CSW12_00020 SM01001 AIR carboxylase CSW12_00030 SM00998 Adenylosuccinate lyase C-terminus CSW12_00045 SM01211 CSW12_00045 CSW12_00070 SM00798 AICARFT/IMPCHase bienzyme CSW12_00070 SM00851 MGS-like domain CSW12_00075 SM01209 CSW12_00075 CSW12_00075 SM01210 CSW12_00075 CSW12_00095 SM00244 prohibitin homologues CSW12_00115 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSW12_00115 SM00292 breast cancer carboxy-terminal domain CSW12_00115 SM00532 Ligase N family CSW12_00150 SM00382 ATPases associated with a variety of cellular activities CSW12_00150 SM00930 CSW12_00150 CSW12_00180 SM00530 Helix-turn-helix XRE-family like proteins CSW12_00190 SM00530 Helix-turn-helix XRE-family like proteins CSW12_00230 SM01040 BRO family, N-terminal domain CSW12_00275 SM00507 HNH nucleases CSW12_00395 SM00287 Bacterial SH3 domain homologues CSW12_00395 SM00646 CSW12_00395 CSW12_00435 SM00845 GatB domain CSW12_00440 SM00046 Diacylglycerol kinase catalytic domain (presumed) CSW12_00455 SM00382 ATPases associated with a variety of cellular activities CSW12_00530 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CSW12_00575 SM01007 Class II Aldolase and Adducin N-terminal domain CSW12_00640 SM00387 Histidine kinase-like ATPases CSW12_00640 SM00388 His Kinase A (phosphoacceptor) domain CSW12_00685 SM00062 Bacterial periplasmic substrate-binding proteins CSW12_00685 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CSW12_00690 SM00382 ATPases associated with a variety of cellular activities CSW12_00695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_00695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_00725 SM00100 Cyclic nucleotide-monophosphate binding domain CSW12_00725 SM00419 helix_turn_helix, cAMP Regulatory protein CSW12_00745 SM00642 Alpha-amylase domain CSW12_00770 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CSW12_00770 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CSW12_00770 SM00493 CSW12_00770 CSW12_00790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_00790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_00815 SM00382 ATPases associated with a variety of cellular activities CSW12_00820 SM00382 ATPases associated with a variety of cellular activities CSW12_00825 SM00060 Fibronectin type 3 domain CSW12_00825 SM00636 CSW12_00825 CSW12_00825 SM00637 CSW12_00825 CSW12_00865 SM00530 Helix-turn-helix XRE-family like proteins CSW12_00885 SM00946 Prolyl-tRNA synthetase, C-terminal CSW12_00930 SM00831 Cation transporter/ATPase, N-terminus CSW12_00940 SM00226 Low molecular weight phosphatase family CSW12_01035 SM00478 endonuclease III CSW12_01055 SM00382 ATPases associated with a variety of cellular activities CSW12_01080 SM00530 Helix-turn-helix XRE-family like proteins CSW12_01135 SM00984 UDP binding domain CSW12_01220 SM00478 endonuclease III CSW12_01220 SM00525 CSW12_01220 CSW12_01245 SM00382 ATPases associated with a variety of cellular activities CSW12_01265 SM00382 ATPases associated with a variety of cellular activities CSW12_01430 SM00567 E-Z type HEAT repeats CSW12_01445 SM00052 Putative diguanylate phosphodiesterase CSW12_01445 SM00091 PAS domain CSW12_01445 SM00267 diguanylate cyclase CSW12_01455 SM00763 PrkA AAA domain CSW12_01470 SM00365 Leucine-rich repeat, SDS22-like subfamily CSW12_01470 SM00369 Leucine-rich repeats, typical (most populated) subfamily CSW12_01470 SM00725 NEAr Transporter domain CSW12_01485 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CSW12_01495 SM00244 prohibitin homologues CSW12_01500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_01500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_01505 SM00091 PAS domain CSW12_01505 SM00387 Histidine kinase-like ATPases CSW12_01510 SM00448 cheY-homologous receiver domain CSW12_01530 SM00248 ankyrin repeats CSW12_01545 SM00382 ATPases associated with a variety of cellular activities CSW12_01570 SM00448 cheY-homologous receiver domain CSW12_01570 SM00862 Transcriptional regulatory protein, C terminal CSW12_01575 SM00387 Histidine kinase-like ATPases CSW12_01575 SM00388 His Kinase A (phosphoacceptor) domain CSW12_01590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_01590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_01595 SM00387 Histidine kinase-like ATPases CSW12_01600 SM00448 cheY-homologous receiver domain CSW12_01610 SM00919 Malic enzyme, NAD binding domain CSW12_01610 SM01274 CSW12_01610 CSW12_01625 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_01635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_01635 SM00387 Histidine kinase-like ATPases CSW12_01635 SM00388 His Kinase A (phosphoacceptor) domain CSW12_01640 SM00448 cheY-homologous receiver domain CSW12_01640 SM00862 Transcriptional regulatory protein, C terminal CSW12_01665 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CSW12_01665 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CSW12_01680 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CSW12_01680 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CSW12_01690 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_01755 SM01091 Transporter associated domain CSW12_01770 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_01800 SM00382 ATPases associated with a variety of cellular activities CSW12_01825 SM00327 von Willebrand factor (vWF) type A domain CSW12_01830 SM00382 ATPases associated with a variety of cellular activities CSW12_01835 SM00155 Phospholipase D. Active site motifs. CSW12_01845 SM00052 Putative diguanylate phosphodiesterase CSW12_01845 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CSW12_01845 SM00267 diguanylate cyclase CSW12_01855 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_01855 SM00866 CSW12_01855 CSW12_01865 SM00642 Alpha-amylase domain CSW12_01895 SM00382 ATPases associated with a variety of cellular activities CSW12_01900 SM00062 Bacterial periplasmic substrate-binding proteins CSW12_01900 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CSW12_01950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_01950 SM00387 Histidine kinase-like ATPases CSW12_01950 SM00388 His Kinase A (phosphoacceptor) domain CSW12_01955 SM00448 cheY-homologous receiver domain CSW12_01955 SM00862 Transcriptional regulatory protein, C terminal CSW12_01995 SM00382 ATPases associated with a variety of cellular activities CSW12_02000 SM00382 ATPases associated with a variety of cellular activities CSW12_02010 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_02020 SM00354 helix_turn _helix lactose operon repressor CSW12_02050 SM00530 Helix-turn-helix XRE-family like proteins CSW12_02145 SM00507 HNH nucleases CSW12_02250 SM00287 Bacterial SH3 domain homologues CSW12_02250 SM00644 CSW12_02250 CSW12_02340 SM00770 Zinc dependent phospholipase C (alpha toxin) CSW12_02360 SM00530 Helix-turn-helix XRE-family like proteins CSW12_02365 SM00530 Helix-turn-helix XRE-family like proteins CSW12_02370 SM00530 Helix-turn-helix XRE-family like proteins CSW12_02410 SM00530 Helix-turn-helix XRE-family like proteins CSW12_02480 SM00635 Bacterial Ig-like domain 2 CSW12_02575 SM00857 Resolvase, N terminal domain CSW12_02615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_02625 SM00530 Helix-turn-helix XRE-family like proteins CSW12_02675 SM00530 Helix-turn-helix XRE-family like proteins CSW12_02775 SM00899 CSW12_02775 CSW12_02925 SM00116 Domain in cystathionine beta-synthase and other proteins. CSW12_02945 SM00287 Bacterial SH3 domain homologues CSW12_02955 SM00382 ATPases associated with a variety of cellular activities CSW12_03050 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_03175 SM00382 ATPases associated with a variety of cellular activities CSW12_03190 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_03210 SM00450 Rhodanese Homology Domain CSW12_03220 SM00450 Rhodanese Homology Domain CSW12_03225 SM00450 Rhodanese Homology Domain CSW12_03225 SM00849 Metallo-beta-lactamase superfamily CSW12_03235 SM00450 Rhodanese Homology Domain CSW12_03240 SM00450 Rhodanese Homology Domain CSW12_03265 SM00829 Enoylreductase CSW12_03320 SM00287 Bacterial SH3 domain homologues CSW12_03330 SM00382 ATPases associated with a variety of cellular activities CSW12_03390 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CSW12_03490 SM00344 helix_turn_helix ASNC type CSW12_03505 SM00422 helix_turn_helix, mercury resistance CSW12_03555 SM01060 CSW12_03555 CSW12_03600 SM00382 ATPases associated with a variety of cellular activities CSW12_03605 SM00382 ATPases associated with a variety of cellular activities CSW12_03615 SM00062 Bacterial periplasmic substrate-binding proteins CSW12_03615 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CSW12_03625 SM00382 ATPases associated with a variety of cellular activities CSW12_03660 SM00387 Histidine kinase-like ATPases CSW12_03665 SM00421 helix_turn_helix, Lux Regulon CSW12_03665 SM00448 cheY-homologous receiver domain CSW12_03715 SM00644 CSW12_03715 CSW12_03720 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_03760 SM00047 Lysozyme subfamily 2 CSW12_03805 SM00646 CSW12_03805 CSW12_03850 SM00382 ATPases associated with a variety of cellular activities CSW12_03855 SM00382 ATPases associated with a variety of cellular activities CSW12_03865 SM00849 Metallo-beta-lactamase superfamily CSW12_03905 SM00091 PAS domain CSW12_03905 SM00387 Histidine kinase-like ATPases CSW12_03910 SM00448 cheY-homologous receiver domain CSW12_03925 SM00487 DEAD-like helicases superfamily CSW12_03925 SM00490 helicase superfamily c-terminal domain CSW12_03935 SM00487 DEAD-like helicases superfamily CSW12_03935 SM00490 helicase superfamily c-terminal domain CSW12_03950 SM00422 helix_turn_helix, mercury resistance CSW12_04105 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_04130 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_04175 SM01120 CSW12_04175 CSW12_04205 SM00530 Helix-turn-helix XRE-family like proteins CSW12_04230 SM00460 Transglutaminase/protease-like homologues CSW12_04320 SM00331 Sigma factor PP2C-like phosphatases CSW12_04320 SM00448 cheY-homologous receiver domain CSW12_04330 SM00138 Methyltransferase, chemotaxis proteins CSW12_04335 SM00387 Histidine kinase-like ATPases CSW12_04335 SM00388 His Kinase A (phosphoacceptor) domain CSW12_04335 SM00448 cheY-homologous receiver domain CSW12_04375 SM00829 Enoylreductase CSW12_04410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_04465 SM00835 Cupin CSW12_04470 SM00530 Helix-turn-helix XRE-family like proteins CSW12_04545 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_04565 SM00382 ATPases associated with a variety of cellular activities CSW12_04765 SM00354 helix_turn _helix lactose operon repressor CSW12_04775 SM00849 Metallo-beta-lactamase superfamily CSW12_04815 SM00382 ATPases associated with a variety of cellular activities CSW12_04845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_04860 SM00342 helix_turn_helix, arabinose operon control protein CSW12_04860 SM00871 Bacterial transcription activator, effector binding domain CSW12_04875 SM00387 Histidine kinase-like ATPases CSW12_04875 SM00388 His Kinase A (phosphoacceptor) domain CSW12_04880 SM00448 cheY-homologous receiver domain CSW12_04880 SM00862 Transcriptional regulatory protein, C terminal CSW12_04905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_04905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_04950 SM00357 Cold shock protein domain CSW12_05065 SM00857 Resolvase, N terminal domain CSW12_05070 SM00530 Helix-turn-helix XRE-family like proteins CSW12_05075 SM00530 Helix-turn-helix XRE-family like proteins CSW12_05080 SM00530 Helix-turn-helix XRE-family like proteins CSW12_05120 SM00885 D5 N terminal like CSW12_05130 SM00891 ERCC4 domain CSW12_05160 SM00507 HNH nucleases CSW12_05300 SM01060 CSW12_05300 CSW12_05310 SM00642 Alpha-amylase domain CSW12_05315 SM00530 Helix-turn-helix XRE-family like proteins CSW12_05335 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_05400 SM00382 ATPases associated with a variety of cellular activities CSW12_05400 SM01086 C-terminal, D2-small domain, of ClpB protein CSW12_05430 SM00825 Beta-ketoacyl synthase CSW12_05480 SM00382 ATPases associated with a variety of cellular activities CSW12_05485 SM00382 ATPases associated with a variety of cellular activities CSW12_05525 SM00155 Phospholipase D. Active site motifs. CSW12_05555 SM01118 CSW12_05555 CSW12_05565 SM00954 Region found in RelA / SpoT proteins CSW12_05715 SM00100 Cyclic nucleotide-monophosphate binding domain CSW12_05810 SM01324 CSW12_05810 CSW12_05865 SM00861 Transketolase, pyrimidine binding domain CSW12_05870 SM00530 Helix-turn-helix XRE-family like proteins CSW12_05915 SM00382 ATPases associated with a variety of cellular activities CSW12_05975 SM00530 Helix-turn-helix XRE-family like proteins CSW12_05995 SM00382 ATPases associated with a variety of cellular activities CSW12_06015 SM00014 Acid phosphatase homologues CSW12_06065 SM00448 cheY-homologous receiver domain CSW12_06065 SM00862 Transcriptional regulatory protein, C terminal CSW12_06070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_06070 SM00387 Histidine kinase-like ATPases CSW12_06070 SM00388 His Kinase A (phosphoacceptor) domain CSW12_06075 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_06075 SM00895 CSW12_06075 CSW12_06145 SM00822 CSW12_06145 CSW12_06185 SM00382 ATPases associated with a variety of cellular activities CSW12_06210 SM00420 helix_turn_helix, Deoxyribose operon repressor CSW12_06210 SM01134 CSW12_06210 CSW12_06220 SM00365 Leucine-rich repeat, SDS22-like subfamily CSW12_06220 SM00369 Leucine-rich repeats, typical (most populated) subfamily CSW12_06220 SM00725 NEAr Transporter domain CSW12_06225 SM01007 Class II Aldolase and Adducin N-terminal domain CSW12_06245 SM00387 Histidine kinase-like ATPases CSW12_06245 SM00388 His Kinase A (phosphoacceptor) domain CSW12_06250 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_06270 SM00387 Histidine kinase-like ATPases CSW12_06270 SM00388 His Kinase A (phosphoacceptor) domain CSW12_06345 SM00465 GIY-YIG type nucleases (URI domain) CSW12_06355 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_06360 SM00382 ATPases associated with a variety of cellular activities CSW12_06370 SM00382 ATPases associated with a variety of cellular activities CSW12_06390 SM00344 helix_turn_helix ASNC type CSW12_06530 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_06605 SM00917 LeuA allosteric (dimerisation) domain CSW12_06610 SM01329 CSW12_06610 CSW12_06800 SM00387 Histidine kinase-like ATPases CSW12_06805 SM00421 helix_turn_helix, Lux Regulon CSW12_06805 SM00448 cheY-homologous receiver domain CSW12_06905 SM00091 PAS domain CSW12_06905 SM00387 Histidine kinase-like ATPases CSW12_06905 SM00388 His Kinase A (phosphoacceptor) domain CSW12_06925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_06925 SM00387 Histidine kinase-like ATPases CSW12_06925 SM00388 His Kinase A (phosphoacceptor) domain CSW12_06975 SM00363 S4 RNA-binding domain CSW12_06995 SM00448 cheY-homologous receiver domain CSW12_06995 SM00862 Transcriptional regulatory protein, C terminal CSW12_07000 SM00091 PAS domain CSW12_07000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_07000 SM00387 Histidine kinase-like ATPases CSW12_07000 SM00388 His Kinase A (phosphoacceptor) domain CSW12_07010 SM00257 Lysin motif CSW12_07040 SM00487 DEAD-like helicases superfamily CSW12_07040 SM00490 helicase superfamily c-terminal domain CSW12_07050 SM00257 Lysin motif CSW12_07060 SM00422 helix_turn_helix, mercury resistance CSW12_07070 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CSW12_07085 SM00644 CSW12_07085 CSW12_07095 SM00870 CSW12_07095 CSW12_07120 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_07170 SM00354 helix_turn _helix lactose operon repressor CSW12_07270 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CSW12_07290 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_07305 SM00382 ATPases associated with a variety of cellular activities CSW12_07310 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_07320 SM00936 Penicillin-binding protein 5, C-terminal domain CSW12_07330 SM00387 Histidine kinase-like ATPases CSW12_07430 SM00849 Metallo-beta-lactamase superfamily CSW12_07445 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_07445 SM00866 CSW12_07445 CSW12_07455 SM01061 CAT RNA binding domain CSW12_07490 SM00267 diguanylate cyclase CSW12_07520 SM01007 Class II Aldolase and Adducin N-terminal domain CSW12_07605 SM00382 ATPases associated with a variety of cellular activities CSW12_07675 SM00382 ATPases associated with a variety of cellular activities CSW12_07680 SM00642 Alpha-amylase domain CSW12_07685 SM00642 Alpha-amylase domain CSW12_07705 SM00354 helix_turn _helix lactose operon repressor CSW12_07720 SM00387 Histidine kinase-like ATPases CSW12_07720 SM00388 His Kinase A (phosphoacceptor) domain CSW12_07810 SM00052 Putative diguanylate phosphodiesterase CSW12_07875 SM00849 Metallo-beta-lactamase superfamily CSW12_07910 SM00861 Transketolase, pyrimidine binding domain CSW12_07990 SM00838 Elongation factor G C-terminus CSW12_08015 SM00670 Large family of predicted nucleotide-binding domains CSW12_08040 SM00878 Biotin carboxylase C-terminal domain CSW12_08105 SM00855 Phosphoglycerate mutase family CSW12_08145 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSW12_08165 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains CSW12_08200 SM00740 CSW12_08200 CSW12_08205 SM00740 CSW12_08205 CSW12_08245 SM00842 Cell division protein FtsA CSW12_08250 SM00864 Tubulin/FtsZ family, GTPase domain CSW12_08250 SM00865 Tubulin/FtsZ family, C-terminal domain CSW12_08295 SM00363 S4 RNA-binding domain CSW12_08320 SM00363 S4 RNA-binding domain CSW12_08345 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CSW12_08350 SM00851 MGS-like domain CSW12_08350 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CSW12_08350 SM01209 CSW12_08350 CSW12_08365 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CSW12_08425 SM00831 Cation transporter/ATPase, N-terminus CSW12_08440 SM00072 Guanylate kinase homologues. CSW12_08445 SM01409 CSW12_08445 CSW12_08455 SM00487 DEAD-like helicases superfamily CSW12_08455 SM00490 helicase superfamily c-terminal domain CSW12_08480 SM00331 Sigma factor PP2C-like phosphatases CSW12_08480 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CSW12_08485 SM00220 Serine/Threonine protein kinases, catalytic domain CSW12_08485 SM00740 CSW12_08485 CSW12_08500 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CSW12_08520 SM01120 CSW12_08520 CSW12_08520 SM01121 CSW12_08520 CSW12_08525 SM00487 DEAD-like helicases superfamily CSW12_08525 SM00490 helicase superfamily c-terminal domain CSW12_08540 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CSW12_08545 SM00822 CSW12_08545 CSW12_08555 SM00358 Double-stranded RNA binding motif CSW12_08555 SM00535 Ribonuclease III family CSW12_08560 SM00968 SMC proteins Flexible Hinge Domain CSW12_08565 SM00382 ATPases associated with a variety of cellular activities CSW12_08565 SM00962 SRP54-type protein, GTPase domain CSW12_08565 SM00963 SRP54-type protein, helical bundle domain CSW12_08575 SM00382 ATPases associated with a variety of cellular activities CSW12_08575 SM00962 SRP54-type protein, GTPase domain CSW12_08575 SM00963 SRP54-type protein, helical bundle domain CSW12_08625 SM00881 CoA binding domain CSW12_08635 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CSW12_08635 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CSW12_08635 SM00493 CSW12_08635 CSW12_08655 SM00382 ATPases associated with a variety of cellular activities CSW12_08655 SM01086 C-terminal, D2-small domain, of ClpB protein CSW12_08700 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSW12_08710 SM00479 CSW12_08710 CSW12_08710 SM00481 DNA polymerase alpha chain like domain CSW12_08720 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_08720 SM00322 K homology RNA-binding domain CSW12_08755 SM00904 Riboflavin kinase CSW12_08760 SM01387 CSW12_08760 CSW12_08765 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_08765 SM00322 K homology RNA-binding domain CSW12_08795 SM00859 Semialdehyde dehydrogenase, NAD binding domain CSW12_08805 SM01130 CSW12_08805 CSW12_08810 SM00849 Metallo-beta-lactamase superfamily CSW12_08825 SM00382 ATPases associated with a variety of cellular activities CSW12_08825 SM00843 CSW12_08825 CSW12_08835 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_08835 SM00866 CSW12_08835 CSW12_08845 SM00382 ATPases associated with a variety of cellular activities CSW12_08895 SM00852 Probable molybdopterin binding domain CSW12_08900 SM00382 ATPases associated with a variety of cellular activities CSW12_08910 SM00322 K homology RNA-binding domain CSW12_08910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_08940 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_08955 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CSW12_08955 SM00534 ATPase domain of DNA mismatch repair MUTS family CSW12_08960 SM00853 MutL C terminal dimerisation domain CSW12_08960 SM01340 CSW12_08960 CSW12_08990 SM00257 Lysin motif CSW12_09000 SM00148 Phospholipase C, catalytic domain (part); domain X CSW12_09010 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_09010 SM00866 CSW12_09010 CSW12_09020 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_09070 SM00052 Putative diguanylate phosphodiesterase CSW12_09070 SM00091 PAS domain CSW12_09070 SM00267 diguanylate cyclase CSW12_09100 SM00478 endonuclease III CSW12_09110 SM00342 helix_turn_helix, arabinose operon control protein CSW12_09135 SM00382 ATPases associated with a variety of cellular activities CSW12_09170 SM00411 bacterial (prokaryotic) histone like domain CSW12_09190 SM00636 CSW12_09190 CSW12_09225 SM00420 helix_turn_helix, Deoxyribose operon repressor CSW12_09225 SM01134 CSW12_09225 CSW12_09245 SM00287 Bacterial SH3 domain homologues CSW12_09275 SM00382 ATPases associated with a variety of cellular activities CSW12_09295 SM00422 helix_turn_helix, mercury resistance CSW12_09300 SM01230 CSW12_09300 CSW12_09325 SM00857 Resolvase, N terminal domain CSW12_09340 SM00062 Bacterial periplasmic substrate-binding proteins CSW12_09345 SM00382 ATPases associated with a variety of cellular activities CSW12_09360 SM00861 Transketolase, pyrimidine binding domain CSW12_09375 SM00382 ATPases associated with a variety of cellular activities CSW12_09380 SM00382 ATPases associated with a variety of cellular activities CSW12_09385 SM00287 Bacterial SH3 domain homologues CSW12_09385 SM00641 Glycosyl hydrolases family 25 CSW12_09445 SM00382 ATPases associated with a variety of cellular activities CSW12_09535 SM01058 CarD-like/TRCF domain CSW12_09570 SM00091 PAS domain CSW12_09570 SM00387 Histidine kinase-like ATPases CSW12_09570 SM00388 His Kinase A (phosphoacceptor) domain CSW12_09590 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CSW12_09595 SM00644 CSW12_09595 CSW12_09595 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. CSW12_09630 SM00530 Helix-turn-helix XRE-family like proteins CSW12_09665 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CSW12_09710 SM00382 ATPases associated with a variety of cellular activities CSW12_09725 SM00479 CSW12_09725 CSW12_09740 SM00257 Lysin motif CSW12_09740 SM00636 CSW12_09740 CSW12_09755 SM01207 CSW12_09755 CSW12_09770 SM00448 cheY-homologous receiver domain CSW12_09770 SM00862 Transcriptional regulatory protein, C terminal CSW12_09775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSW12_09780 SM00881 CoA binding domain CSW12_09790 SM00387 Histidine kinase-like ATPases CSW12_09790 SM00433 TopoisomeraseII CSW12_09795 SM00434 DNA Topoisomerase IV CSW12_09810 SM00420 helix_turn_helix, Deoxyribose operon repressor CSW12_09820 SM00382 ATPases associated with a variety of cellular activities CSW12_09920 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CSW12_09920 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CSW12_09940 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_09960 SM00852 Probable molybdopterin binding domain CSW12_10015 SM00822 CSW12_10015 CSW12_10070 SM01022 CSW12_10070 CSW12_10095 SM00357 Cold shock protein domain CSW12_10100 SM00479 CSW12_10100 CSW12_10145 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CSW12_10150 SM00387 Histidine kinase-like ATPases CSW12_10150 SM00388 His Kinase A (phosphoacceptor) domain CSW12_10195 SM00646 CSW12_10195 CSW12_10215 SM00052 Putative diguanylate phosphodiesterase CSW12_10215 SM00091 PAS domain CSW12_10215 SM00267 diguanylate cyclase CSW12_10230 SM00060 Fibronectin type 3 domain CSW12_10230 SM00495 Chitin-binding domain type 3 CSW12_10230 SM01276 CSW12_10230 CSW12_10270 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_10270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_10270 SM00319 Homologues of the ligand binding domain of Tar CSW12_10340 SM00060 Fibronectin type 3 domain CSW12_10340 SM00495 Chitin-binding domain type 3 CSW12_10345 SM00148 Phospholipase C, catalytic domain (part); domain X CSW12_10365 SM00450 Rhodanese Homology Domain CSW12_10365 SM00849 Metallo-beta-lactamase superfamily CSW12_10420 SM00028 Tetratricopeptide repeats CSW12_10435 SM00829 Enoylreductase CSW12_10440 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_10500 SM00422 helix_turn_helix, mercury resistance CSW12_10500 SM00871 Bacterial transcription activator, effector binding domain CSW12_10520 SM00642 Alpha-amylase domain CSW12_10530 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CSW12_10530 SM00534 ATPase domain of DNA mismatch repair MUTS family CSW12_10540 SM00855 Phosphoglycerate mutase family CSW12_10545 SM00829 Enoylreductase CSW12_10675 SM00829 Enoylreductase CSW12_10680 SM00849 Metallo-beta-lactamase superfamily CSW12_10745 SM00849 Metallo-beta-lactamase superfamily CSW12_10770 SM00382 ATPases associated with a variety of cellular activities CSW12_10785 SM00871 Bacterial transcription activator, effector binding domain CSW12_10830 SM00636 CSW12_10830 CSW12_10835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_10895 SM00382 ATPases associated with a variety of cellular activities CSW12_10920 SM00849 Metallo-beta-lactamase superfamily CSW12_10950 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_10950 SM00866 CSW12_10950 CSW12_10975 SM00914 CSW12_10975 CSW12_10990 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_11035 SM00829 Enoylreductase CSW12_11055 SM00861 Transketolase, pyrimidine binding domain CSW12_11060 SM01350 CSW12_11060 CSW12_11145 SM00422 helix_turn_helix, mercury resistance CSW12_11150 SM01091 Transporter associated domain CSW12_11175 SM00028 Tetratricopeptide repeats CSW12_11235 SM01266 CSW12_11235 CSW12_11295 SM00530 Helix-turn-helix XRE-family like proteins CSW12_11310 SM00382 ATPases associated with a variety of cellular activities CSW12_11390 SM00530 Helix-turn-helix XRE-family like proteins CSW12_11445 SM00382 ATPases associated with a variety of cellular activities CSW12_11490 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_11500 SM00382 ATPases associated with a variety of cellular activities CSW12_11520 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_11545 SM00854 Bacterial capsule synthesis protein PGA_cap CSW12_11570 SM00644 CSW12_11570 CSW12_11600 SM00342 helix_turn_helix, arabinose operon control protein CSW12_11665 SM00448 cheY-homologous receiver domain CSW12_11665 SM00862 Transcriptional regulatory protein, C terminal CSW12_11670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_11670 SM00387 Histidine kinase-like ATPases CSW12_11670 SM00388 His Kinase A (phosphoacceptor) domain CSW12_11685 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_11695 SM00382 ATPases associated with a variety of cellular activities CSW12_11780 SM00448 cheY-homologous receiver domain CSW12_11780 SM00862 Transcriptional regulatory protein, C terminal CSW12_11785 SM00387 Histidine kinase-like ATPases CSW12_11785 SM00388 His Kinase A (phosphoacceptor) domain CSW12_11880 SM00387 Histidine kinase-like ATPases CSW12_11880 SM00421 helix_turn_helix, Lux Regulon CSW12_11880 SM00448 cheY-homologous receiver domain CSW12_11910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_11910 SM00387 Histidine kinase-like ATPases CSW12_11910 SM00388 His Kinase A (phosphoacceptor) domain CSW12_11915 SM00448 cheY-homologous receiver domain CSW12_11915 SM00862 Transcriptional regulatory protein, C terminal CSW12_11935 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_11985 SM00344 helix_turn_helix ASNC type CSW12_12005 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_12020 SM00226 Low molecular weight phosphatase family CSW12_12145 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_12240 SM00849 Metallo-beta-lactamase superfamily CSW12_12310 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_12325 SM00346 helix_turn_helix isocitrate lyase regulation CSW12_12330 SM00796 Allophanate hydrolase subunit 1 CSW12_12335 SM00797 Allophanate hydrolase subunit 2 CSW12_12405 SM00382 ATPases associated with a variety of cellular activities CSW12_12415 SM00448 cheY-homologous receiver domain CSW12_12415 SM00862 Transcriptional regulatory protein, C terminal CSW12_12495 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_12520 SM00342 helix_turn_helix, arabinose operon control protein CSW12_12520 SM00871 Bacterial transcription activator, effector binding domain CSW12_12545 SM00773 Proposed nucleic acid binding domain CSW12_12560 SM00889 Elongation factor G, domain IV CSW12_12570 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_12625 SM01060 CSW12_12625 CSW12_12705 SM00530 Helix-turn-helix XRE-family like proteins CSW12_12715 SM00098 Alkaline phosphatase homologues CSW12_12755 SM00346 helix_turn_helix isocitrate lyase regulation CSW12_12775 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CSW12_12790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_12815 SM01133 CSW12_12815 CSW12_12835 SM00382 ATPases associated with a variety of cellular activities CSW12_12890 SM00287 Bacterial SH3 domain homologues CSW12_12930 SM00830 Chorismate mutase type II CSW12_12975 SM00382 ATPases associated with a variety of cellular activities CSW12_13005 SM00849 Metallo-beta-lactamase superfamily CSW12_13075 SM00028 Tetratricopeptide repeats CSW12_13090 SM00382 ATPases associated with a variety of cellular activities CSW12_13095 SM00062 Bacterial periplasmic substrate-binding proteins CSW12_13175 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_13180 SM00382 ATPases associated with a variety of cellular activities CSW12_13390 SM00448 cheY-homologous receiver domain CSW12_13390 SM00862 Transcriptional regulatory protein, C terminal CSW12_13395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_13395 SM00387 Histidine kinase-like ATPases CSW12_13395 SM00388 His Kinase A (phosphoacceptor) domain CSW12_13410 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CSW12_13430 SM00248 ankyrin repeats CSW12_13455 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CSW12_13520 SM00091 PAS domain CSW12_13520 SM00382 ATPases associated with a variety of cellular activities CSW12_13540 SM01130 CSW12_13540 CSW12_13560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_13575 SM01131 CSW12_13575 CSW12_13630 SM00341 Helicase and RNase D C-terminal CSW12_13630 SM00487 DEAD-like helicases superfamily CSW12_13630 SM00490 helicase superfamily c-terminal domain CSW12_13630 SM00956 CSW12_13630 CSW12_13720 SM00060 Fibronectin type 3 domain CSW12_13755 SM00116 Domain in cystathionine beta-synthase and other proteins. CSW12_13755 SM00382 ATPases associated with a variety of cellular activities CSW12_13820 SM00861 Transketolase, pyrimidine binding domain CSW12_13860 SM00420 helix_turn_helix, Deoxyribose operon repressor CSW12_13860 SM01134 CSW12_13860 CSW12_13880 SM00382 ATPases associated with a variety of cellular activities CSW12_14020 SM00829 Enoylreductase CSW12_14025 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_14040 SM00871 Bacterial transcription activator, effector binding domain CSW12_14060 SM00642 Alpha-amylase domain CSW12_14095 SM00382 ATPases associated with a variety of cellular activities CSW12_14110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_14110 SM00387 Histidine kinase-like ATPases CSW12_14110 SM00388 His Kinase A (phosphoacceptor) domain CSW12_14115 SM00448 cheY-homologous receiver domain CSW12_14115 SM00862 Transcriptional regulatory protein, C terminal CSW12_14195 SM00465 GIY-YIG type nucleases (URI domain) CSW12_14285 SM00480 DNA polymerase III beta subunit CSW12_14350 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_14365 SM00287 Bacterial SH3 domain homologues CSW12_14395 SM00422 helix_turn_helix, mercury resistance CSW12_14395 SM00871 Bacterial transcription activator, effector binding domain CSW12_14405 SM00422 helix_turn_helix, mercury resistance CSW12_14450 SM00740 CSW12_14450 CSW12_14455 SM00014 Acid phosphatase homologues CSW12_14460 SM00829 Enoylreductase CSW12_14540 SM00387 Histidine kinase-like ATPases CSW12_14540 SM00388 His Kinase A (phosphoacceptor) domain CSW12_14555 SM00382 ATPases associated with a variety of cellular activities CSW12_14590 SM00091 PAS domain CSW12_14590 SM00387 Histidine kinase-like ATPases CSW12_14590 SM00388 His Kinase A (phosphoacceptor) domain CSW12_14705 SM01209 CSW12_14705 CSW12_14710 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_14740 SM00382 ATPases associated with a variety of cellular activities CSW12_14755 SM00382 ATPases associated with a variety of cellular activities CSW12_14770 SM00387 Histidine kinase-like ATPases CSW12_14775 SM00448 cheY-homologous receiver domain CSW12_14775 SM00862 Transcriptional regulatory protein, C terminal CSW12_14855 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_14870 SM00342 helix_turn_helix, arabinose operon control protein CSW12_14905 SM00422 helix_turn_helix, mercury resistance CSW12_14905 SM00871 Bacterial transcription activator, effector binding domain CSW12_14940 SM00342 helix_turn_helix, arabinose operon control protein CSW12_14975 SM00448 cheY-homologous receiver domain CSW12_14975 SM00862 Transcriptional regulatory protein, C terminal CSW12_14980 SM00387 Histidine kinase-like ATPases CSW12_14980 SM00388 His Kinase A (phosphoacceptor) domain CSW12_15055 SM00878 Biotin carboxylase C-terminal domain CSW12_15085 SM00382 ATPases associated with a variety of cellular activities CSW12_15145 SM00116 Domain in cystathionine beta-synthase and other proteins. CSW12_15145 SM00924 MgtE intracellular N domain CSW12_15265 SM01022 CSW12_15265 CSW12_15280 SM00421 helix_turn_helix, Lux Regulon CSW12_15280 SM00448 cheY-homologous receiver domain CSW12_15285 SM00387 Histidine kinase-like ATPases CSW12_15290 SM00849 Metallo-beta-lactamase superfamily CSW12_15310 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_15325 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_15370 SM00530 Helix-turn-helix XRE-family like proteins CSW12_15375 SM00047 Lysozyme subfamily 2 CSW12_15425 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CSW12_15425 SM00091 PAS domain CSW12_15425 SM00387 Histidine kinase-like ATPases CSW12_15425 SM00388 His Kinase A (phosphoacceptor) domain CSW12_15450 SM00342 helix_turn_helix, arabinose operon control protein CSW12_15475 SM00465 GIY-YIG type nucleases (URI domain) CSW12_15510 SM00448 cheY-homologous receiver domain CSW12_15515 SM00387 Histidine kinase-like ATPases CSW12_15550 SM00823 Phosphopantetheine attachment site CSW12_15555 SM00823 Phosphopantetheine attachment site CSW12_15580 SM00936 Penicillin-binding protein 5, C-terminal domain CSW12_15600 SM00966 SpoVT / AbrB like domain CSW12_15605 SM00530 Helix-turn-helix XRE-family like proteins CSW12_15610 SM00421 helix_turn_helix, Lux Regulon CSW12_15685 SM00855 Phosphoglycerate mutase family CSW12_15690 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_15715 SM00487 DEAD-like helicases superfamily CSW12_15715 SM00490 helicase superfamily c-terminal domain CSW12_15725 SM00849 Metallo-beta-lactamase superfamily CSW12_15740 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_15755 SM01207 CSW12_15755 CSW12_15830 SM00835 Cupin CSW12_15855 SM00530 Helix-turn-helix XRE-family like proteins CSW12_15895 SM00382 ATPases associated with a variety of cellular activities CSW12_15900 SM00382 ATPases associated with a variety of cellular activities CSW12_15940 SM00859 Semialdehyde dehydrogenase, NAD binding domain CSW12_15965 SM00357 Cold shock protein domain CSW12_16000 SM00530 Helix-turn-helix XRE-family like proteins CSW12_16025 SM01059 Chloramphenicol acetyltransferase CSW12_16045 SM00849 Metallo-beta-lactamase superfamily CSW12_16060 SM00100 Cyclic nucleotide-monophosphate binding domain CSW12_16085 SM00849 Metallo-beta-lactamase superfamily CSW12_16125 SM00382 ATPases associated with a variety of cellular activities CSW12_16130 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CSW12_16135 SM00363 S4 RNA-binding domain CSW12_16175 SM00411 bacterial (prokaryotic) histone like domain CSW12_16195 SM00923 MbtH-like protein CSW12_16200 SM00823 Phosphopantetheine attachment site CSW12_16200 SM00824 Thioesterase CSW12_16220 SM00822 CSW12_16220 CSW12_16245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_16460 SM00014 Acid phosphatase homologues CSW12_16470 SM00219 Tyrosine kinase, catalytic domain CSW12_16515 SM00382 ATPases associated with a variety of cellular activities CSW12_16530 SM00882 Coenzyme A transferase CSW12_16535 SM00882 Coenzyme A transferase CSW12_16550 SM00387 Histidine kinase-like ATPases CSW12_16550 SM00388 His Kinase A (phosphoacceptor) domain CSW12_16565 SM01091 Transporter associated domain CSW12_16605 SM00382 ATPases associated with a variety of cellular activities CSW12_16640 SM01350 CSW12_16640 CSW12_16665 SM00829 Enoylreductase CSW12_16680 SM00421 helix_turn_helix, Lux Regulon CSW12_16680 SM00448 cheY-homologous receiver domain CSW12_16685 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CSW12_16760 SM00530 Helix-turn-helix XRE-family like proteins CSW12_16805 SM00646 CSW12_16805 CSW12_16870 SM00563 Phosphate acyltransferases CSW12_16925 SM00382 ATPases associated with a variety of cellular activities CSW12_16940 SM00530 Helix-turn-helix XRE-family like proteins CSW12_17040 SM00028 Tetratricopeptide repeats CSW12_17050 SM00382 ATPases associated with a variety of cellular activities CSW12_17065 SM00327 von Willebrand factor (vWF) type A domain CSW12_17110 SM00028 Tetratricopeptide repeats CSW12_17120 SM00836 DALR anticodon binding domain CSW12_17120 SM01016 Arginyl tRNA synthetase N terminal dom CSW12_17145 SM00567 E-Z type HEAT repeats CSW12_17145 SM00932 Scaffold protein Nfu/NifU N terminal CSW12_17175 SM00382 ATPases associated with a variety of cellular activities CSW12_17180 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_17290 SM00852 Probable molybdopterin binding domain CSW12_17300 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_17305 SM00100 Cyclic nucleotide-monophosphate binding domain CSW12_17305 SM00419 helix_turn_helix, cAMP Regulatory protein CSW12_17325 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CSW12_17340 SM00460 Transglutaminase/protease-like homologues CSW12_17355 SM00849 Metallo-beta-lactamase superfamily CSW12_17375 SM00829 Enoylreductase CSW12_17395 SM00487 DEAD-like helicases superfamily CSW12_17395 SM00490 helicase superfamily c-terminal domain CSW12_17505 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_17535 SM01005 Alanine racemase, C-terminal domain CSW12_17550 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_17560 SM00855 Phosphoglycerate mutase family CSW12_17570 SM00244 prohibitin homologues CSW12_17660 SM01091 Transporter associated domain CSW12_17685 SM00155 Phospholipase D. Active site motifs. CSW12_17740 SM00855 Phosphoglycerate mutase family CSW12_17795 SM00833 Cobalamin synthesis protein cobW C-terminal domain CSW12_17860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_17860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_17895 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_17905 SM00966 SpoVT / AbrB like domain CSW12_17930 SM00460 Transglutaminase/protease-like homologues CSW12_17955 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_18025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_18025 SM00387 Histidine kinase-like ATPases CSW12_18025 SM00388 His Kinase A (phosphoacceptor) domain CSW12_18030 SM00448 cheY-homologous receiver domain CSW12_18030 SM00862 Transcriptional regulatory protein, C terminal CSW12_18105 SM00387 Histidine kinase-like ATPases CSW12_18105 SM00388 His Kinase A (phosphoacceptor) domain CSW12_18110 SM00448 cheY-homologous receiver domain CSW12_18110 SM00862 Transcriptional regulatory protein, C terminal CSW12_18125 SM00287 Bacterial SH3 domain homologues CSW12_18185 SM00382 ATPases associated with a variety of cellular activities CSW12_18190 SM00382 ATPases associated with a variety of cellular activities CSW12_18210 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_18245 SM00382 ATPases associated with a variety of cellular activities CSW12_18250 SM00382 ATPases associated with a variety of cellular activities CSW12_18260 SM00833 Cobalamin synthesis protein cobW C-terminal domain CSW12_18360 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CSW12_18360 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CSW12_18360 SM00493 CSW12_18360 CSW12_18385 SM01011 Aminopeptidase P, N-terminal domain CSW12_18405 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CSW12_18415 SM01133 CSW12_18415 CSW12_18465 SM01276 CSW12_18465 CSW12_18510 SM00450 Rhodanese Homology Domain CSW12_18600 SM00850 LytTr DNA-binding domain CSW12_18625 SM00854 Bacterial capsule synthesis protein PGA_cap CSW12_18820 SM00530 Helix-turn-helix XRE-family like proteins CSW12_18840 SM00487 DEAD-like helicases superfamily CSW12_18840 SM00490 helicase superfamily c-terminal domain CSW12_18845 SM00448 cheY-homologous receiver domain CSW12_18850 SM00387 Histidine kinase-like ATPases CSW12_18855 SM00919 Malic enzyme, NAD binding domain CSW12_18855 SM01274 CSW12_18855 CSW12_18875 SM00155 Phospholipase D. Active site motifs. CSW12_18890 SM00382 ATPases associated with a variety of cellular activities CSW12_18900 SM00421 helix_turn_helix, Lux Regulon CSW12_18900 SM00448 cheY-homologous receiver domain CSW12_18940 SM00530 Helix-turn-helix XRE-family like proteins CSW12_18950 SM00028 Tetratricopeptide repeats CSW12_19015 SM00422 helix_turn_helix, mercury resistance CSW12_19045 SM00833 Cobalamin synthesis protein cobW C-terminal domain CSW12_19060 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_19060 SM00895 CSW12_19060 CSW12_19100 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_19160 SM00849 Metallo-beta-lactamase superfamily CSW12_19160 SM01027 Beta-Casp domain CSW12_19175 SM00382 ATPases associated with a variety of cellular activities CSW12_19195 SM00530 Helix-turn-helix XRE-family like proteins CSW12_19240 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CSW12_19255 SM00382 ATPases associated with a variety of cellular activities CSW12_19255 SM00962 SRP54-type protein, GTPase domain CSW12_19335 SM00260 Two component signalling adaptor domain CSW12_19335 SM00448 cheY-homologous receiver domain CSW12_19370 SM00382 ATPases associated with a variety of cellular activities CSW12_19445 SM00138 Methyltransferase, chemotaxis proteins CSW12_19465 SM00073 Histidine Phosphotransfer domain CSW12_19465 SM00260 Two component signalling adaptor domain CSW12_19465 SM00387 Histidine kinase-like ATPases CSW12_19465 SM01231 CSW12_19465 CSW12_19470 SM00448 cheY-homologous receiver domain CSW12_19555 SM00422 helix_turn_helix, mercury resistance CSW12_19555 SM00871 Bacterial transcription activator, effector binding domain CSW12_19605 SM00357 Cold shock protein domain CSW12_19715 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CSW12_19715 SM00475 5'-3' exonuclease CSW12_19755 SM00450 Rhodanese Homology Domain CSW12_19815 SM00491 CSW12_19815 CSW12_19825 SM00981 CSW12_19825 CSW12_19885 SM00060 Fibronectin type 3 domain CSW12_19895 SM00478 endonuclease III CSW12_19920 SM00479 CSW12_19920 CSW12_19920 SM00487 DEAD-like helicases superfamily CSW12_19920 SM00491 CSW12_19920 CSW12_19970 SM00851 MGS-like domain CSW12_19995 SM00986 Uracil DNA glycosylase superfamily CSW12_19995 SM00987 UreE urease accessory protein, C-terminal domain CSW12_20045 SM00914 CSW12_20045 CSW12_20050 SM00028 Tetratricopeptide repeats CSW12_20070 SM00562 CSW12_20070 CSW12_20095 SM00411 bacterial (prokaryotic) histone like domain CSW12_20135 SM00704 CDGSH-type zinc finger. Function unknown. CSW12_20165 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_20165 SM00876 Biotin and Thiamin Synthesis associated domain CSW12_20220 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_20255 SM00859 Semialdehyde dehydrogenase, NAD binding domain CSW12_20270 SM00849 Metallo-beta-lactamase superfamily CSW12_20295 SM00849 Metallo-beta-lactamase superfamily CSW12_20315 SM00831 Cation transporter/ATPase, N-terminus CSW12_20370 SM00382 ATPases associated with a variety of cellular activities CSW12_20380 SM00062 Bacterial periplasmic substrate-binding proteins CSW12_20380 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CSW12_20420 SM00861 Transketolase, pyrimidine binding domain CSW12_20440 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CSW12_20455 SM00091 PAS domain CSW12_20455 SM00382 ATPases associated with a variety of cellular activities CSW12_20485 SM00448 cheY-homologous receiver domain CSW12_20495 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSW12_20510 SM00363 S4 RNA-binding domain CSW12_20515 SM00861 Transketolase, pyrimidine binding domain CSW12_20550 SM00878 Biotin carboxylase C-terminal domain CSW12_20600 SM00382 ATPases associated with a variety of cellular activities CSW12_20620 SM00841 Elongation factor P, C-terminal CSW12_20620 SM01185 CSW12_20620 CSW12_20655 SM00529 Helix-turn-helix diphteria tox regulatory element CSW12_20685 SM00450 Rhodanese Homology Domain CSW12_20695 SM00354 helix_turn _helix lactose operon repressor CSW12_20745 SM00382 ATPases associated with a variety of cellular activities CSW12_20750 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_20785 SM00487 DEAD-like helicases superfamily CSW12_20785 SM00490 helicase superfamily c-terminal domain CSW12_20825 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CSW12_20870 SM00382 ATPases associated with a variety of cellular activities CSW12_20930 SM01018 B12 binding domain CSW12_20955 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_20965 SM00849 Metallo-beta-lactamase superfamily CSW12_21005 SM00382 ATPases associated with a variety of cellular activities CSW12_21070 SM00382 ATPases associated with a variety of cellular activities CSW12_21085 SM00518 AP endonuclease family 2 CSW12_21090 SM00487 DEAD-like helicases superfamily CSW12_21090 SM00490 helicase superfamily c-terminal domain CSW12_21125 SM00400 zinc finger CSW12_21125 SM00493 CSW12_21125 CSW12_21125 SM00766 DNA primase DnaG DnaB-binding CSW12_21145 SM00116 Domain in cystathionine beta-synthase and other proteins. CSW12_21180 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_21220 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_21235 SM00271 DnaJ molecular chaperone homology domain CSW12_21255 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_21265 SM00838 Elongation factor G C-terminus CSW12_21295 SM00849 Metallo-beta-lactamase superfamily CSW12_21335 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_21345 SM01103 CSW12_21345 CSW12_21400 SM00954 Region found in RelA / SpoT proteins CSW12_21410 SM00098 Alkaline phosphatase homologues CSW12_21440 SM00855 Phosphoglycerate mutase family CSW12_21485 SM00530 Helix-turn-helix XRE-family like proteins CSW12_21515 SM00382 ATPases associated with a variety of cellular activities CSW12_21615 SM00732 Likely ribonuclease with RNase H fold. CSW12_21625 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CSW12_21660 SM00028 Tetratricopeptide repeats CSW12_21680 SM00382 ATPases associated with a variety of cellular activities CSW12_21725 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_21725 SM00954 Region found in RelA / SpoT proteins CSW12_21770 SM01323 CSW12_21770 CSW12_21790 SM00382 ATPases associated with a variety of cellular activities CSW12_21795 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSW12_21820 SM00257 Lysin motif CSW12_21870 SM00382 ATPases associated with a variety of cellular activities CSW12_21875 SM00387 Histidine kinase-like ATPases CSW12_21880 SM00448 cheY-homologous receiver domain CSW12_21880 SM00862 Transcriptional regulatory protein, C terminal CSW12_21890 SM01317 CSW12_21890 CSW12_21985 SM00257 Lysin motif CSW12_21995 SM01004 Delta-aminolevulinic acid dehydratase CSW12_22020 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_22040 SM00382 ATPases associated with a variety of cellular activities CSW12_22040 SM00464 Found in ATP-dependent protease La (LON) CSW12_22045 SM00382 ATPases associated with a variety of cellular activities CSW12_22050 SM00382 ATPases associated with a variety of cellular activities CSW12_22050 SM00994 ClpX C4-type zinc finger CSW12_22050 SM01086 C-terminal, D2-small domain, of ClpB protein CSW12_22120 SM00909 Sporulation and spore germination CSW12_22150 SM00421 helix_turn_helix, Lux Regulon CSW12_22170 SM00530 Helix-turn-helix XRE-family like proteins CSW12_22195 SM00382 ATPases associated with a variety of cellular activities CSW12_22250 SM00465 GIY-YIG type nucleases (URI domain) CSW12_22260 SM00893 Electron transfer flavoprotein domain CSW12_22265 SM00893 Electron transfer flavoprotein domain CSW12_22345 SM00382 ATPases associated with a variety of cellular activities CSW12_22350 SM00387 Histidine kinase-like ATPases CSW12_22350 SM00388 His Kinase A (phosphoacceptor) domain CSW12_22355 SM00448 cheY-homologous receiver domain CSW12_22355 SM00862 Transcriptional regulatory protein, C terminal CSW12_22370 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CSW12_22385 SM00382 ATPases associated with a variety of cellular activities CSW12_22400 SM00725 NEAr Transporter domain CSW12_22405 SM00725 NEAr Transporter domain CSW12_22410 SM00725 NEAr Transporter domain CSW12_22420 SM00363 S4 RNA-binding domain CSW12_22430 SM00463 Small MutS-related domain CSW12_22430 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CSW12_22430 SM00534 ATPase domain of DNA mismatch repair MUTS family CSW12_22435 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSW12_22435 SM00481 DNA polymerase alpha chain like domain CSW12_22435 SM00483 DNA polymerase X family CSW12_22475 SM00873 B3/4 domain CSW12_22475 SM00874 tRNA synthetase B5 domain CSW12_22475 SM00896 Ferredoxin-fold anticodon binding domain CSW12_22485 SM00967 RNA 2'-O ribose methyltransferase substrate binding CSW12_22555 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CSW12_22570 SM00382 ATPases associated with a variety of cellular activities CSW12_22595 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CSW12_22610 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CSW12_22610 SM01232 CSW12_22610 CSW12_22615 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CSW12_22615 SM00474 3'-5' exonuclease CSW12_22615 SM00475 5'-3' exonuclease CSW12_22615 SM00482 DNA polymerase A domain CSW12_22620 SM00091 PAS domain CSW12_22620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_22620 SM00387 Histidine kinase-like ATPases CSW12_22620 SM00388 His Kinase A (phosphoacceptor) domain CSW12_22625 SM00448 cheY-homologous receiver domain CSW12_22625 SM00862 Transcriptional regulatory protein, C terminal CSW12_22650 SM01329 CSW12_22650 CSW12_22700 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_22705 SM00919 Malic enzyme, NAD binding domain CSW12_22705 SM01274 CSW12_22705 CSW12_22710 SM00481 DNA polymerase alpha chain like domain CSW12_22740 SM00116 Domain in cystathionine beta-synthase and other proteins. CSW12_22750 SM00849 Metallo-beta-lactamase superfamily CSW12_22800 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CSW12_22800 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CSW12_22940 SM00981 CSW12_22940 CSW12_22985 SM00363 S4 RNA-binding domain CSW12_22985 SM01390 CSW12_22985 CSW12_23000 SM00363 S4 RNA-binding domain CSW12_23025 SM01266 CSW12_23025 CSW12_23040 SM00116 Domain in cystathionine beta-synthase and other proteins. CSW12_23060 SM00448 cheY-homologous receiver domain CSW12_23060 SM00862 Transcriptional regulatory protein, C terminal CSW12_23065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_23065 SM00387 Histidine kinase-like ATPases CSW12_23065 SM00388 His Kinase A (phosphoacceptor) domain CSW12_23070 SM00248 ankyrin repeats CSW12_23100 SM00354 helix_turn _helix lactose operon repressor CSW12_23170 SM00422 helix_turn_helix, mercury resistance CSW12_23185 SM00382 ATPases associated with a variety of cellular activities CSW12_23185 SM00843 CSW12_23185 CSW12_23190 SM00646 CSW12_23190 CSW12_23230 SM00849 Metallo-beta-lactamase superfamily CSW12_23255 SM00642 Alpha-amylase domain CSW12_23270 SM00420 helix_turn_helix, Deoxyribose operon repressor CSW12_23275 SM00363 S4 RNA-binding domain CSW12_23300 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_23330 SM01058 CarD-like/TRCF domain CSW12_23365 SM00852 Probable molybdopterin binding domain CSW12_23380 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_23405 SM00450 Rhodanese Homology Domain CSW12_23485 SM00382 ATPases associated with a variety of cellular activities CSW12_23505 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_23555 SM00014 Acid phosphatase homologues CSW12_23570 SM00852 Probable molybdopterin binding domain CSW12_23670 SM00387 Histidine kinase-like ATPases CSW12_23675 SM00387 Histidine kinase-like ATPases CSW12_23675 SM00388 His Kinase A (phosphoacceptor) domain CSW12_23705 SM00382 ATPases associated with a variety of cellular activities CSW12_23770 SM01234 CSW12_23770 CSW12_23775 SM00947 Carbonic anhydrase CSW12_23850 SM00899 CSW12_23850 CSW12_23860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_23860 SM00387 Histidine kinase-like ATPases CSW12_23860 SM00388 His Kinase A (phosphoacceptor) domain CSW12_23865 SM00448 cheY-homologous receiver domain CSW12_23865 SM00862 Transcriptional regulatory protein, C terminal CSW12_23895 SM00046 Diacylglycerol kinase catalytic domain (presumed) CSW12_23940 SM00382 ATPases associated with a variety of cellular activities CSW12_23945 SM00342 helix_turn_helix, arabinose operon control protein CSW12_23945 SM00871 Bacterial transcription activator, effector binding domain CSW12_23960 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_23965 SM00448 cheY-homologous receiver domain CSW12_23965 SM00862 Transcriptional regulatory protein, C terminal CSW12_23970 SM00387 Histidine kinase-like ATPases CSW12_23995 SM00382 ATPases associated with a variety of cellular activities CSW12_24015 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_24015 SM00866 CSW12_24015 CSW12_24045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_24045 SM00387 Histidine kinase-like ATPases CSW12_24045 SM00388 His Kinase A (phosphoacceptor) domain CSW12_24050 SM00448 cheY-homologous receiver domain CSW12_24050 SM00862 Transcriptional regulatory protein, C terminal CSW12_24060 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CSW12_24110 SM00357 Cold shock protein domain CSW12_24125 SM00422 helix_turn_helix, mercury resistance CSW12_24160 SM00642 Alpha-amylase domain CSW12_24355 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_24365 SM00344 helix_turn_helix ASNC type CSW12_24395 SM01298 CSW12_24395 CSW12_24400 SM00479 CSW12_24400 CSW12_24495 SM00871 Bacterial transcription activator, effector binding domain CSW12_24570 SM00382 ATPases associated with a variety of cellular activities CSW12_24705 SM00422 helix_turn_helix, mercury resistance CSW12_24720 SM00855 Phosphoglycerate mutase family CSW12_24730 SM00729 Elongator protein 3, MiaB family, Radical SAM CSW12_24780 SM00382 ATPases associated with a variety of cellular activities CSW12_24800 SM00382 ATPases associated with a variety of cellular activities CSW12_24800 SM00930 CSW12_24800 CSW12_24815 SM00493 CSW12_24815 CSW12_24875 SM00849 Metallo-beta-lactamase superfamily CSW12_24920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_24920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_25000 SM00530 Helix-turn-helix XRE-family like proteins CSW12_25020 SM00448 cheY-homologous receiver domain CSW12_25020 SM00862 Transcriptional regulatory protein, C terminal CSW12_25025 SM00387 Histidine kinase-like ATPases CSW12_25025 SM00388 His Kinase A (phosphoacceptor) domain CSW12_25050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_25050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_25055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_25055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_25075 SM00347 helix_turn_helix multiple antibiotic resistance protein CSW12_25225 SM00363 S4 RNA-binding domain CSW12_25235 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain CSW12_25275 SM00382 ATPases associated with a variety of cellular activities CSW12_25310 SM00344 helix_turn_helix ASNC type CSW12_25315 SM00947 Carbonic anhydrase CSW12_25320 SM01116 CSW12_25320 CSW12_25335 SM00382 ATPases associated with a variety of cellular activities CSW12_25355 SM00448 cheY-homologous receiver domain CSW12_25355 SM00862 Transcriptional regulatory protein, C terminal CSW12_25370 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_25370 SM00357 Cold shock protein domain CSW12_25370 SM00955 CSW12_25370 CSW12_25400 SM01192 CSW12_25400 CSW12_25400 SM01193 CSW12_25400 CSW12_25420 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CSW12_25450 SM00382 ATPases associated with a variety of cellular activities CSW12_25455 SM00387 Histidine kinase-like ATPases CSW12_25460 SM00421 helix_turn_helix, Lux Regulon CSW12_25460 SM00448 cheY-homologous receiver domain CSW12_25550 SM00028 Tetratricopeptide repeats CSW12_25585 SM00487 DEAD-like helicases superfamily CSW12_25585 SM00490 helicase superfamily c-terminal domain CSW12_25600 SM00422 helix_turn_helix, mercury resistance CSW12_25620 SM00530 Helix-turn-helix XRE-family like proteins CSW12_25635 SM00422 helix_turn_helix, mercury resistance CSW12_25655 SM00382 ATPases associated with a variety of cellular activities CSW12_25665 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSW12_25665 SM00245 tail specific protease CSW12_25675 SM00382 ATPases associated with a variety of cellular activities CSW12_25695 SM00957 SecA DEAD-like domain CSW12_25695 SM00958 SecA preprotein cross-linking domain CSW12_25705 SM00382 ATPases associated with a variety of cellular activities CSW12_25740 SM00357 Cold shock protein domain CSW12_25805 SM00382 ATPases associated with a variety of cellular activities CSW12_25810 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. CSW12_25990 SM00287 Bacterial SH3 domain homologues CSW12_26025 SM00287 Bacterial SH3 domain homologues CSW12_26055 SM00487 DEAD-like helicases superfamily CSW12_26055 SM00490 helicase superfamily c-terminal domain CSW12_26100 SM00382 ATPases associated with a variety of cellular activities CSW12_26110 SM00530 Helix-turn-helix XRE-family like proteins CSW12_26135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_26135 SM00387 Histidine kinase-like ATPases CSW12_26135 SM00388 His Kinase A (phosphoacceptor) domain CSW12_26140 SM00448 cheY-homologous receiver domain CSW12_26140 SM00862 Transcriptional regulatory protein, C terminal CSW12_26260 SM00382 ATPases associated with a variety of cellular activities CSW12_26265 SM00850 LytTr DNA-binding domain CSW12_26345 SM00052 Putative diguanylate phosphodiesterase CSW12_26345 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CSW12_26345 SM00091 PAS domain CSW12_26345 SM00267 diguanylate cyclase CSW12_26365 SM00382 ATPases associated with a variety of cellular activities CSW12_26445 SM00226 Low molecular weight phosphatase family CSW12_26465 SM00903 Flavin reductase like domain CSW12_26500 SM00937 CSW12_26500 CSW12_26520 SM00357 Cold shock protein domain CSW12_26520 SM00382 ATPases associated with a variety of cellular activities CSW12_26520 SM00959 Rho termination factor, N-terminal domain CSW12_26540 SM00448 cheY-homologous receiver domain CSW12_26595 SM00155 Phospholipase D. Active site motifs. CSW12_26605 SM00052 Putative diguanylate phosphodiesterase CSW12_26605 SM00267 diguanylate cyclase CSW12_26615 SM00530 Helix-turn-helix XRE-family like proteins CSW12_26625 SM00421 helix_turn_helix, Lux Regulon CSW12_26625 SM00448 cheY-homologous receiver domain CSW12_26640 SM00382 ATPases associated with a variety of cellular activities CSW12_26675 SM00836 DALR anticodon binding domain CSW12_26675 SM01016 Arginyl tRNA synthetase N terminal dom CSW12_26720 SM00422 helix_turn_helix, mercury resistance CSW12_26750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSW12_26760 SM00382 ATPases associated with a variety of cellular activities CSW12_26800 SM00936 Penicillin-binding protein 5, C-terminal domain CSW12_26850 SM00986 Uracil DNA glycosylase superfamily CSW12_26850 SM00987 UreE urease accessory protein, C-terminal domain CSW12_26860 SM00382 ATPases associated with a variety of cellular activities CSW12_26870 SM00354 helix_turn _helix lactose operon repressor CSW12_26905 SM00100 Cyclic nucleotide-monophosphate binding domain CSW12_26915 SM00421 helix_turn_helix, Lux Regulon CSW12_26915 SM00448 cheY-homologous receiver domain CSW12_26920 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CSW12_26930 SM00267 diguanylate cyclase CSW12_26945 SM00448 cheY-homologous receiver domain CSW12_26945 SM00850 LytTr DNA-binding domain CSW12_26975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CSW12_27005 SM00382 ATPases associated with a variety of cellular activities CSW12_27055 SM00448 cheY-homologous receiver domain CSW12_27055 SM00850 LytTr DNA-binding domain CSW12_27060 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CSW12_27060 SM00387 Histidine kinase-like ATPases CSW12_27140 SM00382 ATPases associated with a variety of cellular activities CSW12_27145 SM00220 Serine/Threonine protein kinases, catalytic domain CSW12_27145 SM01260 CSW12_27145 CSW12_27190 SM00487 DEAD-like helicases superfamily CSW12_27190 SM00490 helicase superfamily c-terminal domain CSW12_27195 SM01240 CSW12_27195 CSW12_27210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CSW12_27210 SM00387 Histidine kinase-like ATPases CSW12_27210 SM00388 His Kinase A (phosphoacceptor) domain CSW12_27225 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSW12_27230 SM00849 Metallo-beta-lactamase superfamily CSW12_27245 SM00091 PAS domain CSW12_27245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_27245 SM00387 Histidine kinase-like ATPases CSW12_27245 SM00388 His Kinase A (phosphoacceptor) domain CSW12_27250 SM00448 cheY-homologous receiver domain CSW12_27250 SM00862 Transcriptional regulatory protein, C terminal CSW12_27275 SM00788 Adenylosuccinate synthetase CSW12_27290 SM00267 diguanylate cyclase CSW12_27335 SM00470 ParB-like nuclease domain CSW12_27345 SM00470 ParB-like nuclease domain CSW12_27355 SM01228 CSW12_27355 CSW12_27365 SM00393 Putative single-stranded nucleic acids-binding domain CSW12_27365 SM01245 CSW12_27365 CSW12_27385 SM00382 ATPases associated with a variety of cellular activities CSW12_27385 SM00760 Bacterial dnaA protein helix-turn-helix domain CSW12_27390 SM00480 DNA polymerase III beta subunit CSW12_27405 SM00387 Histidine kinase-like ATPases CSW12_27405 SM00433 TopoisomeraseII CSW12_27410 SM00434 DNA Topoisomerase IV CSW12_27445 SM00116 Domain in cystathionine beta-synthase and other proteins. CSW12_27445 SM01240 CSW12_27445 CSW12_27450 SM00936 Penicillin-binding protein 5, C-terminal domain CSW12_27510 SM00382 ATPases associated with a variety of cellular activities CSW12_27520 SM00493 CSW12_27520 CSW12_27595 SM00465 GIY-YIG type nucleases (URI domain) CSW12_27605 SM00966 SpoVT / AbrB like domain CSW12_27620 SM00493 CSW12_27620 CSW12_27625 SM00650 Ribosomal RNA adenine dimethylases CSW12_27670 SM01400 CSW12_27670 CSW12_27685 SM00487 DEAD-like helicases superfamily CSW12_27685 SM00490 helicase superfamily c-terminal domain CSW12_27685 SM00982 CSW12_27685 CSW12_27685 SM01058 CarD-like/TRCF domain CSW12_27690 SM00966 SpoVT / AbrB like domain CSW12_27705 SM00363 S4 RNA-binding domain CSW12_27725 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_27740 SM00331 Sigma factor PP2C-like phosphatases CSW12_27740 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CSW12_27745 SM00977 TilS substrate C-terminal domain CSW12_27755 SM00382 ATPases associated with a variety of cellular activities CSW12_27795 SM00905 Dihydroneopterin aldolase CSW12_27805 SM00530 Helix-turn-helix XRE-family like proteins CSW12_27910 SM00382 ATPases associated with a variety of cellular activities CSW12_27910 SM01086 C-terminal, D2-small domain, of ClpB protein CSW12_27915 SM00382 ATPases associated with a variety of cellular activities CSW12_27925 SM00670 Large family of predicted nucleotide-binding domains CSW12_27950 SM00840 CSW12_27950 CSW12_27955 SM00535 Ribonuclease III family CSW12_27960 SM00967 RNA 2'-O ribose methyltransferase substrate binding CSW12_27970 SM00421 helix_turn_helix, Lux Regulon CSW12_27985 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CSW12_27990 SM00649 Ribosomal protein L11/L12 CSW12_28020 SM00663 RNA polymerase I subunit A N-terminus CSW12_28040 SM00838 Elongation factor G C-terminus CSW12_28040 SM00889 Elongation factor G, domain IV CSW12_28055 SM01403 CSW12_28055 CSW12_28075 SM01382 CSW12_28075 CSW12_28075 SM01383 CSW12_28075 CSW12_28090 SM00322 K homology RNA-binding domain CSW12_28110 SM01374 CSW12_28110 CSW12_28115 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CSW12_28175 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_28195 SM00662 RNA polymerases D CSW12_28205 SM00382 ATPases associated with a variety of cellular activities CSW12_28210 SM00382 ATPases associated with a variety of cellular activities CSW12_28240 SM00646 CSW12_28240 CSW12_28255 SM01251 CSW12_28255 CSW12_28400 SM00382 ATPases associated with a variety of cellular activities CSW12_28400 SM00930 CSW12_28400 CSW12_28410 SM00829 Enoylreductase CSW12_28465 SM00382 ATPases associated with a variety of cellular activities CSW12_28470 SM00382 ATPases associated with a variety of cellular activities CSW12_28565 SM00563 Phosphate acyltransferases CSW12_28580 SM00354 helix_turn _helix lactose operon repressor CSW12_28640 SM00382 ATPases associated with a variety of cellular activities CSW12_28670 SM00382 ATPases associated with a variety of cellular activities CSW12_28675 SM00382 ATPases associated with a variety of cellular activities CSW12_28745 SM00487 DEAD-like helicases superfamily CSW12_28745 SM00490 helicase superfamily c-terminal domain CSW12_28770 SM01005 Alanine racemase, C-terminal domain CSW12_28785 SM00316 Ribosomal protein S1-like RNA-binding domain CSW12_28785 SM00732 Likely ribonuclease with RNase H fold. CSW12_28795 SM00731 SprT homologues. CSW12_28905 SM00382 ATPases associated with a variety of cellular activities CSW12_28910 SM00881 CoA binding domain CSW12_28925 SM00883 Chaperonin 10 Kd subunit CSW12_28945 SM00448 cheY-homologous receiver domain CSW12_28945 SM00862 Transcriptional regulatory protein, C terminal CSW12_28950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSW12_28950 SM00387 Histidine kinase-like ATPases CSW12_28950 SM00388 His Kinase A (phosphoacceptor) domain CSW12_29000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSW12_29145 SM00857 Resolvase, N terminal domain CSW12_29155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_29355 SM00530 Helix-turn-helix XRE-family like proteins CSW12_29360 SM00530 Helix-turn-helix XRE-family like proteins CSW12_29495 SM00450 Rhodanese Homology Domain CSW12_29495 SM00849 Metallo-beta-lactamase superfamily CSW12_29530 SM00382 ATPases associated with a variety of cellular activities CSW12_29620 SM00857 Resolvase, N terminal domain CSW12_29675 SM00857 Resolvase, N terminal domain CSW12_29685 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_29810 SM00530 Helix-turn-helix XRE-family like proteins CSW12_29815 SM00530 Helix-turn-helix XRE-family like proteins CSW12_29995 SM00947 Carbonic anhydrase CSW12_30055 SM00645 Papain family cysteine protease CSW12_30110 SM00450 Rhodanese Homology Domain CSW12_30110 SM00849 Metallo-beta-lactamase superfamily CSW12_30130 SM00857 Resolvase, N terminal domain CSW12_30190 SM00966 SpoVT / AbrB like domain CSW12_30200 SM00411 bacterial (prokaryotic) histone like domain CSW12_30205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_30235 SM00857 Resolvase, N terminal domain CSW12_30330 SM00487 DEAD-like helicases superfamily CSW12_30355 SM00758 CSW12_30355 CSW12_30375 SM00857 Resolvase, N terminal domain CSW12_30390 SM00857 Resolvase, N terminal domain CSW12_30420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_30425 SM00411 bacterial (prokaryotic) histone like domain CSW12_30435 SM00966 SpoVT / AbrB like domain CSW12_30475 SM00507 HNH nucleases CSW12_30570 SM00530 Helix-turn-helix XRE-family like proteins CSW12_30575 SM00530 Helix-turn-helix XRE-family like proteins CSW12_30635 SM00507 HNH nucleases CSW12_30645 SM00857 Resolvase, N terminal domain CSW12_30680 SM00857 Resolvase, N terminal domain CSW12_30690 SM00098 Alkaline phosphatase homologues CSW12_30765 SM00947 Carbonic anhydrase CSW12_30850 SM00530 Helix-turn-helix XRE-family like proteins CSW12_30890 SM00387 Histidine kinase-like ATPases CSW12_30895 SM00448 cheY-homologous receiver domain CSW12_30900 SM00530 Helix-turn-helix XRE-family like proteins CSW12_30945 SM00530 Helix-turn-helix XRE-family like proteins CSW12_30950 SM00530 Helix-turn-helix XRE-family like proteins CSW12_31110 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CSW12_31110 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CSW12_31110 SM00493 CSW12_31110 CSW12_31140 SM00966 SpoVT / AbrB like domain CSW12_31145 SM00411 bacterial (prokaryotic) histone like domain CSW12_31160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSW12_31235 SM00507 HNH nucleases CSW12_31260 SM00857 Resolvase, N terminal domain