locus-tag class description BG03_10 PF01638 HxlR-like helix-turn-helix BG03_100 PF13302 Acetyltransferase (GNAT) domain BG03_1001 PF02742 Iron dependent repressor, metal binding and dimerisation domain BG03_1001 PF01325 Iron dependent repressor, N-terminal DNA binding domain BG03_1003 PF13419 Haloacid dehalogenase-like hydrolase BG03_1004 PF07136 Protein of unknown function (DUF1385) BG03_1005 PF11085 Conserved membrane protein YqhR BG03_1006 PF01220 Dehydroquinase class II BG03_1007 PF00557 Metallopeptidase family M24 BG03_1007 PF01321 Creatinase/Prolidase N-terminal domain BG03_1008 PF09285 Elongation factor P, C-terminal BG03_1008 PF08207 Elongation factor P (EF-P) KOW-like domain BG03_1008 PF01132 Elongation factor P (EF-P) OB domain BG03_101 PF12848 ABC transporter BG03_101 PF00005 ABC transporter BG03_1013 PF09548 Stage III sporulation protein AB (spore_III_AB) BG03_1014 PF06686 Stage III sporulation protein AC/AD protein family BG03_1015 PF06686 Stage III sporulation protein AC/AD protein family BG03_1016 PF09546 Stage III sporulation protein AE (spore_III_AE) BG03_1017 PF09581 Stage III sporulation protein AF (Spore_III_AF) BG03_1019 PF12685 SpoIIIAH-like protein BG03_102 PF07690 Major Facilitator Superfamily BG03_1021 PF00364 Biotin-requiring enzyme BG03_1022 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG03_1022 PF00289 Biotin carboxylase, N-terminal domain BG03_1022 PF02785 Biotin carboxylase C-terminal domain BG03_1023 PF03780 Asp23 family, cell envelope-related function BG03_1024 PF01029 NusB family BG03_1025 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BG03_1025 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BG03_1026 PF13742 OB-fold nucleic acid binding domain BG03_1026 PF02601 Exonuclease VII, large subunit BG03_1027 PF02609 Exonuclease VII small subunit BG03_1028 PF00348 Polyprenyl synthetase BG03_1029 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BG03_1029 PF02780 Transketolase, C-terminal domain BG03_1029 PF02779 Transketolase, pyrimidine binding domain BG03_1030 PF01728 FtsJ-like methyltransferase BG03_1030 PF01479 S4 domain BG03_1031 PF01316 Arginine repressor, DNA binding domain BG03_1031 PF02863 Arginine repressor, C-terminal domain BG03_1032 PF13476 AAA domain BG03_1033 PF17820 PDZ domain BG03_1033 PF05580 SpoIVB peptidase S55 BG03_1034 PF08769 Sporulation initiation factor Spo0A C terminal BG03_1034 PF00072 Response regulator receiver domain BG03_1038 PF14174 YycC-like protein BG03_1039 PF03009 Glycerophosphoryl diester phosphodiesterase family BG03_1041 PF00989 PAS fold BG03_1041 PF00158 Sigma-54 interaction domain BG03_1041 PF02954 Bacterial regulatory protein, Fis family BG03_1042 PF01515 Phosphate acetyl/butaryl transferase BG03_1043 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BG03_1043 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BG03_1044 PF00871 Acetokinase family BG03_1045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG03_1045 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_1046 PF00676 Dehydrogenase E1 component BG03_1047 PF02780 Transketolase, C-terminal domain BG03_1047 PF02779 Transketolase, pyrimidine binding domain BG03_1048 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG03_1048 PF00364 Biotin-requiring enzyme BG03_1048 PF02817 e3 binding domain BG03_1049 PF01098 Cell cycle protein BG03_105 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BG03_1050 PF04239 Protein of unknown function (DUF421) BG03_1051 PF09297 NADH pyrophosphatase zinc ribbon domain BG03_1051 PF00293 NUDIX domain BG03_1052 PF11208 Protein of unknown function (DUF2992) BG03_1053 PF06491 Disulphide isomerase BG03_1054 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG03_1055 PF00528 Binding-protein-dependent transport system inner membrane component BG03_1056 PF00005 ABC transporter BG03_1057 PF06081 Aromatic acid exporter family member 1 BG03_1057 PF11728 Putative aromatic acid exporter C-terminal domain BG03_1058 PF03734 L,D-transpeptidase catalytic domain BG03_106 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BG03_1060 PF13302 Acetyltransferase (GNAT) domain BG03_1061 PF01546 Peptidase family M20/M25/M40 BG03_1061 PF07687 Peptidase dimerisation domain BG03_1063 PF11798 IMS family HHH motif BG03_1063 PF11799 impB/mucB/samB family C-terminal domain BG03_1063 PF00817 impB/mucB/samB family BG03_1064 PF02308 MgtC family BG03_1065 PF00690 Cation transporter/ATPase, N-terminus BG03_1065 PF00689 Cation transporting ATPase, C-terminus BG03_1067 PF12706 Beta-lactamase superfamily domain BG03_1067 PF00753 Metallo-beta-lactamase superfamily BG03_1068 PF03315 Serine dehydratase beta chain BG03_1068 PF01842 ACT domain BG03_1069 PF03313 Serine dehydratase alpha chain BG03_1070 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG03_1070 PF03807 NADP oxidoreductase coenzyme F420-dependent BG03_1071 PF00753 Metallo-beta-lactamase superfamily BG03_1072 PF00106 short chain dehydrogenase BG03_1074 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG03_1074 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG03_1075 PF01960 ArgJ family BG03_1076 PF00696 Amino acid kinase family BG03_1077 PF00202 Aminotransferase class-III BG03_1078 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BG03_1078 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BG03_108 PF17202 Single cache domain 3 BG03_108 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_108 PF00672 HAMP domain BG03_1081 PF13404 AsnC-type helix-turn-helix domain BG03_1081 PF01037 Lrp/AsnC ligand binding domain BG03_1083 PF00149 Calcineurin-like phosphoesterase BG03_1083 PF02872 5'-nucleotidase, C-terminal domain BG03_1086 PF00202 Aminotransferase class-III BG03_1088 PF00155 Aminotransferase class I and II BG03_1089 PF12697 Alpha/beta hydrolase family BG03_1089 PF08241 Methyltransferase domain BG03_1090 PF13847 Methyltransferase domain BG03_1091 PF06968 Biotin and Thiamin Synthesis associated domain BG03_1091 PF04055 Radical SAM superfamily BG03_1093 PF00885 6,7-dimethyl-8-ribityllumazine synthase BG03_1094 PF00925 GTP cyclohydrolase II BG03_1094 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BG03_1095 PF00677 Lumazine binding domain BG03_1096 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG03_1096 PF01872 RibD C-terminal domain BG03_1098 PF10827 Protein of unknown function (DUF2552) BG03_1099 PF12146 Serine aminopeptidase, S33 BG03_11 PF01476 LysM domain BG03_11 PF00877 NlpC/P60 family BG03_110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BG03_110 PF01565 FAD binding domain BG03_1100 PF00583 Acetyltransferase (GNAT) family BG03_1101 PF00356 Bacterial regulatory proteins, lacI family BG03_1102 PF03553 Na+/H+ antiporter family BG03_1102 PF13726 Na+-H+ antiporter family BG03_1103 PF12146 Serine aminopeptidase, S33 BG03_1105 PF02872 5'-nucleotidase, C-terminal domain BG03_1105 PF00746 LPXTG cell wall anchor motif BG03_1105 PF00149 Calcineurin-like phosphoesterase BG03_1105 PF00565 Staphylococcal nuclease homologue BG03_1107 PF04229 GrpB protein BG03_1107 PF13673 Acetyltransferase (GNAT) domain BG03_1108 PF00248 Aldo/keto reductase family BG03_1109 PF00248 Aldo/keto reductase family BG03_111 PF01479 S4 domain BG03_111 PF00579 tRNA synthetases class I (W and Y) BG03_1110 PF13072 Mother cell inhibitor of FtsZ BG03_1111 PF00293 NUDIX domain BG03_1113 PF01944 Stage II sporulation protein M BG03_1114 PF01475 Ferric uptake regulator family BG03_1115 PF14004 Protein of unknown function (DUF4227) BG03_1116 PF02899 Phage integrase, N-terminal SAM-like domain BG03_1116 PF00589 Phage integrase family BG03_1117 PF13115 YtkA-like BG03_1118 PF01676 Metalloenzyme superfamily BG03_1119 PF01048 Phosphorylase superfamily BG03_112 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_1120 PF02885 Glycosyl transferase family, helical bundle domain BG03_1120 PF00591 Glycosyl transferase family, a/b domain BG03_1120 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BG03_1121 PF01544 CorA-like Mg2+ transporter protein BG03_1122 PF00860 Permease family BG03_1124 PF01047 MarR family BG03_1128 PF00005 ABC transporter BG03_1129 PF00392 Bacterial regulatory proteins, gntR family BG03_113 PF07849 Protein of unknown function (DUF1641) BG03_1130 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_1130 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_1131 PF01740 STAS domain BG03_1132 PF13581 Histidine kinase-like ATPase domain BG03_1133 PF04539 Sigma-70 region 3 BG03_1133 PF04542 Sigma-70 region 2 BG03_1133 PF04545 Sigma-70, region 4 BG03_1134 PF00209 Sodium:neurotransmitter symporter family BG03_1136 PF12164 Stage V sporulation protein AA BG03_1137 PF13782 Stage V sporulation protein AB BG03_1138 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG03_1139 PF07451 Stage V sporulation protein AD (SpoVAD) BG03_1140 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG03_1141 PF14097 Stage V sporulation protein AE1 BG03_1142 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_1144 PF06207 Protein of unknown function (DUF1002) BG03_1145 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BG03_1146 PF00583 Acetyltransferase (GNAT) family BG03_1147 PF03745 Domain of unknown function (DUF309) BG03_1149 PF02616 Segregation and condensation protein ScpA BG03_115 PF01638 HxlR-like helix-turn-helix BG03_1150 PF04079 Segregation and condensation complex subunit ScpB BG03_1152 PF01979 Amidohydrolase family BG03_1153 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BG03_1156 PF03123 CAT RNA binding domain BG03_1156 PF00874 PRD domain BG03_1157 PF02378 Phosphotransferase system, EIIC BG03_1157 PF00367 phosphotransferase system, EIIB BG03_1157 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG03_1158 PF00381 PTS HPr component phosphorylation site BG03_1159 PF05524 PEP-utilising enzyme, N-terminal BG03_1159 PF00391 PEP-utilising enzyme, mobile domain BG03_1159 PF02896 PEP-utilising enzyme, TIM barrel domain BG03_116 PF07690 Major Facilitator Superfamily BG03_1162 PF00881 Nitroreductase family BG03_1163 PF00990 Diguanylate cyclase, GGDEF domain BG03_1164 PF00144 Beta-lactamase BG03_1165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG03_1165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG03_1168 PF03079 ARD/ARD' family BG03_1169 PF00596 Class II Aldolase and Adducin N-terminal domain BG03_117 PF00248 Aldo/keto reductase family BG03_1171 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BG03_1171 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BG03_1172 PF00155 Aminotransferase class I and II BG03_1173 PF00795 Carbon-nitrogen hydrolase BG03_1174 PF01636 Phosphotransferase enzyme family BG03_1175 PF01008 Initiation factor 2 subunit family BG03_1178 PF03551 Transcriptional regulator PadR-like family BG03_1184 PF00293 NUDIX domain BG03_1185 PF00108 Thiolase, N-terminal domain BG03_1185 PF02803 Thiolase, C-terminal domain BG03_1186 PF02463 RecF/RecN/SMC N terminal domain BG03_1193 PF00005 ABC transporter BG03_1193 PF17912 MalK OB fold domain BG03_1193 PF03459 TOBE domain BG03_1194 PF16657 Maltogenic Amylase, C-terminal domain BG03_1194 PF00128 Alpha amylase, catalytic domain BG03_1195 PF00128 Alpha amylase, catalytic domain BG03_1195 PF02903 Alpha amylase, N-terminal ig-like domain BG03_1195 PF16657 Maltogenic Amylase, C-terminal domain BG03_1196 PF13416 Bacterial extracellular solute-binding protein BG03_1197 PF00528 Binding-protein-dependent transport system inner membrane component BG03_1198 PF00528 Binding-protein-dependent transport system inner membrane component BG03_1199 PF00356 Bacterial regulatory proteins, lacI family BG03_1199 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG03_12 PF04851 Type III restriction enzyme, res subunit BG03_12 PF00271 Helicase conserved C-terminal domain BG03_120 PF13460 NAD(P)H-binding BG03_1200 PF00155 Aminotransferase class I and II BG03_1202 PF00512 His Kinase A (phospho-acceptor) domain BG03_1202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_1206 PF01717 Cobalamin-independent synthase, Catalytic domain BG03_1206 PF08267 Cobalamin-independent synthase, N-terminal domain BG03_1207 PF00293 NUDIX domain BG03_1207 PF13344 Haloacid dehalogenase-like hydrolase BG03_121 PF01235 Sodium:alanine symporter family BG03_1212 PF07690 Major Facilitator Superfamily BG03_1218 PF14177 YkyB-like protein BG03_1219 PF02541 Ppx/GppA phosphatase family BG03_122 PF01235 Sodium:alanine symporter family BG03_1220 PF02503 Polyphosphate kinase middle domain BG03_1220 PF13089 Polyphosphate kinase N-terminal domain BG03_1220 PF17941 Polyphosphate kinase C-terminal domain 1 BG03_1220 PF13090 Polyphosphate kinase C-terminal domain 2 BG03_1222 PF10518 TAT (twin-arginine translocation) pathway signal sequence BG03_1222 PF00149 Calcineurin-like phosphoesterase BG03_1224 PF10388 EAL-domain associated signalling protein domain BG03_1224 PF00563 EAL domain BG03_1227 PF08796 Protein of unknown function (DUF1797) BG03_1229 PF04308 Ribonuclease H-like BG03_123 PF07662 Na+ dependent nucleoside transporter C-terminus BG03_123 PF01773 Na+ dependent nucleoside transporter N-terminus BG03_1232 PF03466 LysR substrate binding domain BG03_1232 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_1233 PF00132 Bacterial transferase hexapeptide (six repeats) BG03_1233 PF14602 Hexapeptide repeat of succinyl-transferase BG03_1233 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BG03_1234 PF01546 Peptidase family M20/M25/M40 BG03_1234 PF07687 Peptidase dimerisation domain BG03_1236 PF02254 TrkA-N domain BG03_1236 PF02080 TrkA-C domain BG03_1237 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG03_1237 PF17770 Ribonuclease J C-terminal domain BG03_1237 PF00753 Metallo-beta-lactamase superfamily BG03_124 PF07662 Na+ dependent nucleoside transporter C-terminus BG03_124 PF01773 Na+ dependent nucleoside transporter N-terminus BG03_1240 PF01327 Polypeptide deformylase BG03_1242 PF00676 Dehydrogenase E1 component BG03_1243 PF02780 Transketolase, C-terminal domain BG03_1243 PF02779 Transketolase, pyrimidine binding domain BG03_1244 PF02817 e3 binding domain BG03_1244 PF00364 Biotin-requiring enzyme BG03_1244 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG03_1245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG03_1245 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_1253 PF01276 Orn/Lys/Arg decarboxylase, major domain BG03_1253 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BG03_1254 PF05256 Uncharacterised protein family (UPF0223) BG03_1255 PF06335 Protein of unknown function (DUF1054) BG03_1257 PF00459 Inositol monophosphatase family BG03_126 PF00210 Ferritin-like domain BG03_1260 PF14036 YlaH-like protein BG03_1262 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BG03_1264 PF02562 PhoH-like protein BG03_1264 PF13638 PIN domain BG03_1266 PF07408 Protein of unknown function (DUF1507) BG03_1267 PF01098 Cell cycle protein BG03_1268 PF02436 Conserved carboxylase domain BG03_1268 PF02785 Biotin carboxylase C-terminal domain BG03_1268 PF00289 Biotin carboxylase, N-terminal domain BG03_1268 PF00364 Biotin-requiring enzyme BG03_1268 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG03_1268 PF00682 HMGL-like BG03_1269 PF02628 Cytochrome oxidase assembly protein BG03_1270 PF01040 UbiA prenyltransferase family BG03_1271 PF00034 Cytochrome c BG03_1271 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BG03_1271 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BG03_1272 PF00115 Cytochrome C and Quinol oxidase polypeptide I BG03_1273 PF00510 Cytochrome c oxidase subunit III BG03_1274 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BG03_1275 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BG03_1276 PF08868 YugN-like family BG03_1277 PF00188 Cysteine-rich secretory protein family BG03_1277 PF14504 CAP-associated N-terminal BG03_1278 PF14071 Putative coat protein BG03_1279 PF14003 YlbE-like protein BG03_128 PF03641 Possible lysine decarboxylase BG03_1280 PF00300 Histidine phosphatase superfamily (branch 1) BG03_1281 PF06133 Control of competence regulator ComK, YlbF/YmcA BG03_1282 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BG03_1285 PF07670 Nucleoside recognition BG03_1286 PF01467 Cytidylyltransferase-like BG03_1287 PF01734 Patatin-like phospholipase BG03_1288 PF05362 Lon protease (S16) C-terminal proteolytic domain BG03_1288 PF13180 PDZ domain BG03_1289 PF05636 HIGH Nucleotidyl Transferase BG03_1290 PF02620 Large ribosomal RNA subunit accumulation protein YceD BG03_1291 PF01783 Ribosomal L32p protein family BG03_1293 PF00583 Acetyltransferase (GNAT) family BG03_1294 PF02558 Ketopantoate reductase PanE/ApbA BG03_1294 PF08546 Ketopantoate reductase PanE/ApbA C terminal BG03_1295 PF10079 Bacillithiol biosynthesis BshC BG03_1296 PF01795 MraW methylase family BG03_1297 PF04977 Septum formation initiator BG03_1299 PF03717 Penicillin-binding Protein dimerisation domain BG03_1299 PF00905 Penicillin binding protein transpeptidase domain BG03_1299 PF03793 PASTA domain BG03_1300 PF01225 Mur ligase family, catalytic domain BG03_1300 PF02875 Mur ligase family, glutamate ligase domain BG03_1300 PF08245 Mur ligase middle domain BG03_1301 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BG03_1301 PF00953 Glycosyl transferase family 4 BG03_1302 PF02875 Mur ligase family, glutamate ligase domain BG03_1302 PF08245 Mur ligase middle domain BG03_1303 PF01098 Cell cycle protein BG03_1304 PF04101 Glycosyltransferase family 28 C-terminal domain BG03_1304 PF03033 Glycosyltransferase family 28 N-terminal domain BG03_1305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BG03_1305 PF01565 FAD binding domain BG03_1306 PF03799 Cell division protein FtsQ BG03_1306 PF08478 POTRA domain, FtsQ-type BG03_1307 PF02491 SHS2 domain inserted in FTSA BG03_1308 PF12327 FtsZ family, C-terminal domain BG03_1308 PF00091 Tubulin/FtsZ family, GTPase domain BG03_1309 PF03419 Sporulation factor SpoIIGA BG03_131 PF00210 Ferritin-like domain BG03_1310 PF04545 Sigma-70, region 4 BG03_1310 PF04542 Sigma-70 region 2 BG03_1311 PF04545 Sigma-70, region 4 BG03_1311 PF04539 Sigma-70 region 3 BG03_1311 PF04542 Sigma-70 region 2 BG03_1312 PF05239 PRC-barrel domain BG03_1314 PF01168 Alanine racemase, N-terminal domain BG03_1315 PF04472 Cell division protein SepF BG03_1316 PF02325 YGGT family BG03_1317 PF17774 Putative RNA-binding domain in YlmH BG03_1317 PF01479 S4 domain BG03_1318 PF05103 DivIVA protein BG03_1319 PF00133 tRNA synthetases class I (I, L, M and V) BG03_1319 PF08264 Anticodon-binding domain of tRNA BG03_1319 PF06827 Zinc finger found in FPG and IleRS BG03_132 PF01235 Sodium:alanine symporter family BG03_1321 PF01252 Signal peptidase (SPase) II BG03_1322 PF01479 S4 domain BG03_1322 PF00849 RNA pseudouridylate synthase BG03_1323 PF00156 Phosphoribosyl transferase domain BG03_1324 PF00860 Permease family BG03_1325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BG03_1325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BG03_1326 PF01979 Amidohydrolase family BG03_1327 PF00117 Glutamine amidotransferase class-I BG03_1327 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BG03_1328 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG03_1328 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BG03_1328 PF02142 MGS-like domain BG03_1329 PF00175 Oxidoreductase NAD-binding domain BG03_1329 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BG03_133 PF02080 TrkA-C domain BG03_1330 PF01180 Dihydroorotate dehydrogenase BG03_1331 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BG03_1332 PF00156 Phosphoribosyl transferase domain BG03_1337 PF01321 Creatinase/Prolidase N-terminal domain BG03_1337 PF00557 Metallopeptidase family M24 BG03_134 PF00999 Sodium/hydrogen exchanger family BG03_1340 PF00689 Cation transporting ATPase, C-terminus BG03_1340 PF00690 Cation transporter/ATPase, N-terminus BG03_1341 PF03755 YicC-like family, N-terminal region BG03_1341 PF08340 Domain of unknown function (DUF1732) BG03_1342 PF04025 Domain of unknown function (DUF370) BG03_1343 PF00625 Guanylate kinase BG03_1344 PF01192 RNA polymerase Rpb6 BG03_1345 PF04127 DNA / pantothenate metabolism flavoprotein BG03_1345 PF02441 Flavoprotein BG03_1346 PF17764 3′ DNA-binding domain (3′BD) BG03_1346 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BG03_1346 PF04851 Type III restriction enzyme, res subunit BG03_1346 PF18074 Primosomal protein N C-terminal domain BG03_1346 PF00271 Helicase conserved C-terminal domain BG03_1347 PF01327 Polypeptide deformylase BG03_1348 PF00551 Formyl transferase BG03_1348 PF02911 Formyl transferase, C-terminal domain BG03_1349 PF01029 NusB family BG03_1349 PF01189 16S rRNA methyltransferase RsmB/F BG03_135 PF09335 SNARE associated Golgi protein BG03_1350 PF04055 Radical SAM superfamily BG03_1352 PF03793 PASTA domain BG03_1352 PF00069 Protein kinase domain BG03_1353 PF03193 RsgA GTPase BG03_1353 PF16745 RsgA N-terminal domain BG03_1354 PF00834 Ribulose-phosphate 3 epimerase family BG03_1355 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BG03_1355 PF04263 Thiamin pyrophosphokinase, catalytic domain BG03_1356 PF00830 Ribosomal L28 family BG03_1357 PF03780 Asp23 family, cell envelope-related function BG03_1358 PF02734 DAK2 domain BG03_1358 PF13684 Dihydroxyacetone kinase family BG03_1359 PF00270 DEAD/DEAH box helicase BG03_1359 PF00271 Helicase conserved C-terminal domain BG03_1359 PF17191 RecG wedge domain BG03_1360 PF03061 Thioesterase superfamily BG03_1361 PF02504 Fatty acid synthesis protein BG03_1362 PF00698 Acyl transferase domain BG03_1364 PF00550 Phosphopantetheine attachment site BG03_1365 PF00035 Double-stranded RNA binding motif BG03_1365 PF14622 Ribonuclease-III-like BG03_1366 PF02463 RecF/RecN/SMC N terminal domain BG03_1366 PF06470 SMC proteins Flexible Hinge Domain BG03_1367 PF02881 SRP54-type protein, helical bundle domain BG03_1367 PF00448 SRP54-type protein, GTPase domain BG03_1368 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BG03_1369 PF02978 Signal peptide binding domain BG03_1369 PF02881 SRP54-type protein, helical bundle domain BG03_1369 PF00448 SRP54-type protein, GTPase domain BG03_137 PF01047 MarR family BG03_1370 PF00886 Ribosomal protein S16 BG03_1372 PF05239 PRC-barrel domain BG03_1372 PF01782 RimM N-terminal domain BG03_1373 PF01746 tRNA (Guanine-1)-methyltransferase BG03_1374 PF01245 Ribosomal protein L19 BG03_1375 PF10502 Signal peptidase, peptidase S26 BG03_1376 PF01926 50S ribosome-binding GTPase BG03_1377 PF01351 Ribonuclease HII BG03_1378 PF08442 ATP-grasp domain BG03_1378 PF00549 CoA-ligase BG03_1379 PF00549 CoA-ligase BG03_1379 PF02629 CoA binding domain BG03_138 PF02678 Pirin BG03_138 PF17954 Quercetinase C-terminal cupin domain BG03_1380 PF02481 DNA recombination-mediator protein A BG03_1381 PF01396 Topoisomerase DNA binding C4 zinc finger BG03_1381 PF01751 Toprim domain BG03_1381 PF01131 DNA topoisomerase BG03_1382 PF01134 Glucose inhibited division protein A BG03_1383 PF00589 Phage integrase family BG03_1383 PF02899 Phage integrase, N-terminal SAM-like domain BG03_1384 PF00227 Proteasome subunit BG03_1385 PF00004 ATPase family associated with various cellular activities (AAA) BG03_1385 PF07724 AAA domain (Cdc48 subfamily) BG03_1385 PF10431 C-terminal, D2-small domain, of ClpB protein BG03_1386 PF06018 CodY GAF-like domain BG03_1386 PF08222 CodY helix-turn-helix domain BG03_1387 PF00318 Ribosomal protein S2 BG03_1388 PF00889 Elongation factor TS BG03_1389 PF00696 Amino acid kinase family BG03_139 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG03_139 PF03413 Peptidase propeptide and YPEB domain BG03_139 PF07504 Fungalysin/Thermolysin Propeptide Motif BG03_139 PF01447 Thermolysin metallopeptidase, catalytic domain BG03_1390 PF01765 Ribosome recycling factor BG03_1391 PF01255 Putative undecaprenyl diphosphate synthase BG03_1393 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BG03_1393 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BG03_1393 PF13288 DXP reductoisomerase C-terminal domain BG03_1394 PF02163 Peptidase family M50 BG03_1394 PF13180 PDZ domain BG03_1395 PF04073 Aminoacyl-tRNA editing domain BG03_1395 PF03129 Anticodon binding domain BG03_1395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG03_1396 PF14579 Helix-hairpin-helix motif BG03_1396 PF14480 DNA polymerase III polC-type N-terminus I BG03_1396 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG03_1396 PF11490 DNA polymerase III polC-type N-terminus II BG03_1396 PF02811 PHP domain BG03_1396 PF00929 Exonuclease BG03_1396 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG03_1397 PF17384 RimP C-terminal SH3 domain BG03_1397 PF02576 RimP N-terminal domain BG03_1398 PF08529 NusA N-terminal domain BG03_1398 PF00575 S1 RNA binding domain BG03_1398 PF13184 NusA-like KH domain BG03_1399 PF04296 Protein of unknown function (DUF448) BG03_14 PF00313 'Cold-shock' DNA-binding domain BG03_140 PF01883 Iron-sulfur cluster assembly protein BG03_1400 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BG03_1401 PF00009 Elongation factor Tu GTP binding domain BG03_1401 PF11987 Translation-initiation factor 2 BG03_1401 PF04760 Translation initiation factor IF-2, N-terminal region BG03_1402 PF04456 Protein of unknown function (DUF503) BG03_1403 PF02033 Ribosome-binding factor A BG03_1404 PF16198 tRNA pseudouridylate synthase B C-terminal domain BG03_1404 PF01509 TruB family pseudouridylate synthase (N terminal domain) BG03_1405 PF01687 Riboflavin kinase BG03_1405 PF06574 FAD synthetase BG03_1406 PF00312 Ribosomal protein S15 BG03_1407 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BG03_1407 PF00575 S1 RNA binding domain BG03_1407 PF03725 3' exoribonuclease family, domain 2 BG03_1407 PF01138 3' exoribonuclease family, domain 1 BG03_1407 PF00013 KH domain BG03_1408 PF01522 Polysaccharide deacetylase BG03_1409 PF05193 Peptidase M16 inactive domain BG03_1409 PF00675 Insulinase (Peptidase family M16) BG03_141 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_141 PF02743 Cache domain BG03_141 PF00672 HAMP domain BG03_1410 PF05239 PRC-barrel domain BG03_1411 PF16924 Dipicolinate synthase subunit A N-terminal domain BG03_1411 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG03_1412 PF02441 Flavoprotein BG03_142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_142 PF00672 HAMP domain BG03_142 PF02743 Cache domain BG03_1420 PF02441 Flavoprotein BG03_1421 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG03_1421 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG03_1422 PF13840 ACT domain BG03_1422 PF00696 Amino acid kinase family BG03_1423 PF00701 Dihydrodipicolinate synthetase family BG03_1424 PF00753 Metallo-beta-lactamase superfamily BG03_1424 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG03_1424 PF17770 Ribonuclease J C-terminal domain BG03_1425 PF00574 Clp protease BG03_1426 PF14035 YlzJ-like protein BG03_1427 PF09397 Ftsk gamma domain BG03_1427 PF01580 FtsK/SpoIIIE family BG03_1427 PF17854 FtsK alpha domain BG03_1428 PF07702 UTRA domain BG03_1428 PF00392 Bacterial regulatory proteins, gntR family BG03_1433 PF05193 Peptidase M16 inactive domain BG03_1434 PF00675 Insulinase (Peptidase family M16) BG03_1434 PF05193 Peptidase M16 inactive domain BG03_1436 PF11588 Protein of unknown function (DUF3243) BG03_1437 PF11868 Protein of unknown function (DUF3388) BG03_1438 PF13464 Domain of unknown function (DUF4115) BG03_1439 PF01066 CDP-alcohol phosphatidyltransferase BG03_144 PF09334 tRNA synthetases class I (M) BG03_144 PF08264 Anticodon-binding domain of tRNA BG03_1440 PF18146 Damage-inducible protein CinA KH domain BG03_1440 PF00994 Probable molybdopterin binding domain BG03_1440 PF02464 Competence-damaged protein BG03_1441 PF00154 recA bacterial DNA recombination protein BG03_1442 PF00013 KH domain BG03_1442 PF01966 HD domain BG03_1442 PF12072 Domain of unknown function (DUF3552) BG03_1443 PF13277 YmdB-like protein BG03_1444 PF04232 Stage V sporulation protein S (SpoVS) BG03_1445 PF01244 Membrane dipeptidase (Peptidase family M19) BG03_1446 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BG03_1446 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BG03_1446 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BG03_1447 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_1448 PF00919 Uncharacterized protein family UPF0004 BG03_1448 PF01938 TRAM domain BG03_1448 PF04055 Radical SAM superfamily BG03_1449 PF06133 Control of competence regulator ComK, YlbF/YmcA BG03_1450 PF10628 Outer spore coat protein E (CotE) BG03_1451 PF05192 MutS domain III BG03_1451 PF00488 MutS domain V BG03_1451 PF05190 MutS family domain IV BG03_1451 PF05188 MutS domain II BG03_1451 PF01624 MutS domain I BG03_1452 PF01119 DNA mismatch repair protein, C-terminal domain BG03_1452 PF08676 MutL C terminal dimerisation domain BG03_1454 PF00005 ABC transporter BG03_1457 PF00486 Transcriptional regulatory protein, C terminal BG03_1457 PF00072 Response regulator receiver domain BG03_1458 PF00512 His Kinase A (phospho-acceptor) domain BG03_1458 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_1459 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BG03_146 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_146 PF00512 His Kinase A (phospho-acceptor) domain BG03_146 PF16736 Single Cache-like BG03_146 PF00989 PAS fold BG03_1461 PF00350 Dynamin family BG03_1462 PF00884 Sulfatase BG03_1464 PF07486 Cell Wall Hydrolase BG03_1465 PF00082 Subtilase family BG03_1466 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BG03_1467 PF00232 Glycosyl hydrolase family 1 BG03_1468 PF07702 UTRA domain BG03_1468 PF00392 Bacterial regulatory proteins, gntR family BG03_147 PF00486 Transcriptional regulatory protein, C terminal BG03_147 PF00072 Response regulator receiver domain BG03_1470 PF02585 GlcNAc-PI de-N-acetylase BG03_1471 PF00561 alpha/beta hydrolase fold BG03_1472 PF00155 Aminotransferase class I and II BG03_1472 PF00392 Bacterial regulatory proteins, gntR family BG03_1473 PF03788 LrgA family BG03_1474 PF04172 LrgB-like family BG03_1475 PF10787 Uncharacterised protein from bacillus cereus group BG03_1476 PF02567 Phenazine biosynthesis-like protein BG03_1478 PF02719 Polysaccharide biosynthesis protein BG03_1478 PF08485 Polysaccharide biosynthesis protein C-terminal BG03_1479 PF16363 GDP-mannose 4,6 dehydratase BG03_148 PF17969 L,D-transpeptidase C-terminal domain BG03_148 PF03734 L,D-transpeptidase catalytic domain BG03_1481 PF04101 Glycosyltransferase family 28 C-terminal domain BG03_1481 PF03033 Glycosyltransferase family 28 N-terminal domain BG03_1482 PF00563 EAL domain BG03_1482 PF00990 Diguanylate cyclase, GGDEF domain BG03_1482 PF03707 Bacterial signalling protein N terminal repeat BG03_1483 PF00561 alpha/beta hydrolase fold BG03_1487 PF01546 Peptidase family M20/M25/M40 BG03_1487 PF07687 Peptidase dimerisation domain BG03_1488 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain BG03_1488 PF00730 HhH-GPD superfamily base excision DNA repair protein BG03_1489 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BG03_1489 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BG03_1490 PF12833 Helix-turn-helix domain BG03_1490 PF02805 Metal binding domain of Ada BG03_1491 PF03372 Endonuclease/Exonuclease/phosphatase family BG03_1492 PF01497 Periplasmic binding protein BG03_1493 PF01032 FecCD transport family BG03_1494 PF01032 FecCD transport family BG03_1495 PF00005 ABC transporter BG03_1496 PF00756 Putative esterase BG03_1498 PF02583 Metal-sensitive transcriptional repressor BG03_1499 PF00403 Heavy-metal-associated domain BG03_15 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BG03_15 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BG03_150 PF09335 SNARE associated Golgi protein BG03_1500 PF00403 Heavy-metal-associated domain BG03_1502 PF00216 Bacterial DNA-binding protein BG03_1503 PF01226 Formate/nitrite transporter BG03_1504 PF00149 Calcineurin-like phosphoesterase BG03_1504 PF10518 TAT (twin-arginine translocation) pathway signal sequence BG03_1505 PF00704 Glycosyl hydrolases family 18 BG03_1505 PF00041 Fibronectin type III domain BG03_1506 PF00324 Amino acid permease BG03_1509 PF04238 Protein of unknown function (DUF420) BG03_1510 PF00465 Iron-containing alcohol dehydrogenase BG03_1511 PF08220 DeoR-like helix-turn-helix domain BG03_1511 PF00455 DeoR C terminal sensor domain BG03_1512 PF00294 pfkB family carbohydrate kinase BG03_1513 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG03_1513 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG03_1514 PF06725 3D domain BG03_1514 PF01476 LysM domain BG03_1517 PF17209 Hfq protein BG03_1520 PF17866 AAA lid domain BG03_1520 PF00004 ATPase family associated with various cellular activities (AAA) BG03_1522 PF03458 UPF0126 domain BG03_1523 PF16360 GTP-binding GTPase Middle Region BG03_1523 PF13167 GTP-binding GTPase N-terminal BG03_1523 PF01926 50S ribosome-binding GTPase BG03_1524 PF06838 Methionine gamma-lyase BG03_1525 PF13411 MerR HTH family regulatory protein BG03_1526 PF00120 Glutamine synthetase, catalytic domain BG03_1526 PF03951 Glutamine synthetase, beta-Grasp domain BG03_1532 PF03551 Transcriptional regulator PadR-like family BG03_1535 PF01726 LexA DNA binding domain BG03_1535 PF00717 Peptidase S24-like BG03_1536 PF00239 Resolvase, N terminal domain BG03_1537 PF05979 Bacterial protein of unknown function (DUF896) BG03_1538 PF00149 Calcineurin-like phosphoesterase BG03_1538 PF02872 5'-nucleotidase, C-terminal domain BG03_1539 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG03_1540 PF00005 ABC transporter BG03_1541 PF00528 Binding-protein-dependent transport system inner membrane component BG03_1542 PF00528 Binding-protein-dependent transport system inner membrane component BG03_1543 PF02779 Transketolase, pyrimidine binding domain BG03_1543 PF00456 Transketolase, thiamine diphosphate binding domain BG03_1543 PF02780 Transketolase, C-terminal domain BG03_1544 PF10747 Sporulation inhibitor of replication protein SirA BG03_1545 PF03672 Uncharacterised protein family (UPF0154) BG03_1546 PF00005 ABC transporter BG03_1546 PF00664 ABC transporter transmembrane region BG03_1547 PF00005 ABC transporter BG03_1547 PF00664 ABC transporter transmembrane region BG03_1550 PF01471 Putative peptidoglycan binding domain BG03_1550 PF01510 N-acetylmuramoyl-L-alanine amidase BG03_1552 PF01925 Sulfite exporter TauE/SafE BG03_1554 PF00293 NUDIX domain BG03_1554 PF13344 Haloacid dehalogenase-like hydrolase BG03_1555 PF04172 LrgB-like family BG03_1556 PF03788 LrgA family BG03_1557 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_1557 PF03466 LysR substrate binding domain BG03_1559 PF00005 ABC transporter BG03_1563 PF02683 Cytochrome C biogenesis protein transmembrane region BG03_1564 PF07301 Protein of unknown function (DUF1453) BG03_1567 PF11084 Protein of unknown function (DUF2621) BG03_1571 PF01209 ubiE/COQ5 methyltransferase family BG03_1572 PF09021 HutP BG03_1573 PF00221 Aromatic amino acid lyase BG03_1574 PF01175 Urocanase Rossmann-like domain BG03_1574 PF17392 Urocanase C-terminal domain BG03_1574 PF17391 Urocanase N-terminal domain BG03_1575 PF01979 Amidohydrolase family BG03_1576 PF00491 Arginase family BG03_1577 PF02559 CarD-like/TRCF domain BG03_1578 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BG03_1579 PF01645 Conserved region in glutamate synthase BG03_158 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_158 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_1581 PF00474 Sodium:solute symporter family BG03_1582 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_1583 PF01738 Dienelactone hydrolase family BG03_1584 PF00989 PAS fold BG03_1584 PF13188 PAS domain BG03_1584 PF13426 PAS domain BG03_1584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_1584 PF00512 His Kinase A (phospho-acceptor) domain BG03_1586 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_1586 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_1591 PF05532 CsbD-like BG03_1594 PF01381 Helix-turn-helix BG03_1595 PF00005 ABC transporter BG03_1597 PF00501 AMP-binding enzyme BG03_1597 PF13193 AMP-binding enzyme C-terminal domain BG03_1598 PF02632 BioY family BG03_1599 PF00501 AMP-binding enzyme BG03_1599 PF13193 AMP-binding enzyme C-terminal domain BG03_16 PF07516 SecA Wing and Scaffold domain BG03_16 PF07517 SecA DEAD-like domain BG03_16 PF01043 SecA preprotein cross-linking domain BG03_16 PF02810 SEC-C motif BG03_160 PF02096 60Kd inner membrane protein BG03_1600 PF00108 Thiolase, N-terminal domain BG03_1600 PF02803 Thiolase, C-terminal domain BG03_1602 PF00293 NUDIX domain BG03_1602 PF13344 Haloacid dehalogenase-like hydrolase BG03_1603 PF02272 DHHA1 domain BG03_1603 PF01411 tRNA synthetases class II (A) BG03_1603 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG03_1605 PF07690 Major Facilitator Superfamily BG03_1607 PF08179 Small acid-soluble spore protein P family BG03_1609 PF01522 Polysaccharide deacetylase BG03_1611 PF00694 Aconitase C-terminal domain BG03_1611 PF00330 Aconitase family (aconitate hydratase) BG03_1612 PF00005 ABC transporter BG03_1612 PF00664 ABC transporter transmembrane region BG03_1612 PF03412 Peptidase C39 family BG03_1614 PF00578 AhpC/TSA family BG03_1615 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG03_1615 PF14579 Helix-hairpin-helix motif BG03_1615 PF02811 PHP domain BG03_1615 PF00929 Exonuclease BG03_1615 PF01336 OB-fold nucleic acid binding domain BG03_1615 PF11490 DNA polymerase III polC-type N-terminus II BG03_1615 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG03_1616 PF13040 Fur-regulated basic protein B BG03_1617 PF08177 Small acid-soluble spore protein N family BG03_1619 PF00704 Glycosyl hydrolases family 18 BG03_1619 PF01476 LysM domain BG03_1620 PF03061 Thioesterase superfamily BG03_1621 PF01521 Iron-sulphur cluster biosynthesis BG03_1622 PF02660 Glycerol-3-phosphate acyltransferase BG03_1623 PF03477 ATP cone domain BG03_1623 PF13597 Anaerobic ribonucleoside-triphosphate reductase BG03_1625 PF00072 Response regulator receiver domain BG03_1625 PF00486 Transcriptional regulatory protein, C terminal BG03_1626 PF13180 PDZ domain BG03_1627 PF13380 CoA binding domain BG03_1628 PF01751 Toprim domain BG03_1628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_1628 PF00204 DNA gyrase B BG03_1628 PF00986 DNA gyrase B subunit, carboxyl terminus BG03_1629 PF03989 DNA gyrase C-terminal domain, beta-propeller BG03_1629 PF00521 DNA gyrase/topoisomerase IV, subunit A BG03_163 PF13520 Amino acid permease BG03_1630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG03_1630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG03_1634 PF13732 Domain of unknown function (DUF4162) BG03_1634 PF00005 ABC transporter BG03_1636 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_1637 PF08281 Sigma-70, region 4 BG03_1637 PF04542 Sigma-70 region 2 BG03_1639 PF03816 Cell envelope-related transcriptional attenuator domain BG03_164 PF07690 Major Facilitator Superfamily BG03_1640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_1642 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_1643 PF00899 ThiF family BG03_1645 PF08241 Methyltransferase domain BG03_1652 PF13520 Amino acid permease BG03_1655 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_1656 PF00037 4Fe-4S binding domain BG03_1656 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BG03_1656 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BG03_1656 PF01568 Molydopterin dinucleotide binding domain BG03_1656 PF00384 Molybdopterin oxidoreductase BG03_1657 PF07849 Protein of unknown function (DUF1641) BG03_1658 PF10057 Uncharacterized conserved protein (DUF2294) BG03_1659 PF02634 FdhD/NarQ family BG03_1660 PF04055 Radical SAM superfamily BG03_1660 PF06463 Molybdenum Cofactor Synthesis C BG03_1661 PF01226 Formate/nitrite transporter BG03_1662 PF00899 ThiF family BG03_1663 PF03453 MoeA N-terminal region (domain I and II) BG03_1663 PF03454 MoeA C-terminal region (domain IV) BG03_1663 PF00994 Probable molybdopterin binding domain BG03_1664 PF02391 MoaE protein BG03_1666 PF10609 NUBPL iron-transfer P-loop NTPase BG03_1669 PF06961 Protein of unknown function (DUF1294) BG03_1670 PF00892 EamA-like transporter family BG03_1671 PF02681 Divergent PAP2 family BG03_1672 PF13243 Squalene-hopene cyclase C-terminal domain BG03_1672 PF13249 Squalene-hopene cyclase N-terminal domain BG03_1675 PF00171 Aldehyde dehydrogenase family BG03_1677 PF00474 Sodium:solute symporter family BG03_1678 PF01156 Inosine-uridine preferring nucleoside hydrolase BG03_168 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_168 PF00672 HAMP domain BG03_168 PF02743 Cache domain BG03_1680 PF00206 Lyase BG03_1680 PF14698 Argininosuccinate lyase C-terminal BG03_1682 PF00106 short chain dehydrogenase BG03_1685 PF13276 HTH-like domain BG03_1685 PF00665 Integrase core domain BG03_1685 PF13333 Integrase core domain BG03_1687 PF00293 NUDIX domain BG03_1689 PF00258 Flavodoxin BG03_169 PF01910 Thiamine-binding protein BG03_1691 PF00313 'Cold-shock' DNA-binding domain BG03_1695 PF13039 Protein of unknown function (DUF3900) BG03_1695 PF13037 Domain of unknown function (DUF3898) BG03_1697 PF04294 VanW like protein BG03_1698 PF00528 Binding-protein-dependent transport system inner membrane component BG03_1699 PF00005 ABC transporter BG03_17 PF03462 PCRF domain BG03_17 PF00472 RF-1 domain BG03_170 PF10835 Protein of unknown function (DUF2573) BG03_1700 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG03_1701 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_1703 PF00899 ThiF family BG03_1704 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_1707 PF02308 MgtC family BG03_1708 PF08453 Peptidase family M9 N-terminal BG03_1708 PF01752 Collagenase BG03_1708 PF18496 Collagenase G catalytic helper subdomain BG03_171 PF01619 Proline dehydrogenase BG03_1710 PF00512 His Kinase A (phospho-acceptor) domain BG03_1710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_1710 PF00989 PAS fold BG03_1713 PF01022 Bacterial regulatory protein, arsR family BG03_1714 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_1714 PF00395 S-layer homology domain BG03_1715 PF07968 Leukocidin/Hemolysin toxin family BG03_1716 PF00440 Bacterial regulatory proteins, tetR family BG03_1719 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BG03_172 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_172 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_1721 PF01565 FAD binding domain BG03_1721 PF02913 FAD linked oxidases, C-terminal domain BG03_1722 PF01758 Sodium Bile acid symporter family BG03_1725 PF04299 Putative FMN-binding domain BG03_1726 PF18801 response regulator aspartate phosphatase H, N terminal BG03_1728 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BG03_1729 PF08240 Alcohol dehydrogenase GroES-like domain BG03_1729 PF00107 Zinc-binding dehydrogenase BG03_173 PF14115 YuzL-like protein BG03_1730 PF01022 Bacterial regulatory protein, arsR family BG03_1731 PF01494 FAD binding domain BG03_1732 PF03009 Glycerophosphoryl diester phosphodiesterase family BG03_1735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_1735 PF03466 LysR substrate binding domain BG03_1736 PF07690 Major Facilitator Superfamily BG03_1738 PF00144 Beta-lactamase BG03_174 PF00378 Enoyl-CoA hydratase/isomerase BG03_174 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BG03_174 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BG03_1740 PF04371 Porphyromonas-type peptidyl-arginine deiminase BG03_1744 PF04371 Porphyromonas-type peptidyl-arginine deiminase BG03_1745 PF08439 Oligopeptidase F BG03_1745 PF01432 Peptidase family M3 BG03_1746 PF00797 N-acetyltransferase BG03_1747 PF00128 Alpha amylase, catalytic domain BG03_1747 PF09154 Domain of unknown function (DUF1939) BG03_1749 PF01713 Smr domain BG03_1749 PF00488 MutS domain V BG03_175 PF00108 Thiolase, N-terminal domain BG03_175 PF02803 Thiolase, C-terminal domain BG03_1752 PF08240 Alcohol dehydrogenase GroES-like domain BG03_1752 PF00107 Zinc-binding dehydrogenase BG03_1753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_1753 PF03466 LysR substrate binding domain BG03_1755 PF10901 Protein of unknown function (DUF2690) BG03_176 PF02770 Acyl-CoA dehydrogenase, middle domain BG03_176 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG03_176 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG03_1760 PF05675 Protein of unknown function (DUF817) BG03_1761 PF01032 FecCD transport family BG03_1762 PF01032 FecCD transport family BG03_1763 PF01497 Periplasmic binding protein BG03_1766 PF03600 Citrate transporter BG03_1767 PF08830 Protein of unknown function (DUF1806) BG03_1768 PF02585 GlcNAc-PI de-N-acetylase BG03_177 PF00753 Metallo-beta-lactamase superfamily BG03_1771 PF07690 Major Facilitator Superfamily BG03_1772 PF00324 Amino acid permease BG03_1773 PF08240 Alcohol dehydrogenase GroES-like domain BG03_1773 PF00107 Zinc-binding dehydrogenase BG03_1774 PF03551 Transcriptional regulator PadR-like family BG03_1777 PF00753 Metallo-beta-lactamase superfamily BG03_178 PF00440 Bacterial regulatory proteins, tetR family BG03_178 PF13305 Tetracyclin repressor-like, C-terminal domain BG03_1786 PF00144 Beta-lactamase BG03_1789 PF12650 Domain of unknown function (DUF3784) BG03_1791 PF00753 Metallo-beta-lactamase superfamily BG03_1793 PF03063 Prismane/CO dehydrogenase family BG03_1796 PF13732 Domain of unknown function (DUF4162) BG03_1796 PF00005 ABC transporter BG03_1797 PF01061 ABC-2 type transporter BG03_1798 PF05656 Protein of unknown function (DUF805) BG03_18 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG03_1802 PF01810 LysE type translocator BG03_1803 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BG03_1803 PF00535 Glycosyl transferase family 2 BG03_1804 PF04542 Sigma-70 region 2 BG03_1805 PF12791 Anti-sigma factor N-terminus BG03_1806 PF01522 Polysaccharide deacetylase BG03_1806 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BG03_1807 PF01022 Bacterial regulatory protein, arsR family BG03_1810 PF01638 HxlR-like helix-turn-helix BG03_1811 PF02525 Flavodoxin-like fold BG03_1812 PF00501 AMP-binding enzyme BG03_1812 PF13193 AMP-binding enzyme C-terminal domain BG03_1813 PF13302 Acetyltransferase (GNAT) domain BG03_1817 PF02567 Phenazine biosynthesis-like protein BG03_182 PF00056 lactate/malate dehydrogenase, NAD binding domain BG03_182 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG03_1824 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG03_1824 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG03_1825 PF00392 Bacterial regulatory proteins, gntR family BG03_1825 PF07702 UTRA domain BG03_1826 PF03960 ArsC family BG03_1833 PF03928 Haem-degrading BG03_1835 PF14765 Polyketide synthase dehydratase BG03_1835 PF00698 Acyl transferase domain BG03_1835 PF08240 Alcohol dehydrogenase GroES-like domain BG03_1835 PF00550 Phosphopantetheine attachment site BG03_1835 PF00109 Beta-ketoacyl synthase, N-terminal domain BG03_1835 PF08659 KR domain BG03_1835 PF02801 Beta-ketoacyl synthase, C-terminal domain BG03_1835 PF16197 Ketoacyl-synthetase C-terminal extension BG03_1835 PF00107 Zinc-binding dehydrogenase BG03_1837 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BG03_1837 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BG03_1838 PF02779 Transketolase, pyrimidine binding domain BG03_1838 PF02780 Transketolase, C-terminal domain BG03_1838 PF00456 Transketolase, thiamine diphosphate binding domain BG03_1839 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BG03_1839 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG03_1840 PF00923 Transaldolase/Fructose-6-phosphate aldolase BG03_1841 PF02447 GntP family permease BG03_1842 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG03_1842 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG03_1843 PF10282 Lactonase, 7-bladed beta-propeller BG03_1844 PF06906 Protein of unknown function (DUF1272) BG03_1845 PF00805 Pentapeptide repeats (8 copies) BG03_1846 PF00892 EamA-like transporter family BG03_1847 PF01370 NAD dependent epimerase/dehydratase family BG03_1849 PF08484 C-methyltransferase C-terminal domain BG03_1849 PF08421 Putative zinc binding domain BG03_1850 PF16363 GDP-mannose 4,6 dehydratase BG03_1851 PF00483 Nucleotidyl transferase BG03_1853 PF13411 MerR HTH family regulatory protein BG03_1854 PF01595 Cyclin M transmembrane N-terminal domain BG03_1854 PF03471 Transporter associated domain BG03_1854 PF00571 CBS domain BG03_1856 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_1860 PF07690 Major Facilitator Superfamily BG03_1862 PF08003 Protein of unknown function (DUF1698) BG03_1868 PF01594 AI-2E family transporter BG03_187 PF03960 ArsC family BG03_1870 PF00579 tRNA synthetases class I (W and Y) BG03_1872 PF00005 ABC transporter BG03_1872 PF02687 FtsX-like permease family BG03_1872 PF12704 MacB-like periplasmic core domain BG03_1874 PF14602 Hexapeptide repeat of succinyl-transferase BG03_1874 PF12464 Maltose acetyltransferase BG03_1875 PF00480 ROK family BG03_1876 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_1877 PF00293 NUDIX domain BG03_1877 PF13344 Haloacid dehalogenase-like hydrolase BG03_188 PF01597 Glycine cleavage H-protein BG03_1882 PF13419 Haloacid dehalogenase-like hydrolase BG03_1887 PF00005 ABC transporter BG03_189 PF01751 Toprim domain BG03_1893 PF02887 Pyruvate kinase, alpha/beta domain BG03_1893 PF00224 Pyruvate kinase, barrel domain BG03_1893 PF00391 PEP-utilising enzyme, mobile domain BG03_1895 PF00881 Nitroreductase family BG03_1896 PF01638 HxlR-like helix-turn-helix BG03_1899 PF03129 Anticodon binding domain BG03_1899 PF13393 Histidyl-tRNA synthetase BG03_19 PF00005 ABC transporter BG03_190 PF00085 Thioredoxin BG03_1900 PF04073 Aminoacyl-tRNA editing domain BG03_1906 PF07739 TipAS antibiotic-recognition domain BG03_1906 PF13411 MerR HTH family regulatory protein BG03_1908 PF00440 Bacterial regulatory proteins, tetR family BG03_1909 PF07690 Major Facilitator Superfamily BG03_1910 PF01048 Phosphorylase superfamily BG03_1912 PF04231 Endonuclease I BG03_1913 PF03606 C4-dicarboxylate anaerobic carrier BG03_1914 PF03737 Aldolase/RraA BG03_1917 PF02361 Cobalt transport protein BG03_1918 PF00005 ABC transporter BG03_192 PF00005 ABC transporter BG03_192 PF09383 NIL domain BG03_1920 PF14256 YwiC-like protein BG03_1924 PF02525 Flavodoxin-like fold BG03_1926 PF02667 Short chain fatty acid transporter BG03_1927 PF17440 Thiol-activated cytolysin beta sandwich domain BG03_1927 PF01289 Thiol-activated cytolysin BG03_1928 PF00440 Bacterial regulatory proteins, tetR family BG03_1929 PF00893 Small Multidrug Resistance protein BG03_193 PF00528 Binding-protein-dependent transport system inner membrane component BG03_1930 PF17314 Family of unknown function (DUF5360) BG03_1932 PF13396 Phospholipase_D-nuclease N-terminal BG03_1933 PF13732 Domain of unknown function (DUF4162) BG03_1933 PF00005 ABC transporter BG03_1934 PF12679 ABC-2 family transporter protein BG03_1937 PF07690 Major Facilitator Superfamily BG03_1938 PF01047 MarR family BG03_1939 PF12697 Alpha/beta hydrolase family BG03_194 PF03180 NLPA lipoprotein BG03_1941 PF07690 Major Facilitator Superfamily BG03_1942 PF14044 NETI protein BG03_1944 PF09587 Bacterial capsule synthesis protein PGA_cap BG03_1945 PF02557 D-alanyl-D-alanine carboxypeptidase BG03_195 PF03180 NLPA lipoprotein BG03_1951 PF01510 N-acetylmuramoyl-L-alanine amidase BG03_1951 PF01476 LysM domain BG03_1951 PF01471 Putative peptidoglycan binding domain BG03_1953 PF01804 Penicillin amidase BG03_1954 PF00196 Bacterial regulatory proteins, luxR family BG03_1954 PF00072 Response regulator receiver domain BG03_196 PF00005 ABC transporter BG03_1960 PF00266 Aminotransferase class-V BG03_1961 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG03_1961 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG03_1961 PF01842 ACT domain BG03_1965 PF17676 LD-carboxypeptidase C-terminal domain BG03_1965 PF02016 LD-carboxypeptidase N-terminal domain BG03_1968 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_1968 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_1969 PF00486 Transcriptional regulatory protein, C terminal BG03_1969 PF00072 Response regulator receiver domain BG03_197 PF01458 Uncharacterized protein family (UPF0051) BG03_1970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_1970 PF00512 His Kinase A (phospho-acceptor) domain BG03_1970 PF00672 HAMP domain BG03_1973 PF02687 FtsX-like permease family BG03_1974 PF00005 ABC transporter BG03_1977 PF04072 Leucine carboxyl methyltransferase BG03_198 PF00266 Aminotransferase class-V BG03_1981 PF01381 Helix-turn-helix BG03_1983 PF00144 Beta-lactamase BG03_1985 PF00291 Pyridoxal-phosphate dependent enzyme BG03_199 PF01592 NifU-like N terminal domain BG03_1991 PF00672 HAMP domain BG03_1991 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_1991 PF00512 His Kinase A (phospho-acceptor) domain BG03_1992 PF00486 Transcriptional regulatory protein, C terminal BG03_1992 PF00072 Response regulator receiver domain BG03_1998 PF07690 Major Facilitator Superfamily BG03_1999 PF00175 Oxidoreductase NAD-binding domain BG03_1999 PF00258 Flavodoxin BG03_1999 PF00067 Cytochrome P450 BG03_1999 PF00667 FAD binding domain BG03_2 PF00158 Sigma-54 interaction domain BG03_2 PF00874 PRD domain BG03_2 PF03610 PTS system fructose IIA component BG03_20 PF18075 FtsX extracellular domain BG03_20 PF02687 FtsX-like permease family BG03_200 PF01458 Uncharacterized protein family (UPF0051) BG03_2000 PF13302 Acetyltransferase (GNAT) domain BG03_2001 PF08241 Methyltransferase domain BG03_2006 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_201 PF04892 VanZ like family BG03_2010 PF01037 Lrp/AsnC ligand binding domain BG03_2012 PF00440 Bacterial regulatory proteins, tetR family BG03_2013 PF07690 Major Facilitator Superfamily BG03_2014 PF00440 Bacterial regulatory proteins, tetR family BG03_2014 PF18665 Tetracyclin repressor-like, C-terminal domain BG03_2016 PF01609 Transposase DDE domain BG03_202 PF03551 Transcriptional regulator PadR-like family BG03_2020 PF01022 Bacterial regulatory protein, arsR family BG03_2021 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_2022 PF01758 Sodium Bile acid symporter family BG03_2023 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG03_2025 PF12746 GNAT acetyltransferase BG03_2027 PF01965 DJ-1/PfpI family BG03_2027 PF12833 Helix-turn-helix domain BG03_2028 PF00072 Response regulator receiver domain BG03_2028 PF04397 LytTr DNA-binding domain BG03_2029 PF05384 Sensor protein DegS BG03_2029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2029 PF07730 Histidine kinase BG03_2030 PF02687 FtsX-like permease family BG03_2031 PF00005 ABC transporter BG03_2032 PF12996 DUF based on E. rectale Gene description (DUF3880) BG03_2033 PF00561 alpha/beta hydrolase fold BG03_2037 PF07690 Major Facilitator Superfamily BG03_2038 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BG03_2038 PF13288 DXP reductoisomerase C-terminal domain BG03_2038 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BG03_204 PF02872 5'-nucleotidase, C-terminal domain BG03_2041 PF01040 UbiA prenyltransferase family BG03_2045 PF03466 LysR substrate binding domain BG03_2045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_2046 PF07690 Major Facilitator Superfamily BG03_2047 PF10057 Uncharacterized conserved protein (DUF2294) BG03_2048 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BG03_2048 PF00361 Proton-conducting membrane transporter BG03_2049 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BG03_205 PF08827 Domain of unknown function (DUF1805) BG03_2051 PF07859 alpha/beta hydrolase fold BG03_2053 PF07690 Major Facilitator Superfamily BG03_2055 PF00875 DNA photolyase BG03_2055 PF03441 FAD binding domain of DNA photolyase BG03_2056 PF03073 TspO/MBR family BG03_206 PF09560 Sporulation protein YunB (Spo_YunB) BG03_2063 PF11181 Heat induced stress protein YflT BG03_2066 PF01544 CorA-like Mg2+ transporter protein BG03_2067 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_2067 PF03466 LysR substrate binding domain BG03_2068 PF01979 Amidohydrolase family BG03_207 PF01551 Peptidase family M23 BG03_2071 PF00857 Isochorismatase family BG03_2072 PF00561 alpha/beta hydrolase fold BG03_2073 PF00149 Calcineurin-like phosphoesterase BG03_2073 PF02872 5'-nucleotidase, C-terminal domain BG03_2073 PF17936 Bacterial Ig domain BG03_2078 PF01235 Sodium:alanine symporter family BG03_208 PF04055 Radical SAM superfamily BG03_208 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BG03_2080 PF04960 Glutaminase BG03_2081 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2082 PF08664 YcbB domain BG03_2082 PF00072 Response regulator receiver domain BG03_2083 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_2084 PF03845 Spore germination protein BG03_2085 PF05504 Spore germination B3/ GerAC like, C-terminal BG03_2086 PF03807 NADP oxidoreductase coenzyme F420-dependent BG03_2086 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG03_2087 PF13520 Amino acid permease BG03_2088 PF01541 GIY-YIG catalytic domain BG03_2088 PF02151 UvrB/uvrC motif BG03_2088 PF12826 Helix-hairpin-helix motif BG03_2088 PF08459 UvrC Helix-hairpin-helix N-terminal BG03_2089 PF12833 Helix-turn-helix domain BG03_2089 PF17853 GGDEF-like domain BG03_2092 PF05791 Bacillus haemolytic enterotoxin (HBL) BG03_2093 PF05791 Bacillus haemolytic enterotoxin (HBL) BG03_2094 PF00512 His Kinase A (phospho-acceptor) domain BG03_2094 PF13188 PAS domain BG03_2094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2094 PF13426 PAS domain BG03_2094 PF00989 PAS fold BG03_2095 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_2096 PF03845 Spore germination protein BG03_2097 PF05504 Spore germination B3/ GerAC like, C-terminal BG03_2098 PF01381 Helix-turn-helix BG03_2099 PF17763 Glutaminase/Asparaginase C-terminal domain BG03_2099 PF00710 Asparaginase, N-terminal BG03_21 PF01471 Putative peptidoglycan binding domain BG03_21 PF03572 Peptidase family S41 BG03_21 PF17820 PDZ domain BG03_2100 PF00206 Lyase BG03_2100 PF10415 Fumarase C C-terminus BG03_2102 PF08240 Alcohol dehydrogenase GroES-like domain BG03_2102 PF00107 Zinc-binding dehydrogenase BG03_2102 PF13823 Alcohol dehydrogenase GroES-associated BG03_2103 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG03_2104 PF11553 Protein of unknown function (DUF3231) BG03_2105 PF10710 Protein of unknown function (DUF2512) BG03_2106 PF00753 Metallo-beta-lactamase superfamily BG03_2108 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BG03_2108 PF00391 PEP-utilising enzyme, mobile domain BG03_2109 PF00440 Bacterial regulatory proteins, tetR family BG03_2111 PF02915 Rubrerythrin BG03_2114 PF00395 S-layer homology domain BG03_2114 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_2119 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG03_2119 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BG03_2119 PF02770 Acyl-CoA dehydrogenase, middle domain BG03_212 PF10086 YhfC intramembrane metalloprotease BG03_2123 PF07454 Stage II sporulation protein P (SpoIIP) BG03_2124 PF03932 CutC family BG03_2125 PF10502 Signal peptidase, peptidase S26 BG03_2126 PF09339 IclR helix-turn-helix domain BG03_2126 PF01614 Bacterial transcriptional regulator BG03_2127 PF02682 Carboxyltransferase domain, subdomain C and D BG03_2128 PF02626 Carboxyltransferase domain, subdomain A and B BG03_2129 PF03746 LamB/YcsF family BG03_213 PF07739 TipAS antibiotic-recognition domain BG03_213 PF13411 MerR HTH family regulatory protein BG03_2132 PF01470 Pyroglutamyl peptidase BG03_2134 PF02146 Sir2 family BG03_2137 PF10502 Signal peptidase, peptidase S26 BG03_2139 PF00293 NUDIX domain BG03_214 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BG03_2142 PF13411 MerR HTH family regulatory protein BG03_2142 PF06445 GyrI-like small molecule binding domain BG03_2143 PF08713 DNA alkylation repair enzyme BG03_2145 PF00324 Amino acid permease BG03_2147 PF01925 Sulfite exporter TauE/SafE BG03_215 PF06265 Protein of unknown function (DUF1027) BG03_2153 PF00561 alpha/beta hydrolase fold BG03_2154 PF00486 Transcriptional regulatory protein, C terminal BG03_2154 PF00072 Response regulator receiver domain BG03_2155 PF00672 HAMP domain BG03_2155 PF00512 His Kinase A (phospho-acceptor) domain BG03_2156 PF13031 Protein of unknown function (DUF3892) BG03_2157 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BG03_2158 PF00155 Aminotransferase class I and II BG03_2158 PF00392 Bacterial regulatory proteins, gntR family BG03_2159 PF00892 EamA-like transporter family BG03_2162 PF00583 Acetyltransferase (GNAT) family BG03_2163 PF12833 Helix-turn-helix domain BG03_2167 PF05406 WGR domain BG03_2168 PF00293 NUDIX domain BG03_2170 PF00679 Elongation factor G C-terminus BG03_2170 PF00009 Elongation factor Tu GTP binding domain BG03_2170 PF03764 Elongation factor G, domain IV BG03_2170 PF14492 Elongation Factor G, domain II BG03_2171 PF01047 MarR family BG03_2172 PF00881 Nitroreductase family BG03_2174 PF01022 Bacterial regulatory protein, arsR family BG03_2176 PF01740 STAS domain BG03_2176 PF00916 Sulfate permease family BG03_2177 PF03831 PhnA domain BG03_2177 PF08274 PhnA Zinc-Ribbon BG03_2179 PF17863 AAA lid domain BG03_2179 PF07726 ATPase family associated with various cellular activities (AAA) BG03_218 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BG03_2183 PF00144 Beta-lactamase BG03_2184 PF13382 Adenine deaminase C-terminal domain BG03_2184 PF01979 Amidohydrolase family BG03_2186 PF00199 Catalase BG03_2186 PF06628 Catalase-related immune-responsive BG03_2187 PF00202 Aminotransferase class-III BG03_2188 PF07690 Major Facilitator Superfamily BG03_219 PF01934 Protein of unknown function DUF86 BG03_2191 PF17863 AAA lid domain BG03_2191 PF07726 ATPase family associated with various cellular activities (AAA) BG03_2195 PF12681 Glyoxalase-like domain BG03_2196 PF13302 Acetyltransferase (GNAT) domain BG03_2199 PF00072 Response regulator receiver domain BG03_2199 PF04397 LytTr DNA-binding domain BG03_22 PF17820 PDZ domain BG03_2201 PF10086 YhfC intramembrane metalloprotease BG03_2204 PF13443 Cro/C1-type HTH DNA-binding domain BG03_2205 PF11188 Protein of unknown function (DUF2975) BG03_2206 PF00245 Alkaline phosphatase BG03_2207 PF05547 Immune inhibitor A peptidase M6 BG03_2208 PF00487 Fatty acid desaturase BG03_2209 PF01139 tRNA-splicing ligase RtcB BG03_221 PF13344 Haloacid dehalogenase-like hydrolase BG03_2210 PF00324 Amino acid permease BG03_2211 PF01614 Bacterial transcriptional regulator BG03_2211 PF09339 IclR helix-turn-helix domain BG03_2212 PF01546 Peptidase family M20/M25/M40 BG03_2213 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG03_2213 PF03807 NADP oxidoreductase coenzyme F420-dependent BG03_2214 PF00696 Amino acid kinase family BG03_2214 PF01472 PUA domain BG03_2215 PF00171 Aldehyde dehydrogenase family BG03_2216 PF07662 Na+ dependent nucleoside transporter C-terminus BG03_2216 PF01773 Na+ dependent nucleoside transporter N-terminus BG03_2220 PF03992 Antibiotic biosynthesis monooxygenase BG03_2224 PF13302 Acetyltransferase (GNAT) domain BG03_2225 PF01791 DeoC/LacD family aldolase BG03_2227 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG03_2227 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG03_2228 PF04198 Putative sugar-binding domain BG03_2228 PF00325 Bacterial regulatory proteins, crp family BG03_2229 PF00005 ABC transporter BG03_223 PF02525 Flavodoxin-like fold BG03_2230 PF02653 Branched-chain amino acid transport system / permease component BG03_2231 PF02653 Branched-chain amino acid transport system / permease component BG03_2232 PF13407 Periplasmic binding protein domain BG03_2233 PF06039 Malate:quinone oxidoreductase (Mqo) BG03_2235 PF06725 3D domain BG03_2235 PF01476 LysM domain BG03_2238 PF01636 Phosphotransferase enzyme family BG03_2243 PF01817 Chorismate mutase type II BG03_2243 PF00793 DAHP synthetase I family BG03_2244 PF01264 Chorismate synthase BG03_2245 PF00155 Aminotransferase class I and II BG03_2246 PF02153 Prephenate dehydrogenase BG03_2246 PF01842 ACT domain BG03_2247 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG03_2249 PF00440 Bacterial regulatory proteins, tetR family BG03_2249 PF16295 Tetracyclin repressor-like, C-terminal domain BG03_225 PF15608 PELOTA RNA binding domain BG03_225 PF11202 Phosphoribosyl transferase (PRTase) BG03_2250 PF03176 MMPL family BG03_2259 PF12848 ABC transporter BG03_2259 PF00005 ABC transporter BG03_2260 PF00884 Sulfatase BG03_2261 PF03741 Integral membrane protein TerC family BG03_2262 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG03_2264 PF03611 PTS system sugar-specific permease component BG03_2266 PF01522 Polysaccharide deacetylase BG03_2267 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_2272 PF00583 Acetyltransferase (GNAT) family BG03_2273 PF12867 DinB superfamily BG03_2274 PF13536 Putative multidrug resistance efflux transporter BG03_2278 PF02522 Aminoglycoside 3-N-acetyltransferase BG03_2282 PF09297 NADH pyrophosphatase zinc ribbon domain BG03_2282 PF00293 NUDIX domain BG03_2284 PF00005 ABC transporter BG03_2285 PF09084 NMT1/THI5 like BG03_2286 PF00528 Binding-protein-dependent transport system inner membrane component BG03_2287 PF00296 Luciferase-like monooxygenase BG03_2289 PF01594 AI-2E family transporter BG03_229 PF04608 Phosphatidylglycerophosphatase A BG03_2299 PF00005 ABC transporter BG03_23 PF00005 ABC transporter BG03_23 PF00664 ABC transporter transmembrane region BG03_2303 PF03630 Fumble BG03_2304 PF07977 FabA-like domain BG03_2305 PF00155 Aminotransferase class I and II BG03_2313 PF08241 Methyltransferase domain BG03_2316 PF04226 Transglycosylase associated protein BG03_232 PF01106 NifU-like domain BG03_2321 PF07690 Major Facilitator Superfamily BG03_2322 PF12793 Sugar transport-related sRNA regulator N-term BG03_2322 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_2323 PF13171 Protein of unknown function (DUF4004) BG03_2324 PF04519 Polymer-forming cytoskeletal BG03_2326 PF07690 Major Facilitator Superfamily BG03_233 PF07315 Protein of unknown function (DUF1462) BG03_2335 PF07552 Spore Coat Protein X and V domain BG03_2336 PF02645 Uncharacterised protein, DegV family COG1307 BG03_2337 PF01037 Lrp/AsnC ligand binding domain BG03_2338 PF13520 Amino acid permease BG03_2339 PF01432 Peptidase family M3 BG03_2339 PF08439 Oligopeptidase F BG03_2340 PF03808 Glycosyl transferase WecB/TagA/CpsF family BG03_2342 PF01048 Phosphorylase superfamily BG03_2345 PF00486 Transcriptional regulatory protein, C terminal BG03_2345 PF00072 Response regulator receiver domain BG03_2346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2346 PF16736 Single Cache-like BG03_2346 PF00989 PAS fold BG03_2346 PF00512 His Kinase A (phospho-acceptor) domain BG03_2347 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BG03_2347 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BG03_2353 PF01965 DJ-1/PfpI family BG03_2356 PF13378 Enolase C-terminal domain-like BG03_2356 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG03_2357 PF00877 NlpC/P60 family BG03_2357 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BG03_2358 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_2361 PF04914 DltD protein BG03_2364 PF09335 SNARE associated Golgi protein BG03_2365 PF08876 Domain of unknown function (DUF1836) BG03_2368 PF04324 BFD-like [2Fe-2S] binding domain BG03_2368 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_237 PF03831 PhnA domain BG03_237 PF08274 PhnA Zinc-Ribbon BG03_2370 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_2370 PF04324 BFD-like [2Fe-2S] binding domain BG03_2371 PF13188 PAS domain BG03_2371 PF02954 Bacterial regulatory protein, Fis family BG03_2371 PF00158 Sigma-54 interaction domain BG03_2372 PF01266 FAD dependent oxidoreductase BG03_2373 PF05544 Proline racemase BG03_2374 PF05544 Proline racemase BG03_2375 PF00701 Dihydrodipicolinate synthetase family BG03_2376 PF00171 Aldehyde dehydrogenase family BG03_2377 PF01235 Sodium:alanine symporter family BG03_2378 PF02627 Carboxymuconolactone decarboxylase family BG03_2379 PF03193 RsgA GTPase BG03_238 PF03649 Uncharacterised protein family (UPF0014) BG03_2381 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BG03_2381 PF18416 N-acetylglucosamine binding protein domain 2 BG03_2382 PF02833 DHHA2 domain BG03_2382 PF01368 DHH family BG03_239 PF09383 NIL domain BG03_239 PF00005 ABC transporter BG03_2391 PF00570 HRDC domain BG03_2391 PF16124 RecQ zinc-binding BG03_2391 PF00271 Helicase conserved C-terminal domain BG03_2391 PF09382 RQC domain BG03_2391 PF00270 DEAD/DEAH box helicase BG03_2392 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BG03_2395 PF13538 UvrD-like helicase C-terminal domain BG03_24 PF01906 Putative heavy-metal-binding BG03_240 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_2402 PF00583 Acetyltransferase (GNAT) family BG03_2405 PF13567 Domain of unknown function (DUF4131) BG03_2405 PF03772 Competence protein BG03_2405 PF00753 Metallo-beta-lactamase superfamily BG03_2407 PF04237 YjbR BG03_2408 PF08241 Methyltransferase domain BG03_2409 PF10990 Protein of unknown function (DUF2809) BG03_241 PF07293 Protein of unknown function (DUF1450) BG03_2411 PF03781 Sulfatase-modifying factor enzyme 1 BG03_2412 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG03_2413 PF18416 N-acetylglucosamine binding protein domain 2 BG03_2413 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BG03_2414 PF13673 Acetyltransferase (GNAT) domain BG03_2415 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BG03_2418 PF00574 Clp protease BG03_2419 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BG03_242 PF01678 Diaminopimelate epimerase BG03_2420 PF00005 ABC transporter BG03_2420 PF00571 CBS domain BG03_2421 PF00528 Binding-protein-dependent transport system inner membrane component BG03_2428 PF13673 Acetyltransferase (GNAT) domain BG03_2428 PF04229 GrpB protein BG03_2429 PF00106 short chain dehydrogenase BG03_243 PF01521 Iron-sulphur cluster biosynthesis BG03_2431 PF00676 Dehydrogenase E1 component BG03_2432 PF02780 Transketolase, C-terminal domain BG03_2432 PF02779 Transketolase, pyrimidine binding domain BG03_2433 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG03_2433 PF02817 e3 binding domain BG03_2433 PF00364 Biotin-requiring enzyme BG03_2434 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG03_2434 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_2437 PF08220 DeoR-like helix-turn-helix domain BG03_2437 PF00455 DeoR C terminal sensor domain BG03_2438 PF13302 Acetyltransferase (GNAT) domain BG03_2441 PF02954 Bacterial regulatory protein, Fis family BG03_2441 PF00158 Sigma-54 interaction domain BG03_2441 PF01590 GAF domain BG03_2445 PF08359 YsiA-like protein, C-terminal region BG03_2445 PF00440 Bacterial regulatory proteins, tetR family BG03_2446 PF00266 Aminotransferase class-V BG03_2447 PF04199 Putative cyclase BG03_2448 PF03301 Tryptophan 2,3-dioxygenase BG03_2452 PF07486 Cell Wall Hydrolase BG03_2452 PF01471 Putative peptidoglycan binding domain BG03_2453 PF03413 Peptidase propeptide and YPEB domain BG03_2453 PF14620 YpeB sporulation BG03_2454 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BG03_2463 PF00561 alpha/beta hydrolase fold BG03_2464 PF00107 Zinc-binding dehydrogenase BG03_2464 PF08240 Alcohol dehydrogenase GroES-like domain BG03_2465 PF00155 Aminotransferase class I and II BG03_2465 PF00392 Bacterial regulatory proteins, gntR family BG03_2466 PF00892 EamA-like transporter family BG03_2467 PF08299 Bacterial dnaA protein helix-turn-helix BG03_2467 PF11638 DnaA N-terminal domain BG03_2467 PF00308 Bacterial dnaA protein BG03_2468 PF00344 SecY translocase BG03_2469 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_247 PF04463 Protein of unknown function (DUF523) BG03_2471 PF01447 Thermolysin metallopeptidase, catalytic domain BG03_2471 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG03_2471 PF03413 Peptidase propeptide and YPEB domain BG03_2471 PF07504 Fungalysin/Thermolysin Propeptide Motif BG03_2472 PF03714 Bacterial pullanase-associated domain BG03_2472 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG03_2472 PF00128 Alpha amylase, catalytic domain BG03_2473 PF01569 PAP2 superfamily BG03_2481 PF01266 FAD dependent oxidoreductase BG03_2489 PF01541 GIY-YIG catalytic domain BG03_2491 PF02673 Bacitracin resistance protein BacA BG03_2494 PF12867 DinB superfamily BG03_2496 PF08000 Bacterial PH domain BG03_2497 PF01734 Patatin-like phospholipase BG03_25 PF03358 NADPH-dependent FMN reductase BG03_250 PF06445 GyrI-like small molecule binding domain BG03_2500 PF09234 Domain of unknown function (DUF1963) BG03_2502 PF12706 Beta-lactamase superfamily domain BG03_2504 PF00293 NUDIX domain BG03_2505 PF02767 DNA polymerase III beta subunit, central domain BG03_2505 PF00712 DNA polymerase III beta subunit, N-terminal domain BG03_2505 PF02768 DNA polymerase III beta subunit, C-terminal domain BG03_2506 PF09297 NADH pyrophosphatase zinc ribbon domain BG03_2506 PF00293 NUDIX domain BG03_2509 PF07690 Major Facilitator Superfamily BG03_251 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_2513 PF13344 Haloacid dehalogenase-like hydrolase BG03_2513 PF00293 NUDIX domain BG03_2514 PF01784 NIF3 (NGG1p interacting factor 3) BG03_2516 PF01156 Inosine-uridine preferring nucleoside hydrolase BG03_2517 PF01270 Glycosyl hydrolases family 8 BG03_2518 PF00892 EamA-like transporter family BG03_2519 PF00392 Bacterial regulatory proteins, gntR family BG03_2519 PF00155 Aminotransferase class I and II BG03_252 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_2522 PF03009 Glycerophosphoryl diester phosphodiesterase family BG03_2527 PF07690 Major Facilitator Superfamily BG03_2528 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BG03_2528 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BG03_2529 PF07690 Major Facilitator Superfamily BG03_253 PF13344 Haloacid dehalogenase-like hydrolase BG03_253 PF00293 NUDIX domain BG03_2531 PF01965 DJ-1/PfpI family BG03_2539 PF01569 PAP2 superfamily BG03_2540 PF08240 Alcohol dehydrogenase GroES-like domain BG03_2540 PF00107 Zinc-binding dehydrogenase BG03_2541 PF18719 ArlS sensor domain BG03_2541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2541 PF00512 His Kinase A (phospho-acceptor) domain BG03_2542 PF00486 Transcriptional regulatory protein, C terminal BG03_2542 PF00072 Response regulator receiver domain BG03_2544 PF04229 GrpB protein BG03_2546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2546 PF00512 His Kinase A (phospho-acceptor) domain BG03_2549 PF00005 ABC transporter BG03_2549 PF12558 ATP-binding cassette cobalt transporter BG03_255 PF06725 3D domain BG03_2550 PF07155 ECF-type riboflavin transporter, S component BG03_2551 PF01177 Asp/Glu/Hydantoin racemase BG03_2552 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG03_2553 PF00989 PAS fold BG03_2553 PF13188 PAS domain BG03_2553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2553 PF00512 His Kinase A (phospho-acceptor) domain BG03_2553 PF13426 PAS domain BG03_2556 PF00067 Cytochrome P450 BG03_2558 PF07561 Domain of Unknown Function (DUF1540) BG03_2559 PF00132 Bacterial transferase hexapeptide (six repeats) BG03_256 PF00883 Cytosol aminopeptidase family, catalytic domain BG03_256 PF02789 Cytosol aminopeptidase family, N-terminal domain BG03_2561 PF00067 Cytochrome P450 BG03_257 PF10372 Bacterial membrane-spanning protein N-terminus BG03_257 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG03_2577 PF04539 Sigma-70 region 3 BG03_2577 PF04542 Sigma-70 region 2 BG03_2577 PF04545 Sigma-70, region 4 BG03_258 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BG03_258 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BG03_258 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BG03_258 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BG03_2582 PF03070 TENA/THI-4/PQQC family BG03_2583 PF07478 D-ala D-ala ligase C-terminus BG03_2583 PF01820 D-ala D-ala ligase N-terminus BG03_2584 PF00155 Aminotransferase class I and II BG03_2584 PF00392 Bacterial regulatory proteins, gntR family BG03_2585 PF03447 Homoserine dehydrogenase, NAD binding domain BG03_2585 PF01842 ACT domain BG03_2585 PF00742 Homoserine dehydrogenase BG03_2589 PF02687 FtsX-like permease family BG03_259 PF00483 Nucleotidyl transferase BG03_2590 PF00005 ABC transporter BG03_2595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2596 PF00486 Transcriptional regulatory protein, C terminal BG03_2596 PF00072 Response regulator receiver domain BG03_2597 PF03069 Acetamidase/Formamidase family BG03_2598 PF07486 Cell Wall Hydrolase BG03_2599 PF01921 tRNA synthetases class I (K) BG03_26 PF09278 MerR, DNA binding BG03_26 PF00376 MerR family regulatory protein BG03_2601 PF08450 SMP-30/Gluconolactonase/LRE-like region BG03_2603 PF08245 Mur ligase middle domain BG03_2603 PF02875 Mur ligase family, glutamate ligase domain BG03_2603 PF01225 Mur ligase family, catalytic domain BG03_2604 PF08241 Methyltransferase domain BG03_2605 PF04239 Protein of unknown function (DUF421) BG03_2609 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal BG03_2609 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal BG03_261 PF02632 BioY family BG03_2610 PF00155 Aminotransferase class I and II BG03_2610 PF00392 Bacterial regulatory proteins, gntR family BG03_2613 PF12833 Helix-turn-helix domain BG03_2614 PF01636 Phosphotransferase enzyme family BG03_2616 PF00005 ABC transporter BG03_2619 PF13847 Methyltransferase domain BG03_2621 PF07690 Major Facilitator Superfamily BG03_2624 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG03_2624 PF07504 Fungalysin/Thermolysin Propeptide Motif BG03_2624 PF01447 Thermolysin metallopeptidase, catalytic domain BG03_2624 PF03413 Peptidase propeptide and YPEB domain BG03_2628 PF01048 Phosphorylase superfamily BG03_2629 PF13021 Domain of unknown function (DUF3885) BG03_263 PF03061 Thioesterase superfamily BG03_2630 PF01966 HD domain BG03_2631 PF00486 Transcriptional regulatory protein, C terminal BG03_2631 PF00072 Response regulator receiver domain BG03_2632 PF00512 His Kinase A (phospho-acceptor) domain BG03_2632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_2633 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_2633 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_2634 PF05163 DinB family BG03_2636 PF00485 Phosphoribulokinase / Uridine kinase family BG03_264 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG03_264 PF03129 Anticodon binding domain BG03_2640 PF16177 Acetyl-coenzyme A synthetase N-terminus BG03_2640 PF00501 AMP-binding enzyme BG03_2640 PF13193 AMP-binding enzyme C-terminal domain BG03_2641 PF01039 Carboxyl transferase domain BG03_2642 PF00378 Enoyl-CoA hydratase/isomerase BG03_2643 PF00682 HMGL-like BG03_2644 PF00364 Biotin-requiring enzyme BG03_2645 PF02785 Biotin carboxylase C-terminal domain BG03_2645 PF00289 Biotin carboxylase, N-terminal domain BG03_2645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BG03_2646 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG03_2646 PF02770 Acyl-CoA dehydrogenase, middle domain BG03_2646 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG03_2649 PF08359 YsiA-like protein, C-terminal region BG03_2649 PF00440 Bacterial regulatory proteins, tetR family BG03_2651 PF00005 ABC transporter BG03_2653 PF00149 Calcineurin-like phosphoesterase BG03_2658 PF04542 Sigma-70 region 2 BG03_2658 PF08281 Sigma-70, region 4 BG03_2659 PF03717 Penicillin-binding Protein dimerisation domain BG03_2659 PF05223 NTF2-like N-terminal transpeptidase domain BG03_2659 PF00905 Penicillin binding protein transpeptidase domain BG03_2661 PF13739 Deacetylase PdaC BG03_2661 PF11738 Protein of unknown function (DUF3298) BG03_2661 PF01522 Polysaccharide deacetylase BG03_2662 PF00355 Rieske [2Fe-2S] domain BG03_2663 PF00282 Pyridoxal-dependent decarboxylase conserved domain BG03_2669 PF03313 Serine dehydratase alpha chain BG03_267 PF03600 Citrate transporter BG03_2670 PF01842 ACT domain BG03_2670 PF03315 Serine dehydratase beta chain BG03_2672 PF01734 Patatin-like phospholipase BG03_2672 PF00027 Cyclic nucleotide-binding domain BG03_2674 PF00132 Bacterial transferase hexapeptide (six repeats) BG03_2676 PF07687 Peptidase dimerisation domain BG03_2676 PF01546 Peptidase family M20/M25/M40 BG03_2678 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BG03_2679 PF00300 Histidine phosphatase superfamily (branch 1) BG03_268 PF00929 Exonuclease BG03_2680 PF01047 MarR family BG03_2681 PF00205 Thiamine pyrophosphate enzyme, central domain BG03_2681 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_2681 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG03_2682 PF08241 Methyltransferase domain BG03_2684 PF03848 Tellurite resistance protein TehB BG03_2684 PF09313 Domain of unknown function (DUF1971) BG03_2685 PF00005 ABC transporter BG03_2688 PF17932 Tetracyclin repressor-like, C-terminal domain BG03_2688 PF00440 Bacterial regulatory proteins, tetR family BG03_269 PF08810 Kinase associated protein B BG03_2692 PF00270 DEAD/DEAH box helicase BG03_2692 PF00271 Helicase conserved C-terminal domain BG03_2695 PF01385 Probable transposase BG03_2695 PF07282 Putative transposase DNA-binding domain BG03_2695 PF12323 Helix-turn-helix domain BG03_2696 PF00753 Metallo-beta-lactamase superfamily BG03_2696 PF16123 Hydroxyacylglutathione hydrolase C-terminus BG03_27 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_27 PF03466 LysR substrate binding domain BG03_2700 PF07690 Major Facilitator Superfamily BG03_2701 PF01047 MarR family BG03_2702 PF00291 Pyridoxal-phosphate dependent enzyme BG03_2703 PF00266 Aminotransferase class-V BG03_2704 PF02660 Glycerol-3-phosphate acyltransferase BG03_2705 PF01869 BadF/BadG/BcrA/BcrD ATPase family BG03_2706 PF03702 Anhydro-N-acetylmuramic acid kinase BG03_2708 PF02378 Phosphotransferase system, EIIC BG03_2710 PF02638 Glycosyl hydrolase-like 10 BG03_2715 PF04542 Sigma-70 region 2 BG03_2715 PF08281 Sigma-70, region 4 BG03_2715 PF12680 SnoaL-like domain BG03_2716 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_2718 PF04607 Region found in RelA / SpoT proteins BG03_2718 PF13291 ACT domain BG03_2718 PF02824 TGS domain BG03_272 PF00155 Aminotransferase class I and II BG03_2725 PF01381 Helix-turn-helix BG03_2725 PF07883 Cupin domain BG03_2726 PF01810 LysE type translocator BG03_2729 PF00005 ABC transporter BG03_2729 PF00664 ABC transporter transmembrane region BG03_2730 PF00664 ABC transporter transmembrane region BG03_2730 PF00005 ABC transporter BG03_2733 PF03475 3-alpha domain BG03_2733 PF03473 MOSC domain BG03_2734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_2734 PF03466 LysR substrate binding domain BG03_2737 PF02774 Semialdehyde dehydrogenase, dimerisation domain BG03_2737 PF01118 Semialdehyde dehydrogenase, NAD binding domain BG03_2738 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_2738 PF03466 LysR substrate binding domain BG03_274 PF00561 alpha/beta hydrolase fold BG03_274 PF08386 TAP-like protein BG03_275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG03_275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG03_2757 PF01510 N-acetylmuramoyl-L-alanine amidase BG03_2757 PF12123 N-acetylmuramoyl-l-alanine amidase BG03_2758 PF04688 SPP1 phage holin BG03_276 PF01037 Lrp/AsnC ligand binding domain BG03_277 PF00155 Aminotransferase class I and II BG03_278 PF00575 S1 RNA binding domain BG03_2781 PF00069 Protein kinase domain BG03_2781 PF13360 PQQ-like domain BG03_2785 PF18277 AbrB C-terminal domain BG03_2785 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG03_279 PF04070 Domain of unknown function (DUF378) BG03_28 PF03601 Conserved hypothetical protein 698 BG03_280 PF00342 Phosphoglucose isomerase BG03_2803 PF01612 3'-5' exonuclease BG03_2803 PF00476 DNA polymerase family A BG03_2803 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BG03_2803 PF01367 5'-3' exonuclease, C-terminal SAM fold BG03_2804 PF02767 DNA polymerase III beta subunit, central domain BG03_2804 PF00712 DNA polymerase III beta subunit, N-terminal domain BG03_2804 PF02768 DNA polymerase III beta subunit, C-terminal domain BG03_281 PF02254 TrkA-N domain BG03_281 PF07885 Ion channel BG03_282 PF08868 YugN-like family BG03_2828 PF00313 'Cold-shock' DNA-binding domain BG03_283 PF02308 MgtC family BG03_2830 PF13302 Acetyltransferase (GNAT) domain BG03_2833 PF00561 alpha/beta hydrolase fold BG03_2838 PF00583 Acetyltransferase (GNAT) family BG03_2840 PF00302 Chloramphenicol acetyltransferase BG03_2842 PF03176 MMPL family BG03_2845 PF01047 MarR family BG03_2853 PF13649 Methyltransferase domain BG03_2855 PF00205 Thiamine pyrophosphate enzyme, central domain BG03_2855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_2855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG03_2858 PF07690 Major Facilitator Superfamily BG03_2860 PF00005 ABC transporter BG03_2861 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG03_2861 PF03129 Anticodon binding domain BG03_2861 PF02824 TGS domain BG03_2861 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG03_2862 PF00849 RNA pseudouridylate synthase BG03_2862 PF01479 S4 domain BG03_2863 PF16291 Domain of unknown function (DUF4937 BG03_2866 PF01235 Sodium:alanine symporter family BG03_2867 PF00082 Subtilase family BG03_2868 PF05163 DinB family BG03_2870 PF00216 Bacterial DNA-binding protein BG03_2873 PF07690 Major Facilitator Superfamily BG03_2874 PF03621 MbtH-like protein BG03_2875 PF00975 Thioesterase domain BG03_2875 PF13193 AMP-binding enzyme C-terminal domain BG03_2875 PF00501 AMP-binding enzyme BG03_2875 PF00550 Phosphopantetheine attachment site BG03_2875 PF00668 Condensation domain BG03_2876 PF00550 Phosphopantetheine attachment site BG03_2876 PF00857 Isochorismatase family BG03_2877 PF00501 AMP-binding enzyme BG03_2877 PF13193 AMP-binding enzyme C-terminal domain BG03_2878 PF00425 chorismate binding enzyme BG03_2879 PF00106 short chain dehydrogenase BG03_2880 PF07690 Major Facilitator Superfamily BG03_2882 PF01022 Bacterial regulatory protein, arsR family BG03_2884 PF13476 AAA domain BG03_2885 PF00149 Calcineurin-like phosphoesterase BG03_2885 PF12320 Type 5 capsule protein repressor C-terminal domain BG03_2886 PF10763 Protein of unknown function (DUF2584) BG03_2888 PF00378 Enoyl-CoA hydratase/isomerase BG03_2889 PF01810 LysE type translocator BG03_2890 PF00171 Aldehyde dehydrogenase family BG03_2891 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BG03_2891 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG03_2892 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG03_2892 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG03_2892 PF02770 Acyl-CoA dehydrogenase, middle domain BG03_2894 PF03972 MmgE/PrpD family BG03_2895 PF00285 Citrate synthase, C-terminal domain BG03_2896 PF01521 Iron-sulphur cluster biosynthesis BG03_2897 PF07690 Major Facilitator Superfamily BG03_2899 PF00912 Transglycosylase BG03_2899 PF00905 Penicillin binding protein transpeptidase domain BG03_2906 PF10676 Spore germination protein gerPA/gerPF BG03_291 PF05698 Bacterial trigger factor protein (TF) C-terminus BG03_291 PF05697 Bacterial trigger factor protein (TF) BG03_2916 PF08281 Sigma-70, region 4 BG03_2916 PF04542 Sigma-70 region 2 BG03_2925 PF00085 Thioredoxin BG03_2926 PF01569 PAP2 superfamily BG03_2927 PF16916 Dimerisation domain of Zinc Transporter BG03_2927 PF01545 Cation efflux family BG03_2928 PF07070 SpoOM protein BG03_2929 PF08239 Bacterial SH3 domain BG03_2929 PF00069 Protein kinase domain BG03_2931 PF14162 YozD-like protein BG03_2934 PF06855 YozE SAM-like fold BG03_2935 PF14122 YokU-like protein, putative antitoxin BG03_2936 PF12544 Lysine-2,3-aminomutase BG03_2937 PF13426 PAS domain BG03_2937 PF02954 Bacterial regulatory protein, Fis family BG03_2937 PF00158 Sigma-54 interaction domain BG03_2938 PF00583 Acetyltransferase (GNAT) family BG03_2939 PF07687 Peptidase dimerisation domain BG03_2939 PF01546 Peptidase family M20/M25/M40 BG03_2940 PF01144 Coenzyme A transferase BG03_2941 PF01144 Coenzyme A transferase BG03_2942 PF00202 Aminotransferase class-III BG03_2944 PF09385 Histidine kinase N terminal BG03_2945 PF07997 Protein of unknown function (DUF1694) BG03_2946 PF00171 Aldehyde dehydrogenase family BG03_2947 PF03471 Transporter associated domain BG03_2947 PF01595 Cyclin M transmembrane N-terminal domain BG03_2947 PF00571 CBS domain BG03_2953 PF13520 Amino acid permease BG03_2954 PF00528 Binding-protein-dependent transport system inner membrane component BG03_2955 PF00005 ABC transporter BG03_2955 PF00571 CBS domain BG03_2959 PF03358 NADPH-dependent FMN reductase BG03_2962 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG03_2962 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BG03_2963 PF02447 GntP family permease BG03_2964 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG03_2964 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG03_2966 PF00144 Beta-lactamase BG03_2969 PF00107 Zinc-binding dehydrogenase BG03_2969 PF08240 Alcohol dehydrogenase GroES-like domain BG03_2970 PF01418 Helix-turn-helix domain, rpiR family BG03_2970 PF01380 SIS domain BG03_2971 PF00072 Response regulator receiver domain BG03_2971 PF00196 Bacterial regulatory proteins, luxR family BG03_2972 PF07730 Histidine kinase BG03_2972 PF13185 GAF domain BG03_2973 PF00924 Mechanosensitive ion channel BG03_2974 PF00011 Hsp20/alpha crystallin family BG03_2975 PF00293 NUDIX domain BG03_2976 PF00857 Isochorismatase family BG03_2978 PF00881 Nitroreductase family BG03_2979 PF01063 Amino-transferase class IV BG03_2980 PF01497 Periplasmic binding protein BG03_2984 PF00733 Asparagine synthase BG03_2984 PF13537 Glutamine amidotransferase domain BG03_2985 PF00011 Hsp20/alpha crystallin family BG03_2986 PF02630 SCO1/SenC BG03_2988 PF02645 Uncharacterised protein, DegV family COG1307 BG03_2990 PF00902 Sec-independent protein translocase protein (TatC) BG03_2991 PF02416 mttA/Hcf106 family BG03_2992 PF03006 Haemolysin-III related BG03_2993 PF01553 Acyltransferase BG03_2994 PF02525 Flavodoxin-like fold BG03_2995 PF03717 Penicillin-binding Protein dimerisation domain BG03_2995 PF05223 NTF2-like N-terminal transpeptidase domain BG03_2995 PF00905 Penicillin binding protein transpeptidase domain BG03_2996 PF00186 Dihydrofolate reductase BG03_2997 PF00303 Thymidylate synthase BG03_2998 PF07930 D-aminopeptidase, domain B BG03_2998 PF00144 Beta-lactamase BG03_3001 PF13419 Haloacid dehalogenase-like hydrolase BG03_3002 PF14005 YpjP-like protein BG03_3003 PF05975 Bacterial ABC transporter protein EcsB BG03_3004 PF00005 ABC transporter BG03_3007 PF00583 Acetyltransferase (GNAT) family BG03_3008 PF01980 tRNA-methyltransferase O BG03_3009 PF01177 Asp/Glu/Hydantoin racemase BG03_3010 PF00465 Iron-containing alcohol dehydrogenase BG03_3012 PF13419 Haloacid dehalogenase-like hydrolase BG03_3013 PF13419 Haloacid dehalogenase-like hydrolase BG03_3014 PF10997 Alternate to MurJ BG03_3017 PF00209 Sodium:neurotransmitter symporter family BG03_3019 PF02595 Glycerate kinase family BG03_3020 PF01336 OB-fold nucleic acid binding domain BG03_3020 PF00152 tRNA synthetases class II (D, K and N) BG03_3023 PF00133 tRNA synthetases class I (I, L, M and V) BG03_3023 PF08264 Anticodon-binding domain of tRNA BG03_3027 PF03485 Arginyl tRNA synthetase N terminal domain BG03_3027 PF05746 DALR anticodon binding domain BG03_3027 PF00750 tRNA synthetases class I (R) BG03_3028 PF04445 Putative SAM-dependent methyltransferase BG03_3029 PF06491 Disulphide isomerase BG03_3031 PF08712 Scaffold protein Nfu/NifU N terminal BG03_3031 PF13769 Virulence factor BG03_3032 PF00436 Single-strand binding protein family BG03_3035 PF12848 ABC transporter BG03_3035 PF16326 ABC transporter C-terminal domain BG03_3035 PF00005 ABC transporter BG03_3036 PF01966 HD domain BG03_3038 PF04232 Stage V sporulation protein S (SpoVS) BG03_3044 PF01814 Hemerythrin HHE cation binding domain BG03_3044 PF04405 Domain of Unknown function (DUF542) BG03_3045 PF04324 BFD-like [2Fe-2S] binding domain BG03_3045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BG03_3045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BG03_3045 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_3045 PF18267 Rubredoxin NAD+ reductase C-terminal domain BG03_3046 PF00355 Rieske [2Fe-2S] domain BG03_3047 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG03_3048 PF01903 CbiX BG03_3053 PF07690 Major Facilitator Superfamily BG03_3055 PF02391 MoaE protein BG03_3056 PF03453 MoeA N-terminal region (domain I and II) BG03_3056 PF03454 MoeA C-terminal region (domain IV) BG03_3056 PF00994 Probable molybdopterin binding domain BG03_3057 PF00899 ThiF family BG03_3058 PF06463 Molybdenum Cofactor Synthesis C BG03_3058 PF04055 Radical SAM superfamily BG03_3059 PF00325 Bacterial regulatory proteins, crp family BG03_3059 PF00027 Cyclic nucleotide-binding domain BG03_3061 PF00005 ABC transporter BG03_3062 PF00155 Aminotransferase class I and II BG03_3062 PF00392 Bacterial regulatory proteins, gntR family BG03_3063 PF02665 Nitrate reductase gamma subunit BG03_3064 PF02613 Nitrate reductase delta subunit BG03_3065 PF13247 4Fe-4S dicluster domain BG03_3065 PF14711 Respiratory nitrate reductase beta C-terminal BG03_3066 PF00384 Molybdopterin oxidoreductase BG03_3066 PF14710 Respiratory nitrate reductase alpha N-terminal BG03_3066 PF01568 Molydopterin dinucleotide binding domain BG03_3067 PF07726 ATPase family associated with various cellular activities (AAA) BG03_3067 PF17863 AAA lid domain BG03_3068 PF01882 Protein of unknown function DUF58 BG03_3069 PF13559 Domain of unknown function (DUF4129) BG03_3069 PF11992 Domain of unknown function (DUF3488) BG03_3069 PF01841 Transglutaminase-like superfamily BG03_3070 PF00255 Glutathione peroxidase BG03_3074 PF03109 ABC1 family BG03_3077 PF04542 Sigma-70 region 2 BG03_3077 PF08281 Sigma-70, region 4 BG03_3078 PF00107 Zinc-binding dehydrogenase BG03_3078 PF08240 Alcohol dehydrogenase GroES-like domain BG03_3080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_3081 PF00271 Helicase conserved C-terminal domain BG03_3081 PF00270 DEAD/DEAH box helicase BG03_3083 PF01268 Formate--tetrahydrofolate ligase BG03_3084 PF01209 ubiE/COQ5 methyltransferase family BG03_3089 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG03_3096 PF00583 Acetyltransferase (GNAT) family BG03_310 PF08281 Sigma-70, region 4 BG03_310 PF04542 Sigma-70 region 2 BG03_3102 PF00155 Aminotransferase class I and II BG03_3102 PF00392 Bacterial regulatory proteins, gntR family BG03_3103 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_3103 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_3104 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG03_3109 PF01168 Alanine racemase, N-terminal domain BG03_3109 PF00842 Alanine racemase, C-terminal domain BG03_3112 PF00300 Histidine phosphatase superfamily (branch 1) BG03_3116 PF01145 SPFH domain / Band 7 family BG03_3118 PF07690 Major Facilitator Superfamily BG03_312 PF00056 lactate/malate dehydrogenase, NAD binding domain BG03_312 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG03_3121 PF02557 D-alanyl-D-alanine carboxypeptidase BG03_3123 PF07454 Stage II sporulation protein P (SpoIIP) BG03_3126 PF01588 Putative tRNA binding domain BG03_3127 PF05525 Branched-chain amino acid transport protein BG03_313 PF00082 Subtilase family BG03_313 PF05922 Peptidase inhibitor I9 BG03_313 PF02225 PA domain BG03_313 PF13860 FlgD Ig-like domain BG03_3130 PF00571 CBS domain BG03_3130 PF03471 Transporter associated domain BG03_3130 PF01595 Cyclin M transmembrane N-terminal domain BG03_3131 PF04306 Protein of unknown function (DUF456) BG03_3132 PF13460 NAD(P)H-binding BG03_3135 PF13091 PLD-like domain BG03_3135 PF13396 Phospholipase_D-nuclease N-terminal BG03_3136 PF03061 Thioesterase superfamily BG03_3137 PF09323 Domain of unknown function (DUF1980) BG03_3138 PF03773 Predicted permease BG03_3140 PF01943 Polysaccharide biosynthesis protein BG03_3140 PF14667 Polysaccharide biosynthesis C-terminal domain BG03_3141 PF09335 SNARE associated Golgi protein BG03_3142 PF00293 NUDIX domain BG03_3143 PF08757 CotH kinase protein BG03_3145 PF00300 Histidine phosphatase superfamily (branch 1) BG03_3147 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_3148 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_315 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG03_315 PF02806 Alpha amylase, C-terminal all-beta domain BG03_315 PF00128 Alpha amylase, catalytic domain BG03_3150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BG03_3150 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BG03_3151 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BG03_3152 PF13460 NAD(P)H-binding BG03_3154 PF01297 Zinc-uptake complex component A periplasmic BG03_3154 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BG03_3155 PF00583 Acetyltransferase (GNAT) family BG03_3156 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG03_3156 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG03_3157 PF00248 Aldo/keto reductase family BG03_3158 PF13302 Acetyltransferase (GNAT) domain BG03_3159 PF01593 Flavin containing amine oxidoreductase BG03_316 PF00483 Nucleotidyl transferase BG03_3161 PF00296 Luciferase-like monooxygenase BG03_3164 PF00210 Ferritin-like domain BG03_3168 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_3168 PF00672 HAMP domain BG03_3168 PF02743 Cache domain BG03_3169 PF03193 RsgA GTPase BG03_317 PF00483 Nucleotidyl transferase BG03_3173 PF07690 Major Facilitator Superfamily BG03_3174 PF00248 Aldo/keto reductase family BG03_3175 PF01022 Bacterial regulatory protein, arsR family BG03_3176 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BG03_3176 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BG03_3177 PF00082 Subtilase family BG03_3178 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG03_3178 PF18277 AbrB C-terminal domain BG03_3179 PF02687 FtsX-like permease family BG03_318 PF00534 Glycosyl transferases group 1 BG03_318 PF08323 Starch synthase catalytic domain BG03_3180 PF02540 NAD synthase BG03_3181 PF00293 NUDIX domain BG03_3181 PF13344 Haloacid dehalogenase-like hydrolase BG03_3186 PF01734 Patatin-like phospholipase BG03_3188 PF00392 Bacterial regulatory proteins, gntR family BG03_3188 PF00155 Aminotransferase class I and II BG03_3189 PF01810 LysE type translocator BG03_319 PF00343 Carbohydrate phosphorylase BG03_3190 PF07690 Major Facilitator Superfamily BG03_3191 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG03_3192 PF01261 Xylose isomerase-like TIM barrel BG03_3195 PF13193 AMP-binding enzyme C-terminal domain BG03_3195 PF00501 AMP-binding enzyme BG03_3196 PF04183 IucA / IucC family BG03_3196 PF06276 Ferric iron reductase FhuF-like transporter BG03_3197 PF04183 IucA / IucC family BG03_3197 PF06276 Ferric iron reductase FhuF-like transporter BG03_3198 PF00583 Acetyltransferase (GNAT) family BG03_3199 PF02308 MgtC family BG03_3201 PF01522 Polysaccharide deacetylase BG03_3202 PF16736 Single Cache-like BG03_3202 PF00512 His Kinase A (phospho-acceptor) domain BG03_3202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3202 PF00989 PAS fold BG03_3203 PF00072 Response regulator receiver domain BG03_3203 PF00486 Transcriptional regulatory protein, C terminal BG03_3205 PF03816 Cell envelope-related transcriptional attenuator domain BG03_3208 PF08544 GHMP kinases C terminal BG03_3208 PF00288 GHMP kinases N terminal domain BG03_3209 PF00291 Pyridoxal-phosphate dependent enzyme BG03_3210 PF00742 Homoserine dehydrogenase BG03_3210 PF01842 ACT domain BG03_3210 PF03447 Homoserine dehydrogenase, NAD binding domain BG03_3214 PF01522 Polysaccharide deacetylase BG03_3214 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BG03_3215 PF04439 Streptomycin adenylyltransferase BG03_3217 PF00106 short chain dehydrogenase BG03_3218 PF00005 ABC transporter BG03_322 PF00376 MerR family regulatory protein BG03_322 PF09278 MerR, DNA binding BG03_3222 PF00486 Transcriptional regulatory protein, C terminal BG03_3222 PF00072 Response regulator receiver domain BG03_3223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3223 PF00512 His Kinase A (phospho-acceptor) domain BG03_3224 PF00989 PAS fold BG03_3224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3224 PF16736 Single Cache-like BG03_3224 PF00512 His Kinase A (phospho-acceptor) domain BG03_3225 PF00486 Transcriptional regulatory protein, C terminal BG03_3225 PF00072 Response regulator receiver domain BG03_3226 PF00005 ABC transporter BG03_3226 PF00664 ABC transporter transmembrane region BG03_3228 PF00877 NlpC/P60 family BG03_3228 PF01476 LysM domain BG03_3231 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_3231 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_3232 PF17676 LD-carboxypeptidase C-terminal domain BG03_3232 PF02016 LD-carboxypeptidase N-terminal domain BG03_3235 PF00132 Bacterial transferase hexapeptide (six repeats) BG03_3236 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BG03_3237 PF00535 Glycosyl transferase family 2 BG03_3239 PF00005 ABC transporter BG03_3239 PF00664 ABC transporter transmembrane region BG03_324 PF00313 'Cold-shock' DNA-binding domain BG03_3240 PF00664 ABC transporter transmembrane region BG03_3240 PF00005 ABC transporter BG03_3241 PF02322 Cytochrome bd terminal oxidase subunit II BG03_3242 PF01654 Cytochrome bd terminal oxidase subunit I BG03_3244 PF01047 MarR family BG03_3245 PF14552 Tautomerase enzyme BG03_3247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_3247 PF03466 LysR substrate binding domain BG03_3249 PF02653 Branched-chain amino acid transport system / permease component BG03_325 PF01258 Prokaryotic dksA/traR C4-type zinc finger BG03_3250 PF00005 ABC transporter BG03_3251 PF00005 ABC transporter BG03_3251 PF12399 Branched-chain amino acid ATP-binding cassette transporter BG03_3254 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG03_3254 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG03_3255 PF01575 MaoC like domain BG03_3256 PF00501 AMP-binding enzyme BG03_3256 PF13193 AMP-binding enzyme C-terminal domain BG03_3258 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG03_3258 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG03_3259 PF01593 Flavin containing amine oxidoreductase BG03_326 PF01040 UbiA prenyltransferase family BG03_3260 PF00056 lactate/malate dehydrogenase, NAD binding domain BG03_3260 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG03_3261 PF01594 AI-2E family transporter BG03_3264 PF00881 Nitroreductase family BG03_3265 PF01323 DSBA-like thioredoxin domain BG03_3266 PF02082 Transcriptional regulator BG03_3267 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_3267 PF03466 LysR substrate binding domain BG03_3268 PF00892 EamA-like transporter family BG03_3269 PF07987 Domain of unkown function (DUF1775) BG03_327 PF00425 chorismate binding enzyme BG03_3270 PF05425 Copper resistance protein D BG03_3270 PF04234 CopC domain BG03_3270 PF13115 YtkA-like BG03_3272 PF05525 Branched-chain amino acid transport protein BG03_3273 PF02525 Flavodoxin-like fold BG03_3276 PF00733 Asparagine synthase BG03_3276 PF13537 Glutamine amidotransferase domain BG03_3277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_3277 PF03466 LysR substrate binding domain BG03_328 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG03_328 PF16582 Middle domain of thiamine pyrophosphate BG03_328 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_3285 PF01037 Lrp/AsnC ligand binding domain BG03_3289 PF07731 Multicopper oxidase BG03_3289 PF07732 Multicopper oxidase BG03_3289 PF00394 Multicopper oxidase BG03_329 PF00561 alpha/beta hydrolase fold BG03_3290 PF05195 Aminopeptidase P, N-terminal domain BG03_3290 PF00557 Metallopeptidase family M24 BG03_3294 PF05979 Bacterial protein of unknown function (DUF896) BG03_3295 PF07301 Protein of unknown function (DUF1453) BG03_3297 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG03_3298 PF02885 Glycosyl transferase family, helical bundle domain BG03_3298 PF00591 Glycosyl transferase family, a/b domain BG03_3298 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BG03_3299 PF01773 Na+ dependent nucleoside transporter N-terminus BG03_3299 PF07662 Na+ dependent nucleoside transporter C-terminus BG03_330 PF00378 Enoyl-CoA hydratase/isomerase BG03_3300 PF01791 DeoC/LacD family aldolase BG03_3301 PF04198 Putative sugar-binding domain BG03_3302 PF00440 Bacterial regulatory proteins, tetR family BG03_3304 PF01906 Putative heavy-metal-binding BG03_3306 PF05791 Bacillus haemolytic enterotoxin (HBL) BG03_3307 PF05791 Bacillus haemolytic enterotoxin (HBL) BG03_3309 PF13520 Amino acid permease BG03_331 PF13193 AMP-binding enzyme C-terminal domain BG03_331 PF00501 AMP-binding enzyme BG03_3311 PF08546 Ketopantoate reductase PanE/ApbA C terminal BG03_3311 PF02558 Ketopantoate reductase PanE/ApbA BG03_3314 PF01566 Natural resistance-associated macrophage protein BG03_3316 PF00512 His Kinase A (phospho-acceptor) domain BG03_3316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3317 PF00072 Response regulator receiver domain BG03_3317 PF00486 Transcriptional regulatory protein, C terminal BG03_3318 PF13302 Acetyltransferase (GNAT) domain BG03_3319 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_332 PF13378 Enolase C-terminal domain-like BG03_332 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG03_3320 PF01979 Amidohydrolase family BG03_3323 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BG03_3323 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BG03_3324 PF00072 Response regulator receiver domain BG03_3324 PF04397 LytTr DNA-binding domain BG03_3325 PF00144 Beta-lactamase BG03_3327 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BG03_3328 PF07690 Major Facilitator Superfamily BG03_333 PF00072 Response regulator receiver domain BG03_333 PF00486 Transcriptional regulatory protein, C terminal BG03_3331 PF09587 Bacterial capsule synthesis protein PGA_cap BG03_3333 PF00291 Pyridoxal-phosphate dependent enzyme BG03_3333 PF00585 C-terminal regulatory domain of Threonine dehydratase BG03_3334 PF00920 Dehydratase family BG03_3335 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BG03_3335 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BG03_3337 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG03_3337 PF00205 Thiamine pyrophosphate enzyme, central domain BG03_3337 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_3338 PF01063 Amino-transferase class IV BG03_3339 PF01625 Peptide methionine sulfoxide reductase BG03_334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_334 PF00512 His Kinase A (phospho-acceptor) domain BG03_3343 PF04239 Protein of unknown function (DUF421) BG03_3345 PF01522 Polysaccharide deacetylase BG03_3345 PF00457 Glycosyl hydrolases family 11 BG03_3345 PF03422 Carbohydrate binding module (family 6) BG03_3346 PF00209 Sodium:neurotransmitter symporter family BG03_3347 PF01943 Polysaccharide biosynthesis protein BG03_3347 PF14667 Polysaccharide biosynthesis C-terminal domain BG03_335 PF02557 D-alanyl-D-alanine carboxypeptidase BG03_3350 PF00291 Pyridoxal-phosphate dependent enzyme BG03_3351 PF07690 Major Facilitator Superfamily BG03_3352 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_3353 PF16360 GTP-binding GTPase Middle Region BG03_3353 PF01926 50S ribosome-binding GTPase BG03_3353 PF13167 GTP-binding GTPase N-terminal BG03_3355 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG03_3355 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG03_3357 PF07690 Major Facilitator Superfamily BG03_3358 PF03976 Polyphosphate kinase 2 (PPK2) BG03_3360 PF07690 Major Facilitator Superfamily BG03_3361 PF13302 Acetyltransferase (GNAT) domain BG03_3363 PF00395 S-layer homology domain BG03_3363 PF02368 Bacterial Ig-like domain (group 2) BG03_3364 PF00293 NUDIX domain BG03_3365 PF14158 YndJ-like protein BG03_3366 PF13761 Domain of unknown function (DUF4166) BG03_3368 PF13840 ACT domain BG03_3368 PF00696 Amino acid kinase family BG03_3371 PF03590 Aspartate-ammonia ligase BG03_3373 PF00271 Helicase conserved C-terminal domain BG03_3373 PF00176 SNF2 family N-terminal domain BG03_3373 PF12419 SNF2 Helicase protein BG03_3374 PF00072 Response regulator receiver domain BG03_3374 PF08664 YcbB domain BG03_3375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3376 PF00390 Malic enzyme, N-terminal domain BG03_3376 PF03949 Malic enzyme, NAD binding domain BG03_3377 PF00206 Lyase BG03_3377 PF10415 Fumarase C C-terminus BG03_3378 PF00375 Sodium:dicarboxylate symporter family BG03_3379 PF00696 Amino acid kinase family BG03_338 PF01979 Amidohydrolase family BG03_3380 PF13091 PLD-like domain BG03_3384 PF00005 ABC transporter BG03_3385 PF13185 GAF domain BG03_3385 PF13492 GAF domain BG03_3385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3385 PF07730 Histidine kinase BG03_3386 PF00072 Response regulator receiver domain BG03_3386 PF00196 Bacterial regulatory proteins, luxR family BG03_339 PF03841 L-seryl-tRNA selenium transferase BG03_3391 PF04286 Protein of unknown function (DUF445) BG03_3392 PF00291 Pyridoxal-phosphate dependent enzyme BG03_3396 PF00578 AhpC/TSA family BG03_3397 PF02683 Cytochrome C biogenesis protein transmembrane region BG03_34 PF07739 TipAS antibiotic-recognition domain BG03_34 PF13411 MerR HTH family regulatory protein BG03_340 PF07071 KDGP aldolase BG03_3401 PF03575 Peptidase family S51 BG03_3402 PF01554 MatE BG03_3405 PF10415 Fumarase C C-terminus BG03_3405 PF00206 Lyase BG03_3407 PF00206 Lyase BG03_3407 PF10415 Fumarase C C-terminus BG03_3408 PF00106 short chain dehydrogenase BG03_3409 PF13411 MerR HTH family regulatory protein BG03_3410 PF03553 Na+/H+ antiporter family BG03_3411 PF00535 Glycosyl transferase family 2 BG03_3413 PF03773 Predicted permease BG03_3414 PF07683 Cobalamin synthesis protein cobW C-terminal domain BG03_3414 PF02492 CobW/HypB/UreG, nucleotide-binding domain BG03_3415 PF00892 EamA-like transporter family BG03_3416 PF07729 FCD domain BG03_3416 PF00392 Bacterial regulatory proteins, gntR family BG03_3418 PF16916 Dimerisation domain of Zinc Transporter BG03_3418 PF01545 Cation efflux family BG03_3422 PF00733 Asparagine synthase BG03_3422 PF13537 Glutamine amidotransferase domain BG03_3424 PF01047 MarR family BG03_3426 PF00561 alpha/beta hydrolase fold BG03_3428 PF00300 Histidine phosphatase superfamily (branch 1) BG03_3429 PF13021 Domain of unknown function (DUF3885) BG03_343 PF02447 GntP family permease BG03_3430 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_3430 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_3433 PF10787 Uncharacterised protein from bacillus cereus group BG03_3436 PF00528 Binding-protein-dependent transport system inner membrane component BG03_3438 PF00005 ABC transporter BG03_3438 PF08402 TOBE domain BG03_3444 PF08141 Small acid-soluble spore protein H family BG03_3445 PF04203 Sortase domain BG03_3446 PF04203 Sortase domain BG03_3447 PF17802 Prealbumin-like fold domain BG03_3447 PF05737 Collagen binding domain BG03_3447 PF05738 Cna protein B-type domain BG03_345 PF13977 BetI-type transcriptional repressor, C-terminal BG03_345 PF00440 Bacterial regulatory proteins, tetR family BG03_3451 PF03992 Antibiotic biosynthesis monooxygenase BG03_3459 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG03_3459 PF01411 tRNA synthetases class II (A) BG03_3459 PF02272 DHHA1 domain BG03_3460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG03_3460 PF00460 Flagella basal body rod protein BG03_3461 PF00448 SRP54-type protein, GTPase domain BG03_3462 PF00771 FHIPEP family BG03_3463 PF01312 FlhB HrpN YscU SpaS Family BG03_3465 PF01313 Bacterial export proteins, family 3 BG03_3466 PF00813 FliP family BG03_3468 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG03_3468 PF04509 CheC-like family BG03_3469 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG03_3469 PF02154 Flagellar motor switch protein FliM BG03_347 PF02687 FtsX-like permease family BG03_3471 PF01464 Transglycosylase SLT domain BG03_3472 PF00669 Bacterial flagellin N-terminal helical region BG03_3472 PF00700 Bacterial flagellin C-terminal helical region BG03_3473 PF00669 Bacterial flagellin N-terminal helical region BG03_3473 PF00700 Bacterial flagellin C-terminal helical region BG03_3474 PF12181 DNA binding domain of the motility gene repressor (MogR) BG03_3475 PF01584 CheW-like domain BG03_3475 PF00072 Response regulator receiver domain BG03_3478 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG03_3478 PF00460 Flagella basal body rod protein BG03_3478 PF07559 Flagellar basal body protein FlaE BG03_348 PF00005 ABC transporter BG03_3482 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG03_3482 PF18269 T3SS EscN ATPase C-terminal domain BG03_3482 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG03_3484 PF14841 FliG middle domain BG03_3484 PF01706 FliG C-terminal domain BG03_3484 PF14842 FliG N-terminal domain BG03_3485 PF08345 Flagellar M-ring protein C-terminal BG03_3485 PF01514 Secretory protein of YscJ/FliF family BG03_3486 PF02049 Flagellar hook-basal body complex protein FliE BG03_3487 PF00460 Flagella basal body rod protein BG03_3487 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG03_3488 PF00460 Flagella basal body rod protein BG03_349 PF02687 FtsX-like permease family BG03_3491 PF02465 Flagellar hook-associated protein 2 N-terminus BG03_3491 PF07196 Flagellin hook IN motif BG03_3491 PF07195 Flagellar hook-associated protein 2 C-terminus BG03_3492 PF00669 Bacterial flagellin N-terminal helical region BG03_3492 PF00700 Bacterial flagellin C-terminal helical region BG03_3493 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BG03_3493 PF00460 Flagella basal body rod protein BG03_3497 PF01739 CheR methyltransferase, SAM binding domain BG03_3497 PF03705 CheR methyltransferase, all-alpha domain BG03_350 PF02687 FtsX-like permease family BG03_3500 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BG03_3500 PF04509 CheC-like family BG03_3501 PF01627 Hpt domain BG03_3501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3501 PF02895 Signal transducing histidine kinase, homodimeric domain BG03_3501 PF07194 P2 response regulator binding domain BG03_3501 PF01584 CheW-like domain BG03_3502 PF00072 Response regulator receiver domain BG03_3503 PF13677 Membrane MotB of proton-channel complex MotA/MotB BG03_3503 PF00691 OmpA family BG03_3504 PF01618 MotA/TolQ/ExbB proton channel family BG03_3506 PF17209 Hfq protein BG03_351 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3510 PF07690 Major Facilitator Superfamily BG03_3515 PF00881 Nitroreductase family BG03_3517 PF02698 DUF218 domain BG03_3518 PF04239 Protein of unknown function (DUF421) BG03_352 PF00072 Response regulator receiver domain BG03_352 PF00486 Transcriptional regulatory protein, C terminal BG03_3520 PF06445 GyrI-like small molecule binding domain BG03_3520 PF13411 MerR HTH family regulatory protein BG03_3521 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BG03_3521 PF17770 Ribonuclease J C-terminal domain BG03_3521 PF00753 Metallo-beta-lactamase superfamily BG03_3522 PF00999 Sodium/hydrogen exchanger family BG03_3524 PF00202 Aminotransferase class-III BG03_3525 PF00474 Sodium:solute symporter family BG03_3526 PF04341 Protein of unknown function, DUF485 BG03_3529 PF01810 LysE type translocator BG03_353 PF01022 Bacterial regulatory protein, arsR family BG03_3530 PF08892 YqcI/YcgG family BG03_3531 PF00313 'Cold-shock' DNA-binding domain BG03_3536 PF01263 Aldose 1-epimerase BG03_3537 PF13456 Reverse transcriptase-like BG03_354 PF13630 SdpI/YhfL protein family BG03_354 PF07853 Protein of unknown function (DUF1648) BG03_3541 PF13673 Acetyltransferase (GNAT) domain BG03_3541 PF18014 Acetyltransferase (GNAT) domain BG03_3544 PF00534 Glycosyl transferases group 1 BG03_3544 PF13439 Glycosyltransferase Family 4 BG03_3545 PF00535 Glycosyl transferase family 2 BG03_3548 PF02397 Bacterial sugar transferase BG03_355 PF12833 Helix-turn-helix domain BG03_355 PF06445 GyrI-like small molecule binding domain BG03_3553 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BG03_3553 PF01367 5'-3' exonuclease, C-terminal SAM fold BG03_3554 PF00690 Cation transporter/ATPase, N-terminus BG03_3554 PF00689 Cation transporting ATPase, C-terminus BG03_3556 PF03738 Glutathionylspermidine synthase preATP-grasp BG03_3559 PF00581 Rhodanese-like domain BG03_356 PF00005 ABC transporter BG03_3560 PF10752 Protein of unknown function (DUF2533) BG03_3561 PF00583 Acetyltransferase (GNAT) family BG03_3563 PF00350 Dynamin family BG03_3565 PF04235 Protein of unknown function (DUF418) BG03_3566 PF00860 Permease family BG03_3567 PF00156 Phosphoribosyl transferase domain BG03_3568 PF00557 Metallopeptidase family M24 BG03_357 PF02687 FtsX-like permease family BG03_3570 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BG03_3571 PF13307 Helicase C-terminal domain BG03_3573 PF01170 Putative RNA methylase family UPF0020 BG03_3573 PF02926 THUMP domain BG03_3574 PF05103 DivIVA protein BG03_3575 PF06908 YspA SLOG family BG03_358 PF02311 AraC-like ligand binding domain BG03_358 PF12833 Helix-turn-helix domain BG03_3582 PF10720 Protein of unknown function (DUF2515) BG03_3583 PF03838 Recombination protein U BG03_3584 PF00912 Transglycosylase BG03_3584 PF00905 Penicillin binding protein transpeptidase domain BG03_3586 PF10576 Iron-sulfur binding domain of endonuclease III BG03_3586 PF00633 Helix-hairpin-helix motif BG03_3586 PF00730 HhH-GPD superfamily base excision DNA repair protein BG03_3587 PF07261 Replication initiation and membrane attachment BG03_3588 PF00155 Aminotransferase class I and II BG03_359 PF00398 Ribosomal RNA adenine dimethylase BG03_3590 PF14084 Protein of unknown function (DUF4264) BG03_3591 PF00929 Exonuclease BG03_3591 PF13307 Helicase C-terminal domain BG03_3591 PF04851 Type III restriction enzyme, res subunit BG03_3592 PF02261 Aspartate decarboxylase BG03_3593 PF02569 Pantoate-beta-alanine ligase BG03_3594 PF02548 Ketopantoate hydroxymethyltransferase BG03_3596 PF08279 HTH domain BG03_3596 PF02237 Biotin protein ligase C terminal domain BG03_3596 PF03099 Biotin/lipoate A/B protein ligase family BG03_3597 PF12627 Probable RNA and SrmB- binding site of polymerase A BG03_3597 PF01743 Poly A polymerase head domain BG03_3597 PF13735 tRNA nucleotidyltransferase domain 2 putative BG03_3598 PF00534 Glycosyl transferases group 1 BG03_3598 PF13439 Glycosyltransferase Family 4 BG03_3599 PF02585 GlcNAc-PI de-N-acetylase BG03_360 PF09335 SNARE associated Golgi protein BG03_3600 PF02142 MGS-like domain BG03_3601 PF01113 Dihydrodipicolinate reductase, N-terminus BG03_3601 PF05173 Dihydrodipicolinate reductase, C-terminus BG03_3602 PF03819 MazG nucleotide pyrophosphohydrolase domain BG03_3603 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_3603 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_3605 PF04298 Putative neutral zinc metallopeptidase BG03_3606 PF09577 Sporulation protein YpjB (SpoYpjB) BG03_3608 PF07187 Protein of unknown function (DUF1405) BG03_3609 PF00032 Cytochrome b(C-terminal)/b6/petD BG03_3609 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG03_3610 PF00033 Cytochrome b/b6/petB BG03_3611 PF00355 Rieske [2Fe-2S] domain BG03_3612 PF10673 Protein of unknown function (DUF2487) BG03_3613 PF08858 IDEAL domain BG03_3613 PF08864 UPF0302 domain BG03_3615 PF00155 Aminotransferase class I and II BG03_3616 PF01761 3-dehydroquinate synthase BG03_3617 PF01264 Chorismate synthase BG03_3618 PF00334 Nucleoside diphosphate kinase BG03_3619 PF00348 Polyprenyl synthetase BG03_3620 PF01209 ubiE/COQ5 methyltransferase family BG03_3621 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BG03_3622 PF01227 GTP cyclohydrolase I BG03_3623 PF00216 Bacterial DNA-binding protein BG03_3624 PF09547 Stage IV sporulation protein A (spore_IV_A) BG03_3626 PF10966 Protein of unknown function (DUF2768) BG03_3628 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BG03_3628 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BG03_3629 PF01926 50S ribosome-binding GTPase BG03_3629 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BG03_3631 PF14045 YIEGIA protein BG03_3633 PF14140 YpzI-like protein BG03_3634 PF01070 FMN-dependent dehydrogenase BG03_3635 PF00575 S1 RNA binding domain BG03_3636 PF02224 Cytidylate kinase BG03_3638 PF17763 Glutaminase/Asparaginase C-terminal domain BG03_3638 PF00710 Asparaginase, N-terminal BG03_3643 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BG03_3643 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BG03_3644 PF05389 Negative regulator of genetic competence (MecA) BG03_3645 PF02607 B12 binding domain BG03_3645 PF02310 B12 binding domain BG03_3645 PF13411 MerR HTH family regulatory protein BG03_3646 PF00149 Calcineurin-like phosphoesterase BG03_3648 PF02517 CPBP intramembrane metalloprotease BG03_3649 PF00270 DEAD/DEAH box helicase BG03_3649 PF00271 Helicase conserved C-terminal domain BG03_365 PF00781 Diacylglycerol kinase catalytic domain BG03_3652 PF12822 ECF transporter, substrate-specific component BG03_3654 PF01551 Peptidase family M23 BG03_3655 PF01923 Cobalamin adenosyltransferase BG03_3656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3656 PF00512 His Kinase A (phospho-acceptor) domain BG03_3656 PF00989 PAS fold BG03_3656 PF00672 HAMP domain BG03_3656 PF18698 Histidine kinase sensor domain BG03_3657 PF00486 Transcriptional regulatory protein, C terminal BG03_3657 PF00072 Response regulator receiver domain BG03_3658 PF01578 Cytochrome C assembly protein BG03_3659 PF05140 ResB-like family BG03_3660 PF00578 AhpC/TSA family BG03_3661 PF01479 S4 domain BG03_3661 PF00849 RNA pseudouridylate synthase BG03_3662 PF07670 Nucleoside recognition BG03_3663 PF07670 Nucleoside recognition BG03_3664 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_3664 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_3665 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG03_3665 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG03_3668 PF03706 Lysylphosphatidylglycerol synthase TM region BG03_3668 PF09924 Uncharacterised conserved protein (DUF2156) BG03_3671 PF01048 Phosphorylase superfamily BG03_3672 PF00989 PAS fold BG03_3672 PF16736 Single Cache-like BG03_3672 PF00512 His Kinase A (phospho-acceptor) domain BG03_3672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3673 PF00589 Phage integrase family BG03_3675 PF01904 Protein of unknown function DUF72 BG03_3676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3676 PF00512 His Kinase A (phospho-acceptor) domain BG03_3676 PF00989 PAS fold BG03_3679 PF00912 Transglycosylase BG03_3679 PF00905 Penicillin binding protein transpeptidase domain BG03_3680 PF01865 Protein of unknown function DUF47 BG03_3681 PF01384 Phosphate transporter family BG03_3682 PF01925 Sulfite exporter TauE/SafE BG03_3685 PF00175 Oxidoreductase NAD-binding domain BG03_3685 PF00042 Globin BG03_3685 PF00970 Oxidoreductase FAD-binding domain BG03_3690 PF01209 ubiE/COQ5 methyltransferase family BG03_3692 PF05525 Branched-chain amino acid transport protein BG03_3694 PF00072 Response regulator receiver domain BG03_3694 PF00196 Bacterial regulatory proteins, luxR family BG03_3695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3695 PF00672 HAMP domain BG03_3695 PF07730 Histidine kinase BG03_3696 PF09922 Cell wall-active antibiotics response 4TMS YvqF BG03_3699 PF03553 Na+/H+ antiporter family BG03_37 PF00271 Helicase conserved C-terminal domain BG03_37 PF04851 Type III restriction enzyme, res subunit BG03_37 PF12344 Ultra-violet resistance protein B BG03_37 PF02151 UvrB/uvrC motif BG03_37 PF17757 UvrB interaction domain BG03_3701 PF00375 Sodium:dicarboxylate symporter family BG03_3703 PF00209 Sodium:neurotransmitter symporter family BG03_3705 PF01903 CbiX BG03_3706 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG03_3708 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BG03_3708 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BG03_371 PF00486 Transcriptional regulatory protein, C terminal BG03_371 PF00072 Response regulator receiver domain BG03_3710 PF14306 PUA-like domain BG03_3710 PF01747 ATP-sulfurylase BG03_3711 PF01507 Phosphoadenosine phosphosulfate reductase family BG03_3713 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BG03_3713 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BG03_3715 PF00884 Sulfatase BG03_3716 PF01066 CDP-alcohol phosphatidyltransferase BG03_3717 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BG03_3717 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BG03_3719 PF02811 PHP domain BG03_372 PF00512 His Kinase A (phospho-acceptor) domain BG03_372 PF00672 HAMP domain BG03_372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3720 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BG03_3721 PF01502 Phosphoribosyl-AMP cyclohydrolase BG03_3722 PF00977 Histidine biosynthesis protein BG03_3723 PF00977 Histidine biosynthesis protein BG03_3724 PF00117 Glutamine amidotransferase class-I BG03_3725 PF00475 Imidazoleglycerol-phosphate dehydratase BG03_3726 PF00815 Histidinol dehydrogenase BG03_3727 PF01634 ATP phosphoribosyltransferase BG03_3728 PF13393 Histidyl-tRNA synthetase BG03_3729 PF00694 Aconitase C-terminal domain BG03_373 PF09515 Thiamine transporter protein (Thia_YuaJ) BG03_3730 PF00330 Aconitase family (aconitate hydratase) BG03_3731 PF00180 Isocitrate/isopropylmalate dehydrogenase BG03_3732 PF08502 LeuA allosteric (dimerisation) domain BG03_3732 PF00682 HMGL-like BG03_3733 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BG03_3733 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BG03_3734 PF10369 Small subunit of acetolactate synthase BG03_3734 PF01842 ACT domain BG03_3735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_3735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG03_3735 PF00205 Thiamine pyrophosphate enzyme, central domain BG03_3736 PF01063 Amino-transferase class IV BG03_3738 PF03698 Uncharacterised protein family (UPF0180) BG03_3740 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG03_3742 PF02386 Cation transport protein BG03_3743 PF00375 Sodium:dicarboxylate symporter family BG03_3745 PF01047 MarR family BG03_3748 PF02673 Bacitracin resistance protein BacA BG03_3749 PF01554 MatE BG03_375 PF02421 Ferrous iron transport protein B BG03_375 PF17910 FeoB cytosolic helical domain BG03_375 PF07664 Ferrous iron transport protein B C terminus BG03_375 PF07670 Nucleoside recognition BG03_3753 PF01636 Phosphotransferase enzyme family BG03_3756 PF00258 Flavodoxin BG03_3758 PF01546 Peptidase family M20/M25/M40 BG03_3758 PF07687 Peptidase dimerisation domain BG03_3760 PF00501 AMP-binding enzyme BG03_3760 PF13193 AMP-binding enzyme C-terminal domain BG03_3761 PF03062 MBOAT, membrane-bound O-acyltransferase family BG03_3762 PF00550 Phosphopantetheine attachment site BG03_3763 PF04914 DltD protein BG03_3764 PF03060 Nitronate monooxygenase BG03_3765 PF17676 LD-carboxypeptidase C-terminal domain BG03_3765 PF02016 LD-carboxypeptidase N-terminal domain BG03_3767 PF00857 Isochorismatase family BG03_3769 PF01037 Lrp/AsnC ligand binding domain BG03_3771 PF02517 CPBP intramembrane metalloprotease BG03_3773 PF00005 ABC transporter BG03_3775 PF00005 ABC transporter BG03_3776 PF00392 Bacterial regulatory proteins, gntR family BG03_3777 PF00268 Ribonucleotide reductase, small chain BG03_3778 PF08343 Ribonucleotide reductase N-terminal BG03_3778 PF02867 Ribonucleotide reductase, barrel domain BG03_3778 PF00317 Ribonucleotide reductase, all-alpha domain BG03_3779 PF08343 Ribonucleotide reductase N-terminal BG03_3779 PF02867 Ribonucleotide reductase, barrel domain BG03_3779 PF00317 Ribonucleotide reductase, all-alpha domain BG03_378 PF04012 PspA/IM30 family BG03_3780 PF07972 NrdI Flavodoxin like BG03_3786 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BG03_3787 PF14489 QueF-like protein BG03_3788 PF04055 Radical SAM superfamily BG03_3789 PF01242 6-pyruvoyl tetrahydropterin synthase BG03_3790 PF06508 Queuosine biosynthesis protein QueC BG03_3791 PF13426 PAS domain BG03_3791 PF13188 PAS domain BG03_3791 PF00512 His Kinase A (phospho-acceptor) domain BG03_3791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3791 PF00989 PAS fold BG03_3793 PF12867 DinB superfamily BG03_3795 PF01047 MarR family BG03_3796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3796 PF02743 Cache domain BG03_3796 PF00512 His Kinase A (phospho-acceptor) domain BG03_3797 PF09388 Spo0E like sporulation regulatory protein BG03_3798 PF04748 Divergent polysaccharide deacetylase BG03_38 PF17760 UvrA interaction domain BG03_38 PF00005 ABC transporter BG03_38 PF17755 UvrA DNA-binding domain BG03_3800 PF00596 Class II Aldolase and Adducin N-terminal domain BG03_3801 PF00395 S-layer homology domain BG03_3801 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_3803 PF08220 DeoR-like helix-turn-helix domain BG03_3803 PF00455 DeoR C terminal sensor domain BG03_3805 PF00266 Aminotransferase class-V BG03_3806 PF13419 Haloacid dehalogenase-like hydrolase BG03_3807 PF00528 Binding-protein-dependent transport system inner membrane component BG03_3808 PF00005 ABC transporter BG03_3808 PF08402 TOBE domain BG03_3812 PF02386 Cation transport protein BG03_3814 PF00561 alpha/beta hydrolase fold BG03_3819 PF01575 MaoC like domain BG03_3820 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG03_3821 PF02386 Cation transport protein BG03_3822 PF03741 Integral membrane protein TerC family BG03_3823 PF01226 Formate/nitrite transporter BG03_3825 PF06750 Bacterial Peptidase A24 N-terminal domain BG03_3825 PF01478 Type IV leader peptidase family BG03_3826 PF02589 LUD domain BG03_3827 PF02589 LUD domain BG03_3827 PF13183 4Fe-4S dicluster domain BG03_3827 PF11870 Domain of unknown function (DUF3390) BG03_3828 PF02754 Cysteine-rich domain BG03_3829 PF07729 FCD domain BG03_3829 PF00392 Bacterial regulatory proteins, gntR family BG03_383 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_383 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_3830 PF00672 HAMP domain BG03_3830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_3830 PF18698 Histidine kinase sensor domain BG03_3830 PF00512 His Kinase A (phospho-acceptor) domain BG03_3830 PF00989 PAS fold BG03_3831 PF00072 Response regulator receiver domain BG03_3831 PF00486 Transcriptional regulatory protein, C terminal BG03_3833 PF17853 GGDEF-like domain BG03_3833 PF05651 Putative sugar diacid recognition BG03_3833 PF13556 PucR C-terminal helix-turn-helix domain BG03_3834 PF02913 FAD linked oxidases, C-terminal domain BG03_3834 PF01565 FAD binding domain BG03_3835 PF13183 4Fe-4S dicluster domain BG03_3835 PF02754 Cysteine-rich domain BG03_3836 PF00188 Cysteine-rich secretory protein family BG03_3838 PF00849 RNA pseudouridylate synthase BG03_3838 PF01479 S4 domain BG03_3840 PF03176 MMPL family BG03_3841 PF01569 PAP2 superfamily BG03_3842 PF13416 Bacterial extracellular solute-binding protein BG03_3843 PF00528 Binding-protein-dependent transport system inner membrane component BG03_3844 PF00528 Binding-protein-dependent transport system inner membrane component BG03_3845 PF00005 ABC transporter BG03_3845 PF08402 TOBE domain BG03_3846 PF00171 Aldehyde dehydrogenase family BG03_3848 PF05547 Immune inhibitor A peptidase M6 BG03_3850 PF01381 Helix-turn-helix BG03_3850 PF08671 Anti-repressor SinI BG03_3851 PF12389 Camelysin metallo-endopeptidase BG03_3853 PF12389 Camelysin metallo-endopeptidase BG03_3855 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_3855 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_3864 PF01381 Helix-turn-helix BG03_3865 PF00676 Dehydrogenase E1 component BG03_3865 PF16870 2-oxoglutarate dehydrogenase C-terminal BG03_3865 PF02779 Transketolase, pyrimidine binding domain BG03_3866 PF00364 Biotin-requiring enzyme BG03_3866 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BG03_3866 PF02817 e3 binding domain BG03_387 PF10676 Spore germination protein gerPA/gerPF BG03_3873 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_3873 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG03_3875 PF13240 zinc-ribbon domain BG03_3878 PF10042 Uncharacterized conserved protein (DUF2278) BG03_3879 PF02652 L-lactate permease BG03_388 PF02322 Cytochrome bd terminal oxidase subunit II BG03_3881 PF00290 Tryptophan synthase alpha chain BG03_3882 PF00291 Pyridoxal-phosphate dependent enzyme BG03_3883 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BG03_3884 PF00218 Indole-3-glycerol phosphate synthase BG03_3885 PF02885 Glycosyl transferase family, helical bundle domain BG03_3885 PF00591 Glycosyl transferase family, a/b domain BG03_3886 PF00117 Glutamine amidotransferase class-I BG03_3886 PF02885 Glycosyl transferase family, helical bundle domain BG03_3886 PF00591 Glycosyl transferase family, a/b domain BG03_3888 PF00474 Sodium:solute symporter family BG03_3889 PF02368 Bacterial Ig-like domain (group 2) BG03_389 PF01654 Cytochrome bd terminal oxidase subunit I BG03_3893 PF00756 Putative esterase BG03_3895 PF13673 Acetyltransferase (GNAT) domain BG03_3896 PF00580 UvrD/REP helicase N-terminal domain BG03_3896 PF13361 UvrD-like helicase C-terminal domain BG03_3899 PF07098 Protein of unknown function (DUF1360) BG03_390 PF01809 Putative membrane protein insertion efficiency factor BG03_3903 PF04321 RmlD substrate binding domain BG03_3904 PF16363 GDP-mannose 4,6 dehydratase BG03_3905 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BG03_3906 PF00483 Nucleotidyl transferase BG03_391 PF00484 Carbonic anhydrase BG03_3910 PF00535 Glycosyl transferase family 2 BG03_3910 PF13181 Tetratricopeptide repeat BG03_3912 PF05711 Macrocin-O-methyltransferase (TylF) BG03_3913 PF08241 Methyltransferase domain BG03_3914 PF00535 Glycosyl transferase family 2 BG03_3915 PF01098 Cell cycle protein BG03_3916 PF00149 Calcineurin-like phosphoesterase BG03_3919 PF00849 RNA pseudouridylate synthase BG03_392 PF02664 S-Ribosylhomocysteinase (LuxS) BG03_3920 PF01513 ATP-NAD kinase BG03_3921 PF04607 Region found in RelA / SpoT proteins BG03_3923 PF01928 CYTH domain BG03_3924 PF01152 Bacterial-like globin BG03_3927 PF08439 Oligopeptidase F BG03_3927 PF01432 Peptidase family M3 BG03_3929 PF13396 Phospholipase_D-nuclease N-terminal BG03_3929 PF13091 PLD-like domain BG03_3930 PF05389 Negative regulator of genetic competence (MecA) BG03_3931 PF03741 Integral membrane protein TerC family BG03_3932 PF03960 ArsC family BG03_3934 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_3935 PF01554 MatE BG03_3936 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_3936 PF00005 ABC transporter BG03_3937 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_3937 PF00005 ABC transporter BG03_3938 PF12911 N-terminal TM domain of oligopeptide transport permease C BG03_3938 PF00528 Binding-protein-dependent transport system inner membrane component BG03_3939 PF00528 Binding-protein-dependent transport system inner membrane component BG03_3940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_3942 PF00579 tRNA synthetases class I (W and Y) BG03_3943 PF12227 Protein of unknown function (DUF3603) BG03_3944 PF10026 Predicted Zn-dependent protease (DUF2268) BG03_3945 PF02801 Beta-ketoacyl synthase, C-terminal domain BG03_3945 PF00109 Beta-ketoacyl synthase, N-terminal domain BG03_3946 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BG03_3946 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BG03_3947 PF10815 ComZ BG03_3952 PF00004 ATPase family associated with various cellular activities (AAA) BG03_3952 PF07724 AAA domain (Cdc48 subfamily) BG03_3952 PF02861 Clp amino terminal domain, pathogenicity island component BG03_3952 PF10431 C-terminal, D2-small domain, of ClpB protein BG03_3952 PF17871 AAA lid domain BG03_3953 PF14168 YjzC-like protein BG03_3956 PF12758 Protein of unknown function (DUF3813) BG03_3957 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_3957 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_3959 PF00639 PPIC-type PPIASE domain BG03_3962 PF05593 RHS Repeat BG03_3965 PF05593 RHS Repeat BG03_3966 PF13509 S1 domain BG03_3966 PF17783 CvfB-like winged helix domain BG03_3967 PF04461 Protein of unknown function (DUF520) BG03_3970 PF00128 Alpha amylase, catalytic domain BG03_3971 PF00909 Ammonium Transporter Family BG03_3972 PF06628 Catalase-related immune-responsive BG03_3972 PF00199 Catalase BG03_3974 PF00733 Asparagine synthase BG03_3974 PF13537 Glutamine amidotransferase domain BG03_3976 PF07457 Protein of unknown function (DUF1516) BG03_3977 PF00202 Aminotransferase class-III BG03_3979 PF01557 Fumarylacetoacetate (FAA) hydrolase family BG03_3980 PF09388 Spo0E like sporulation regulatory protein BG03_3981 PF10676 Spore germination protein gerPA/gerPF BG03_3982 PF10803 Spore germination GerPB BG03_3983 PF10737 Spore germination protein GerPC BG03_3985 PF10970 Spore germination protein GerPE BG03_3986 PF10676 Spore germination protein gerPA/gerPF BG03_3988 PF00580 UvrD/REP helicase N-terminal domain BG03_3988 PF13361 UvrD-like helicase C-terminal domain BG03_3988 PF12705 PD-(D/E)XK nuclease superfamily BG03_3989 PF12705 PD-(D/E)XK nuclease superfamily BG03_3989 PF13361 UvrD-like helicase C-terminal domain BG03_3990 PF10502 Signal peptidase, peptidase S26 BG03_3991 PF09335 SNARE associated Golgi protein BG03_3993 PF06338 ComK protein BG03_3996 PF00313 'Cold-shock' DNA-binding domain BG03_3998 PF00463 Isocitrate lyase family BG03_3999 PF01274 Malate synthase BG03_4 PF00953 Glycosyl transferase family 4 BG03_40 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BG03_400 PF00293 NUDIX domain BG03_4000 PF00395 S-layer homology domain BG03_4002 PF03424 Carbohydrate binding domain (family 17/28) BG03_4002 PF00150 Cellulase (glycosyl hydrolase family 5) BG03_4002 PF00395 S-layer homology domain BG03_4003 PF00892 EamA-like transporter family BG03_4004 PF01435 Peptidase family M48 BG03_4004 PF16491 CAAX prenyl protease N-terminal, five membrane helices BG03_4009 PF00072 Response regulator receiver domain BG03_4009 PF00486 Transcriptional regulatory protein, C terminal BG03_4010 PF00512 His Kinase A (phospho-acceptor) domain BG03_4010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4013 PF06445 GyrI-like small molecule binding domain BG03_4013 PF12833 Helix-turn-helix domain BG03_4014 PF08281 Sigma-70, region 4 BG03_4014 PF04542 Sigma-70 region 2 BG03_4016 PF07690 Major Facilitator Superfamily BG03_4017 PF01638 HxlR-like helix-turn-helix BG03_4018 PF01966 HD domain BG03_4019 PF00149 Calcineurin-like phosphoesterase BG03_402 PF13419 Haloacid dehalogenase-like hydrolase BG03_4020 PF12146 Serine aminopeptidase, S33 BG03_4022 PF07968 Leukocidin/Hemolysin toxin family BG03_4024 PF00501 AMP-binding enzyme BG03_4024 PF13193 AMP-binding enzyme C-terminal domain BG03_4026 PF10437 Bacterial lipoate protein ligase C-terminus BG03_4026 PF03099 Biotin/lipoate A/B protein ligase family BG03_4027 PF12706 Beta-lactamase superfamily domain BG03_4028 PF14149 YhfH-like protein BG03_4029 PF00356 Bacterial regulatory proteins, lacI family BG03_4030 PF13302 Acetyltransferase (GNAT) domain BG03_4034 PF17932 Tetracyclin repressor-like, C-terminal domain BG03_4034 PF00440 Bacterial regulatory proteins, tetR family BG03_4041 PF01208 Uroporphyrinogen decarboxylase (URO-D) BG03_4042 PF00912 Transglycosylase BG03_4042 PF00905 Penicillin binding protein transpeptidase domain BG03_4043 PF03992 Antibiotic biosynthesis monooxygenase BG03_4044 PF03703 Bacterial PH domain BG03_4045 PF03703 Bacterial PH domain BG03_4049 PF03703 Bacterial PH domain BG03_405 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4050 PF03703 Bacterial PH domain BG03_4052 PF17934 Tetracyclin repressor-like, C-terminal domain BG03_4052 PF00440 Bacterial regulatory proteins, tetR family BG03_4054 PF12787 EcsC protein family BG03_4055 PF05975 Bacterial ABC transporter protein EcsB BG03_4056 PF00005 ABC transporter BG03_4057 PF01230 HIT domain BG03_4058 PF12732 YtxH-like protein BG03_4059 PF01047 MarR family BG03_406 PF00005 ABC transporter BG03_4063 PF13538 UvrD-like helicase C-terminal domain BG03_4067 PF04542 Sigma-70 region 2 BG03_4067 PF08281 Sigma-70, region 4 BG03_4069 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BG03_4069 PF01266 FAD dependent oxidoreductase BG03_4070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG03_4070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG03_4071 PF00230 Major intrinsic protein BG03_4072 PF04309 Glycerol-3-phosphate responsive antiterminator BG03_4075 PF08386 TAP-like protein BG03_4075 PF00561 alpha/beta hydrolase fold BG03_4077 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_4078 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_4079 PF00144 Beta-lactamase BG03_4080 PF01336 OB-fold nucleic acid binding domain BG03_4080 PF01966 HD domain BG03_4081 PF13514 AAA domain BG03_4082 PF00149 Calcineurin-like phosphoesterase BG03_4085 PF11121 Protein of unknown function (DUF2639) BG03_4088 PF08240 Alcohol dehydrogenase GroES-like domain BG03_4088 PF00107 Zinc-binding dehydrogenase BG03_4090 PF07729 FCD domain BG03_4090 PF00392 Bacterial regulatory proteins, gntR family BG03_4091 PF07690 Major Facilitator Superfamily BG03_4094 PF01906 Putative heavy-metal-binding BG03_4099 PF00512 His Kinase A (phospho-acceptor) domain BG03_4099 PF01627 Hpt domain BG03_4099 PF00072 Response regulator receiver domain BG03_4099 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BG03_4099 PF00672 HAMP domain BG03_4099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_41 PF02603 HPr Serine kinase N terminus BG03_41 PF07475 HPr Serine kinase C-terminal domain BG03_410 PF00884 Sulfatase BG03_4100 PF03705 CheR methyltransferase, all-alpha domain BG03_4100 PF01739 CheR methyltransferase, SAM binding domain BG03_4101 PF13426 PAS domain BG03_4101 PF07228 Stage II sporulation protein E (SpoIIE) BG03_4103 PF04545 Sigma-70, region 4 BG03_4103 PF04539 Sigma-70 region 3 BG03_4103 PF04542 Sigma-70 region 2 BG03_4104 PF13581 Histidine kinase-like ATPase domain BG03_4105 PF01740 STAS domain BG03_4109 PF11181 Heat induced stress protein YflT BG03_411 PF08386 TAP-like protein BG03_411 PF00561 alpha/beta hydrolase fold BG03_4112 PF00395 S-layer homology domain BG03_4112 PF00150 Cellulase (glycosyl hydrolase family 5) BG03_4112 PF03424 Carbohydrate binding domain (family 17/28) BG03_4116 PF02368 Bacterial Ig-like domain (group 2) BG03_4116 PF00395 S-layer homology domain BG03_4118 PF01966 HD domain BG03_4118 PF00672 HAMP domain BG03_412 PF00512 His Kinase A (phospho-acceptor) domain BG03_412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_412 PF00989 PAS fold BG03_412 PF08447 PAS fold BG03_4121 PF18801 response regulator aspartate phosphatase H, N terminal BG03_4123 PF02733 Dak1 domain BG03_4125 PF02733 Dak1 domain BG03_4129 PF01066 CDP-alcohol phosphatidyltransferase BG03_413 PF13426 PAS domain BG03_413 PF13188 PAS domain BG03_413 PF00989 PAS fold BG03_413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_413 PF00512 His Kinase A (phospho-acceptor) domain BG03_4140 PF07690 Major Facilitator Superfamily BG03_4143 PF03606 C4-dicarboxylate anaerobic carrier BG03_4144 PF07722 Peptidase C26 BG03_4145 PF02954 Bacterial regulatory protein, Fis family BG03_4145 PF00158 Sigma-54 interaction domain BG03_4145 PF13426 PAS domain BG03_4147 PF01925 Sulfite exporter TauE/SafE BG03_4149 PF03796 DnaB-like helicase C terminal domain BG03_4149 PF00772 DnaB-like helicase N terminal domain BG03_4152 PF03796 DnaB-like helicase C terminal domain BG03_4152 PF00772 DnaB-like helicase N terminal domain BG03_4155 PF00448 SRP54-type protein, GTPase domain BG03_4155 PF02881 SRP54-type protein, helical bundle domain BG03_4160 PF02384 N-6 DNA Methylase BG03_4160 PF12161 HsdM N-terminal domain BG03_4169 PF03401 Tripartite tricarboxylate transporter family receptor BG03_4170 PF00072 Response regulator receiver domain BG03_4170 PF08279 HTH domain BG03_4170 PF12431 Transcriptional regulator BG03_4171 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG03_4171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4172 PF00083 Sugar (and other) transporter BG03_4177 PF08924 Domain of unknown function (DUF1906) BG03_4177 PF01471 Putative peptidoglycan binding domain BG03_4178 PF01381 Helix-turn-helix BG03_4182 PF01510 N-acetylmuramoyl-L-alanine amidase BG03_4186 PF08924 Domain of unknown function (DUF1906) BG03_4186 PF01471 Putative peptidoglycan binding domain BG03_4192 PF03796 DnaB-like helicase C terminal domain BG03_4192 PF00772 DnaB-like helicase N terminal domain BG03_4198 PF02423 Ornithine cyclodeaminase/mu-crystallin family BG03_4199 PF05544 Proline racemase BG03_42 PF01790 Prolipoprotein diacylglyceryl transferase BG03_4200 PF11121 Protein of unknown function (DUF2639) BG03_4202 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_4202 PF00395 S-layer homology domain BG03_4203 PF05343 M42 glutamyl aminopeptidase BG03_4207 PF00378 Enoyl-CoA hydratase/isomerase BG03_4209 PF03062 MBOAT, membrane-bound O-acyltransferase family BG03_4211 PF00395 S-layer homology domain BG03_4212 PF00395 S-layer homology domain BG03_4212 PF02368 Bacterial Ig-like domain (group 2) BG03_4212 PF13205 Bacterial Ig-like domain BG03_4214 PF01943 Polysaccharide biosynthesis protein BG03_4214 PF14667 Polysaccharide biosynthesis C-terminal domain BG03_4215 PF07516 SecA Wing and Scaffold domain BG03_4215 PF01043 SecA preprotein cross-linking domain BG03_4215 PF07517 SecA DEAD-like domain BG03_4220 PF01740 STAS domain BG03_4220 PF00916 Sulfate permease family BG03_4222 PF13411 MerR HTH family regulatory protein BG03_4222 PF06445 GyrI-like small molecule binding domain BG03_4224 PF09335 SNARE associated Golgi protein BG03_4225 PF05737 Collagen binding domain BG03_4225 PF05738 Cna protein B-type domain BG03_4225 PF17802 Prealbumin-like fold domain BG03_4226 PF00501 AMP-binding enzyme BG03_4226 PF13193 AMP-binding enzyme C-terminal domain BG03_4227 PF04055 Radical SAM superfamily BG03_4228 PF01471 Putative peptidoglycan binding domain BG03_4228 PF01510 N-acetylmuramoyl-L-alanine amidase BG03_4229 PF00746 LPXTG cell wall anchor motif BG03_4229 PF10425 C-terminus of bacterial fibrinogen-binding adhesin BG03_4229 PF17961 Bacterial Ig domain BG03_4229 PF17210 SdrD B-like domain BG03_4229 PF04650 YSIRK type signal peptide BG03_4231 PF02245 Methylpurine-DNA glycosylase (MPG) BG03_4233 PF03306 Alpha-acetolactate decarboxylase BG03_4234 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG03_4234 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_4234 PF00205 Thiamine pyrophosphate enzyme, central domain BG03_4237 PF06133 Control of competence regulator ComK, YlbF/YmcA BG03_4238 PF04286 Protein of unknown function (DUF445) BG03_4240 PF14398 YheC/D like ATP-grasp BG03_4242 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG03_4243 PF00005 ABC transporter BG03_4244 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4245 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG03_4246 PF00005 ABC transporter BG03_4246 PF00664 ABC transporter transmembrane region BG03_4247 PF00664 ABC transporter transmembrane region BG03_4247 PF00005 ABC transporter BG03_4248 PF00171 Aldehyde dehydrogenase family BG03_425 PF01293 Phosphoenolpyruvate carboxykinase BG03_4250 PF01177 Asp/Glu/Hydantoin racemase BG03_4251 PF13520 Amino acid permease BG03_4253 PF01965 DJ-1/PfpI family BG03_4256 PF02525 Flavodoxin-like fold BG03_4258 PF01638 HxlR-like helix-turn-helix BG03_426 PF02773 S-adenosylmethionine synthetase, C-terminal domain BG03_426 PF00438 S-adenosylmethionine synthetase, N-terminal domain BG03_426 PF02772 S-adenosylmethionine synthetase, central domain BG03_4260 PF02687 FtsX-like permease family BG03_4261 PF00005 ABC transporter BG03_4262 PF02687 FtsX-like permease family BG03_4262 PF12704 MacB-like periplasmic core domain BG03_4263 PF00005 ABC transporter BG03_4265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4265 PF00512 His Kinase A (phospho-acceptor) domain BG03_4266 PF00072 Response regulator receiver domain BG03_4266 PF00486 Transcriptional regulatory protein, C terminal BG03_4268 PF07690 Major Facilitator Superfamily BG03_4269 PF17934 Tetracyclin repressor-like, C-terminal domain BG03_4269 PF00440 Bacterial regulatory proteins, tetR family BG03_4270 PF00893 Small Multidrug Resistance protein BG03_4271 PF00893 Small Multidrug Resistance protein BG03_4272 PF13411 MerR HTH family regulatory protein BG03_4273 PF00561 alpha/beta hydrolase fold BG03_4273 PF00106 short chain dehydrogenase BG03_4275 PF01037 Lrp/AsnC ligand binding domain BG03_4276 PF00892 EamA-like transporter family BG03_4279 PF07681 DoxX BG03_428 PF00994 Probable molybdopterin binding domain BG03_4281 PF02378 Phosphotransferase system, EIIC BG03_4281 PF00367 phosphotransferase system, EIIB BG03_4282 PF13580 SIS domain BG03_4283 PF01418 Helix-turn-helix domain, rpiR family BG03_4283 PF01380 SIS domain BG03_4285 PF00999 Sodium/hydrogen exchanger family BG03_4286 PF13520 Amino acid permease BG03_429 PF12804 MobA-like NTP transferase domain BG03_4293 PF09335 SNARE associated Golgi protein BG03_4295 PF02735 Ku70/Ku80 beta-barrel domain BG03_4298 PF11007 Spore coat associated protein JA (CotJA) BG03_4299 PF12652 CotJB protein BG03_43 PF13419 Haloacid dehalogenase-like hydrolase BG03_430 PF13439 Glycosyltransferase Family 4 BG03_430 PF00534 Glycosyl transferases group 1 BG03_4300 PF05067 Manganese containing catalase BG03_4301 PF05525 Branched-chain amino acid transport protein BG03_4302 PF02687 FtsX-like permease family BG03_4307 PF00005 ABC transporter BG03_4308 PF02687 FtsX-like permease family BG03_4308 PF12704 MacB-like periplasmic core domain BG03_4309 PF01476 LysM domain BG03_4309 PF06725 3D domain BG03_431 PF01569 PAP2 superfamily BG03_4312 PF02378 Phosphotransferase system, EIIC BG03_4313 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG03_4314 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG03_4315 PF05043 Mga helix-turn-helix domain BG03_4315 PF00874 PRD domain BG03_4315 PF08279 HTH domain BG03_4315 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG03_4317 PF07690 Major Facilitator Superfamily BG03_4318 PF02690 Na+/Pi-cotransporter BG03_4319 PF08240 Alcohol dehydrogenase GroES-like domain BG03_4319 PF00107 Zinc-binding dehydrogenase BG03_432 PF00132 Bacterial transferase hexapeptide (six repeats) BG03_4320 PF03816 Cell envelope-related transcriptional attenuator domain BG03_4322 PF01925 Sulfite exporter TauE/SafE BG03_4323 PF13686 DsrE/DsrF/DrsH-like family BG03_4325 PF00581 Rhodanese-like domain BG03_4325 PF01206 Sulfurtransferase TusA BG03_4327 PF01206 Sulfurtransferase TusA BG03_4328 PF01206 Sulfurtransferase TusA BG03_4329 PF00753 Metallo-beta-lactamase superfamily BG03_4329 PF00581 Rhodanese-like domain BG03_433 PF12146 Serine aminopeptidase, S33 BG03_4330 PF01206 Sulfurtransferase TusA BG03_4330 PF00581 Rhodanese-like domain BG03_4331 PF02583 Metal-sensitive transcriptional repressor BG03_4332 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BG03_4332 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_4334 PF00089 Trypsin BG03_4336 PF04293 SpoVR like protein BG03_4337 PF00881 Nitroreductase family BG03_4339 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_434 PF10776 Protein of unknown function (DUF2600) BG03_4341 PF03845 Spore germination protein BG03_4343 PF14148 YhdB-like protein BG03_4344 PF02600 Disulfide bond formation protein DsbB BG03_4345 PF00085 Thioredoxin BG03_4348 PF17969 L,D-transpeptidase C-terminal domain BG03_4348 PF03734 L,D-transpeptidase catalytic domain BG03_4350 PF00860 Permease family BG03_4352 PF13333 Integrase core domain BG03_4352 PF00665 Integrase core domain BG03_4352 PF13276 HTH-like domain BG03_4354 PF00005 ABC transporter BG03_4359 PF01047 MarR family BG03_4360 PF07690 Major Facilitator Superfamily BG03_4361 PF02702 Osmosensitive K+ channel His kinase sensor domain BG03_4362 PF02669 K+-transporting ATPase, c chain BG03_4364 PF03814 Potassium-transporting ATPase A subunit BG03_4368 PF08543 Phosphomethylpyrimidine kinase BG03_4369 PF00899 ThiF family BG03_4370 PF05690 Thiazole biosynthesis protein ThiG BG03_4371 PF02597 ThiS family BG03_4372 PF01266 FAD dependent oxidoreductase BG03_4373 PF02581 Thiamine monophosphate synthase BG03_4374 PF09084 NMT1/THI5 like BG03_4375 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4376 PF00005 ABC transporter BG03_4377 PF03070 TENA/THI-4/PQQC family BG03_4378 PF08239 Bacterial SH3 domain BG03_4378 PF00246 Zinc carboxypeptidase BG03_4381 PF00571 CBS domain BG03_439 PF01177 Asp/Glu/Hydantoin racemase BG03_44 PF14602 Hexapeptide repeat of succinyl-transferase BG03_4406 PF00873 AcrB/AcrD/AcrF family BG03_4409 PF00528 Binding-protein-dependent transport system inner membrane component BG03_441 PF13732 Domain of unknown function (DUF4162) BG03_441 PF00005 ABC transporter BG03_4410 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4411 PF12849 PBP superfamily domain BG03_4412 PF07664 Ferrous iron transport protein B C terminus BG03_4412 PF04023 FeoA domain BG03_4412 PF17910 FeoB cytosolic helical domain BG03_4412 PF07670 Nucleoside recognition BG03_4412 PF02421 Ferrous iron transport protein B BG03_4413 PF07670 Nucleoside recognition BG03_4413 PF02421 Ferrous iron transport protein B BG03_4413 PF07664 Ferrous iron transport protein B C terminus BG03_4413 PF17910 FeoB cytosolic helical domain BG03_4414 PF17910 FeoB cytosolic helical domain BG03_4414 PF02421 Ferrous iron transport protein B BG03_4414 PF07670 Nucleoside recognition BG03_4414 PF07664 Ferrous iron transport protein B C terminus BG03_4415 PF05504 Spore germination B3/ GerAC like, C-terminal BG03_4416 PF03845 Spore germination protein BG03_4417 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_4418 PF00474 Sodium:solute symporter family BG03_4419 PF11755 Protein of unknown function (DUF3311) BG03_442 PF06962 Putative rRNA methylase BG03_4420 PF01546 Peptidase family M20/M25/M40 BG03_4420 PF07687 Peptidase dimerisation domain BG03_4421 PF13529 Peptidase_C39 like family BG03_4422 PF00324 Amino acid permease BG03_4423 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BG03_4424 PF00115 Cytochrome C and Quinol oxidase polypeptide I BG03_4425 PF00510 Cytochrome c oxidase subunit III BG03_4427 PF02254 TrkA-N domain BG03_4427 PF02080 TrkA-C domain BG03_4427 PF00999 Sodium/hydrogen exchanger family BG03_4428 PF13673 Acetyltransferase (GNAT) domain BG03_443 PF04055 Radical SAM superfamily BG03_443 PF16199 Radical_SAM C-terminal domain BG03_4431 PF00860 Permease family BG03_4432 PF00324 Amino acid permease BG03_4435 PF05525 Branched-chain amino acid transport protein BG03_4436 PF00854 POT family BG03_4437 PF04203 Sortase domain BG03_4439 PF01381 Helix-turn-helix BG03_444 PF10732 Protein of unknown function (DUF2524) BG03_4440 PF06725 3D domain BG03_4440 PF07501 G5 domain BG03_4440 PF03990 G5-linked-Ubiquitin-like domain BG03_4441 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_4441 PF00672 HAMP domain BG03_4441 PF02743 Cache domain BG03_4442 PF02673 Bacitracin resistance protein BacA BG03_4447 PF03372 Endonuclease/Exonuclease/phosphatase family BG03_4448 PF00882 Zinc dependent phospholipase C BG03_4450 PF00107 Zinc-binding dehydrogenase BG03_4450 PF08240 Alcohol dehydrogenase GroES-like domain BG03_4452 PF05547 Immune inhibitor A peptidase M6 BG03_4453 PF00923 Transaldolase/Fructose-6-phosphate aldolase BG03_4454 PF13407 Periplasmic binding protein domain BG03_4455 PF02653 Branched-chain amino acid transport system / permease component BG03_4456 PF00005 ABC transporter BG03_4457 PF05025 RbsD / FucU transport protein family BG03_4458 PF00294 pfkB family carbohydrate kinase BG03_4459 PF00356 Bacterial regulatory proteins, lacI family BG03_446 PF07786 Protein of unknown function (DUF1624) BG03_446 PF04235 Protein of unknown function (DUF418) BG03_4460 PF07690 Major Facilitator Superfamily BG03_4461 PF01047 MarR family BG03_4462 PF07690 Major Facilitator Superfamily BG03_4463 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_4463 PF00005 ABC transporter BG03_4464 PF00005 ABC transporter BG03_4464 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_4465 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4466 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4467 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_4469 PF00582 Universal stress protein family BG03_447 PF00005 ABC transporter BG03_4470 PF01740 STAS domain BG03_4470 PF00916 Sulfate permease family BG03_4472 PF00486 Transcriptional regulatory protein, C terminal BG03_4472 PF00072 Response regulator receiver domain BG03_4473 PF00989 PAS fold BG03_4473 PF00512 His Kinase A (phospho-acceptor) domain BG03_4473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4473 PF00672 HAMP domain BG03_4473 PF18698 Histidine kinase sensor domain BG03_4474 PF01872 RibD C-terminal domain BG03_4475 PF08279 HTH domain BG03_4475 PF13280 WYL domain BG03_4480 PF00324 Amino acid permease BG03_4481 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4482 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4483 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG03_4484 PF00005 ABC transporter BG03_4485 PF01235 Sodium:alanine symporter family BG03_4486 PF01636 Phosphotransferase enzyme family BG03_4487 PF12389 Camelysin metallo-endopeptidase BG03_4488 PF13860 FlgD Ig-like domain BG03_4488 PF05922 Peptidase inhibitor I9 BG03_4488 PF02225 PA domain BG03_4488 PF00082 Subtilase family BG03_4489 PF00072 Response regulator receiver domain BG03_4489 PF00196 Bacterial regulatory proteins, luxR family BG03_449 PF00589 Phage integrase family BG03_4490 PF07730 Histidine kinase BG03_4490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4490 PF13492 GAF domain BG03_4491 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_4494 PF00128 Alpha amylase, catalytic domain BG03_4494 PF16657 Maltogenic Amylase, C-terminal domain BG03_4495 PF00367 phosphotransferase system, EIIB BG03_4495 PF02378 Phosphotransferase system, EIIC BG03_4496 PF07702 UTRA domain BG03_4496 PF00392 Bacterial regulatory proteins, gntR family BG03_4497 PF13520 Amino acid permease BG03_4498 PF03707 Bacterial signalling protein N terminal repeat BG03_4498 PF00990 Diguanylate cyclase, GGDEF domain BG03_4498 PF00563 EAL domain BG03_450 PF02080 TrkA-C domain BG03_4501 PF13091 PLD-like domain BG03_4501 PF13396 Phospholipase_D-nuclease N-terminal BG03_4502 PF07728 AAA domain (dynein-related subfamily) BG03_4503 PF00092 von Willebrand factor type A domain BG03_4504 PF13344 Haloacid dehalogenase-like hydrolase BG03_4504 PF00293 NUDIX domain BG03_4505 PF00156 Phosphoribosyl transferase domain BG03_4506 PF01370 NAD dependent epimerase/dehydratase family BG03_4507 PF00155 Aminotransferase class I and II BG03_4508 PF08241 Methyltransferase domain BG03_4509 PF00005 ABC transporter BG03_451 PF00999 Sodium/hydrogen exchanger family BG03_4510 PF01032 FecCD transport family BG03_4511 PF01032 FecCD transport family BG03_4512 PF01497 Periplasmic binding protein BG03_4513 PF00854 POT family BG03_4514 PF08141 Small acid-soluble spore protein H family BG03_4515 PF01022 Bacterial regulatory protein, arsR family BG03_4516 PF02652 L-lactate permease BG03_4517 PF00206 Lyase BG03_4517 PF10415 Fumarase C C-terminus BG03_4518 PF01595 Cyclin M transmembrane N-terminal domain BG03_4518 PF03471 Transporter associated domain BG03_4518 PF00571 CBS domain BG03_4519 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_452 PF07690 Major Facilitator Superfamily BG03_4520 PF07662 Na+ dependent nucleoside transporter C-terminus BG03_4520 PF01773 Na+ dependent nucleoside transporter N-terminus BG03_4521 PF03816 Cell envelope-related transcriptional attenuator domain BG03_4523 PF04294 VanW like protein BG03_4527 PF02868 Thermolysin metallopeptidase, alpha-helical domain BG03_4527 PF01447 Thermolysin metallopeptidase, catalytic domain BG03_4527 PF03413 Peptidase propeptide and YPEB domain BG03_4527 PF07504 Fungalysin/Thermolysin Propeptide Motif BG03_453 PF08264 Anticodon-binding domain of tRNA BG03_453 PF00133 tRNA synthetases class I (I, L, M and V) BG03_453 PF13603 Leucyl-tRNA synthetase, Domain 2 BG03_453 PF09334 tRNA synthetases class I (M) BG03_4530 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BG03_4530 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BG03_4530 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BG03_4531 PF00403 Heavy-metal-associated domain BG03_4532 PF01022 Bacterial regulatory protein, arsR family BG03_4533 PF13520 Amino acid permease BG03_4534 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BG03_4534 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG03_4536 PF07849 Protein of unknown function (DUF1641) BG03_4537 PF01568 Molydopterin dinucleotide binding domain BG03_4537 PF00037 4Fe-4S binding domain BG03_4537 PF00384 Molybdopterin oxidoreductase BG03_4537 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BG03_4537 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BG03_4538 PF02634 FdhD/NarQ family BG03_4539 PF00583 Acetyltransferase (GNAT) family BG03_4539 PF13508 Acetyltransferase (GNAT) domain BG03_4541 PF00072 Response regulator receiver domain BG03_4541 PF00486 Transcriptional regulatory protein, C terminal BG03_4542 PF00989 PAS fold BG03_4542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4542 PF18698 Histidine kinase sensor domain BG03_4542 PF00672 HAMP domain BG03_4542 PF00512 His Kinase A (phospho-acceptor) domain BG03_4544 PF00392 Bacterial regulatory proteins, gntR family BG03_4544 PF00155 Aminotransferase class I and II BG03_4545 PF00892 EamA-like transporter family BG03_4547 PF00390 Malic enzyme, N-terminal domain BG03_4547 PF03949 Malic enzyme, NAD binding domain BG03_4548 PF03390 2-hydroxycarboxylate transporter family BG03_4549 PF00072 Response regulator receiver domain BG03_4550 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG03_4550 PF17203 Single cache domain 3 BG03_4550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4550 PF00989 PAS fold BG03_4551 PF00672 HAMP domain BG03_4551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_4551 PF02743 Cache domain BG03_4552 PF13529 Peptidase_C39 like family BG03_4554 PF00512 His Kinase A (phospho-acceptor) domain BG03_4554 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4555 PF00486 Transcriptional regulatory protein, C terminal BG03_4555 PF00072 Response regulator receiver domain BG03_4560 PF03600 Citrate transporter BG03_4561 PF12431 Transcriptional regulator BG03_4561 PF00072 Response regulator receiver domain BG03_4562 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG03_4562 PF17203 Single cache domain 3 BG03_4562 PF00989 PAS fold BG03_4562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4563 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_4563 PF02743 Cache domain BG03_4563 PF00672 HAMP domain BG03_4564 PF01145 SPFH domain / Band 7 family BG03_4564 PF15975 Flotillin BG03_4566 PF08453 Peptidase family M9 N-terminal BG03_4566 PF18496 Collagenase G catalytic helper subdomain BG03_4566 PF01752 Collagenase BG03_4567 PF02028 BCCT, betaine/carnitine/choline family transporter BG03_4570 PF00072 Response regulator receiver domain BG03_4570 PF04397 LytTr DNA-binding domain BG03_4571 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG03_4571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4573 PF04647 Accessory gene regulator B BG03_458 PF03845 Spore germination protein BG03_4581 PF00005 ABC transporter BG03_4589 PF00005 ABC transporter BG03_459 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_4590 PF04285 Protein of unknown function (DUF444) BG03_4591 PF06798 PrkA serine protein kinase C-terminal domain BG03_4591 PF08298 PrkA AAA domain BG03_4593 PF00563 EAL domain BG03_4593 PF00990 Diguanylate cyclase, GGDEF domain BG03_4593 PF03707 Bacterial signalling protein N terminal repeat BG03_4594 PF00588 SpoU rRNA Methylase family BG03_4595 PF12671 Putative amidase domain BG03_4596 PF08331 Domain of unknown function (DUF1730) BG03_4598 PF13462 Thioredoxin BG03_4599 PF00912 Transglycosylase BG03_4599 PF00905 Penicillin binding protein transpeptidase domain BG03_46 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_460 PF00561 alpha/beta hydrolase fold BG03_4600 PF13344 Haloacid dehalogenase-like hydrolase BG03_4600 PF00293 NUDIX domain BG03_4601 PF01709 Transcriptional regulator BG03_462 PF00581 Rhodanese-like domain BG03_4622 PF11023 Zinc-ribbon containing domain BG03_4623 PF01475 Ferric uptake regulator family BG03_4624 PF00578 AhpC/TSA family BG03_4625 PF07885 Ion channel BG03_4628 PF00005 ABC transporter BG03_4629 PF00202 Aminotransferase class-III BG03_4630 PF04898 Glutamate synthase central domain BG03_4630 PF00310 Glutamine amidotransferases class-II BG03_4630 PF01493 GXGXG motif BG03_4630 PF01645 Conserved region in glutamate synthase BG03_4631 PF06081 Aromatic acid exporter family member 1 BG03_4632 PF00005 ABC transporter BG03_4632 PF00664 ABC transporter transmembrane region BG03_4633 PF04167 Protein of unknown function (DUF402) BG03_4634 PF14182 YgaB-like protein BG03_4635 PF04259 Small, acid-soluble spore protein, gamma-type BG03_4637 PF14815 NUDIX domain BG03_4637 PF00730 HhH-GPD superfamily base excision DNA repair protein BG03_4638 PF04307 LexA-binding, inner membrane-associated putative hydrolase BG03_4639 PF14043 WVELL protein BG03_4640 PF08176 Small acid-soluble spore protein K family BG03_4643 PF02631 RecX family BG03_4644 PF08338 Domain of unknown function (DUF1731) BG03_4644 PF01370 NAD dependent epimerase/dehydratase family BG03_4645 PF01979 Amidohydrolase family BG03_4648 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BG03_4648 PF04101 Glycosyltransferase family 28 C-terminal domain BG03_4649 PF04055 Radical SAM superfamily BG03_4650 PF02901 Pyruvate formate lyase-like BG03_4650 PF01228 Glycine radical BG03_4651 PF00535 Glycosyl transferase family 2 BG03_4652 PF01370 NAD dependent epimerase/dehydratase family BG03_4652 PF02911 Formyl transferase, C-terminal domain BG03_4652 PF00551 Formyl transferase BG03_4653 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG03_4653 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG03_4653 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG03_4654 PF00535 Glycosyl transferase family 2 BG03_4658 PF00144 Beta-lactamase BG03_4659 PF00367 phosphotransferase system, EIIB BG03_4659 PF02378 Phosphotransferase system, EIIC BG03_466 PF06463 Molybdenum Cofactor Synthesis C BG03_466 PF04055 Radical SAM superfamily BG03_4660 PF04960 Glutaminase BG03_4665 PF07687 Peptidase dimerisation domain BG03_4665 PF01546 Peptidase family M20/M25/M40 BG03_4666 PF00324 Amino acid permease BG03_4668 PF02954 Bacterial regulatory protein, Fis family BG03_4668 PF13426 PAS domain BG03_4668 PF00158 Sigma-54 interaction domain BG03_467 PF00899 ThiF family BG03_4670 PF01416 tRNA pseudouridine synthase BG03_4671 PF01938 TRAM domain BG03_4671 PF05958 tRNA (Uracil-5-)-methyltransferase BG03_4672 PF00730 HhH-GPD superfamily base excision DNA repair protein BG03_4673 PF01522 Polysaccharide deacetylase BG03_4674 PF05681 Fumarate hydratase (Fumerase) BG03_4674 PF05683 Fumarase C-terminus BG03_4676 PF08756 YfkB-like domain BG03_4676 PF04055 Radical SAM superfamily BG03_4677 PF14167 YfkD-like protein BG03_4678 PF01699 Sodium/calcium exchanger protein BG03_4679 PF16242 Pyridoxamine 5'-phosphate oxidase like BG03_468 PF01967 MoaC family BG03_4682 PF09335 SNARE associated Golgi protein BG03_4684 PF10502 Signal peptidase, peptidase S26 BG03_4686 PF00892 EamA-like transporter family BG03_4688 PF03631 Virulence factor BrkB BG03_469 PF03453 MoeA N-terminal region (domain I and II) BG03_469 PF03454 MoeA C-terminal region (domain IV) BG03_469 PF00994 Probable molybdopterin binding domain BG03_4690 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG03_4691 PF06569 Protein of unknown function (DUF1128) BG03_4692 PF00690 Cation transporter/ATPase, N-terminus BG03_4692 PF00689 Cation transporting ATPase, C-terminus BG03_4693 PF05816 Toxic anion resistance protein (TelA) BG03_4694 PF14266 Putative component of 'biosynthetic module' BG03_4695 PF03741 Integral membrane protein TerC family BG03_4696 PF02342 TerD domain BG03_4697 PF02342 TerD domain BG03_4698 PF02342 TerD domain BG03_4699 PF00480 ROK family BG03_470 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BG03_4701 PF03129 Anticodon binding domain BG03_4701 PF09180 Prolyl-tRNA synthetase, C-terminal BG03_4701 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG03_4704 PF11700 Vacuole effluxer Atg22 like BG03_4708 PF08360 QacR-like protein, C-terminal region BG03_4708 PF00440 Bacterial regulatory proteins, tetR family BG03_471 PF02391 MoaE protein BG03_4713 PF00704 Glycosyl hydrolases family 18 BG03_4713 PF00041 Fibronectin type III domain BG03_4714 PF12848 ABC transporter BG03_4714 PF00005 ABC transporter BG03_4716 PF00005 ABC transporter BG03_4718 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4719 PF01910 Thiamine-binding protein BG03_4720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_4720 PF00672 HAMP domain BG03_4721 PF03605 Anaerobic c4-dicarboxylate membrane transporter BG03_4722 PF02581 Thiamine monophosphate synthase BG03_4723 PF02110 Hydroxyethylthiazole kinase family BG03_4724 PF01751 Toprim domain BG03_4724 PF01131 DNA topoisomerase BG03_4725 PF01061 ABC-2 type transporter BG03_4726 PF03372 Endonuclease/Exonuclease/phosphatase family BG03_4727 PF02378 Phosphotransferase system, EIIC BG03_4727 PF00367 phosphotransferase system, EIIB BG03_4727 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG03_4728 PF16657 Maltogenic Amylase, C-terminal domain BG03_4728 PF00128 Alpha amylase, catalytic domain BG03_4729 PF08031 Berberine and berberine like BG03_4729 PF01565 FAD binding domain BG03_4730 PF02743 Cache domain BG03_4730 PF00672 HAMP domain BG03_4730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_4731 PF00005 ABC transporter BG03_4732 PF00497 Bacterial extracellular solute-binding proteins, family 3 BG03_4733 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4735 PF01266 FAD dependent oxidoreductase BG03_4735 PF00355 Rieske [2Fe-2S] domain BG03_4736 PF07690 Major Facilitator Superfamily BG03_4737 PF10127 RNA repair pathway DNA polymerase beta family BG03_474 PF06800 Sugar transport protein BG03_4741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4741 PF00512 His Kinase A (phospho-acceptor) domain BG03_4741 PF00989 PAS fold BG03_4741 PF13188 PAS domain BG03_4741 PF13426 PAS domain BG03_4746 PF12728 Helix-turn-helix domain BG03_4748 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_4749 PF01497 Periplasmic binding protein BG03_4750 PF01032 FecCD transport family BG03_4751 PF01032 FecCD transport family BG03_4752 PF00596 Class II Aldolase and Adducin N-terminal domain BG03_4754 PF01636 Phosphotransferase enzyme family BG03_4755 PF00578 AhpC/TSA family BG03_4756 PF07992 Pyridine nucleotide-disulphide oxidoreductase BG03_4756 PF13192 Thioredoxin domain BG03_4758 PF07687 Peptidase dimerisation domain BG03_4758 PF01546 Peptidase family M20/M25/M40 BG03_476 PF02559 CarD-like/TRCF domain BG03_4761 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BG03_4761 PF13378 Enolase C-terminal domain-like BG03_4764 PF07308 Protein of unknown function (DUF1456) BG03_4765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4765 PF00512 His Kinase A (phospho-acceptor) domain BG03_4765 PF00989 PAS fold BG03_4765 PF13426 PAS domain BG03_4765 PF13188 PAS domain BG03_4766 PF01207 Dihydrouridine synthase (Dus) BG03_4767 PF02475 Met-10+ like-protein BG03_4767 PF01938 TRAM domain BG03_4767 PF05958 tRNA (Uracil-5-)-methyltransferase BG03_4768 PF01773 Na+ dependent nucleoside transporter N-terminus BG03_4768 PF07670 Nucleoside recognition BG03_4768 PF07662 Na+ dependent nucleoside transporter C-terminus BG03_4771 PF02073 Thermophilic metalloprotease (M29) BG03_4772 PF00893 Small Multidrug Resistance protein BG03_4773 PF00171 Aldehyde dehydrogenase family BG03_4774 PF00158 Sigma-54 interaction domain BG03_4775 PF00202 Aminotransferase class-III BG03_4777 PF13419 Haloacid dehalogenase-like hydrolase BG03_4778 PF00781 Diacylglycerol kinase catalytic domain BG03_4779 PF02934 GatB/GatE catalytic domain BG03_4779 PF02637 GatB domain BG03_478 PF10957 Sporulation protein Cse60 BG03_4780 PF01425 Amidase BG03_4781 PF02686 Glu-tRNAGln amidotransferase C subunit BG03_4782 PF05360 yiaA/B two helix domain BG03_4783 PF01047 MarR family BG03_4784 PF02374 Anion-transporting ATPase BG03_4784 PF17886 HSP20-like domain found in ArsA BG03_4787 PF03180 NLPA lipoprotein BG03_4788 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4789 PF09383 NIL domain BG03_4789 PF00005 ABC transporter BG03_4790 PF00857 Isochorismatase family BG03_4792 PF00171 Aldehyde dehydrogenase family BG03_4793 PF01925 Sulfite exporter TauE/SafE BG03_4794 PF07537 CamS sex pheromone cAM373 precursor BG03_4795 PF01653 NAD-dependent DNA ligase adenylation domain BG03_4795 PF03120 NAD-dependent DNA ligase OB-fold domain BG03_4795 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BG03_4795 PF00533 BRCA1 C Terminus (BRCT) domain BG03_4795 PF12826 Helix-hairpin-helix motif BG03_4796 PF00580 UvrD/REP helicase N-terminal domain BG03_4796 PF13361 UvrD-like helicase C-terminal domain BG03_4797 PF01884 PcrB family BG03_48 PF00293 NUDIX domain BG03_480 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BG03_4801 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BG03_4801 PF02844 Phosphoribosylglycinamide synthetase, N domain BG03_4801 PF02843 Phosphoribosylglycinamide synthetase, C domain BG03_4802 PF01808 AICARFT/IMPCHase bienzyme BG03_4802 PF02142 MGS-like domain BG03_4803 PF00551 Formyl transferase BG03_4804 PF02769 AIR synthase related protein, C-terminal domain BG03_4804 PF00586 AIR synthase related protein, N-terminal domain BG03_4805 PF00156 Phosphoribosyl transferase domain BG03_4806 PF00586 AIR synthase related protein, N-terminal domain BG03_4806 PF02769 AIR synthase related protein, C-terminal domain BG03_4806 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BG03_4808 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BG03_4809 PF01259 SAICAR synthetase BG03_481 PF01022 Bacterial regulatory protein, arsR family BG03_4810 PF00206 Lyase BG03_4810 PF10397 Adenylosuccinate lyase C-terminus BG03_4811 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BG03_4811 PF02222 ATP-grasp domain BG03_4812 PF00731 AIR carboxylase BG03_4818 PF00892 EamA-like transporter family BG03_482 PF07690 Major Facilitator Superfamily BG03_4823 PF01619 Proline dehydrogenase BG03_4824 PF00392 Bacterial regulatory proteins, gntR family BG03_4824 PF00155 Aminotransferase class I and II BG03_4829 PF00535 Glycosyl transferase family 2 BG03_4833 PF08241 Methyltransferase domain BG03_4835 PF05045 Rhamnan synthesis protein F BG03_4835 PF14307 Glycosyltransferase WbsX BG03_484 PF14667 Polysaccharide biosynthesis C-terminal domain BG03_484 PF01943 Polysaccharide biosynthesis protein BG03_4840 PF01323 DSBA-like thioredoxin domain BG03_4846 PF16736 Single Cache-like BG03_4846 PF00989 PAS fold BG03_4846 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_4846 PF00512 His Kinase A (phospho-acceptor) domain BG03_4847 PF00072 Response regulator receiver domain BG03_4847 PF00486 Transcriptional regulatory protein, C terminal BG03_4848 PF00860 Permease family BG03_4849 PF00117 Glutamine amidotransferase class-I BG03_4849 PF00958 GMP synthase C terminal domain BG03_4849 PF02540 NAD synthase BG03_485 PF00849 RNA pseudouridylate synthase BG03_485 PF01479 S4 domain BG03_4850 PF00118 TCP-1/cpn60 chaperonin family BG03_4851 PF00166 Chaperonin 10 Kd subunit BG03_4852 PF02517 CPBP intramembrane metalloprotease BG03_4854 PF06971 Putative DNA-binding protein N-terminus BG03_4854 PF02629 CoA binding domain BG03_4855 PF00005 ABC transporter BG03_4855 PF12848 ABC transporter BG03_4855 PF16326 ABC transporter C-terminal domain BG03_4856 PF00814 Glycoprotease family BG03_4857 PF00583 Acetyltransferase (GNAT) family BG03_4858 PF00814 Glycoprotease family BG03_4859 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BG03_486 PF08220 DeoR-like helix-turn-helix domain BG03_487 PF01546 Peptidase family M20/M25/M40 BG03_4877 PF17283 SprT-like zinc ribbon domain BG03_4877 PF10263 SprT-like family BG03_4878 PF16921 Tex protein YqgF-like domain BG03_4878 PF17674 HHH domain BG03_4878 PF09371 Tex-like protein N-terminal domain BG03_4878 PF00575 S1 RNA binding domain BG03_4879 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BG03_488 PF02834 LigT like Phosphoesterase BG03_4880 PF01402 Ribbon-helix-helix protein, copG family BG03_4881 PF00842 Alanine racemase, C-terminal domain BG03_4881 PF01168 Alanine racemase, N-terminal domain BG03_4883 PF01648 4'-phosphopantetheinyl transferase superfamily BG03_4884 PF03851 UV-endonuclease UvdE BG03_4885 PF01694 Rhomboid family BG03_4886 PF00271 Helicase conserved C-terminal domain BG03_4886 PF00270 DEAD/DEAH box helicase BG03_4887 PF02875 Mur ligase family, glutamate ligase domain BG03_4887 PF08245 Mur ligase middle domain BG03_4887 PF01225 Mur ligase family, catalytic domain BG03_4888 PF01820 D-ala D-ala ligase N-terminus BG03_4888 PF07478 D-ala D-ala ligase C-terminus BG03_4889 PF07690 Major Facilitator Superfamily BG03_489 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BG03_489 PF00128 Alpha amylase, catalytic domain BG03_489 PF17999 Pullulanase N1-terminal domain BG03_4890 PF13520 Amino acid permease BG03_4892 PF01557 Fumarylacetoacetate (FAA) hydrolase family BG03_4893 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_49 PF03668 P-loop ATPase protein family BG03_490 PF01636 Phosphotransferase enzyme family BG03_4900 PF00005 ABC transporter BG03_4900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_4901 PF00005 ABC transporter BG03_4901 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_4903 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4904 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_4905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_4909 PF00005 ABC transporter BG03_491 PF14165 YtzH-like protein BG03_4910 PF00072 Response regulator receiver domain BG03_4910 PF00196 Bacterial regulatory proteins, luxR family BG03_4911 PF07730 Histidine kinase BG03_4912 PF12848 ABC transporter BG03_4912 PF00005 ABC transporter BG03_4912 PF16326 ABC transporter C-terminal domain BG03_4915 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BG03_4917 PF01026 TatD related DNase BG03_492 PF02390 Putative methyltransferase BG03_4920 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_4920 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_4922 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG03_4922 PF00356 Bacterial regulatory proteins, lacI family BG03_4924 PF01553 Acyltransferase BG03_4925 PF14142 YrzO-like protein BG03_4926 PF00892 EamA-like transporter family BG03_4927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_4927 PF03466 LysR substrate binding domain BG03_4929 PF12728 Helix-turn-helix domain BG03_4929 PF12727 PBP superfamily domain BG03_493 PF00753 Metallo-beta-lactamase superfamily BG03_4932 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4933 PF06800 Sugar transport protein BG03_4934 PF04973 Nicotinamide mononucleotide transporter BG03_4935 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG03_4935 PF03807 NADP oxidoreductase coenzyme F420-dependent BG03_4936 PF00248 Aldo/keto reductase family BG03_4937 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_4938 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_4941 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BG03_4942 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_4942 PF00005 ABC transporter BG03_4943 PF00005 ABC transporter BG03_4943 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BG03_4944 PF12911 N-terminal TM domain of oligopeptide transport permease C BG03_4944 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4945 PF00528 Binding-protein-dependent transport system inner membrane component BG03_4949 PF07690 Major Facilitator Superfamily BG03_495 PF05343 M42 glutamyl aminopeptidase BG03_4951 PF07690 Major Facilitator Superfamily BG03_4952 PF01565 FAD binding domain BG03_496 PF01931 Protein of unknown function DUF84 BG03_4962 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BG03_4962 PF00326 Prolyl oligopeptidase family BG03_4964 PF01380 SIS domain BG03_4965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BG03_4965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BG03_4965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BG03_4965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BG03_4966 PF07949 YbbR-like protein BG03_4967 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG03_4968 PF00491 Arginase family BG03_4969 PF02595 Glycerate kinase family BG03_497 PF00085 Thioredoxin BG03_498 PF07285 Protein of unknown function (DUF1444) BG03_4984 PF01522 Polysaccharide deacetylase BG03_4985 PF14089 KinB-signalling pathway activation in sporulation BG03_4986 PF17898 Spore germination GerD central core domain BG03_4987 PF10609 NUBPL iron-transfer P-loop NTPase BG03_4988 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_499 PF14794 Domain of unknown function (DUF4479) BG03_499 PF01588 Putative tRNA binding domain BG03_4990 PF00380 Ribosomal protein S9/S16 BG03_4991 PF00572 Ribosomal protein L13 BG03_4992 PF01416 tRNA pseudouridine synthase BG03_4993 PF02361 Cobalt transport protein BG03_4994 PF00005 ABC transporter BG03_4995 PF00005 ABC transporter BG03_4996 PF01196 Ribosomal protein L17 BG03_4997 PF01000 RNA polymerase Rpb3/RpoA insert domain BG03_4997 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BG03_4997 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BG03_4998 PF00411 Ribosomal protein S11 BG03_4999 PF00416 Ribosomal protein S13/S18 BG03_5 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BG03_5 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BG03_5 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BG03_50 PF01933 Uncharacterised protein family UPF0052 BG03_5000 PF00444 Ribosomal protein L36 BG03_5001 PF01176 Translation initiation factor 1A / IF-1 BG03_5002 PF00557 Metallopeptidase family M24 BG03_5003 PF05191 Adenylate kinase, active site lid BG03_5004 PF00344 SecY translocase BG03_5005 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BG03_5006 PF00327 Ribosomal protein L30p/L7e BG03_5007 PF03719 Ribosomal protein S5, C-terminal domain BG03_5007 PF00333 Ribosomal protein S5, N-terminal domain BG03_5008 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BG03_5009 PF00347 Ribosomal protein L6 BG03_501 PF08239 Bacterial SH3 domain BG03_501 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_5010 PF00410 Ribosomal protein S8 BG03_5011 PF00253 Ribosomal protein S14p/S29e BG03_5012 PF00673 ribosomal L5P family C-terminus BG03_5012 PF00281 Ribosomal protein L5 BG03_5013 PF00467 KOW motif BG03_5013 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BG03_5014 PF00238 Ribosomal protein L14p/L23e BG03_5015 PF00366 Ribosomal protein S17 BG03_5016 PF00831 Ribosomal L29 protein BG03_5017 PF00252 Ribosomal protein L16p/L10e BG03_5018 PF07650 KH domain BG03_5018 PF00189 Ribosomal protein S3, C-terminal domain BG03_5019 PF00237 Ribosomal protein L22p/L17e BG03_502 PF01580 FtsK/SpoIIIE family BG03_502 PF09397 Ftsk gamma domain BG03_502 PF17854 FtsK alpha domain BG03_5020 PF00203 Ribosomal protein S19 BG03_5021 PF00181 Ribosomal Proteins L2, RNA binding domain BG03_5021 PF03947 Ribosomal Proteins L2, C-terminal domain BG03_5022 PF00276 Ribosomal protein L23 BG03_5023 PF00573 Ribosomal protein L4/L1 family BG03_5024 PF00297 Ribosomal protein L3 BG03_5025 PF00338 Ribosomal protein S10p/S20e BG03_5026 PF00009 Elongation factor Tu GTP binding domain BG03_5026 PF03143 Elongation factor Tu C-terminal domain BG03_5026 PF03144 Elongation factor Tu domain 2 BG03_5027 PF03144 Elongation factor Tu domain 2 BG03_5027 PF14492 Elongation Factor G, domain II BG03_5027 PF03764 Elongation factor G, domain IV BG03_5027 PF00679 Elongation factor G C-terminus BG03_5027 PF00009 Elongation factor Tu GTP binding domain BG03_5028 PF00177 Ribosomal protein S7p/S5e BG03_5029 PF00164 Ribosomal protein S12/S23 BG03_5030 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BG03_5031 PF05000 RNA polymerase Rpb1, domain 4 BG03_5031 PF04998 RNA polymerase Rpb1, domain 5 BG03_5031 PF04983 RNA polymerase Rpb1, domain 3 BG03_5031 PF00623 RNA polymerase Rpb1, domain 2 BG03_5031 PF04997 RNA polymerase Rpb1, domain 1 BG03_5032 PF10385 RNA polymerase beta subunit external 1 domain BG03_5032 PF04565 RNA polymerase Rpb2, domain 3 BG03_5032 PF04561 RNA polymerase Rpb2, domain 2 BG03_5032 PF00562 RNA polymerase Rpb2, domain 6 BG03_5032 PF04563 RNA polymerase beta subunit BG03_5032 PF04560 RNA polymerase Rpb2, domain 7 BG03_5033 PF05175 Methyltransferase small domain BG03_5034 PF00542 Ribosomal protein L7/L12 C-terminal domain BG03_5034 PF16320 Ribosomal protein L7/L12 dimerisation domain BG03_5035 PF00466 Ribosomal protein L10 BG03_5036 PF00687 Ribosomal protein L1p/L10e family BG03_5037 PF03946 Ribosomal protein L11, N-terminal domain BG03_5037 PF00298 Ribosomal protein L11, RNA binding domain BG03_5038 PF00467 KOW motif BG03_5038 PF02357 Transcription termination factor nusG BG03_5039 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BG03_504 PF02875 Mur ligase family, glutamate ligase domain BG03_504 PF08245 Mur ligase middle domain BG03_504 PF01225 Mur ligase family, catalytic domain BG03_5040 PF04542 Sigma-70 region 2 BG03_5040 PF08281 Sigma-70, region 4 BG03_5041 PF05991 YacP-like NYN domain BG03_5042 PF00588 SpoU rRNA Methylase family BG03_5042 PF08032 RNA 2'-O ribose methyltransferase substrate binding BG03_5043 PF00636 Ribonuclease III domain BG03_5044 PF09190 DALR domain BG03_5044 PF01406 tRNA synthetases class I (C) catalytic domain BG03_5045 PF06426 Serine acetyltransferase, N-terminal BG03_5045 PF00132 Bacterial transferase hexapeptide (six repeats) BG03_5046 PF00749 tRNA synthetases class I (E and Q), catalytic domain BG03_5047 PF02542 YgbB family BG03_5048 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BG03_5050 PF10635 DisA bacterial checkpoint controller linker region BG03_5050 PF02457 DisA bacterial checkpoint controller nucleotide-binding BG03_5051 PF18073 Rubredoxin metal binding domain BG03_5052 PF10431 C-terminal, D2-small domain, of ClpB protein BG03_5052 PF02861 Clp amino terminal domain, pathogenicity island component BG03_5052 PF17871 AAA lid domain BG03_5052 PF07724 AAA domain (Cdc48 subfamily) BG03_5052 PF00004 ATPase family associated with various cellular activities (AAA) BG03_5053 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BG03_5054 PF02151 UvrB/uvrC motif BG03_5055 PF17727 CtsR C-terminal dimerization domain BG03_5055 PF05848 CtsR N-terminal HTH domain BG03_506 PF03551 Transcriptional regulator PadR-like family BG03_507 PF13411 MerR HTH family regulatory protein BG03_5072 PF01336 OB-fold nucleic acid binding domain BG03_5072 PF00152 tRNA synthetases class II (D, K and N) BG03_5073 PF01207 Dihydrouridine synthase (Dus) BG03_5074 PF01381 Helix-turn-helix BG03_5075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BG03_5076 PF02152 Dihydroneopterin aldolase BG03_5077 PF00809 Pterin binding enzyme BG03_5078 PF01063 Amino-transferase class IV BG03_5079 PF00117 Glutamine amidotransferase class-I BG03_508 PF00892 EamA-like transporter family BG03_5080 PF04715 Anthranilate synthase component I, N terminal region BG03_5080 PF00425 chorismate binding enzyme BG03_5081 PF00291 Pyridoxal-phosphate dependent enzyme BG03_5082 PF01430 Hsp33 protein BG03_5083 PF03309 Type III pantothenate kinase BG03_5084 PF01434 Peptidase family M41 BG03_5084 PF06480 FtsH Extracellular BG03_5084 PF17862 AAA+ lid domain BG03_5084 PF00004 ATPase family associated with various cellular activities (AAA) BG03_5086 PF11734 TilS substrate C-terminal domain BG03_5086 PF09179 TilS substrate binding domain BG03_5086 PF01171 PP-loop family BG03_5087 PF07228 Stage II sporulation protein E (SpoIIE) BG03_509 PF13302 Acetyltransferase (GNAT) domain BG03_5090 PF00575 S1 RNA binding domain BG03_5092 PF09578 Spore cortex protein YabQ (Spore_YabQ) BG03_5093 PF07873 YabP family BG03_5094 PF01479 S4 domain BG03_5095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG03_5095 PF03819 MazG nucleotide pyrophosphohydrolase domain BG03_5096 PF01943 Polysaccharide biosynthesis protein BG03_5096 PF14667 Polysaccharide biosynthesis C-terminal domain BG03_5097 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG03_5097 PF15714 Stage V sporulation protein T C-terminal, transcription factor BG03_5098 PF03461 TRCF domain BG03_5098 PF17757 UvrB interaction domain BG03_5098 PF00270 DEAD/DEAH box helicase BG03_5098 PF02559 CarD-like/TRCF domain BG03_5098 PF00271 Helicase conserved C-terminal domain BG03_5099 PF17757 UvrB interaction domain BG03_5099 PF03461 TRCF domain BG03_5099 PF02559 CarD-like/TRCF domain BG03_5099 PF00270 DEAD/DEAH box helicase BG03_5099 PF00271 Helicase conserved C-terminal domain BG03_51 PF02650 WhiA C-terminal HTH domain BG03_51 PF10298 WhiA N-terminal LAGLIDADG-like domain BG03_51 PF14527 WhiA LAGLIDADG-like domain BG03_5101 PF01195 Peptidyl-tRNA hydrolase BG03_5102 PF14572 Phosphoribosyl synthetase-associated domain BG03_5102 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BG03_5103 PF00483 Nucleotidyl transferase BG03_5103 PF00132 Bacterial transferase hexapeptide (six repeats) BG03_5104 PF04026 SpoVG BG03_5105 PF01042 Endoribonuclease L-PSP BG03_5106 PF00156 Phosphoribosyl transferase domain BG03_5106 PF09182 Bacterial purine repressor, N-terminal BG03_5107 PF08544 GHMP kinases C terminal BG03_5107 PF00288 GHMP kinases N terminal domain BG03_5108 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG03_5109 PF06257 Biofilm formation stimulator VEG BG03_5110 PF05582 YabG peptidase U57 BG03_5111 PF00398 Ribosomal RNA adenine dimethylase BG03_5112 PF13662 Toprim domain BG03_5112 PF13331 Domain of unknown function (DUF4093) BG03_5113 PF01026 TatD related DNase BG03_5114 PF01588 Putative tRNA binding domain BG03_5114 PF09334 tRNA synthetases class I (M) BG03_5114 PF08264 Anticodon-binding domain of tRNA BG03_5115 PF18277 AbrB C-terminal domain BG03_5115 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BG03_5116 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BG03_5117 PF01541 GIY-YIG catalytic domain BG03_5118 PF05175 Methyltransferase small domain BG03_5119 PF06156 Initiation control protein YabA BG03_5120 PF04468 PSP1 C-terminal conserved region BG03_5121 PF09115 DNA polymerase III, delta subunit, C terminal BG03_5122 PF02223 Thymidylate kinase BG03_5123 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BG03_5123 PF01276 Orn/Lys/Arg decarboxylase, major domain BG03_5129 PF07441 SigmaK-factor processing regulatory protein BofA BG03_513 PF02073 Thermophilic metalloprotease (M29) BG03_5130 PF10704 Protein of unknown function (DUF2508) BG03_5131 PF13662 Toprim domain BG03_5131 PF02132 RecR protein BG03_5132 PF02575 YbaB/EbfC DNA-binding family BG03_5133 PF12169 DNA polymerase III subunits gamma and tau domain III BG03_5134 PF14437 MafB19-like deaminase BG03_5135 PF00857 Isochorismatase family BG03_5136 PF01712 Deoxynucleoside kinase BG03_5137 PF01712 Deoxynucleoside kinase BG03_5140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG03_5140 PF02403 Seryl-tRNA synthetase N-terminal domain BG03_5141 PF01174 SNO glutamine amidotransferase family BG03_5142 PF01680 SOR/SNZ family BG03_5143 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_5143 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_5144 PF00478 IMP dehydrogenase / GMP reductase domain BG03_5144 PF00571 CBS domain BG03_5145 PF14175 YaaC-like Protein BG03_515 PF11009 Protein of unknown function (DUF2847) BG03_5151 PF00521 DNA gyrase/topoisomerase IV, subunit A BG03_5151 PF03989 DNA gyrase C-terminal domain, beta-propeller BG03_5152 PF00986 DNA gyrase B subunit, carboxyl terminus BG03_5152 PF00204 DNA gyrase B BG03_5152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_5152 PF01751 Toprim domain BG03_5153 PF02463 RecF/RecN/SMC N terminal domain BG03_5155 PF00712 DNA polymerase III beta subunit, N-terminal domain BG03_5155 PF02768 DNA polymerase III beta subunit, C-terminal domain BG03_5155 PF02767 DNA polymerase III beta subunit, central domain BG03_5156 PF11638 DnaA N-terminal domain BG03_5156 PF08299 Bacterial dnaA protein helix-turn-helix BG03_5156 PF00308 Bacterial dnaA protein BG03_5157 PF00468 Ribosomal protein L34 BG03_5158 PF00825 Ribonuclease P BG03_5159 PF02096 60Kd inner membrane protein BG03_516 PF07537 CamS sex pheromone cAM373 precursor BG03_5160 PF14804 Jag N-terminus BG03_5160 PF01424 R3H domain BG03_5161 PF10396 GTP-binding protein TrmE N-terminus BG03_5161 PF12631 MnmE helical domain BG03_5161 PF01926 50S ribosome-binding GTPase BG03_5162 PF01134 Glucose inhibited division protein A BG03_5162 PF13932 GidA associated domain BG03_5163 PF02527 rRNA small subunit methyltransferase G BG03_5164 PF02195 ParB-like nuclease domain BG03_5164 PF17762 HTH domain found in ParB protein BG03_5165 PF13614 AAA domain BG03_5166 PF02195 ParB-like nuclease domain BG03_5166 PF17762 HTH domain found in ParB protein BG03_5167 PF06866 Protein of unknown function (DUF1256) BG03_5168 PF00924 Mechanosensitive ion channel BG03_5169 PF06107 Bacterial protein of unknown function (DUF951) BG03_517 PF00356 Bacterial regulatory proteins, lacI family BG03_5170 PF06071 Protein of unknown function (DUF933) BG03_5170 PF01926 50S ribosome-binding GTPase BG03_5171 PF01250 Ribosomal protein S6 BG03_5172 PF00436 Single-strand binding protein family BG03_5173 PF01084 Ribosomal protein S18 BG03_5174 PF09991 Predicted membrane protein (DUF2232) BG03_5175 PF01368 DHH family BG03_5175 PF02272 DHHA1 domain BG03_5176 PF01281 Ribosomal protein L9, N-terminal domain BG03_5176 PF03948 Ribosomal protein L9, C-terminal domain BG03_5177 PF00772 DnaB-like helicase N terminal domain BG03_5177 PF03796 DnaB-like helicase C terminal domain BG03_5178 PF00709 Adenylosuccinate synthetase BG03_5183 PF00486 Transcriptional regulatory protein, C terminal BG03_5183 PF00072 Response regulator receiver domain BG03_5184 PF13426 PAS domain BG03_5184 PF00512 His Kinase A (phospho-acceptor) domain BG03_5184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_5184 PF00672 HAMP domain BG03_5185 PF07435 YycH protein BG03_5186 PF09648 YycH protein BG03_5187 PF00753 Metallo-beta-lactamase superfamily BG03_5188 PF13180 PDZ domain BG03_5190 PF02590 Predicted SPOUT methyltransferase BG03_5193 PF01432 Peptidase family M3 BG03_5193 PF08439 Oligopeptidase F BG03_5194 PF00478 IMP dehydrogenase / GMP reductase domain BG03_5196 PF00270 DEAD/DEAH box helicase BG03_5196 PF03880 DbpA RNA binding domain BG03_5196 PF00271 Helicase conserved C-terminal domain BG03_5198 PF03006 Haemolysin-III related BG03_5199 PF16363 GDP-mannose 4,6 dehydratase BG03_52 PF00381 PTS HPr component phosphorylation site BG03_5201 PF02293 AmiS/UreI family transporter BG03_5203 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG03_5203 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG03_5204 PF02898 Nitric oxide synthase, oxygenase domain BG03_5205 PF02028 BCCT, betaine/carnitine/choline family transporter BG03_5206 PF07690 Major Facilitator Superfamily BG03_5207 PF06580 Histidine kinase BG03_5207 PF13492 GAF domain BG03_5207 PF07694 5TMR of 5TMR-LYT BG03_5207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_5208 PF00072 Response regulator receiver domain BG03_5208 PF04397 LytTr DNA-binding domain BG03_5209 PF03788 LrgA family BG03_521 PF01741 Large-conductance mechanosensitive channel, MscL BG03_5210 PF04172 LrgB-like family BG03_5211 PF01594 AI-2E family transporter BG03_5212 PF01625 Peptide methionine sulfoxide reductase BG03_5212 PF01641 SelR domain BG03_5213 PF00873 AcrB/AcrD/AcrF family BG03_5214 PF00440 Bacterial regulatory proteins, tetR family BG03_5215 PF00535 Glycosyl transferase family 2 BG03_5219 PF00005 ABC transporter BG03_5219 PF12848 ABC transporter BG03_522 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG03_5220 PF00535 Glycosyl transferase family 2 BG03_5222 PF03061 Thioesterase superfamily BG03_5224 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_5225 PF03458 UPF0126 domain BG03_5228 PF03808 Glycosyl transferase WecB/TagA/CpsF family BG03_5229 PF07690 Major Facilitator Superfamily BG03_523 PF04397 LytTr DNA-binding domain BG03_523 PF00072 Response regulator receiver domain BG03_5230 PF04397 LytTr DNA-binding domain BG03_5230 PF00072 Response regulator receiver domain BG03_5231 PF02554 Carbon starvation protein CstA BG03_5231 PF13722 5TM C-terminal transporter carbon starvation CstA BG03_5232 PF04328 Selenoprotein, putative BG03_5233 PF07694 5TMR of 5TMR-LYT BG03_5233 PF00990 Diguanylate cyclase, GGDEF domain BG03_5234 PF08543 Phosphomethylpyrimidine kinase BG03_5235 PF07730 Histidine kinase BG03_5235 PF13185 GAF domain BG03_5236 PF00072 Response regulator receiver domain BG03_5236 PF00196 Bacterial regulatory proteins, luxR family BG03_5237 PF02525 Flavodoxin-like fold BG03_5238 PF00027 Cyclic nucleotide-binding domain BG03_5239 PF13419 Haloacid dehalogenase-like hydrolase BG03_5241 PF01053 Cys/Met metabolism PLP-dependent enzyme BG03_5242 PF04204 Homoserine O-succinyltransferase BG03_5243 PF01842 ACT domain BG03_5243 PF03447 Homoserine dehydrogenase, NAD binding domain BG03_5243 PF00742 Homoserine dehydrogenase BG03_5245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG03_5245 PF00356 Bacterial regulatory proteins, lacI family BG03_5246 PF13472 GDSL-like Lipase/Acylhydrolase family BG03_5247 PF00005 ABC transporter BG03_5248 PF12679 ABC-2 family transporter protein BG03_5249 PF03167 Uracil DNA glycosylase superfamily BG03_5250 PF12823 Domain of unknown function (DUF3817) BG03_5252 PF00860 Permease family BG03_5253 PF07885 Ion channel BG03_5253 PF02254 TrkA-N domain BG03_5255 PF04241 Protein of unknown function (DUF423) BG03_5256 PF09671 Spore coat protein (Spore_GerQ) BG03_5257 PF07486 Cell Wall Hydrolase BG03_5258 PF07943 Penicillin-binding protein 5, C-terminal domain BG03_5258 PF00768 D-alanyl-D-alanine carboxypeptidase BG03_5260 PF01515 Phosphate acetyl/butaryl transferase BG03_5261 PF03099 Biotin/lipoate A/B protein ligase family BG03_5263 PF07293 Protein of unknown function (DUF1450) BG03_5264 PF01032 FecCD transport family BG03_5265 PF01032 FecCD transport family BG03_5266 PF00005 ABC transporter BG03_5267 PF01497 Periplasmic binding protein BG03_5268 PF01966 HD domain BG03_5269 PF01361 Tautomerase enzyme BG03_527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_527 PF06580 Histidine kinase BG03_5270 PF02163 Peptidase family M50 BG03_5271 PF08741 YwhD family BG03_5272 PF00912 Transglycosylase BG03_5272 PF00905 Penicillin binding protein transpeptidase domain BG03_5273 PF03009 Glycerophosphoryl diester phosphodiesterase family BG03_5274 PF13411 MerR HTH family regulatory protein BG03_5275 PF07690 Major Facilitator Superfamily BG03_5276 PF17284 Spermidine synthase tetramerisation domain BG03_5277 PF00491 Arginase family BG03_5280 PF02016 LD-carboxypeptidase N-terminal domain BG03_5280 PF17676 LD-carboxypeptidase C-terminal domain BG03_5281 PF09148 Domain of unknown function (DUF1934) BG03_5282 PF00750 tRNA synthetases class I (R) BG03_5282 PF05746 DALR anticodon binding domain BG03_5282 PF03485 Arginyl tRNA synthetase N terminal domain BG03_5283 PF08281 Sigma-70, region 4 BG03_5283 PF04542 Sigma-70 region 2 BG03_5287 PF17802 Prealbumin-like fold domain BG03_5287 PF05738 Cna protein B-type domain BG03_5287 PF05737 Collagen binding domain BG03_5288 PF04389 Peptidase family M28 BG03_5288 PF02225 PA domain BG03_5289 PF00557 Metallopeptidase family M24 BG03_529 PF00561 alpha/beta hydrolase fold BG03_5290 PF00005 ABC transporter BG03_5292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_5292 PF07730 Histidine kinase BG03_5293 PF00072 Response regulator receiver domain BG03_5293 PF00196 Bacterial regulatory proteins, luxR family BG03_5296 PF00563 EAL domain BG03_5296 PF00990 Diguanylate cyclase, GGDEF domain BG03_5296 PF03707 Bacterial signalling protein N terminal repeat BG03_5297 PF03851 UV-endonuclease UvdE BG03_5298 PF13091 PLD-like domain BG03_5299 PF13183 4Fe-4S dicluster domain BG03_5299 PF02754 Cysteine-rich domain BG03_53 PF00574 Clp protease BG03_530 PF00850 Histone deacetylase domain BG03_5300 PF00108 Thiolase, N-terminal domain BG03_5300 PF02803 Thiolase, C-terminal domain BG03_5301 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BG03_5301 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BG03_5302 PF02770 Acyl-CoA dehydrogenase, middle domain BG03_5302 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG03_5302 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG03_5303 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BG03_5303 PF02770 Acyl-CoA dehydrogenase, middle domain BG03_5303 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BG03_5305 PF05066 HB1, ASXL, restriction endonuclease HTH domain BG03_5306 PF00117 Glutamine amidotransferase class-I BG03_5306 PF06418 CTP synthase N-terminus BG03_5307 PF10740 Domain of unknown function (DUF2529) BG03_5308 PF00072 Response regulator receiver domain BG03_5309 PF01116 Fructose-bisphosphate aldolase class-II BG03_531 PF00571 CBS domain BG03_5310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG03_5311 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BG03_5312 PF07498 Rho termination factor, N-terminal domain BG03_5312 PF07497 Rho termination factor, RNA-binding domain BG03_5312 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG03_5313 PF01197 Ribosomal protein L31 BG03_5314 PF00265 Thymidine kinase BG03_5315 PF03462 PCRF domain BG03_5315 PF00472 RF-1 domain BG03_5316 PF17827 PrmC N-terminal domain BG03_5316 PF13847 Methyltransferase domain BG03_5317 PF09551 Stage II sporulation protein R (spore_II_R) BG03_5319 PF01300 Telomere recombination BG03_5319 PF03481 Putative GTP-binding controlling metal-binding BG03_532 PF00583 Acetyltransferase (GNAT) family BG03_5320 PF02659 Putative manganese efflux pump BG03_5323 PF01613 Flavin reductase like domain BG03_5324 PF07681 DoxX BG03_5325 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BG03_5326 PF01451 Low molecular weight phosphotyrosine protein phosphatase BG03_5327 PF02502 Ribose/Galactose Isomerase BG03_5328 PF04260 Protein of unknown function (DUF436) BG03_5329 PF00464 Serine hydroxymethyltransferase BG03_533 PF00501 AMP-binding enzyme BG03_533 PF13193 AMP-binding enzyme C-terminal domain BG03_5332 PF03899 ATP synthase I chain BG03_5333 PF00119 ATP synthase A chain BG03_5334 PF00137 ATP synthase subunit C BG03_5335 PF00430 ATP synthase B/B' CF(0) BG03_5336 PF00213 ATP synthase delta (OSCP) subunit BG03_5337 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG03_5337 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG03_5337 PF00306 ATP synthase alpha/beta chain, C terminal domain BG03_5338 PF00231 ATP synthase BG03_5339 PF02874 ATP synthase alpha/beta family, beta-barrel domain BG03_5339 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BG03_534 PF14602 Hexapeptide repeat of succinyl-transferase BG03_534 PF12464 Maltose acetyltransferase BG03_5340 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BG03_5340 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BG03_5343 PF03707 Bacterial signalling protein N terminal repeat BG03_5343 PF00990 Diguanylate cyclase, GGDEF domain BG03_5343 PF00563 EAL domain BG03_5344 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BG03_5345 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BG03_5346 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BG03_5347 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BG03_5348 PF00146 NADH dehydrogenase BG03_5350 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BG03_5351 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BG03_5352 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BG03_5352 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BG03_5352 PF00361 Proton-conducting membrane transporter BG03_5353 PF00361 Proton-conducting membrane transporter BG03_5354 PF00361 Proton-conducting membrane transporter BG03_5355 PF06612 Protein of unknown function (DUF1146) BG03_5357 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BG03_5358 PF08486 Stage II sporulation protein BG03_5359 PF00501 AMP-binding enzyme BG03_5359 PF13193 AMP-binding enzyme C-terminal domain BG03_536 PF08281 Sigma-70, region 4 BG03_536 PF04542 Sigma-70 region 2 BG03_5360 PF04397 LytTr DNA-binding domain BG03_5360 PF00072 Response regulator receiver domain BG03_5361 PF00005 ABC transporter BG03_5363 PF01551 Peptidase family M23 BG03_5364 PF12116 Stage III sporulation protein D BG03_5366 PF01467 Cytidylyltransferase-like BG03_5367 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BG03_5368 PF00535 Glycosyl transferase family 2 BG03_5368 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BG03_5369 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BG03_5369 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BG03_5370 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BG03_5371 PF01061 ABC-2 type transporter BG03_5372 PF00005 ABC transporter BG03_5372 PF08239 Bacterial SH3 domain BG03_5373 PF00534 Glycosyl transferases group 1 BG03_5373 PF09318 Glycosyl transferase 1 domain A BG03_5375 PF07977 FabA-like domain BG03_5376 PF03816 Cell envelope-related transcriptional attenuator domain BG03_5378 PF16363 GDP-mannose 4,6 dehydratase BG03_5379 PF00486 Transcriptional regulatory protein, C terminal BG03_5379 PF00072 Response regulator receiver domain BG03_538 PF01479 S4 domain BG03_538 PF00579 tRNA synthetases class I (W and Y) BG03_5380 PF16736 Single Cache-like BG03_5380 PF00989 PAS fold BG03_5380 PF00512 His Kinase A (phospho-acceptor) domain BG03_5380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_5383 PF07690 Major Facilitator Superfamily BG03_5384 PF01385 Probable transposase BG03_5384 PF12323 Helix-turn-helix domain BG03_5384 PF07282 Putative transposase DNA-binding domain BG03_5386 PF00005 ABC transporter BG03_5387 PF02687 FtsX-like permease family BG03_5387 PF12704 MacB-like periplasmic core domain BG03_5388 PF04893 Yip1 domain BG03_5389 PF04893 Yip1 domain BG03_5390 PF04545 Sigma-70, region 4 BG03_5390 PF04542 Sigma-70 region 2 BG03_5396 PF00271 Helicase conserved C-terminal domain BG03_5396 PF00176 SNF2 family N-terminal domain BG03_5396 PF12419 SNF2 Helicase protein BG03_5397 PF04434 SWIM zinc finger BG03_54 PF04239 Protein of unknown function (DUF421) BG03_5402 PF01476 LysM domain BG03_5402 PF06725 3D domain BG03_5403 PF02028 BCCT, betaine/carnitine/choline family transporter BG03_5407 PF01773 Na+ dependent nucleoside transporter N-terminus BG03_5407 PF07662 Na+ dependent nucleoside transporter C-terminus BG03_5408 PF00877 NlpC/P60 family BG03_5408 PF01476 LysM domain BG03_5409 PF01063 Amino-transferase class IV BG03_5410 PF00884 Sulfatase BG03_5412 PF09988 Uncharacterized metal-binding protein (DUF2227) BG03_5414 PF02652 L-lactate permease BG03_5415 PF13667 ThiC-associated domain BG03_5415 PF01964 Radical SAM ThiC family BG03_5418 PF02322 Cytochrome bd terminal oxidase subunit II BG03_5419 PF01654 Cytochrome bd terminal oxidase subunit I BG03_542 PF01479 S4 domain BG03_542 PF00163 Ribosomal protein S4/S9 N-terminal domain BG03_5422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_5422 PF03466 LysR substrate binding domain BG03_5424 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_5426 PF00375 Sodium:dicarboxylate symporter family BG03_5427 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG03_5428 PF02378 Phosphotransferase system, EIIC BG03_5429 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG03_543 PF01053 Cys/Met metabolism PLP-dependent enzyme BG03_5430 PF02675 S-adenosylmethionine decarboxylase BG03_5432 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG03_5433 PF02378 Phosphotransferase system, EIIC BG03_5434 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BG03_5435 PF11975 Family 4 glycosyl hydrolase C-terminal domain BG03_5435 PF02056 Family 4 glycosyl hydrolase BG03_5436 PF04794 YdjC-like protein BG03_544 PF13185 GAF domain BG03_5446 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BG03_5446 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BG03_5447 PF02447 GntP family permease BG03_5448 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BG03_5448 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BG03_5449 PF00392 Bacterial regulatory proteins, gntR family BG03_5449 PF07729 FCD domain BG03_545 PF00440 Bacterial regulatory proteins, tetR family BG03_5451 PF00561 alpha/beta hydrolase fold BG03_546 PF00892 EamA-like transporter family BG03_5462 PF04545 Sigma-70, region 4 BG03_5462 PF04539 Sigma-70 region 3 BG03_5462 PF04542 Sigma-70 region 2 BG03_5462 PF00140 Sigma-70 factor, region 1.2 BG03_5462 PF03979 Sigma-70 factor, region 1.1 BG03_5465 PF10502 Signal peptidase, peptidase S26 BG03_547 PF03466 LysR substrate binding domain BG03_547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BG03_5470 PF03838 Recombination protein U BG03_5479 PF07690 Major Facilitator Superfamily BG03_548 PF06160 Septation ring formation regulator, EzrA BG03_5480 PF13193 AMP-binding enzyme C-terminal domain BG03_5480 PF00550 Phosphopantetheine attachment site BG03_5480 PF00501 AMP-binding enzyme BG03_5480 PF00668 Condensation domain BG03_5481 PF07993 Male sterility protein BG03_5481 PF00668 Condensation domain BG03_5481 PF00501 AMP-binding enzyme BG03_5481 PF13193 AMP-binding enzyme C-terminal domain BG03_5481 PF00550 Phosphopantetheine attachment site BG03_5482 PF00501 AMP-binding enzyme BG03_5482 PF13193 AMP-binding enzyme C-terminal domain BG03_5482 PF00550 Phosphopantetheine attachment site BG03_5482 PF00668 Condensation domain BG03_5483 PF01648 4'-phosphopantetheinyl transferase superfamily BG03_5484 PF00975 Thioesterase domain BG03_5485 PF01734 Patatin-like phospholipase BG03_5485 PF00027 Cyclic nucleotide-binding domain BG03_5487 PF07282 Putative transposase DNA-binding domain BG03_5487 PF01385 Probable transposase BG03_5487 PF12323 Helix-turn-helix domain BG03_549 PF00266 Aminotransferase class-V BG03_5490 PF01156 Inosine-uridine preferring nucleoside hydrolase BG03_5493 PF01609 Transposase DDE domain BG03_5494 PF00440 Bacterial regulatory proteins, tetR family BG03_5498 PF03838 Recombination protein U BG03_550 PF02926 THUMP domain BG03_550 PF02568 Thiamine biosynthesis protein (ThiI) BG03_5509 PF00817 impB/mucB/samB family BG03_5509 PF11798 IMS family HHH motif BG03_5509 PF11799 impB/mucB/samB family C-terminal domain BG03_551 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG03_5513 PF00072 Response regulator receiver domain BG03_5513 PF00486 Transcriptional regulatory protein, C terminal BG03_5514 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_5515 PF00005 ABC transporter BG03_5516 PF02687 FtsX-like permease family BG03_5517 PF05857 TraX protein BG03_552 PF13193 AMP-binding enzyme C-terminal domain BG03_552 PF00501 AMP-binding enzyme BG03_5530 PF00269 Small, acid-soluble spore proteins, alpha/beta type BG03_5531 PF01609 Transposase DDE domain BG03_5532 PF01381 Helix-turn-helix BG03_5535 PF07859 alpha/beta hydrolase fold BG03_5538 PF00144 Beta-lactamase BG03_5539 PF00899 ThiF family BG03_554 PF07969 Amidohydrolase family BG03_5540 PF00581 Rhodanese-like domain BG03_5540 PF00899 ThiF family BG03_5541 PF04284 Protein of unknown function (DUF441) BG03_5543 PF00682 HMGL-like BG03_5545 PF02687 FtsX-like permease family BG03_5546 PF00005 ABC transporter BG03_5548 PF00072 Response regulator receiver domain BG03_5548 PF00486 Transcriptional regulatory protein, C terminal BG03_5549 PF16736 Single Cache-like BG03_5549 PF00512 His Kinase A (phospho-acceptor) domain BG03_5549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_5549 PF00989 PAS fold BG03_555 PF01513 ATP-NAD kinase BG03_5555 PF00882 Zinc dependent phospholipase C BG03_5556 PF00440 Bacterial regulatory proteins, tetR family BG03_5557 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BG03_5558 PF00155 Aminotransferase class I and II BG03_5559 PF00398 Ribosomal RNA adenine dimethylase BG03_5560 PF00005 ABC transporter BG03_5562 PF00109 Beta-ketoacyl synthase, N-terminal domain BG03_5562 PF02801 Beta-ketoacyl synthase, C-terminal domain BG03_5568 PF04239 Protein of unknown function (DUF421) BG03_557 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BG03_5571 PF07859 alpha/beta hydrolase fold BG03_5572 PF05504 Spore germination B3/ GerAC like, C-terminal BG03_5573 PF00355 Rieske [2Fe-2S] domain BG03_5575 PF01978 Sugar-specific transcriptional regulator TrmB BG03_5575 PF11495 Archaeal transcriptional regulator TrmB BG03_5578 PF01022 Bacterial regulatory protein, arsR family BG03_5579 PF17209 Hfq protein BG03_558 PF08534 Redoxin BG03_5582 PF01619 Proline dehydrogenase BG03_5587 PF07690 Major Facilitator Superfamily BG03_5588 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_5588 PF00395 S-layer homology domain BG03_5589 PF01520 N-acetylmuramoyl-L-alanine amidase BG03_5589 PF00395 S-layer homology domain BG03_559 PF02384 N-6 DNA Methylase BG03_5590 PF01381 Helix-turn-helix BG03_5592 PF01522 Polysaccharide deacetylase BG03_5595 PF03965 Penicillinase repressor BG03_5598 PF01381 Helix-turn-helix BG03_56 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG03_560 PF00871 Acetokinase family BG03_5600 PF00005 ABC transporter BG03_5602 PF00589 Phage integrase family BG03_5602 PF13495 Phage integrase, N-terminal SAM-like domain BG03_5604 PF02743 Cache domain BG03_5604 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_5604 PF00672 HAMP domain BG03_5605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BG03_5605 PF00672 HAMP domain BG03_5605 PF02743 Cache domain BG03_5607 PF12146 Serine aminopeptidase, S33 BG03_5607 PF13026 Protein of unknown function (DUF3887) BG03_5611 PF00144 Beta-lactamase BG03_5613 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BG03_5614 PF18416 N-acetylglucosamine binding protein domain 2 BG03_5614 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BG03_5616 PF03323 Bacillus/Clostridium GerA spore germination protein BG03_5619 PF00474 Sodium:solute symporter family BG03_5620 PF11755 Protein of unknown function (DUF3311) BG03_5621 PF07687 Peptidase dimerisation domain BG03_5621 PF01546 Peptidase family M20/M25/M40 BG03_5623 PF07282 Putative transposase DNA-binding domain BG03_5623 PF12323 Helix-turn-helix domain BG03_5623 PF01385 Probable transposase BG03_563 PF12787 EcsC protein family BG03_5630 PF04307 LexA-binding, inner membrane-associated putative hydrolase BG03_5634 PF00004 ATPase family associated with various cellular activities (AAA) BG03_5634 PF07724 AAA domain (Cdc48 subfamily) BG03_5634 PF17871 AAA lid domain BG03_5634 PF10431 C-terminal, D2-small domain, of ClpB protein BG03_5636 PF07282 Putative transposase DNA-binding domain BG03_5636 PF12323 Helix-turn-helix domain BG03_5636 PF01385 Probable transposase BG03_5637 PF00092 von Willebrand factor type A domain BG03_564 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_564 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_5645 PF13361 UvrD-like helicase C-terminal domain BG03_5645 PF00580 UvrD/REP helicase N-terminal domain BG03_5649 PF12169 DNA polymerase III subunits gamma and tau domain III BG03_5655 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BG03_5655 PF17854 FtsK alpha domain BG03_5655 PF09397 Ftsk gamma domain BG03_5655 PF01580 FtsK/SpoIIIE family BG03_5656 PF04962 KduI/IolB family BG03_5657 PF01116 Fructose-bisphosphate aldolase class-II BG03_5658 PF01261 Xylose isomerase-like TIM barrel BG03_5659 PF00205 Thiamine pyrophosphate enzyme, central domain BG03_5659 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BG03_5659 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BG03_5660 PF00171 Aldehyde dehydrogenase family BG03_5661 PF00294 pfkB family carbohydrate kinase BG03_5662 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BG03_5662 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BG03_5663 PF07690 Major Facilitator Superfamily BG03_5664 PF00356 Bacterial regulatory proteins, lacI family BG03_5666 PF13847 Methyltransferase domain BG03_5666 PF00069 Protein kinase domain BG03_5672 PF06114 IrrE N-terminal-like domain BG03_5672 PF01381 Helix-turn-helix BG03_5672 PF09856 Predicted transcriptional regulator (DUF2083) BG03_5674 PF04002 RadC-like JAB domain BG03_5676 PF12102 Domain of unknown function (DUF3578) BG03_5676 PF12102 Domain of unknown function (DUF3578) BG03_5676 PF07728 AAA domain (dynein-related subfamily) BG03_5676 PF07728 AAA domain (dynein-related subfamily) BG03_568 PF00764 Arginosuccinate synthase BG03_5686 PF01420 Type I restriction modification DNA specificity domain BG03_5688 PF13333 Integrase core domain BG03_5688 PF00665 Integrase core domain BG03_5688 PF13276 HTH-like domain BG03_569 PF00206 Lyase BG03_569 PF14698 Argininosuccinate lyase C-terminal BG03_5698 PF07693 KAP family P-loop domain BG03_57 PF07451 Stage V sporulation protein AD (SpoVAD) BG03_5708 PF00293 NUDIX domain BG03_5717 PF00293 NUDIX domain BG03_572 PF00582 Universal stress protein family BG03_5729 PF01757 Acyltransferase family BG03_5731 PF01580 FtsK/SpoIIIE family BG03_5731 PF17854 FtsK alpha domain BG03_5731 PF09397 Ftsk gamma domain BG03_5735 PF07486 Cell Wall Hydrolase BG03_5736 PF00072 Response regulator receiver domain BG03_5736 PF00196 Bacterial regulatory proteins, luxR family BG03_5737 PF07730 Histidine kinase BG03_5738 PF00216 Bacterial DNA-binding protein BG03_574 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BG03_574 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BG03_5741 PF00230 Major intrinsic protein BG03_5744 PF13610 DDE domain BG03_5745 PF10086 YhfC intramembrane metalloprotease BG03_5748 PF17418 Sporulation delaying protein SdpA BG03_576 PF01381 Helix-turn-helix BG03_5765 PF03613 PTS system mannose/fructose/sorbose family IID component BG03_5766 PF03609 PTS system sorbose-specific iic component BG03_5767 PF03830 PTS system sorbose subfamily IIB component BG03_5767 PF03610 PTS system fructose IIA component BG03_5768 PF01238 Phosphomannose isomerase type I BG03_5769 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG03_5769 PF02378 Phosphotransferase system, EIIC BG03_5769 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BG03_5770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BG03_5770 PF00874 PRD domain BG03_5770 PF05043 Mga helix-turn-helix domain BG03_5770 PF08279 HTH domain BG03_5771 PF00381 PTS HPr component phosphorylation site BG03_5774 PF00877 NlpC/P60 family BG03_578 PF07883 Cupin domain BG03_579 PF12746 GNAT acetyltransferase BG03_58 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BG03_581 PF08281 Sigma-70, region 4 BG03_581 PF04542 Sigma-70 region 2 BG03_586 PF11518 Protein of unknown function (DUF3221) BG03_587 PF01321 Creatinase/Prolidase N-terminal domain BG03_587 PF00557 Metallopeptidase family M24 BG03_590 PF00392 Bacterial regulatory proteins, gntR family BG03_590 PF07085 DRTGG domain BG03_590 PF00571 CBS domain BG03_590 PF03061 Thioesterase superfamily BG03_592 PF01636 Phosphotransferase enzyme family BG03_594 PF14007 YtpI-like protein BG03_595 PF02272 DHHA1 domain BG03_595 PF01368 DHH family BG03_597 PF14034 Sporulation protein YtrH BG03_598 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BG03_598 PF07733 Bacterial DNA polymerase III alpha NTPase domain BG03_598 PF14579 Helix-hairpin-helix motif BG03_598 PF01336 OB-fold nucleic acid binding domain BG03_598 PF02811 PHP domain BG03_599 PF00390 Malic enzyme, N-terminal domain BG03_599 PF03949 Malic enzyme, NAD binding domain BG03_6 PF02350 UDP-N-acetylglucosamine 2-epimerase BG03_600 PF00392 Bacterial regulatory proteins, gntR family BG03_601 PF17848 Acetyl-coA carboxylase zinc finger domain BG03_601 PF01039 Carboxyl transferase domain BG03_602 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BG03_603 PF00365 Phosphofructokinase BG03_604 PF00391 PEP-utilising enzyme, mobile domain BG03_604 PF02887 Pyruvate kinase, alpha/beta domain BG03_604 PF00224 Pyruvate kinase, barrel domain BG03_605 PF04186 FxsA cytoplasmic membrane protein BG03_606 PF01594 AI-2E family transporter BG03_607 PF04284 Protein of unknown function (DUF441) BG03_608 PF00285 Citrate synthase, C-terminal domain BG03_609 PF00180 Isocitrate/isopropylmalate dehydrogenase BG03_61 PF02899 Phage integrase, N-terminal SAM-like domain BG03_61 PF00589 Phage integrase family BG03_610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BG03_610 PF00056 lactate/malate dehydrogenase, NAD binding domain BG03_614 PF00486 Transcriptional regulatory protein, C terminal BG03_614 PF00072 Response regulator receiver domain BG03_615 PF16736 Single Cache-like BG03_615 PF00989 PAS fold BG03_615 PF00512 His Kinase A (phospho-acceptor) domain BG03_615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_616 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BG03_616 PF00476 DNA polymerase family A BG03_616 PF01367 5'-3' exonuclease, C-terminal SAM fold BG03_617 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BG03_617 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BG03_617 PF06827 Zinc finger found in FPG and IleRS BG03_618 PF02659 Putative manganese efflux pump BG03_619 PF01121 Dephospho-CoA kinase BG03_620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BG03_620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BG03_622 PF02675 S-adenosylmethionine decarboxylase BG03_623 PF03477 ATP cone domain BG03_624 PF07261 Replication initiation and membrane attachment BG03_625 PF01695 IstB-like ATP binding protein BG03_625 PF07319 Primosomal protein DnaI N-terminus BG03_626 PF08812 YtxC-like family BG03_627 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG03_627 PF02824 TGS domain BG03_627 PF03129 Anticodon binding domain BG03_627 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BG03_628 PF05198 Translation initiation factor IF-3, N-terminal domain BG03_628 PF00707 Translation initiation factor IF-3, C-terminal domain BG03_629 PF01632 Ribosomal protein L35 BG03_630 PF00453 Ribosomal protein L20 BG03_632 PF05343 M42 glutamyl aminopeptidase BG03_633 PF16859 Tetracyclin repressor-like, C-terminal domain BG03_633 PF00440 Bacterial regulatory proteins, tetR family BG03_635 PF07690 Major Facilitator Superfamily BG03_637 PF01966 HD domain BG03_638 PF14098 Small, acid-soluble spore protein I BG03_639 PF00588 SpoU rRNA Methylase family BG03_639 PF08032 RNA 2'-O ribose methyltransferase substrate binding BG03_640 PF01409 tRNA synthetases class II core domain (F) BG03_640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BG03_641 PF03483 B3/4 domain BG03_641 PF03484 tRNA synthetase B5 domain BG03_641 PF03147 Ferredoxin-fold anticodon binding domain BG03_641 PF01588 Putative tRNA binding domain BG03_641 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BG03_642 PF01336 OB-fold nucleic acid binding domain BG03_642 PF00152 tRNA synthetases class II (D, K and N) BG03_645 PF00004 ATPase family associated with various cellular activities (AAA) BG03_645 PF17866 AAA lid domain BG03_647 PF00012 Hsp70 protein BG03_649 PF00226 DnaJ domain BG03_649 PF01556 DnaJ C terminal domain BG03_649 PF00684 DnaJ central domain BG03_650 PF11858 Domain of unknown function (DUF3378) BG03_650 PF01351 Ribonuclease HII BG03_651 PF05164 Cell division protein ZapA BG03_652 PF02674 Colicin V production protein BG03_653 PF02811 PHP domain BG03_653 PF14716 Helix-hairpin-helix domain BG03_653 PF14791 DNA polymerase beta thumb BG03_654 PF00488 MutS domain V BG03_654 PF01713 Smr domain BG03_656 PF00849 RNA pseudouridylate synthase BG03_656 PF01479 S4 domain BG03_657 PF05525 Branched-chain amino acid transport protein BG03_658 PF05031 Iron Transport-associated domain BG03_66 PF00589 Phage integrase family BG03_660 PF05031 Iron Transport-associated domain BG03_661 PF01497 Periplasmic binding protein BG03_662 PF01032 FecCD transport family BG03_663 PF00005 ABC transporter BG03_664 PF04203 Sortase domain BG03_665 PF03992 Antibiotic biosynthesis monooxygenase BG03_666 PF10672 S-adenosylmethionine-dependent methyltransferase BG03_666 PF17785 PUA-like domain BG03_667 PF09962 Uncharacterized conserved protein (DUF2196) BG03_669 PF00072 Response regulator receiver domain BG03_669 PF00486 Transcriptional regulatory protein, C terminal BG03_670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_670 PF00512 His Kinase A (phospho-acceptor) domain BG03_671 PF00005 ABC transporter BG03_677 PF05163 DinB family BG03_679 PF13193 AMP-binding enzyme C-terminal domain BG03_679 PF00501 AMP-binding enzyme BG03_680 PF08359 YsiA-like protein, C-terminal region BG03_680 PF00440 Bacterial regulatory proteins, tetR family BG03_681 PF00378 Enoyl-CoA hydratase/isomerase BG03_682 PF01012 Electron transfer flavoprotein domain BG03_683 PF00766 Electron transfer flavoprotein FAD-binding domain BG03_683 PF01012 Electron transfer flavoprotein domain BG03_684 PF00085 Thioredoxin BG03_685 PF01541 GIY-YIG catalytic domain BG03_685 PF02151 UvrB/uvrC motif BG03_685 PF08459 UvrC Helix-hairpin-helix N-terminal BG03_686 PF10702 Protein of unknown function (DUF2507) BG03_687 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BG03_688 PF02910 Fumarate reductase flavoprotein C-term BG03_688 PF00890 FAD binding domain BG03_689 PF13183 4Fe-4S dicluster domain BG03_689 PF13085 2Fe-2S iron-sulfur cluster binding domain BG03_690 PF03061 Thioesterase superfamily BG03_691 PF02557 D-alanyl-D-alanine carboxypeptidase BG03_692 PF01618 MotA/TolQ/ExbB proton channel family BG03_693 PF13677 Membrane MotB of proton-channel complex MotA/MotB BG03_693 PF00691 OmpA family BG03_694 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BG03_695 PF00005 ABC transporter BG03_695 PF13732 Domain of unknown function (DUF4162) BG03_697 PF02082 Transcriptional regulator BG03_698 PF00230 Major intrinsic protein BG03_699 PF13536 Putative multidrug resistance efflux transporter BG03_7 PF03816 Cell envelope-related transcriptional attenuator domain BG03_700 PF01381 Helix-turn-helix BG03_700 PF07883 Cupin domain BG03_701 PF04024 PspC domain BG03_702 PF07969 Amidohydrolase family BG03_703 PF00860 Permease family BG03_704 PF00196 Bacterial regulatory proteins, luxR family BG03_707 PF00440 Bacterial regulatory proteins, tetR family BG03_709 PF07690 Major Facilitator Superfamily BG03_710 PF01177 Asp/Glu/Hydantoin racemase BG03_711 PF10646 Sporulation and spore germination BG03_712 PF01138 3' exoribonuclease family, domain 1 BG03_712 PF03725 3' exoribonuclease family, domain 2 BG03_713 PF01725 Ham1 family BG03_714 PF12850 Calcineurin-like phosphoesterase superfamily domain BG03_718 PF08000 Bacterial PH domain BG03_718 PF11724 YvbH-like oligomerisation region BG03_722 PF05698 Bacterial trigger factor protein (TF) C-terminus BG03_722 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BG03_722 PF05697 Bacterial trigger factor protein (TF) BG03_723 PF06689 ClpX C4-type zinc finger BG03_723 PF10431 C-terminal, D2-small domain, of ClpB protein BG03_723 PF07724 AAA domain (Cdc48 subfamily) BG03_724 PF05362 Lon protease (S16) C-terminal proteolytic domain BG03_724 PF00004 ATPase family associated with various cellular activities (AAA) BG03_725 PF05362 Lon protease (S16) C-terminal proteolytic domain BG03_725 PF02190 ATP-dependent protease La (LON) substrate-binding domain BG03_725 PF00004 ATPase family associated with various cellular activities (AAA) BG03_726 PF01926 50S ribosome-binding GTPase BG03_727 PF02566 OsmC-like protein BG03_728 PF01047 MarR family BG03_729 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BG03_729 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BG03_729 PF01488 Shikimate / quinate 5-dehydrogenase BG03_730 PF01578 Cytochrome C assembly protein BG03_731 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BG03_731 PF03900 Porphobilinogen deaminase, C-terminal domain BG03_732 PF02602 Uroporphyrinogen-III synthase HemD BG03_733 PF00490 Delta-aminolevulinic acid dehydratase BG03_734 PF00202 Aminotransferase class-III BG03_735 PF01476 LysM domain BG03_737 PF10458 Valyl tRNA synthetase tRNA binding arm BG03_737 PF08264 Anticodon-binding domain of tRNA BG03_737 PF00133 tRNA synthetases class I (I, L, M and V) BG03_738 PF08245 Mur ligase middle domain BG03_738 PF02875 Mur ligase family, glutamate ligase domain BG03_740 PF02545 Maf-like protein BG03_741 PF04002 RadC-like JAB domain BG03_743 PF04085 rod shape-determining protein MreC BG03_745 PF03775 Septum formation inhibitor MinC, C-terminal domain BG03_746 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BG03_747 PF01551 Peptidase family M23 BG03_748 PF02163 Peptidase family M50 BG03_749 PF10150 Ribonuclease E/G family BG03_749 PF00575 S1 RNA binding domain BG03_75 PF04552 Sigma-54, DNA binding domain BG03_75 PF00309 Sigma-54 factor, Activator interacting domain (AID) BG03_75 PF04963 Sigma-54 factor, core binding domain BG03_750 PF00829 Ribosomal prokaryotic L21 protein BG03_751 PF04327 Cysteine protease Prp BG03_752 PF01016 Ribosomal L27 protein BG03_753 PF14682 Sporulation initiation phospho-transferase B, C-terminal BG03_753 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BG03_754 PF09269 Domain of unknown function (DUF1967) BG03_754 PF01018 GTP1/OBG BG03_754 PF01926 50S ribosome-binding GTPase BG03_755 PF00072 Response regulator receiver domain BG03_755 PF00486 Transcriptional regulatory protein, C terminal BG03_756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BG03_757 PF00005 ABC transporter BG03_758 PF02687 FtsX-like permease family BG03_759 PF02687 FtsX-like permease family BG03_760 PF00800 Prephenate dehydratase BG03_760 PF01842 ACT domain BG03_761 PF03475 3-alpha domain BG03_761 PF03473 MOSC domain BG03_762 PF08279 HTH domain BG03_762 PF02829 3H domain BG03_763 PF00266 Aminotransferase class-V BG03_764 PF00890 FAD binding domain BG03_764 PF02910 Fumarate reductase flavoprotein C-term BG03_765 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BG03_765 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BG03_766 PF02445 Quinolinate synthetase A protein BG03_767 PF01476 LysM domain BG03_77 PF04198 Putative sugar-binding domain BG03_770 PF01022 Bacterial regulatory protein, arsR family BG03_771 PF00892 EamA-like transporter family BG03_773 PF01497 Periplasmic binding protein BG03_774 PF01330 RuvA N terminal domain BG03_774 PF07499 RuvA, C-terminal domain BG03_775 PF17864 RuvB AAA lid domain BG03_775 PF05491 RuvB C-terminal winged helix domain BG03_775 PF05496 Holliday junction DNA helicase RuvB P-loop domain BG03_776 PF11146 Protein of unknown function (DUF2905) BG03_777 PF02547 Queuosine biosynthesis protein BG03_778 PF01702 Queuine tRNA-ribosyltransferase BG03_779 PF02699 Preprotein translocase subunit BG03_78 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BG03_78 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BG03_781 PF04239 Protein of unknown function (DUF421) BG03_782 PF01943 Polysaccharide biosynthesis protein BG03_782 PF14667 Polysaccharide biosynthesis C-terminal domain BG03_783 PF13797 Post-transcriptional regulator BG03_784 PF02355 Protein export membrane protein BG03_784 PF07549 SecD/SecF GG Motif BG03_785 PF01545 Cation efflux family BG03_785 PF16916 Dimerisation domain of Zinc Transporter BG03_786 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BG03_786 PF17768 RecJ OB domain BG03_786 PF02272 DHHA1 domain BG03_786 PF01368 DHH family BG03_787 PF00156 Phosphoribosyl transferase domain BG03_788 PF02824 TGS domain BG03_788 PF04607 Region found in RelA / SpoT proteins BG03_788 PF13291 ACT domain BG03_789 PF02580 D-Tyr-tRNA(Tyr) deacylase BG03_79 PF00162 Phosphoglycerate kinase BG03_791 PF13393 Histidyl-tRNA synthetase BG03_791 PF03129 Anticodon binding domain BG03_792 PF00152 tRNA synthetases class II (D, K and N) BG03_792 PF02938 GAD domain BG03_792 PF01336 OB-fold nucleic acid binding domain BG03_793 PF00899 ThiF family BG03_795 PF17866 AAA lid domain BG03_795 PF00004 ATPase family associated with various cellular activities (AAA) BG03_796 PF16193 AAA C-terminal domain BG03_796 PF05496 Holliday junction DNA helicase RuvB P-loop domain BG03_796 PF12002 MgsA AAA+ ATPase C terminal BG03_797 PF02082 Transcriptional regulator BG03_798 PF00266 Aminotransferase class-V BG03_8 PF09186 Domain of unknown function (DUF1949) BG03_8 PF01205 Uncharacterized protein family UPF0029 BG03_80 PF00121 Triosephosphate isomerase BG03_801 PF14490 Helix-hairpin-helix containing domain BG03_801 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BG03_801 PF13538 UvrD-like helicase C-terminal domain BG03_805 PF01594 AI-2E family transporter BG03_807 PF02272 DHHA1 domain BG03_807 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BG03_807 PF01411 tRNA synthetases class II (A) BG03_808 PF06135 IreB regulatory phosphoprotein BG03_809 PF03652 Holliday junction resolvase BG03_81 PF01676 Metalloenzyme superfamily BG03_81 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BG03_810 PF06949 Protein of unknown function (DUF1292) BG03_811 PF02618 YceG-like family BG03_815 PF00485 Phosphoribulokinase / Uridine kinase family BG03_816 PF01272 Transcription elongation factor, GreA/GreB, C-term BG03_816 PF03449 Transcription elongation factor, N-terminal BG03_817 PF03717 Penicillin-binding Protein dimerisation domain BG03_817 PF00905 Penicillin binding protein transpeptidase domain BG03_82 PF00113 Enolase, C-terminal TIM barrel domain BG03_82 PF03952 Enolase, N-terminal domain BG03_820 PF08241 Methyltransferase domain BG03_821 PF01048 Phosphorylase superfamily BG03_822 PF00291 Pyridoxal-phosphate dependent enzyme BG03_823 PF01053 Cys/Met metabolism PLP-dependent enzyme BG03_824 PF00465 Iron-containing alcohol dehydrogenase BG03_824 PF00171 Aldehyde dehydrogenase family BG03_825 PF14143 YrhC-like protein BG03_826 PF01497 Periplasmic binding protein BG03_827 PF01032 FecCD transport family BG03_828 PF00005 ABC transporter BG03_83 PF01156 Inosine-uridine preferring nucleoside hydrolase BG03_834 PF07681 DoxX BG03_835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BG03_837 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BG03_838 PF13860 FlgD Ig-like domain BG03_838 PF05922 Peptidase inhibitor I9 BG03_838 PF00082 Subtilase family BG03_838 PF02225 PA domain BG03_84 PF03788 LrgA family BG03_846 PF08386 TAP-like protein BG03_846 PF00561 alpha/beta hydrolase fold BG03_848 PF00245 Alkaline phosphatase BG03_85 PF04172 LrgB-like family BG03_850 PF04607 Region found in RelA / SpoT proteins BG03_851 PF00881 Nitroreductase family BG03_852 PF00471 Ribosomal protein L33 BG03_853 PF16244 Domain of unknown function (DUF4901) BG03_855 PF04542 Sigma-70 region 2 BG03_855 PF04545 Sigma-70, region 4 BG03_856 PF02666 Phosphatidylserine decarboxylase BG03_859 PF01926 50S ribosome-binding GTPase BG03_86 PF03840 Preprotein translocase SecG subunit BG03_860 PF08501 Shikimate dehydrogenase substrate binding domain BG03_860 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BG03_860 PF01488 Shikimate / quinate 5-dehydrogenase BG03_861 PF01985 CRS1 / YhbY (CRM) domain BG03_862 PF01467 Cytidylyltransferase-like BG03_863 PF01966 HD domain BG03_865 PF13649 Methyltransferase domain BG03_866 PF03807 NADP oxidoreductase coenzyme F420-dependent BG03_866 PF14748 Pyrroline-5-carboxylate reductase dimerisation BG03_867 PF10531 SLBB domain BG03_868 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG03_869 PF00753 Metallo-beta-lactamase superfamily BG03_869 PF03772 Competence protein BG03_869 PF13567 Domain of unknown function (DUF4131) BG03_87 PF12146 Serine aminopeptidase, S33 BG03_870 PF14141 YqzM-like protein BG03_871 PF06144 DNA polymerase III, delta subunit BG03_872 PF01649 Ribosomal protein S20 BG03_873 PF03418 Germination protease BG03_875 PF06421 GTP-binding protein LepA C-terminus BG03_875 PF03144 Elongation factor Tu domain 2 BG03_875 PF00009 Elongation factor Tu GTP binding domain BG03_875 PF00679 Elongation factor G C-terminus BG03_876 PF01638 HxlR-like helix-turn-helix BG03_877 PF06969 HemN C-terminal domain BG03_877 PF04055 Radical SAM superfamily BG03_878 PF01628 HrcA protein C terminal domain BG03_879 PF01025 GrpE BG03_88 PF00575 S1 RNA binding domain BG03_88 PF00773 RNB domain BG03_88 PF08206 Ribonuclease B OB domain BG03_88 PF17876 Cold shock domain BG03_880 PF00012 Hsp70 protein BG03_881 PF00684 DnaJ central domain BG03_881 PF01556 DnaJ C terminal domain BG03_881 PF00226 DnaJ domain BG03_883 PF04452 RNA methyltransferase BG03_884 PF04055 Radical SAM superfamily BG03_884 PF00919 Uncharacterized protein family UPF0004 BG03_884 PF01938 TRAM domain BG03_885 PF01165 Ribosomal protein S21 BG03_886 PF09424 Yqey-like protein BG03_887 PF07873 YabP family BG03_888 PF06898 Putative stage IV sporulation protein YqfD BG03_889 PF02562 PhoH-like protein BG03_89 PF01668 SmpB protein BG03_890 PF01966 HD domain BG03_890 PF07697 7TM-HD extracellular BG03_890 PF07698 7TM receptor with intracellular HD hydrolase BG03_891 PF02130 Uncharacterized protein family UPF0054 BG03_892 PF01219 Prokaryotic diacylglycerol kinase BG03_893 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BG03_894 PF01926 50S ribosome-binding GTPase BG03_894 PF07650 KH domain BG03_896 PF11967 Recombination protein O N terminal BG03_896 PF02565 Recombination protein O C terminal BG03_897 PF00571 CBS domain BG03_897 PF08279 HTH domain BG03_898 PF03618 Kinase/pyrophosphorylase BG03_899 PF10410 DnaB-helicase binding domain of primase BG03_899 PF01807 CHC2 zinc finger BG03_899 PF08275 DNA primase catalytic core, N-terminal domain BG03_9 PF02645 Uncharacterised protein, DegV family COG1307 BG03_900 PF04545 Sigma-70, region 4 BG03_900 PF03979 Sigma-70 factor, region 1.1 BG03_900 PF04542 Sigma-70 region 2 BG03_900 PF00140 Sigma-70 factor, region 1.2 BG03_900 PF04539 Sigma-70 region 3 BG03_901 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BG03_902 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BG03_903 PF01784 NIF3 (NGG1p interacting factor 3) BG03_904 PF02401 LytB protein BG03_906 PF00270 DEAD/DEAH box helicase BG03_906 PF00271 Helicase conserved C-terminal domain BG03_907 PF01261 Xylose isomerase-like TIM barrel BG03_908 PF11116 Protein of unknown function (DUF2624) BG03_909 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BG03_909 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BG03_91 PF00072 Response regulator receiver domain BG03_91 PF00486 Transcriptional regulatory protein, C terminal BG03_910 PF00005 ABC transporter BG03_911 PF00950 ABC 3 transport family BG03_912 PF01475 Ferric uptake regulator family BG03_913 PF04551 GcpE protein BG03_917 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BG03_917 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BG03_918 PF07690 Major Facilitator Superfamily BG03_920 PF12849 PBP superfamily domain BG03_921 PF00528 Binding-protein-dependent transport system inner membrane component BG03_922 PF00528 Binding-protein-dependent transport system inner membrane component BG03_923 PF00005 ABC transporter BG03_924 PF01895 PhoU domain BG03_925 PF00483 Nucleotidyl transferase BG03_926 PF00471 Ribosomal protein L33 BG03_927 PF01812 5-formyltetrahydrofolate cyclo-ligase family BG03_928 PF06014 Bacterial protein of unknown function (DUF910) BG03_929 PF00480 ROK family BG03_93 PF01032 FecCD transport family BG03_930 PF10958 Protein of unknown function (DUF2759) BG03_931 PF00753 Metallo-beta-lactamase superfamily BG03_933 PF01022 Bacterial regulatory protein, arsR family BG03_935 PF01053 Cys/Met metabolism PLP-dependent enzyme BG03_936 PF01053 Cys/Met metabolism PLP-dependent enzyme BG03_937 PF02219 Methylenetetrahydrofolate reductase BG03_937 PF02574 Homocysteine S-methyltransferase BG03_938 PF02574 Homocysteine S-methyltransferase BG03_938 PF00809 Pterin binding enzyme BG03_938 PF02965 Vitamin B12 dependent methionine synthase, activation domain BG03_938 PF02607 B12 binding domain BG03_938 PF02310 B12 binding domain BG03_939 PF03033 Glycosyltransferase family 28 N-terminal domain BG03_939 PF04101 Glycosyltransferase family 28 C-terminal domain BG03_94 PF01032 FecCD transport family BG03_945 PF00375 Sodium:dicarboxylate symporter family BG03_946 PF11117 Protein of unknown function (DUF2626) BG03_948 PF00437 Type II/IV secretion system protein BG03_95 PF00005 ABC transporter BG03_952 PF00239 Resolvase, N terminal domain BG03_952 PF02796 Helix-turn-helix domain of resolvase BG03_96 PF06146 Phosphate-starvation-inducible E BG03_961 PF00437 Type II/IV secretion system protein BG03_962 PF00482 Type II secretion system (T2SS), protein F BG03_964 PF07963 Prokaryotic N-terminal methylation motif BG03_969 PF01202 Shikimate kinase BG03_970 PF14038 YqzE-like protein BG03_975 PF11079 Bacterial protein YqhG of unknown function BG03_976 PF00271 Helicase conserved C-terminal domain BG03_976 PF00176 SNF2 family N-terminal domain BG03_977 PF01571 Aminomethyltransferase folate-binding domain BG03_977 PF08669 Glycine cleavage T-protein C-terminal barrel domain BG03_978 PF02347 Glycine cleavage system P-protein BG03_979 PF02347 Glycine cleavage system P-protein BG03_982 PF00392 Bacterial regulatory proteins, gntR family BG03_983 PF00005 ABC transporter BG03_990 PF00893 Small Multidrug Resistance protein BG03_991 PF00893 Small Multidrug Resistance protein BG03_993 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BG03_993 PF00356 Bacterial regulatory proteins, lacI family BG03_995 PF00581 Rhodanese-like domain BG03_996 PF03099 Biotin/lipoate A/B protein ligase family