphoacceptor) domain BF28_5333 SM00448 cheY-homologous receiver domain BF28_5333 SM00862 Transcriptional regulatory protein, C terminal BF28_5339 SM00883 Chaperonin 10 Kd subunit BF28_5342 SM00881 CoA binding domain BF28_5343 SM00382 ATPases associated with a variety of cellular activities BF28_5365 SM00731 SprT homologues. BF28_5366 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_5366 SM00732 Likely ribonuclease with RNase H fold. BF28_5369 SM01005 Alanine racemase, C-terminal domain BF28_5374 SM00487 DEAD-like helicases superfamily BF28_5374 SM00490 helicase superfamily c-terminal domain BF28_5387 SM00382 ATPases associated with a variety of cellular activities BF28_5388 SM00382 ATPases associated with a variety of cellular activities BF28_5395 SM00382 ATPases associated with a variety of cellular activities BF28_5406 SM00354 helix_turn _helix lactose operon repressor BF28_5408 SM00563 Phosphate acyltransferases BF28_5428 SM00342 helix_turn_helix, arabinose operon control protein BF28_5431 SM00382 ATPases associated with a variety of cellular activities BF28_5432 SM00382 ATPases associated with a variety of cellular activities BF28_5442 SM00829 Enoylreductase BF28_5444 SM00382 ATPases associated with a variety of cellular activities BF28_5444 SM00930 BF28_5444 BF28_5453 SM01350 BF28_5453 BF28_5456 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_5456 SM00895 BF28_5456 BF28_5463 SM00327 von Willebrand factor (vWF) type A domain BF28_5465 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF28_5466 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF28_5466 SM00493 BF28_5466 BF28_548 SM00028 Tetratricopeptide repeats BF28_5483 SM00354 helix_turn _helix lactose operon repressor BF28_5490 SM00354 helix_turn _helix lactose operon repressor BF28_5491 SM00354 helix_turn _helix lactose operon repressor BF28_55 SM01382 BF28_55 BF28_55 SM01383 BF28_55 BF28_5505 SM00849 Metallo-beta-lactamase superfamily BF28_5510 SM00060 Fibronectin type 3 domain BF28_5510 SM00495 Chitin-binding domain type 3 BF28_5547 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_555 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF28_559 SM01192 BF28_559 BF28_559 SM01193 BF28_559 BF28_5591 SM00248 ankyrin repeats BF28_5619 SM00448 cheY-homologous receiver domain BF28_5619 SM00862 Transcriptional regulatory protein, C terminal BF28_5629 SM00530 Helix-turn-helix XRE-family like proteins BF28_5633 SM00530 Helix-turn-helix XRE-family like proteins BF28_5634 SM00894 Excalibur calcium-binding domain BF28_5643 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_5644 SM00257 Lysin motif BF28_5645 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF28_565 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_565 SM00357 Cold shock protein domain BF28_565 SM00955 BF28_565 BF28_5650 SM01276 BF28_5650 BF28_567 SM00448 cheY-homologous receiver domain BF28_567 SM00862 Transcriptional regulatory protein, C terminal BF28_5681 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_5705 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_571 SM00382 ATPases associated with a variety of cellular activities BF28_5710 SM00860 SMI1 / KNR4 family BF28_5722 SM00857 Resolvase, N terminal domain BF28_5727 SM00857 Resolvase, N terminal domain BF28_573 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_5731 SM00382 ATPases associated with a variety of cellular activities BF28_5774 SM00382 ATPases associated with a variety of cellular activities BF28_5779 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5779 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_5779 SM00319 Homologues of the ligand binding domain of Tar BF28_5783 SM00479 BF28_5783 BF28_5800 SM00507 HNH nucleases BF28_583 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5832 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_584 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF28_5843 SM00530 Helix-turn-helix XRE-family like proteins BF28_5846 SM00530 Helix-turn-helix XRE-family like proteins BF28_5855 SM01207 BF28_5855 BF28_586 SM00363 S4 RNA-binding domain BF28_5874 SM00014 Acid phosphatase homologues BF28_5897 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5897 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_59 SM01403 BF28_59 BF28_5900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_5912 SM00903 Flavin reductase like domain BF28_5914 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_5917 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_5919 SM00829 Enoylreductase BF28_5923 SM00342 helix_turn_helix, arabinose operon control protein BF28_593 SM01276 BF28_593 BF28_5935 SM00346 helix_turn_helix isocitrate lyase regulation BF28_5939 SM00028 Tetratricopeptide repeats BF28_5943 SM00422 helix_turn_helix, mercury resistance BF28_5943 SM00871 Bacterial transcription activator, effector binding domain BF28_5962 SM00530 Helix-turn-helix XRE-family like proteins BF28_5972 SM00028 Tetratricopeptide repeats BF28_5973 SM00966 SpoVT / AbrB like domain BF28_5975 SM00530 Helix-turn-helix XRE-family like proteins BF28_5991 SM00382 ATPases associated with a variety of cellular activities BF28_5992 SM00857 Resolvase, N terminal domain BF28_6002 SM00857 Resolvase, N terminal domain BF28_6009 SM00530 Helix-turn-helix XRE-family like proteins BF28_6018 SM00530 Helix-turn-helix XRE-family like proteins BF28_6019 SM00530 Helix-turn-helix XRE-family like proteins BF28_6020 SM00422 helix_turn_helix, mercury resistance BF28_61 SM00838 Elongation factor G C-terminus BF28_61 SM00889 Elongation factor G, domain IV BF28_610 SM00347 helix_turn_helix multiple antibiotic resistance protein BF28_614 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_619 SM00387 Histidine kinase-like ATPases BF28_619 SM00388 His Kinase A (phosphoacceptor) domain BF28_620 SM00448 cheY-homologous receiver domain BF28_620 SM00862 Transcriptional regulatory protein, C terminal BF28_625 SM00530 Helix-turn-helix XRE-family like proteins BF28_629 SM00382 ATPases associated with a variety of cellular activities BF28_632 SM00448 cheY-homologous receiver domain BF28_632 SM00862 Transcriptional regulatory protein, C terminal BF28_633 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_633 SM00387 Histidine kinase-like ATPases BF28_633 SM00388 His Kinase A (phosphoacceptor) domain BF28_646 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF28_646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_65 SM00663 RNA polymerase I subunit A N-terminus BF28_655 SM00849 Metallo-beta-lactamase superfamily BF28_657 SM00530 Helix-turn-helix XRE-family like proteins BF28_670 SM00493 BF28_670 BF28_673 SM00382 ATPases associated with a variety of cellular activities BF28_673 SM00930 BF28_673 BF28_677 SM00382 ATPases associated with a variety of cellular activities BF28_686 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_688 SM00855 Phosphoglycerate mutase family BF28_691 SM00422 helix_turn_helix, mercury resistance BF28_71 SM00649 Ribosomal protein L11/L12 BF28_712 SM00382 ATPases associated with a variety of cellular activities BF28_72 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF28_722 SM00871 Bacterial transcription activator, effector binding domain BF28_74 SM00421 helix_turn_helix, Lux Regulon BF28_740 SM00479 BF28_740 BF28_741 SM01298 BF28_741 BF28_750 SM00316 Ribosomal protein S1-like RNA-binding domain BF28_76 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF28_77 SM00535 Ribonuclease III family BF28_78 SM00840 BF28_78 BF28_786 SM00642 Alpha-amylase domain BF28_794 SM00357 Cold shock protein domain BF28_802 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF28_803 SM00448 cheY-homologous receiver domain BF28_803 SM00862 Transcriptional regulatory protein, C terminal BF28_804 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_804 SM00387 Histidine kinase-like ATPases BF28_804 SM00388 His Kinase A (phosphoacceptor) domain BF28_813 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF28_813 SM00866 BF28_813 BF28_817 SM00382 ATPases associated with a variety of cellular activities BF28_820 SM00387 Histidine kinase-like ATPases BF28_821 SM00448 cheY-homologous receiver domain BF28_821 SM00862 Transcriptional regulatory protein, C terminal BF28_822 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_824 SM00382 ATPases associated with a variety of cellular activities BF28_826 SM00342 helix_turn_helix, arabinose operon control protein BF28_826 SM00871 Bacterial transcription activator, effector binding domain BF28_827 SM00382 ATPases associated with a variety of cellular activities BF28_83 SM00670 Large family of predicted nucleotide-binding domains BF28_830 SM00342 helix_turn_helix, arabinose operon control protein BF28_838 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF28_844 SM00448 cheY-homologous receiver domain BF28_844 SM00862 Transcriptional regulatory protein, C terminal BF28_845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_845 SM00387 Histidine kinase-like ATPases BF28_845 SM00388 His Kinase A (phosphoacceptor) domain BF28_847 SM00899 BF28_847 BF28_85 SM00382 ATPases associated with a variety of cellular activities BF28_858 SM00894 Excalibur calcium-binding domain BF28_86 SM00382 ATPases associated with a variety of cellular activities BF28_86 SM01086 C-terminal, D2-small domain, of ClpB protein BF28_862 SM01234 BF28_862 BF28_863 SM00947 Carbonic anhydrase BF28_873 SM00382 ATPases associated with a variety of cellular activities BF28_879 SM00387 Histidine kinase-like ATPases BF28_879 SM00388 His Kinase A (phosphoacceptor) domain BF28_880 SM00387 Histidine kinase-like ATPases BF28_882 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_882 SM01134 BF28_882 BF28_895 SM00852 Probable molybdopterin binding domain BF28_898 SM00014 Acid phosphatase homologues BF28_908 SM00382 ATPases associated with a variety of cellular activities BF28_910 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_914 SM00382 ATPases associated with a variety of cellular activities BF28_929 SM00450 Rhodanese Homology Domain BF28_933 SM00729 Elongator protein 3, MiaB family, Radical SAM BF28_936 SM00852 Probable molybdopterin binding domain BF28_943 SM01058 CarD-like/TRCF domain BF28_948 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF28_952 SM00363 S4 RNA-binding domain BF28_953 SM00420 helix_turn_helix, Deoxyribose operon repressor BF28_956 SM00642 Alpha-amylase domain BF28_960 SM00849 Metallo-beta-lactamase superfamily BF28_968 SM00843 BF28_968 BF28_982 SM00354 helix_turn _helix lactose operon repressor BF28_989 SM00248 ankyrin repeats BF28_990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF28_990 SM00387 Histidine kinase-like ATPases BF28_990 SM00388 His Kinase A (phosphoacceptor) domain BF28_991 SM00448 cheY-homologous receiver domain BF28_991 SM00862 Transcriptional regulatory protein, C terminal BF28_995 SM00116 Domain in cystathionine beta-synthase and other proteins.