BF33_1002 SM00530 Helix-turn-helix XRE-family like proteins BF33_1005 SM00382 ATPases associated with a variety of cellular activities BF33_101 SM00857 Resolvase, N terminal domain BF33_102 SM00497 Intron encoded nuclease repeat motif BF33_1021 SM00530 Helix-turn-helix XRE-family like proteins BF33_1032 SM00382 ATPases associated with a variety of cellular activities BF33_1047 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_1057 SM00287 Bacterial SH3 domain homologues BF33_1057 SM00644 BF33_1057 BF33_1061 SM00342 helix_turn_helix, arabinose operon control protein BF33_1073 SM00344 helix_turn_helix ASNC type BF33_1083 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_1083 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_1083 SM00319 Homologues of the ligand binding domain of Tar BF33_1090 SM00028 Tetratricopeptide repeats BF33_1091 SM00354 helix_turn _helix lactose operon repressor BF33_1107 SM00448 cheY-homologous receiver domain BF33_1107 SM00862 Transcriptional regulatory protein, C terminal BF33_1108 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_1108 SM00387 Histidine kinase-like ATPases BF33_1108 SM00388 His Kinase A (phosphoacceptor) domain BF33_1110 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_1112 SM00382 ATPases associated with a variety of cellular activities BF33_1122 SM00849 Metallo-beta-lactamase superfamily BF33_1132 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_1132 SM00387 Histidine kinase-like ATPases BF33_1132 SM00388 His Kinase A (phosphoacceptor) domain BF33_1133 SM00448 cheY-homologous receiver domain BF33_1133 SM00862 Transcriptional regulatory protein, C terminal BF33_1140 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_1147 SM00342 helix_turn_helix, arabinose operon control protein BF33_115 SM00507 HNH nucleases BF33_1154 SM00344 helix_turn_helix ASNC type BF33_1159 SM00448 cheY-homologous receiver domain BF33_1159 SM00862 Transcriptional regulatory protein, C terminal BF33_1160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_1160 SM00387 Histidine kinase-like ATPases BF33_1160 SM00388 His Kinase A (phosphoacceptor) domain BF33_1164 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_1166 SM00226 Low molecular weight phosphatase family BF33_1170 SM00421 helix_turn_helix, Lux Regulon BF33_118 SM00901 BF33_118 BF33_1194 SM01060 BF33_1194 BF33_1199 SM00387 Histidine kinase-like ATPases BF33_1200 SM00448 cheY-homologous receiver domain BF33_1211 SM00530 Helix-turn-helix XRE-family like proteins BF33_1212 SM00870 BF33_1212 BF33_1228 SM00849 Metallo-beta-lactamase superfamily BF33_1242 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_1246 SM00346 helix_turn_helix isocitrate lyase regulation BF33_1247 SM00796 Allophanate hydrolase subunit 1 BF33_1248 SM00797 Allophanate hydrolase subunit 2 BF33_1275 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_1280 SM00342 helix_turn_helix, arabinose operon control protein BF33_1280 SM00871 Bacterial transcription activator, effector binding domain BF33_1285 SM00382 ATPases associated with a variety of cellular activities BF33_1287 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_1288 SM00382 ATPases associated with a variety of cellular activities BF33_1296 SM00422 helix_turn_helix, mercury resistance BF33_1299 SM00855 Phosphoglycerate mutase family BF33_13 SM01103 BF33_13 BF33_131 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF33_1313 SM00889 Elongation factor G, domain IV BF33_1314 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_1317 SM00860 SMI1 / KNR4 family BF33_1323 SM01060 BF33_1323 BF33_1343 SM00850 LytTr DNA-binding domain BF33_1348 SM00530 Helix-turn-helix XRE-family like proteins BF33_1350 SM00098 Alkaline phosphatase homologues BF33_1354 SM00346 helix_turn_helix isocitrate lyase regulation BF33_1361 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF33_1365 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_1372 SM01133 BF33_1372 BF33_1376 SM00382 ATPases associated with a variety of cellular activities BF33_138 SM00487 DEAD-like helicases superfamily BF33_138 SM00490 helicase superfamily c-terminal domain BF33_1383 SM00091 PAS domain BF33_1383 SM00382 ATPases associated with a variety of cellular activities BF33_1388 SM00287 Bacterial SH3 domain homologues BF33_1395 SM00830 Chorismate mutase type II BF33_1404 SM00382 ATPases associated with a variety of cellular activities BF33_1422 SM00028 Tetratricopeptide repeats BF33_1428 SM00382 ATPases associated with a variety of cellular activities BF33_1429 SM00062 Bacterial periplasmic substrate-binding proteins BF33_144 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_1441 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_1442 SM00382 ATPases associated with a variety of cellular activities BF33_145 SM00382 ATPases associated with a variety of cellular activities BF33_1480 SM00448 cheY-homologous receiver domain BF33_1480 SM00862 Transcriptional regulatory protein, C terminal BF33_1481 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_1481 SM00387 Histidine kinase-like ATPases BF33_1481 SM00388 His Kinase A (phosphoacceptor) domain BF33_1482 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF33_1489 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF33_15 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_1503 SM00091 PAS domain BF33_1503 SM00382 ATPases associated with a variety of cellular activities BF33_1507 SM01130 BF33_1507 BF33_1513 SM01131 BF33_1513 BF33_1521 SM00341 Helicase and RNase D C-terminal BF33_1521 SM00487 DEAD-like helicases superfamily BF33_1521 SM00490 helicase superfamily c-terminal domain BF33_1521 SM00956 BF33_1521 BF33_1536 SM00849 Metallo-beta-lactamase superfamily BF33_1545 SM00060 Fibronectin type 3 domain BF33_1545 SM00495 Chitin-binding domain type 3 BF33_155 SM00354 helix_turn _helix lactose operon repressor BF33_1552 SM00116 Domain in cystathionine beta-synthase and other proteins. BF33_1552 SM00382 ATPases associated with a variety of cellular activities BF33_156 SM00450 Rhodanese Homology Domain BF33_1565 SM00861 Transketolase, pyrimidine binding domain BF33_1571 SM00420 helix_turn_helix, Deoxyribose operon repressor BF33_1571 SM01134 BF33_1571 BF33_1575 SM00382 ATPases associated with a variety of cellular activities BF33_1596 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_160 SM00529 Helix-turn-helix diphteria tox regulatory element BF33_1600 SM00871 Bacterial transcription activator, effector binding domain BF33_1604 SM00642 Alpha-amylase domain BF33_1625 SM00465 GIY-YIG type nucleases (URI domain) BF33_1646 SM00480 DNA polymerase III beta subunit BF33_1659 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_1667 SM00422 helix_turn_helix, mercury resistance BF33_167 SM00841 Elongation factor P, C-terminal BF33_167 SM01185 BF33_167 BF33_1679 SM00740 BF33_1679 BF33_1680 SM00014 Acid phosphatase homologues BF33_1681 SM00829 Enoylreductase BF33_1684 SM00387 Histidine kinase-like ATPases BF33_1684 SM00388 His Kinase A (phosphoacceptor) domain BF33_1687 SM00382 ATPases associated with a variety of cellular activities BF33_1692 SM00091 PAS domain BF33_1692 SM00387 Histidine kinase-like ATPases BF33_1692 SM00388 His Kinase A (phosphoacceptor) domain BF33_1709 SM00644 BF33_1709 BF33_171 SM00382 ATPases associated with a variety of cellular activities BF33_1727 SM00507 HNH nucleases BF33_1751 SM00382 ATPases associated with a variety of cellular activities BF33_1756 SM00530 Helix-turn-helix XRE-family like proteins BF33_1757 SM00530 Helix-turn-helix XRE-family like proteins BF33_1770 SM01209 BF33_1770 BF33_1771 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_1777 SM00382 ATPases associated with a variety of cellular activities BF33_1780 SM00382 ATPases associated with a variety of cellular activities BF33_1782 SM00387 Histidine kinase-like ATPases BF33_1783 SM00448 cheY-homologous receiver domain BF33_1783 SM00862 Transcriptional regulatory protein, C terminal BF33_1795 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_1798 SM00342 helix_turn_helix, arabinose operon control protein BF33_1804 SM00422 helix_turn_helix, mercury resistance BF33_1804 SM00871 Bacterial transcription activator, effector binding domain BF33_181 SM00878 Biotin carboxylase C-terminal domain BF33_1818 SM00448 cheY-homologous receiver domain BF33_1818 SM00862 Transcriptional regulatory protein, C terminal BF33_1819 SM00387 Histidine kinase-like ATPases BF33_1819 SM00388 His Kinase A (phosphoacceptor) domain BF33_1831 SM00878 Biotin carboxylase C-terminal domain BF33_1837 SM00382 ATPases associated with a variety of cellular activities BF33_1840 SM00450 Rhodanese Homology Domain BF33_1840 SM00849 Metallo-beta-lactamase superfamily BF33_1843 SM00052 Putative diguanylate phosphodiesterase BF33_1843 SM00091 PAS domain BF33_1843 SM00267 diguanylate cyclase BF33_1844 SM00382 ATPases associated with a variety of cellular activities BF33_1847 SM00646 BF33_1847 BF33_1852 SM00530 Helix-turn-helix XRE-family like proteins BF33_1866 SM00354 helix_turn _helix lactose operon repressor BF33_1867 SM00014 Acid phosphatase homologues BF33_188 SM00861 Transketolase, pyrimidine binding domain BF33_1881 SM00855 Phosphoglycerate mutase family BF33_1882 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_1887 SM00382 ATPases associated with a variety of cellular activities BF33_189 SM00363 S4 RNA-binding domain BF33_1893 SM00487 DEAD-like helicases superfamily BF33_1893 SM00490 helicase superfamily c-terminal domain BF33_1896 SM00849 Metallo-beta-lactamase superfamily BF33_19 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF33_1902 SM01207 BF33_1902 BF33_1916 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_1917 SM00835 Cupin BF33_192 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF33_1923 SM00530 Helix-turn-helix XRE-family like proteins BF33_1925 SM00646 BF33_1925 BF33_1927 SM00382 ATPases associated with a variety of cellular activities BF33_1928 SM00382 ATPases associated with a variety of cellular activities BF33_193 SM00448 cheY-homologous receiver domain BF33_1935 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF33_1947 SM00357 Cold shock protein domain BF33_1955 SM00530 Helix-turn-helix XRE-family like proteins BF33_1960 SM01059 Chloramphenicol acetyltransferase BF33_1964 SM00849 Metallo-beta-lactamase superfamily BF33_1970 SM00849 Metallo-beta-lactamase superfamily BF33_1977 SM00382 ATPases associated with a variety of cellular activities BF33_1978 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF33_1979 SM00363 S4 RNA-binding domain BF33_198 SM00091 PAS domain BF33_198 SM00382 ATPases associated with a variety of cellular activities BF33_1987 SM00411 bacterial (prokaryotic) histone like domain BF33_1991 SM00923 MbtH-like protein BF33_1992 SM00823 Phosphopantetheine attachment site BF33_1992 SM00824 Thioesterase BF33_1999 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_2 SM00954 Region found in RelA / SpoT proteins BF33_200 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF33_2027 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF33_2038 SM00530 Helix-turn-helix XRE-family like proteins BF33_204 SM00861 Transketolase, pyrimidine binding domain BF33_2044 SM00860 SMI1 / KNR4 family BF33_2046 SM00014 Acid phosphatase homologues BF33_2049 SM00219 Tyrosine kinase, catalytic domain BF33_2057 SM00382 ATPases associated with a variety of cellular activities BF33_2060 SM00882 Coenzyme A transferase BF33_2061 SM00882 Coenzyme A transferase BF33_2064 SM00387 Histidine kinase-like ATPases BF33_2064 SM00388 His Kinase A (phosphoacceptor) domain BF33_2067 SM01091 Transporter associated domain BF33_2075 SM00382 ATPases associated with a variety of cellular activities BF33_2087 SM00829 Enoylreductase BF33_2090 SM00421 helix_turn_helix, Lux Regulon BF33_2090 SM00448 cheY-homologous receiver domain BF33_2091 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF33_21 SM00849 Metallo-beta-lactamase superfamily BF33_210 SM00062 Bacterial periplasmic substrate-binding proteins BF33_210 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF33_2113 SM00563 Phosphate acyltransferases BF33_212 SM00382 ATPases associated with a variety of cellular activities BF33_2124 SM00382 ATPases associated with a variety of cellular activities BF33_2139 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_2139 SM00387 Histidine kinase-like ATPases BF33_2139 SM00388 His Kinase A (phosphoacceptor) domain BF33_2140 SM00448 cheY-homologous receiver domain BF33_2140 SM00862 Transcriptional regulatory protein, C terminal BF33_2151 SM00028 Tetratricopeptide repeats BF33_2153 SM00382 ATPases associated with a variety of cellular activities BF33_2156 SM00327 von Willebrand factor (vWF) type A domain BF33_2162 SM00028 Tetratricopeptide repeats BF33_2165 SM00836 DALR anticodon binding domain BF33_2165 SM01016 Arginyl tRNA synthetase N terminal dom BF33_2166 SM00507 HNH nucleases BF33_2170 SM00567 E-Z type HEAT repeats BF33_2170 SM00932 Scaffold protein Nfu/NifU N terminal BF33_2175 SM00382 ATPases associated with a variety of cellular activities BF33_2176 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_2185 SM00894 Excalibur calcium-binding domain BF33_2197 SM00852 Probable molybdopterin binding domain BF33_2199 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_2200 SM00100 Cyclic nucleotide-monophosphate binding domain BF33_2200 SM00419 helix_turn_helix, cAMP Regulatory protein BF33_221 SM00849 Metallo-beta-lactamase superfamily BF33_2213 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF33_2216 SM00460 Transglutaminase/protease-like homologues BF33_2219 SM00849 Metallo-beta-lactamase superfamily BF33_2224 SM00829 Enoylreductase BF33_2228 SM00487 DEAD-like helicases superfamily BF33_2228 SM00490 helicase superfamily c-terminal domain BF33_225 SM00849 Metallo-beta-lactamase superfamily BF33_2256 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_2262 SM01005 Alanine racemase, C-terminal domain BF33_2265 SM00855 Phosphoglycerate mutase family BF33_2266 SM00244 prohibitin homologues BF33_228 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF33_2281 SM01091 Transporter associated domain BF33_2286 SM00155 Phospholipase D. Active site motifs. BF33_2296 SM00855 Phosphoglycerate mutase family BF33_2317 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF33_2329 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_2329 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_2336 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_2338 SM00966 SpoVT / AbrB like domain BF33_2343 SM00460 Transglutaminase/protease-like homologues BF33_235 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_2361 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_2361 SM00387 Histidine kinase-like ATPases BF33_2361 SM00388 His Kinase A (phosphoacceptor) domain BF33_2362 SM00448 cheY-homologous receiver domain BF33_2362 SM00862 Transcriptional regulatory protein, C terminal BF33_2377 SM00387 Histidine kinase-like ATPases BF33_2377 SM00388 His Kinase A (phosphoacceptor) domain BF33_2378 SM00448 cheY-homologous receiver domain BF33_2378 SM00862 Transcriptional regulatory protein, C terminal BF33_2379 SM00382 ATPases associated with a variety of cellular activities BF33_2381 SM00287 Bacterial SH3 domain homologues BF33_2387 SM00382 ATPases associated with a variety of cellular activities BF33_2388 SM00382 ATPases associated with a variety of cellular activities BF33_2392 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_2399 SM00382 ATPases associated with a variety of cellular activities BF33_2400 SM00382 ATPases associated with a variety of cellular activities BF33_2407 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF33_2426 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF33_2426 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF33_2426 SM00493 BF33_2426 BF33_2428 SM00287 Bacterial SH3 domain homologues BF33_2430 SM01011 Aminopeptidase P, N-terminal domain BF33_2436 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF33_2438 SM01133 BF33_2438 BF33_2448 SM00450 Rhodanese Homology Domain BF33_245 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_245 SM00876 Biotin and Thiamin Synthesis associated domain BF33_2451 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_2451 SM00387 Histidine kinase-like ATPases BF33_2451 SM00388 His Kinase A (phosphoacceptor) domain BF33_2452 SM00448 cheY-homologous receiver domain BF33_2452 SM00862 Transcriptional regulatory protein, C terminal BF33_2454 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_2463 SM00850 LytTr DNA-binding domain BF33_2469 SM00854 Bacterial capsule synthesis protein PGA_cap BF33_2501 SM00047 Lysozyme subfamily 2 BF33_2502 SM00646 BF33_2502 BF33_251 SM00704 CDGSH-type zinc finger. Function unknown. BF33_2513 SM00487 DEAD-like helicases superfamily BF33_2513 SM00490 helicase superfamily c-terminal domain BF33_2514 SM00448 cheY-homologous receiver domain BF33_2515 SM00387 Histidine kinase-like ATPases BF33_2516 SM00919 Malic enzyme, NAD binding domain BF33_2516 SM01274 BF33_2516 BF33_2520 SM00155 Phospholipase D. Active site motifs. BF33_2523 SM00382 ATPases associated with a variety of cellular activities BF33_2525 SM00421 helix_turn_helix, Lux Regulon BF33_2525 SM00448 cheY-homologous receiver domain BF33_2533 SM00530 Helix-turn-helix XRE-family like proteins BF33_2547 SM00422 helix_turn_helix, mercury resistance BF33_255 SM00354 helix_turn _helix lactose operon repressor BF33_2552 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF33_2554 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_2554 SM00895 BF33_2554 BF33_2562 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_2566 SM00855 Phosphoglycerate mutase family BF33_2569 SM00835 Cupin BF33_2573 SM00849 Metallo-beta-lactamase superfamily BF33_2573 SM01027 Beta-Casp domain BF33_2576 SM00382 ATPases associated with a variety of cellular activities BF33_2580 SM00530 Helix-turn-helix XRE-family like proteins BF33_2589 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF33_2591 SM00382 ATPases associated with a variety of cellular activities BF33_2591 SM00962 SRP54-type protein, GTPase domain BF33_2605 SM00260 Two component signalling adaptor domain BF33_2605 SM00448 cheY-homologous receiver domain BF33_2612 SM00382 ATPases associated with a variety of cellular activities BF33_2627 SM00138 Methyltransferase, chemotaxis proteins BF33_2631 SM00260 Two component signalling adaptor domain BF33_2631 SM00387 Histidine kinase-like ATPases BF33_2631 SM01231 BF33_2631 BF33_2632 SM00073 Histidine Phosphotransfer domain BF33_2633 SM00448 cheY-homologous receiver domain BF33_2651 SM00422 helix_turn_helix, mercury resistance BF33_2651 SM00871 Bacterial transcription activator, effector binding domain BF33_2652 SM00849 Metallo-beta-lactamase superfamily BF33_2662 SM00357 Cold shock protein domain BF33_2684 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF33_2684 SM00475 5'-3' exonuclease BF33_2690 SM00450 Rhodanese Homology Domain BF33_27 SM00838 Elongation factor G C-terminus BF33_2703 SM00491 BF33_2703 BF33_2705 SM00981 BF33_2705 BF33_2716 SM00060 Fibronectin type 3 domain BF33_2718 SM00478 endonuclease III BF33_2718 SM00525 BF33_2718 BF33_2723 SM00479 BF33_2723 BF33_2723 SM00491 BF33_2723 BF33_2732 SM00851 MGS-like domain BF33_2736 SM00986 Uracil DNA glycosylase superfamily BF33_2736 SM00987 UreE urease accessory protein, C-terminal domain BF33_274 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF33_2745 SM00914 BF33_2745 BF33_2746 SM00028 Tetratricopeptide repeats BF33_2750 SM00562 BF33_2750 BF33_2755 SM00411 bacterial (prokaryotic) histone like domain BF33_2766 SM01240 BF33_2766 BF33_2767 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_2770 SM00870 BF33_2770 BF33_2772 SM00644 BF33_2772 BF33_2775 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF33_2777 SM00422 helix_turn_helix, mercury resistance BF33_2779 SM00257 Lysin motif BF33_278 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_2781 SM00487 DEAD-like helicases superfamily BF33_2781 SM00490 helicase superfamily c-terminal domain BF33_2786 SM00257 Lysin motif BF33_2788 SM00091 PAS domain BF33_2788 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_2788 SM00387 Histidine kinase-like ATPases BF33_2788 SM00388 His Kinase A (phosphoacceptor) domain BF33_2789 SM00448 cheY-homologous receiver domain BF33_2789 SM00862 Transcriptional regulatory protein, C terminal BF33_2793 SM00363 S4 RNA-binding domain BF33_2804 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_2804 SM00387 Histidine kinase-like ATPases BF33_2804 SM00388 His Kinase A (phosphoacceptor) domain BF33_2808 SM00091 PAS domain BF33_2808 SM00387 Histidine kinase-like ATPases BF33_2808 SM00388 His Kinase A (phosphoacceptor) domain BF33_281 SM00382 ATPases associated with a variety of cellular activities BF33_282 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_2826 SM00421 helix_turn_helix, Lux Regulon BF33_2826 SM00448 cheY-homologous receiver domain BF33_2827 SM00387 Histidine kinase-like ATPases BF33_283 SM00936 Penicillin-binding protein 5, C-terminal domain BF33_285 SM00387 Histidine kinase-like ATPases BF33_2863 SM01329 BF33_2863 BF33_2864 SM00917 LeuA allosteric (dimerisation) domain BF33_2877 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_29 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_2901 SM00344 helix_turn_helix ASNC type BF33_2905 SM00382 ATPases associated with a variety of cellular activities BF33_2907 SM00382 ATPases associated with a variety of cellular activities BF33_2908 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_2911 SM00465 GIY-YIG type nucleases (URI domain) BF33_2911 SM00496 Intron-encoded nuclease repeat 2 BF33_2924 SM00387 Histidine kinase-like ATPases BF33_2924 SM00388 His Kinase A (phosphoacceptor) domain BF33_2928 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_2929 SM00387 Histidine kinase-like ATPases BF33_2929 SM00388 His Kinase A (phosphoacceptor) domain BF33_2933 SM01007 Class II Aldolase and Adducin N-terminal domain BF33_2934 SM00365 Leucine-rich repeat, SDS22-like subfamily BF33_2934 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF33_2934 SM00725 NEAr Transporter domain BF33_2936 SM00420 helix_turn_helix, Deoxyribose operon repressor BF33_2936 SM01134 BF33_2936 BF33_2941 SM00382 ATPases associated with a variety of cellular activities BF33_2948 SM00822 BF33_2948 BF33_2962 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_2962 SM00895 BF33_2962 BF33_2963 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_2963 SM00387 Histidine kinase-like ATPases BF33_2963 SM00388 His Kinase A (phosphoacceptor) domain BF33_2964 SM00448 cheY-homologous receiver domain BF33_2964 SM00862 Transcriptional regulatory protein, C terminal BF33_2974 SM00014 Acid phosphatase homologues BF33_2978 SM00382 ATPases associated with a variety of cellular activities BF33_2981 SM00530 Helix-turn-helix XRE-family like proteins BF33_2999 SM00507 HNH nucleases BF33_3008 SM01040 BRO family, N-terminal domain BF33_3012 SM00497 Intron encoded nuclease repeat motif BF33_3022 SM00530 Helix-turn-helix XRE-family like proteins BF33_3023 SM00861 Transketolase, pyrimidine binding domain BF33_304 SM00849 Metallo-beta-lactamase superfamily BF33_3047 SM00635 Bacterial Ig-like domain 2 BF33_307 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_307 SM00866 BF33_307 BF33_3077 SM00954 Region found in RelA / SpoT proteins BF33_3079 SM01118 BF33_3079 BF33_3085 SM00155 Phospholipase D. Active site motifs. BF33_309 SM01061 CAT RNA binding domain BF33_3092 SM00382 ATPases associated with a variety of cellular activities BF33_3093 SM00382 ATPases associated with a variety of cellular activities BF33_3101 SM00825 Beta-ketoacyl synthase BF33_3107 SM00382 ATPases associated with a variety of cellular activities BF33_3107 SM01086 C-terminal, D2-small domain, of ClpB protein BF33_3116 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_3118 SM00530 Helix-turn-helix XRE-family like proteins BF33_3119 SM00642 Alpha-amylase domain BF33_3121 SM01060 BF33_3121 BF33_3146 SM00357 Cold shock protein domain BF33_3159 SM00448 cheY-homologous receiver domain BF33_3159 SM00862 Transcriptional regulatory protein, C terminal BF33_316 SM00267 diguanylate cyclase BF33_3160 SM00387 Histidine kinase-like ATPases BF33_3160 SM00388 His Kinase A (phosphoacceptor) domain BF33_3163 SM00342 helix_turn_helix, arabinose operon control protein BF33_3163 SM00871 Bacterial transcription activator, effector binding domain BF33_3166 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_3180 SM00725 NEAr Transporter domain BF33_3186 SM00382 ATPases associated with a variety of cellular activities BF33_3191 SM00849 Metallo-beta-lactamase superfamily BF33_3193 SM00354 helix_turn _helix lactose operon repressor BF33_321 SM01007 Class II Aldolase and Adducin N-terminal domain BF33_3215 SM00422 helix_turn_helix, mercury resistance BF33_3236 SM00382 ATPases associated with a variety of cellular activities BF33_3239 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_3248 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_3259 SM00530 Helix-turn-helix XRE-family like proteins BF33_3264 SM00028 Tetratricopeptide repeats BF33_3272 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_3280 SM00829 Enoylreductase BF33_3288 SM00387 Histidine kinase-like ATPases BF33_3288 SM00388 His Kinase A (phosphoacceptor) domain BF33_3288 SM00448 cheY-homologous receiver domain BF33_3289 SM00138 Methyltransferase, chemotaxis proteins BF33_3290 SM00331 Sigma factor PP2C-like phosphatases BF33_3290 SM00448 cheY-homologous receiver domain BF33_33 SM00271 DnaJ molecular chaperone homology domain BF33_3303 SM00460 Transglutaminase/protease-like homologues BF33_3307 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_3309 SM01120 BF33_3309 BF33_3318 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_3342 SM00487 DEAD-like helicases superfamily BF33_3347 SM00487 DEAD-like helicases superfamily BF33_3347 SM00490 helicase superfamily c-terminal domain BF33_3350 SM00448 cheY-homologous receiver domain BF33_3351 SM00091 PAS domain BF33_3351 SM00387 Histidine kinase-like ATPases BF33_3355 SM00382 ATPases associated with a variety of cellular activities BF33_3356 SM00382 ATPases associated with a variety of cellular activities BF33_3368 SM00646 BF33_3368 BF33_338 SM00382 ATPases associated with a variety of cellular activities BF33_3383 SM00957 SecA DEAD-like domain BF33_3383 SM00958 SecA preprotein cross-linking domain BF33_3390 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_3391 SM00644 BF33_3391 BF33_3405 SM00382 ATPases associated with a variety of cellular activities BF33_3407 SM00062 Bacterial periplasmic substrate-binding proteins BF33_3407 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF33_3408 SM00382 ATPases associated with a variety of cellular activities BF33_3409 SM00382 ATPases associated with a variety of cellular activities BF33_3415 SM01060 BF33_3415 BF33_3429 SM00344 helix_turn_helix ASNC type BF33_3449 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF33_345 SM00382 ATPases associated with a variety of cellular activities BF33_346 SM00642 Alpha-amylase domain BF33_3460 SM00382 ATPases associated with a variety of cellular activities BF33_3462 SM00287 Bacterial SH3 domain homologues BF33_347 SM00642 Alpha-amylase domain BF33_3472 SM00829 Enoylreductase BF33_3477 SM00450 Rhodanese Homology Domain BF33_3478 SM00450 Rhodanese Homology Domain BF33_3480 SM00450 Rhodanese Homology Domain BF33_3480 SM00849 Metallo-beta-lactamase superfamily BF33_3481 SM00450 Rhodanese Homology Domain BF33_3483 SM00450 Rhodanese Homology Domain BF33_3504 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_351 SM00354 helix_turn _helix lactose operon repressor BF33_3521 SM00382 ATPases associated with a variety of cellular activities BF33_3523 SM00287 Bacterial SH3 domain homologues BF33_3526 SM00116 Domain in cystathionine beta-synthase and other proteins. BF33_354 SM00387 Histidine kinase-like ATPases BF33_354 SM00388 His Kinase A (phosphoacceptor) domain BF33_3555 SM00899 BF33_3555 BF33_3573 SM00530 Helix-turn-helix XRE-family like proteins BF33_3582 SM00530 Helix-turn-helix XRE-family like proteins BF33_3584 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_3591 SM00770 Zinc dependent phospholipase C (alpha toxin) BF33_3593 SM00829 Enoylreductase BF33_3599 SM00382 ATPases associated with a variety of cellular activities BF33_36 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_3602 SM00354 helix_turn _helix lactose operon repressor BF33_3604 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_3606 SM00382 ATPases associated with a variety of cellular activities BF33_3607 SM00382 ATPases associated with a variety of cellular activities BF33_3615 SM00448 cheY-homologous receiver domain BF33_3615 SM00862 Transcriptional regulatory protein, C terminal BF33_3616 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_3616 SM00387 Histidine kinase-like ATPases BF33_3616 SM00388 His Kinase A (phosphoacceptor) domain BF33_3626 SM00062 Bacterial periplasmic substrate-binding proteins BF33_3626 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF33_3627 SM00382 ATPases associated with a variety of cellular activities BF33_363 SM00267 diguanylate cyclase BF33_3634 SM00642 Alpha-amylase domain BF33_3636 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_3636 SM00866 BF33_3636 BF33_3638 SM00052 Putative diguanylate phosphodiesterase BF33_3638 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF33_3638 SM00091 PAS domain BF33_3638 SM00267 diguanylate cyclase BF33_3641 SM00155 Phospholipase D. Active site motifs. BF33_3642 SM00382 ATPases associated with a variety of cellular activities BF33_3643 SM00327 von Willebrand factor (vWF) type A domain BF33_3647 SM00382 ATPases associated with a variety of cellular activities BF33_3653 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_3656 SM01091 Transporter associated domain BF33_3666 SM00028 Tetratricopeptide repeats BF33_3666 SM00530 Helix-turn-helix XRE-family like proteins BF33_3669 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_3671 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF33_3671 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF33_3674 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF33_3674 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF33_3678 SM00448 cheY-homologous receiver domain BF33_3678 SM00862 Transcriptional regulatory protein, C terminal BF33_3679 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_3679 SM00387 Histidine kinase-like ATPases BF33_3679 SM00388 His Kinase A (phosphoacceptor) domain BF33_3681 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_3684 SM00919 Malic enzyme, NAD binding domain BF33_3684 SM01274 BF33_3684 BF33_3686 SM00448 cheY-homologous receiver domain BF33_3687 SM00387 Histidine kinase-like ATPases BF33_3688 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_3688 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_3691 SM00387 Histidine kinase-like ATPases BF33_3691 SM00388 His Kinase A (phosphoacceptor) domain BF33_3692 SM00448 cheY-homologous receiver domain BF33_3692 SM00862 Transcriptional regulatory protein, C terminal BF33_3697 SM00382 ATPases associated with a variety of cellular activities BF33_3699 SM00248 ankyrin repeats BF33_3703 SM00448 cheY-homologous receiver domain BF33_3704 SM00091 PAS domain BF33_3704 SM00387 Histidine kinase-like ATPases BF33_3705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_3705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_3706 SM00244 prohibitin homologues BF33_3708 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF33_371 SM00052 Putative diguanylate phosphodiesterase BF33_3712 SM00365 Leucine-rich repeat, SDS22-like subfamily BF33_3712 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF33_3712 SM00725 NEAr Transporter domain BF33_3715 SM00646 BF33_3715 BF33_3738 SM00507 HNH nucleases BF33_3762 SM00530 Helix-turn-helix XRE-family like proteins BF33_3763 SM00530 Helix-turn-helix XRE-family like proteins BF33_3768 SM00857 Resolvase, N terminal domain BF33_3769 SM00763 PrkA AAA domain BF33_3771 SM00052 Putative diguanylate phosphodiesterase BF33_3771 SM00091 PAS domain BF33_3771 SM00267 diguanylate cyclase BF33_3774 SM00567 E-Z type HEAT repeats BF33_3806 SM00382 ATPases associated with a variety of cellular activities BF33_3810 SM00382 ATPases associated with a variety of cellular activities BF33_3815 SM00478 endonuclease III BF33_3815 SM00525 BF33_3815 BF33_3831 SM00984 UDP binding domain BF33_384 SM00849 Metallo-beta-lactamase superfamily BF33_3841 SM00530 Helix-turn-helix XRE-family like proteins BF33_3846 SM00478 endonuclease III BF33_3865 SM00226 Low molecular weight phosphatase family BF33_3867 SM00831 Cation transporter/ATPase, N-terminus BF33_3876 SM00946 Prolyl-tRNA synthetase, C-terminal BF33_3881 SM00530 Helix-turn-helix XRE-family like proteins BF33_3889 SM00060 Fibronectin type 3 domain BF33_3889 SM00636 BF33_3889 BF33_3889 SM00637 BF33_3889 BF33_3890 SM00382 ATPases associated with a variety of cellular activities BF33_3891 SM00382 ATPases associated with a variety of cellular activities BF33_3895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_3895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_3899 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF33_3899 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF33_3899 SM00493 BF33_3899 BF33_390 SM00861 Transketolase, pyrimidine binding domain BF33_3903 SM00642 Alpha-amylase domain BF33_3905 SM00100 Cyclic nucleotide-monophosphate binding domain BF33_3905 SM00419 helix_turn_helix, cAMP Regulatory protein BF33_3911 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_3911 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_3912 SM00382 ATPases associated with a variety of cellular activities BF33_3913 SM00062 Bacterial periplasmic substrate-binding proteins BF33_3913 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF33_3934 SM01007 Class II Aldolase and Adducin N-terminal domain BF33_3943 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF33_3956 SM00382 ATPases associated with a variety of cellular activities BF33_3959 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF33_3960 SM00845 GatB domain BF33_3964 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_3970 SM00382 ATPases associated with a variety of cellular activities BF33_3970 SM00930 BF33_3970 BF33_3976 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF33_3976 SM00292 breast cancer carboxy-terminal domain BF33_3976 SM00532 Ligase N family BF33_3980 SM00244 prohibitin homologues BF33_3982 SM01209 BF33_3982 BF33_3982 SM01210 BF33_3982 BF33_3983 SM00798 AICARFT/IMPCHase bienzyme BF33_3983 SM00851 MGS-like domain BF33_3988 SM01211 BF33_3988 BF33_3991 SM00998 Adenylosuccinate lyase C-terminus BF33_3993 SM01001 AIR carboxylase BF33_4004 SM00448 cheY-homologous receiver domain BF33_4004 SM00862 Transcriptional regulatory protein, C terminal BF33_4005 SM00387 Histidine kinase-like ATPases BF33_4005 SM00388 His Kinase A (phosphoacceptor) domain BF33_4006 SM00382 ATPases associated with a variety of cellular activities BF33_4019 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4019 SM00387 Histidine kinase-like ATPases BF33_4019 SM00388 His Kinase A (phosphoacceptor) domain BF33_4020 SM00448 cheY-homologous receiver domain BF33_4020 SM00862 Transcriptional regulatory protein, C terminal BF33_4024 SM00883 Chaperonin 10 Kd subunit BF33_4027 SM00881 CoA binding domain BF33_4028 SM00382 ATPases associated with a variety of cellular activities BF33_4050 SM00731 SprT homologues. BF33_4051 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_4051 SM00732 Likely ribonuclease with RNase H fold. BF33_4054 SM01005 Alanine racemase, C-terminal domain BF33_4059 SM00487 DEAD-like helicases superfamily BF33_4059 SM00490 helicase superfamily c-terminal domain BF33_406 SM00838 Elongation factor G C-terminus BF33_4072 SM00382 ATPases associated with a variety of cellular activities BF33_4073 SM00382 ATPases associated with a variety of cellular activities BF33_4081 SM00382 ATPases associated with a variety of cellular activities BF33_4082 SM00421 helix_turn_helix, Lux Regulon BF33_4082 SM00448 cheY-homologous receiver domain BF33_4083 SM00387 Histidine kinase-like ATPases BF33_4084 SM00382 ATPases associated with a variety of cellular activities BF33_4094 SM00354 helix_turn _helix lactose operon repressor BF33_4096 SM00563 Phosphate acyltransferases BF33_411 SM00670 Large family of predicted nucleotide-binding domains BF33_4115 SM00342 helix_turn_helix, arabinose operon control protein BF33_4118 SM00382 ATPases associated with a variety of cellular activities BF33_4119 SM00382 ATPases associated with a variety of cellular activities BF33_4129 SM00829 Enoylreductase BF33_4131 SM00382 ATPases associated with a variety of cellular activities BF33_4131 SM00930 BF33_4131 BF33_4140 SM01350 BF33_4140 BF33_4143 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_4143 SM00895 BF33_4143 BF33_415 SM00878 Biotin carboxylase C-terminal domain BF33_4167 SM01251 BF33_4167 BF33_4170 SM00646 BF33_4170 BF33_4176 SM00382 ATPases associated with a variety of cellular activities BF33_4177 SM00382 ATPases associated with a variety of cellular activities BF33_4179 SM00662 RNA polymerases D BF33_4183 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_4195 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF33_4196 SM01374 BF33_4196 BF33_42 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_4200 SM00322 K homology RNA-binding domain BF33_4203 SM01382 BF33_4203 BF33_4203 SM01383 BF33_4203 BF33_4207 SM01403 BF33_4207 BF33_4209 SM00838 Elongation factor G C-terminus BF33_4209 SM00889 Elongation factor G, domain IV BF33_4213 SM00663 RNA polymerase I subunit A N-terminus BF33_4219 SM00649 Ribosomal protein L11/L12 BF33_4220 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF33_4222 SM00421 helix_turn_helix, Lux Regulon BF33_4224 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF33_4225 SM00535 Ribonuclease III family BF33_4226 SM00840 BF33_4226 BF33_4231 SM00670 Large family of predicted nucleotide-binding domains BF33_4233 SM00382 ATPases associated with a variety of cellular activities BF33_4234 SM00382 ATPases associated with a variety of cellular activities BF33_4234 SM01086 C-terminal, D2-small domain, of ClpB protein BF33_424 SM00507 HNH nucleases BF33_4257 SM00530 Helix-turn-helix XRE-family like proteins BF33_4259 SM00905 Dihydroneopterin aldolase BF33_4267 SM00382 ATPases associated with a variety of cellular activities BF33_4269 SM00977 TilS substrate C-terminal domain BF33_4270 SM00331 Sigma factor PP2C-like phosphatases BF33_4270 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF33_4273 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_4277 SM00363 S4 RNA-binding domain BF33_4280 SM00966 SpoVT / AbrB like domain BF33_4281 SM00487 DEAD-like helicases superfamily BF33_4281 SM00490 helicase superfamily c-terminal domain BF33_4281 SM00982 BF33_4281 BF33_4281 SM01058 CarD-like/TRCF domain BF33_4284 SM01400 BF33_4284 BF33_4293 SM00650 Ribosomal RNA adenine dimethylases BF33_4294 SM00493 BF33_4294 BF33_4297 SM00966 SpoVT / AbrB like domain BF33_430 SM00855 Phosphoglycerate mutase family BF33_4315 SM00493 BF33_4315 BF33_4317 SM00382 ATPases associated with a variety of cellular activities BF33_4327 SM00936 Penicillin-binding protein 5, C-terminal domain BF33_4328 SM00116 Domain in cystathionine beta-synthase and other proteins. BF33_4328 SM01240 BF33_4328 BF33_4336 SM00434 DNA Topoisomerase IV BF33_4337 SM00387 Histidine kinase-like ATPases BF33_4337 SM00433 TopoisomeraseII BF33_4340 SM00480 DNA polymerase III beta subunit BF33_4341 SM00382 ATPases associated with a variety of cellular activities BF33_4341 SM00760 Bacterial dnaA protein helix-turn-helix domain BF33_4345 SM00393 Putative single-stranded nucleic acids-binding domain BF33_4345 SM01245 BF33_4345 BF33_4347 SM01228 BF33_4347 BF33_4349 SM00470 ParB-like nuclease domain BF33_4351 SM00470 ParB-like nuclease domain BF33_4360 SM00267 diguanylate cyclase BF33_4363 SM00788 Adenylosuccinate synthetase BF33_4368 SM00448 cheY-homologous receiver domain BF33_4368 SM00862 Transcriptional regulatory protein, C terminal BF33_4369 SM00091 PAS domain BF33_4369 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4369 SM00387 Histidine kinase-like ATPases BF33_4369 SM00388 His Kinase A (phosphoacceptor) domain BF33_4372 SM00849 Metallo-beta-lactamase superfamily BF33_4373 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF33_4378 SM01240 BF33_4378 BF33_438 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF33_4380 SM00487 DEAD-like helicases superfamily BF33_4380 SM00490 helicase superfamily c-terminal domain BF33_4391 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF33_4391 SM00387 Histidine kinase-like ATPases BF33_4392 SM00448 cheY-homologous receiver domain BF33_4392 SM00850 LytTr DNA-binding domain BF33_4403 SM00382 ATPases associated with a variety of cellular activities BF33_4408 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_4414 SM00448 cheY-homologous receiver domain BF33_4414 SM00850 LytTr DNA-binding domain BF33_4417 SM00267 diguanylate cyclase BF33_4419 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF33_442 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF33_4420 SM00421 helix_turn_helix, Lux Regulon BF33_4420 SM00448 cheY-homologous receiver domain BF33_4422 SM00100 Cyclic nucleotide-monophosphate binding domain BF33_4429 SM00354 helix_turn _helix lactose operon repressor BF33_4431 SM00382 ATPases associated with a variety of cellular activities BF33_4433 SM00986 Uracil DNA glycosylase superfamily BF33_4433 SM00987 UreE urease accessory protein, C-terminal domain BF33_4442 SM00936 Penicillin-binding protein 5, C-terminal domain BF33_4452 SM00382 ATPases associated with a variety of cellular activities BF33_4454 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_4460 SM00422 helix_turn_helix, mercury resistance BF33_4468 SM00836 DALR anticodon binding domain BF33_4468 SM01016 Arginyl tRNA synthetase N terminal dom BF33_4477 SM00421 helix_turn_helix, Lux Regulon BF33_4478 SM00530 Helix-turn-helix XRE-family like proteins BF33_448 SM00740 BF33_448 BF33_4480 SM00052 Putative diguanylate phosphodiesterase BF33_4480 SM00267 diguanylate cyclase BF33_4482 SM00155 Phospholipase D. Active site motifs. BF33_449 SM00740 BF33_449 BF33_4492 SM00448 cheY-homologous receiver domain BF33_4496 SM00357 Cold shock protein domain BF33_4496 SM00382 ATPases associated with a variety of cellular activities BF33_4496 SM00959 Rho termination factor, N-terminal domain BF33_4499 SM00937 BF33_4499 BF33_4506 SM00903 Flavin reductase like domain BF33_4509 SM00226 Low molecular weight phosphatase family BF33_4522 SM00382 ATPases associated with a variety of cellular activities BF33_4526 SM00052 Putative diguanylate phosphodiesterase BF33_4526 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF33_4526 SM00091 PAS domain BF33_4526 SM00267 diguanylate cyclase BF33_4542 SM00850 LytTr DNA-binding domain BF33_4543 SM00382 ATPases associated with a variety of cellular activities BF33_4554 SM00382 ATPases associated with a variety of cellular activities BF33_4560 SM00448 cheY-homologous receiver domain BF33_4560 SM00862 Transcriptional regulatory protein, C terminal BF33_4561 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4561 SM00387 Histidine kinase-like ATPases BF33_4561 SM00388 His Kinase A (phosphoacceptor) domain BF33_4566 SM00382 ATPases associated with a variety of cellular activities BF33_457 SM00842 Cell division protein FtsA BF33_4576 SM00487 DEAD-like helicases superfamily BF33_4576 SM00490 helicase superfamily c-terminal domain BF33_458 SM00864 Tubulin/FtsZ family, GTPase domain BF33_458 SM00865 Tubulin/FtsZ family, C-terminal domain BF33_4582 SM00287 Bacterial SH3 domain homologues BF33_4588 SM00287 Bacterial SH3 domain homologues BF33_4619 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF33_4620 SM00382 ATPases associated with a variety of cellular activities BF33_4623 SM00984 UDP binding domain BF33_4630 SM00487 DEAD-like helicases superfamily BF33_4630 SM00490 helicase superfamily c-terminal domain BF33_4632 SM00357 Cold shock protein domain BF33_4634 SM00957 SecA DEAD-like domain BF33_4634 SM00958 SecA preprotein cross-linking domain BF33_4635 SM00937 BF33_4635 BF33_4637 SM00382 ATPases associated with a variety of cellular activities BF33_4639 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF33_4639 SM00245 tail specific protease BF33_4641 SM00382 ATPases associated with a variety of cellular activities BF33_4643 SM00382 ATPases associated with a variety of cellular activities BF33_4645 SM00422 helix_turn_helix, mercury resistance BF33_4648 SM00530 Helix-turn-helix XRE-family like proteins BF33_4653 SM00422 helix_turn_helix, mercury resistance BF33_4656 SM00487 DEAD-like helicases superfamily BF33_4656 SM00490 helicase superfamily c-terminal domain BF33_4664 SM00028 Tetratricopeptide repeats BF33_467 SM00363 S4 RNA-binding domain BF33_4684 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF33_4688 SM01192 BF33_4688 BF33_4688 SM01193 BF33_4688 BF33_4694 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_4694 SM00357 Cold shock protein domain BF33_4694 SM00955 BF33_4694 BF33_4697 SM00448 cheY-homologous receiver domain BF33_4697 SM00862 Transcriptional regulatory protein, C terminal BF33_4701 SM00382 ATPases associated with a variety of cellular activities BF33_4711 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_4712 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF33_4716 SM00363 S4 RNA-binding domain BF33_472 SM00363 S4 RNA-binding domain BF33_4723 SM01276 BF33_4723 BF33_4724 SM01276 BF33_4724 BF33_4740 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_4744 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_4744 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_4745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4749 SM00387 Histidine kinase-like ATPases BF33_4749 SM00388 His Kinase A (phosphoacceptor) domain BF33_4750 SM00448 cheY-homologous receiver domain BF33_4750 SM00862 Transcriptional regulatory protein, C terminal BF33_4755 SM00530 Helix-turn-helix XRE-family like proteins BF33_477 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF33_4770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF33_4770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4779 SM00849 Metallo-beta-lactamase superfamily BF33_478 SM00851 MGS-like domain BF33_478 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF33_478 SM01209 BF33_478 BF33_4781 SM00530 Helix-turn-helix XRE-family like proteins BF33_4797 SM00493 BF33_4797 BF33_4800 SM00382 ATPases associated with a variety of cellular activities BF33_4800 SM00930 BF33_4800 BF33_4804 SM00382 ATPases associated with a variety of cellular activities BF33_481 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF33_4813 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_4815 SM00855 Phosphoglycerate mutase family BF33_4818 SM00422 helix_turn_helix, mercury resistance BF33_4825 SM00420 helix_turn_helix, Deoxyribose operon repressor BF33_4840 SM00382 ATPases associated with a variety of cellular activities BF33_4849 SM00871 Bacterial transcription activator, effector binding domain BF33_4867 SM00479 BF33_4867 BF33_4868 SM01298 BF33_4868 BF33_4875 SM00344 helix_turn_helix ASNC type BF33_4877 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_49 SM00116 Domain in cystathionine beta-synthase and other proteins. BF33_490 SM00831 Cation transporter/ATPase, N-terminus BF33_4913 SM00642 Alpha-amylase domain BF33_4921 SM00357 Cold shock protein domain BF33_4929 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF33_493 SM00072 Guanylate kinase homologues. BF33_4930 SM00448 cheY-homologous receiver domain BF33_4930 SM00862 Transcriptional regulatory protein, C terminal BF33_4931 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4931 SM00387 Histidine kinase-like ATPases BF33_4931 SM00388 His Kinase A (phosphoacceptor) domain BF33_4939 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_4939 SM00866 BF33_4939 BF33_494 SM01409 BF33_494 BF33_4944 SM00382 ATPases associated with a variety of cellular activities BF33_4947 SM00387 Histidine kinase-like ATPases BF33_4948 SM00448 cheY-homologous receiver domain BF33_4948 SM00862 Transcriptional regulatory protein, C terminal BF33_4949 SM00342 helix_turn_helix, arabinose operon control protein BF33_4949 SM00871 Bacterial transcription activator, effector binding domain BF33_4950 SM00382 ATPases associated with a variety of cellular activities BF33_4958 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF33_496 SM00487 DEAD-like helicases superfamily BF33_496 SM00490 helicase superfamily c-terminal domain BF33_4964 SM00448 cheY-homologous receiver domain BF33_4964 SM00862 Transcriptional regulatory protein, C terminal BF33_4965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_4965 SM00387 Histidine kinase-like ATPases BF33_4965 SM00388 His Kinase A (phosphoacceptor) domain BF33_4967 SM00899 BF33_4967 BF33_4980 SM00894 Excalibur calcium-binding domain BF33_4984 SM01234 BF33_4984 BF33_4985 SM00947 Carbonic anhydrase BF33_4997 SM00382 ATPases associated with a variety of cellular activities BF33_5003 SM00387 Histidine kinase-like ATPases BF33_5003 SM00388 His Kinase A (phosphoacceptor) domain BF33_5004 SM00387 Histidine kinase-like ATPases BF33_501 SM00331 Sigma factor PP2C-like phosphatases BF33_501 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF33_5015 SM00852 Probable molybdopterin binding domain BF33_5018 SM00014 Acid phosphatase homologues BF33_502 SM00220 Serine/Threonine protein kinases, catalytic domain BF33_502 SM00740 BF33_502 BF33_5026 SM00382 ATPases associated with a variety of cellular activities BF33_5028 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_5032 SM00382 ATPases associated with a variety of cellular activities BF33_5047 SM00450 Rhodanese Homology Domain BF33_505 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF33_5051 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_5054 SM00852 Probable molybdopterin binding domain BF33_5061 SM01058 CarD-like/TRCF domain BF33_5066 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_5070 SM00363 S4 RNA-binding domain BF33_5071 SM00420 helix_turn_helix, Deoxyribose operon repressor BF33_5074 SM00642 Alpha-amylase domain BF33_5078 SM00849 Metallo-beta-lactamase superfamily BF33_508 SM01120 BF33_508 BF33_508 SM01121 BF33_508 BF33_5086 SM00843 BF33_5086 BF33_509 SM00487 DEAD-like helicases superfamily BF33_509 SM00490 helicase superfamily c-terminal domain BF33_5097 SM00354 helix_turn _helix lactose operon repressor BF33_51 SM00400 zinc finger BF33_51 SM00493 BF33_51 BF33_51 SM00766 DNA primase DnaG DnaB-binding BF33_5104 SM00248 ankyrin repeats BF33_5105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_5105 SM00387 Histidine kinase-like ATPases BF33_5105 SM00388 His Kinase A (phosphoacceptor) domain BF33_5106 SM00448 cheY-homologous receiver domain BF33_5106 SM00862 Transcriptional regulatory protein, C terminal BF33_5110 SM00116 Domain in cystathionine beta-synthase and other proteins. BF33_5116 SM00363 S4 RNA-binding domain BF33_5119 SM00363 S4 RNA-binding domain BF33_5119 SM01390 BF33_5119 BF33_512 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF33_5127 SM00981 BF33_5127 BF33_513 SM00822 BF33_513 BF33_515 SM00358 Double-stranded RNA binding motif BF33_515 SM00535 Ribonuclease III family BF33_5152 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF33_5152 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF33_5154 SM00530 Helix-turn-helix XRE-family like proteins BF33_516 SM00968 SMC proteins Flexible Hinge Domain BF33_5166 SM00849 Metallo-beta-lactamase superfamily BF33_5168 SM00116 Domain in cystathionine beta-synthase and other proteins. BF33_517 SM00382 ATPases associated with a variety of cellular activities BF33_517 SM00962 SRP54-type protein, GTPase domain BF33_517 SM00963 SRP54-type protein, helical bundle domain BF33_5175 SM00481 DNA polymerase alpha chain like domain BF33_5176 SM00919 Malic enzyme, NAD binding domain BF33_5176 SM01274 BF33_5176 BF33_5177 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_5186 SM01329 BF33_5186 BF33_519 SM00382 ATPases associated with a variety of cellular activities BF33_519 SM00962 SRP54-type protein, GTPase domain BF33_519 SM00963 SRP54-type protein, helical bundle domain BF33_5191 SM00448 cheY-homologous receiver domain BF33_5191 SM00862 Transcriptional regulatory protein, C terminal BF33_5192 SM00091 PAS domain BF33_5192 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_5192 SM00387 Histidine kinase-like ATPases BF33_5192 SM00388 His Kinase A (phosphoacceptor) domain BF33_5193 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF33_5193 SM00474 3'-5' exonuclease BF33_5193 SM00475 5'-3' exonuclease BF33_5193 SM00482 DNA polymerase A domain BF33_5194 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF33_5194 SM01232 BF33_5194 BF33_5197 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF33_5201 SM00382 ATPases associated with a variety of cellular activities BF33_5203 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF33_5218 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF33_5220 SM00873 B3/4 domain BF33_5220 SM00874 tRNA synthetase B5 domain BF33_5220 SM00896 Ferredoxin-fold anticodon binding domain BF33_5228 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF33_5228 SM00481 DNA polymerase alpha chain like domain BF33_5228 SM00483 DNA polymerase X family BF33_5229 SM00463 Small MutS-related domain BF33_5229 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF33_5229 SM00534 ATPase domain of DNA mismatch repair MUTS family BF33_5231 SM00363 S4 RNA-binding domain BF33_5233 SM00725 NEAr Transporter domain BF33_5234 SM00725 NEAr Transporter domain BF33_5235 SM00725 NEAr Transporter domain BF33_5238 SM00382 ATPases associated with a variety of cellular activities BF33_5242 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF33_5245 SM00448 cheY-homologous receiver domain BF33_5245 SM00862 Transcriptional regulatory protein, C terminal BF33_5246 SM00387 Histidine kinase-like ATPases BF33_5246 SM00388 His Kinase A (phosphoacceptor) domain BF33_5247 SM00382 ATPases associated with a variety of cellular activities BF33_5259 SM00893 Electron transfer flavoprotein domain BF33_5260 SM00893 Electron transfer flavoprotein domain BF33_5262 SM00465 GIY-YIG type nucleases (URI domain) BF33_5272 SM00382 ATPases associated with a variety of cellular activities BF33_5277 SM00530 Helix-turn-helix XRE-family like proteins BF33_5280 SM00342 helix_turn_helix, arabinose operon control protein BF33_5280 SM00448 cheY-homologous receiver domain BF33_5282 SM00382 ATPases associated with a variety of cellular activities BF33_5283 SM00382 ATPases associated with a variety of cellular activities BF33_529 SM00881 CoA binding domain BF33_5291 SM00421 helix_turn_helix, Lux Regulon BF33_5294 SM00530 Helix-turn-helix XRE-family like proteins BF33_5297 SM00530 Helix-turn-helix XRE-family like proteins BF33_5299 SM00857 Resolvase, N terminal domain BF33_5300 SM00857 Resolvase, N terminal domain BF33_5304 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_5305 SM00226 Low molecular weight phosphatase family BF33_5307 SM00382 ATPases associated with a variety of cellular activities BF33_531 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF33_531 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF33_531 SM00493 BF33_531 BF33_5313 SM00857 Resolvase, N terminal domain BF33_5323 SM00909 Sporulation and spore germination BF33_5336 SM00382 ATPases associated with a variety of cellular activities BF33_5336 SM00994 ClpX C4-type zinc finger BF33_5336 SM01086 C-terminal, D2-small domain, of ClpB protein BF33_5337 SM00382 ATPases associated with a variety of cellular activities BF33_5338 SM00382 ATPases associated with a variety of cellular activities BF33_5338 SM00464 Found in ATP-dependent protease La (LON) BF33_5341 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_5346 SM01004 Delta-aminolevulinic acid dehydratase BF33_5348 SM00257 Lysin motif BF33_535 SM00382 ATPases associated with a variety of cellular activities BF33_535 SM01086 C-terminal, D2-small domain, of ClpB protein BF33_5366 SM01317 BF33_5366 BF33_5368 SM00448 cheY-homologous receiver domain BF33_5368 SM00862 Transcriptional regulatory protein, C terminal BF33_5369 SM00387 Histidine kinase-like ATPases BF33_5370 SM00382 ATPases associated with a variety of cellular activities BF33_5380 SM00257 Lysin motif BF33_5385 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF33_5386 SM00382 ATPases associated with a variety of cellular activities BF33_5390 SM01323 BF33_5390 BF33_5399 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_5399 SM00954 Region found in RelA / SpoT proteins BF33_5407 SM00382 ATPases associated with a variety of cellular activities BF33_5411 SM00028 Tetratricopeptide repeats BF33_5418 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF33_5420 SM00732 Likely ribonuclease with RNase H fold. BF33_5439 SM00382 ATPases associated with a variety of cellular activities BF33_544 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF33_5444 SM00530 Helix-turn-helix XRE-family like proteins BF33_5453 SM00855 Phosphoglycerate mutase family BF33_5458 SM00098 Alkaline phosphatase homologues BF33_546 SM00479 BF33_546 BF33_546 SM00481 DNA polymerase alpha chain like domain BF33_5461 SM00857 Resolvase, N terminal domain BF33_5475 SM00857 Resolvase, N terminal domain BF33_5477 SM00857 Resolvase, N terminal domain BF33_548 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_548 SM00322 K homology RNA-binding domain BF33_5480 SM00857 Resolvase, N terminal domain BF33_5481 SM00342 helix_turn_helix, arabinose operon control protein BF33_5481 SM00871 Bacterial transcription activator, effector binding domain BF33_5507 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_5536 SM00507 HNH nucleases BF33_555 SM00904 Riboflavin kinase BF33_5555 SM00507 HNH nucleases BF33_5558 SM00530 Helix-turn-helix XRE-family like proteins BF33_556 SM01387 BF33_556 BF33_5560 SM00480 DNA polymerase III beta subunit BF33_5567 SM00507 HNH nucleases BF33_557 SM00316 Ribosomal protein S1-like RNA-binding domain BF33_557 SM00322 K homology RNA-binding domain BF33_5582 SM00507 HNH nucleases BF33_5589 SM00382 ATPases associated with a variety of cellular activities BF33_5595 SM00245 tail specific protease BF33_5603 SM00487 DEAD-like helicases superfamily BF33_5603 SM00490 helicase superfamily c-terminal domain BF33_563 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF33_5640 SM00530 Helix-turn-helix XRE-family like proteins BF33_5647 SM00530 Helix-turn-helix XRE-family like proteins BF33_565 SM01130 BF33_565 BF33_5653 SM00382 ATPases associated with a variety of cellular activities BF33_5659 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF33_5659 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF33_5659 SM00493 BF33_5659 BF33_566 SM00849 Metallo-beta-lactamase superfamily BF33_5660 SM00327 von Willebrand factor (vWF) type A domain BF33_5661 SM00966 SpoVT / AbrB like domain BF33_5662 SM00860 SMI1 / KNR4 family BF33_5664 SM01126 BF33_5664 BF33_5672 SM00382 ATPases associated with a variety of cellular activities BF33_5674 SM00226 Low molecular weight phosphatase family BF33_5676 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_5682 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_5683 SM00028 Tetratricopeptide repeats BF33_5683 SM00530 Helix-turn-helix XRE-family like proteins BF33_5685 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_5686 SM01209 BF33_5686 BF33_5688 SM00347 helix_turn_helix multiple antibiotic resistance protein BF33_569 SM00382 ATPases associated with a variety of cellular activities BF33_569 SM00843 BF33_569 BF33_570 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_570 SM00866 BF33_570 BF33_5719 SM00470 ParB-like nuclease domain BF33_572 SM00382 ATPases associated with a variety of cellular activities BF33_5721 SM00287 Bacterial SH3 domain homologues BF33_5726 SM00062 Bacterial periplasmic substrate-binding proteins BF33_5726 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF33_5728 SM00382 ATPases associated with a variety of cellular activities BF33_5731 SM00448 cheY-homologous receiver domain BF33_5731 SM00862 Transcriptional regulatory protein, C terminal BF33_5732 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF33_5732 SM00387 Histidine kinase-like ATPases BF33_5732 SM00388 His Kinase A (phosphoacceptor) domain BF33_5739 SM00860 SMI1 / KNR4 family BF33_5747 SM00829 Enoylreductase BF33_5756 SM00382 ATPases associated with a variety of cellular activities BF33_58 SM00487 DEAD-like helicases superfamily BF33_58 SM00490 helicase superfamily c-terminal domain BF33_5806 SM00644 BF33_5806 BF33_5809 SM00465 GIY-YIG type nucleases (URI domain) BF33_5815 SM00422 helix_turn_helix, mercury resistance BF33_582 SM00852 Probable molybdopterin binding domain BF33_5821 SM00894 Excalibur calcium-binding domain BF33_5822 SM00530 Helix-turn-helix XRE-family like proteins BF33_5826 SM00530 Helix-turn-helix XRE-family like proteins BF33_5827 SM00530 Helix-turn-helix XRE-family like proteins BF33_5828 SM01040 BRO family, N-terminal domain BF33_583 SM00382 ATPases associated with a variety of cellular activities BF33_5836 SM00857 Resolvase, N terminal domain BF33_585 SM00322 K homology RNA-binding domain BF33_585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF33_59 SM00518 AP endonuclease family 2 BF33_591 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_594 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF33_594 SM00534 ATPase domain of DNA mismatch repair MUTS family BF33_595 SM00853 MutL C terminal dimerisation domain BF33_595 SM01340 BF33_595 BF33_601 SM00257 Lysin motif BF33_603 SM00148 Phospholipase C, catalytic domain (part); domain X BF33_607 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_612 SM00052 Putative diguanylate phosphodiesterase BF33_612 SM00091 PAS domain BF33_612 SM00267 diguanylate cyclase BF33_619 SM00478 endonuclease III BF33_62 SM00382 ATPases associated with a variety of cellular activities BF33_621 SM00342 helix_turn_helix, arabinose operon control protein BF33_626 SM00382 ATPases associated with a variety of cellular activities BF33_632 SM00411 bacterial (prokaryotic) histone like domain BF33_636 SM00636 BF33_636 BF33_642 SM00420 helix_turn_helix, Deoxyribose operon repressor BF33_642 SM01134 BF33_642 BF33_645 SM00287 Bacterial SH3 domain homologues BF33_651 SM00382 ATPases associated with a variety of cellular activities BF33_656 SM00422 helix_turn_helix, mercury resistance BF33_657 SM01230 BF33_657 BF33_667 SM00857 Resolvase, N terminal domain BF33_670 SM00062 Bacterial periplasmic substrate-binding proteins BF33_671 SM00382 ATPases associated with a variety of cellular activities BF33_675 SM00861 Transketolase, pyrimidine binding domain BF33_678 SM00382 ATPases associated with a variety of cellular activities BF33_679 SM00382 ATPases associated with a variety of cellular activities BF33_682 SM00644 BF33_682 BF33_691 SM00382 ATPases associated with a variety of cellular activities BF33_709 SM01058 CarD-like/TRCF domain BF33_715 SM00091 PAS domain BF33_715 SM00387 Histidine kinase-like ATPases BF33_715 SM00388 His Kinase A (phosphoacceptor) domain BF33_718 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF33_719 SM00644 BF33_719 BF33_719 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF33_733 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF33_742 SM00382 ATPases associated with a variety of cellular activities BF33_745 SM00479 BF33_745 BF33_749 SM00257 Lysin motif BF33_749 SM00636 BF33_749 BF33_75 SM00382 ATPases associated with a variety of cellular activities BF33_752 SM01207 BF33_752 BF33_755 SM00448 cheY-homologous receiver domain BF33_755 SM00862 Transcriptional regulatory protein, C terminal BF33_756 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF33_757 SM00881 CoA binding domain BF33_758 SM00387 Histidine kinase-like ATPases BF33_758 SM00433 TopoisomeraseII BF33_759 SM00434 DNA Topoisomerase IV BF33_762 SM00382 ATPases associated with a variety of cellular activities BF33_786 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF33_786 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF33_790 SM00729 Elongator protein 3, MiaB family, Radical SAM BF33_793 SM00852 Probable molybdopterin binding domain BF33_813 SM01022 BF33_813 BF33_818 SM00357 Cold shock protein domain BF33_819 SM00479 BF33_819 BF33_829 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF33_83 SM00849 Metallo-beta-lactamase superfamily BF33_844 SM00028 Tetratricopeptide repeats BF33_846 SM00829 Enoylreductase BF33_847 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_85 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_860 SM00642 Alpha-amylase domain BF33_862 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF33_862 SM00534 ATPase domain of DNA mismatch repair MUTS family BF33_864 SM00855 Phosphoglycerate mutase family BF33_865 SM00829 Enoylreductase BF33_889 SM00829 Enoylreductase BF33_890 SM00849 Metallo-beta-lactamase superfamily BF33_90 SM01018 B12 binding domain BF33_904 SM00849 Metallo-beta-lactamase superfamily BF33_910 SM00382 ATPases associated with a variety of cellular activities BF33_914 SM00871 Bacterial transcription activator, effector binding domain BF33_921 SM00636 BF33_921 BF33_922 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF33_934 SM00849 Metallo-beta-lactamase superfamily BF33_941 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF33_941 SM00866 BF33_941 BF33_946 SM00914 BF33_946 BF33_954 SM01276 BF33_954 BF33_958 SM00829 Enoylreductase BF33_962 SM00861 Transketolase, pyrimidine binding domain BF33_963 SM01350 BF33_963 BF33_971 SM00422 helix_turn_helix, mercury resistance BF33_972 SM01091 Transporter associated domain BF33_977 SM00028 Tetratricopeptide repeats BF33_988 SM00382 ATPases associated with a variety of cellular activities BF33_990 SM01266 BF33_990