BCQ_0001 SM00382 ATPases associated with a variety of cellular activities BCQ_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BCQ_0002 SM00480 DNA polymerase III beta subunit BCQ_0005 SM00387 Histidine kinase-like ATPases BCQ_0005 SM00433 TopoisomeraseII BCQ_0006 SM00434 DNA Topoisomerase IV BCQ_0014 SM00116 Domain in cystathionine beta-synthase and other proteins. BCQ_0014 SM01240 BCQ_0014 BCQ_0015 SM00936 Penicillin-binding protein 5, C-terminal domain BCQ_0025 SM00382 ATPases associated with a variety of cellular activities BCQ_0028 SM00493 BCQ_0028 BCQ_0044 SM00966 SpoVT / AbrB like domain BCQ_0047 SM00493 BCQ_0047 BCQ_0048 SM00650 Ribosomal RNA adenine dimethylases BCQ_0057 SM01400 BCQ_0057 BCQ_0060 SM00487 DEAD-like helicases superfamily BCQ_0060 SM00490 helicase superfamily c-terminal domain BCQ_0060 SM00982 BCQ_0060 BCQ_0060 SM01058 CarD-like/TRCF domain BCQ_0061 SM00966 SpoVT / AbrB like domain BCQ_0064 SM00363 S4 RNA-binding domain BCQ_0068 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_0071 SM00331 Sigma factor PP2C-like phosphatases BCQ_0071 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BCQ_0072 SM00977 TilS substrate C-terminal domain BCQ_0074 SM00382 ATPases associated with a variety of cellular activities BCQ_0082 SM00905 Dihydroneopterin aldolase BCQ_0084 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0095 SM00382 ATPases associated with a variety of cellular activities BCQ_0095 SM01086 C-terminal, D2-small domain, of ClpB protein BCQ_0096 SM00382 ATPases associated with a variety of cellular activities BCQ_0098 SM00670 Large family of predicted nucleotide-binding domains BCQ_0103 SM00840 BCQ_0103 BCQ_0104 SM00535 Ribonuclease III family BCQ_0105 SM00967 RNA 2'-O ribose methyltransferase substrate binding BCQ_0107 SM00421 helix_turn_helix, Lux Regulon BCQ_0109 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BCQ_0110 SM00649 Ribosomal protein L11/L12 BCQ_0116 SM00663 RNA polymerase I subunit A N-terminus BCQ_0120 SM00838 Elongation factor G C-terminus BCQ_0120 SM00889 Elongation factor G, domain IV BCQ_0122 SM01403 BCQ_0122 BCQ_0126 SM01382 BCQ_0126 BCQ_0126 SM01383 BCQ_0126 BCQ_0129 SM00322 K homology RNA-binding domain BCQ_0133 SM01374 BCQ_0133 BCQ_0134 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BCQ_0146 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_0150 SM00662 RNA polymerases D BCQ_0152 SM00382 ATPases associated with a variety of cellular activities BCQ_0153 SM00382 ATPases associated with a variety of cellular activities BCQ_0159 SM00646 BCQ_0159 BCQ_0162 SM01251 BCQ_0162 BCQ_0185 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_0185 SM00895 BCQ_0185 BCQ_0188 SM01350 BCQ_0188 BCQ_0197 SM00382 ATPases associated with a variety of cellular activities BCQ_0197 SM00930 BCQ_0197 BCQ_0199 SM00829 Enoylreductase BCQ_0210 SM00382 ATPases associated with a variety of cellular activities BCQ_0211 SM00382 ATPases associated with a variety of cellular activities BCQ_0214 SM00342 helix_turn_helix, arabinose operon control protein BCQ_0233 SM00563 Phosphate acyltransferases BCQ_0235 SM00354 helix_turn _helix lactose operon repressor BCQ_0244 SM00382 ATPases associated with a variety of cellular activities BCQ_0250 SM00382 ATPases associated with a variety of cellular activities BCQ_0251 SM00382 ATPases associated with a variety of cellular activities BCQ_0263 SM00487 DEAD-like helicases superfamily BCQ_0263 SM00490 helicase superfamily c-terminal domain BCQ_0268 SM01005 Alanine racemase, C-terminal domain BCQ_0271 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_0271 SM00732 Likely ribonuclease with RNase H fold. BCQ_0272 SM00731 SprT homologues. BCQ_0294 SM00382 ATPases associated with a variety of cellular activities BCQ_0295 SM00881 CoA binding domain BCQ_0297 SM00883 Chaperonin 10 Kd subunit BCQ_0301 SM00448 cheY-homologous receiver domain BCQ_0301 SM00862 Transcriptional regulatory protein, C terminal BCQ_0302 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_0302 SM00387 Histidine kinase-like ATPases BCQ_0302 SM00388 His Kinase A (phosphoacceptor) domain BCQ_0324 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_0340 SM01001 AIR carboxylase BCQ_0342 SM00998 Adenylosuccinate lyase C-terminus BCQ_0345 SM01211 BCQ_0345 BCQ_0350 SM00798 AICARFT/IMPCHase bienzyme BCQ_0350 SM00851 MGS-like domain BCQ_0351 SM01209 BCQ_0351 BCQ_0351 SM01210 BCQ_0351 BCQ_0353 SM00244 prohibitin homologues BCQ_0357 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BCQ_0357 SM00292 breast cancer carboxy-terminal domain BCQ_0357 SM00532 Ligase N family BCQ_0363 SM00382 ATPases associated with a variety of cellular activities BCQ_0363 SM00930 BCQ_0363 BCQ_0368 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_0372 SM00845 GatB domain BCQ_0377 SM00382 ATPases associated with a variety of cellular activities BCQ_0385 SM00052 Putative diguanylate phosphodiesterase BCQ_0385 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BCQ_0385 SM00091 PAS domain BCQ_0385 SM00267 diguanylate cyclase BCQ_0398 SM00382 ATPases associated with a variety of cellular activities BCQ_0399 SM00028 Tetratricopeptide repeats BCQ_0399 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0409 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BCQ_0418 SM01007 Class II Aldolase and Adducin N-terminal domain BCQ_0440 SM00448 cheY-homologous receiver domain BCQ_0442 SM00062 Bacterial periplasmic substrate-binding proteins BCQ_0442 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BCQ_0443 SM00382 ATPases associated with a variety of cellular activities BCQ_0444 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_0444 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_0445 SM00642 Alpha-amylase domain BCQ_0449 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BCQ_0449 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BCQ_0449 SM00493 BCQ_0449 BCQ_0452 SM00382 ATPases associated with a variety of cellular activities BCQ_0457 SM00382 ATPases associated with a variety of cellular activities BCQ_0460 SM00493 BCQ_0460 BCQ_0465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_0465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_0471 SM00382 ATPases associated with a variety of cellular activities BCQ_0472 SM00060 Fibronectin type 3 domain BCQ_0472 SM00636 BCQ_0472 BCQ_0472 SM00637 BCQ_0472 BCQ_0479 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0484 SM00946 Prolyl-tRNA synthetase, C-terminal BCQ_0493 SM00831 Cation transporter/ATPase, N-terminus BCQ_0495 SM00226 Low molecular weight phosphatase family BCQ_0514 SM00478 endonuclease III BCQ_0518 SM00910 BCQ_0518 BCQ_0520 SM00382 ATPases associated with a variety of cellular activities BCQ_0524 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0534 SM00984 UDP binding domain BCQ_0550 SM00478 endonuclease III BCQ_0550 SM00525 BCQ_0550 BCQ_0556 SM00382 ATPases associated with a variety of cellular activities BCQ_0560 SM00382 ATPases associated with a variety of cellular activities BCQ_0589 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0596 SM00857 Resolvase, N terminal domain BCQ_0611 SM00567 E-Z type HEAT repeats BCQ_0614 SM00052 Putative diguanylate phosphodiesterase BCQ_0614 SM00091 PAS domain BCQ_0614 SM00267 diguanylate cyclase BCQ_0616 SM00763 PrkA AAA domain BCQ_0618 SM00365 Leucine-rich repeat, SDS22-like subfamily BCQ_0618 SM00369 Leucine-rich repeats, typical (most populated) subfamily BCQ_0618 SM00725 NEAr Transporter domain BCQ_0620 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BCQ_0622 SM00244 prohibitin homologues BCQ_0623 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_0623 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_0624 SM00091 PAS domain BCQ_0624 SM00387 Histidine kinase-like ATPases BCQ_0625 SM00448 cheY-homologous receiver domain BCQ_0629 SM00248 ankyrin repeats BCQ_0632 SM00382 ATPases associated with a variety of cellular activities BCQ_0637 SM00448 cheY-homologous receiver domain BCQ_0637 SM00862 Transcriptional regulatory protein, C terminal BCQ_0638 SM00387 Histidine kinase-like ATPases BCQ_0638 SM00388 His Kinase A (phosphoacceptor) domain BCQ_0641 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_0641 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_0642 SM00387 Histidine kinase-like ATPases BCQ_0643 SM00448 cheY-homologous receiver domain BCQ_0645 SM00919 Malic enzyme, NAD binding domain BCQ_0645 SM01274 BCQ_0645 BCQ_0648 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_0650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_0650 SM00387 Histidine kinase-like ATPases BCQ_0650 SM00388 His Kinase A (phosphoacceptor) domain BCQ_0651 SM00448 cheY-homologous receiver domain BCQ_0651 SM00862 Transcriptional regulatory protein, C terminal BCQ_0655 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BCQ_0655 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BCQ_0658 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BCQ_0658 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BCQ_0660 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_0663 SM00028 Tetratricopeptide repeats BCQ_0663 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0673 SM01091 Transporter associated domain BCQ_0677 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_0683 SM00382 ATPases associated with a variety of cellular activities BCQ_0689 SM00327 von Willebrand factor (vWF) type A domain BCQ_0690 SM00382 ATPases associated with a variety of cellular activities BCQ_0691 SM00155 Phospholipase D. Active site motifs. BCQ_0694 SM00052 Putative diguanylate phosphodiesterase BCQ_0694 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BCQ_0694 SM00267 diguanylate cyclase BCQ_0696 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_0696 SM00866 BCQ_0696 BCQ_0700 SM00642 Alpha-amylase domain BCQ_0707 SM00382 ATPases associated with a variety of cellular activities BCQ_0708 SM00062 Bacterial periplasmic substrate-binding proteins BCQ_0708 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BCQ_0718 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_0718 SM00387 Histidine kinase-like ATPases BCQ_0718 SM00388 His Kinase A (phosphoacceptor) domain BCQ_0719 SM00448 cheY-homologous receiver domain BCQ_0719 SM00862 Transcriptional regulatory protein, C terminal BCQ_0727 SM00382 ATPases associated with a variety of cellular activities BCQ_0728 SM00382 ATPases associated with a variety of cellular activities BCQ_0730 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_0732 SM00354 helix_turn _helix lactose operon repressor BCQ_0735 SM00382 ATPases associated with a variety of cellular activities BCQ_0741 SM00829 Enoylreductase BCQ_0743 SM00770 Zinc dependent phospholipase C (alpha toxin) BCQ_0751 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_0753 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0764 SM00530 Helix-turn-helix XRE-family like proteins BCQ_0784 SM00899 BCQ_0784 BCQ_0813 SM00116 Domain in cystathionine beta-synthase and other proteins. BCQ_0815 SM00287 Bacterial SH3 domain homologues BCQ_0817 SM00382 ATPases associated with a variety of cellular activities BCQ_0834 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_0839 SM00382 ATPases associated with a variety of cellular activities BCQ_0842 SM00382 ATPases associated with a variety of cellular activities BCQ_0861 SM00450 Rhodanese Homology Domain BCQ_0863 SM00450 Rhodanese Homology Domain BCQ_0864 SM00450 Rhodanese Homology Domain BCQ_0864 SM00849 Metallo-beta-lactamase superfamily BCQ_0867 SM00450 Rhodanese Homology Domain BCQ_0868 SM00450 Rhodanese Homology Domain BCQ_0873 SM00829 Enoylreductase BCQ_0884 SM00287 Bacterial SH3 domain homologues BCQ_0886 SM00382 ATPases associated with a variety of cellular activities BCQ_0897 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BCQ_0916 SM00344 helix_turn_helix ASNC type BCQ_0929 SM01060 BCQ_0929 BCQ_0935 SM00382 ATPases associated with a variety of cellular activities BCQ_0936 SM00382 ATPases associated with a variety of cellular activities BCQ_0937 SM00062 Bacterial periplasmic substrate-binding proteins BCQ_0937 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BCQ_0939 SM00382 ATPases associated with a variety of cellular activities BCQ_0947 SM00387 Histidine kinase-like ATPases BCQ_0948 SM00421 helix_turn_helix, Lux Regulon BCQ_0948 SM00448 cheY-homologous receiver domain BCQ_0961 SM00644 BCQ_0961 BCQ_0962 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_0970 SM00957 SecA DEAD-like domain BCQ_0970 SM00958 SecA preprotein cross-linking domain BCQ_0985 SM00646 BCQ_0985 BCQ_0997 SM00382 ATPases associated with a variety of cellular activities BCQ_0999 SM00091 PAS domain BCQ_0999 SM00387 Histidine kinase-like ATPases BCQ_1000 SM00448 cheY-homologous receiver domain BCQ_1014 SM00422 helix_turn_helix, mercury resistance BCQ_1038 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_1044 SM01120 BCQ_1044 BCQ_1050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_1053 SM00460 Transglutaminase/protease-like homologues BCQ_1070 SM00331 Sigma factor PP2C-like phosphatases BCQ_1070 SM00448 cheY-homologous receiver domain BCQ_1071 SM00138 Methyltransferase, chemotaxis proteins BCQ_1072 SM00387 Histidine kinase-like ATPases BCQ_1072 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1072 SM00448 cheY-homologous receiver domain BCQ_1080 SM00829 Enoylreductase BCQ_1089 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_1118 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_1121 SM00382 ATPases associated with a variety of cellular activities BCQ_1152 SM00354 helix_turn _helix lactose operon repressor BCQ_1153 SM00849 Metallo-beta-lactamase superfamily BCQ_1158 SM00725 NEAr Transporter domain BCQ_1175 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_1178 SM00342 helix_turn_helix, arabinose operon control protein BCQ_1178 SM00871 Bacterial transcription activator, effector binding domain BCQ_1180 SM00387 Histidine kinase-like ATPases BCQ_1180 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1181 SM00448 cheY-homologous receiver domain BCQ_1181 SM00862 Transcriptional regulatory protein, C terminal BCQ_1194 SM00357 Cold shock protein domain BCQ_1216 SM01060 BCQ_1216 BCQ_1218 SM00642 Alpha-amylase domain BCQ_1219 SM00530 Helix-turn-helix XRE-family like proteins BCQ_1221 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_1235 SM00382 ATPases associated with a variety of cellular activities BCQ_1235 SM01086 C-terminal, D2-small domain, of ClpB protein BCQ_1241 SM00825 Beta-ketoacyl synthase BCQ_1249 SM00382 ATPases associated with a variety of cellular activities BCQ_1250 SM00382 ATPases associated with a variety of cellular activities BCQ_1258 SM00155 Phospholipase D. Active site motifs. BCQ_1263 SM01118 BCQ_1263 BCQ_1265 SM00954 Region found in RelA / SpoT proteins BCQ_1297 SM00635 Bacterial Ig-like domain 2 BCQ_1324 SM00861 Transketolase, pyrimidine binding domain BCQ_1325 SM00530 Helix-turn-helix XRE-family like proteins BCQ_1355 SM00530 Helix-turn-helix XRE-family like proteins BCQ_1359 SM00382 ATPases associated with a variety of cellular activities BCQ_1363 SM00014 Acid phosphatase homologues BCQ_1373 SM00448 cheY-homologous receiver domain BCQ_1373 SM00862 Transcriptional regulatory protein, C terminal BCQ_1374 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_1374 SM00387 Histidine kinase-like ATPases BCQ_1374 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1375 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_1375 SM00895 BCQ_1375 BCQ_1389 SM00822 BCQ_1389 BCQ_1396 SM00382 ATPases associated with a variety of cellular activities BCQ_1401 SM00420 helix_turn_helix, Deoxyribose operon repressor BCQ_1401 SM01134 BCQ_1401 BCQ_1402 SM00365 Leucine-rich repeat, SDS22-like subfamily BCQ_1402 SM00369 Leucine-rich repeats, typical (most populated) subfamily BCQ_1402 SM00725 NEAr Transporter domain BCQ_1403 SM01007 Class II Aldolase and Adducin N-terminal domain BCQ_1407 SM00387 Histidine kinase-like ATPases BCQ_1407 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1408 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_1412 SM00387 Histidine kinase-like ATPases BCQ_1412 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1429 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_1430 SM00382 ATPases associated with a variety of cellular activities BCQ_1432 SM00382 ATPases associated with a variety of cellular activities BCQ_1436 SM00344 helix_turn_helix ASNC type BCQ_1460 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_1473 SM00917 LeuA allosteric (dimerisation) domain BCQ_1474 SM01329 BCQ_1474 BCQ_1511 SM00387 Histidine kinase-like ATPases BCQ_1512 SM00421 helix_turn_helix, Lux Regulon BCQ_1512 SM00448 cheY-homologous receiver domain BCQ_1528 SM00091 PAS domain BCQ_1528 SM00387 Histidine kinase-like ATPases BCQ_1528 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1532 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_1532 SM00387 Histidine kinase-like ATPases BCQ_1532 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1542 SM00363 S4 RNA-binding domain BCQ_1546 SM00448 cheY-homologous receiver domain BCQ_1546 SM00862 Transcriptional regulatory protein, C terminal BCQ_1547 SM00091 PAS domain BCQ_1547 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_1547 SM00387 Histidine kinase-like ATPases BCQ_1547 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1549 SM00257 Lysin motif BCQ_1554 SM00487 DEAD-like helicases superfamily BCQ_1554 SM00490 helicase superfamily c-terminal domain BCQ_1556 SM00257 Lysin motif BCQ_1560 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BCQ_1563 SM00644 BCQ_1563 BCQ_1565 SM00870 BCQ_1565 BCQ_1568 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_1569 SM01240 BCQ_1569 BCQ_1579 SM00411 bacterial (prokaryotic) histone like domain BCQ_1584 SM00562 BCQ_1584 BCQ_1588 SM00028 Tetratricopeptide repeats BCQ_1589 SM00914 BCQ_1589 BCQ_1599 SM00986 Uracil DNA glycosylase superfamily BCQ_1599 SM00987 UreE urease accessory protein, C-terminal domain BCQ_1603 SM00851 MGS-like domain BCQ_1611 SM00479 BCQ_1611 BCQ_1611 SM00491 BCQ_1611 BCQ_1616 SM00478 endonuclease III BCQ_1616 SM00525 BCQ_1616 BCQ_1618 SM00060 Fibronectin type 3 domain BCQ_1629 SM00981 BCQ_1629 BCQ_1631 SM00491 BCQ_1631 BCQ_1641 SM00450 Rhodanese Homology Domain BCQ_1647 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BCQ_1647 SM00475 5'-3' exonuclease BCQ_1661 SM00357 Cold shock protein domain BCQ_1672 SM00849 Metallo-beta-lactamase superfamily BCQ_1673 SM00422 helix_turn_helix, mercury resistance BCQ_1673 SM00871 Bacterial transcription activator, effector binding domain BCQ_1693 SM00448 cheY-homologous receiver domain BCQ_1694 SM00073 Histidine Phosphotransfer domain BCQ_1694 SM00260 Two component signalling adaptor domain BCQ_1694 SM00387 Histidine kinase-like ATPases BCQ_1694 SM01231 BCQ_1694 BCQ_1698 SM00138 Methyltransferase, chemotaxis proteins BCQ_1713 SM00382 ATPases associated with a variety of cellular activities BCQ_1720 SM00260 Two component signalling adaptor domain BCQ_1720 SM00448 cheY-homologous receiver domain BCQ_1734 SM00382 ATPases associated with a variety of cellular activities BCQ_1734 SM00962 SRP54-type protein, GTPase domain BCQ_1749 SM00530 Helix-turn-helix XRE-family like proteins BCQ_1754 SM00382 ATPases associated with a variety of cellular activities BCQ_1757 SM00849 Metallo-beta-lactamase superfamily BCQ_1757 SM01027 Beta-Casp domain BCQ_1761 SM00835 Cupin BCQ_1764 SM00855 Phosphoglycerate mutase family BCQ_1768 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_1776 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_1776 SM00895 BCQ_1776 BCQ_1791 SM00530 Helix-turn-helix XRE-family like proteins BCQ_1799 SM00421 helix_turn_helix, Lux Regulon BCQ_1799 SM00448 cheY-homologous receiver domain BCQ_1801 SM00382 ATPases associated with a variety of cellular activities BCQ_1804 SM00155 Phospholipase D. Active site motifs. BCQ_1806 SM00421 helix_turn_helix, Lux Regulon BCQ_1806 SM00448 cheY-homologous receiver domain BCQ_1813 SM00919 Malic enzyme, NAD binding domain BCQ_1813 SM01274 BCQ_1813 BCQ_1814 SM00387 Histidine kinase-like ATPases BCQ_1815 SM00448 cheY-homologous receiver domain BCQ_1816 SM00487 DEAD-like helicases superfamily BCQ_1816 SM00490 helicase superfamily c-terminal domain BCQ_1819 SM00530 Helix-turn-helix XRE-family like proteins BCQ_1825 SM00646 BCQ_1825 BCQ_1826 SM00047 Lysozyme subfamily 2 BCQ_1856 SM00854 Bacterial capsule synthesis protein PGA_cap BCQ_1862 SM00850 LytTr DNA-binding domain BCQ_1871 SM00448 cheY-homologous receiver domain BCQ_1871 SM00862 Transcriptional regulatory protein, C terminal BCQ_1872 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_1872 SM00387 Histidine kinase-like ATPases BCQ_1872 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1875 SM00450 Rhodanese Homology Domain BCQ_1887 SM01133 BCQ_1887 BCQ_1889 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BCQ_1893 SM01011 Aminopeptidase P, N-terminal domain BCQ_1896 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BCQ_1896 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BCQ_1896 SM00493 BCQ_1896 BCQ_1916 SM00833 Cobalamin synthesis protein cobW C-terminal domain BCQ_1918 SM00382 ATPases associated with a variety of cellular activities BCQ_1919 SM00382 ATPases associated with a variety of cellular activities BCQ_1926 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_1930 SM00382 ATPases associated with a variety of cellular activities BCQ_1931 SM00382 ATPases associated with a variety of cellular activities BCQ_1944 SM00287 Bacterial SH3 domain homologues BCQ_1946 SM00382 ATPases associated with a variety of cellular activities BCQ_1947 SM00448 cheY-homologous receiver domain BCQ_1947 SM00862 Transcriptional regulatory protein, C terminal BCQ_1948 SM00387 Histidine kinase-like ATPases BCQ_1948 SM00388 His Kinase A (phosphoacceptor) domain BCQ_1971 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_1976 SM00460 Transglutaminase/protease-like homologues BCQ_1981 SM00966 SpoVT / AbrB like domain BCQ_1983 SM00382 ATPases associated with a variety of cellular activities BCQ_1986 SM00342 helix_turn_helix, arabinose operon control protein BCQ_1995 SM01133 BCQ_1995 BCQ_1998 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_2005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_2005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_2018 SM00833 Cobalamin synthesis protein cobW C-terminal domain BCQ_2039 SM00155 Phospholipase D. Active site motifs. BCQ_2044 SM01091 Transporter associated domain BCQ_2057 SM00244 prohibitin homologues BCQ_2058 SM00855 Phosphoglycerate mutase family BCQ_2061 SM01005 Alanine racemase, C-terminal domain BCQ_2067 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_2087 SM00487 DEAD-like helicases superfamily BCQ_2087 SM00490 helicase superfamily c-terminal domain BCQ_2090 SM00829 Enoylreductase BCQ_2094 SM00849 Metallo-beta-lactamase superfamily BCQ_2097 SM00460 Transglutaminase/protease-like homologues BCQ_2102 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BCQ_2106 SM00100 Cyclic nucleotide-monophosphate binding domain BCQ_2106 SM00419 helix_turn_helix, cAMP Regulatory protein BCQ_2109 SM00852 Probable molybdopterin binding domain BCQ_2124 SM00894 Excalibur calcium-binding domain BCQ_2133 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_2135 SM00507 HNH nucleases BCQ_2136 SM00382 ATPases associated with a variety of cellular activities BCQ_2142 SM00567 E-Z type HEAT repeats BCQ_2146 SM00836 DALR anticodon binding domain BCQ_2146 SM01016 Arginyl tRNA synthetase N terminal dom BCQ_2148 SM00028 Tetratricopeptide repeats BCQ_2166 SM00382 ATPases associated with a variety of cellular activities BCQ_2178 SM00563 Phosphate acyltransferases BCQ_2199 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BCQ_2200 SM00421 helix_turn_helix, Lux Regulon BCQ_2200 SM00448 cheY-homologous receiver domain BCQ_2203 SM00829 Enoylreductase BCQ_2216 SM00382 ATPases associated with a variety of cellular activities BCQ_2224 SM01091 Transporter associated domain BCQ_2225 SM00387 Histidine kinase-like ATPases BCQ_2229 SM00882 Coenzyme A transferase BCQ_2230 SM00882 Coenzyme A transferase BCQ_2233 SM00382 ATPases associated with a variety of cellular activities BCQ_2241 SM00219 Tyrosine kinase, catalytic domain BCQ_2243 SM00014 Acid phosphatase homologues BCQ_2253 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BCQ_2289 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_2298 SM00823 Phosphopantetheine attachment site BCQ_2298 SM00824 Thioesterase BCQ_2299 SM00923 MbtH-like protein BCQ_2303 SM00411 bacterial (prokaryotic) histone like domain BCQ_2313 SM00363 S4 RNA-binding domain BCQ_2314 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BCQ_2315 SM00382 ATPases associated with a variety of cellular activities BCQ_2318 SM01321 BCQ_2318 BCQ_2324 SM00849 Metallo-beta-lactamase superfamily BCQ_2329 SM00849 Metallo-beta-lactamase superfamily BCQ_2337 SM00530 Helix-turn-helix XRE-family like proteins BCQ_2346 SM00357 Cold shock protein domain BCQ_2352 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_2355 SM00859 Semialdehyde dehydrogenase, NAD binding domain BCQ_2362 SM00382 ATPases associated with a variety of cellular activities BCQ_2363 SM00382 ATPases associated with a variety of cellular activities BCQ_2365 SM00530 Helix-turn-helix XRE-family like proteins BCQ_2369 SM00835 Cupin BCQ_2385 SM01207 BCQ_2385 BCQ_2390 SM00849 Metallo-beta-lactamase superfamily BCQ_2392 SM00487 DEAD-like helicases superfamily BCQ_2392 SM00490 helicase superfamily c-terminal domain BCQ_2400 SM00382 ATPases associated with a variety of cellular activities BCQ_2405 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_2406 SM00855 Phosphoglycerate mutase family BCQ_2420 SM00382 ATPases associated with a variety of cellular activities BCQ_2426 SM00878 Biotin carboxylase C-terminal domain BCQ_2436 SM00387 Histidine kinase-like ATPases BCQ_2436 SM00388 His Kinase A (phosphoacceptor) domain BCQ_2437 SM00448 cheY-homologous receiver domain BCQ_2437 SM00862 Transcriptional regulatory protein, C terminal BCQ_2438 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_2450 SM00382 ATPases associated with a variety of cellular activities BCQ_2452 SM00422 helix_turn_helix, mercury resistance BCQ_2452 SM00871 Bacterial transcription activator, effector binding domain BCQ_2463 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_2473 SM00448 cheY-homologous receiver domain BCQ_2473 SM00862 Transcriptional regulatory protein, C terminal BCQ_2474 SM00387 Histidine kinase-like ATPases BCQ_2476 SM00382 ATPases associated with a variety of cellular activities BCQ_2477 SM00382 ATPases associated with a variety of cellular activities BCQ_2483 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_2484 SM01209 BCQ_2484 BCQ_2501 SM00091 PAS domain BCQ_2501 SM00387 Histidine kinase-like ATPases BCQ_2501 SM00388 His Kinase A (phosphoacceptor) domain BCQ_2506 SM00382 ATPases associated with a variety of cellular activities BCQ_2509 SM00387 Histidine kinase-like ATPases BCQ_2509 SM00388 His Kinase A (phosphoacceptor) domain BCQ_2512 SM00829 Enoylreductase BCQ_2513 SM00014 Acid phosphatase homologues BCQ_2514 SM00740 BCQ_2514 BCQ_2524 SM00422 helix_turn_helix, mercury resistance BCQ_2532 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_2544 SM00480 DNA polymerase III beta subunit BCQ_2563 SM00465 GIY-YIG type nucleases (URI domain) BCQ_2577 SM00014 Acid phosphatase homologues BCQ_2578 SM00642 Alpha-amylase domain BCQ_2582 SM00871 Bacterial transcription activator, effector binding domain BCQ_2607 SM00382 ATPases associated with a variety of cellular activities BCQ_2611 SM00420 helix_turn_helix, Deoxyribose operon repressor BCQ_2611 SM01134 BCQ_2611 BCQ_2616 SM00861 Transketolase, pyrimidine binding domain BCQ_2629 SM00116 Domain in cystathionine beta-synthase and other proteins. BCQ_2629 SM00382 ATPases associated with a variety of cellular activities BCQ_2643 SM00849 Metallo-beta-lactamase superfamily BCQ_2649 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_2655 SM00341 Helicase and RNase D C-terminal BCQ_2655 SM00487 DEAD-like helicases superfamily BCQ_2655 SM00490 helicase superfamily c-terminal domain BCQ_2655 SM00956 BCQ_2655 BCQ_2660 SM00646 BCQ_2660 BCQ_2664 SM01131 BCQ_2664 BCQ_2667 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_2671 SM01130 BCQ_2671 BCQ_2675 SM00091 PAS domain BCQ_2675 SM00382 ATPases associated with a variety of cellular activities BCQ_2687 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BCQ_2696 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BCQ_2697 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_2697 SM00387 Histidine kinase-like ATPases BCQ_2697 SM00388 His Kinase A (phosphoacceptor) domain BCQ_2698 SM00448 cheY-homologous receiver domain BCQ_2698 SM00862 Transcriptional regulatory protein, C terminal BCQ_2752 SM00062 Bacterial periplasmic substrate-binding proteins BCQ_2753 SM00382 ATPases associated with a variety of cellular activities BCQ_2759 SM00028 Tetratricopeptide repeats BCQ_2778 SM00382 ATPases associated with a variety of cellular activities BCQ_2787 SM00830 Chorismate mutase type II BCQ_2792 SM00287 Bacterial SH3 domain homologues BCQ_2799 SM00382 ATPases associated with a variety of cellular activities BCQ_2803 SM01133 BCQ_2803 BCQ_2807 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_2810 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BCQ_2813 SM00346 helix_turn_helix isocitrate lyase regulation BCQ_2818 SM00098 Alkaline phosphatase homologues BCQ_2820 SM00530 Helix-turn-helix XRE-family like proteins BCQ_2825 SM00850 LytTr DNA-binding domain BCQ_2836 SM01060 BCQ_2836 BCQ_2838 SM00382 ATPases associated with a variety of cellular activities BCQ_2841 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_2850 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_2851 SM00889 Elongation factor G, domain IV BCQ_2856 SM00382 ATPases associated with a variety of cellular activities BCQ_2857 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_2859 SM00382 ATPases associated with a variety of cellular activities BCQ_2863 SM00382 ATPases associated with a variety of cellular activities BCQ_2868 SM00342 helix_turn_helix, arabinose operon control protein BCQ_2868 SM00871 Bacterial transcription activator, effector binding domain BCQ_2873 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_2876 SM00387 Histidine kinase-like ATPases BCQ_2876 SM00388 His Kinase A (phosphoacceptor) domain BCQ_2877 SM00448 cheY-homologous receiver domain BCQ_2877 SM00862 Transcriptional regulatory protein, C terminal BCQ_2889 SM00422 helix_turn_helix, mercury resistance BCQ_2891 SM00382 ATPases associated with a variety of cellular activities BCQ_2905 SM00797 Allophanate hydrolase subunit 2 BCQ_2906 SM00796 Allophanate hydrolase subunit 1 BCQ_2907 SM00346 helix_turn_helix isocitrate lyase regulation BCQ_2911 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_2928 SM00849 Metallo-beta-lactamase superfamily BCQ_2944 SM00870 BCQ_2944 BCQ_2945 SM00530 Helix-turn-helix XRE-family like proteins BCQ_2947 SM00465 GIY-YIG type nucleases (URI domain) BCQ_2955 SM00387 Histidine kinase-like ATPases BCQ_2965 SM01060 BCQ_2965 BCQ_2988 SM00382 ATPases associated with a variety of cellular activities BCQ_2991 SM00421 helix_turn_helix, Lux Regulon BCQ_2991 SM00448 cheY-homologous receiver domain BCQ_2995 SM00776 BCQ_2995 BCQ_2996 SM01007 Class II Aldolase and Adducin N-terminal domain BCQ_2999 SM01007 Class II Aldolase and Adducin N-terminal domain BCQ_3002 SM00382 ATPases associated with a variety of cellular activities BCQ_3004 SM00354 helix_turn _helix lactose operon repressor BCQ_3007 SM00226 Low molecular weight phosphatase family BCQ_3010 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_3015 SM00382 ATPases associated with a variety of cellular activities BCQ_3025 SM00344 helix_turn_helix ASNC type BCQ_3033 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_3048 SM00422 helix_turn_helix, mercury resistance BCQ_3052 SM00382 ATPases associated with a variety of cellular activities BCQ_3054 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_3057 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_3057 SM00387 Histidine kinase-like ATPases BCQ_3057 SM00388 His Kinase A (phosphoacceptor) domain BCQ_3058 SM00448 cheY-homologous receiver domain BCQ_3058 SM00862 Transcriptional regulatory protein, C terminal BCQ_3060 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_3078 SM00342 helix_turn_helix, arabinose operon control protein BCQ_3083 SM00644 BCQ_3083 BCQ_3095 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_3100 SM00382 ATPases associated with a variety of cellular activities BCQ_3102 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_3114 SM00382 ATPases associated with a variety of cellular activities BCQ_3123 SM00422 helix_turn_helix, mercury resistance BCQ_3126 SM00530 Helix-turn-helix XRE-family like proteins BCQ_3141 SM00382 ATPases associated with a variety of cellular activities BCQ_3144 SM00530 Helix-turn-helix XRE-family like proteins BCQ_3153 SM01266 BCQ_3153 BCQ_3168 SM01091 Transporter associated domain BCQ_3169 SM00422 helix_turn_helix, mercury resistance BCQ_3186 SM01350 BCQ_3186 BCQ_3187 SM00861 Transketolase, pyrimidine binding domain BCQ_3192 SM00829 Enoylreductase BCQ_3202 SM00914 BCQ_3202 BCQ_3208 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_3208 SM00866 BCQ_3208 BCQ_3216 SM00849 Metallo-beta-lactamase superfamily BCQ_3229 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_3230 SM00636 BCQ_3230 BCQ_3238 SM00871 Bacterial transcription activator, effector binding domain BCQ_3241 SM00382 ATPases associated with a variety of cellular activities BCQ_3246 SM00849 Metallo-beta-lactamase superfamily BCQ_3259 SM00849 Metallo-beta-lactamase superfamily BCQ_3260 SM00829 Enoylreductase BCQ_3288 SM00829 Enoylreductase BCQ_3290 SM00855 Phosphoglycerate mutase family BCQ_3292 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BCQ_3292 SM00534 ATPase domain of DNA mismatch repair MUTS family BCQ_3301 SM01321 BCQ_3301 BCQ_3302 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_3303 SM00829 Enoylreductase BCQ_3306 SM00028 Tetratricopeptide repeats BCQ_3316 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BCQ_3321 SM00062 Bacterial periplasmic substrate-binding proteins BCQ_3321 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BCQ_3322 SM00382 ATPases associated with a variety of cellular activities BCQ_3329 SM00479 BCQ_3329 BCQ_3330 SM00357 Cold shock protein domain BCQ_3336 SM00857 Resolvase, N terminal domain BCQ_3338 SM01022 BCQ_3338 BCQ_3349 SM00822 BCQ_3349 BCQ_3360 SM00852 Probable molybdopterin binding domain BCQ_3363 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_3367 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BCQ_3367 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BCQ_3387 SM00382 ATPases associated with a variety of cellular activities BCQ_3390 SM00434 DNA Topoisomerase IV BCQ_3391 SM00387 Histidine kinase-like ATPases BCQ_3391 SM00433 TopoisomeraseII BCQ_3392 SM00881 CoA binding domain BCQ_3393 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BCQ_3394 SM00448 cheY-homologous receiver domain BCQ_3394 SM00862 Transcriptional regulatory protein, C terminal BCQ_3398 SM01207 BCQ_3398 BCQ_3401 SM00257 Lysin motif BCQ_3401 SM00636 BCQ_3401 BCQ_3405 SM00479 BCQ_3405 BCQ_3407 SM00382 ATPases associated with a variety of cellular activities BCQ_3415 SM00860 SMI1 / KNR4 family BCQ_3419 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BCQ_3423 SM00530 Helix-turn-helix XRE-family like proteins BCQ_3429 SM00382 ATPases associated with a variety of cellular activities BCQ_3430 SM00530 Helix-turn-helix XRE-family like proteins BCQ_3437 SM00644 BCQ_3437 BCQ_3437 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BCQ_3438 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BCQ_3441 SM00091 PAS domain BCQ_3441 SM00387 Histidine kinase-like ATPases BCQ_3441 SM00388 His Kinase A (phosphoacceptor) domain BCQ_3448 SM01058 CarD-like/TRCF domain BCQ_3469 SM00382 ATPases associated with a variety of cellular activities BCQ_3478 SM00644 BCQ_3478 BCQ_3482 SM00382 ATPases associated with a variety of cellular activities BCQ_3483 SM00382 ATPases associated with a variety of cellular activities BCQ_3486 SM00861 Transketolase, pyrimidine binding domain BCQ_3490 SM00062 Bacterial periplasmic substrate-binding proteins BCQ_3493 SM00857 Resolvase, N terminal domain BCQ_3498 SM01230 BCQ_3498 BCQ_3499 SM00422 helix_turn_helix, mercury resistance BCQ_3504 SM00382 ATPases associated with a variety of cellular activities BCQ_3511 SM00287 Bacterial SH3 domain homologues BCQ_3514 SM00420 helix_turn_helix, Deoxyribose operon repressor BCQ_3514 SM01134 BCQ_3514 BCQ_3520 SM00636 BCQ_3520 BCQ_3523 SM00411 bacterial (prokaryotic) histone like domain BCQ_3530 SM00382 ATPases associated with a variety of cellular activities BCQ_3534 SM00342 helix_turn_helix, arabinose operon control protein BCQ_3536 SM00478 endonuclease III BCQ_3540 SM00052 Putative diguanylate phosphodiesterase BCQ_3540 SM00091 PAS domain BCQ_3540 SM00267 diguanylate cyclase BCQ_3544 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_3547 SM00148 Phospholipase C, catalytic domain (part); domain X BCQ_3548 SM00257 Lysin motif BCQ_3554 SM00853 MutL C terminal dimerisation domain BCQ_3554 SM01340 BCQ_3554 BCQ_3555 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BCQ_3555 SM00534 ATPase domain of DNA mismatch repair MUTS family BCQ_3558 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_3564 SM00322 K homology RNA-binding domain BCQ_3564 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_3566 SM00382 ATPases associated with a variety of cellular activities BCQ_3567 SM00852 Probable molybdopterin binding domain BCQ_3577 SM00382 ATPases associated with a variety of cellular activities BCQ_3579 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_3579 SM00866 BCQ_3579 BCQ_3580 SM00382 ATPases associated with a variety of cellular activities BCQ_3580 SM00843 BCQ_3580 BCQ_3583 SM00849 Metallo-beta-lactamase superfamily BCQ_3584 SM01130 BCQ_3584 BCQ_3586 SM00859 Semialdehyde dehydrogenase, NAD binding domain BCQ_3592 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_3592 SM00322 K homology RNA-binding domain BCQ_3593 SM00904 Riboflavin kinase BCQ_3600 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_3600 SM00322 K homology RNA-binding domain BCQ_3602 SM00479 BCQ_3602 BCQ_3602 SM00481 DNA polymerase alpha chain like domain BCQ_3605 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BCQ_3614 SM00382 ATPases associated with a variety of cellular activities BCQ_3614 SM01086 C-terminal, D2-small domain, of ClpB protein BCQ_3618 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BCQ_3618 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BCQ_3620 SM00881 CoA binding domain BCQ_3630 SM00382 ATPases associated with a variety of cellular activities BCQ_3630 SM00962 SRP54-type protein, GTPase domain BCQ_3630 SM00963 SRP54-type protein, helical bundle domain BCQ_3632 SM00382 ATPases associated with a variety of cellular activities BCQ_3632 SM00962 SRP54-type protein, GTPase domain BCQ_3632 SM00963 SRP54-type protein, helical bundle domain BCQ_3633 SM00968 SMC proteins Flexible Hinge Domain BCQ_3634 SM00358 Double-stranded RNA binding motif BCQ_3634 SM00535 Ribonuclease III family BCQ_3636 SM00822 BCQ_3636 BCQ_3637 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BCQ_3640 SM00487 DEAD-like helicases superfamily BCQ_3640 SM00490 helicase superfamily c-terminal domain BCQ_3641 SM01120 BCQ_3641 BCQ_3641 SM01121 BCQ_3641 BCQ_3644 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BCQ_3647 SM00220 Serine/Threonine protein kinases, catalytic domain BCQ_3647 SM00740 BCQ_3647 BCQ_3648 SM00331 Sigma factor PP2C-like phosphatases BCQ_3648 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BCQ_3653 SM00487 DEAD-like helicases superfamily BCQ_3653 SM00490 helicase superfamily c-terminal domain BCQ_3655 SM01409 BCQ_3655 BCQ_3656 SM00072 Guanylate kinase homologues. BCQ_3659 SM00831 Cation transporter/ATPase, N-terminus BCQ_3669 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BCQ_3672 SM00851 MGS-like domain BCQ_3672 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BCQ_3672 SM01209 BCQ_3672 BCQ_3673 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BCQ_3678 SM00363 S4 RNA-binding domain BCQ_3683 SM00363 S4 RNA-binding domain BCQ_3692 SM00864 Tubulin/FtsZ family, GTPase domain BCQ_3692 SM00865 Tubulin/FtsZ family, C-terminal domain BCQ_3693 SM00842 Cell division protein FtsA BCQ_3701 SM00740 BCQ_3701 BCQ_3702 SM00740 BCQ_3702 BCQ_3709 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BCQ_3712 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BCQ_3722 SM00855 Phosphoglycerate mutase family BCQ_3735 SM00878 Biotin carboxylase C-terminal domain BCQ_3739 SM00670 Large family of predicted nucleotide-binding domains BCQ_3744 SM00838 Elongation factor G C-terminus BCQ_3760 SM00861 Transketolase, pyrimidine binding domain BCQ_3766 SM00849 Metallo-beta-lactamase superfamily BCQ_3777 SM00052 Putative diguanylate phosphodiesterase BCQ_3796 SM00387 Histidine kinase-like ATPases BCQ_3796 SM00388 His Kinase A (phosphoacceptor) domain BCQ_3799 SM00354 helix_turn _helix lactose operon repressor BCQ_3803 SM00642 Alpha-amylase domain BCQ_3804 SM00642 Alpha-amylase domain BCQ_3805 SM00382 ATPases associated with a variety of cellular activities BCQ_3812 SM00382 ATPases associated with a variety of cellular activities BCQ_3828 SM01007 Class II Aldolase and Adducin N-terminal domain BCQ_3834 SM00267 diguanylate cyclase BCQ_3841 SM01061 CAT RNA binding domain BCQ_3843 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_3843 SM00866 BCQ_3843 BCQ_3846 SM00849 Metallo-beta-lactamase superfamily BCQ_3864 SM00387 Histidine kinase-like ATPases BCQ_3866 SM00936 Penicillin-binding protein 5, C-terminal domain BCQ_3867 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_3868 SM00382 ATPases associated with a variety of cellular activities BCQ_3872 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_3876 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BCQ_3895 SM00354 helix_turn _helix lactose operon repressor BCQ_3904 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_3904 SM00876 Biotin and Thiamin Synthesis associated domain BCQ_3915 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_3922 SM00859 Semialdehyde dehydrogenase, NAD binding domain BCQ_3925 SM00849 Metallo-beta-lactamase superfamily BCQ_3930 SM00849 Metallo-beta-lactamase superfamily BCQ_3940 SM00382 ATPases associated with a variety of cellular activities BCQ_3942 SM00062 Bacterial periplasmic substrate-binding proteins BCQ_3942 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BCQ_3948 SM00861 Transketolase, pyrimidine binding domain BCQ_3952 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BCQ_3954 SM00091 PAS domain BCQ_3954 SM00382 ATPases associated with a variety of cellular activities BCQ_3958 SM00448 cheY-homologous receiver domain BCQ_3959 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BCQ_3963 SM00861 Transketolase, pyrimidine binding domain BCQ_3970 SM00878 Biotin carboxylase C-terminal domain BCQ_3980 SM00382 ATPases associated with a variety of cellular activities BCQ_3984 SM00841 Elongation factor P, C-terminal BCQ_3984 SM01185 BCQ_3984 BCQ_3991 SM00529 Helix-turn-helix diphteria tox regulatory element BCQ_3996 SM00450 Rhodanese Homology Domain BCQ_3997 SM00354 helix_turn _helix lactose operon repressor BCQ_4006 SM00382 ATPases associated with a variety of cellular activities BCQ_4007 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_4013 SM00487 DEAD-like helicases superfamily BCQ_4013 SM00490 helicase superfamily c-terminal domain BCQ_4020 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BCQ_4027 SM00382 ATPases associated with a variety of cellular activities BCQ_4038 SM01018 B12 binding domain BCQ_4044 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_4047 SM00849 Metallo-beta-lactamase superfamily BCQ_4054 SM00382 ATPases associated with a variety of cellular activities BCQ_4072 SM00518 AP endonuclease family 2 BCQ_4073 SM00487 DEAD-like helicases superfamily BCQ_4073 SM00490 helicase superfamily c-terminal domain BCQ_4080 SM00400 zinc finger BCQ_4080 SM00493 BCQ_4080 BCQ_4080 SM00766 DNA primase DnaG DnaB-binding BCQ_4083 SM00116 Domain in cystathionine beta-synthase and other proteins. BCQ_4090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_4096 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_4099 SM00271 DnaJ molecular chaperone homology domain BCQ_4103 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_4105 SM00838 Elongation factor G C-terminus BCQ_4111 SM00849 Metallo-beta-lactamase superfamily BCQ_4113 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BCQ_4117 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_4119 SM01103 BCQ_4119 BCQ_4129 SM00954 Region found in RelA / SpoT proteins BCQ_4131 SM00098 Alkaline phosphatase homologues BCQ_4137 SM00855 Phosphoglycerate mutase family BCQ_4146 SM00530 Helix-turn-helix XRE-family like proteins BCQ_4151 SM00382 ATPases associated with a variety of cellular activities BCQ_4170 SM00732 Likely ribonuclease with RNase H fold. BCQ_4172 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BCQ_4179 SM00028 Tetratricopeptide repeats BCQ_4193 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_4193 SM00954 Region found in RelA / SpoT proteins BCQ_4202 SM01323 BCQ_4202 BCQ_4206 SM00382 ATPases associated with a variety of cellular activities BCQ_4207 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BCQ_4211 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_4215 SM00257 Lysin motif BCQ_4225 SM00382 ATPases associated with a variety of cellular activities BCQ_4226 SM00387 Histidine kinase-like ATPases BCQ_4227 SM00448 cheY-homologous receiver domain BCQ_4227 SM00862 Transcriptional regulatory protein, C terminal BCQ_4229 SM01317 BCQ_4229 BCQ_4247 SM00257 Lysin motif BCQ_4249 SM01004 Delta-aminolevulinic acid dehydratase BCQ_4254 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_4257 SM00382 ATPases associated with a variety of cellular activities BCQ_4257 SM00464 Found in ATP-dependent protease La (LON) BCQ_4258 SM00382 ATPases associated with a variety of cellular activities BCQ_4259 SM00382 ATPases associated with a variety of cellular activities BCQ_4259 SM00994 ClpX C4-type zinc finger BCQ_4259 SM01086 C-terminal, D2-small domain, of ClpB protein BCQ_4270 SM00530 Helix-turn-helix XRE-family like proteins BCQ_4274 SM00857 Resolvase, N terminal domain BCQ_4287 SM00909 Sporulation and spore germination BCQ_4297 SM00857 Resolvase, N terminal domain BCQ_4299 SM00857 Resolvase, N terminal domain BCQ_4300 SM00857 Resolvase, N terminal domain BCQ_4313 SM00530 Helix-turn-helix XRE-family like proteins BCQ_4318 SM00382 ATPases associated with a variety of cellular activities BCQ_4328 SM00465 GIY-YIG type nucleases (URI domain) BCQ_4330 SM00893 Electron transfer flavoprotein domain BCQ_4331 SM00893 Electron transfer flavoprotein domain BCQ_4341 SM00382 ATPases associated with a variety of cellular activities BCQ_4342 SM00387 Histidine kinase-like ATPases BCQ_4342 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4343 SM00448 cheY-homologous receiver domain BCQ_4343 SM00862 Transcriptional regulatory protein, C terminal BCQ_4346 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BCQ_4350 SM00382 ATPases associated with a variety of cellular activities BCQ_4353 SM00725 NEAr Transporter domain BCQ_4354 SM00725 NEAr Transporter domain BCQ_4356 SM00363 S4 RNA-binding domain BCQ_4358 SM00463 Small MutS-related domain BCQ_4358 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BCQ_4358 SM00534 ATPase domain of DNA mismatch repair MUTS family BCQ_4359 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BCQ_4359 SM00481 DNA polymerase alpha chain like domain BCQ_4359 SM00483 DNA polymerase X family BCQ_4366 SM00873 B3/4 domain BCQ_4366 SM00874 tRNA synthetase B5 domain BCQ_4366 SM00896 Ferredoxin-fold anticodon binding domain BCQ_4368 SM00967 RNA 2'-O ribose methyltransferase substrate binding BCQ_4380 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BCQ_4382 SM00382 ATPases associated with a variety of cellular activities BCQ_4386 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BCQ_4389 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BCQ_4389 SM01232 BCQ_4389 BCQ_4390 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BCQ_4390 SM00474 3'-5' exonuclease BCQ_4390 SM00475 5'-3' exonuclease BCQ_4390 SM00482 DNA polymerase A domain BCQ_4391 SM00091 PAS domain BCQ_4391 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4391 SM00387 Histidine kinase-like ATPases BCQ_4391 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4392 SM00448 cheY-homologous receiver domain BCQ_4392 SM00862 Transcriptional regulatory protein, C terminal BCQ_4397 SM01329 BCQ_4397 BCQ_4406 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_4407 SM00919 Malic enzyme, NAD binding domain BCQ_4407 SM01274 BCQ_4407 BCQ_4408 SM00481 DNA polymerase alpha chain like domain BCQ_4416 SM00116 Domain in cystathionine beta-synthase and other proteins. BCQ_4418 SM00849 Metallo-beta-lactamase superfamily BCQ_4431 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BCQ_4431 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BCQ_4434 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_4436 SM01260 BCQ_4436 BCQ_4440 SM00382 ATPases associated with a variety of cellular activities BCQ_4463 SM00981 BCQ_4463 BCQ_4471 SM00363 S4 RNA-binding domain BCQ_4471 SM01390 BCQ_4471 BCQ_4474 SM00363 S4 RNA-binding domain BCQ_4480 SM00116 Domain in cystathionine beta-synthase and other proteins. BCQ_4484 SM00448 cheY-homologous receiver domain BCQ_4484 SM00862 Transcriptional regulatory protein, C terminal BCQ_4485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4485 SM00387 Histidine kinase-like ATPases BCQ_4485 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4486 SM00248 ankyrin repeats BCQ_4492 SM00354 helix_turn _helix lactose operon repressor BCQ_4503 SM00382 ATPases associated with a variety of cellular activities BCQ_4503 SM00843 BCQ_4503 BCQ_4511 SM00849 Metallo-beta-lactamase superfamily BCQ_4515 SM00642 Alpha-amylase domain BCQ_4518 SM00420 helix_turn_helix, Deoxyribose operon repressor BCQ_4524 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_4528 SM01058 CarD-like/TRCF domain BCQ_4537 SM00852 Probable molybdopterin binding domain BCQ_4540 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_4544 SM00450 Rhodanese Homology Domain BCQ_4559 SM00382 ATPases associated with a variety of cellular activities BCQ_4563 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_4565 SM00382 ATPases associated with a variety of cellular activities BCQ_4575 SM00014 Acid phosphatase homologues BCQ_4578 SM00852 Probable molybdopterin binding domain BCQ_4589 SM00387 Histidine kinase-like ATPases BCQ_4590 SM00387 Histidine kinase-like ATPases BCQ_4590 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4597 SM00382 ATPases associated with a variety of cellular activities BCQ_4607 SM01234 BCQ_4607 BCQ_4608 SM00947 Carbonic anhydrase BCQ_4612 SM00894 Excalibur calcium-binding domain BCQ_4623 SM00899 BCQ_4623 BCQ_4625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4625 SM00387 Histidine kinase-like ATPases BCQ_4625 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4626 SM00448 cheY-homologous receiver domain BCQ_4626 SM00862 Transcriptional regulatory protein, C terminal BCQ_4633 SM00046 Diacylglycerol kinase catalytic domain (presumed) BCQ_4638 SM00382 ATPases associated with a variety of cellular activities BCQ_4643 SM00342 helix_turn_helix, arabinose operon control protein BCQ_4648 SM00382 ATPases associated with a variety of cellular activities BCQ_4649 SM00342 helix_turn_helix, arabinose operon control protein BCQ_4649 SM00871 Bacterial transcription activator, effector binding domain BCQ_4651 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_4652 SM00448 cheY-homologous receiver domain BCQ_4652 SM00862 Transcriptional regulatory protein, C terminal BCQ_4653 SM00387 Histidine kinase-like ATPases BCQ_4656 SM00382 ATPases associated with a variety of cellular activities BCQ_4660 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_4660 SM00866 BCQ_4660 BCQ_4666 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4666 SM00387 Histidine kinase-like ATPases BCQ_4666 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4667 SM00448 cheY-homologous receiver domain BCQ_4667 SM00862 Transcriptional regulatory protein, C terminal BCQ_4668 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BCQ_4677 SM00357 Cold shock protein domain BCQ_4685 SM00642 Alpha-amylase domain BCQ_4722 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_4724 SM00344 helix_turn_helix ASNC type BCQ_4731 SM01298 BCQ_4731 BCQ_4732 SM00479 BCQ_4732 BCQ_4749 SM00871 Bacterial transcription activator, effector binding domain BCQ_4759 SM00382 ATPases associated with a variety of cellular activities BCQ_4764 SM00860 SMI1 / KNR4 family BCQ_4785 SM00422 helix_turn_helix, mercury resistance BCQ_4788 SM00855 Phosphoglycerate mutase family BCQ_4790 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_4799 SM00382 ATPases associated with a variety of cellular activities BCQ_4804 SM00382 ATPases associated with a variety of cellular activities BCQ_4804 SM00930 BCQ_4804 BCQ_4807 SM00493 BCQ_4807 BCQ_4819 SM00530 Helix-turn-helix XRE-family like proteins BCQ_4822 SM00849 Metallo-beta-lactamase superfamily BCQ_4832 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_4832 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4849 SM00530 Helix-turn-helix XRE-family like proteins BCQ_4853 SM00448 cheY-homologous receiver domain BCQ_4853 SM00862 Transcriptional regulatory protein, C terminal BCQ_4854 SM00387 Histidine kinase-like ATPases BCQ_4854 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4858 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_4858 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4859 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_4859 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4863 SM00347 helix_turn_helix multiple antibiotic resistance protein BCQ_4880 SM01276 BCQ_4880 BCQ_4887 SM00363 S4 RNA-binding domain BCQ_4891 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BCQ_4892 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_4899 SM00382 ATPases associated with a variety of cellular activities BCQ_4903 SM00382 ATPases associated with a variety of cellular activities BCQ_4907 SM00448 cheY-homologous receiver domain BCQ_4907 SM00862 Transcriptional regulatory protein, C terminal BCQ_4910 SM00382 ATPases associated with a variety of cellular activities BCQ_4912 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_4912 SM00387 Histidine kinase-like ATPases BCQ_4912 SM00388 His Kinase A (phosphoacceptor) domain BCQ_4913 SM00448 cheY-homologous receiver domain BCQ_4913 SM00862 Transcriptional regulatory protein, C terminal BCQ_4924 SM00342 helix_turn_helix, arabinose operon control protein BCQ_4924 SM00871 Bacterial transcription activator, effector binding domain BCQ_4925 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_4930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_4934 SM00316 Ribosomal protein S1-like RNA-binding domain BCQ_4934 SM00357 Cold shock protein domain BCQ_4934 SM00955 BCQ_4934 BCQ_4940 SM01192 BCQ_4940 BCQ_4940 SM01193 BCQ_4940 BCQ_4944 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BCQ_4949 SM00382 ATPases associated with a variety of cellular activities BCQ_4951 SM00382 ATPases associated with a variety of cellular activities BCQ_4952 SM00421 helix_turn_helix, Lux Regulon BCQ_4954 SM00387 Histidine kinase-like ATPases BCQ_4955 SM00421 helix_turn_helix, Lux Regulon BCQ_4955 SM00448 cheY-homologous receiver domain BCQ_4956 SM01260 BCQ_4956 BCQ_4980 SM00028 Tetratricopeptide repeats BCQ_4989 SM00487 DEAD-like helicases superfamily BCQ_4989 SM00490 helicase superfamily c-terminal domain BCQ_4991 SM00422 helix_turn_helix, mercury resistance BCQ_4996 SM00530 Helix-turn-helix XRE-family like proteins BCQ_4999 SM00422 helix_turn_helix, mercury resistance BCQ_5003 SM00382 ATPases associated with a variety of cellular activities BCQ_5005 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BCQ_5005 SM00245 tail specific protease BCQ_5007 SM00382 ATPases associated with a variety of cellular activities BCQ_5009 SM00937 BCQ_5009 BCQ_5010 SM00957 SecA DEAD-like domain BCQ_5010 SM00958 SecA preprotein cross-linking domain BCQ_5012 SM00357 Cold shock protein domain BCQ_5014 SM00487 DEAD-like helicases superfamily BCQ_5014 SM00490 helicase superfamily c-terminal domain BCQ_5022 SM00984 UDP binding domain BCQ_5027 SM00382 ATPases associated with a variety of cellular activities BCQ_5028 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BCQ_5038 SM00850 LytTr DNA-binding domain BCQ_5063 SM00287 Bacterial SH3 domain homologues BCQ_5069 SM00287 Bacterial SH3 domain homologues BCQ_5075 SM00487 DEAD-like helicases superfamily BCQ_5075 SM00490 helicase superfamily c-terminal domain BCQ_5084 SM00382 ATPases associated with a variety of cellular activities BCQ_5089 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_5089 SM00387 Histidine kinase-like ATPases BCQ_5089 SM00388 His Kinase A (phosphoacceptor) domain BCQ_5090 SM00448 cheY-homologous receiver domain BCQ_5090 SM00862 Transcriptional regulatory protein, C terminal BCQ_5124 SM00382 ATPases associated with a variety of cellular activities BCQ_5125 SM00850 LytTr DNA-binding domain BCQ_5141 SM00052 Putative diguanylate phosphodiesterase BCQ_5141 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BCQ_5141 SM00091 PAS domain BCQ_5141 SM00267 diguanylate cyclase BCQ_5145 SM00382 ATPases associated with a variety of cellular activities BCQ_5159 SM00226 Low molecular weight phosphatase family BCQ_5162 SM00903 Flavin reductase like domain BCQ_5170 SM00937 BCQ_5170 BCQ_5172 SM00357 Cold shock protein domain BCQ_5172 SM00382 ATPases associated with a variety of cellular activities BCQ_5172 SM00959 Rho termination factor, N-terminal domain BCQ_5177 SM00448 cheY-homologous receiver domain BCQ_5187 SM00155 Phospholipase D. Active site motifs. BCQ_5189 SM00052 Putative diguanylate phosphodiesterase BCQ_5189 SM00267 diguanylate cyclase BCQ_5191 SM00530 Helix-turn-helix XRE-family like proteins BCQ_5193 SM00421 helix_turn_helix, Lux Regulon BCQ_5193 SM00448 cheY-homologous receiver domain BCQ_5196 SM00382 ATPases associated with a variety of cellular activities BCQ_5204 SM00836 DALR anticodon binding domain BCQ_5204 SM01016 Arginyl tRNA synthetase N terminal dom BCQ_5212 SM00422 helix_turn_helix, mercury resistance BCQ_5219 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BCQ_5221 SM00382 ATPases associated with a variety of cellular activities BCQ_5230 SM00936 Penicillin-binding protein 5, C-terminal domain BCQ_5240 SM00986 Uracil DNA glycosylase superfamily BCQ_5240 SM00987 UreE urease accessory protein, C-terminal domain BCQ_5242 SM00382 ATPases associated with a variety of cellular activities BCQ_5244 SM00354 helix_turn _helix lactose operon repressor BCQ_5250 SM00100 Cyclic nucleotide-monophosphate binding domain BCQ_5252 SM00421 helix_turn_helix, Lux Regulon BCQ_5252 SM00448 cheY-homologous receiver domain BCQ_5253 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BCQ_5255 SM00267 diguanylate cyclase BCQ_5258 SM00448 cheY-homologous receiver domain BCQ_5258 SM00850 LytTr DNA-binding domain BCQ_5264 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_5273 SM00382 ATPases associated with a variety of cellular activities BCQ_5276 SM00382 ATPases associated with a variety of cellular activities BCQ_5283 SM00448 cheY-homologous receiver domain BCQ_5283 SM00850 LytTr DNA-binding domain BCQ_5284 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BCQ_5284 SM00387 Histidine kinase-like ATPases BCQ_5301 SM00487 DEAD-like helicases superfamily BCQ_5301 SM00490 helicase superfamily c-terminal domain BCQ_5302 SM01240 BCQ_5302 BCQ_5307 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BCQ_5308 SM00849 Metallo-beta-lactamase superfamily BCQ_5311 SM00091 PAS domain BCQ_5311 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BCQ_5311 SM00387 Histidine kinase-like ATPases BCQ_5311 SM00388 His Kinase A (phosphoacceptor) domain BCQ_5312 SM00448 cheY-homologous receiver domain BCQ_5312 SM00862 Transcriptional regulatory protein, C terminal BCQ_5317 SM00788 Adenylosuccinate synthetase BCQ_5320 SM00267 diguanylate cyclase BCQ_5329 SM00470 ParB-like nuclease domain BCQ_5331 SM00470 ParB-like nuclease domain BCQ_5333 SM01228 BCQ_5333 BCQ_5335 SM00393 Putative single-stranded nucleic acids-binding domain BCQ_5335 SM01245 BCQ_5335 BCQ_PI001 SM00480 DNA polymerase III beta subunit BCQ_PI015 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain BCQ_PI045 SM00752 Horizontally Transferred TransMembrane Domain BCQ_PI048 SM00344 helix_turn_helix ASNC type BCQ_PI052 SM00155 Phospholipase D. Active site motifs. BCQ_PI056 SM00857 Resolvase, N terminal domain BCQ_PI065 SM00860 SMI1 / KNR4 family BCQ_PI072 SM00857 Resolvase, N terminal domain BCQ_PI089 SM00028 Tetratricopeptide repeats BCQ_PI096 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_PI098 SM00318 Staphylococcal nuclease homologues BCQ_PI100 SM00382 ATPases associated with a variety of cellular activities BCQ_PI101 SM00729 Elongator protein 3, MiaB family, Radical SAM BCQ_PI103 SM00345 helix_turn_helix gluconate operon transcriptional repressor BCQ_PI104 SM00382 ATPases associated with a variety of cellular activities BCQ_PI108 SM00382 ATPases associated with a variety of cellular activities BCQ_PI119 SM00507 HNH nucleases BCQ_PI121 SM00507 HNH nucleases BCQ_PI133 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_PI135 SM00060 Fibronectin type 3 domain BCQ_PI135 SM00495 Chitin-binding domain type 3 BCQ_PI138 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BCQ_PI148 SM00028 Tetratricopeptide repeats BCQ_PI155 SM00857 Resolvase, N terminal domain BCQ_PI181 SM00829 Enoylreductase BCQ_PI182 SM00857 Resolvase, N terminal domain BCQ_PI184 SM00411 bacterial (prokaryotic) histone like domain BCQ_PI186 SM00966 SpoVT / AbrB like domain BCQ_PI187 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BCQ_PI194 SM00344 helix_turn_helix ASNC type BCQ_PI215 SM00864 Tubulin/FtsZ family, GTPase domain BCQ_PI220 SM00843 BCQ_PI220 BCQ_PI222 SM00530 Helix-turn-helix XRE-family like proteins BCQ_PT05 SM00479 BCQ_PT05 BCQ_PT15 SM00287 Bacterial SH3 domain homologues BCQ_PT15 SM00644 BCQ_PT15 BCQ_PT41 SM00857 Resolvase, N terminal domain BCQ_PT63 SM00530 Helix-turn-helix XRE-family like proteins BCQ_PT64 SM00530 Helix-turn-helix XRE-family like proteins BCQ_PT68 SM00530 Helix-turn-helix XRE-family like proteins