locus-tag	class	description
FOC96_00035	COG0741	lytic transglycosylase activity
FOC96_00035	COG0791	NLP P60 protein
FOC96_00125	COG0551	DNA topoisomerase type I activity
FOC96_00125	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FOC96_00200	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC96_00250	COG4166	transmembrane transport
FOC96_00300	COG1192	Involved in chromosome partitioning
FOC96_00500	COG2311	Membrane
FOC96_00535	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC96_00595	COG4974	Belongs to the 'phage' integrase family
FOC96_00645	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_00650	COG2318	DinB family
FOC96_00675	COG1396	sequence-specific DNA binding
FOC96_00690	COG0840	transmembrane signaling receptor activity
FOC96_00710	COG1396	sequence-specific DNA binding
FOC96_00715	COG3048	D-serine ammonia-lyase activity
FOC96_00725	COG1131	(ABC) transporter
FOC96_00740	COG2815	serine threonine protein kinase
FOC96_00740	COG0515	serine threonine protein kinase
FOC96_00745	COG4974	Belongs to the 'phage' integrase family
FOC96_00925	COG5002	protein histidine kinase activity
FOC96_00930	COG0745	RESPONSE REGULATOR receiver
FOC96_00980	COG0457	Tetratricopeptide repeat
FOC96_00990	COG1923	regulation of RNA biosynthetic process
FOC96_01145	COG1404	Belongs to the peptidase S8 family
FOC96_01225	COG4712	double-strand break repair protein
FOC96_01370	COG4962	Type ii secretion system protein e
FOC96_01430	COG3711	transcriptional antiterminator
FOC96_01435	COG1263	PTS System
FOC96_01435	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC96_01435	COG2190	(PTS) system
FOC96_01440	COG2723	6-phospho-beta-galactosidase activity
FOC96_01525	COG0653	protein targeting
FOC96_01545	COG0470	DNA polymerase III
FOC96_01565	COG3104	oligopeptide transport
FOC96_01640	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
FOC96_01710	COG1525	nuclease
FOC96_01715	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC96_01730	COG4974	Belongs to the 'phage' integrase family
FOC96_01770	COG1484	DNA-dependent DNA replication
FOC96_01775	COG3012	SEC-C Motif Domain Protein
FOC96_01775	COG1405	negative regulation of cell septum assembly
FOC96_01865	COG0464	growth
FOC96_01885	COG1388	LysM domain
FOC96_01885	COG0791	NLP P60 protein
FOC96_01910	COG3344	reverse transcriptase
FOC96_01960	COG0592	DNA-directed DNA polymerase activity
FOC96_02090	COG0305	Participates in initiation and elongation during chromosome replication
FOC96_02205	COG3693	PFAM glycoside hydrolase, family 10
FOC96_02315	COG1674	ftsk spoiiie
FOC96_02425	COG1780	Probably involved in ribonucleotide reductase function
FOC96_02475	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC96_02500	COG4974	Belongs to the 'phage' integrase family
FOC96_02525	COG1073	alpha beta
FOC96_02530	COG0784	Response regulator, receiver
FOC96_02530	COG2205	protein histidine kinase activity
FOC96_02535	COG2197	response regulator
FOC96_02570	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FOC96_02685	COG2207	Transcriptional regulator
FOC96_02685	COG3708	Transcriptional regulator
FOC96_02700	COG4974	Belongs to the 'phage' integrase family
FOC96_02885	COG2002	toxin-antitoxin pair type II binding
FOC96_02895	COG1923	regulation of RNA biosynthetic process
FOC96_02960	COG0546	phosphoglycolate phosphatase activity
FOC96_02965	COG2816	NAD+ diphosphatase activity
FOC96_03030	COG0653	protein targeting
FOC96_03100	COG4824	toxin secretion phage lysis holin
FOC96_03180	COG3561	AntA/AntB antirepressor
FOC96_03220	COG0305	Participates in initiation and elongation during chromosome replication
FOC96_03260	COG0756	dUTP diphosphatase activity
FOC96_03320	COG5484	DNA packaging
FOC96_03390	COG2252	PERMEase
FOC96_03405	COG5444	nuclease activity
FOC96_03420	COG1266	CAAX protease self-immunity
FOC96_03435	COG0488	(ABC) transporter
FOC96_03445	COG0456	acetyltransferase
FOC96_03450	COG1214	PFAM Peptidase M22, glycoprotease
FOC96_03455	COG0802	atpase or kinase
FOC96_03550	COG2183	response to ionizing radiation
FOC96_03555	COG2337	Toxic component of a toxin-antitoxin (TA) module
FOC96_03560	COG0864	Transcriptional regulator
FOC96_03565	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FOC96_03570	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
FOC96_03580	COG0457	Tetratricopeptide repeat
FOC96_03580	COG0705	Rhomboid family
FOC96_03585	COG4294	response to UV
FOC96_03595	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FOC96_03610	COG0531	amino acid
FOC96_03620	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC96_03625	COG3185	4-Hydroxyphenylpyruvate dioxygenase
FOC96_03655	COG0561	phosphatase activity
FOC96_03660	COG4608	Belongs to the ABC transporter superfamily
FOC96_03665	COG0444	Belongs to the ABC transporter superfamily
FOC96_03675	COG0601	transmembrane transport
FOC96_03680	COG0747	negative chemotaxis
FOC96_03695	COG0488	(ABC) transporter
FOC96_03720	COG5298	Protein conserved in bacteria
FOC96_03740	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_03750	COG1609	Transcriptional regulator
FOC96_03760	COG0204	Acyl-transferase
FOC96_03775	COG0697	spore germination
FOC96_03790	COG1910	domain protein
FOC96_03795	COG0725	ABC transporter, periplasmic molybdate-binding protein
FOC96_03800	COG4149	molybdate abc transporter
FOC96_03815	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC96_03820	COG0656	L-ascorbic acid biosynthetic process
FOC96_03825	COG4166	transmembrane transport
FOC96_03830	COG4166	transmembrane transport
FOC96_03840	COG1309	transcriptional regulator
FOC96_03850	COG2207	Transcriptional regulator
FOC96_03860	COG4166	transmembrane transport
FOC96_03865	COG4608	Belongs to the ABC transporter superfamily
FOC96_03870	COG0444	Belongs to the ABC transporter superfamily
FOC96_03875	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC96_03880	COG0601	transmembrane transport
FOC96_03895	COG2814	Major facilitator Superfamily
FOC96_03905	COG2271	Major facilitator Superfamily
FOC96_03910	COG0277	FAD linked oxidase domain protein
FOC96_03920	COG0604	alcohol dehydrogenase
FOC96_03925	COG1464	Belongs to the NlpA lipoprotein family
FOC96_03930	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FOC96_03935	COG2011	ABC-type metal ion transport system permease component
FOC96_03940	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_03975	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
FOC96_04020	COG4856	YbbR-like protein
FOC96_04025	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
FOC96_04105	COG0726	polysaccharide deacetylase
FOC96_04110	COG2194	sulfuric ester hydrolase activity
FOC96_04120	COG0489	protein tyrosine kinase activity
FOC96_04125	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC96_04150	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FOC96_04185	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FOC96_04195	COG0024	Methionine aminopeptidase
FOC96_04205	COG0201	protein transport
FOC96_04265	COG0255	Belongs to the universal ribosomal protein uL29 family
FOC96_04335	COG1358	cellular component organization or biogenesis
FOC96_04350	COG2813	Specifically methylates the guanine in position
FOC96_04370	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FOC96_04375	COG0250	Participates in transcription elongation, termination and antitermination
FOC96_04380	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FOC96_04395	COG3688	RNA-binding protein containing a PIN domain
FOC96_04400	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC96_04415	COG1045	serine acetyltransferase
FOC96_04435	COG4956	integral membrane protein (PIN domain superfamily)
FOC96_04445	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
FOC96_04450	COG0542	response to heat
FOC96_04460	COG3880	PFAM UvrB UvrC protein
FOC96_04550	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FOC96_04555	COG1396	sequence-specific DNA binding
FOC96_04560	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FOC96_04565	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
FOC96_04570	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
FOC96_04575	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC96_04580	COG0512	Glutamine amidotransferase of anthranilate synthase
FOC96_04585	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FOC96_04590	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FOC96_04605	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FOC96_04620	COG2208	phosphoserine phosphatase activity
FOC96_04635	COG1098	S1 RNA binding domain
FOC96_04655	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FOC96_04660	COG3956	TIGRFAM MazG family protein
FOC96_04665	COG2244	polysaccharide biosynthetic process
FOC96_04670	COG2002	toxin-antitoxin pair type II binding
FOC96_04675	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FOC96_04705	COG0251	oxidation-reduction process
FOC96_04710	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FOC96_04725	COG4466	Protein conserved in bacteria
FOC96_04740	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FOC96_04745	COG0084	hydrolase, TatD family'
FOC96_04750	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC96_04750	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC96_04755	COG2002	toxin-antitoxin pair type II binding
FOC96_04760	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FOC96_04770	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FOC96_04780	COG1774	PSP1 C-terminal conserved region
FOC96_04785	COG0470	DNA polymerase III
FOC96_04795	COG1982	Orn Lys Arg decarboxylase major
FOC96_04850	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FOC96_04860	COG0590	tRNA wobble adenosine to inosine editing
FOC96_04865	COG1335	isochorismatase
FOC96_04870	COG1428	Deoxynucleoside kinase
FOC96_04875	COG1428	Deoxynucleoside kinase
FOC96_04905	COG1686	Belongs to the peptidase S11 family
FOC96_04910	COG0517	IMP dehydrogenase activity
FOC96_04910	COG0516	GMP reductase activity
FOC96_04945	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FOC96_04950	COG0187	DNA topoisomerase II activity
FOC96_04960	COG2501	S4 domain
FOC96_04965	COG0592	DNA-directed DNA polymerase activity
FOC96_04975	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FOC96_04985	COG0706	membrane insertase activity
FOC96_04990	COG1847	R3H domain protein
FOC96_05015	COG1192	Involved in chromosome partitioning
FOC96_05020	COG1475	DNA binding
FOC96_05030	COG0668	transmembrane transport
FOC96_05035	COG4481	Protein conserved in bacteria
FOC96_05040	COG0012	GTP binding
FOC96_05050	COG0629	single-stranded DNA binding
FOC96_05060	COG4241	membrane
FOC96_05065	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
FOC96_05075	COG0305	Participates in initiation and elongation during chromosome replication
FOC96_05105	COG0745	RESPONSE REGULATOR receiver
FOC96_05110	COG5002	protein histidine kinase activity
FOC96_05115	COG4863	YycH protein
FOC96_05120	COG4853	Protein conserved in bacteria
FOC96_05125	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
FOC96_05130	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC96_05160	COG1164	Oligoendopeptidase f
FOC96_05185	COG1272	protein, Hemolysin III
FOC96_05190	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC96_05210	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC96_05215	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
FOC96_05220	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FOC96_05225	COG2814	Major facilitator Superfamily
FOC96_05230	COG3275	phosphorelay sensor kinase activity
FOC96_05235	COG3279	Response regulator of the LytR AlgR family
FOC96_05250	COG0628	permease
FOC96_05255	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC96_05255	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC96_05260	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC96_05265	COG1309	transcriptional regulator
FOC96_05270	COG0463	Glycosyl transferase, family 2
FOC96_05290	COG0488	(ABC) transporter
FOC96_05305	COG1607	acyl-coa hydrolase
FOC96_05315	COG0840	transmembrane signaling receptor activity
FOC96_05340	COG0477	Major facilitator Superfamily
FOC96_05345	COG3279	Response regulator of the LytR AlgR family
FOC96_05350	COG1966	Carbon starvation protein
FOC96_05355	COG2879	small protein
FOC96_05360	COG3706	GGDEF domain
FOC96_05365	COG0351	phosphomethylpyrimidine kinase
FOC96_05370	COG2203	Gaf domain
FOC96_05370	COG4585	Histidine kinase
FOC96_05375	COG2197	response regulator
FOC96_05385	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FOC96_05400	COG1011	Hydrolase
FOC96_05405	COG2873	o-acetylhomoserine
FOC96_05415	COG0460	homoserine dehydrogenase
FOC96_05425	COG1609	Transcriptional regulator
FOC96_05430	COG2755	lipolytic protein G-D-S-L family
FOC96_05435	COG1131	(ABC) transporter
FOC96_05440	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FOC96_05450	COG2814	Major facilitator Superfamily
FOC96_05455	COG0561	phosphatase activity
FOC96_05460	COG2233	PERMEase
FOC96_05465	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FOC96_05475	COG2363	Small membrane protein
FOC96_05485	COG3773	Cell wall hydrolase
FOC96_05500	COG0280	phosphate acetyltransferase
FOC96_05505	COG0095	Lipoate-protein ligase
FOC96_05525	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_05530	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_05535	COG1120	ATPase activity
FOC96_05540	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_05545	COG1078	dGTPase activity
FOC96_05555	COG1994	Peptidase M50
FOC96_05565	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC96_05570	COG0584	glycerophosphoryl diester phosphodiesterase
FOC96_05575	COG0789	Transcriptional regulator
FOC96_05580	COG2814	Major facilitator Superfamily
FOC96_05590	COG0010	Belongs to the arginase family
FOC96_05605	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC96_05610	COG4506	Protein conserved in bacteria
FOC96_05620	COG1595	DNA-templated transcription, initiation
FOC96_05640	COG2234	aminopeptidase activity
FOC96_05650	COG0024	Methionine aminopeptidase
FOC96_05655	COG1131	(ABC) transporter
FOC96_05660	COG0842	Transport permease protein
FOC96_05665	COG4585	Histidine kinase
FOC96_05670	COG2197	response regulator
FOC96_05690	COG3300	MHYT domain
FOC96_05690	COG5001	Diguanylate cyclase
FOC96_05700	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC96_05745	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FOC96_05750	COG1404	Belongs to the peptidase S8 family
FOC96_05790	COG3620	sequence-specific DNA binding
FOC96_05795	COG2181	nitrate reductase activity
FOC96_05795	COG0247	lactate metabolic process
FOC96_05800	COG0183	Belongs to the thiolase family
FOC96_05805	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC96_05810	COG1960	acyl-CoA dehydrogenase activity
FOC96_05815	COG1960	acyl-CoA dehydrogenase activity
FOC96_05835	COG4821	SIS domain
FOC96_05855	COG1494	fructose-1,6-bisphosphatase
FOC96_05860	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FOC96_05880	COG2890	protein-(glutamine-N5) methyltransferase activity
FOC96_05895	COG0009	L-threonylcarbamoyladenylate synthase
FOC96_05910	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC96_05915	COG2259	Doxx family
FOC96_05920	COG2190	(PTS) system
FOC96_05930	COG0698	ribose 5-phosphate isomerase
FOC96_05965	COG0356	it plays a direct role in the translocation of protons across the membrane
FOC96_06015	COG3300	MHYT domain
FOC96_06015	COG5001	Diguanylate cyclase
FOC96_06030	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC96_06050	COG0839	Belongs to the complex I subunit 6 family
FOC96_06060	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FOC96_06065	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC96_06070	COG1007	ATP synthesis coupled electron transport
FOC96_06075	COG4836	Membrane
FOC96_06090	COG2385	sporulation resulting in formation of a cellular spore
FOC96_06095	COG3279	Response regulator of the LytR AlgR family
FOC96_06110	COG0739	heme binding
FOC96_06120	COG1609	Transcriptional regulator
FOC96_06135	COG0489	protein tyrosine kinase activity
FOC96_06140	COG3944	biosynthesis protein
FOC96_06145	COG0489	protein tyrosine kinase activity
FOC96_06150	COG4464	protein tyrosine phosphatase activity
FOC96_06155	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FOC96_06175	COG1216	Glycosyl transferase, family 2
FOC96_06175	COG1442	glycosyl transferase family 8
FOC96_06185	COG1215	transferase activity, transferring glycosyl groups
FOC96_06190	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FOC96_06195	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC96_06200	COG1316	TRANSCRIPTIONal
FOC96_06210	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC96_06215	COG0745	RESPONSE REGULATOR receiver
FOC96_06255	COG1136	(ABC) transporter
FOC96_06260	COG0577	efflux transmembrane transporter activity
FOC96_06305	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FOC96_06310	COG4715	Zinc finger, swim domain protein
FOC96_06335	COG3584	3D domain protein
FOC96_06335	COG1388	LysM domain
FOC96_06340	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FOC96_06345	COG1215	transferase activity, transferring glycosyl groups
FOC96_06355	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC96_06360	COG1388	LysM domain
FOC96_06360	COG0791	NLP P60 protein
FOC96_06370	COG1368	sulfuric ester hydrolase activity
FOC96_06380	COG2389	metal-binding protein
FOC96_06395	COG1620	l-lactate permease
FOC96_06405	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FOC96_06410	COG1294	oxidase, subunit
FOC96_06415	COG1271	oxidase subunit
FOC96_06425	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
FOC96_06430	COG0583	DNA-binding transcription factor activity
FOC96_06435	COG1511	domain protein
FOC96_06455	COG0346	lactoylglutathione lyase activity
FOC96_06465	COG1301	dicarboxylic acid transport
FOC96_06470	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC96_06480	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC96_06500	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
FOC96_06510	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC96_06515	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC96_06520	COG1486	melibiose metabolic process
FOC96_06540	COG3933	PFAM sigma-54 factor interaction domain-containing protein
FOC96_06540	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
FOC96_06550	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FOC96_06555	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FOC96_06560	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FOC96_06565	COG1316	TRANSCRIPTIONal
FOC96_06570	COG1739	Uncharacterized protein family UPF0029
FOC96_06575	COG1307	EDD domain protein, DegV family
FOC96_06580	COG1733	regulation of RNA biosynthetic process
FOC96_06585	COG0791	NLP P60 protein
FOC96_06585	COG1388	LysM domain
FOC96_06590	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
FOC96_06595	COG1040	competence protein
FOC96_06600	COG1278	Cold shock
FOC96_06605	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FOC96_06625	COG2884	Cell division ATP-binding protein ftsE
FOC96_06630	COG2177	Part of the ABC transporter FtsEX involved in
FOC96_06635	COG0793	Belongs to the peptidase S41A family
FOC96_06635	COG3409	Peptidoglycan-binding domain 1 protein
FOC96_06640	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC96_06645	COG1132	(ABC) transporter
FOC96_06655	COG0488	(ABC) transporter
FOC96_06660	COG0655	NAD(P)H dehydrogenase (quinone) activity
FOC96_06670	COG0583	DNA-binding transcription factor activity
FOC96_06675	COG2855	membrane
FOC96_06700	COG0789	Transcriptional regulator
FOC96_06715	COG0556	nucleotide-excision repair
FOC96_06720	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FOC96_06730	COG1950	PFAM Membrane protein of
FOC96_06750	COG0110	maltose O-acetyltransferase activity
FOC96_06755	COG0457	Tetratricopeptide repeat
FOC96_06760	COG0492	ferredoxin-NADP+ reductase activity
FOC96_06770	COG1051	belongs to the nudix hydrolase family
FOC96_06780	COG0391	Required for morphogenesis under gluconeogenic growth conditions
FOC96_06790	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC96_06800	COG2323	membrane
FOC96_06815	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC96_06840	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FOC96_06855	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FOC96_06890	COG1346	cytolysis
FOC96_06895	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FOC96_06900	COG1647	Serine aminopeptidase, S33
FOC96_06905	COG0557	exoribonuclease II activity
FOC96_06930	COG3104	oligopeptide transport
FOC96_07005	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
FOC96_07055	COG2814	Major facilitator Superfamily
FOC96_07065	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_07070	COG0488	(ABC) transporter
FOC96_07095	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FOC96_07105	COG0840	transmembrane signaling receptor activity
FOC96_07105	COG3290	protein histidine kinase activity
FOC96_07120	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FOC96_07125	COG1252	NADH dehydrogenase
FOC96_07135	COG1733	regulation of RNA biosynthetic process
FOC96_07140	COG2814	Major facilitator Superfamily
FOC96_07145	COG0656	L-ascorbic acid biosynthetic process
FOC96_07160	COG2910	NAD(P)H-binding
FOC96_07165	COG1115	amino acid carrier protein
FOC96_07170	COG1115	amino acid carrier protein
FOC96_07175	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC96_07180	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC96_07200	COG1611	Belongs to the LOG family
FOC96_07215	COG0783	Belongs to the Dps family
FOC96_07220	COG1115	amino acid carrier protein
FOC96_07225	COG0490	domain, Protein
FOC96_07230	COG0475	glutathione-regulated potassium exporter activity
FOC96_07245	COG1741	Belongs to the pirin family
FOC96_07250	COG3227	Zinc metalloprotease (Elastase)
FOC96_07255	COG2151	metal-sulfur cluster biosynthetic enzyme
FOC96_07260	COG0840	transmembrane signaling receptor activity
FOC96_07285	COG5002	protein histidine kinase activity
FOC96_07290	COG0745	RESPONSE REGULATOR receiver
FOC96_07295	COG1376	ErfK ybiS ycfS ynhG family protein
FOC96_07305	COG0586	Pfam SNARE associated Golgi protein
FOC96_07340	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_07350	COG0706	membrane insertase activity
FOC96_07365	COG0531	amino acid
FOC96_07370	COG2814	Major facilitator Superfamily
FOC96_07390	COG0840	transmembrane signaling receptor activity
FOC96_07395	COG0011	TIGRFAM Protein of
FOC96_07410	COG1686	Belongs to the peptidase S11 family
FOC96_07420	COG1024	Enoyl-CoA hydratase
FOC96_07420	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC96_07425	COG0183	Belongs to the thiolase family
FOC96_07430	COG1960	acyl-CoA dehydrogenase activity
FOC96_07455	COG4555	ABC transporter
FOC96_07465	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_07470	COG1309	transcriptional regulator
FOC96_07475	COG1396	sequence-specific DNA binding
FOC96_07500	COG0039	L-malate dehydrogenase activity
FOC96_07555	COG1393	Belongs to the ArsC family
FOC96_07565	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FOC96_07570	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC96_07580	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FOC96_07585	COG2011	ABC-type metal ion transport system permease component
FOC96_07590	COG1464	Belongs to the NlpA lipoprotein family
FOC96_07595	COG1464	Belongs to the NlpA lipoprotein family
FOC96_07600	COG0396	ATPase activity
FOC96_07605	COG0719	Fe-S assembly protein
FOC96_07610	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FOC96_07615	COG0822	iron-sulfur transferase activity
FOC96_07620	COG0719	Fe-S assembly protein
FOC96_07630	COG1695	Transcriptional regulator
FOC96_07635	COG0737	Belongs to the 5'-nucleotidase family
FOC96_07640	COG3377	Domain of unknown function (DUF1805)
FOC96_07650	COG0739	heme binding
FOC96_07675	COG4377	Putative membrane peptidase family (DUF2324)
FOC96_07680	COG0789	Transcriptional regulator
FOC96_07690	COG4470	Protein conserved in bacteria
FOC96_07705	COG1494	fructose-1,6-bisphosphatase
FOC96_07710	COG2445	Protein of unknown function DUF86
FOC96_07720	COG0647	UMP catabolic process
FOC96_07730	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC96_07735	COG0577	efflux transmembrane transporter activity
FOC96_07735	COG1136	(ABC) transporter
FOC96_07750	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FOC96_07755	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC96_07765	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
FOC96_07770	COG4837	Protein of unknown function (DUF1462)
FOC96_07790	COG2824	Alkylphosphonate utilization operon protein PhnA
FOC96_07795	COG0390	transport system, permease component
FOC96_07800	COG2274	protein secretion by the type I secretion system
FOC96_07810	COG1252	NADH dehydrogenase
FOC96_07825	COG0316	Belongs to the HesB IscA family
FOC96_07835	COG1683	Conserved Protein
FOC96_07850	COG3708	Transcriptional regulator
FOC96_07865	COG1252	NADH dehydrogenase
FOC96_07880	COG3584	3D domain protein
FOC96_07895	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FOC96_07900	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FOC96_07905	COG1268	BioY protein
FOC96_07915	COG2050	protein possibly involved in aromatic compounds catabolism
FOC96_07935	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FOC96_07940	COG5018	Exonuclease
FOC96_07960	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
FOC96_07970	COG2267	carboxylic ester hydrolase activity
FOC96_07975	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC96_07980	COG1522	sequence-specific DNA binding
FOC96_07985	COG0436	Aminotransferase
FOC96_07990	COG1098	S1 RNA binding domain
FOC96_07995	COG2155	Conserved Protein
FOC96_08010	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FOC96_08015	COG1285	pathogenesis
FOC96_08050	COG0544	peptidyl-prolyl cis-trans isomerase activity
FOC96_08150	COG1404	Belongs to the peptidase S8 family
FOC96_08170	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
FOC96_08180	COG0058	SHG alpha-glucan phosphorylase activity
FOC96_08200	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FOC96_08205	COG1575	Belongs to the MenA family. Type 1 subfamily
FOC96_08210	COG1169	isochorismate synthase
FOC96_08220	COG0596	Alpha beta hydrolase
FOC96_08225	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FOC96_08235	COG4948	Mandelate Racemase Muconate Lactonizing
FOC96_08255	COG3964	amidohydrolase
FOC96_08275	COG2188	Transcriptional regulator
FOC96_08290	COG0577	efflux transmembrane transporter activity
FOC96_08295	COG1136	(ABC) transporter
FOC96_08300	COG0577	efflux transmembrane transporter activity
FOC96_08305	COG0577	efflux transmembrane transporter activity
FOC96_08310	COG2205	protein histidine kinase activity
FOC96_08315	COG0745	RESPONSE REGULATOR receiver
FOC96_08320	COG3708	Transcriptional regulator
FOC96_08320	COG2207	Transcriptional regulator
FOC96_08325	COG1136	(ABC) transporter
FOC96_08330	COG0577	efflux transmembrane transporter activity
FOC96_08340	COG0586	Pfam SNARE associated Golgi protein
FOC96_08370	COG1597	lipid kinase activity
FOC96_08400	COG0745	RESPONSE REGULATOR receiver
FOC96_08405	COG5002	protein histidine kinase activity
FOC96_08410	COG3859	Proton-coupled thiamine transporter YuaJ
FOC96_08475	COG1842	Phage shock protein A
FOC96_08500	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_08520	COG1294	oxidase, subunit
FOC96_08525	COG1271	oxidase subunit
FOC96_08530	COG0288	reversible hydration of carbon dioxide
FOC96_08560	COG0494	nUDIX hydrolase
FOC96_08570	COG0546	phosphoglycolate phosphatase activity
FOC96_08585	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC96_08590	COG1116	anion transmembrane transporter activity
FOC96_08595	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC96_08610	COG1368	sulfuric ester hydrolase activity
FOC96_08615	COG2267	carboxylic ester hydrolase activity
FOC96_08620	COG4191	Histidine kinase
FOC96_08625	COG5002	protein histidine kinase activity
FOC96_08635	COG1349	DNA-binding transcription factor activity
FOC96_08640	COG0546	phosphoglycolate phosphatase activity
FOC96_08705	COG0521	Mo-molybdopterin cofactor biosynthetic process
FOC96_08715	COG0438	transferase activity, transferring glycosyl groups
FOC96_08720	COG0671	phosphoesterase, PA-phosphatase related
FOC96_08725	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FOC96_08730	COG2267	carboxylic ester hydrolase activity
FOC96_08755	COG5504	Zn-dependent protease
FOC96_08765	COG1794	racemase activity, acting on amino acids and derivatives
FOC96_08780	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
FOC96_08785	COG1242	4 iron, 4 sulfur cluster binding
FOC96_08805	COG1136	(ABC) transporter
FOC96_08815	COG0582	viral genome integration into host DNA
FOC96_08820	COG0490	domain, Protein
FOC96_08825	COG0475	glutathione-regulated potassium exporter activity
FOC96_08830	COG2814	Major facilitator Superfamily
FOC96_08875	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FOC96_08885	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC96_08905	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FOC96_08910	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC96_08920	COG0303	'Molybdopterin
FOC96_08925	COG1763	Mo-molybdopterin cofactor biosynthetic process
FOC96_08930	COG0314	molybdopterin synthase activity
FOC96_08955	COG1329	Transcriptional regulator
FOC96_08975	COG3832	glyoxalase III activity
FOC96_08985	COG2814	Major facilitator Superfamily
FOC96_08990	COG2081	HI0933 family
FOC96_08995	COG2244	polysaccharide biosynthetic process
FOC96_09000	COG1187	pseudouridine synthase activity
FOC96_09005	COG1349	DNA-binding transcription factor activity
FOC96_09010	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC96_09020	COG1523	belongs to the glycosyl hydrolase 13 family
FOC96_09025	COG0510	thiamine kinase activity
FOC96_09040	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_09050	COG1363	Peptidase, m42
FOC96_09055	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
FOC96_09060	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC96_09070	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC96_09080	COG1674	ftsk spoiiie
FOC96_09100	COG1695	Transcriptional regulator
FOC96_09105	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_09120	COG1136	(ABC) transporter
FOC96_09125	COG0577	efflux transmembrane transporter activity
FOC96_09145	COG2309	aminopeptidase activity
FOC96_09155	COG3118	belongs to the thioredoxin family
FOC96_09160	COG4851	CamS sex pheromone cAM373 precursor
FOC96_09165	COG1609	Transcriptional regulator
FOC96_09200	COG0666	response to abiotic stimulus
FOC96_09210	COG0745	RESPONSE REGULATOR receiver
FOC96_09225	COG0123	including yeast histone deacetylase and acetoin utilization protein
FOC96_09230	COG0517	IMP dehydrogenase activity
FOC96_09235	COG0454	-acetyltransferase
FOC96_09240	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC96_09250	COG1595	DNA-templated transcription, initiation
FOC96_09300	COG0626	cystathionine gamma-synthase activity
FOC96_09305	COG1956	GAF domain-containing protein
FOC96_09310	COG1309	transcriptional regulator
FOC96_09315	COG0697	spore germination
FOC96_09320	COG0583	DNA-binding transcription factor activity
FOC96_09330	COG1104	cysteine desulfurase activity
FOC96_09345	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC96_09355	COG1574	metal-dependent hydrolase with the TIM-barrel fold
FOC96_09370	COG3874	Sporulation protein YtfJ
FOC96_09375	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
FOC96_09380	COG0827	DNA restriction-modification system
FOC96_09400	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_09450	COG4974	Belongs to the 'phage' integrase family
FOC96_09460	COG0589	response to stress
FOC96_09465	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_09480	COG1476	TRANSCRIPTIONal
FOC96_09490	COG0662	Cupin 2, conserved barrel domain protein
FOC96_09535	COG0006	proline dipeptidase activity
FOC96_09550	COG4109	DRTGG domain
FOC96_09570	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
FOC96_09585	COG0587	DNA-directed DNA polymerase activity
FOC96_09590	COG0281	malic enzyme
FOC96_09595	COG1725	Transcriptional regulator
FOC96_09620	COG3030	protein affecting phage T7 exclusion by the F plasmid
FOC96_09625	COG0628	permease
FOC96_09635	COG0372	Belongs to the citrate synthase family
FOC96_09640	COG0538	isocitrate dehydrogenase activity
FOC96_09660	COG0745	RESPONSE REGULATOR receiver
FOC96_09665	COG5002	protein histidine kinase activity
FOC96_09670	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC96_09670	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC96_09680	COG1971	Probably functions as a manganese efflux pump
FOC96_09685	COG0237	dephospho-CoA kinase activity
FOC96_09690	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FOC96_09695	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
FOC96_09705	COG3611	Membrane attachment protein
FOC96_09710	COG1484	DNA-dependent DNA replication
FOC96_09720	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FOC96_09745	COG1363	Peptidase, m42
FOC96_09750	COG1309	transcriptional regulator
FOC96_09755	COG1566	PFAM secretion protein HlyD family protein
FOC96_09760	COG2814	Major facilitator Superfamily
FOC96_09795	COG1418	mRNA catabolic process
FOC96_09805	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC96_09850	COG1286	toxin biosynthetic process
FOC96_09855	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FOC96_09855	COG1796	DNA polymerase
FOC96_09865	COG1187	pseudouridine synthase activity
FOC96_09870	COG1114	Component of the transport system for branched-chain amino acids
FOC96_09875	COG5386	Cell surface protein
FOC96_09880	COG5386	Cell surface protein
FOC96_09895	COG1120	ATPase activity
FOC96_09900	COG4509	Sortase family
FOC96_09915	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
FOC96_09920	COG4895	conserved protein (DUF2196)
FOC96_09930	COG0745	RESPONSE REGULATOR receiver
FOC96_09935	COG2205	protein histidine kinase activity
FOC96_09940	COG1131	(ABC) transporter
FOC96_09965	COG2318	DinB family
FOC96_09985	COG0318	PFAM AMP-dependent synthetase and ligase
FOC96_09990	COG1309	transcriptional regulator
FOC96_09995	COG1024	Enoyl-CoA hydratase
FOC96_10000	COG2086	electron transfer activity
FOC96_10005	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
FOC96_10010	COG3118	belongs to the thioredoxin family
FOC96_10020	COG1719	4-vinyl reductase, 4VR
FOC96_10025	COG2009	succinate dehydrogenase
FOC96_10030	COG1053	succinate dehydrogenase
FOC96_10035	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FOC96_10040	COG0824	Thioesterase
FOC96_10045	COG1876	peptidase activity
FOC96_10050	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FOC96_10055	COG1360	Flagellar Motor Protein
FOC96_10060	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
FOC96_10065	COG4152	abc transporter atp-binding protein
FOC96_10070	COG1668	transmembrane transport
FOC96_10075	COG1959	2 iron, 2 sulfur cluster binding
FOC96_10085	COG0697	spore germination
FOC96_10090	COG1396	sequence-specific DNA binding
FOC96_10100	COG0402	S-adenosylhomocysteine deaminase activity
FOC96_10105	COG2233	PERMEase
FOC96_10110	COG2197	response regulator
FOC96_10125	COG1309	transcriptional regulator
FOC96_10145	COG5401	PFAM Sporulation and spore germination
FOC96_10160	COG0622	Phosphoesterase
FOC96_10205	COG0470	DNA polymerase III
FOC96_10205	COG1067	ATP-dependent peptidase activity
FOC96_10220	COG1764	response to oxidative stress
FOC96_10225	COG1846	Transcriptional regulator
FOC96_10235	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FOC96_10245	COG1587	Uroporphyrinogen-III synthase
FOC96_10250	COG0113	porphobilinogen synthase activity
FOC96_10260	COG1388	LysM domain
FOC96_10275	COG0285	dihydrofolate synthase activity
FOC96_10295	COG4974	Belongs to the 'phage' integrase family
FOC96_10330	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC96_10345	COG2003	Belongs to the UPF0758 family
FOC96_10410	COG1077	Cell shape determining protein MreB Mrl
FOC96_10430	COG2894	cell division
FOC96_10435	COG0739	heme binding
FOC96_10440	COG1994	Peptidase M50
FOC96_10445	COG1530	ribonuclease E activity
FOC96_10455	COG2868	ribosomal protein
FOC96_10465	COG3290	protein histidine kinase activity
FOC96_10475	COG0745	RESPONSE REGULATOR receiver
FOC96_10480	COG5002	protein histidine kinase activity
FOC96_10485	COG1136	(ABC) transporter
FOC96_10490	COG0577	efflux transmembrane transporter activity
FOC96_10495	COG0577	efflux transmembrane transporter activity
FOC96_10500	COG0077	Prephenate dehydratase
FOC96_10505	COG2258	MOSC domain
FOC96_10510	COG1827	regulation of RNA biosynthetic process
FOC96_10515	COG1104	cysteine desulfurase activity
FOC96_10520	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FOC96_10525	COG0157	Belongs to the NadC ModD family
FOC96_10550	COG0640	Transcriptional regulator
FOC96_10555	COG0697	spore germination
FOC96_10565	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
FOC96_10595	COG1862	Preprotein translocase
FOC96_10605	COG2323	membrane
FOC96_10610	COG2244	polysaccharide biosynthetic process
FOC96_10620	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FOC96_10620	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FOC96_10625	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FOC96_10630	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FOC96_10630	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
FOC96_10640	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FOC96_10665	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FOC96_10675	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FOC96_10680	COG1959	2 iron, 2 sulfur cluster binding
FOC96_10685	COG1104	cysteine desulfurase activity
FOC96_10700	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FOC96_10720	COG0628	permease
FOC96_10750	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FOC96_10755	COG4122	O-methyltransferase activity
FOC96_10780	COG0768	penicillin binding
FOC96_10805	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FOC96_10810	COG0626	cystathionine gamma-synthase activity
FOC96_10815	COG1454	alcohol dehydrogenase
FOC96_10815	COG1012	belongs to the aldehyde dehydrogenase family
FOC96_10825	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_10865	COG2259	Doxx family
FOC96_10870	COG2514	catechol 2,3-dioxygenase activity
FOC96_10880	COG3186	Phenylalanine-4-hydroxylase
FOC96_10885	COG1404	Belongs to the peptidase S8 family
FOC96_10920	COG2267	carboxylic ester hydrolase activity
FOC96_10930	COG1785	Belongs to the alkaline phosphatase family
FOC96_10940	COG2357	RelA SpoT domain protein
FOC96_10945	COG0778	Nitroreductase
FOC96_10955	COG1595	DNA-templated transcription, initiation
FOC96_10980	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
FOC96_10985	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
FOC96_10995	COG1534	Rna-binding protein
FOC96_11005	COG1713	HD superfamily hydrolase involved in NAD metabolism
FOC96_11010	COG0799	negative regulation of ribosome biogenesis
FOC96_11015	COG2226	methyltransferase
FOC96_11020	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC96_11025	COG1555	photosystem II stabilization
FOC96_11025	COG1596	polysaccharide export
FOC96_11030	COG2131	deaminase
FOC96_11035	COG2333	competence protein COMEC
FOC96_11035	COG0658	competence protein
FOC96_11045	COG1466	dna polymerase III delta subunit
FOC96_11070	COG1733	regulation of RNA biosynthetic process
FOC96_11075	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FOC96_11105	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FOC96_11110	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FOC96_11115	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FOC96_11120	COG1610	YqeY-like protein
FOC96_11135	COG1702	phosphate starvation-inducible protein PhoH
FOC96_11140	COG1480	7TM receptor with intracellular HD hydrolase
FOC96_11150	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FOC96_11155	COG0295	cytidine deaminase activity
FOC96_11160	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FOC96_11175	COG0517	IMP dehydrogenase activity
FOC96_11190	COG0358	DNA primase activity
FOC96_11195	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FOC96_11200	COG2010	Cytochrome c
FOC96_11205	COG2384	SAM-dependent methyltransferase
FOC96_11210	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FOC96_11240	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_11245	COG1121	(ABC) transporter
FOC96_11250	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FOC96_11255	COG0735	belongs to the Fur family
FOC96_11280	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC96_11285	COG0477	Major facilitator Superfamily
FOC96_11295	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FOC96_11300	COG0573	inorganic phosphate transmembrane transporter activity
FOC96_11305	COG0581	inorganic phosphate transmembrane transporter activity
FOC96_11315	COG0704	Plays a role in the regulation of phosphate uptake
FOC96_11320	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FOC96_11325	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FOC96_11330	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FOC96_11335	COG4483	Protein conserved in bacteria
FOC96_11340	COG1940	carbohydrate kinase activity
FOC96_11350	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_11370	COG0626	cystathionine gamma-synthase activity
FOC96_11375	COG0626	cystathionine gamma-synthase activity
FOC96_11380	COG0646	methionine synthase
FOC96_11380	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
FOC96_11385	COG1410	methionine synthase
FOC96_11385	COG0646	methionine synthase
FOC96_11435	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FOC96_11440	COG1459	type II secretion system
FOC96_11450	COG4970	Tfp pilus assembly protein FimT
FOC96_11515	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FOC96_11545	COG1725	Transcriptional regulator
FOC96_11550	COG1131	(ABC) transporter
FOC96_11585	COG2076	Multidrug Resistance protein
FOC96_11590	COG2076	Multidrug Resistance protein
FOC96_11600	COG1609	Transcriptional regulator
FOC96_11605	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC96_11610	COG0095	Lipoate-protein ligase
FOC96_11625	COG1695	Transcriptional regulator
FOC96_11640	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FOC96_11650	COG3872	metal-dependent enzyme
FOC96_11665	COG0006	proline dipeptidase activity
FOC96_11690	COG3854	ATPases associated with a variety of cellular activities
FOC96_11735	COG0511	ligase activity, forming carbon-carbon bonds
FOC96_11740	COG0439	Biotin carboxylase
FOC96_11745	COG1302	Protein conserved in bacteria
FOC96_11770	COG0142	geranyltranstransferase activity
FOC96_11780	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
FOC96_11790	COG0497	DNA recombination
FOC96_11795	COG0750	zinc metalloprotease
FOC96_11800	COG0745	RESPONSE REGULATOR receiver
FOC96_11810	COG3093	addiction module antidote protein HigA
FOC96_11815	COG0584	glycerophosphoryl diester phosphodiesterase
FOC96_11825	COG3829	transcription factor binding
FOC96_11825	COG3290	protein histidine kinase activity
FOC96_11830	COG0280	phosphate acetyltransferase
FOC96_11845	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC96_11850	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC96_11855	COG0022	dehydrogenase e1 component
FOC96_11860	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC96_11865	COG0772	Belongs to the SEDS family
FOC96_11870	COG2816	NAD+ diphosphatase activity
FOC96_11885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC96_11890	COG0765	amino acid transport
FOC96_11895	COG1126	abc transporter atp-binding protein
FOC96_11900	COG4129	membrane
FOC96_11905	COG1376	ErfK ybiS ycfS ynhG family protein
FOC96_11920	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_11925	COG2195	Cleaves the N-terminal amino acid of tripeptides
FOC96_11935	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC96_11955	COG1760	l-serine dehydratase
FOC96_11960	COG1760	l-serine dehydratase
FOC96_11965	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC96_11970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_11975	COG0300	oxidoreductase activity
FOC96_11990	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
FOC96_12000	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC96_12020	COG1522	sequence-specific DNA binding
FOC96_12030	COG0737	Belongs to the 5'-nucleotidase family
FOC96_12045	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC96_12060	COG2226	methyltransferase
FOC96_12060	COG1073	alpha beta
FOC96_12065	COG4106	trans-aconitate 2-methyltransferase activity
FOC96_12090	COG0307	riboflavin synthase, alpha
FOC96_12095	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FOC96_12095	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FOC96_12110	COG1073	alpha beta
FOC96_12115	COG0456	acetyltransferase
FOC96_12120	COG1609	Transcriptional regulator
FOC96_12125	COG2056	Na+-H+ antiporter family
FOC96_12130	COG0596	Alpha beta hydrolase
FOC96_12140	COG1525	nuclease
FOC96_12140	COG4085	toxin activity
FOC96_12140	COG0737	Belongs to the 5'-nucleotidase family
FOC96_12150	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC96_12150	COG0456	acetyltransferase
FOC96_12155	COG0656	L-ascorbic acid biosynthetic process
FOC96_12160	COG0667	Aldo Keto reductase
FOC96_12180	COG1300	Membrane
FOC96_12185	COG0735	belongs to the Fur family
FOC96_12195	COG4974	Belongs to the 'phage' integrase family
FOC96_12220	COG0598	Magnesium transport protein CorA
FOC96_12235	COG1846	Transcriptional regulator
FOC96_12250	COG1131	(ABC) transporter
FOC96_12255	COG1725	Transcriptional regulator
FOC96_12260	COG1686	Belongs to the peptidase S11 family
FOC96_12280	COG0733	neurotransmitter:sodium symporter activity
FOC96_12305	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC96_12320	COG0697	spore germination
FOC96_12325	COG0561	phosphatase activity
FOC96_12330	COG4086	secreted protein
FOC96_12335	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FOC96_12340	COG0456	acetyltransferase
FOC96_12345	COG1547	Domain of unknown function (DUF309)
FOC96_12370	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FOC96_12380	COG2188	Transcriptional regulator
FOC96_12390	COG3711	transcriptional antiterminator
FOC96_12395	COG2190	(PTS) system
FOC96_12395	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC96_12395	COG1263	PTS System
FOC96_12420	COG0778	Nitroreductase
FOC96_12425	COG2203	Gaf domain
FOC96_12425	COG2199	diguanylate cyclase activity
FOC96_12430	COG2084	Dehydrogenase
FOC96_12465	COG0436	Aminotransferase
FOC96_12470	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FOC96_12490	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_12495	COG1695	Transcriptional regulator
FOC96_12525	COG0183	Belongs to the thiolase family
FOC96_12570	COG3842	ATPase activity
FOC96_12575	COG0366	Alpha amylase catalytic
FOC96_12585	COG2182	Extracellular solute-binding protein
FOC96_12590	COG1175	transmembrane transport
FOC96_12595	COG3833	ABC-type maltose transport systems, permease component
FOC96_12600	COG1609	Transcriptional regulator
FOC96_12605	COG0436	Aminotransferase
FOC96_12615	COG2205	protein histidine kinase activity
FOC96_12625	COG3209	COG3209 Rhs family protein
FOC96_12645	COG2814	Major facilitator Superfamily
FOC96_12680	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
FOC96_12690	COG1408	metallophosphoesterase
FOC96_12695	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_12700	COG2200	EAL domain
FOC96_12715	COG4703	Protein of unknown function (DUF1797)
FOC96_12725	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
FOC96_12735	COG0517	IMP dehydrogenase activity
FOC96_12740	COG0583	DNA-binding transcription factor activity
FOC96_12760	COG0569	domain protein
FOC96_12765	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FOC96_12775	COG0561	phosphatase activity
FOC96_12780	COG0242	peptide deformylase activity
FOC96_12790	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC96_12795	COG0022	dehydrogenase e1 component
FOC96_12845	COG1982	Orn Lys Arg decarboxylase major
FOC96_12865	COG0483	inositol monophosphate 1-phosphatase activity
FOC96_12890	COG4896	Protein conserved in bacteria
FOC96_12900	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FOC96_12905	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FOC96_12915	COG0772	Belongs to the SEDS family
FOC96_12920	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FOC96_12955	COG3336	cytochrome c oxidase
FOC96_12970	COG2340	Cysteine-rich secretory protein family
FOC96_12985	COG0406	alpha-ribazole phosphatase activity
FOC96_12990	COG3679	Belongs to the UPF0342 family
FOC96_13005	COG0742	ribosomal rna small subunit methyltransferase
FOC96_13015	COG3314	Sporulation integral membrane protein YlbJ
FOC96_13020	COG1752	Esterase of the alpha-beta hydrolase superfamily
FOC96_13025	COG3480	Lon protease (S16) C-terminal proteolytic domain
FOC96_13035	COG1399	metal-binding, possibly nucleic acid-binding protein
FOC96_13040	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FOC96_13055	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FOC96_13070	COG4839	cell division protein FtsL
FOC96_13080	COG0768	penicillin binding
FOC96_13085	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FOC96_13100	COG0772	Belongs to the SEDS family
FOC96_13110	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FOC96_13115	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FOC96_13120	COG0849	cell division
FOC96_13125	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FOC96_13135	COG1191	sigma factor activity
FOC96_13140	COG1191	sigma factor activity
FOC96_13145	COG1873	PFAM PRC-barrel domain
FOC96_13155	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FOC96_13165	COG0762	integral membrane protein
FOC96_13170	COG2302	S4 RNA-binding domain
FOC96_13175	COG3599	regulation of cell shape
FOC96_13195	COG0564	pseudouridine synthase activity
FOC96_13260	COG3069	C4-dicarboxylate transmembrane transporter activity
FOC96_13280	COG0006	proline dipeptidase activity
FOC96_13290	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
FOC96_13295	COG1561	YicC-like family, N-terminal region
FOC96_13315	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FOC96_13320	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FOC96_13325	COG0242	peptide deformylase activity
FOC96_13335	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FOC96_13335	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FOC96_13345	COG0631	protein serine/threonine phosphatase activity
FOC96_13350	COG2815	serine threonine protein kinase
FOC96_13350	COG0515	serine threonine protein kinase
FOC96_13355	COG1162	GTPase activity
FOC96_13360	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FOC96_13365	COG1564	THIamine pyrophosphokinase
FOC96_13380	COG1302	Protein conserved in bacteria
FOC96_13385	COG1461	Dihydroxyacetone kinase
FOC96_13390	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FOC96_13405	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FOC96_13410	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_13415	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FOC96_13425	COG1196	nuclear chromosome segregation
FOC96_13430	COG0552	protein localization to endoplasmic reticulum
FOC96_13440	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FOC96_13450	COG1837	Belongs to the UPF0109 family
FOC96_13490	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FOC96_13495	COG0758	DNA mediated transformation
FOC96_13500	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FOC96_13510	COG4974	Belongs to the 'phage' integrase family
FOC96_13540	COG0528	UMP kinase activity
FOC96_13555	COG4589	Belongs to the CDS family
FOC96_13565	COG0750	zinc metalloprotease
FOC96_13595	COG0195	Participates in both transcription termination and antitermination
FOC96_13600	COG2740	Nucleic-acid-binding protein implicated in transcription termination
FOC96_13605	COG1358	cellular component organization or biogenesis
FOC96_13615	COG1550	Protein conserved in bacteria
FOC96_13630	COG0196	riboflavin kinase activity
FOC96_13645	COG0726	polysaccharide deacetylase
FOC96_13650	COG0612	Peptidase, M16
FOC96_13655	COG1873	PFAM PRC-barrel domain
FOC96_13660	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC96_13665	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FOC96_13670	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FOC96_13675	COG0527	aspartate kinase activity
FOC96_13685	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FOC96_13690	COG0740	serine-type endopeptidase activity
FOC96_13700	COG1674	ftsk spoiiie
FOC96_13705	COG2188	Transcriptional regulator
FOC96_13730	COG0612	Peptidase, M16
FOC96_13735	COG0612	Peptidase, M16
FOC96_13740	COG0300	oxidoreductase activity
FOC96_13755	COG1426	Protein conserved in bacteria
FOC96_13760	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FOC96_13785	COG1692	metallophosphoesterase
FOC96_13790	COG2359	stage V sporulation protein S
FOC96_13800	COG0674	pyruvate-flavodoxin oxidoreductase activity
FOC96_13800	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
FOC96_13805	COG1013	pyruvate-flavodoxin oxidoreductase activity
FOC96_13815	COG4550	Control of competence regulator ComK, YlbF/YmcA
FOC96_13835	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
FOC96_13845	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FOC96_13850	COG1368	sulfuric ester hydrolase activity
FOC96_13860	COG3773	Cell wall hydrolase
FOC96_13865	COG1404	Belongs to the peptidase S8 family
FOC96_13890	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_13950	COG3300	MHYT domain
FOC96_13950	COG5001	Diguanylate cyclase
FOC96_13955	COG0346	lactoylglutathione lyase activity
FOC96_13960	COG2267	carboxylic ester hydrolase activity
FOC96_13975	COG2364	Membrane
FOC96_13985	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FOC96_13990	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FOC96_13995	COG2169	Transcriptional regulator
FOC96_14000	COG0708	Exodeoxyribonuclease III
FOC96_14005	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_14010	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_14015	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_14020	COG1120	ATPase activity
FOC96_14025	COG2819	hydrolase of the alpha beta superfamily
FOC96_14035	COG1937	Protein conserved in bacteria
FOC96_14040	COG2608	mercury ion transmembrane transporter activity
FOC96_14045	COG2217	Heavy metal translocating P-type atpase
FOC96_14060	COG2116	formate transmembrane transporter activity
FOC96_14065	COG1408	metallophosphoesterase
FOC96_14080	COG1113	amino acid transport
FOC96_14090	COG2322	membrane
FOC96_14095	COG1979	alcohol dehydrogenase
FOC96_14100	COG1349	DNA-binding transcription factor activity
FOC96_14105	COG1105	Belongs to the carbohydrate kinase PfkB family
FOC96_14110	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FOC96_14110	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC96_14110	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FOC96_14115	COG3584	3D domain protein
FOC96_14115	COG1388	LysM domain
FOC96_14145	COG0464	growth
FOC96_14150	COG2860	membrane
FOC96_14155	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FOC96_14160	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
FOC96_14165	COG0789	Transcriptional regulator
FOC96_14170	COG0174	glutamine synthetase
FOC96_14180	COG1695	Transcriptional regulator
FOC96_14200	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FOC96_14210	COG0737	Belongs to the 5'-nucleotidase family
FOC96_14225	COG3639	organic phosphonate transmembrane transporter activity
FOC96_14250	COG1132	(ABC) transporter
FOC96_14255	COG1132	(ABC) transporter
FOC96_14270	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC96_14270	COG3409	Peptidoglycan-binding domain 1 protein
FOC96_14280	COG0730	response to heat
FOC96_14295	COG1346	cytolysis
FOC96_14305	COG0583	DNA-binding transcription factor activity
FOC96_14315	COG1131	(ABC) transporter
FOC96_14325	COG1473	amidohydrolase
FOC96_14335	COG0785	Cytochrome C biogenesis protein
FOC96_14340	COG4846	Membrane protein involved in cytochrome C biogenesis
FOC96_14380	COG2226	methyltransferase
FOC96_14405	COG0010	Belongs to the arginase family
FOC96_14410	COG1329	Transcriptional regulator
FOC96_14415	COG1902	pentaerythritol trinitrate reductase activity
FOC96_14420	COG0069	glutamate synthase activity
FOC96_14425	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC96_14430	COG0346	lactoylglutathione lyase activity
FOC96_14435	COG0400	carboxylic ester hydrolase activity
FOC96_14440	COG5002	protein histidine kinase activity
FOC96_14450	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_14500	COG0318	PFAM AMP-dependent synthetase and ligase
FOC96_14505	COG1268	BioY protein
FOC96_14510	COG0318	PFAM AMP-dependent synthetase and ligase
FOC96_14515	COG0183	Belongs to the thiolase family
FOC96_14530	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FOC96_14570	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FOC96_14610	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC96_14640	COG0824	Thioesterase
FOC96_14645	COG4841	protein insertion into membrane
FOC96_14665	COG0745	RESPONSE REGULATOR receiver
FOC96_14670	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC96_14675	COG1832	CoA-binding protein
FOC96_14680	COG0187	DNA topoisomerase II activity
FOC96_14685	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FOC96_14695	COG0673	inositol 2-dehydrogenase activity
FOC96_14705	COG1131	(ABC) transporter
FOC96_14725	COG1595	DNA-templated transcription, initiation
FOC96_14735	COG1316	TRANSCRIPTIONal
FOC96_14740	COG1301	dicarboxylic acid transport
FOC96_14745	COG4166	transmembrane transport
FOC96_14750	COG4166	transmembrane transport
FOC96_14755	COG4166	transmembrane transport
FOC96_14760	COG2226	methyltransferase
FOC96_14800	COG0697	spore germination
FOC96_14805	COG3383	formate dehydrogenase (NAD+) activity
FOC96_14810	COG2427	Protein of unknown function (DUF1641)
FOC96_14815	COG5609	conserved protein (DUF2294)
FOC96_14820	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FOC96_14830	COG2116	formate transmembrane transporter activity
FOC96_14835	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC96_14840	COG0303	'Molybdopterin
FOC96_14845	COG0314	molybdopterin synthase activity
FOC96_14855	COG0489	protein tyrosine kinase activity
FOC96_14870	COG3326	Membrane
FOC96_14875	COG2962	Rard protein
FOC96_14880	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
FOC96_14885	COG1657	PFAM Prenyltransferase squalene oxidase
FOC96_14895	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_14900	COG1012	belongs to the aldehyde dehydrogenase family
FOC96_14910	COG4145	pantothenate transmembrane transporter activity
FOC96_14925	COG0165	Argininosuccinate lyase
FOC96_14935	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_14965	COG0716	FMN binding
FOC96_15000	COG2720	vancomycin resistance protein
FOC96_15005	COG2514	catechol 2,3-dioxygenase activity
FOC96_15015	COG1285	pathogenesis
FOC96_15025	COG1024	Enoyl-CoA hydratase
FOC96_15030	COG1216	Glycosyl transferase, family 2
FOC96_15065	COG0277	FAD linked oxidase domain protein
FOC96_15070	COG0385	Bile acid
FOC96_15080	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC96_15085	COG2808	Putative FMN-binding domain
FOC96_15095	COG0457	Tetratricopeptide repeat
FOC96_15105	COG0604	alcohol dehydrogenase
FOC96_15110	COG0640	Transcriptional regulator
FOC96_15135	COG0584	glycerophosphoryl diester phosphodiesterase
FOC96_15165	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC96_15170	COG1164	Oligoendopeptidase f
FOC96_15175	COG2162	N-hydroxyarylamine O-acetyltransferase activity
FOC96_15195	COG1193	negative regulation of DNA recombination
FOC96_15215	COG0583	DNA-binding transcription factor activity
FOC96_15235	COG0384	phenazine biosynthesis protein PhzF
FOC96_15240	COG3739	integral membrane protein
FOC96_15245	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_15250	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_15255	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_15270	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FOC96_15275	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FOC96_15305	COG2814	Major facilitator Superfamily
FOC96_15310	COG1113	amino acid transport
FOC96_15350	COG2072	flavoprotein involved in K transport
FOC96_15385	COG3757	hydrolase, family 25
FOC96_15385	COG3409	Peptidoglycan-binding domain 1 protein
FOC96_15390	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_15400	COG1151	hydroxylamine reductase activity
FOC96_15450	COG3152	Membrane
FOC96_15470	COG1309	transcriptional regulator
FOC96_15475	COG1266	CAAX protease self-immunity
FOC96_15485	COG1191	sigma factor activity
FOC96_15515	COG1733	regulation of RNA biosynthetic process
FOC96_15520	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC96_15525	COG0318	PFAM AMP-dependent synthetase and ligase
FOC96_15540	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_15550	COG0384	phenazine biosynthesis protein PhzF
FOC96_15570	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_15585	COG0673	inositol 2-dehydrogenase activity
FOC96_15590	COG2188	Transcriptional regulator
FOC96_15600	COG1393	Belongs to the ArsC family
FOC96_15625	COG0814	amino acid
FOC96_15645	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FOC96_15655	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
FOC96_15660	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FOC96_15670	COG1070	Carbohydrate kinase
FOC96_15675	COG2706	6-phosphogluconolactonase activity
FOC96_15680	COG3813	Protein conserved in bacteria
FOC96_15685	COG1357	PFAM Pentapeptide repeats (8 copies)
FOC96_15690	COG0697	spore germination
FOC96_15695	COG0789	Transcriptional regulator
FOC96_15700	COG1253	flavin adenine dinucleotide binding
FOC96_15730	COG0477	Major facilitator Superfamily
FOC96_15740	COG2226	methyltransferase
FOC96_15760	COG0628	permease
FOC96_15780	COG1136	(ABC) transporter
FOC96_15780	COG0577	efflux transmembrane transporter activity
FOC96_15790	COG0110	maltose O-acetyltransferase activity
FOC96_15795	COG0738	Major facilitator superfamily
FOC96_15800	COG1940	carbohydrate kinase activity
FOC96_15805	COG0346	lactoylglutathione lyase activity
FOC96_15850	COG1011	Hydrolase
FOC96_15875	COG1131	(ABC) transporter
FOC96_15885	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_15905	COG0778	Nitroreductase
FOC96_15910	COG1733	regulation of RNA biosynthetic process
FOC96_15930	COG2197	response regulator
FOC96_15940	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FOC96_15955	COG0506	proline dehydrogenase activity
FOC96_15960	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_15965	COG0803	Belongs to the bacterial solute-binding protein 9 family
FOC96_15965	COG3443	Belongs to the bacterial solute-binding protein 9 family
FOC96_15985	COG0789	Transcriptional regulator
FOC96_16010	COG1288	antiporter activity
FOC96_16015	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC96_16030	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FOC96_16065	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC96_16075	COG2031	fatty acid transporter
FOC96_16090	COG1309	transcriptional regulator
FOC96_16095	COG2076	Multidrug Resistance protein
FOC96_16115	COG1131	(ABC) transporter
FOC96_16120	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FOC96_16130	COG2814	Major facilitator Superfamily
FOC96_16135	COG1846	Transcriptional regulator
FOC96_16145	COG0477	Major facilitator Superfamily
FOC96_16185	COG3409	Peptidoglycan-binding domain 1 protein
FOC96_16185	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC96_16215	COG2207	Transcriptional regulator
FOC96_16215	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_16220	COG0662	Cupin 2, conserved barrel domain protein
FOC96_16240	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC96_16255	COG0531	amino acid
FOC96_16260	COG1522	sequence-specific DNA binding
FOC96_16265	COG1335	isochorismatase
FOC96_16275	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
FOC96_16280	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FOC96_16285	COG2184	nucleotidyltransferase activity
FOC96_16290	COG1760	l-serine dehydratase
FOC96_16295	COG1760	l-serine dehydratase
FOC96_16300	COG0814	amino acid
FOC96_16330	COG4974	Belongs to the 'phage' integrase family
FOC96_16355	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC96_16380	COG0457	Tetratricopeptide repeat
FOC96_16385	COG1609	Transcriptional regulator
FOC96_16390	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FOC96_16395	COG0561	phosphatase activity
FOC96_16400	COG0673	inositol 2-dehydrogenase activity
FOC96_16405	COG0738	Major facilitator superfamily
FOC96_16445	COG0584	glycerophosphoryl diester phosphodiesterase
FOC96_16450	COG3227	Zinc metalloprotease (Elastase)
FOC96_16455	COG1252	NADH dehydrogenase
FOC96_16470	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC96_16485	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_16490	COG2808	Putative FMN-binding domain
FOC96_16495	COG0456	acetyltransferase
FOC96_16500	COG1846	Transcriptional regulator
FOC96_16505	COG2364	Membrane
FOC96_16515	COG5002	protein histidine kinase activity
FOC96_16515	COG3850	Histidine kinase
FOC96_16530	COG0577	efflux transmembrane transporter activity
FOC96_16550	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
FOC96_16555	COG0789	Transcriptional regulator
FOC96_16565	COG2309	aminopeptidase activity
FOC96_16580	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC96_16590	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC96_16595	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_16620	COG2515	1-aminocyclopropane-1-carboxylate deaminase
FOC96_16645	COG5002	protein histidine kinase activity
FOC96_16645	COG3850	Histidine kinase
FOC96_16650	COG0745	RESPONSE REGULATOR receiver
FOC96_16675	COG2814	Major facilitator Superfamily
FOC96_16695	COG0346	lactoylglutathione lyase activity
FOC96_16715	COG0443	Heat shock 70 kDa protein
FOC96_16730	COG0640	Transcriptional regulator
FOC96_16735	COG0346	lactoylglutathione lyase activity
FOC96_16740	COG0798	PFAM Bile acid sodium symporter
FOC96_16765	COG1121	(ABC) transporter
FOC96_16770	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FOC96_16775	COG0803	Belongs to the bacterial solute-binding protein 9 family
FOC96_16790	COG0577	efflux transmembrane transporter activity
FOC96_16795	COG1136	(ABC) transporter
FOC96_16800	COG4641	Protein conserved in bacteria
FOC96_16805	COG2267	carboxylic ester hydrolase activity
FOC96_16810	COG1575	Belongs to the MenA family. Type 1 subfamily
FOC96_16820	COG0714	Associated with various cellular activities
FOC96_16835	COG5609	conserved protein (DUF2294)
FOC96_16840	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FOC96_16850	COG0288	reversible hydration of carbon dioxide
FOC96_16855	COG0657	acetylesterase activity
FOC96_16865	COG2814	Major facilitator Superfamily
FOC96_16905	COG0415	Belongs to the DNA photolyase family
FOC96_16940	COG0598	Magnesium transport protein CorA
FOC96_16960	COG2329	Antibiotic biosynthesis monooxygenase
FOC96_16965	COG0737	Belongs to the 5'-nucleotidase family
FOC96_17000	COG1115	amino acid carrier protein
FOC96_17005	COG2066	Belongs to the glutaminase family
FOC96_17010	COG4191	Histidine kinase
FOC96_17015	COG0784	Response regulator, receiver
FOC96_17025	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC96_17030	COG0531	amino acid
FOC96_17035	COG0322	excinuclease ABC activity
FOC96_17055	COG2207	Transcriptional regulator
FOC96_17120	COG1396	sequence-specific DNA binding
FOC96_17125	COG0252	asparaginase activity
FOC96_17130	COG1027	Aspartate ammonia-lyase
FOC96_17140	COG1063	alcohol dehydrogenase
FOC96_17170	COG1113	amino acid transport
FOC96_17175	COG1280	lysine exporter protein (LysE YggA)
FOC96_17180	COG3403	YqcI/YcgG family
FOC96_17185	COG5577	PFAM Coat F domain
FOC96_17200	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_17205	COG3848	Pyruvate phosphate dikinase
FOC96_17205	COG0574	Belongs to the PEP-utilizing enzyme family
FOC96_17250	COG1960	acyl-CoA dehydrogenase activity
FOC96_17260	COG0640	Transcriptional regulator
FOC96_17265	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC96_17280	COG1414	Transcriptional regulator
FOC96_17285	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FOC96_17290	COG1984	allophanate hydrolase subunit 2
FOC96_17315	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
FOC96_17350	COG4335	DNA alkylation repair
FOC96_17360	COG0833	amino acid
FOC96_17370	COG0730	response to heat
FOC96_17410	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_17430	COG0456	acetyltransferase
FOC96_17435	COG2207	Transcriptional regulator
FOC96_17460	COG1136	(ABC) transporter
FOC96_17460	COG0577	efflux transmembrane transporter activity
FOC96_17480	COG1725	Transcriptional regulator
FOC96_17515	COG1846	Transcriptional regulator
FOC96_17520	COG0778	Nitroreductase
FOC96_17550	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FOC96_17560	COG0753	catalase activity
FOC96_17565	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC96_17575	COG0463	Glycosyl transferase, family 2
FOC96_17590	COG0463	Glycosyl transferase, family 2
FOC96_17615	COG0714	Associated with various cellular activities
FOC96_17635	COG0346	lactoylglutathione lyase activity
FOC96_17640	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_17650	COG3279	Response regulator of the LytR AlgR family
FOC96_17660	COG4377	Putative membrane peptidase family (DUF2324)
FOC96_17675	COG3655	Transcriptional regulator
FOC96_17685	COG1785	Belongs to the alkaline phosphatase family
FOC96_17690	COG3239	Fatty acid desaturase
FOC96_17695	COG1690	Belongs to the RtcB family
FOC96_17700	COG0833	amino acid
FOC96_17705	COG1414	Transcriptional regulator
FOC96_17710	COG4187	Peptidase family M20/M25/M40
FOC96_17715	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC96_17730	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC96_17750	COG2329	Antibiotic biosynthesis monooxygenase
FOC96_17785	COG1070	Carbohydrate kinase
FOC96_17790	COG2390	Transcriptional regulator
FOC96_17800	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC96_17805	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC96_17825	COG3290	protein histidine kinase activity
FOC96_17825	COG3829	transcription factor binding
FOC96_17835	COG1024	Enoyl-CoA hydratase
FOC96_17840	COG2610	gluconate transmembrane transporter activity
FOC96_17850	COG1388	LysM domain
FOC96_17850	COG3584	3D domain protein
FOC96_17890	COG1605	Chorismate mutase
FOC96_17890	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
FOC96_17900	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC96_17905	COG0287	Prephenate dehydrogenase
FOC96_17920	COG1309	transcriptional regulator
FOC96_17925	COG2409	Drug exporters of the RND superfamily
FOC96_17925	COG1033	growth of symbiont in host cell
FOC96_17935	COG0488	(ABC) transporter
FOC96_17940	COG1368	sulfuric ester hydrolase activity
FOC96_17945	COG0861	Integral membrane protein TerC family
FOC96_17985	COG2318	DinB family
FOC96_17990	COG0697	spore germination
FOC96_18015	COG2746	aminoglycoside 3-N-acetyltransferase activity
FOC96_18050	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC96_18055	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC96_18060	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC96_18070	COG0628	permease
FOC96_18120	COG1131	(ABC) transporter
FOC96_18135	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
FOC96_18140	COG5146	pantothenate kinase activity
FOC96_18145	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FOC96_18150	COG0436	Aminotransferase
FOC96_18180	COG2226	methyltransferase
FOC96_18195	COG2261	transglycosylase associated protein
FOC96_18215	COG2814	Major facilitator Superfamily
FOC96_18215	COG0477	Major facilitator Superfamily
FOC96_18220	COG4533	DNA binding
FOC96_18225	COG0789	Transcriptional regulator
FOC96_18230	COG1664	Polymer-forming cytoskeletal
FOC96_18240	COG2814	Major facilitator Superfamily
FOC96_18275	COG1307	EDD domain protein, DegV family
FOC96_18280	COG1522	sequence-specific DNA binding
FOC96_18285	COG0531	amino acid
FOC96_18290	COG1164	Oligoendopeptidase f
FOC96_18320	COG0745	RESPONSE REGULATOR receiver
FOC96_18325	COG5002	protein histidine kinase activity
FOC96_18330	COG2936	dipeptidyl-peptidase activity
FOC96_18375	COG4948	Mandelate Racemase Muconate Lactonizing
FOC96_18385	COG4166	transmembrane transport
FOC96_18390	COG0519	Catalyzes the synthesis of GMP from XMP
FOC96_18395	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
FOC96_18410	COG0586	Pfam SNARE associated Golgi protein
FOC96_18450	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC96_18455	COG3938	Belongs to the proline racemase family
FOC96_18465	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC96_18470	COG1012	belongs to the aldehyde dehydrogenase family
FOC96_18475	COG1115	amino acid carrier protein
FOC96_18480	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC96_18495	COG3397	chitin binding
FOC96_18520	COG4637	Psort location Cytoplasmic, score
FOC96_18545	COG0514	ATP-dependent DNA helicase (RecQ)
FOC96_18550	COG2105	PFAM AIG2 family protein
FOC96_18565	COG3973	AAA domain
FOC96_18615	COG0658	competence protein
FOC96_18615	COG2333	competence protein COMEC
FOC96_18620	COG2153	protein acetylation
FOC96_18625	COG2315	Protein conserved in bacteria
FOC96_18630	COG2226	methyltransferase
FOC96_18635	COG2205	protein histidine kinase activity
FOC96_18645	COG3397	chitin binding
FOC96_18650	COG2153	protein acetylation
FOC96_18655	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
FOC96_18680	COG4175	Glycine betaine
FOC96_18680	COG0517	IMP dehydrogenase activity
FOC96_18685	COG4176	ABC-type proline glycine betaine transport system permease component
FOC96_18710	COG0494	nUDIX hydrolase
FOC96_18720	COG0572	uridine kinase
FOC96_18725	COG0456	acetyltransferase
FOC96_18725	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC96_18730	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_18740	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC96_18745	COG0022	dehydrogenase e1 component
FOC96_18750	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC96_18755	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC96_18770	COG1959	2 iron, 2 sulfur cluster binding
FOC96_18790	COG1349	DNA-binding transcription factor activity
FOC96_18795	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_18810	COG3284	Transcriptional regulator
FOC96_18845	COG1309	transcriptional regulator
FOC96_18880	COG2959	enzyme of heme biosynthesis
FOC96_18895	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_18930	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_18935	COG0697	spore germination
FOC96_18945	COG0201	protein transport
FOC96_18950	COG0346	lactoylglutathione lyase activity
FOC96_18970	COG3227	Zinc metalloprotease (Elastase)
FOC96_18975	COG1523	belongs to the glycosyl hydrolase 13 family
FOC96_18995	COG1011	Hydrolase
FOC96_19020	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC96_19055	COG0322	excinuclease ABC activity
FOC96_19070	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FOC96_19095	COG4667	esterase of the alpha-beta hydrolase superfamily
FOC96_19115	COG3878	Protein conserved in bacteria
FOC96_19125	COG0406	alpha-ribazole phosphatase activity
FOC96_19150	COG1051	belongs to the nudix hydrolase family
FOC96_19155	COG0592	DNA-directed DNA polymerase activity
FOC96_19160	COG2816	NAD+ diphosphatase activity
FOC96_19165	COG2223	nitrite transmembrane transporter activity
FOC96_19200	COG0697	spore germination
FOC96_19205	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_19225	COG0584	glycerophosphoryl diester phosphodiesterase
FOC96_19240	COG2814	Major facilitator Superfamily
FOC96_19250	COG0456	acetyltransferase
FOC96_19255	COG0693	protein deglycase activity
FOC96_19295	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC96_19305	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_19320	COG0671	phosphoesterase, PA-phosphatase related
FOC96_19325	COG0604	alcohol dehydrogenase
FOC96_19330	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC96_19340	COG2205	protein histidine kinase activity
FOC96_19365	COG1794	racemase activity, acting on amino acids and derivatives
FOC96_19370	COG1819	glycosyl
FOC96_19380	COG5002	protein histidine kinase activity
FOC96_19385	COG0561	phosphatase activity
FOC96_19420	COG2124	cytochrome p450
FOC96_19495	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FOC96_19505	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_19510	COG0460	homoserine dehydrogenase
FOC96_19530	COG0577	efflux transmembrane transporter activity
FOC96_19535	COG1136	(ABC) transporter
FOC96_19560	COG2205	protein histidine kinase activity
FOC96_19565	COG0745	RESPONSE REGULATOR receiver
FOC96_19575	COG3773	Cell wall hydrolase
FOC96_19580	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
FOC96_19590	COG3386	PFAM SMP-30 Gluconolaconase
FOC96_19635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_19655	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC96_19670	COG2226	methyltransferase
FOC96_19705	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FOC96_19705	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FOC96_19725	COG3227	Zinc metalloprotease (Elastase)
FOC96_19745	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FOC96_19770	COG1686	Belongs to the peptidase S11 family
FOC96_19775	COG2318	DinB family
FOC96_19785	COG0572	uridine kinase
FOC96_19800	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC96_19805	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FOC96_19810	COG1024	Enoyl-CoA hydratase
FOC96_19815	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FOC96_19820	COG0511	ligase activity, forming carbon-carbon bonds
FOC96_19825	COG0439	Biotin carboxylase
FOC96_19830	COG1960	acyl-CoA dehydrogenase activity
FOC96_19860	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC96_19885	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_19890	COG5001	Diguanylate cyclase
FOC96_19890	COG3300	MHYT domain
FOC96_19900	COG1309	transcriptional regulator
FOC96_19920	COG1876	peptidase activity
FOC96_19935	COG1476	TRANSCRIPTIONal
FOC96_19940	COG0457	Tetratricopeptide repeat
FOC96_19950	COG0737	Belongs to the 5'-nucleotidase family
FOC96_19975	COG3718	enzyme involved in inositol metabolism
FOC96_20005	COG0673	inositol 2-dehydrogenase activity
FOC96_20010	COG2814	Major facilitator Superfamily
FOC96_20015	COG1609	Transcriptional regulator
FOC96_20025	COG2367	Beta-lactamase
FOC96_20035	COG0768	penicillin binding
FOC96_20045	COG1595	DNA-templated transcription, initiation
FOC96_20050	COG0768	penicillin binding
FOC96_20065	COG0110	maltose O-acetyltransferase activity
FOC96_20075	COG2195	Cleaves the N-terminal amino acid of tripeptides
FOC96_20110	COG1846	Transcriptional regulator
FOC96_20205	COG0500	methyltransferase
FOC96_20205	COG3615	Tellurite resistance protein tehB
FOC96_20210	COG1136	(ABC) transporter
FOC96_20210	COG0577	efflux transmembrane transporter activity
FOC96_20225	COG1309	transcriptional regulator
FOC96_20255	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_20290	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FOC96_20300	COG2971	BadF BadG BcrA BcrD
FOC96_20325	COG1649	PFAM Uncharacterised BCR, COG1649
FOC96_20350	COG1595	DNA-templated transcription, initiation
FOC96_20355	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
FOC96_20365	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FOC96_20395	COG1396	sequence-specific DNA binding
FOC96_20400	COG1280	lysine exporter protein (LysE YggA)
FOC96_20415	COG1132	(ABC) transporter
FOC96_20420	COG1132	(ABC) transporter
FOC96_20435	COG2258	MOSC domain
FOC96_20440	COG0583	DNA-binding transcription factor activity
FOC96_20455	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FOC96_20460	COG0583	DNA-binding transcription factor activity
FOC96_20470	COG0010	Belongs to the arginase family
FOC96_20485	COG1278	Cold shock
FOC96_20495	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_20500	COG2226	methyltransferase
FOC96_20540	COG1247	-acetyltransferase
FOC96_20575	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_20620	COG2226	methyltransferase
FOC96_20640	COG2814	Major facilitator Superfamily
FOC96_20645	COG0596	Alpha beta hydrolase
FOC96_20660	COG1136	(ABC) transporter
FOC96_20670	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FOC96_20675	COG1187	pseudouridine synthase activity
FOC96_20680	COG2329	Antibiotic biosynthesis monooxygenase
FOC96_20695	COG1115	amino acid carrier protein
FOC96_20705	COG2318	DinB family
FOC96_20715	COG0776	regulation of translation
FOC96_20730	COG2814	Major facilitator Superfamily
FOC96_20735	COG3251	PFAM MbtH domain protein
FOC96_20740	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FOC96_20745	COG3433	isochorismatase activity
FOC96_20745	COG1535	isochorismatase
FOC96_20750	COG1021	2,3-dihydroxybenzoate-AMP ligase
FOC96_20755	COG1169	isochorismate synthase
FOC96_20760	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_20765	COG2223	nitrite transmembrane transporter activity
FOC96_20790	COG0420	3'-5' exonuclease activity
FOC96_20805	COG1024	Enoyl-CoA hydratase
FOC96_20810	COG1280	lysine exporter protein (LysE YggA)
FOC96_20820	COG2084	Dehydrogenase
FOC96_20825	COG1960	acyl-CoA dehydrogenase activity
FOC96_20830	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
FOC96_20835	COG2079	MmgE PrpD family protein
FOC96_20840	COG0372	Belongs to the citrate synthase family
FOC96_20845	COG4841	protein insertion into membrane
FOC96_20850	COG2814	Major facilitator Superfamily
FOC96_20860	COG4499	WXG100 protein secretion system (Wss), protein YukC
FOC96_20860	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC96_20880	COG0300	oxidoreductase activity
FOC96_20910	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC96_20970	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC96_20975	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FOC96_20980	COG0671	phosphoesterase, PA-phosphatase related
FOC96_20985	COG4326	sporulation control protein
FOC96_20990	COG0515	serine threonine protein kinase
FOC96_20990	COG3064	Membrane
FOC96_20990	COG4991	sh3 domain protein
FOC96_21025	COG1509	lysine 2,3-aminomutase activity
FOC96_21030	COG3829	transcription factor binding
FOC96_21035	COG0456	acetyltransferase
FOC96_21040	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC96_21045	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC96_21050	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FOC96_21055	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC96_21070	COG5506	Protein of unknown function (DUF1694)
FOC96_21075	COG1012	belongs to the aldehyde dehydrogenase family
FOC96_21080	COG1253	flavin adenine dinucleotide binding
FOC96_21115	COG1174	glycine betaine transport
FOC96_21120	COG0517	IMP dehydrogenase activity
FOC96_21120	COG1125	glycine betaine transport
FOC96_21175	COG1064	alcohol dehydrogenase
FOC96_21185	COG2197	response regulator
FOC96_21190	COG4585	Histidine kinase
FOC96_21190	COG2203	Gaf domain
FOC96_21195	COG0668	transmembrane transport
FOC96_21205	COG1051	belongs to the nudix hydrolase family
FOC96_21210	COG1335	isochorismatase
FOC96_21230	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC96_21235	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_21255	COG0367	asparagine synthase
FOC96_21260	COG0071	Belongs to the small heat shock protein (HSP20) family
FOC96_21265	COG1999	signal sequence binding
FOC96_21270	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
FOC96_21275	COG1307	EDD domain protein, DegV family
FOC96_21285	COG0805	protein transport
FOC96_21295	COG1272	protein, Hemolysin III
FOC96_21300	COG0204	Acyl-transferase
FOC96_21310	COG0768	penicillin binding
FOC96_21325	COG3250	beta-galactosidase activity
FOC96_21330	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC96_21350	COG0546	phosphoglycolate phosphatase activity
FOC96_21360	COG4473	ABC transporter
FOC96_21365	COG1131	(ABC) transporter
FOC96_21375	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FOC96_21380	COG0456	acetyltransferase
FOC96_21390	COG1794	racemase activity, acting on amino acids and derivatives
FOC96_21395	COG1454	alcohol dehydrogenase
FOC96_21400	COG2610	gluconate transmembrane transporter activity
FOC96_21425	COG0733	neurotransmitter:sodium symporter activity
FOC96_21440	COG5002	protein histidine kinase activity
FOC96_21440	COG3850	Histidine kinase
FOC96_21445	COG0745	RESPONSE REGULATOR receiver
FOC96_21450	COG0471	metal ion transport
FOC96_21455	COG1929	Belongs to the glycerate kinase type-1 family
FOC96_21575	COG1674	ftsk spoiiie
FOC96_21595	COG0017	Asparaginyl-tRNA synthetase
FOC96_21635	COG0018	arginyl-trna synthetase
FOC96_21640	COG2521	methyltransferase
FOC96_21640	COG2136	Putative SAM-dependent methyltransferase
FOC96_21655	COG1413	lyase activity
FOC96_21670	COG0629	single-stranded DNA binding
FOC96_21685	COG0488	(ABC) transporter
FOC96_21690	COG1418	mRNA catabolic process
FOC96_21750	COG2359	stage V sporulation protein S
FOC96_21785	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
FOC96_21790	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FOC96_21795	COG2146	nitrite reductase [NAD(P)H] activity
FOC96_21800	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FOC96_21800	COG1587	Uroporphyrinogen-III synthase
FOC96_21810	COG1648	precorrin-2 dehydrogenase activity
FOC96_21820	COG2223	nitrite transmembrane transporter activity
FOC96_21830	COG0314	molybdopterin synthase activity
FOC96_21835	COG0303	'Molybdopterin
FOC96_21840	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC96_21845	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FOC96_21850	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FOC96_21855	COG2181	nitrate reductase activity
FOC96_21860	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
FOC96_21865	COG1140	nitrate reductase beta subunit
FOC96_21870	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
FOC96_21885	COG0714	Associated with various cellular activities
FOC96_21890	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
FOC96_21895	COG1305	Transglutaminase-like
FOC96_21900	COG0386	Belongs to the glutathione peroxidase family
FOC96_21910	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC96_21910	COG0426	domain, Protein
FOC96_21925	COG1595	DNA-templated transcription, initiation
FOC96_21940	COG0346	lactoylglutathione lyase activity
FOC96_21965	COG2226	methyltransferase
FOC96_21990	COG3874	Sporulation protein YtfJ
FOC96_22070	COG0456	acetyltransferase
FOC96_22100	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_22105	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_22110	COG1819	glycosyl
FOC96_22125	COG4106	trans-aconitate 2-methyltransferase activity
FOC96_22130	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FOC96_22140	COG0561	phosphatase activity
FOC96_22150	COG1942	4-Oxalocrotonate Tautomerase
FOC96_22170	COG3971	2-oxopent-4-enoate hydratase activity
FOC96_22180	COG0251	oxidation-reduction process
FOC96_22195	COG0196	riboflavin kinase activity
FOC96_22205	COG2368	4-hydroxyphenylacetate
FOC96_22220	COG2211	Major facilitator Superfamily
FOC96_22225	COG0154	amidase activity
FOC96_22235	COG1876	peptidase activity
FOC96_22245	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC96_22265	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC96_22270	COG1114	Component of the transport system for branched-chain amino acids
FOC96_22285	COG1253	flavin adenine dinucleotide binding
FOC96_22290	COG2839	Protein conserved in bacteria
FOC96_22295	COG0702	epimerase
FOC96_22310	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC96_22320	COG1607	acyl-coa hydrolase
FOC96_22325	COG3689	TIGRFAM TIGR03943 family protein
FOC96_22330	COG0701	Predicted permease
FOC96_22340	COG2244	polysaccharide biosynthetic process
FOC96_22345	COG0586	Pfam SNARE associated Golgi protein
FOC96_22350	COG1051	belongs to the nudix hydrolase family
FOC96_22355	COG5337	Spore coat protein CotH
FOC96_22365	COG0406	alpha-ribazole phosphatase activity
FOC96_22380	COG4166	transmembrane transport
FOC96_22390	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FOC96_22400	COG0702	epimerase
FOC96_22410	COG0803	Belongs to the bacterial solute-binding protein 9 family
FOC96_22410	COG3443	Belongs to the bacterial solute-binding protein 9 family
FOC96_22430	COG0456	acetyltransferase
FOC96_22435	COG0523	cobalamin synthesis protein
FOC96_22440	COG4989	oxidoreductase activity
FOC96_22450	COG1231	oxidoreductase activity
FOC96_22460	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC96_22475	COG0783	Belongs to the Dps family
FOC96_22480	COG3949	Membrane
FOC96_22495	COG0840	transmembrane signaling receptor activity
FOC96_22520	COG2814	Major facilitator Superfamily
FOC96_22525	COG0667	Aldo Keto reductase
FOC96_22530	COG0640	Transcriptional regulator
FOC96_22535	COG1404	Belongs to the peptidase S8 family
FOC96_22540	COG2002	toxin-antitoxin pair type II binding
FOC96_22545	COG0577	efflux transmembrane transporter activity
FOC96_22580	COG1752	Esterase of the alpha-beta hydrolase superfamily
FOC96_22590	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_22595	COG1279	arginine transmembrane transporter activity
FOC96_22600	COG2814	Major facilitator Superfamily
FOC96_22610	COG1082	Xylose isomerase domain protein TIM barrel
FOC96_22625	COG0318	PFAM AMP-dependent synthetase and ligase
FOC96_22630	COG4264	IucA IucC family
FOC96_22640	COG1247	-acetyltransferase
FOC96_22645	COG1285	pathogenesis
FOC96_22660	COG5002	protein histidine kinase activity
FOC96_22665	COG0745	RESPONSE REGULATOR receiver
FOC96_22675	COG1316	TRANSCRIPTIONal
FOC96_22700	COG0460	homoserine dehydrogenase
FOC96_22730	COG4122	O-methyltransferase activity
FOC96_22735	COG0300	oxidoreductase activity
FOC96_22745	COG2205	protein histidine kinase activity
FOC96_22750	COG0745	RESPONSE REGULATOR receiver
FOC96_22755	COG1132	(ABC) transporter
FOC96_22765	COG0791	NLP P60 protein
FOC96_22765	COG1388	LysM domain
FOC96_22780	COG1686	Belongs to the peptidase S11 family
FOC96_22785	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC96_22800	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FOC96_22805	COG4988	ABC transporter
FOC96_22810	COG1294	oxidase, subunit
FOC96_22815	COG1271	oxidase subunit
FOC96_22835	COG1942	4-Oxalocrotonate Tautomerase
FOC96_22845	COG0583	DNA-binding transcription factor activity
FOC96_22865	COG0411	ABC transporter
FOC96_22875	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC96_22880	COG2030	dehydratase
FOC96_22885	COG0318	PFAM AMP-dependent synthetase and ligase
FOC96_22900	COG0523	cobalamin synthesis protein
FOC96_22905	COG1231	oxidoreductase activity
FOC96_22915	COG0628	permease
FOC96_22925	COG0778	Nitroreductase
FOC96_22930	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
FOC96_22935	COG1959	2 iron, 2 sulfur cluster binding
FOC96_22940	COG0583	DNA-binding transcription factor activity
FOC96_22945	COG0697	spore germination
FOC96_22955	COG4549	nuclear export factor GLE1
FOC96_22960	COG1276	copper resistance
FOC96_22960	COG2372	response to copper ion
FOC96_22970	COG1114	Component of the transport system for branched-chain amino acids
FOC96_23005	COG2132	Multicopper oxidase
FOC96_23010	COG0006	proline dipeptidase activity
FOC96_23030	COG4846	Membrane protein involved in cytochrome C biogenesis
FOC96_23040	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
FOC96_23045	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC96_23055	COG2390	Transcriptional regulator
FOC96_23060	COG2205	protein histidine kinase activity
FOC96_23065	COG0745	RESPONSE REGULATOR receiver
FOC96_23110	COG0531	amino acid
FOC96_23115	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FOC96_23130	COG1914	H( )-stimulated, divalent metal cation uptake system
FOC96_23150	COG0745	RESPONSE REGULATOR receiver
FOC96_23155	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC96_23185	COG4166	transmembrane transport
FOC96_23220	COG0427	acetyl-CoA hydrolase
FOC96_23225	COG3279	Response regulator of the LytR AlgR family
FOC96_23245	COG3384	dioxygenase
FOC96_23250	COG2814	Major facilitator Superfamily
FOC96_23275	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FOC96_23285	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
FOC96_23295	COG0028	Belongs to the TPP enzyme family
FOC96_23300	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC96_23310	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC96_23325	COG2084	Dehydrogenase
FOC96_23340	COG2323	membrane
FOC96_23345	COG5566	PFAM Mor transcription activator
FOC96_23355	COG0733	neurotransmitter:sodium symporter activity
FOC96_23360	COG2244	polysaccharide biosynthetic process
FOC96_23375	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FOC96_23380	COG2223	nitrite transmembrane transporter activity
FOC96_23385	COG4166	transmembrane transport
FOC96_23390	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FOC96_23400	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC96_23405	COG0477	Major facilitator Superfamily
FOC96_23415	COG1966	Carbon starvation protein
FOC96_23440	COG1051	belongs to the nudix hydrolase family
FOC96_23465	COG3620	sequence-specific DNA binding
FOC96_23485	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FOC96_23490	COG0784	Response regulator, receiver
FOC96_23495	COG4191	Histidine kinase
FOC96_23500	COG0281	malic enzyme
FOC96_23505	COG1027	Aspartate ammonia-lyase
FOC96_23515	COG0528	UMP kinase activity
FOC96_23520	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC96_23535	COG1131	(ABC) transporter
FOC96_23570	COG2733	membrane
FOC96_23605	COG0785	Cytochrome C biogenesis protein
FOC96_23625	COG3340	Belongs to the peptidase S51 family
FOC96_23630	COG0534	Mate efflux family protein
FOC96_23650	COG0114	fumarate hydratase activity
FOC96_23655	COG1757	Na H antiporter
FOC96_23670	COG0701	Predicted permease
FOC96_23675	COG0523	cobalamin synthesis protein
FOC96_23680	COG0697	spore germination
FOC96_23685	COG1802	Transcriptional regulator
FOC96_23715	COG0367	asparagine synthase
FOC96_23725	COG1846	Transcriptional regulator
FOC96_23745	COG0406	alpha-ribazole phosphatase activity
FOC96_23755	COG1686	Belongs to the peptidase S11 family
FOC96_23785	COG1234	tRNA 3'-trailer cleavage
FOC96_23795	COG0725	ABC transporter, periplasmic molybdate-binding protein
FOC96_23800	COG3842	ATPase activity
FOC96_23805	COG0583	DNA-binding transcription factor activity
FOC96_23830	COG2329	Antibiotic biosynthesis monooxygenase
FOC96_23865	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FOC96_23870	COG4786	Flagellar basal body rod
FOC96_23875	COG1419	protein localization to endoplasmic reticulum
FOC96_23880	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FOC96_23885	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FOC96_23895	COG1987	bacterial-type flagellum assembly
FOC96_23900	COG1338	Plays a role in the flagellum-specific transport system
FOC96_23910	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC96_23910	COG1776	CheC inhibitor of MCP methylation
FOC96_23915	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC96_23925	COG0741	lytic transglycosylase activity
FOC96_23935	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FOC96_23945	COG0835	chemotaxis
FOC96_23945	COG0784	Response regulator, receiver
FOC96_23980	COG1157	protein secretion by the type III secretion system
FOC96_23990	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC96_23995	COG1766	The M ring may be actively involved in energy transduction
FOC96_24005	COG1558	bacterial-type flagellum-dependent cell motility
FOC96_24010	COG1815	bacterial-type flagellum-dependent cell motility
FOC96_24025	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
FOC96_24030	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FOC96_24035	COG1256	bacterial-type flagellum assembly
FOC96_24055	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FOC96_24070	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC96_24070	COG1776	CheC inhibitor of MCP methylation
FOC96_24075	COG0643	Histidine kinase
FOC96_24075	COG2198	Histidine kinase
FOC96_24080	COG2201	protein-glutamate methylesterase activity
FOC96_24085	COG1360	Flagellar Motor Protein
FOC96_24090	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FOC96_24100	COG1923	regulation of RNA biosynthetic process
FOC96_24155	COG1434	Gram-negative-bacterium-type cell wall biogenesis
FOC96_24160	COG2323	membrane
FOC96_24170	COG0789	Transcriptional regulator
FOC96_24170	COG4978	Transcriptional regulator
FOC96_24175	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FOC96_24180	COG0475	glutathione-regulated potassium exporter activity
FOC96_24210	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC96_24215	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC96_24220	COG3162	membrane
FOC96_24235	COG1280	lysine exporter protein (LysE YggA)
FOC96_24240	COG3403	YqcI/YcgG family
FOC96_24275	COG0328	RNA-DNA hybrid ribonuclease activity
FOC96_24295	COG0454	-acetyltransferase
FOC96_24310	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC96_24325	COG0754	glutathionylspermidine amidase activity
FOC96_24365	COG0456	acetyltransferase
FOC96_24375	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FOC96_24380	COG2311	Membrane
FOC96_24385	COG2233	PERMEase
FOC96_24395	COG0024	Methionine aminopeptidase
FOC96_24400	COG3173	Aminoglycoside phosphotransferase
FOC96_24410	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
FOC96_24415	COG1199	ATP-dependent helicase activity
FOC96_24425	COG0116	Belongs to the methyltransferase superfamily
FOC96_24485	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC96_24485	COG4499	WXG100 protein secretion system (Wss), protein YukC
FOC96_24495	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FOC96_24500	COG3935	DnaD domain protein
FOC96_24520	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FOC96_24520	COG1199	ATP-dependent helicase activity
FOC96_24555	COG0438	transferase activity, transferring glycosyl groups
FOC96_24560	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FOC96_24575	COG1694	Mazg nucleotide pyrophosphohydrolase
FOC96_24580	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_24590	COG2738	Putative neutral zinc metallopeptidase
FOC96_24605	COG4347	Protein of unknown function (DUF1405)
FOC96_24615	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FOC96_24635	COG0457	Tetratricopeptide repeat
FOC96_24640	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC96_24660	COG0142	geranyltranstransferase activity
FOC96_24670	COG0142	geranyltranstransferase activity
FOC96_24685	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FOC96_24760	COG0492	ferredoxin-NADP+ reductase activity
FOC96_24780	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FOC96_24785	COG4862	establishment of competence for transformation
FOC96_24795	COG1408	metallophosphoesterase
FOC96_24805	COG1266	CAAX protease self-immunity
FOC96_24810	COG0514	ATP-dependent DNA helicase (RecQ)
FOC96_24820	COG1141	Ferredoxin
FOC96_24825	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
FOC96_24835	COG4942	peptidase
FOC96_24840	COG2096	Adenosyltransferase
FOC96_24845	COG5002	protein histidine kinase activity
FOC96_24850	COG0745	RESPONSE REGULATOR receiver
FOC96_24855	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FOC96_24860	COG1333	cytochrome c biogenesis protein
FOC96_24870	COG1187	pseudouridine synthase activity
FOC96_24875	COG0700	Nucleoside recognition
FOC96_24880	COG2715	membrane protein required for spore maturation
FOC96_24885	COG1686	Belongs to the peptidase S11 family
FOC96_24890	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC96_24905	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
FOC96_24905	COG0392	lysyltransferase activity
FOC96_24920	COG5002	protein histidine kinase activity
FOC96_24925	COG0582	viral genome integration into host DNA
FOC96_24935	COG1801	Protein of unknown function DUF72
FOC96_24940	COG3852	Histidine kinase
FOC96_24955	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC96_24960	COG1392	Phosphate transport regulator
FOC96_24965	COG0306	phosphate transporter
FOC96_24970	COG0730	response to heat
FOC96_25010	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FOC96_25020	COG1114	Component of the transport system for branched-chain amino acids
FOC96_25030	COG2197	response regulator
FOC96_25035	COG4585	Histidine kinase
FOC96_25040	COG4758	membrane
FOC96_25055	COG1757	Na H antiporter
FOC96_25075	COG0733	neurotransmitter:sodium symporter activity
FOC96_25080	COG1648	precorrin-2 dehydrogenase activity
FOC96_25100	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FOC96_25105	COG0529	Catalyzes the synthesis of activated sulfate
FOC96_25125	COG0019	diaminopimelate decarboxylase activity
FOC96_25135	COG1368	sulfuric ester hydrolase activity
FOC96_25140	COG1183	phosphatidylcholine synthase activity
FOC96_25145	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC96_25155	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FOC96_25230	COG0440	acetolactate synthase activity
FOC96_25235	COG0028	Belongs to the TPP enzyme family
FOC96_25240	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC96_25265	COG3874	Sporulation protein YtfJ
FOC96_25270	COG4709	membrane
FOC96_25275	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC96_25280	COG1301	dicarboxylic acid transport
FOC96_25290	COG1846	Transcriptional regulator
FOC96_25305	COG1968	undecaprenyl-diphosphatase activity
FOC96_25310	COG0534	Mate efflux family protein
FOC96_25330	COG3173	Aminoglycoside phosphotransferase
FOC96_25345	COG0716	FMN binding
FOC96_25370	COG1696	Membrane protein involved in D-alanine export
FOC96_25380	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
FOC96_25385	COG2070	2-Nitropropane dioxygenase
FOC96_25390	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC96_25400	COG1335	isochorismatase
FOC96_25410	COG1522	sequence-specific DNA binding
FOC96_25425	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FOC96_25430	COG1131	(ABC) transporter
FOC96_25440	COG1131	(ABC) transporter
FOC96_25445	COG1725	Transcriptional regulator
FOC96_25450	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FOC96_25460	COG1403	HNH endonuclease
FOC96_25465	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FOC96_25470	COG1780	Probably involved in ribonucleotide reductase function
FOC96_25500	COG4873	Protein conserved in bacteria
FOC96_25515	COG0720	synthase
FOC96_25525	COG5002	protein histidine kinase activity
FOC96_25530	COG2318	DinB family
FOC96_25540	COG1846	Transcriptional regulator
FOC96_25545	COG3852	Histidine kinase
FOC96_25555	COG2861	carbohydrate metabolic process
FOC96_25565	COG0235	Class ii aldolase
FOC96_25575	COG1349	DNA-binding transcription factor activity
FOC96_25600	COG3842	ATPase activity
FOC96_25605	COG1840	ABC-type Fe3 transport system, periplasmic component
FOC96_25620	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC96_25630	COG3243	poly(R)-hydroxyalkanoic acid synthase
FOC96_25635	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_25655	COG2030	dehydratase
FOC96_25665	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC96_25670	COG0861	Integral membrane protein TerC family
FOC96_25675	COG2116	formate transmembrane transporter activity
FOC96_25685	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
FOC96_25705	COG2186	Transcriptional regulator
FOC96_25710	COG5002	protein histidine kinase activity
FOC96_25715	COG0745	RESPONSE REGULATOR receiver
FOC96_25725	COG3835	regulator
FOC96_25730	COG0277	FAD linked oxidase domain protein
FOC96_25735	COG0247	lactate metabolic process
FOC96_25740	COG2340	Cysteine-rich secretory protein family
FOC96_25750	COG0564	pseudouridine synthase activity
FOC96_25760	COG2409	Drug exporters of the RND superfamily
FOC96_25770	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FOC96_25775	COG1177	transmembrane transport
FOC96_25780	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC96_25790	COG1012	belongs to the aldehyde dehydrogenase family
FOC96_25825	COG0681	Belongs to the peptidase S26 family
FOC96_25830	COG1686	Belongs to the peptidase S11 family
FOC96_25840	COG2226	methyltransferase
FOC96_25855	COG1668	transmembrane transport
FOC96_25860	COG4152	abc transporter atp-binding protein
FOC96_25875	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC96_25935	COG1476	TRANSCRIPTIONal
FOC96_25945	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC96_26000	COG5634	Uncharacterized conserved protein (DUF2278)
FOC96_26005	COG1620	l-lactate permease
FOC96_26040	COG0512	Glutamine amidotransferase of anthranilate synthase
FOC96_26040	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FOC96_26050	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC96_26055	COG5492	domain, Protein
FOC96_26070	COG2382	esterase
FOC96_26080	COG2153	protein acetylation
FOC96_26135	COG1091	dTDP-4-dehydrorhamnose reductase activity
FOC96_26150	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
FOC96_26170	COG0463	Glycosyl transferase, family 2
FOC96_26170	COG0457	Tetratricopeptide repeat
FOC96_26190	COG1216	Glycosyl transferase, family 2
FOC96_26195	COG0772	Belongs to the SEDS family
FOC96_26210	COG0564	pseudouridine synthase activity
FOC96_26220	COG2357	RelA SpoT domain protein
FOC96_26230	COG4116	CYTH
FOC96_26235	COG2346	COG2346, Truncated hemoglobins
FOC96_26250	COG1164	Oligoendopeptidase f
FOC96_26260	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC96_26265	COG4862	establishment of competence for transformation
FOC96_26270	COG0861	Integral membrane protein TerC family
FOC96_26285	COG4166	transmembrane transport
FOC96_26290	COG0534	Mate efflux family protein
FOC96_26295	COG4608	Belongs to the ABC transporter superfamily
FOC96_26300	COG0444	Belongs to the ABC transporter superfamily
FOC96_26305	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC96_26310	COG0601	transmembrane transport
FOC96_26315	COG4166	transmembrane transport
FOC96_26325	COG0180	Tryptophanyl-tRNA synthetase
FOC96_26335	COG5504	Zn-dependent protease
FOC96_26340	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FOC96_26345	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC96_26360	COG2267	carboxylic ester hydrolase activity
FOC96_26370	COG0542	response to heat
FOC96_26380	COG0561	phosphatase activity
FOC96_26395	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC96_26405	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC96_26415	COG2996	Protein conserved in bacteria
FOC96_26435	COG0004	ammonium transporteR
FOC96_26440	COG0753	catalase activity
FOC96_26450	COG0367	asparagine synthase
FOC96_26475	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC96_26535	COG0398	Pfam SNARE associated Golgi protein
FOC96_26540	COG4903	ComK protein
FOC96_26565	COG2224	Isocitrate lyase
FOC96_26570	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
FOC96_26590	COG0697	spore germination
FOC96_26595	COG0501	Belongs to the peptidase M48B family
FOC96_26615	COG0745	RESPONSE REGULATOR receiver
FOC96_26620	COG2205	protein histidine kinase activity
FOC96_26625	COG2207	Transcriptional regulator
FOC96_26625	COG3708	Transcriptional regulator
FOC96_26630	COG1595	DNA-templated transcription, initiation
FOC96_26640	COG1078	dGTPase activity
FOC96_26650	COG1408	metallophosphoesterase
FOC96_26655	COG1073	alpha beta
FOC96_26660	COG1309	transcriptional regulator
FOC96_26710	COG0318	PFAM AMP-dependent synthetase and ligase
FOC96_26720	COG0095	Lipoate-protein ligase
FOC96_26725	COG1234	tRNA 3'-trailer cleavage
FOC96_26735	COG1609	Transcriptional regulator
FOC96_26755	COG1511	domain protein
FOC96_26760	COG1309	transcriptional regulator
FOC96_26815	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC96_26820	COG2329	Antibiotic biosynthesis monooxygenase
FOC96_26825	COG3428	Bacterial PH domain
FOC96_26830	COG3402	PFAM membrane-flanked domain
FOC96_26850	COG1309	transcriptional regulator
FOC96_26870	COG3428	Bacterial PH domain
FOC96_26875	COG3402	PFAM membrane-flanked domain
FOC96_26885	COG1309	transcriptional regulator
FOC96_26900	COG4473	ABC transporter
FOC96_26905	COG1131	(ABC) transporter
FOC96_26910	COG0537	adenosine 5'-monophosphoramidase activity
FOC96_26915	COG4980	gas vesicle protein
FOC96_26935	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC96_26940	COG3973	AAA domain
FOC96_26950	COG0477	Major facilitator Superfamily
FOC96_26955	COG0477	Major facilitator Superfamily
FOC96_27000	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FOC96_27010	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FOC96_27015	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
FOC96_27035	COG2267	carboxylic ester hydrolase activity
FOC96_27045	COG0457	Tetratricopeptide repeat
FOC96_27050	COG0346	lactoylglutathione lyase activity
FOC96_27055	COG0346	lactoylglutathione lyase activity
FOC96_27090	COG4717	serine-type aminopeptidase activity
FOC96_27095	COG0420	3'-5' exonuclease activity
FOC96_27160	COG2198	Histidine kinase
FOC96_27160	COG0784	Response regulator, receiver
FOC96_27160	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC96_27160	COG2205	protein histidine kinase activity
FOC96_27165	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FOC96_27170	COG2208	phosphoserine phosphatase activity
FOC96_27180	COG1191	sigma factor activity
FOC96_27255	COG2770	Histidine kinase
FOC96_27255	COG3437	response regulator, receiver
FOC96_27265	COG0457	Tetratricopeptide repeat
FOC96_27280	COG1959	2 iron, 2 sulfur cluster binding
FOC96_27285	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
FOC96_27290	COG2376	Dihydroxyacetone kinase
FOC96_27300	COG2376	Dihydroxyacetone kinase
FOC96_27330	COG1183	phosphatidylcholine synthase activity
FOC96_27345	COG1309	transcriptional regulator
FOC96_27350	COG3320	Male sterility
FOC96_27350	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FOC96_27410	COG0477	Major facilitator Superfamily
FOC96_27440	COG0305	Participates in initiation and elongation during chromosome replication
FOC96_27455	COG0789	Transcriptional regulator
FOC96_27455	COG4978	Transcriptional regulator
FOC96_27510	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FOC96_27565	COG3181	Tripartite tricarboxylate transporter family receptor
FOC96_27570	COG4565	transcriptional regulatory protein
FOC96_27575	COG3290	protein histidine kinase activity
FOC96_27580	COG0477	Major facilitator Superfamily
FOC96_27600	COG0556	nucleotide-excision repair
FOC96_27630	COG4608	Belongs to the ABC transporter superfamily
FOC96_27635	COG0444	Belongs to the ABC transporter superfamily
FOC96_27640	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC96_27645	COG0601	transmembrane transport
FOC96_27680	COG3938	Belongs to the proline racemase family
FOC96_27695	COG4974	Belongs to the 'phage' integrase family
FOC96_27710	COG2207	Transcriptional regulator
FOC96_27710	COG3708	Transcriptional regulator
FOC96_27730	COG1363	Peptidase, m42
FOC96_27755	COG1024	Enoyl-CoA hydratase
FOC96_27775	COG4196	transglutaminase domain protein
FOC96_27780	COG4196	transglutaminase domain protein
FOC96_27790	COG2244	polysaccharide biosynthetic process
FOC96_27795	COG0653	protein targeting
FOC96_27820	COG0659	secondary active sulfate transmembrane transporter activity
FOC96_27835	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FOC96_27840	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC96_27840	COG3409	Peptidoglycan-binding domain 1 protein
FOC96_27850	COG0561	phosphatase activity
FOC96_27860	COG3527	Alpha-acetolactate decarboxylase
FOC96_27865	COG0028	Belongs to the TPP enzyme family
FOC96_27895	COG0189	ligase activity
FOC96_27910	COG1126	abc transporter atp-binding protein
FOC96_27915	COG0765	amino acid transport
FOC96_27920	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC96_27925	COG1132	(ABC) transporter
FOC96_27930	COG1132	(ABC) transporter
FOC96_27935	COG1012	belongs to the aldehyde dehydrogenase family
FOC96_27950	COG0531	amino acid
FOC96_27960	COG0753	catalase activity
FOC96_27960	COG0693	protein deglycase activity
FOC96_27965	COG0693	protein deglycase activity
FOC96_27975	COG2211	Major facilitator Superfamily
FOC96_27980	COG4533	DNA binding
FOC96_27990	COG2814	Major facilitator Superfamily
FOC96_27995	COG1309	transcriptional regulator
FOC96_28000	COG2076	Multidrug Resistance protein
FOC96_28015	COG1522	sequence-specific DNA binding
FOC96_28035	COG2259	Doxx family
FOC96_28050	COG1263	PTS System
FOC96_28050	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC96_28060	COG1737	Transcriptional regulator
FOC96_28070	COG0475	glutathione-regulated potassium exporter activity
FOC96_28075	COG0531	amino acid
FOC96_28110	COG0586	Pfam SNARE associated Golgi protein
FOC96_28145	COG3546	catalase activity
FOC96_28150	COG1114	Component of the transport system for branched-chain amino acids
FOC96_28155	COG0577	efflux transmembrane transporter activity
FOC96_28170	COG5522	Integral membrane protein (intg_mem_TP0381)
FOC96_28180	COG1136	(ABC) transporter
FOC96_28185	COG0577	efflux transmembrane transporter activity
FOC96_28190	COG3584	3D domain protein
FOC96_28190	COG1388	LysM domain
FOC96_28210	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC96_28215	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC96_28220	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC96_28220	COG3711	transcriptional antiterminator
FOC96_28235	COG1283	sodium-dependent phosphate transmembrane transporter activity
FOC96_28240	COG0604	alcohol dehydrogenase
FOC96_28245	COG1316	TRANSCRIPTIONal
FOC96_28255	COG0730	response to heat
FOC96_28260	COG2210	Belongs to the sulfur carrier protein TusA family
FOC96_28270	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC96_28275	COG0425	Belongs to the sulfur carrier protein TusA family
FOC96_28280	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC96_28280	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC96_28285	COG0425	Belongs to the sulfur carrier protein TusA family
FOC96_28285	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC96_28290	COG1937	Protein conserved in bacteria
FOC96_28295	COG0446	pyridine nucleotide-disulphide oxidoreductase
FOC96_28300	COG2719	SpoVR family
FOC96_28305	COG0778	Nitroreductase
FOC96_28345	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC96_28355	COG1609	Transcriptional regulator
FOC96_28360	COG1263	PTS System
FOC96_28360	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC96_28365	COG1621	beta-fructofuranosidase activity
FOC96_28370	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FOC96_28385	COG1028	Short-chain dehydrogenase reductase Sdr
FOC96_28390	COG2252	PERMEase
FOC96_28400	COG1136	(ABC) transporter
FOC96_28400	COG0577	efflux transmembrane transporter activity
FOC96_28425	COG1846	Transcriptional regulator
FOC96_28430	COG2814	Major facilitator Superfamily
FOC96_28435	COG2205	protein histidine kinase activity
FOC96_28475	COG0351	phosphomethylpyrimidine kinase
FOC96_28480	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC96_28490	COG2104	thiamine diphosphate biosynthetic process
FOC96_28495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC96_28500	COG0352	thiamine-phosphate diphosphorylase activity
FOC96_28505	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC96_28510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC96_28515	COG1116	anion transmembrane transporter activity
FOC96_28520	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FOC96_28540	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
FOC96_28660	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC96_28670	COG0581	inorganic phosphate transmembrane transporter activity
FOC96_28675	COG0573	inorganic phosphate transmembrane transporter activity
FOC96_28680	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FOC96_28685	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FOC96_28685	COG1918	ferrous iron import across plasma membrane
FOC96_28690	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FOC96_28695	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FOC96_28705	COG0531	amino acid
FOC96_28710	COG0697	spore germination
FOC96_28715	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC96_28730	COG4990	cell redox homeostasis
FOC96_28735	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FOC96_28740	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FOC96_28755	COG0569	domain protein
FOC96_28755	COG0475	glutathione-regulated potassium exporter activity
FOC96_28765	COG2153	protein acetylation
FOC96_28780	COG2252	PERMEase
FOC96_28785	COG1113	amino acid transport
FOC96_28800	COG1114	Component of the transport system for branched-chain amino acids
FOC96_28805	COG3104	oligopeptide transport
FOC96_28820	COG1476	TRANSCRIPTIONal
FOC96_28825	COG3584	3D domain protein
FOC96_28825	COG1388	LysM domain
FOC96_28830	COG0840	transmembrane signaling receptor activity
FOC96_28860	COG3568	Endonuclease Exonuclease Phosphatase
FOC96_28875	COG1063	alcohol dehydrogenase
FOC96_28895	COG1879	ABC-type sugar transport system periplasmic component
FOC96_28900	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC96_28915	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FOC96_28920	COG1609	Transcriptional regulator
FOC96_28925	COG0477	Major facilitator Superfamily
FOC96_28930	COG1846	Transcriptional regulator
FOC96_28935	COG2271	Major facilitator Superfamily
FOC96_28945	COG4608	Belongs to the ABC transporter superfamily
FOC96_28950	COG0601	transmembrane transport
FOC96_28960	COG0747	negative chemotaxis
FOC96_28975	COG0659	secondary active sulfate transmembrane transporter activity
FOC96_28990	COG5002	protein histidine kinase activity
FOC96_28995	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
FOC96_29000	COG2378	regulation of single-species biofilm formation
FOC96_29010	COG1595	DNA-templated transcription, initiation
FOC96_29025	COG0833	amino acid
FOC96_29030	COG0765	amino acid transport
FOC96_29035	COG0765	amino acid transport
FOC96_29040	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC96_29045	COG1126	abc transporter atp-binding protein
FOC96_29050	COG1115	amino acid carrier protein
FOC96_29055	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC96_29070	COG1404	Belongs to the peptidase S8 family
FOC96_29075	COG2197	response regulator
FOC96_29080	COG4585	Histidine kinase
FOC96_29085	COG0697	spore germination
FOC96_29100	COG0366	Alpha amylase catalytic
FOC96_29105	COG1263	PTS System
FOC96_29105	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC96_29110	COG2188	Transcriptional regulator
FOC96_29115	COG0531	amino acid
FOC96_29130	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC96_29135	COG0714	Associated with various cellular activities
FOC96_29140	COG4548	von Willebrand factor, type A
FOC96_29150	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC96_29155	COG0156	8-amino-7-oxononanoate synthase activity
FOC96_29170	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_29175	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_29180	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_29185	COG3104	oligopeptide transport
FOC96_29200	COG1620	l-lactate permease
FOC96_29205	COG1027	Aspartate ammonia-lyase
FOC96_29210	COG1253	flavin adenine dinucleotide binding
FOC96_29215	COG0346	lactoylglutathione lyase activity
FOC96_29220	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC96_29225	COG1316	TRANSCRIPTIONal
FOC96_29230	COG2720	vancomycin resistance protein
FOC96_29250	COG3227	Zinc metalloprotease (Elastase)
FOC96_29265	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
FOC96_29270	COG2217	Heavy metal translocating P-type atpase
FOC96_29275	COG0640	Transcriptional regulator
FOC96_29280	COG0531	amino acid
FOC96_29295	COG2427	Protein of unknown function (DUF1641)
FOC96_29300	COG3383	formate dehydrogenase (NAD+) activity
FOC96_29305	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FOC96_29310	COG0454	-acetyltransferase
FOC96_29310	COG0456	acetyltransferase
FOC96_29315	COG0745	RESPONSE REGULATOR receiver
FOC96_29320	COG5002	protein histidine kinase activity
FOC96_29330	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC96_29345	COG0281	malic enzyme
FOC96_29350	COG3493	citrate carrier protein
FOC96_29355	COG4565	transcriptional regulatory protein
FOC96_29360	COG3290	protein histidine kinase activity
FOC96_29370	COG4990	cell redox homeostasis
FOC96_29380	COG5002	protein histidine kinase activity
FOC96_29385	COG0745	RESPONSE REGULATOR receiver
FOC96_29390	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FOC96_29410	COG2851	Citrate transporter
FOC96_29415	COG4565	transcriptional regulatory protein
FOC96_29420	COG3290	protein histidine kinase activity
FOC96_29430	COG2268	Band 7 protein
FOC96_29435	COG1585	Membrane protein implicated in regulation of membrane protease activity
FOC96_29445	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FOC96_29465	COG2766	serine protein kinase
FOC96_29470	COG1716	ATPase activity
FOC96_29470	COG5001	Diguanylate cyclase
FOC96_29475	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FOC96_29485	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FOC96_29500	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FOC96_29505	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FOC96_29520	COG1132	(ABC) transporter
FOC96_29655	COG0735	belongs to the Fur family
FOC96_29660	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FOC96_29680	COG4555	ABC transporter
FOC96_29690	COG0069	glutamate synthase activity
FOC96_29690	COG0070	glutamate synthase
FOC96_29690	COG0067	glutamate synthase
FOC96_29695	COG4129	membrane
FOC96_29700	COG1132	(ABC) transporter
FOC96_29725	COG1194	a g-specific adenine glycosylase
FOC96_29730	COG1988	membrane-bound metal-dependent
FOC96_29760	COG1090	epimerase
FOC96_29765	COG1228	amidohydrolase
FOC96_29785	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FOC96_29805	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FOC96_29805	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC96_29815	COG0463	Glycosyl transferase, family 2
FOC96_29830	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC96_29835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC96_29835	COG1263	PTS System
FOC96_29865	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC96_29870	COG0833	amino acid
FOC96_29880	COG3829	transcription factor binding
FOC96_29900	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FOC96_29920	COG0535	radical SAM domain protein
FOC96_29930	COG0387	Pfam Sodium calcium exchanger
FOC96_29935	COG3871	stress protein (general stress protein 26)
FOC96_29950	COG0586	Pfam SNARE associated Golgi protein
FOC96_29960	COG0681	Belongs to the peptidase S26 family
FOC96_29970	COG0697	spore germination
FOC96_29975	COG2217	Heavy metal translocating P-type atpase
FOC96_29980	COG1295	ribonuclease BN
FOC96_29990	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FOC96_30005	COG3853	Toxic anion resistance protein (TelA)
FOC96_30015	COG0861	Integral membrane protein TerC family
FOC96_30020	COG2310	stress, protein
FOC96_30025	COG2310	stress, protein
FOC96_30030	COG2310	stress, protein
FOC96_30060	COG2270	Major facilitator Superfamily
FOC96_30110	COG0488	(ABC) transporter
FOC96_30115	COG1116	anion transmembrane transporter activity
FOC96_30125	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC96_30140	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
FOC96_30170	COG2190	(PTS) system
FOC96_30170	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC96_30170	COG1263	PTS System
FOC96_30175	COG0366	Alpha amylase catalytic
FOC96_30180	COG0840	transmembrane signaling receptor activity
FOC96_30185	COG0840	transmembrane signaling receptor activity
FOC96_30195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC96_30200	COG0765	amino acid transport
FOC96_30210	COG0723	plastoquinol--plastocyanin reductase activity
FOC96_30210	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC96_30215	COG2814	Major facilitator Superfamily
FOC96_30220	COG3541	Predicted nucleotidyltransferase
FOC96_30240	COG5002	protein histidine kinase activity
FOC96_30270	COG0166	Belongs to the GPI family
FOC96_30285	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC96_30290	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_30295	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC96_30315	COG0450	alkyl hydroperoxide reductase
FOC96_30335	COG1473	amidohydrolase
FOC96_30365	COG4807	Protein conserved in bacteria
FOC96_30370	COG5002	protein histidine kinase activity
FOC96_30375	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FOC96_30380	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FOC96_30385	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC96_30400	COG2309	aminopeptidase activity
FOC96_30405	COG2076	Multidrug Resistance protein
FOC96_30410	COG1012	belongs to the aldehyde dehydrogenase family
FOC96_30420	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FOC96_30425	COG0546	phosphoglycolate phosphatase activity
FOC96_30430	COG1597	lipid kinase activity
FOC96_30450	COG4682	membrane
FOC96_30455	COG1846	Transcriptional regulator
FOC96_30460	COG0003	Pfam Anion-transporting ATPase
FOC96_30475	COG1464	Belongs to the NlpA lipoprotein family
FOC96_30480	COG2011	ABC-type metal ion transport system permease component
FOC96_30490	COG1335	isochorismatase
FOC96_30510	COG4851	CamS sex pheromone cAM373 precursor
FOC96_30520	COG0210	DNA helicase
FOC96_30545	COG0151	Belongs to the GarS family
FOC96_30555	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FOC96_30565	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FOC96_30580	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FOC96_30590	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FOC96_30595	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FOC96_30600	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FOC96_30625	COG0697	spore germination
FOC96_30645	COG0745	RESPONSE REGULATOR receiver
FOC96_30650	COG2205	protein histidine kinase activity
FOC96_30715	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
FOC96_30740	COG5002	protein histidine kinase activity
FOC96_30800	COG1396	sequence-specific DNA binding
FOC96_30810	COG3617	BRO family, N-terminal domain
FOC96_30840	COG1484	DNA-dependent DNA replication
FOC96_30875	COG0756	dUTP diphosphatase activity
FOC96_30940	COG0322	excinuclease ABC activity
FOC96_30945	COG5484	DNA packaging
FOC96_30965	COG5518	Phage portal protein
FOC96_30970	COG2369	cell adhesion
FOC96_30975	COG0338	D12 class N6 adenine-specific DNA methyltransferase
FOC96_30980	COG4653	Phage capsid family
FOC96_31050	COG4824	toxin secretion phage lysis holin
FOC96_31080	COG4974	Belongs to the 'phage' integrase family
FOC96_31105	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC96_31140	COG1192	Involved in chromosome partitioning
FOC96_31150	COG0457	Tetratricopeptide repeat