AQ16_1001 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AQ16_1003 SM00422 helix_turn_helix, mercury resistance AQ16_1005 SM00257 Lysin motif AQ16_1007 SM00487 DEAD-like helicases superfamily AQ16_1007 SM00490 helicase superfamily c-terminal domain AQ16_1012 SM00257 Lysin motif AQ16_1014 SM00091 PAS domain AQ16_1014 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1014 SM00387 Histidine kinase-like ATPases AQ16_1014 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1015 SM00448 cheY-homologous receiver domain AQ16_1015 SM00862 Transcriptional regulatory protein, C terminal AQ16_1019 SM00363 S4 RNA-binding domain AQ16_1030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1030 SM00387 Histidine kinase-like ATPases AQ16_1030 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1034 SM00387 Histidine kinase-like ATPases AQ16_1034 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1052 SM00421 helix_turn_helix, Lux Regulon AQ16_1052 SM00448 cheY-homologous receiver domain AQ16_1053 SM00387 Histidine kinase-like ATPases AQ16_108 SM00855 Phosphoglycerate mutase family AQ16_1089 SM01329 AQ16_1089 AQ16_109 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1090 SM00917 LeuA allosteric (dimerisation) domain AQ16_11 SM01209 AQ16_11 AQ16_1103 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1127 SM00344 helix_turn_helix ASNC type AQ16_1131 SM00382 ATPases associated with a variety of cellular activities AQ16_1133 SM00382 ATPases associated with a variety of cellular activities AQ16_1134 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_114 SM00382 ATPases associated with a variety of cellular activities AQ16_1149 SM00387 Histidine kinase-like ATPases AQ16_1149 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1153 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1154 SM00387 Histidine kinase-like ATPases AQ16_1154 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1158 SM01007 Class II Aldolase and Adducin N-terminal domain AQ16_1159 SM00365 Leucine-rich repeat, SDS22-like subfamily AQ16_1159 SM00369 Leucine-rich repeats, typical (most populated) subfamily AQ16_1159 SM00725 NEAr Transporter domain AQ16_1161 SM00420 helix_turn_helix, Deoxyribose operon repressor AQ16_1161 SM01134 AQ16_1161 AQ16_1166 SM00382 ATPases associated with a variety of cellular activities AQ16_1173 SM00822 AQ16_1173 AQ16_1187 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_1187 SM00895 AQ16_1187 AQ16_1188 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1188 SM00387 Histidine kinase-like ATPases AQ16_1188 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1189 SM00448 cheY-homologous receiver domain AQ16_1189 SM00862 Transcriptional regulatory protein, C terminal AQ16_1199 SM00014 Acid phosphatase homologues AQ16_12 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_1203 SM00382 ATPases associated with a variety of cellular activities AQ16_1208 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1223 SM00857 Resolvase, N terminal domain AQ16_123 SM00487 DEAD-like helicases superfamily AQ16_123 SM00490 helicase superfamily c-terminal domain AQ16_1237 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1238 SM00861 Transketolase, pyrimidine binding domain AQ16_1248 SM01324 AQ16_1248 AQ16_1263 SM00100 Cyclic nucleotide-monophosphate binding domain AQ16_127 SM00849 Metallo-beta-lactamase superfamily AQ16_1293 SM00954 Region found in RelA / SpoT proteins AQ16_1295 SM01118 AQ16_1295 AQ16_1301 SM00155 Phospholipase D. Active site motifs. AQ16_1308 SM00382 ATPases associated with a variety of cellular activities AQ16_1309 SM00382 ATPases associated with a variety of cellular activities AQ16_1317 SM00825 Beta-ketoacyl synthase AQ16_132 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1324 SM00382 ATPases associated with a variety of cellular activities AQ16_1324 SM01086 C-terminal, D2-small domain, of ClpB protein AQ16_1338 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_1340 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1342 SM00642 Alpha-amylase domain AQ16_1344 SM01060 AQ16_1344 AQ16_135 SM01207 AQ16_135 AQ16_1368 SM00357 Cold shock protein domain AQ16_1381 SM00448 cheY-homologous receiver domain AQ16_1381 SM00862 Transcriptional regulatory protein, C terminal AQ16_1382 SM00387 Histidine kinase-like ATPases AQ16_1382 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1385 SM00342 helix_turn_helix, arabinose operon control protein AQ16_1385 SM00871 Bacterial transcription activator, effector binding domain AQ16_1388 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_1397 SM00849 Metallo-beta-lactamase superfamily AQ16_1399 SM00354 helix_turn _helix lactose operon repressor AQ16_1425 SM00382 ATPases associated with a variety of cellular activities AQ16_1428 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_1458 SM00829 Enoylreductase AQ16_1467 SM00387 Histidine kinase-like ATPases AQ16_1467 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1467 SM00448 cheY-homologous receiver domain AQ16_1468 SM00138 Methyltransferase, chemotaxis proteins AQ16_1469 SM00331 Sigma factor PP2C-like phosphatases AQ16_1469 SM00448 cheY-homologous receiver domain AQ16_1487 SM00460 Transglutaminase/protease-like homologues AQ16_1489 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_149 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_1492 SM00028 Tetratricopeptide repeats AQ16_1494 SM01120 AQ16_1494 AQ16_150 SM00835 Cupin AQ16_1501 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1516 SM00382 ATPases associated with a variety of cellular activities AQ16_1535 SM00382 ATPases associated with a variety of cellular activities AQ16_154 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1541 SM00448 cheY-homologous receiver domain AQ16_1542 SM00091 PAS domain AQ16_1542 SM00387 Histidine kinase-like ATPases AQ16_1549 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1553 SM00287 Bacterial SH3 domain homologues AQ16_1553 SM00644 AQ16_1553 AQ16_156 SM00646 AQ16_156 AQ16_1574 SM00646 AQ16_1574 AQ16_158 SM00382 ATPases associated with a variety of cellular activities AQ16_1587 SM00957 SecA DEAD-like domain AQ16_1587 SM00958 SecA preprotein cross-linking domain AQ16_159 SM00382 ATPases associated with a variety of cellular activities AQ16_1594 SM00422 helix_turn_helix, mercury resistance AQ16_1599 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_1600 SM00644 AQ16_1600 AQ16_1617 SM00382 ATPases associated with a variety of cellular activities AQ16_1619 SM00062 Bacterial periplasmic substrate-binding proteins AQ16_1619 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AQ16_1620 SM00382 ATPases associated with a variety of cellular activities AQ16_1621 SM00382 ATPases associated with a variety of cellular activities AQ16_1633 SM00849 Metallo-beta-lactamase superfamily AQ16_1635 SM00382 ATPases associated with a variety of cellular activities AQ16_1637 SM00382 ATPases associated with a variety of cellular activities AQ16_1639 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1639 SM00387 Histidine kinase-like ATPases AQ16_1639 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1640 SM00448 cheY-homologous receiver domain AQ16_1640 SM00862 Transcriptional regulatory protein, C terminal AQ16_1646 SM00422 helix_turn_helix, mercury resistance AQ16_1649 SM00344 helix_turn_helix ASNC type AQ16_1669 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AQ16_167 SM00859 Semialdehyde dehydrogenase, NAD binding domain AQ16_1681 SM00382 ATPases associated with a variety of cellular activities AQ16_1683 SM00287 Bacterial SH3 domain homologues AQ16_1693 SM00829 Enoylreductase AQ16_1698 SM00450 Rhodanese Homology Domain AQ16_1699 SM00450 Rhodanese Homology Domain AQ16_1703 SM00450 Rhodanese Homology Domain AQ16_1703 SM00849 Metallo-beta-lactamase superfamily AQ16_1704 SM00450 Rhodanese Homology Domain AQ16_1706 SM00450 Rhodanese Homology Domain AQ16_1728 SM00382 ATPases associated with a variety of cellular activities AQ16_1733 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_174 SM00357 Cold shock protein domain AQ16_1751 SM00382 ATPases associated with a variety of cellular activities AQ16_1753 SM00287 Bacterial SH3 domain homologues AQ16_1756 SM00116 Domain in cystathionine beta-synthase and other proteins. AQ16_1787 SM00899 AQ16_1787 AQ16_18 SM00382 ATPases associated with a variety of cellular activities AQ16_1805 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1814 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1816 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_182 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1823 SM00770 Zinc dependent phospholipase C (alpha toxin) AQ16_1825 SM00829 Enoylreductase AQ16_1831 SM00382 ATPases associated with a variety of cellular activities AQ16_1834 SM00354 helix_turn _helix lactose operon repressor AQ16_1836 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1838 SM00382 ATPases associated with a variety of cellular activities AQ16_1839 SM00382 ATPases associated with a variety of cellular activities AQ16_1847 SM00448 cheY-homologous receiver domain AQ16_1847 SM00862 Transcriptional regulatory protein, C terminal AQ16_1848 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1848 SM00387 Histidine kinase-like ATPases AQ16_1848 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1858 SM00062 Bacterial periplasmic substrate-binding proteins AQ16_1858 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AQ16_1859 SM00382 ATPases associated with a variety of cellular activities AQ16_186 SM01059 Chloramphenicol acetyltransferase AQ16_1864 SM00421 helix_turn_helix, Lux Regulon AQ16_1864 SM00448 cheY-homologous receiver domain AQ16_1865 SM00387 Histidine kinase-like ATPases AQ16_1870 SM00642 Alpha-amylase domain AQ16_1872 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_1872 SM00866 AQ16_1872 AQ16_1874 SM00052 Putative diguanylate phosphodiesterase AQ16_1874 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AQ16_1874 SM00267 diguanylate cyclase AQ16_1877 SM00155 Phospholipase D. Active site motifs. AQ16_1878 SM00382 ATPases associated with a variety of cellular activities AQ16_1879 SM00327 von Willebrand factor (vWF) type A domain AQ16_1885 SM00382 ATPases associated with a variety of cellular activities AQ16_1891 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_1894 SM01091 Transporter associated domain AQ16_1904 SM00028 Tetratricopeptide repeats AQ16_1904 SM00530 Helix-turn-helix XRE-family like proteins AQ16_1907 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_1909 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AQ16_1909 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AQ16_191 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_1912 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AQ16_1912 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AQ16_1916 SM00448 cheY-homologous receiver domain AQ16_1916 SM00862 Transcriptional regulatory protein, C terminal AQ16_1917 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1917 SM00387 Histidine kinase-like ATPases AQ16_1917 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1919 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_1922 SM00919 Malic enzyme, NAD binding domain AQ16_1922 SM01274 AQ16_1922 AQ16_1924 SM00448 cheY-homologous receiver domain AQ16_1925 SM00387 Histidine kinase-like ATPases AQ16_1926 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_1926 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1929 SM00387 Histidine kinase-like ATPases AQ16_1929 SM00388 His Kinase A (phosphoacceptor) domain AQ16_1930 SM00448 cheY-homologous receiver domain AQ16_1930 SM00862 Transcriptional regulatory protein, C terminal AQ16_1932 SM00248 ankyrin repeats AQ16_1936 SM00448 cheY-homologous receiver domain AQ16_1937 SM00091 PAS domain AQ16_1937 SM00387 Histidine kinase-like ATPases AQ16_1938 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_1938 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_1939 SM00244 prohibitin homologues AQ16_1941 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AQ16_1944 SM00365 Leucine-rich repeat, SDS22-like subfamily AQ16_1944 SM00369 Leucine-rich repeats, typical (most populated) subfamily AQ16_1944 SM00725 NEAr Transporter domain AQ16_1945 SM00448 cheY-homologous receiver domain AQ16_1945 SM00850 LytTr DNA-binding domain AQ16_1948 SM00793 Accessory gene regulator B AQ16_1956 SM00382 ATPases associated with a variety of cellular activities AQ16_1966 SM00763 PrkA AAA domain AQ16_1968 SM00052 Putative diguanylate phosphodiesterase AQ16_1968 SM00091 PAS domain AQ16_1968 SM00267 diguanylate cyclase AQ16_197 SM00849 Metallo-beta-lactamase superfamily AQ16_1971 SM00567 E-Z type HEAT repeats AQ16_2003 SM00382 ATPases associated with a variety of cellular activities AQ16_2007 SM00382 ATPases associated with a variety of cellular activities AQ16_2012 SM00478 endonuclease III AQ16_2012 SM00525 AQ16_2012 AQ16_2028 SM00984 UDP binding domain AQ16_2039 SM00530 Helix-turn-helix XRE-family like proteins AQ16_2043 SM00382 ATPases associated with a variety of cellular activities AQ16_2047 SM00478 endonuclease III AQ16_2065 SM00226 Low molecular weight phosphatase family AQ16_2067 SM00831 Cation transporter/ATPase, N-terminus AQ16_207 SM00382 ATPases associated with a variety of cellular activities AQ16_2076 SM00946 Prolyl-tRNA synthetase, C-terminal AQ16_2081 SM00530 Helix-turn-helix XRE-family like proteins AQ16_2089 SM00060 Fibronectin type 3 domain AQ16_2089 SM00636 AQ16_2089 AQ16_2089 SM00637 AQ16_2089 AQ16_209 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AQ16_2090 SM00382 ATPases associated with a variety of cellular activities AQ16_2092 SM00382 ATPases associated with a variety of cellular activities AQ16_2096 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_2096 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_21 SM00382 ATPases associated with a variety of cellular activities AQ16_210 SM00363 S4 RNA-binding domain AQ16_2100 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AQ16_2100 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AQ16_2100 SM00493 AQ16_2100 AQ16_2104 SM00642 Alpha-amylase domain AQ16_2106 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_2106 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_2107 SM00382 ATPases associated with a variety of cellular activities AQ16_2108 SM00062 Bacterial periplasmic substrate-binding proteins AQ16_2108 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AQ16_2129 SM01007 Class II Aldolase and Adducin N-terminal domain AQ16_2138 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AQ16_2142 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AQ16_2142 SM00387 Histidine kinase-like ATPases AQ16_2142 SM00388 His Kinase A (phosphoacceptor) domain AQ16_2151 SM00382 ATPases associated with a variety of cellular activities AQ16_2155 SM00046 Diacylglycerol kinase catalytic domain (presumed) AQ16_2156 SM00845 GatB domain AQ16_2160 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_2166 SM00382 ATPases associated with a variety of cellular activities AQ16_2166 SM00930 AQ16_2166 AQ16_2172 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AQ16_2172 SM00292 breast cancer carboxy-terminal domain AQ16_2172 SM00532 Ligase N family AQ16_2176 SM00244 prohibitin homologues AQ16_2178 SM01209 AQ16_2178 AQ16_2178 SM01210 AQ16_2178 AQ16_2179 SM00798 AICARFT/IMPCHase bienzyme AQ16_2179 SM00851 MGS-like domain AQ16_218 SM00411 bacterial (prokaryotic) histone like domain AQ16_2184 SM01211 AQ16_2184 AQ16_2187 SM00998 Adenylosuccinate lyase C-terminus AQ16_2189 SM01001 AIR carboxylase AQ16_2195 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_2218 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_2218 SM00387 Histidine kinase-like ATPases AQ16_2218 SM00388 His Kinase A (phosphoacceptor) domain AQ16_2219 SM00448 cheY-homologous receiver domain AQ16_2219 SM00862 Transcriptional regulatory protein, C terminal AQ16_222 SM00923 MbtH-like protein AQ16_2223 SM00883 Chaperonin 10 Kd subunit AQ16_2226 SM00881 CoA binding domain AQ16_2227 SM00382 ATPases associated with a variety of cellular activities AQ16_223 SM00823 Phosphopantetheine attachment site AQ16_223 SM00824 Thioesterase AQ16_2249 SM00731 SprT homologues. AQ16_2250 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_2250 SM00732 Likely ribonuclease with RNase H fold. AQ16_2253 SM01005 Alanine racemase, C-terminal domain AQ16_2258 SM00487 DEAD-like helicases superfamily AQ16_2258 SM00490 helicase superfamily c-terminal domain AQ16_2272 SM00382 ATPases associated with a variety of cellular activities AQ16_2273 SM00382 ATPases associated with a variety of cellular activities AQ16_2281 SM00382 ATPases associated with a variety of cellular activities AQ16_2282 SM00421 helix_turn_helix, Lux Regulon AQ16_2282 SM00448 cheY-homologous receiver domain AQ16_2283 SM00387 Histidine kinase-like ATPases AQ16_2284 SM00382 ATPases associated with a variety of cellular activities AQ16_2295 SM00354 helix_turn _helix lactose operon repressor AQ16_2297 SM00563 Phosphate acyltransferases AQ16_23 SM00387 Histidine kinase-like ATPases AQ16_230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_2313 SM00382 ATPases associated with a variety of cellular activities AQ16_2314 SM00382 ATPases associated with a variety of cellular activities AQ16_2326 SM00829 Enoylreductase AQ16_2355 SM01251 AQ16_2355 AQ16_2358 SM00646 AQ16_2358 AQ16_2364 SM00382 ATPases associated with a variety of cellular activities AQ16_2365 SM00382 ATPases associated with a variety of cellular activities AQ16_2367 SM00662 RNA polymerases D AQ16_2371 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_2383 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AQ16_2384 SM01374 AQ16_2384 AQ16_2388 SM00322 K homology RNA-binding domain AQ16_2391 SM01382 AQ16_2391 AQ16_2391 SM01383 AQ16_2391 AQ16_2395 SM01403 AQ16_2395 AQ16_2397 SM00838 Elongation factor G C-terminus AQ16_2397 SM00889 Elongation factor G, domain IV AQ16_24 SM00448 cheY-homologous receiver domain AQ16_24 SM00862 Transcriptional regulatory protein, C terminal AQ16_2401 SM00663 RNA polymerase I subunit A N-terminus AQ16_2407 SM00649 Ribosomal protein L11/L12 AQ16_2408 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AQ16_2410 SM00421 helix_turn_helix, Lux Regulon AQ16_2412 SM00967 RNA 2'-O ribose methyltransferase substrate binding AQ16_2413 SM00535 Ribonuclease III family AQ16_2414 SM00840 AQ16_2414 AQ16_2419 SM00670 Large family of predicted nucleotide-binding domains AQ16_2421 SM00382 ATPases associated with a variety of cellular activities AQ16_2422 SM00382 ATPases associated with a variety of cellular activities AQ16_2422 SM01086 C-terminal, D2-small domain, of ClpB protein AQ16_2445 SM00530 Helix-turn-helix XRE-family like proteins AQ16_2447 SM00905 Dihydroneopterin aldolase AQ16_2455 SM00382 ATPases associated with a variety of cellular activities AQ16_2457 SM00977 TilS substrate C-terminal domain AQ16_2458 SM00331 Sigma factor PP2C-like phosphatases AQ16_2458 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AQ16_2461 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_2465 SM00363 S4 RNA-binding domain AQ16_2468 SM00966 SpoVT / AbrB like domain AQ16_2469 SM00487 DEAD-like helicases superfamily AQ16_2469 SM00490 helicase superfamily c-terminal domain AQ16_2469 SM00982 AQ16_2469 AQ16_2469 SM01058 CarD-like/TRCF domain AQ16_2472 SM01400 AQ16_2472 AQ16_2481 SM00650 Ribosomal RNA adenine dimethylases AQ16_2482 SM00493 AQ16_2482 AQ16_2485 SM00966 SpoVT / AbrB like domain AQ16_2503 SM00493 AQ16_2503 AQ16_2505 SM00382 ATPases associated with a variety of cellular activities AQ16_2515 SM00936 Penicillin-binding protein 5, C-terminal domain AQ16_2516 SM00116 Domain in cystathionine beta-synthase and other proteins. AQ16_2516 SM01240 AQ16_2516 AQ16_2525 SM00434 DNA Topoisomerase IV AQ16_2526 SM00387 Histidine kinase-like ATPases AQ16_2526 SM00433 TopoisomeraseII AQ16_2529 SM00480 DNA polymerase III beta subunit AQ16_2530 SM00382 ATPases associated with a variety of cellular activities AQ16_2530 SM00760 Bacterial dnaA protein helix-turn-helix domain AQ16_2534 SM00393 Putative single-stranded nucleic acids-binding domain AQ16_2534 SM01245 AQ16_2534 AQ16_2536 SM01228 AQ16_2536 AQ16_2538 SM00470 ParB-like nuclease domain AQ16_2540 SM00470 ParB-like nuclease domain AQ16_2549 SM00267 diguanylate cyclase AQ16_2552 SM00788 Adenylosuccinate synthetase AQ16_2557 SM00448 cheY-homologous receiver domain AQ16_2557 SM00862 Transcriptional regulatory protein, C terminal AQ16_2558 SM00091 PAS domain AQ16_2558 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_2558 SM00387 Histidine kinase-like ATPases AQ16_2558 SM00388 His Kinase A (phosphoacceptor) domain AQ16_2561 SM00849 Metallo-beta-lactamase superfamily AQ16_2562 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AQ16_2568 SM01240 AQ16_2568 AQ16_2570 SM00487 DEAD-like helicases superfamily AQ16_2570 SM00490 helicase superfamily c-terminal domain AQ16_2581 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AQ16_2581 SM00387 Histidine kinase-like ATPases AQ16_2582 SM00448 cheY-homologous receiver domain AQ16_2582 SM00850 LytTr DNA-binding domain AQ16_2593 SM00382 ATPases associated with a variety of cellular activities AQ16_2598 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_2604 SM00448 cheY-homologous receiver domain AQ16_2604 SM00850 LytTr DNA-binding domain AQ16_2607 SM00267 diguanylate cyclase AQ16_2609 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AQ16_2610 SM00421 helix_turn_helix, Lux Regulon AQ16_2610 SM00448 cheY-homologous receiver domain AQ16_2612 SM00100 Cyclic nucleotide-monophosphate binding domain AQ16_2619 SM00354 helix_turn _helix lactose operon repressor AQ16_2621 SM00382 ATPases associated with a variety of cellular activities AQ16_2623 SM00986 Uracil DNA glycosylase superfamily AQ16_2623 SM00987 UreE urease accessory protein, C-terminal domain AQ16_2632 SM00936 Penicillin-binding protein 5, C-terminal domain AQ16_2640 SM00382 ATPases associated with a variety of cellular activities AQ16_2642 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_2648 SM00422 helix_turn_helix, mercury resistance AQ16_2656 SM00836 DALR anticodon binding domain AQ16_2656 SM01016 Arginyl tRNA synthetase N terminal dom AQ16_2664 SM00382 ATPases associated with a variety of cellular activities AQ16_2667 SM00421 helix_turn_helix, Lux Regulon AQ16_2667 SM00448 cheY-homologous receiver domain AQ16_2669 SM00530 Helix-turn-helix XRE-family like proteins AQ16_2671 SM00052 Putative diguanylate phosphodiesterase AQ16_2671 SM00267 diguanylate cyclase AQ16_2673 SM00155 Phospholipase D. Active site motifs. AQ16_2683 SM00448 cheY-homologous receiver domain AQ16_2687 SM00357 Cold shock protein domain AQ16_2687 SM00382 ATPases associated with a variety of cellular activities AQ16_2687 SM00959 Rho termination factor, N-terminal domain AQ16_2690 SM00937 AQ16_2690 AQ16_2698 SM00903 Flavin reductase like domain AQ16_2701 SM00226 Low molecular weight phosphatase family AQ16_2714 SM00382 ATPases associated with a variety of cellular activities AQ16_2718 SM00052 Putative diguanylate phosphodiesterase AQ16_2718 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AQ16_2718 SM00091 PAS domain AQ16_2718 SM00267 diguanylate cyclase AQ16_2735 SM00850 LytTr DNA-binding domain AQ16_2736 SM00382 ATPases associated with a variety of cellular activities AQ16_274 SM00014 Acid phosphatase homologues AQ16_2747 SM00382 ATPases associated with a variety of cellular activities AQ16_2754 SM00448 cheY-homologous receiver domain AQ16_2754 SM00862 Transcriptional regulatory protein, C terminal AQ16_2755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_2755 SM00387 Histidine kinase-like ATPases AQ16_2755 SM00388 His Kinase A (phosphoacceptor) domain AQ16_2761 SM00382 ATPases associated with a variety of cellular activities AQ16_277 SM00219 Tyrosine kinase, catalytic domain AQ16_2771 SM00487 DEAD-like helicases superfamily AQ16_2771 SM00490 helicase superfamily c-terminal domain AQ16_2777 SM00287 Bacterial SH3 domain homologues AQ16_2783 SM00287 Bacterial SH3 domain homologues AQ16_2812 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AQ16_2813 SM00382 ATPases associated with a variety of cellular activities AQ16_2816 SM00984 UDP binding domain AQ16_2824 SM00487 DEAD-like helicases superfamily AQ16_2824 SM00490 helicase superfamily c-terminal domain AQ16_2826 SM00357 Cold shock protein domain AQ16_2828 SM00957 SecA DEAD-like domain AQ16_2828 SM00958 SecA preprotein cross-linking domain AQ16_2829 SM00937 AQ16_2829 AQ16_2831 SM00382 ATPases associated with a variety of cellular activities AQ16_2833 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AQ16_2833 SM00245 tail specific protease AQ16_2835 SM00382 ATPases associated with a variety of cellular activities AQ16_2838 SM00422 helix_turn_helix, mercury resistance AQ16_2841 SM00530 Helix-turn-helix XRE-family like proteins AQ16_2846 SM00422 helix_turn_helix, mercury resistance AQ16_2849 SM00487 DEAD-like helicases superfamily AQ16_2849 SM00490 helicase superfamily c-terminal domain AQ16_285 SM00382 ATPases associated with a variety of cellular activities AQ16_2857 SM00028 Tetratricopeptide repeats AQ16_2877 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AQ16_288 SM00882 Coenzyme A transferase AQ16_2881 SM01192 AQ16_2881 AQ16_2881 SM01193 AQ16_2881 AQ16_2887 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_2887 SM00357 Cold shock protein domain AQ16_2887 SM00955 AQ16_2887 AQ16_289 SM00882 Coenzyme A transferase AQ16_2890 SM00448 cheY-homologous receiver domain AQ16_2890 SM00862 Transcriptional regulatory protein, C terminal AQ16_2894 SM00382 ATPases associated with a variety of cellular activities AQ16_2900 SM00382 ATPases associated with a variety of cellular activities AQ16_2907 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_2908 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AQ16_2910 SM00363 S4 RNA-binding domain AQ16_2918 SM01276 AQ16_2918 AQ16_292 SM00387 Histidine kinase-like ATPases AQ16_292 SM00388 His Kinase A (phosphoacceptor) domain AQ16_2936 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_2940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_2940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_2941 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_2941 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_2945 SM00387 Histidine kinase-like ATPases AQ16_2945 SM00388 His Kinase A (phosphoacceptor) domain AQ16_2946 SM00448 cheY-homologous receiver domain AQ16_2946 SM00862 Transcriptional regulatory protein, C terminal AQ16_295 SM01091 Transporter associated domain AQ16_2951 SM00530 Helix-turn-helix XRE-family like proteins AQ16_2967 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_2967 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_2976 SM00849 Metallo-beta-lactamase superfamily AQ16_2988 SM00493 AQ16_2988 AQ16_2991 SM00382 ATPases associated with a variety of cellular activities AQ16_2991 SM00930 AQ16_2991 AQ16_2995 SM00382 ATPases associated with a variety of cellular activities AQ16_3007 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_3009 SM00855 Phosphoglycerate mutase family AQ16_3012 SM00422 helix_turn_helix, mercury resistance AQ16_303 SM00382 ATPases associated with a variety of cellular activities AQ16_3038 SM00382 ATPases associated with a variety of cellular activities AQ16_3049 SM00871 Bacterial transcription activator, effector binding domain AQ16_3067 SM00479 AQ16_3067 AQ16_3068 SM01298 AQ16_3068 AQ16_3075 SM00344 helix_turn_helix ASNC type AQ16_3077 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_310 SM01350 AQ16_310 AQ16_3114 SM00642 Alpha-amylase domain AQ16_3121 SM00422 helix_turn_helix, mercury resistance AQ16_3123 SM00357 Cold shock protein domain AQ16_3131 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AQ16_3132 SM00448 cheY-homologous receiver domain AQ16_3132 SM00862 Transcriptional regulatory protein, C terminal AQ16_3133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_3133 SM00387 Histidine kinase-like ATPases AQ16_3133 SM00388 His Kinase A (phosphoacceptor) domain AQ16_3141 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_3141 SM00866 AQ16_3141 AQ16_3147 SM00382 ATPases associated with a variety of cellular activities AQ16_3150 SM00387 Histidine kinase-like ATPases AQ16_3151 SM00448 cheY-homologous receiver domain AQ16_3151 SM00862 Transcriptional regulatory protein, C terminal AQ16_3152 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_3154 SM00342 helix_turn_helix, arabinose operon control protein AQ16_3154 SM00871 Bacterial transcription activator, effector binding domain AQ16_3155 SM00382 ATPases associated with a variety of cellular activities AQ16_3158 SM00342 helix_turn_helix, arabinose operon control protein AQ16_3165 SM00046 Diacylglycerol kinase catalytic domain (presumed) AQ16_3171 SM00448 cheY-homologous receiver domain AQ16_3171 SM00862 Transcriptional regulatory protein, C terminal AQ16_3172 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_3172 SM00387 Histidine kinase-like ATPases AQ16_3172 SM00388 His Kinase A (phosphoacceptor) domain AQ16_3174 SM00899 AQ16_3174 AQ16_318 SM00829 Enoylreductase AQ16_3186 SM00894 Excalibur calcium-binding domain AQ16_3190 SM01234 AQ16_3190 AQ16_3191 SM00947 Carbonic anhydrase AQ16_320 SM00421 helix_turn_helix, Lux Regulon AQ16_320 SM00448 cheY-homologous receiver domain AQ16_3207 SM00382 ATPases associated with a variety of cellular activities AQ16_321 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AQ16_3213 SM00387 Histidine kinase-like ATPases AQ16_3213 SM00388 His Kinase A (phosphoacceptor) domain AQ16_3214 SM00387 Histidine kinase-like ATPases AQ16_3229 SM00852 Probable molybdopterin binding domain AQ16_3232 SM00014 Acid phosphatase homologues AQ16_3242 SM00382 ATPases associated with a variety of cellular activities AQ16_3244 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_3248 SM00382 ATPases associated with a variety of cellular activities AQ16_3263 SM00450 Rhodanese Homology Domain AQ16_3267 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_3270 SM00852 Probable molybdopterin binding domain AQ16_3277 SM01058 CarD-like/TRCF domain AQ16_328 SM00014 Acid phosphatase homologues AQ16_3282 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_3286 SM00363 S4 RNA-binding domain AQ16_3287 SM00420 helix_turn_helix, Deoxyribose operon repressor AQ16_3290 SM00642 Alpha-amylase domain AQ16_3294 SM00849 Metallo-beta-lactamase superfamily AQ16_3302 SM00646 AQ16_3302 AQ16_3303 SM00382 ATPases associated with a variety of cellular activities AQ16_3303 SM00843 AQ16_3303 AQ16_3308 SM00422 helix_turn_helix, mercury resistance AQ16_3318 SM00354 helix_turn _helix lactose operon repressor AQ16_3324 SM00448 cheY-homologous receiver domain AQ16_3324 SM00862 Transcriptional regulatory protein, C terminal AQ16_3324 SM01043 Bacterial transcriptional activator domain AQ16_3325 SM00327 von Willebrand factor (vWF) type A domain AQ16_3328 SM00387 Histidine kinase-like ATPases AQ16_3328 SM00388 His Kinase A (phosphoacceptor) domain AQ16_3328 SM00448 cheY-homologous receiver domain AQ16_3332 SM00116 Domain in cystathionine beta-synthase and other proteins. AQ16_3335 SM01266 AQ16_3335 AQ16_3339 SM00363 S4 RNA-binding domain AQ16_3343 SM00363 S4 RNA-binding domain AQ16_3343 SM01390 AQ16_3343 AQ16_3351 SM00981 AQ16_3351 AQ16_3375 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AQ16_3375 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AQ16_3377 SM00530 Helix-turn-helix XRE-family like proteins AQ16_3389 SM00849 Metallo-beta-lactamase superfamily AQ16_3391 SM00116 Domain in cystathionine beta-synthase and other proteins. AQ16_3399 SM00481 DNA polymerase alpha chain like domain AQ16_340 SM00563 Phosphate acyltransferases AQ16_3400 SM00919 Malic enzyme, NAD binding domain AQ16_3400 SM01274 AQ16_3400 AQ16_3401 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_3410 SM01329 AQ16_3410 AQ16_3415 SM00448 cheY-homologous receiver domain AQ16_3415 SM00862 Transcriptional regulatory protein, C terminal AQ16_3416 SM00091 PAS domain AQ16_3416 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_3416 SM00387 Histidine kinase-like ATPases AQ16_3416 SM00388 His Kinase A (phosphoacceptor) domain AQ16_3417 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AQ16_3417 SM00474 3'-5' exonuclease AQ16_3417 SM00475 5'-3' exonuclease AQ16_3417 SM00482 DNA polymerase A domain AQ16_3418 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AQ16_3418 SM01232 AQ16_3418 AQ16_3421 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AQ16_3426 SM00382 ATPases associated with a variety of cellular activities AQ16_3428 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AQ16_3440 SM00967 RNA 2'-O ribose methyltransferase substrate binding AQ16_3442 SM00873 B3/4 domain AQ16_3442 SM00874 tRNA synthetase B5 domain AQ16_3442 SM00896 Ferredoxin-fold anticodon binding domain AQ16_3449 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AQ16_3449 SM00481 DNA polymerase alpha chain like domain AQ16_3449 SM00483 DNA polymerase X family AQ16_3450 SM00463 Small MutS-related domain AQ16_3450 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AQ16_3450 SM00534 ATPase domain of DNA mismatch repair MUTS family AQ16_3452 SM00363 S4 RNA-binding domain AQ16_3454 SM00725 NEAr Transporter domain AQ16_3455 SM00725 NEAr Transporter domain AQ16_3456 SM00725 NEAr Transporter domain AQ16_3459 SM00382 ATPases associated with a variety of cellular activities AQ16_3462 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AQ16_3465 SM00448 cheY-homologous receiver domain AQ16_3465 SM00862 Transcriptional regulatory protein, C terminal AQ16_3466 SM00387 Histidine kinase-like ATPases AQ16_3466 SM00388 His Kinase A (phosphoacceptor) domain AQ16_3467 SM00382 ATPases associated with a variety of cellular activities AQ16_3478 SM00893 Electron transfer flavoprotein domain AQ16_3479 SM00893 Electron transfer flavoprotein domain AQ16_3481 SM00465 GIY-YIG type nucleases (URI domain) AQ16_3492 SM00382 ATPases associated with a variety of cellular activities AQ16_3497 SM00530 Helix-turn-helix XRE-family like proteins AQ16_3501 SM00421 helix_turn_helix, Lux Regulon AQ16_351 SM00382 ATPases associated with a variety of cellular activities AQ16_3516 SM00530 Helix-turn-helix XRE-family like proteins AQ16_3519 SM00530 Helix-turn-helix XRE-family like proteins AQ16_3521 SM00857 Resolvase, N terminal domain AQ16_3522 SM00857 Resolvase, N terminal domain AQ16_3526 SM00479 AQ16_3526 AQ16_3530 SM00857 Resolvase, N terminal domain AQ16_3539 SM00909 Sporulation and spore germination AQ16_3551 SM00382 ATPases associated with a variety of cellular activities AQ16_3551 SM00994 ClpX C4-type zinc finger AQ16_3551 SM01086 C-terminal, D2-small domain, of ClpB protein AQ16_3552 SM00382 ATPases associated with a variety of cellular activities AQ16_3553 SM00382 ATPases associated with a variety of cellular activities AQ16_3553 SM00464 Found in ATP-dependent protease La (LON) AQ16_3556 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_3561 SM01004 Delta-aminolevulinic acid dehydratase AQ16_3563 SM00257 Lysin motif AQ16_3581 SM01317 AQ16_3581 AQ16_3583 SM00448 cheY-homologous receiver domain AQ16_3583 SM00862 Transcriptional regulatory protein, C terminal AQ16_3584 SM00387 Histidine kinase-like ATPases AQ16_3585 SM00382 ATPases associated with a variety of cellular activities AQ16_3595 SM00257 Lysin motif AQ16_3598 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_3602 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AQ16_3603 SM00382 ATPases associated with a variety of cellular activities AQ16_3607 SM01323 AQ16_3607 AQ16_3616 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_3616 SM00954 Region found in RelA / SpoT proteins AQ16_3623 SM00382 ATPases associated with a variety of cellular activities AQ16_3624 SM00382 ATPases associated with a variety of cellular activities AQ16_3628 SM00028 Tetratricopeptide repeats AQ16_3635 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AQ16_3637 SM00732 Likely ribonuclease with RNase H fold. AQ16_3656 SM00382 ATPases associated with a variety of cellular activities AQ16_3661 SM00530 Helix-turn-helix XRE-family like proteins AQ16_3671 SM00855 Phosphoglycerate mutase family AQ16_3675 SM00857 Resolvase, N terminal domain AQ16_3682 SM00098 Alkaline phosphatase homologues AQ16_3684 SM00954 Region found in RelA / SpoT proteins AQ16_3695 SM01103 AQ16_3695 AQ16_3697 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_3701 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AQ16_3703 SM00849 Metallo-beta-lactamase superfamily AQ16_3709 SM00838 Elongation factor G C-terminus AQ16_3711 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_3715 SM00271 DnaJ molecular chaperone homology domain AQ16_3718 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_372 SM00028 Tetratricopeptide repeats AQ16_3724 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_3731 SM00116 Domain in cystathionine beta-synthase and other proteins. AQ16_3733 SM00400 zinc finger AQ16_3733 SM00493 AQ16_3733 AQ16_3733 SM00766 DNA primase DnaG DnaB-binding AQ16_374 SM00836 DALR anticodon binding domain AQ16_374 SM01016 Arginyl tRNA synthetase N terminal dom AQ16_3740 SM00487 DEAD-like helicases superfamily AQ16_3740 SM00490 helicase superfamily c-terminal domain AQ16_3741 SM00518 AP endonuclease family 2 AQ16_3744 SM00382 ATPases associated with a variety of cellular activities AQ16_3757 SM00382 ATPases associated with a variety of cellular activities AQ16_3765 SM00849 Metallo-beta-lactamase superfamily AQ16_3767 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_3772 SM01018 B12 binding domain AQ16_378 SM00567 E-Z type HEAT repeats AQ16_378 SM00932 Scaffold protein Nfu/NifU N terminal AQ16_3783 SM00382 ATPases associated with a variety of cellular activities AQ16_3792 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AQ16_3800 SM00487 DEAD-like helicases superfamily AQ16_3800 SM00490 helicase superfamily c-terminal domain AQ16_3806 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_3807 SM00382 ATPases associated with a variety of cellular activities AQ16_3817 SM00354 helix_turn _helix lactose operon repressor AQ16_3819 SM00450 Rhodanese Homology Domain AQ16_382 SM00382 ATPases associated with a variety of cellular activities AQ16_3827 SM00529 Helix-turn-helix diphteria tox regulatory element AQ16_383 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_3834 SM00841 Elongation factor P, C-terminal AQ16_3834 SM01185 AQ16_3834 AQ16_3838 SM00382 ATPases associated with a variety of cellular activities AQ16_3848 SM00878 Biotin carboxylase C-terminal domain AQ16_3855 SM00861 Transketolase, pyrimidine binding domain AQ16_3856 SM00363 S4 RNA-binding domain AQ16_3859 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AQ16_3860 SM00448 cheY-homologous receiver domain AQ16_3877 SM00091 PAS domain AQ16_3877 SM00382 ATPases associated with a variety of cellular activities AQ16_3879 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AQ16_3883 SM00861 Transketolase, pyrimidine binding domain AQ16_3890 SM00062 Bacterial periplasmic substrate-binding proteins AQ16_3890 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AQ16_3892 SM00382 ATPases associated with a variety of cellular activities AQ16_39 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_3901 SM00831 Cation transporter/ATPase, N-terminus AQ16_3903 SM00849 Metallo-beta-lactamase superfamily AQ16_3907 SM00849 Metallo-beta-lactamase superfamily AQ16_3910 SM00859 Semialdehyde dehydrogenase, NAD binding domain AQ16_3917 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_3927 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_3927 SM00876 Biotin and Thiamin Synthesis associated domain AQ16_3933 SM00704 CDGSH-type zinc finger. Function unknown. AQ16_3937 SM00354 helix_turn _helix lactose operon repressor AQ16_3956 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AQ16_3960 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_3964 SM00382 ATPases associated with a variety of cellular activities AQ16_3965 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_3966 SM00936 Penicillin-binding protein 5, C-terminal domain AQ16_3968 SM00387 Histidine kinase-like ATPases AQ16_3987 SM00849 Metallo-beta-lactamase superfamily AQ16_3990 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_3990 SM00866 AQ16_3990 AQ16_3992 SM01061 CAT RNA binding domain AQ16_3999 SM00267 diguanylate cyclase AQ16_4005 SM01007 Class II Aldolase and Adducin N-terminal domain AQ16_4022 SM00382 ATPases associated with a variety of cellular activities AQ16_4029 SM00382 ATPases associated with a variety of cellular activities AQ16_403 SM00852 Probable molybdopterin binding domain AQ16_4030 SM00642 Alpha-amylase domain AQ16_4031 SM00642 Alpha-amylase domain AQ16_4035 SM00354 helix_turn _helix lactose operon repressor AQ16_4038 SM00387 Histidine kinase-like ATPases AQ16_4038 SM00388 His Kinase A (phosphoacceptor) domain AQ16_405 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_4051 SM00267 diguanylate cyclase AQ16_406 SM00100 Cyclic nucleotide-monophosphate binding domain AQ16_406 SM00419 helix_turn_helix, cAMP Regulatory protein AQ16_4060 SM00052 Putative diguanylate phosphodiesterase AQ16_4073 SM00849 Metallo-beta-lactamase superfamily AQ16_4079 SM00861 Transketolase, pyrimidine binding domain AQ16_408 SM00382 ATPases associated with a variety of cellular activities AQ16_409 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_4095 SM00838 Elongation factor G C-terminus AQ16_4100 SM00670 Large family of predicted nucleotide-binding domains AQ16_4104 SM00878 Biotin carboxylase C-terminal domain AQ16_4116 SM00855 Phosphoglycerate mutase family AQ16_4124 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AQ16_4128 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains AQ16_4134 SM00740 AQ16_4134 AQ16_4135 SM00740 AQ16_4135 AQ16_414 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AQ16_4143 SM00842 Cell division protein FtsA AQ16_4144 SM00864 Tubulin/FtsZ family, GTPase domain AQ16_4144 SM00865 Tubulin/FtsZ family, C-terminal domain AQ16_4153 SM00363 S4 RNA-binding domain AQ16_4158 SM00363 S4 RNA-binding domain AQ16_4163 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AQ16_4164 SM00851 MGS-like domain AQ16_4164 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AQ16_4164 SM01209 AQ16_4164 AQ16_4167 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AQ16_417 SM00460 Transglutaminase/protease-like homologues AQ16_4176 SM00831 Cation transporter/ATPase, N-terminus AQ16_4179 SM00072 Guanylate kinase homologues. AQ16_4180 SM01409 AQ16_4180 AQ16_4182 SM00487 DEAD-like helicases superfamily AQ16_4182 SM00490 helicase superfamily c-terminal domain AQ16_4187 SM00331 Sigma factor PP2C-like phosphatases AQ16_4187 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AQ16_4188 SM00220 Serine/Threonine protein kinases, catalytic domain AQ16_4188 SM00740 AQ16_4188 AQ16_4191 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AQ16_4194 SM01120 AQ16_4194 AQ16_4194 SM01121 AQ16_4194 AQ16_4195 SM00487 DEAD-like helicases superfamily AQ16_4195 SM00490 helicase superfamily c-terminal domain AQ16_4198 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AQ16_4199 SM00822 AQ16_4199 AQ16_42 SM00342 helix_turn_helix, arabinose operon control protein AQ16_420 SM00849 Metallo-beta-lactamase superfamily AQ16_4201 SM00358 Double-stranded RNA binding motif AQ16_4201 SM00535 Ribonuclease III family AQ16_4202 SM00968 SMC proteins Flexible Hinge Domain AQ16_4203 SM00382 ATPases associated with a variety of cellular activities AQ16_4203 SM00962 SRP54-type protein, GTPase domain AQ16_4203 SM00963 SRP54-type protein, helical bundle domain AQ16_4205 SM00382 ATPases associated with a variety of cellular activities AQ16_4205 SM00962 SRP54-type protein, GTPase domain AQ16_4205 SM00963 SRP54-type protein, helical bundle domain AQ16_4215 SM00881 CoA binding domain AQ16_4217 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AQ16_4217 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AQ16_4217 SM00493 AQ16_4217 AQ16_4221 SM00382 ATPases associated with a variety of cellular activities AQ16_4221 SM01086 C-terminal, D2-small domain, of ClpB protein AQ16_4230 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AQ16_4232 SM00479 AQ16_4232 AQ16_4232 SM00481 DNA polymerase alpha chain like domain AQ16_4234 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_4234 SM00322 K homology RNA-binding domain AQ16_4241 SM00904 Riboflavin kinase AQ16_4242 SM01387 AQ16_4242 AQ16_4243 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_4243 SM00322 K homology RNA-binding domain AQ16_4249 SM00857 Resolvase, N terminal domain AQ16_4257 SM00859 Semialdehyde dehydrogenase, NAD binding domain AQ16_4259 SM01130 AQ16_4259 AQ16_426 SM00829 Enoylreductase AQ16_4260 SM00849 Metallo-beta-lactamase superfamily AQ16_4263 SM00382 ATPases associated with a variety of cellular activities AQ16_4263 SM00843 AQ16_4263 AQ16_4264 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_4264 SM00866 AQ16_4264 AQ16_4266 SM00382 ATPases associated with a variety of cellular activities AQ16_4276 SM00852 Probable molybdopterin binding domain AQ16_4277 SM00382 ATPases associated with a variety of cellular activities AQ16_4278 SM00322 K homology RNA-binding domain AQ16_4278 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AQ16_4284 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_4287 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AQ16_4287 SM00534 ATPase domain of DNA mismatch repair MUTS family AQ16_4288 SM00853 MutL C terminal dimerisation domain AQ16_4288 SM01340 AQ16_4288 AQ16_429 SM00487 DEAD-like helicases superfamily AQ16_429 SM00490 helicase superfamily c-terminal domain AQ16_4290 SM00382 ATPases associated with a variety of cellular activities AQ16_4293 SM00448 cheY-homologous receiver domain AQ16_4293 SM00862 Transcriptional regulatory protein, C terminal AQ16_4294 SM00387 Histidine kinase-like ATPases AQ16_4294 SM00388 His Kinase A (phosphoacceptor) domain AQ16_4300 SM00257 Lysin motif AQ16_4305 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_4305 SM00866 AQ16_4305 AQ16_4309 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_4319 SM00052 Putative diguanylate phosphodiesterase AQ16_4319 SM00091 PAS domain AQ16_4319 SM00267 diguanylate cyclase AQ16_4325 SM00478 endonuclease III AQ16_4327 SM00342 helix_turn_helix, arabinose operon control protein AQ16_4332 SM00382 ATPases associated with a variety of cellular activities AQ16_4339 SM00411 bacterial (prokaryotic) histone like domain AQ16_4342 SM00636 AQ16_4342 AQ16_4348 SM00420 helix_turn_helix, Deoxyribose operon repressor AQ16_4348 SM01134 AQ16_4348 AQ16_4351 SM00287 Bacterial SH3 domain homologues AQ16_4361 SM00382 ATPases associated with a variety of cellular activities AQ16_4366 SM00422 helix_turn_helix, mercury resistance AQ16_4367 SM01230 AQ16_4367 AQ16_4377 SM00857 Resolvase, N terminal domain AQ16_4380 SM00062 Bacterial periplasmic substrate-binding proteins AQ16_4381 SM00382 ATPases associated with a variety of cellular activities AQ16_4384 SM00861 Transketolase, pyrimidine binding domain AQ16_4387 SM00382 ATPases associated with a variety of cellular activities AQ16_4388 SM00382 ATPases associated with a variety of cellular activities AQ16_4391 SM00644 AQ16_4391 AQ16_4400 SM00382 ATPases associated with a variety of cellular activities AQ16_4418 SM01058 CarD-like/TRCF domain AQ16_4425 SM00091 PAS domain AQ16_4425 SM00387 Histidine kinase-like ATPases AQ16_4425 SM00388 His Kinase A (phosphoacceptor) domain AQ16_4428 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AQ16_4429 SM00644 AQ16_4429 AQ16_4429 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AQ16_4435 SM00530 Helix-turn-helix XRE-family like proteins AQ16_4436 SM00382 ATPases associated with a variety of cellular activities AQ16_4444 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AQ16_4453 SM00382 ATPases associated with a variety of cellular activities AQ16_4456 SM00479 AQ16_4456 AQ16_4460 SM00257 Lysin motif AQ16_4460 SM00636 AQ16_4460 AQ16_4463 SM01207 AQ16_4463 AQ16_4466 SM00448 cheY-homologous receiver domain AQ16_4466 SM00862 Transcriptional regulatory protein, C terminal AQ16_4467 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AQ16_4468 SM00881 CoA binding domain AQ16_4469 SM00387 Histidine kinase-like ATPases AQ16_4469 SM00433 TopoisomeraseII AQ16_4470 SM00434 DNA Topoisomerase IV AQ16_4473 SM00420 helix_turn_helix, Deoxyribose operon repressor AQ16_4475 SM00382 ATPases associated with a variety of cellular activities AQ16_4497 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AQ16_4497 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AQ16_450 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_4501 SM00729 Elongator protein 3, MiaB family, Radical SAM AQ16_4504 SM00852 Probable molybdopterin binding domain AQ16_4525 SM01022 AQ16_4525 AQ16_4530 SM00357 Cold shock protein domain AQ16_4531 SM00479 AQ16_4531 AQ16_4537 SM00382 ATPases associated with a variety of cellular activities AQ16_4538 SM00062 Bacterial periplasmic substrate-binding proteins AQ16_4538 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AQ16_4546 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AQ16_4548 SM00387 Histidine kinase-like ATPases AQ16_4548 SM00388 His Kinase A (phosphoacceptor) domain AQ16_4551 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_4552 SM00646 AQ16_4552 AQ16_4558 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_4569 SM00829 Enoylreductase AQ16_457 SM01005 Alanine racemase, C-terminal domain AQ16_4570 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_4582 SM00422 helix_turn_helix, mercury resistance AQ16_4582 SM00871 Bacterial transcription activator, effector binding domain AQ16_4587 SM00642 Alpha-amylase domain AQ16_4589 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AQ16_4589 SM00534 ATPase domain of DNA mismatch repair MUTS family AQ16_4591 SM00855 Phosphoglycerate mutase family AQ16_4592 SM00829 Enoylreductase AQ16_460 SM00855 Phosphoglycerate mutase family AQ16_4613 SM00829 Enoylreductase AQ16_4617 SM00849 Metallo-beta-lactamase superfamily AQ16_4631 SM00849 Metallo-beta-lactamase superfamily AQ16_4636 SM00382 ATPases associated with a variety of cellular activities AQ16_4639 SM00420 helix_turn_helix, Deoxyribose operon repressor AQ16_464 SM00244 prohibitin homologues AQ16_4640 SM00871 Bacterial transcription activator, effector binding domain AQ16_4646 SM00636 AQ16_4646 AQ16_4647 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_4662 SM00849 Metallo-beta-lactamase superfamily AQ16_4666 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_4666 SM00866 AQ16_4666 AQ16_4670 SM00914 AQ16_4670 AQ16_4676 SM00829 Enoylreductase AQ16_4679 SM00861 Transketolase, pyrimidine binding domain AQ16_4680 SM01350 AQ16_4680 AQ16_4694 SM00422 helix_turn_helix, mercury resistance AQ16_4695 SM01091 Transporter associated domain AQ16_4713 SM00382 ATPases associated with a variety of cellular activities AQ16_4715 SM01266 AQ16_4715 AQ16_4726 SM00530 Helix-turn-helix XRE-family like proteins AQ16_4729 SM00382 ATPases associated with a variety of cellular activities AQ16_4745 SM00530 Helix-turn-helix XRE-family like proteins AQ16_4748 SM00422 helix_turn_helix, mercury resistance AQ16_4760 SM00382 ATPases associated with a variety of cellular activities AQ16_4773 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_4775 SM00382 ATPases associated with a variety of cellular activities AQ16_478 SM01091 Transporter associated domain AQ16_4780 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_4786 SM00854 Bacterial capsule synthesis protein PGA_cap AQ16_4794 SM00287 Bacterial SH3 domain homologues AQ16_4794 SM00644 AQ16_4794 AQ16_4797 SM00421 helix_turn_helix, Lux Regulon AQ16_4797 SM00448 cheY-homologous receiver domain AQ16_4812 SM00448 cheY-homologous receiver domain AQ16_4812 SM00862 Transcriptional regulatory protein, C terminal AQ16_4813 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_4813 SM00387 Histidine kinase-like ATPases AQ16_4813 SM00388 His Kinase A (phosphoacceptor) domain AQ16_4815 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_4817 SM00382 ATPases associated with a variety of cellular activities AQ16_4824 SM00530 Helix-turn-helix XRE-family like proteins AQ16_483 SM00155 Phospholipase D. Active site motifs. AQ16_4835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_4835 SM00387 Histidine kinase-like ATPases AQ16_4835 SM00388 His Kinase A (phosphoacceptor) domain AQ16_4836 SM00448 cheY-homologous receiver domain AQ16_4836 SM00862 Transcriptional regulatory protein, C terminal AQ16_4854 SM00344 helix_turn_helix ASNC type AQ16_4866 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_4869 SM00226 Low molecular weight phosphatase family AQ16_4875 SM00421 helix_turn_helix, Lux Regulon AQ16_4875 SM00448 cheY-homologous receiver domain AQ16_4876 SM00387 Histidine kinase-like ATPases AQ16_4878 SM00382 ATPases associated with a variety of cellular activities AQ16_4921 SM00387 Histidine kinase-like ATPases AQ16_4922 SM00448 cheY-homologous receiver domain AQ16_4929 SM00342 helix_turn_helix, arabinose operon control protein AQ16_493 SM00855 Phosphoglycerate mutase family AQ16_4934 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AQ16_4934 SM00091 PAS domain AQ16_4934 SM00387 Histidine kinase-like ATPases AQ16_4934 SM00388 His Kinase A (phosphoacceptor) domain AQ16_4938 SM00530 Helix-turn-helix XRE-family like proteins AQ16_4939 SM00870 AQ16_4939 AQ16_4946 SM00849 Metallo-beta-lactamase superfamily AQ16_4961 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_4965 SM00346 helix_turn_helix isocitrate lyase regulation AQ16_4966 SM00796 Allophanate hydrolase subunit 1 AQ16_4967 SM00797 Allophanate hydrolase subunit 2 AQ16_4981 SM00422 helix_turn_helix, mercury resistance AQ16_4994 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_4999 SM00342 helix_turn_helix, arabinose operon control protein AQ16_4999 SM00871 Bacterial transcription activator, effector binding domain AQ16_5004 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_5005 SM00382 ATPases associated with a variety of cellular activities AQ16_5010 SM00889 Elongation factor G, domain IV AQ16_5011 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_5014 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_5026 SM01060 AQ16_5026 AQ16_5039 SM00850 LytTr DNA-binding domain AQ16_504 SM00833 Cobalamin synthesis protein cobW C-terminal domain AQ16_5044 SM00530 Helix-turn-helix XRE-family like proteins AQ16_5046 SM00098 Alkaline phosphatase homologues AQ16_5051 SM00346 helix_turn_helix isocitrate lyase regulation AQ16_5054 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AQ16_5058 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_5065 SM01133 AQ16_5065 AQ16_5069 SM00382 ATPases associated with a variety of cellular activities AQ16_5075 SM00287 Bacterial SH3 domain homologues AQ16_5083 SM00830 Chorismate mutase type II AQ16_5097 SM00530 Helix-turn-helix XRE-family like proteins AQ16_5099 SM00382 ATPases associated with a variety of cellular activities AQ16_5120 SM00028 Tetratricopeptide repeats AQ16_5124 SM00382 ATPases associated with a variety of cellular activities AQ16_5125 SM00062 Bacterial periplasmic substrate-binding proteins AQ16_5139 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_5140 SM00382 ATPases associated with a variety of cellular activities AQ16_516 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AQ16_516 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_5178 SM00344 helix_turn_helix ASNC type AQ16_5190 SM00448 cheY-homologous receiver domain AQ16_5190 SM00862 Transcriptional regulatory protein, C terminal AQ16_5191 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_5191 SM00387 Histidine kinase-like ATPases AQ16_5191 SM00388 His Kinase A (phosphoacceptor) domain AQ16_5192 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AQ16_5198 SM00248 ankyrin repeats AQ16_5202 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AQ16_5206 SM00530 Helix-turn-helix XRE-family like proteins AQ16_5218 SM00091 PAS domain AQ16_5218 SM00382 ATPases associated with a variety of cellular activities AQ16_5222 SM01130 AQ16_5222 AQ16_5229 SM01131 AQ16_5229 AQ16_523 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_5238 SM00341 Helicase and RNase D C-terminal AQ16_5238 SM00487 DEAD-like helicases superfamily AQ16_5238 SM00490 helicase superfamily c-terminal domain AQ16_5238 SM00956 AQ16_5238 AQ16_5244 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_5251 SM00849 Metallo-beta-lactamase superfamily AQ16_5259 SM00060 Fibronectin type 3 domain AQ16_5259 SM00495 Chitin-binding domain type 3 AQ16_526 SM00966 SpoVT / AbrB like domain AQ16_5266 SM00116 Domain in cystathionine beta-synthase and other proteins. AQ16_5266 SM00382 ATPases associated with a variety of cellular activities AQ16_5278 SM00861 Transketolase, pyrimidine binding domain AQ16_5283 SM00420 helix_turn_helix, Deoxyribose operon repressor AQ16_5283 SM01134 AQ16_5283 AQ16_531 SM00460 Transglutaminase/protease-like homologues AQ16_5310 SM00829 Enoylreductase AQ16_5311 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_5316 SM00871 Bacterial transcription activator, effector binding domain AQ16_5318 SM00642 Alpha-amylase domain AQ16_5319 SM00014 Acid phosphatase homologues AQ16_5333 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_5347 SM00480 DNA polymerase III beta subunit AQ16_536 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_5364 SM00465 GIY-YIG type nucleases (URI domain) AQ16_5390 SM00740 AQ16_5390 AQ16_5391 SM00014 Acid phosphatase homologues AQ16_5392 SM00829 Enoylreductase AQ16_5393 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_5393 SM00387 Histidine kinase-like ATPases AQ16_5393 SM00388 His Kinase A (phosphoacceptor) domain AQ16_5394 SM00448 cheY-homologous receiver domain AQ16_5394 SM00862 Transcriptional regulatory protein, C terminal AQ16_5398 SM00387 Histidine kinase-like ATPases AQ16_5398 SM00388 His Kinase A (phosphoacceptor) domain AQ16_5401 SM00382 ATPases associated with a variety of cellular activities AQ16_5405 SM00091 PAS domain AQ16_5405 SM00387 Histidine kinase-like ATPases AQ16_5405 SM00388 His Kinase A (phosphoacceptor) domain AQ16_5459 SM00849 Metallo-beta-lactamase superfamily AQ16_5482 SM01350 AQ16_5482 AQ16_5485 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_5485 SM00895 AQ16_5485 AQ16_550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_550 SM00387 Histidine kinase-like ATPases AQ16_550 SM00388 His Kinase A (phosphoacceptor) domain AQ16_5503 SM00287 Bacterial SH3 domain homologues AQ16_551 SM00448 cheY-homologous receiver domain AQ16_551 SM00862 Transcriptional regulatory protein, C terminal AQ16_5515 SM00530 Helix-turn-helix XRE-family like proteins AQ16_5538 SM00857 Resolvase, N terminal domain AQ16_5553 SM00047 Lysozyme subfamily 2 AQ16_5559 SM00382 ATPases associated with a variety of cellular activities AQ16_5563 SM00448 cheY-homologous receiver domain AQ16_5563 SM00862 Transcriptional regulatory protein, C terminal AQ16_5564 SM00387 Histidine kinase-like ATPases AQ16_5564 SM00388 His Kinase A (phosphoacceptor) domain AQ16_5568 SM00758 AQ16_5568 AQ16_5576 SM00857 Resolvase, N terminal domain AQ16_5594 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_5611 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_5615 SM00858 AQ16_5615 AQ16_566 SM00382 ATPases associated with a variety of cellular activities AQ16_5671 SM00725 NEAr Transporter domain AQ16_5675 SM00014 Acid phosphatase homologues AQ16_5679 SM00984 UDP binding domain AQ16_570 SM00448 cheY-homologous receiver domain AQ16_570 SM00862 Transcriptional regulatory protein, C terminal AQ16_5700 SM00857 Resolvase, N terminal domain AQ16_5705 SM00758 AQ16_5705 AQ16_5706 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_571 SM00387 Histidine kinase-like ATPases AQ16_571 SM00388 His Kinase A (phosphoacceptor) domain AQ16_572 SM00387 Histidine kinase-like ATPases AQ16_572 SM00388 His Kinase A (phosphoacceptor) domain AQ16_5725 SM00860 SMI1 / KNR4 family AQ16_573 SM00448 cheY-homologous receiver domain AQ16_573 SM00862 Transcriptional regulatory protein, C terminal AQ16_5733 SM00954 Region found in RelA / SpoT proteins AQ16_5739 SM00028 Tetratricopeptide repeats AQ16_574 SM00382 ATPases associated with a variety of cellular activities AQ16_5742 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AQ16_5746 SM00318 Staphylococcal nuclease homologues AQ16_5748 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AQ16_5748 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AQ16_5748 SM00493 AQ16_5748 AQ16_5759 SM00507 HNH nucleases AQ16_576 SM00287 Bacterial SH3 domain homologues AQ16_5760 SM00487 DEAD-like helicases superfamily AQ16_5778 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AQ16_5811 SM00530 Helix-turn-helix XRE-family like proteins AQ16_5814 SM00843 AQ16_5814 AQ16_5817 SM00864 Tubulin/FtsZ family, GTPase domain AQ16_5839 SM00646 AQ16_5839 AQ16_5843 SM00422 helix_turn_helix, mercury resistance AQ16_5853 SM00530 Helix-turn-helix XRE-family like proteins AQ16_5854 SM00530 Helix-turn-helix XRE-family like proteins AQ16_5855 SM01040 BRO family, N-terminal domain AQ16_5865 SM00497 Intron encoded nuclease repeat motif AQ16_587 SM00382 ATPases associated with a variety of cellular activities AQ16_5871 SM00382 ATPases associated with a variety of cellular activities AQ16_588 SM00382 ATPases associated with a variety of cellular activities AQ16_59 SM00448 cheY-homologous receiver domain AQ16_59 SM00862 Transcriptional regulatory protein, C terminal AQ16_593 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_599 SM00382 ATPases associated with a variety of cellular activities AQ16_60 SM00387 Histidine kinase-like ATPases AQ16_60 SM00388 His Kinase A (phosphoacceptor) domain AQ16_600 SM00382 ATPases associated with a variety of cellular activities AQ16_607 SM00833 Cobalamin synthesis protein cobW C-terminal domain AQ16_636 SM00344 helix_turn_helix ASNC type AQ16_639 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AQ16_639 SM00493 AQ16_639 AQ16_642 SM01011 Aminopeptidase P, N-terminal domain AQ16_650 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AQ16_652 SM01133 AQ16_652 AQ16_665 SM00450 Rhodanese Homology Domain AQ16_668 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AQ16_668 SM00387 Histidine kinase-like ATPases AQ16_668 SM00388 His Kinase A (phosphoacceptor) domain AQ16_669 SM00448 cheY-homologous receiver domain AQ16_669 SM00862 Transcriptional regulatory protein, C terminal AQ16_676 SM00850 LytTr DNA-binding domain AQ16_683 SM00854 Bacterial capsule synthesis protein PGA_cap AQ16_714 SM00047 Lysozyme subfamily 2 AQ16_715 SM00646 AQ16_715 AQ16_722 SM00530 Helix-turn-helix XRE-family like proteins AQ16_725 SM00487 DEAD-like helicases superfamily AQ16_725 SM00490 helicase superfamily c-terminal domain AQ16_726 SM00448 cheY-homologous receiver domain AQ16_727 SM00387 Histidine kinase-like ATPases AQ16_728 SM00919 Malic enzyme, NAD binding domain AQ16_728 SM01274 AQ16_728 AQ16_73 SM00878 Biotin carboxylase C-terminal domain AQ16_732 SM00155 Phospholipase D. Active site motifs. AQ16_737 SM00382 ATPases associated with a variety of cellular activities AQ16_739 SM00421 helix_turn_helix, Lux Regulon AQ16_739 SM00448 cheY-homologous receiver domain AQ16_746 SM00530 Helix-turn-helix XRE-family like proteins AQ16_763 SM00422 helix_turn_helix, mercury resistance AQ16_768 SM00833 Cobalamin synthesis protein cobW C-terminal domain AQ16_770 SM00345 helix_turn_helix gluconate operon transcriptional repressor AQ16_770 SM00895 AQ16_770 AQ16_778 SM00347 helix_turn_helix multiple antibiotic resistance protein AQ16_783 SM00855 Phosphoglycerate mutase family AQ16_786 SM00835 Cupin AQ16_79 SM00382 ATPases associated with a variety of cellular activities AQ16_790 SM00849 Metallo-beta-lactamase superfamily AQ16_790 SM01027 Beta-Casp domain AQ16_793 SM00382 ATPases associated with a variety of cellular activities AQ16_798 SM00530 Helix-turn-helix XRE-family like proteins AQ16_804 SM01321 AQ16_804 AQ16_814 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AQ16_816 SM00382 ATPases associated with a variety of cellular activities AQ16_816 SM00962 SRP54-type protein, GTPase domain AQ16_833 SM00260 Two component signalling adaptor domain AQ16_833 SM00448 cheY-homologous receiver domain AQ16_840 SM00382 ATPases associated with a variety of cellular activities AQ16_855 SM00138 Methyltransferase, chemotaxis proteins AQ16_859 SM00073 Histidine Phosphotransfer domain AQ16_859 SM00260 Two component signalling adaptor domain AQ16_859 SM00387 Histidine kinase-like ATPases AQ16_859 SM01231 AQ16_859 AQ16_860 SM00448 cheY-homologous receiver domain AQ16_878 SM00422 helix_turn_helix, mercury resistance AQ16_878 SM00871 Bacterial transcription activator, effector binding domain AQ16_879 SM00849 Metallo-beta-lactamase superfamily AQ16_889 SM00357 Cold shock protein domain AQ16_911 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AQ16_911 SM00475 5'-3' exonuclease AQ16_917 SM00450 Rhodanese Homology Domain AQ16_929 SM00491 AQ16_929 AQ16_931 SM00981 AQ16_931 AQ16_942 SM00060 Fibronectin type 3 domain AQ16_944 SM00478 endonuclease III AQ16_944 SM00525 AQ16_944 AQ16_949 SM00479 AQ16_949 AQ16_949 SM00491 AQ16_949 AQ16_958 SM00851 MGS-like domain AQ16_962 SM00986 Uracil DNA glycosylase superfamily AQ16_962 SM00987 UreE urease accessory protein, C-terminal domain AQ16_971 SM00914 AQ16_971 AQ16_972 SM00028 Tetratricopeptide repeats AQ16_976 SM00562 AQ16_976 AQ16_981 SM00411 bacterial (prokaryotic) histone like domain AQ16_993 SM00316 Ribosomal protein S1-like RNA-binding domain AQ16_996 SM00870 AQ16_996 AQ16_998 SM00644 AQ16_998