locus-tag class description DB29_00004 PF00561 alpha/beta hydrolase fold DB29_00005 PF13344 Haloacid dehalogenase-like hydrolase DB29_00005 PF00293 NUDIX domain DB29_00007 PF08281 Sigma-70, region 4 DB29_00007 PF04542 Sigma-70 region 2 DB29_00009 PF13732 Domain of unknown function (DUF4162) DB29_00009 PF00005 ABC transporter DB29_00013 PF07690 Major Facilitator Superfamily DB29_00016 PF10400 Virulence activator alpha C-term DB29_00016 PF03551 Transcriptional regulator PadR-like family DB29_00017 PF06445 GyrI-like small molecule binding domain DB29_00017 PF12833 Helix-turn-helix domain DB29_00018 PF00209 Sodium:neurotransmitter symporter family DB29_00020 PF01883 Iron-sulfur cluster assembly protein DB29_00022 PF00892 EamA-like transporter family DB29_00024 PF01709 Transcriptional regulator DB29_00026 PF03372 Endonuclease/Exonuclease/phosphatase family DB29_00027 PF00291 Pyridoxal-phosphate dependent enzyme DB29_00029 PF01261 Xylose isomerase-like TIM barrel DB29_00031 PF00550 Phosphopantetheine attachment site DB29_00032 PF13193 AMP-binding enzyme C-terminal domain DB29_00032 PF00501 AMP-binding enzyme DB29_00033 PF04183 IucA / IucC family DB29_00033 PF06276 Ferric iron reductase FhuF-like transporter DB29_00034 PF06276 Ferric iron reductase FhuF-like transporter DB29_00034 PF04183 IucA / IucC family DB29_00035 PF03992 Antibiotic biosynthesis monooxygenase DB29_00036 PF01053 Cys/Met metabolism PLP-dependent enzyme DB29_00037 PF00291 Pyridoxal-phosphate dependent enzyme DB29_00038 PF00296 Luciferase-like monooxygenase DB29_00040 PF14171 Toxin SpoIISA, type II toxin-antitoxin system DB29_00041 PF00296 Luciferase-like monooxygenase DB29_00042 PF17934 Tetracyclin repressor-like, C-terminal domain DB29_00042 PF00440 Bacterial regulatory proteins, tetR family DB29_00044 PF01476 LysM domain DB29_00044 PF00877 NlpC/P60 family DB29_00045 PF03641 Possible lysine decarboxylase DB29_00046 PF02245 Methylpurine-DNA glycosylase (MPG) DB29_00047 PF02361 Cobalt transport protein DB29_00048 PF00005 ABC transporter DB29_00051 PF01063 Amino-transferase class IV DB29_00053 PF16916 Dimerisation domain of Zinc Transporter DB29_00053 PF01545 Cation efflux family DB29_00054 PF06725 3D domain DB29_00054 PF03990 G5-linked-Ubiquitin-like domain DB29_00054 PF07501 G5 domain DB29_00055 PF01476 LysM domain DB29_00055 PF06725 3D domain DB29_00056 PF08241 Methyltransferase domain DB29_00057 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DB29_00057 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DB29_00059 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DB29_00059 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DB29_00062 PF13673 Acetyltransferase (GNAT) domain DB29_00065 PF01139 tRNA-splicing ligase RtcB DB29_00067 PF02142 MGS-like domain DB29_00068 PF01113 Dihydrodipicolinate reductase, N-terminus DB29_00068 PF05173 Dihydrodipicolinate reductase, C-terminus DB29_00069 PF03819 MazG nucleotide pyrophosphohydrolase domain DB29_00070 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DB29_00070 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DB29_00071 PF07690 Major Facilitator Superfamily DB29_00072 PF04298 Putative neutral zinc metallopeptidase DB29_00073 PF09577 Sporulation protein YpjB (SpoYpjB) DB29_00074 PF07187 Protein of unknown function (DUF1405) DB29_00075 PF00032 Cytochrome b(C-terminal)/b6/petD DB29_00075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DB29_00076 PF00033 Cytochrome b/b6/petB DB29_00077 PF00355 Rieske [2Fe-2S] domain DB29_00079 PF08858 IDEAL domain DB29_00079 PF08864 UPF0302 domain DB29_00081 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DB29_00082 PF01842 ACT domain DB29_00082 PF02153 Prephenate dehydrogenase DB29_00083 PF00155 Aminotransferase class I and II DB29_00084 PF00290 Tryptophan synthase alpha chain DB29_00085 PF00291 Pyridoxal-phosphate dependent enzyme DB29_00086 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DB29_00087 PF00218 Indole-3-glycerol phosphate synthase DB29_00088 PF02885 Glycosyl transferase family, helical bundle domain DB29_00088 PF00591 Glycosyl transferase family, a/b domain DB29_00089 PF04715 Anthranilate synthase component I, N terminal region DB29_00089 PF00425 chorismate binding enzyme DB29_00090 PF07736 Chorismate mutase type I DB29_00091 PF01761 3-dehydroquinate synthase DB29_00092 PF01264 Chorismate synthase DB29_00093 PF03705 CheR methyltransferase, all-alpha domain DB29_00093 PF01739 CheR methyltransferase, SAM binding domain DB29_00095 PF00334 Nucleoside diphosphate kinase DB29_00096 PF00348 Polyprenyl synthetase DB29_00098 PF01040 UbiA prenyltransferase family DB29_00099 PF01209 ubiE/COQ5 methyltransferase family DB29_00100 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 DB29_00101 PF02081 Tryptophan RNA-binding attenuator protein DB29_00102 PF01227 GTP cyclohydrolase I DB29_00103 PF09547 Stage IV sporulation protein A (spore_IV_A) DB29_00107 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DB29_00107 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DB29_00108 PF02660 Glycerol-3-phosphate acyltransferase DB29_00109 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DB29_00109 PF01926 50S ribosome-binding GTPase DB29_00111 PF00575 S1 RNA binding domain DB29_00112 PF01553 Acyltransferase DB29_00113 PF02224 Cytidylate kinase DB29_00114 PF14620 YpeB sporulation DB29_00115 PF01471 Putative peptidoglycan binding domain DB29_00115 PF07486 Cell Wall Hydrolase DB29_00116 PF02965 Vitamin B12 dependent methionine synthase, activation domain DB29_00116 PF00809 Pterin binding enzyme DB29_00116 PF02310 B12 binding domain DB29_00116 PF02607 B12 binding domain DB29_00116 PF02574 Homocysteine S-methyltransferase DB29_00117 PF02574 Homocysteine S-methyltransferase DB29_00117 PF02219 Methylenetetrahydrofolate reductase DB29_00118 PF01053 Cys/Met metabolism PLP-dependent enzyme DB29_00120 PF13367 PrsW family intramembrane metalloprotease DB29_00121 PF17763 Glutaminase/Asparaginase C-terminal domain DB29_00121 PF00710 Asparaginase, N-terminal DB29_00123 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DB29_00123 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DB29_00125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00125 PF00672 HAMP domain DB29_00125 PF00512 His Kinase A (phospho-acceptor) domain DB29_00125 PF13426 PAS domain DB29_00126 PF00072 Response regulator receiver domain DB29_00126 PF00486 Transcriptional regulatory protein, C terminal DB29_00127 PF05389 Negative regulator of genetic competence (MecA) DB29_00128 PF13411 MerR HTH family regulatory protein DB29_00129 PF00149 Calcineurin-like phosphoesterase DB29_00130 PF01546 Peptidase family M20/M25/M40 DB29_00130 PF07687 Peptidase dimerisation domain DB29_00132 PF13439 Glycosyltransferase Family 4 DB29_00132 PF00534 Glycosyl transferases group 1 DB29_00133 PF00534 Glycosyl transferases group 1 DB29_00133 PF13439 Glycosyltransferase Family 4 DB29_00136 PF01381 Helix-turn-helix DB29_00139 PF02517 CPBP intramembrane metalloprotease DB29_00140 PF00271 Helicase conserved C-terminal domain DB29_00140 PF00270 DEAD/DEAH box helicase DB29_00141 PF14493 Helix-turn-helix domain DB29_00144 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DB29_00144 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DB29_00144 PF01842 ACT domain DB29_00146 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DB29_00146 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_00148 PF03741 Integral membrane protein TerC family DB29_00151 PF00005 ABC transporter DB29_00152 PF01032 FecCD transport family DB29_00154 PF00989 PAS fold DB29_00154 PF00512 His Kinase A (phospho-acceptor) domain DB29_00154 PF00672 HAMP domain DB29_00154 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00154 PF18698 Histidine kinase sensor domain DB29_00155 PF00486 Transcriptional regulatory protein, C terminal DB29_00155 PF00072 Response regulator receiver domain DB29_00156 PF01578 Cytochrome C assembly protein DB29_00157 PF05140 ResB-like family DB29_00158 PF08534 Redoxin DB29_00159 PF00849 RNA pseudouridylate synthase DB29_00159 PF01479 S4 domain DB29_00160 PF07670 Nucleoside recognition DB29_00161 PF07670 Nucleoside recognition DB29_00162 PF00768 D-alanyl-D-alanine carboxypeptidase DB29_00162 PF07943 Penicillin-binding protein 5, C-terminal domain DB29_00163 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DB29_00164 PF07451 Stage V sporulation protein AD (SpoVAD) DB29_00165 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DB29_00167 PF04239 Protein of unknown function (DUF421) DB29_00170 PF03109 ABC1 family DB29_00171 PF13091 PLD-like domain DB29_00171 PF13396 Phospholipase_D-nuclease N-terminal DB29_00172 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DB29_00172 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DB29_00173 PF00171 Aldehyde dehydrogenase family DB29_00175 PF04079 Segregation and condensation complex subunit ScpB DB29_00176 PF02616 Segregation and condensation protein ScpA DB29_00177 PF03745 Domain of unknown function (DUF309) DB29_00178 PF00885 6,7-dimethyl-8-ribityllumazine synthase DB29_00179 PF00925 GTP cyclohydrolase II DB29_00179 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DB29_00180 PF00677 Lumazine binding domain DB29_00183 PF00378 Enoyl-CoA hydratase/isomerase DB29_00184 PF00171 Aldehyde dehydrogenase family DB29_00185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DB29_00185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DB29_00187 PF03972 MmgE/PrpD family DB29_00188 PF00285 Citrate synthase, C-terminal domain DB29_00191 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_00191 PF03466 LysR substrate binding domain DB29_00192 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DB29_00194 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DB29_00194 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DB29_00195 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_00196 PF14097 Stage V sporulation protein AE1 DB29_00197 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DB29_00198 PF07451 Stage V sporulation protein AD (SpoVAD) DB29_00199 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DB29_00200 PF04545 Sigma-70, region 4 DB29_00200 PF04539 Sigma-70 region 3 DB29_00200 PF04542 Sigma-70 region 2 DB29_00201 PF13581 Histidine kinase-like ATPase domain DB29_00202 PF01740 STAS domain DB29_00203 PF00768 D-alanyl-D-alanine carboxypeptidase DB29_00203 PF07943 Penicillin-binding protein 5, C-terminal domain DB29_00204 PF01522 Polysaccharide deacetylase DB29_00204 PF13739 Deacetylase PdaC DB29_00204 PF11738 Protein of unknown function (DUF3298) DB29_00205 PF04307 LexA-binding, inner membrane-associated putative hydrolase DB29_00208 PF07690 Major Facilitator Superfamily DB29_00210 PF02566 OsmC-like protein DB29_00211 PF02885 Glycosyl transferase family, helical bundle domain DB29_00211 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DB29_00211 PF00591 Glycosyl transferase family, a/b domain DB29_00212 PF01676 Metalloenzyme superfamily DB29_00213 PF02899 Phage integrase, N-terminal SAM-like domain DB29_00213 PF00589 Phage integrase family DB29_00214 PF14004 Protein of unknown function (DUF4227) DB29_00215 PF01475 Ferric uptake regulator family DB29_00216 PF01944 Stage II sporulation protein M DB29_00217 PF00293 NUDIX domain DB29_00219 PF00578 AhpC/TSA family DB29_00220 PF02673 Bacitracin resistance protein BacA DB29_00221 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain DB29_00223 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DB29_00225 PF12802 MarR family DB29_00229 PF13537 Glutamine amidotransferase domain DB29_00229 PF00733 Asparagine synthase DB29_00230 PF01472 PUA domain DB29_00230 PF00696 Amino acid kinase family DB29_00231 PF00171 Aldehyde dehydrogenase family DB29_00232 PF14748 Pyrroline-5-carboxylate reductase dimerisation DB29_00232 PF03807 NADP oxidoreductase coenzyme F420-dependent DB29_00234 PF13840 ACT domain DB29_00234 PF00696 Amino acid kinase family DB29_00237 PF13411 MerR HTH family regulatory protein DB29_00238 PF04748 Divergent polysaccharide deacetylase DB29_00239 PF00082 Subtilase family DB29_00245 PF03885 Protein of unknown function (DUF327) DB29_00247 PF07687 Peptidase dimerisation domain DB29_00247 PF01546 Peptidase family M20/M25/M40 DB29_00249 PF03734 L,D-transpeptidase catalytic domain DB29_00250 PF11728 Putative aromatic acid exporter C-terminal domain DB29_00250 PF06081 Aromatic acid exporter family member 1 DB29_00251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00251 PF00512 His Kinase A (phospho-acceptor) domain DB29_00251 PF00989 PAS fold DB29_00251 PF08447 PAS fold DB29_00253 PF01625 Peptide methionine sulfoxide reductase DB29_00254 PF01641 SelR domain DB29_00255 PF10415 Fumarase C C-terminus DB29_00255 PF00206 Lyase DB29_00256 PF08671 Anti-repressor SinI DB29_00256 PF01381 Helix-turn-helix DB29_00257 PF01381 Helix-turn-helix DB29_00259 PF00756 Putative esterase DB29_00261 PF13673 Acetyltransferase (GNAT) domain DB29_00262 PF01910 Thiamine-binding protein DB29_00264 PF08543 Phosphomethylpyrimidine kinase DB29_00264 PF02581 Thiamine monophosphate synthase DB29_00265 PF01266 FAD dependent oxidoreductase DB29_00266 PF05690 Thiazole biosynthesis protein ThiG DB29_00268 PF02581 Thiamine monophosphate synthase DB29_00269 PF00206 Lyase DB29_00269 PF10415 Fumarase C C-terminus DB29_00270 PF00480 ROK family DB29_00274 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_00275 PF01694 Rhomboid family DB29_00278 PF00899 ThiF family DB29_00280 PF01812 5-formyltetrahydrofolate cyclo-ligase family DB29_00281 PF00471 Ribosomal protein L33 DB29_00287 PF07690 Major Facilitator Superfamily DB29_00288 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DB29_00288 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DB29_00289 PF01895 PhoU domain DB29_00292 PF06207 Protein of unknown function (DUF1002) DB29_00293 PF07690 Major Facilitator Superfamily DB29_00295 PF04551 GcpE protein DB29_00299 PF01475 Ferric uptake regulator family DB29_00300 PF00950 ABC 3 transport family DB29_00301 PF00005 ABC transporter DB29_00303 PF13426 PAS domain DB29_00303 PF13188 PAS domain DB29_00303 PF00989 PAS fold DB29_00303 PF00512 His Kinase A (phospho-acceptor) domain DB29_00303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00305 PF01261 Xylose isomerase-like TIM barrel DB29_00306 PF00270 DEAD/DEAH box helicase DB29_00306 PF00271 Helicase conserved C-terminal domain DB29_00308 PF02559 CarD-like/TRCF domain DB29_00309 PF02401 LytB protein DB29_00310 PF01784 NIF3 (NGG1p interacting factor 3) DB29_00311 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DB29_00312 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DB29_00313 PF03979 Sigma-70 factor, region 1.1 DB29_00313 PF04545 Sigma-70, region 4 DB29_00313 PF04539 Sigma-70 region 3 DB29_00313 PF04542 Sigma-70 region 2 DB29_00313 PF00140 Sigma-70 factor, region 1.2 DB29_00314 PF08275 DNA primase catalytic core, N-terminal domain DB29_00314 PF10410 DnaB-helicase binding domain of primase DB29_00314 PF01807 CHC2 zinc finger DB29_00315 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DB29_00317 PF03618 Kinase/pyrophosphorylase DB29_00318 PF00571 CBS domain DB29_00318 PF08279 HTH domain DB29_00319 PF02092 Glycyl-tRNA synthetase beta subunit DB29_00319 PF05746 DALR anticodon binding domain DB29_00320 PF02091 Glycyl-tRNA synthetase alpha subunit DB29_00322 PF02565 Recombination protein O C terminal DB29_00322 PF11967 Recombination protein O N terminal DB29_00323 PF14006 YqzL-like protein DB29_00324 PF07650 KH domain DB29_00324 PF01926 50S ribosome-binding GTPase DB29_00325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DB29_00326 PF01219 Prokaryotic diacylglycerol kinase DB29_00327 PF02130 Uncharacterized protein family UPF0054 DB29_00328 PF07697 7TM-HD extracellular DB29_00328 PF01966 HD domain DB29_00328 PF07698 7TM receptor with intracellular HD hydrolase DB29_00329 PF02562 PhoH-like protein DB29_00330 PF06898 Putative stage IV sporulation protein YqfD DB29_00331 PF07873 YabP family DB29_00333 PF12127 SigmaW regulon antibacterial DB29_00334 PF01972 Serine dehydrogenase proteinase DB29_00334 PF01957 NfeD-like C-terminal, partner-binding DB29_00335 PF09424 Yqey-like protein DB29_00336 PF01165 Ribosomal protein S21 DB29_00337 PF02690 Na+/Pi-cotransporter DB29_00339 PF00248 Aldo/keto reductase family DB29_00340 PF01791 DeoC/LacD family aldolase DB29_00342 PF00375 Sodium:dicarboxylate symporter family DB29_00343 PF01209 ubiE/COQ5 methyltransferase family DB29_00344 PF00919 Uncharacterized protein family UPF0004 DB29_00344 PF01938 TRAM domain DB29_00344 PF04055 Radical SAM superfamily DB29_00345 PF04452 RNA methyltransferase DB29_00347 PF01556 DnaJ C terminal domain DB29_00347 PF00226 DnaJ domain DB29_00347 PF00684 DnaJ central domain DB29_00348 PF00012 Hsp70 protein DB29_00349 PF01025 GrpE DB29_00350 PF01628 HrcA protein C terminal domain DB29_00350 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DB29_00351 PF06969 HemN C-terminal domain DB29_00351 PF04055 Radical SAM superfamily DB29_00352 PF03144 Elongation factor Tu domain 2 DB29_00352 PF06421 GTP-binding protein LepA C-terminus DB29_00352 PF00009 Elongation factor Tu GTP binding domain DB29_00352 PF00679 Elongation factor G C-terminus DB29_00354 PF07454 Stage II sporulation protein P (SpoIIP) DB29_00355 PF03418 Germination protease DB29_00356 PF01649 Ribosomal protein S20 DB29_00357 PF06144 DNA polymerase III, delta subunit DB29_00359 PF13567 Domain of unknown function (DUF4131) DB29_00359 PF03772 Competence protein DB29_00359 PF00753 Metallo-beta-lactamase superfamily DB29_00360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DB29_00361 PF10531 SLBB domain DB29_00362 PF14748 Pyrroline-5-carboxylate reductase dimerisation DB29_00362 PF03807 NADP oxidoreductase coenzyme F420-dependent DB29_00363 PF13649 Methyltransferase domain DB29_00364 PF17783 CvfB-like winged helix domain DB29_00364 PF13509 S1 domain DB29_00366 PF01966 HD domain DB29_00367 PF01467 Cytidylyltransferase-like DB29_00368 PF01985 CRS1 / YhbY (CRM) domain DB29_00369 PF01488 Shikimate / quinate 5-dehydrogenase DB29_00369 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DB29_00369 PF08501 Shikimate dehydrogenase substrate binding domain DB29_00370 PF01926 50S ribosome-binding GTPase DB29_00372 PF08970 Sporulation inhibitor A DB29_00380 PF00216 Bacterial DNA-binding protein DB29_00381 PF08543 Phosphomethylpyrimidine kinase DB29_00383 PF02028 BCCT, betaine/carnitine/choline family transporter DB29_00384 PF07690 Major Facilitator Superfamily DB29_00385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DB29_00385 PF00384 Molybdopterin oxidoreductase DB29_00385 PF01568 Molydopterin dinucleotide binding domain DB29_00386 PF04324 BFD-like [2Fe-2S] binding domain DB29_00386 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DB29_00386 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DB29_00386 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_00386 PF18267 Rubredoxin NAD+ reductase C-terminal domain DB29_00387 PF00355 Rieske [2Fe-2S] domain DB29_00388 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DB29_00388 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DB29_00388 PF04324 BFD-like [2Fe-2S] binding domain DB29_00388 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_00388 PF18267 Rubredoxin NAD+ reductase C-terminal domain DB29_00389 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DB29_00390 PF01797 Transposase IS200 like DB29_00394 PF04542 Sigma-70 region 2 DB29_00394 PF04545 Sigma-70, region 4 DB29_00395 PF01758 Sodium Bile acid symporter family DB29_00397 PF03606 C4-dicarboxylate anaerobic carrier DB29_00398 PF03099 Biotin/lipoate A/B protein ligase family DB29_00398 PF10437 Bacterial lipoate protein ligase C-terminus DB29_00400 PF03946 Ribosomal protein L11, N-terminal domain DB29_00400 PF00298 Ribosomal protein L11, RNA binding domain DB29_00401 PF00128 Alpha amylase, catalytic domain DB29_00405 PF00440 Bacterial regulatory proteins, tetR family DB29_00405 PF08359 YsiA-like protein, C-terminal region DB29_00406 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00407 PF12911 N-terminal TM domain of oligopeptide transport permease C DB29_00407 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00408 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_00408 PF00005 ABC transporter DB29_00409 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_00409 PF00005 ABC transporter DB29_00410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_00413 PF01048 Phosphorylase superfamily DB29_00414 PF02735 Ku70/Ku80 beta-barrel domain DB29_00415 PF01068 ATP dependent DNA ligase domain DB29_00417 PF03449 Transcription elongation factor, N-terminal DB29_00417 PF01272 Transcription elongation factor, GreA/GreB, C-term DB29_00418 PF00485 Phosphoribulokinase / Uridine kinase family DB29_00420 PF02618 YceG-like family DB29_00421 PF06949 Protein of unknown function (DUF1292) DB29_00422 PF03652 Holliday junction resolvase DB29_00423 PF06135 IreB regulatory phosphoprotein DB29_00424 PF01411 tRNA synthetases class II (A) DB29_00424 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DB29_00424 PF02272 DHHA1 domain DB29_00426 PF01594 AI-2E family transporter DB29_00429 PF05239 PRC-barrel domain DB29_00430 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DB29_00430 PF14490 Helix-hairpin-helix containing domain DB29_00430 PF13538 UvrD-like helicase C-terminal domain DB29_00433 PF00266 Aminotransferase class-V DB29_00434 PF02082 Transcriptional regulator DB29_00435 PF12002 MgsA AAA+ ATPase C terminal DB29_00435 PF05496 Holliday junction DNA helicase RuvB P-loop domain DB29_00435 PF16193 AAA C-terminal domain DB29_00437 PF00899 ThiF family DB29_00438 PF01717 Cobalamin-independent synthase, Catalytic domain DB29_00440 PF00742 Homoserine dehydrogenase DB29_00440 PF03447 Homoserine dehydrogenase, NAD binding domain DB29_00441 PF00152 tRNA synthetases class II (D, K and N) DB29_00441 PF02938 GAD domain DB29_00441 PF01336 OB-fold nucleic acid binding domain DB29_00442 PF03129 Anticodon binding domain DB29_00442 PF13393 Histidyl-tRNA synthetase DB29_00444 PF00144 Beta-lactamase DB29_00445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_00445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_00447 PF00356 Bacterial regulatory proteins, lacI family DB29_00448 PF02580 D-Tyr-tRNA(Tyr) deacylase DB29_00449 PF04607 Region found in RelA / SpoT proteins DB29_00449 PF13291 ACT domain DB29_00449 PF02824 TGS domain DB29_00450 PF00156 Phosphoribosyl transferase domain DB29_00451 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DB29_00451 PF01368 DHH family DB29_00451 PF17768 RecJ OB domain DB29_00451 PF02272 DHHA1 domain DB29_00452 PF06305 Lipopolysaccharide assembly protein A domain DB29_00453 PF07549 SecD/SecF GG Motif DB29_00453 PF02355 Protein export membrane protein DB29_00454 PF07549 SecD/SecF GG Motif DB29_00454 PF02355 Protein export membrane protein DB29_00456 PF14667 Polysaccharide biosynthesis C-terminal domain DB29_00456 PF01943 Polysaccharide biosynthesis protein DB29_00459 PF12670 Protein of unknown function (DUF3792) DB29_00460 PF02699 Preprotein translocase subunit DB29_00461 PF01702 Queuine tRNA-ribosyltransferase DB29_00462 PF02547 Queuosine biosynthesis protein DB29_00463 PF11146 Protein of unknown function (DUF2905) DB29_00464 PF05496 Holliday junction DNA helicase RuvB P-loop domain DB29_00464 PF05491 RuvB C-terminal winged helix domain DB29_00464 PF17864 RuvB AAA lid domain DB29_00465 PF01330 RuvA N terminal domain DB29_00465 PF07499 RuvA, C-terminal domain DB29_00466 PF08977 Bypass of Forespore C, N terminal DB29_00466 PF08955 BofC C-terminal domain DB29_00469 PF01476 LysM domain DB29_00470 PF02445 Quinolinate synthetase A protein DB29_00471 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DB29_00471 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DB29_00472 PF00890 FAD binding domain DB29_00472 PF02910 Fumarate reductase flavoprotein C-term DB29_00473 PF00266 Aminotransferase class-V DB29_00475 PF02829 3H domain DB29_00475 PF08279 HTH domain DB29_00476 PF01842 ACT domain DB29_00476 PF00800 Prephenate dehydratase DB29_00477 PF01842 ACT domain DB29_00478 PF01018 GTP1/OBG DB29_00478 PF09269 Domain of unknown function (DUF1967) DB29_00478 PF01926 50S ribosome-binding GTPase DB29_00479 PF14682 Sporulation initiation phospho-transferase B, C-terminal DB29_00479 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DB29_00484 PF01208 Uroporphyrinogen decarboxylase (URO-D) DB29_00485 PF00905 Penicillin binding protein transpeptidase domain DB29_00485 PF00912 Transglycosylase DB29_00486 PF02683 Cytochrome C biogenesis protein transmembrane region DB29_00487 PF12787 EcsC protein family DB29_00488 PF05975 Bacterial ABC transporter protein EcsB DB29_00489 PF00005 ABC transporter DB29_00490 PF01230 HIT domain DB29_00491 PF00266 Aminotransferase class-V DB29_00493 PF01047 MarR family DB29_00496 PF09680 Family of unknown function DB29_00500 PF01966 HD domain DB29_00501 PF00512 His Kinase A (phospho-acceptor) domain DB29_00501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00501 PF00672 HAMP domain DB29_00502 PF00072 Response regulator receiver domain DB29_00502 PF00486 Transcriptional regulatory protein, C terminal DB29_00506 PF06133 Control of competence regulator ComK, YlbF/YmcA DB29_00507 PF04286 Protein of unknown function (DUF445) DB29_00510 PF13556 PucR C-terminal helix-turn-helix domain DB29_00511 PF03459 TOBE domain DB29_00511 PF00005 ABC transporter DB29_00511 PF17912 MalK OB fold domain DB29_00515 PF01039 Carboxyl transferase domain DB29_00516 PF00378 Enoyl-CoA hydratase/isomerase DB29_00517 PF00364 Biotin-requiring enzyme DB29_00518 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DB29_00518 PF00289 Biotin carboxylase, N-terminal domain DB29_00518 PF02785 Biotin carboxylase C-terminal domain DB29_00519 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DB29_00519 PF02770 Acyl-CoA dehydrogenase, middle domain DB29_00519 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DB29_00520 PF04011 LemA family DB29_00521 PF01435 Peptidase family M48 DB29_00522 PF00155 Aminotransferase class I and II DB29_00523 PF00664 ABC transporter transmembrane region DB29_00523 PF00005 ABC transporter DB29_00524 PF00005 ABC transporter DB29_00524 PF00664 ABC transporter transmembrane region DB29_00525 PF04293 SpoVR like protein DB29_00526 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DB29_00526 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DB29_00526 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DB29_00526 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DB29_00527 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DB29_00527 PF01266 FAD dependent oxidoreductase DB29_00528 PF17746 SfsA N-terminal OB domain DB29_00528 PF03749 Sugar fermentation stimulation protein RE domain DB29_00529 PF00795 Carbon-nitrogen hydrolase DB29_00529 PF00583 Acetyltransferase (GNAT) family DB29_00532 PF03009 Glycerophosphoryl diester phosphodiesterase family DB29_00533 PF01557 Fumarylacetoacetate (FAA) hydrolase family DB29_00534 PF00155 Aminotransferase class I and II DB29_00535 PF00881 Nitroreductase family DB29_00537 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DB29_00538 PF01979 Amidohydrolase family DB29_00540 PF14698 Argininosuccinate lyase C-terminal DB29_00540 PF00206 Lyase DB29_00541 PF07702 UTRA domain DB29_00541 PF00392 Bacterial regulatory proteins, gntR family DB29_00547 PF01061 ABC-2 type transporter DB29_00548 PF13732 Domain of unknown function (DUF4162) DB29_00548 PF00005 ABC transporter DB29_00550 PF07690 Major Facilitator Superfamily DB29_00554 PF04285 Protein of unknown function (DUF444) DB29_00555 PF00005 ABC transporter DB29_00556 PF10502 Signal peptidase, peptidase S26 DB29_00557 PF06798 PrkA serine protein kinase C-terminal domain DB29_00557 PF08298 PrkA AAA domain DB29_00558 PF00905 Penicillin binding protein transpeptidase domain DB29_00558 PF00912 Transglycosylase DB29_00561 PF17328 Family of unknown function (DUF5366) DB29_00562 PF00588 SpoU rRNA Methylase family DB29_00563 PF12671 Putative amidase domain DB29_00566 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DB29_00566 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DB29_00567 PF08331 Domain of unknown function (DUF1730) DB29_00569 PF00210 Ferritin-like domain DB29_00570 PF05343 M42 glutamyl aminopeptidase DB29_00572 PF00005 ABC transporter DB29_00573 PF00392 Bacterial regulatory proteins, gntR family DB29_00575 PF00005 ABC transporter DB29_00577 PF02311 AraC-like ligand binding domain DB29_00577 PF12833 Helix-turn-helix domain DB29_00578 PF08244 Glycosyl hydrolases family 32 C terminal DB29_00578 PF00251 Glycosyl hydrolases family 32 N-terminal domain DB29_00579 PF01915 Glycosyl hydrolase family 3 C-terminal domain DB29_00579 PF00933 Glycosyl hydrolase family 3 N terminal domain DB29_00579 PF14310 Fibronectin type III-like domain DB29_00580 PF02378 Phosphotransferase system, EIIC DB29_00580 PF00367 phosphotransferase system, EIIB DB29_00582 PF00171 Aldehyde dehydrogenase family DB29_00584 PF02554 Carbon starvation protein CstA DB29_00584 PF13722 5TM C-terminal transporter carbon starvation CstA DB29_00585 PF01717 Cobalamin-independent synthase, Catalytic domain DB29_00585 PF08267 Cobalamin-independent synthase, N-terminal domain DB29_00586 PF00939 Sodium:sulfate symporter transmembrane region DB29_00587 PF02810 SEC-C motif DB29_00587 PF05225 helix-turn-helix, Psq domain DB29_00589 PF00149 Calcineurin-like phosphoesterase DB29_00589 PF02872 5'-nucleotidase, C-terminal domain DB29_00591 PF00156 Phosphoribosyl transferase domain DB29_00595 PF03009 Glycerophosphoryl diester phosphodiesterase family DB29_00597 PF04525 LURP-one-related DB29_00598 PF01501 Glycosyl transferase family 8 DB29_00598 PF08437 Glycosyl transferase family 8 C-terminal DB29_00601 PF00005 ABC transporter DB29_00602 PF00196 Bacterial regulatory proteins, luxR family DB29_00602 PF00072 Response regulator receiver domain DB29_00603 PF07730 Histidine kinase DB29_00605 PF02463 RecF/RecN/SMC N terminal domain DB29_00608 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DB29_00608 PF02403 Seryl-tRNA synthetase N-terminal domain DB29_00609 PF01638 HxlR-like helix-turn-helix DB29_00613 PF12146 Serine aminopeptidase, S33 DB29_00619 PF00248 Aldo/keto reductase family DB29_00621 PF07071 KDGP aldolase DB29_00622 PF03841 L-seryl-tRNA selenium transferase DB29_00628 PF01979 Amidohydrolase family DB29_00631 PF02449 Beta-galactosidase DB29_00631 PF08532 Beta-galactosidase trimerisation domain DB29_00631 PF08533 Beta-galactosidase C-terminal domain DB29_00638 PF01638 HxlR-like helix-turn-helix DB29_00639 PF00144 Beta-lactamase DB29_00639 PF11954 Domain of unknown function (DUF3471) DB29_00640 PF07739 TipAS antibiotic-recognition domain DB29_00640 PF13411 MerR HTH family regulatory protein DB29_00643 PF07690 Major Facilitator Superfamily DB29_00644 PF02082 Transcriptional regulator DB29_00646 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DB29_00646 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_00648 PF06441 Epoxide hydrolase N terminus DB29_00650 PF01047 MarR family DB29_00652 PF01494 FAD binding domain DB29_00653 PF07690 Major Facilitator Superfamily DB29_00657 PF12708 Pectate lyase superfamily protein DB29_00657 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain DB29_00659 PF11023 Zinc-ribbon containing domain DB29_00660 PF01475 Ferric uptake regulator family DB29_00662 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DB29_00663 PF00578 AhpC/TSA family DB29_00664 PF00202 Aminotransferase class-III DB29_00665 PF06081 Aromatic acid exporter family member 1 DB29_00666 PF00005 ABC transporter DB29_00666 PF00664 ABC transporter transmembrane region DB29_00667 PF04167 Protein of unknown function (DUF402) DB29_00673 PF00633 Helix-hairpin-helix motif DB29_00673 PF00730 HhH-GPD superfamily base excision DNA repair protein DB29_00673 PF14815 NUDIX domain DB29_00674 PF04307 LexA-binding, inner membrane-associated putative hydrolase DB29_00675 PF08176 Small acid-soluble spore protein K family DB29_00677 PF08838 Protein of unknown function (DUF1811) DB29_00678 PF02631 RecX family DB29_00679 PF08338 Domain of unknown function (DUF1731) DB29_00679 PF01370 NAD dependent epimerase/dehydratase family DB29_00681 PF02016 LD-carboxypeptidase N-terminal domain DB29_00681 PF17676 LD-carboxypeptidase C-terminal domain DB29_00682 PF01938 TRAM domain DB29_00682 PF05958 tRNA (Uracil-5-)-methyltransferase DB29_00686 PF13932 GidA associated domain DB29_00686 PF01134 Glucose inhibited division protein A DB29_00687 PF01522 Polysaccharide deacetylase DB29_00689 PF03471 Transporter associated domain DB29_00689 PF01595 Cyclin M transmembrane N-terminal domain DB29_00689 PF00571 CBS domain DB29_00690 PF00300 Histidine phosphatase superfamily (branch 1) DB29_00691 PF08756 YfkB-like domain DB29_00691 PF04055 Radical SAM superfamily DB29_00692 PF14167 YfkD-like protein DB29_00696 PF01654 Cytochrome bd terminal oxidase subunit I DB29_00697 PF02322 Cytochrome bd terminal oxidase subunit II DB29_00699 PF01432 Peptidase family M3 DB29_00699 PF08439 Oligopeptidase F DB29_00701 PF06628 Catalase-related immune-responsive DB29_00701 PF00199 Catalase DB29_00702 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DB29_00703 PF00171 Aldehyde dehydrogenase family DB29_00704 PF01693 Caulimovirus viroplasmin DB29_00707 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DB29_00707 PF18277 AbrB C-terminal domain DB29_00709 PF00209 Sodium:neurotransmitter symporter family DB29_00712 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_00712 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_00713 PF00294 pfkB family carbohydrate kinase DB29_00714 PF08220 DeoR-like helix-turn-helix domain DB29_00714 PF00455 DeoR C terminal sensor domain DB29_00715 PF00005 ABC transporter DB29_00715 PF12848 ABC transporter DB29_00715 PF16326 ABC transporter C-terminal domain DB29_00716 PF02898 Nitric oxide synthase, oxygenase domain DB29_00717 PF00255 Glutathione peroxidase DB29_00718 PF07702 UTRA domain DB29_00718 PF00392 Bacterial regulatory proteins, gntR family DB29_00719 PF00128 Alpha amylase, catalytic domain DB29_00719 PF16657 Maltogenic Amylase, C-terminal domain DB29_00720 PF02378 Phosphotransferase system, EIIC DB29_00720 PF00367 phosphotransferase system, EIIB DB29_00722 PF02638 Glycosyl hydrolase-like 10 DB29_00723 PF01943 Polysaccharide biosynthesis protein DB29_00724 PF01235 Sodium:alanine symporter family DB29_00725 PF04309 Glycerol-3-phosphate responsive antiterminator DB29_00726 PF01266 FAD dependent oxidoreductase DB29_00726 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DB29_00727 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DB29_00727 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DB29_00728 PF00512 His Kinase A (phospho-acceptor) domain DB29_00728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00729 PF00005 ABC transporter DB29_00729 PF00664 ABC transporter transmembrane region DB29_00730 PF00005 ABC transporter DB29_00730 PF00664 ABC transporter transmembrane region DB29_00731 PF13538 UvrD-like helicase C-terminal domain DB29_00734 PF00005 ABC transporter DB29_00735 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00736 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00737 PF14748 Pyrroline-5-carboxylate reductase dimerisation DB29_00737 PF03807 NADP oxidoreductase coenzyme F420-dependent DB29_00744 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_00745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_00745 PF00005 ABC transporter DB29_00746 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_00746 PF00005 ABC transporter DB29_00749 PF13302 Acetyltransferase (GNAT) domain DB29_00750 PF04143 Sulphur transport DB29_00752 PF02653 Branched-chain amino acid transport system / permease component DB29_00753 PF09383 NIL domain DB29_00753 PF00005 ABC transporter DB29_00755 PF12857 TOBE-like domain DB29_00755 PF17850 CysA C-terminal regulatory domain DB29_00755 PF00005 ABC transporter DB29_00756 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00757 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00760 PF04073 Aminoacyl-tRNA editing domain DB29_00761 PF13426 PAS domain DB29_00761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00761 PF00512 His Kinase A (phospho-acceptor) domain DB29_00761 PF13188 PAS domain DB29_00761 PF00989 PAS fold DB29_00762 PF01565 FAD binding domain DB29_00762 PF02913 FAD linked oxidases, C-terminal domain DB29_00763 PF01758 Sodium Bile acid symporter family DB29_00764 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DB29_00765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_00765 PF03466 LysR substrate binding domain DB29_00766 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_00767 PF10776 Protein of unknown function (DUF2600) DB29_00768 PF01381 Helix-turn-helix DB29_00769 PF13302 Acetyltransferase (GNAT) domain DB29_00771 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00772 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00774 PF07944 Beta-L-arabinofuranosidase, GH127 DB29_00776 PF00005 ABC transporter DB29_00779 PF00072 Response regulator receiver domain DB29_00779 PF00486 Transcriptional regulatory protein, C terminal DB29_00780 PF00512 His Kinase A (phospho-acceptor) domain DB29_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00782 PF01037 Lrp/AsnC ligand binding domain DB29_00783 PF01810 LysE type translocator DB29_00784 PF00155 Aminotransferase class I and II DB29_00784 PF00392 Bacterial regulatory proteins, gntR family DB29_00785 PF12867 DinB superfamily DB29_00786 PF04134 Protein of unknown function, DUF393 DB29_00791 PF14449 Pre-toxin TG DB29_00805 PF05067 Manganese containing catalase DB29_00806 PF01810 LysE type translocator DB29_00807 PF00324 Amino acid permease DB29_00808 PF07875 Coat F domain DB29_00810 PF02423 Ornithine cyclodeaminase/mu-crystallin family DB29_00811 PF00291 Pyridoxal-phosphate dependent enzyme DB29_00812 PF01566 Natural resistance-associated macrophage protein DB29_00814 PF00491 Arginase family DB29_00816 PF00486 Transcriptional regulatory protein, C terminal DB29_00816 PF00072 Response regulator receiver domain DB29_00817 PF00512 His Kinase A (phospho-acceptor) domain DB29_00817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00818 PF00768 D-alanyl-D-alanine carboxypeptidase DB29_00818 PF07943 Penicillin-binding protein 5, C-terminal domain DB29_00820 PF01613 Flavin reductase like domain DB29_00822 PF00005 ABC transporter DB29_00823 PF00512 His Kinase A (phospho-acceptor) domain DB29_00823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00824 PF00072 Response regulator receiver domain DB29_00824 PF00486 Transcriptional regulatory protein, C terminal DB29_00826 PF04203 Sortase domain DB29_00828 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DB29_00828 PF18416 N-acetylglucosamine binding protein domain 2 DB29_00829 PF00106 short chain dehydrogenase DB29_00831 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DB29_00831 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DB29_00832 PF03608 PTS system enzyme II sorbitol-specific factor DB29_00834 PF04198 Putative sugar-binding domain DB29_00834 PF13936 Helix-turn-helix domain DB29_00836 PF08125 Mannitol dehydrogenase C-terminal domain DB29_00836 PF01232 Mannitol dehydrogenase Rossmann domain DB29_00837 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DB29_00837 PF08666 SAF domain DB29_00838 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_00838 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_00839 PF04854 Protein of unknown function, DUF624 DB29_00841 PF07470 Glycosyl Hydrolase Family 88 DB29_00842 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DB29_00842 PF04616 Glycosyl hydrolases family 43 DB29_00844 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00845 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00846 PF13416 Bacterial extracellular solute-binding protein DB29_00848 PF12833 Helix-turn-helix domain DB29_00848 PF17853 GGDEF-like domain DB29_00849 PF02311 AraC-like ligand binding domain DB29_00849 PF12833 Helix-turn-helix domain DB29_00850 PF02018 Carbohydrate binding domain DB29_00850 PF02927 Cellulase N-terminal ig-like domain DB29_00850 PF00759 Glycosyl hydrolase family 9 DB29_00850 PF07679 Immunoglobulin I-set domain DB29_00853 PF01370 NAD dependent epimerase/dehydratase family DB29_00856 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00857 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00858 PF00072 Response regulator receiver domain DB29_00858 PF12833 Helix-turn-helix domain DB29_00859 PF02743 Cache domain DB29_00859 PF00672 HAMP domain DB29_00859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00859 PF06580 Histidine kinase DB29_00860 PF01055 Glycosyl hydrolases family 31 DB29_00860 PF13802 Galactose mutarotase-like DB29_00863 PF00480 ROK family DB29_00864 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DB29_00865 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DB29_00867 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_00870 PF03480 Bacterial extracellular solute-binding protein, family 7 DB29_00871 PF12833 Helix-turn-helix domain DB29_00871 PF12852 Cupin DB29_00872 PF01557 Fumarylacetoacetate (FAA) hydrolase family DB29_00873 PF03575 Peptidase family S51 DB29_00875 PF00561 alpha/beta hydrolase fold DB29_00876 PF07683 Cobalamin synthesis protein cobW C-terminal domain DB29_00876 PF02492 CobW/HypB/UreG, nucleotide-binding domain DB29_00877 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DB29_00878 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DB29_00878 PF01297 Zinc-uptake complex component A periplasmic DB29_00879 PF00005 ABC transporter DB29_00880 PF00950 ABC 3 transport family DB29_00881 PF00171 Aldehyde dehydrogenase family DB29_00882 PF00701 Dihydrodipicolinate synthetase family DB29_00884 PF01614 Bacterial transcriptional regulator DB29_00884 PF09339 IclR helix-turn-helix domain DB29_00886 PF00920 Dehydratase family DB29_00887 PF02447 GntP family permease DB29_00890 PF02780 Transketolase, C-terminal domain DB29_00890 PF02779 Transketolase, pyrimidine binding domain DB29_00890 PF00456 Transketolase, thiamine diphosphate binding domain DB29_00896 PF05958 tRNA (Uracil-5-)-methyltransferase DB29_00896 PF01938 TRAM domain DB29_00897 PF00258 Flavodoxin DB29_00899 PF00781 Diacylglycerol kinase catalytic domain DB29_00900 PF02934 GatB/GatE catalytic domain DB29_00900 PF02637 GatB domain DB29_00901 PF01425 Amidase DB29_00902 PF02686 Glu-tRNAGln amidotransferase C subunit DB29_00903 PF05163 DinB family DB29_00910 PF07537 CamS sex pheromone cAM373 precursor DB29_00911 PF01653 NAD-dependent DNA ligase adenylation domain DB29_00911 PF00533 BRCA1 C Terminus (BRCT) domain DB29_00911 PF12826 Helix-hairpin-helix motif DB29_00911 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DB29_00911 PF03120 NAD-dependent DNA ligase OB-fold domain DB29_00912 PF00580 UvrD/REP helicase N-terminal domain DB29_00912 PF13361 UvrD-like helicase C-terminal domain DB29_00913 PF01884 PcrB family DB29_00915 PF00005 ABC transporter DB29_00916 PF01032 FecCD transport family DB29_00917 PF01032 FecCD transport family DB29_00921 PF01804 Penicillin amidase DB29_00922 PF13382 Adenine deaminase C-terminal domain DB29_00922 PF01979 Amidohydrolase family DB29_00923 PF01371 Trp repressor protein DB29_00924 PF01979 Amidohydrolase family DB29_00924 PF13382 Adenine deaminase C-terminal domain DB29_00926 PF04055 Radical SAM superfamily DB29_00927 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DB29_00928 PF00528 Binding-protein-dependent transport system inner membrane component DB29_00929 PF00571 CBS domain DB29_00929 PF00005 ABC transporter DB29_00930 PF12802 MarR family DB29_00940 PF00005 ABC transporter DB29_00941 PF00196 Bacterial regulatory proteins, luxR family DB29_00941 PF00072 Response regulator receiver domain DB29_00942 PF07730 Histidine kinase DB29_00943 PF13673 Acetyltransferase (GNAT) domain DB29_00946 PF02447 GntP family permease DB29_00947 PF08240 Alcohol dehydrogenase GroES-like domain DB29_00947 PF00107 Zinc-binding dehydrogenase DB29_00949 PF00356 Bacterial regulatory proteins, lacI family DB29_00950 PF07687 Peptidase dimerisation domain DB29_00950 PF01546 Peptidase family M20/M25/M40 DB29_00952 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DB29_00952 PF02843 Phosphoribosylglycinamide synthetase, C domain DB29_00952 PF02844 Phosphoribosylglycinamide synthetase, N domain DB29_00953 PF01808 AICARFT/IMPCHase bienzyme DB29_00953 PF02142 MGS-like domain DB29_00954 PF00551 Formyl transferase DB29_00955 PF00586 AIR synthase related protein, N-terminal domain DB29_00955 PF02769 AIR synthase related protein, C-terminal domain DB29_00956 PF02769 AIR synthase related protein, C-terminal domain DB29_00956 PF00586 AIR synthase related protein, N-terminal domain DB29_00957 PF00156 Phosphoribosyl transferase domain DB29_00958 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DB29_00958 PF00586 AIR synthase related protein, N-terminal domain DB29_00958 PF02769 AIR synthase related protein, C-terminal domain DB29_00960 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase DB29_00961 PF01259 SAICAR synthetase DB29_00962 PF00206 Lyase DB29_00962 PF10397 Adenylosuccinate lyase C-terminus DB29_00963 PF02222 ATP-grasp domain DB29_00963 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DB29_00964 PF00731 AIR carboxylase DB29_00971 PF01970 Tripartite tricarboxylate transporter TctA family DB29_00975 PF12431 Transcriptional regulator DB29_00975 PF08279 HTH domain DB29_00975 PF00072 Response regulator receiver domain DB29_00976 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_00976 PF00989 PAS fold DB29_00976 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DB29_00976 PF17203 Single cache domain 3 DB29_00977 PF00999 Sodium/hydrogen exchanger family DB29_00978 PF00664 ABC transporter transmembrane region DB29_00978 PF00005 ABC transporter DB29_00979 PF00005 ABC transporter DB29_00979 PF00664 ABC transporter transmembrane region DB29_00986 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DB29_00987 PF00195 Chalcone and stilbene synthases, N-terminal domain DB29_00987 PF02797 Chalcone and stilbene synthases, C-terminal domain DB29_00988 PF07739 TipAS antibiotic-recognition domain DB29_00988 PF13411 MerR HTH family regulatory protein DB29_00989 PF13302 Acetyltransferase (GNAT) domain DB29_00990 PF02614 Glucuronate isomerase DB29_00991 PF04962 KduI/IolB family DB29_00993 PF00455 DeoR C terminal sensor domain DB29_00993 PF08220 DeoR-like helix-turn-helix domain DB29_00994 PF02417 Chromate transporter DB29_00995 PF02417 Chromate transporter DB29_00996 PF02621 Menaquinone biosynthesis DB29_00997 PF01048 Phosphorylase superfamily DB29_01000 PF04203 Sortase domain DB29_01003 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DB29_01006 PF00465 Iron-containing alcohol dehydrogenase DB29_01007 PF07729 FCD domain DB29_01007 PF00392 Bacterial regulatory proteins, gntR family DB29_01008 PF02589 LUD domain DB29_01009 PF02589 LUD domain DB29_01009 PF13183 4Fe-4S dicluster domain DB29_01009 PF11870 Domain of unknown function (DUF3390) DB29_01010 PF02754 Cysteine-rich domain DB29_01011 PF02652 L-lactate permease DB29_01013 PF00067 Cytochrome P450 DB29_01014 PF03806 AbgT putative transporter family DB29_01015 PF00183 Hsp90 protein DB29_01016 PF00857 Isochorismatase family DB29_01018 PF01381 Helix-turn-helix DB29_01019 PF00149 Calcineurin-like phosphoesterase DB29_01019 PF02872 5'-nucleotidase, C-terminal domain DB29_01021 PF00171 Aldehyde dehydrogenase family DB29_01022 PF00158 Sigma-54 interaction domain DB29_01022 PF02954 Bacterial regulatory protein, Fis family DB29_01022 PF00989 PAS fold DB29_01023 PF01619 Proline dehydrogenase DB29_01024 PF00149 Calcineurin-like phosphoesterase DB29_01025 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DB29_01028 PF00860 Permease family DB29_01033 PF14151 YfhD-like protein DB29_01034 PF03610 PTS system fructose IIA component DB29_01035 PF02734 DAK2 domain DB29_01036 PF02733 Dak1 domain DB29_01038 PF02779 Transketolase, pyrimidine binding domain DB29_01038 PF00456 Transketolase, thiamine diphosphate binding domain DB29_01038 PF02780 Transketolase, C-terminal domain DB29_01039 PF03611 PTS system sugar-specific permease component DB29_01040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01041 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_01042 PF00485 Phosphoribulokinase / Uridine kinase family DB29_01043 PF13411 MerR HTH family regulatory protein DB29_01044 PF00106 short chain dehydrogenase DB29_01045 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DB29_01045 PF11867 Domain of unknown function (DUF3387) DB29_01045 PF18766 SWI2/SNF2 ATPase DB29_01046 PF01420 Type I restriction modification DNA specificity domain DB29_01047 PF02384 N-6 DNA Methylase DB29_01048 PF02687 FtsX-like permease family DB29_01049 PF00005 ABC transporter DB29_01051 PF05139 Erythromycin esterase DB29_01052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_01052 PF03466 LysR substrate binding domain DB29_01053 PF01113 Dihydrodipicolinate reductase, N-terminus DB29_01059 PF00117 Glutamine amidotransferase class-I DB29_01059 PF02540 NAD synthase DB29_01059 PF00958 GMP synthase C terminal domain DB29_01060 PF11992 Domain of unknown function (DUF3488) DB29_01060 PF13559 Domain of unknown function (DUF4129) DB29_01060 PF01841 Transglutaminase-like superfamily DB29_01061 PF01882 Protein of unknown function DUF58 DB29_01062 PF07726 ATPase family associated with various cellular activities (AAA) DB29_01062 PF17863 AAA lid domain DB29_01064 PF00149 Calcineurin-like phosphoesterase DB29_01067 PF03717 Penicillin-binding Protein dimerisation domain DB29_01067 PF00905 Penicillin binding protein transpeptidase domain DB29_01067 PF05223 NTF2-like N-terminal transpeptidase domain DB29_01068 PF00881 Nitroreductase family DB29_01069 PF05036 Sporulation related domain DB29_01069 PF01520 N-acetylmuramoyl-L-alanine amidase DB29_01070 PF05105 Bacteriophage holin family DB29_01079 PF03949 Malic enzyme, NAD binding domain DB29_01079 PF00390 Malic enzyme, N-terminal domain DB29_01080 PF03390 2-hydroxycarboxylate transporter family DB29_01081 PF00072 Response regulator receiver domain DB29_01082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01082 PF00989 PAS fold DB29_01082 PF17203 Single cache domain 3 DB29_01082 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DB29_01084 PF00005 ABC transporter DB29_01085 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01086 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01091 PF00535 Glycosyl transferase family 2 DB29_01093 PF09586 Bacterial membrane protein YfhO DB29_01098 PF02634 FdhD/NarQ family DB29_01100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DB29_01100 PF00384 Molybdopterin oxidoreductase DB29_01100 PF01568 Molydopterin dinucleotide binding domain DB29_01100 PF12838 4Fe-4S dicluster domain DB29_01100 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DB29_01101 PF01226 Formate/nitrite transporter DB29_01102 PF02597 ThiS family DB29_01103 PF02391 MoaE protein DB29_01104 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DB29_01105 PF03453 MoeA N-terminal region (domain I and II) DB29_01105 PF03454 MoeA C-terminal region (domain IV) DB29_01105 PF00994 Probable molybdopterin binding domain DB29_01106 PF04055 Radical SAM superfamily DB29_01106 PF06463 Molybdenum Cofactor Synthesis C DB29_01107 PF00994 Probable molybdopterin binding domain DB29_01108 PF12804 MobA-like NTP transferase domain DB29_01109 PF01967 MoaC family DB29_01110 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal DB29_01110 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal DB29_01111 PF06827 Zinc finger found in FPG and IleRS DB29_01111 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DB29_01111 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DB29_01112 PF02592 Putative vitamin uptake transporter DB29_01113 PF13580 SIS domain DB29_01114 PF03611 PTS system sugar-specific permease component DB29_01115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01118 PF00118 TCP-1/cpn60 chaperonin family DB29_01119 PF00166 Chaperonin 10 Kd subunit DB29_01120 PF02517 CPBP intramembrane metalloprotease DB29_01122 PF00465 Iron-containing alcohol dehydrogenase DB29_01123 PF03180 NLPA lipoprotein DB29_01124 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01125 PF09383 NIL domain DB29_01125 PF00005 ABC transporter DB29_01127 PF00902 Sec-independent protein translocase protein (TatC) DB29_01128 PF02416 mttA/Hcf106 family DB29_01129 PF02629 CoA binding domain DB29_01129 PF06971 Putative DNA-binding protein N-terminus DB29_01130 PF00005 ABC transporter DB29_01130 PF16326 ABC transporter C-terminal domain DB29_01130 PF12848 ABC transporter DB29_01131 PF00814 Glycoprotease family DB29_01132 PF00583 Acetyltransferase (GNAT) family DB29_01133 PF00814 Glycoprotease family DB29_01134 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DB29_01135 PF00586 AIR synthase related protein, N-terminal domain DB29_01135 PF02769 AIR synthase related protein, C-terminal domain DB29_01138 PF01053 Cys/Met metabolism PLP-dependent enzyme DB29_01139 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DB29_01140 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DB29_01141 PF02308 MgtC family DB29_01148 PF04439 Streptomycin adenylyltransferase DB29_01149 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_01149 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01150 PF01116 Fructose-bisphosphate aldolase class-II DB29_01151 PF00874 PRD domain DB29_01151 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_01151 PF08279 HTH domain DB29_01151 PF05043 Mga helix-turn-helix domain DB29_01153 PF00293 NUDIX domain DB29_01153 PF13344 Haloacid dehalogenase-like hydrolase DB29_01156 PF03591 AzlC protein DB29_01157 PF05437 Branched-chain amino acid transport protein (AzlD) DB29_01158 PF08818 Domain of unknown function (DU1801) DB29_01161 PF00005 ABC transporter DB29_01161 PF17755 UvrA DNA-binding domain DB29_01161 PF17760 UvrA interaction domain DB29_01162 PF00175 Oxidoreductase NAD-binding domain DB29_01162 PF00111 2Fe-2S iron-sulfur cluster binding domain DB29_01162 PF00970 Oxidoreductase FAD-binding domain DB29_01163 PF07690 Major Facilitator Superfamily DB29_01166 PF00180 Isocitrate/isopropylmalate dehydrogenase DB29_01168 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DB29_01169 PF00190 Cupin DB29_01171 PF02040 Arsenical pump membrane protein DB29_01172 PF01022 Bacterial regulatory protein, arsR family DB29_01173 PF02559 CarD-like/TRCF domain DB29_01174 PF00313 'Cold-shock' DNA-binding domain DB29_01175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01177 PF07883 Cupin domain DB29_01179 PF01209 ubiE/COQ5 methyltransferase family DB29_01180 PF03176 MMPL family DB29_01182 PF17283 SprT-like zinc ribbon domain DB29_01182 PF10263 SprT-like family DB29_01184 PF17674 HHH domain DB29_01184 PF00575 S1 RNA binding domain DB29_01184 PF09371 Tex-like protein N-terminal domain DB29_01184 PF16921 Tex protein YqgF-like domain DB29_01186 PF04545 Sigma-70, region 4 DB29_01186 PF04539 Sigma-70 region 3 DB29_01186 PF04542 Sigma-70 region 2 DB29_01187 PF13581 Histidine kinase-like ATPase domain DB29_01188 PF01740 STAS domain DB29_01189 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain DB29_01189 PF07228 Stage II sporulation protein E (SpoIIE) DB29_01190 PF13581 Histidine kinase-like ATPase domain DB29_01191 PF01740 STAS domain DB29_01192 PF08678 Rsbr N terminal DB29_01192 PF01740 STAS domain DB29_01193 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DB29_01194 PF01402 Ribbon-helix-helix protein, copG family DB29_01195 PF01168 Alanine racemase, N-terminal domain DB29_01195 PF00842 Alanine racemase, C-terminal domain DB29_01197 PF01648 4'-phosphopantetheinyl transferase superfamily DB29_01198 PF01694 Rhomboid family DB29_01200 PF00884 Sulfatase DB29_01202 PF02557 D-alanyl-D-alanine carboxypeptidase DB29_01204 PF04854 Protein of unknown function, DUF624 DB29_01205 PF06224 Winged helix DNA-binding domain DB29_01207 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_01207 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01208 PF01261 Xylose isomerase-like TIM barrel DB29_01211 PF03334 Na+/H+ antiporter subunit DB29_01212 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DB29_01213 PF01899 Na+/H+ ion antiporter subunit DB29_01214 PF00361 Proton-conducting membrane transporter DB29_01215 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DB29_01216 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DB29_01217 PF13244 Domain of unknown function (DUF4040) DB29_01217 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DB29_01217 PF00361 Proton-conducting membrane transporter DB29_01218 PF02702 Osmosensitive K+ channel His kinase sensor domain DB29_01220 PF01638 HxlR-like helix-turn-helix DB29_01221 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_01221 PF00005 ABC transporter DB29_01222 PF00877 NlpC/P60 family DB29_01223 PF17676 LD-carboxypeptidase C-terminal domain DB29_01223 PF02016 LD-carboxypeptidase N-terminal domain DB29_01224 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_01225 PF00005 ABC transporter DB29_01225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_01226 PF12911 N-terminal TM domain of oligopeptide transport permease C DB29_01226 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01227 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01228 PF04951 D-aminopeptidase DB29_01229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01230 PF00072 Response regulator receiver domain DB29_01230 PF08664 YcbB domain DB29_01231 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01232 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01233 PF00497 Bacterial extracellular solute-binding proteins, family 3 DB29_01234 PF00005 ABC transporter DB29_01235 PF00892 EamA-like transporter family DB29_01236 PF10282 Lactonase, 7-bladed beta-propeller DB29_01237 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DB29_01237 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DB29_01238 PF13556 PucR C-terminal helix-turn-helix domain DB29_01238 PF17853 GGDEF-like domain DB29_01238 PF06018 CodY GAF-like domain DB29_01239 PF00581 Rhodanese-like domain DB29_01240 PF00324 Amino acid permease DB29_01241 PF13539 D-alanyl-D-alanine carboxypeptidase DB29_01243 PF05922 Peptidase inhibitor I9 DB29_01243 PF00082 Subtilase family DB29_01245 PF16360 GTP-binding GTPase Middle Region DB29_01245 PF01926 50S ribosome-binding GTPase DB29_01245 PF13167 GTP-binding GTPase N-terminal DB29_01246 PF00561 alpha/beta hydrolase fold DB29_01247 PF03741 Integral membrane protein TerC family DB29_01249 PF03070 TENA/THI-4/PQQC family DB29_01250 PF03352 Methyladenine glycosylase DB29_01253 PF13860 FlgD Ig-like domain DB29_01253 PF05922 Peptidase inhibitor I9 DB29_01253 PF00082 Subtilase family DB29_01253 PF02225 PA domain DB29_01254 PF02811 PHP domain DB29_01255 PF00107 Zinc-binding dehydrogenase DB29_01255 PF08240 Alcohol dehydrogenase GroES-like domain DB29_01256 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DB29_01258 PF13037 Domain of unknown function (DUF3898) DB29_01258 PF13039 Protein of unknown function (DUF3900) DB29_01259 PF13556 PucR C-terminal helix-turn-helix domain DB29_01259 PF17853 GGDEF-like domain DB29_01259 PF05651 Putative sugar diacid recognition DB29_01260 PF02595 Glycerate kinase family DB29_01263 PF01613 Flavin reductase like domain DB29_01265 PF00557 Metallopeptidase family M24 DB29_01266 PF00583 Acetyltransferase (GNAT) family DB29_01267 PF12897 Alanine-glyoxylate amino-transferase DB29_01270 PF01047 MarR family DB29_01272 PF00571 CBS domain DB29_01272 PF01769 Divalent cation transporter DB29_01272 PF03448 MgtE intracellular N domain DB29_01273 PF00072 Response regulator receiver domain DB29_01273 PF00196 Bacterial regulatory proteins, luxR family DB29_01274 PF07730 Histidine kinase DB29_01275 PF00487 Fatty acid desaturase DB29_01276 PF12833 Helix-turn-helix domain DB29_01276 PF02311 AraC-like ligand binding domain DB29_01277 PF02056 Family 4 glycosyl hydrolase DB29_01277 PF11975 Family 4 glycosyl hydrolase C-terminal domain DB29_01278 PF09335 SNARE associated Golgi protein DB29_01279 PF04545 Sigma-70, region 4 DB29_01281 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01282 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01283 PF12833 Helix-turn-helix domain DB29_01283 PF00072 Response regulator receiver domain DB29_01284 PF02743 Cache domain DB29_01284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01284 PF06580 Histidine kinase DB29_01284 PF00672 HAMP domain DB29_01286 PF14256 YwiC-like protein DB29_01287 PF07690 Major Facilitator Superfamily DB29_01288 PF00196 Bacterial regulatory proteins, luxR family DB29_01288 PF00072 Response regulator receiver domain DB29_01289 PF07730 Histidine kinase DB29_01289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01291 PF02665 Nitrate reductase gamma subunit DB29_01293 PF13247 4Fe-4S dicluster domain DB29_01293 PF14711 Respiratory nitrate reductase beta C-terminal DB29_01294 PF00384 Molybdopterin oxidoreductase DB29_01294 PF01568 Molydopterin dinucleotide binding domain DB29_01294 PF14710 Respiratory nitrate reductase alpha N-terminal DB29_01296 PF01546 Peptidase family M20/M25/M40 DB29_01296 PF07687 Peptidase dimerisation domain DB29_01297 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DB29_01297 PF00367 phosphotransferase system, EIIB DB29_01297 PF02378 Phosphotransferase system, EIIC DB29_01298 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DB29_01299 PF01380 SIS domain DB29_01299 PF01418 Helix-turn-helix domain, rpiR family DB29_01304 PF00005 ABC transporter DB29_01311 PF00722 Glycosyl hydrolases family 16 DB29_01332 PF01580 FtsK/SpoIIIE family DB29_01332 PF12538 DNA transporter DB29_01333 PF10140 WXG100 protein secretion system (Wss), protein YukC DB29_01335 PF06013 Proteins of 100 residues with WXG DB29_01336 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01337 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01339 PF12833 Helix-turn-helix domain DB29_01339 PF02311 AraC-like ligand binding domain DB29_01340 PF00005 ABC transporter DB29_01341 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DB29_01341 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DB29_01342 PF00106 short chain dehydrogenase DB29_01343 PF00012 Hsp70 protein DB29_01345 PF01676 Metalloenzyme superfamily DB29_01346 PF01168 Alanine racemase, N-terminal domain DB29_01347 PF00155 Aminotransferase class I and II DB29_01348 PF02126 Phosphotriesterase family DB29_01349 PF10797 Protein of unknown function DB29_01350 PF10941 Protein of unknown function DUF2620 DB29_01354 PF03070 TENA/THI-4/PQQC family DB29_01355 PF01546 Peptidase family M20/M25/M40 DB29_01355 PF07687 Peptidase dimerisation domain DB29_01356 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01356 PF00989 PAS fold DB29_01356 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DB29_01356 PF17203 Single cache domain 3 DB29_01357 PF12431 Transcriptional regulator DB29_01357 PF00072 Response regulator receiver domain DB29_01358 PF03600 Citrate transporter DB29_01361 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01362 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01363 PF02447 GntP family permease DB29_01364 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DB29_01365 PF07005 Sugar-binding N-terminal domain DB29_01365 PF17042 Nucleotide-binding C-terminal domain DB29_01366 PF00455 DeoR C terminal sensor domain DB29_01366 PF08220 DeoR-like helix-turn-helix domain DB29_01367 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_01368 PF05504 Spore germination B3/ GerAC like, C-terminal DB29_01372 PF03301 Tryptophan 2,3-dioxygenase DB29_01373 PF04199 Putative cyclase DB29_01374 PF00266 Aminotransferase class-V DB29_01375 PF04055 Radical SAM superfamily DB29_01377 PF07690 Major Facilitator Superfamily DB29_01378 PF06486 Protein of unknown function (DUF1093) DB29_01382 PF00041 Fibronectin type III domain DB29_01382 PF00704 Glycosyl hydrolases family 18 DB29_01384 PF04794 YdjC-like protein DB29_01385 PF11975 Family 4 glycosyl hydrolase C-terminal domain DB29_01385 PF02056 Family 4 glycosyl hydrolase DB29_01386 PF02378 Phosphotransferase system, EIIC DB29_01387 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DB29_01388 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01389 PF02146 Sir2 family DB29_01391 PF01758 Sodium Bile acid symporter family DB29_01392 PF07690 Major Facilitator Superfamily DB29_01395 PF02441 Flavoprotein DB29_01396 PF00106 short chain dehydrogenase DB29_01397 PF03786 D-mannonate dehydratase (UxuA) DB29_01398 PF08240 Alcohol dehydrogenase GroES-like domain DB29_01398 PF00107 Zinc-binding dehydrogenase DB29_01399 PF00890 FAD binding domain DB29_01399 PF14537 Cytochrome c3 DB29_01400 PF00180 Isocitrate/isopropylmalate dehydrogenase DB29_01401 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_01401 PF03466 LysR substrate binding domain DB29_01405 PF04303 PrpF protein DB29_01406 PF07702 UTRA domain DB29_01406 PF00392 Bacterial regulatory proteins, gntR family DB29_01407 PF00005 ABC transporter DB29_01409 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DB29_01409 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DB29_01410 PF00175 Oxidoreductase NAD-binding domain DB29_01410 PF00258 Flavodoxin DB29_01410 PF00667 FAD binding domain DB29_01411 PF14824 Sirohaem biosynthesis protein central DB29_01412 PF01903 CbiX DB29_01413 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DB29_01415 PF01384 Phosphate transporter family DB29_01416 PF14306 PUA-like domain DB29_01416 PF01747 ATP-sulfurylase DB29_01417 PF01507 Phosphoadenosine phosphosulfate reductase family DB29_01418 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_01419 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DB29_01420 PF03480 Bacterial extracellular solute-binding protein, family 7 DB29_01422 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_01422 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01423 PF00392 Bacterial regulatory proteins, gntR family DB29_01423 PF07729 FCD domain DB29_01426 PF00005 ABC transporter DB29_01427 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01428 PF00296 Luciferase-like monooxygenase DB29_01429 PF09084 NMT1/THI5 like DB29_01430 PF03358 NADPH-dependent FMN reductase DB29_01431 PF10055 Uncharacterized small protein (DUF2292) DB29_01433 PF03475 3-alpha domain DB29_01433 PF03473 MOSC domain DB29_01438 PF13193 AMP-binding enzyme C-terminal domain DB29_01438 PF00501 AMP-binding enzyme DB29_01443 PF01361 Tautomerase enzyme DB29_01444 PF06779 Uncharacterised MFS-type transporter YbfB DB29_01446 PF07302 AroM protein DB29_01451 PF07905 Purine catabolism regulatory protein-like family DB29_01451 PF13556 PucR C-terminal helix-turn-helix domain DB29_01451 PF17853 GGDEF-like domain DB29_01452 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01452 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_01454 PF00480 ROK family DB29_01455 PF01263 Aldose 1-epimerase DB29_01456 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DB29_01456 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DB29_01457 PF01261 Xylose isomerase-like TIM barrel DB29_01458 PF09339 IclR helix-turn-helix domain DB29_01458 PF01614 Bacterial transcriptional regulator DB29_01459 PF07687 Peptidase dimerisation domain DB29_01459 PF01546 Peptidase family M20/M25/M40 DB29_01461 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_01461 PF00005 ABC transporter DB29_01462 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_01462 PF00005 ABC transporter DB29_01464 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_01466 PF01979 Amidohydrolase family DB29_01467 PF01979 Amidohydrolase family DB29_01469 PF00465 Iron-containing alcohol dehydrogenase DB29_01472 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01473 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01474 PF03648 Glycosyl hydrolase family 67 N-terminus DB29_01474 PF07477 Glycosyl hydrolase family 67 C-terminus DB29_01474 PF07488 Glycosyl hydrolase family 67 middle domain DB29_01475 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DB29_01475 PF04616 Glycosyl hydrolases family 43 DB29_01476 PF07883 Cupin domain DB29_01476 PF12833 Helix-turn-helix domain DB29_01478 PF00005 ABC transporter DB29_01478 PF09383 NIL domain DB29_01479 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01480 PF03180 NLPA lipoprotein DB29_01481 PF01546 Peptidase family M20/M25/M40 DB29_01481 PF07687 Peptidase dimerisation domain DB29_01483 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DB29_01483 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DB29_01484 PF02447 GntP family permease DB29_01485 PF01380 SIS domain DB29_01485 PF01418 Helix-turn-helix domain, rpiR family DB29_01487 PF07690 Major Facilitator Superfamily DB29_01488 PF00682 HMGL-like DB29_01489 PF00392 Bacterial regulatory proteins, gntR family DB29_01489 PF07729 FCD domain DB29_01490 PF02515 CoA-transferase family III DB29_01492 PF00474 Sodium:solute symporter family DB29_01500 PF01487 Type I 3-dehydroquinase DB29_01503 PF03358 NADPH-dependent FMN reductase DB29_01505 PF01266 FAD dependent oxidoreductase DB29_01508 PF00486 Transcriptional regulatory protein, C terminal DB29_01508 PF00072 Response regulator receiver domain DB29_01509 PF00672 HAMP domain DB29_01509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01509 PF00512 His Kinase A (phospho-acceptor) domain DB29_01514 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DB29_01514 PF13378 Enolase C-terminal domain-like DB29_01516 PF00294 pfkB family carbohydrate kinase DB29_01517 PF01614 Bacterial transcriptional regulator DB29_01517 PF09339 IclR helix-turn-helix domain DB29_01519 PF13472 GDSL-like Lipase/Acylhydrolase family DB29_01520 PF00004 ATPase family associated with various cellular activities (AAA) DB29_01524 PF00535 Glycosyl transferase family 2 DB29_01526 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DB29_01526 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DB29_01526 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DB29_01529 PF13439 Glycosyltransferase Family 4 DB29_01529 PF00534 Glycosyl transferases group 1 DB29_01532 PF13439 Glycosyltransferase Family 4 DB29_01532 PF00534 Glycosyl transferases group 1 DB29_01533 PF01370 NAD dependent epimerase/dehydratase family DB29_01536 PF18389 TrmO C-terminal domain DB29_01536 PF01980 tRNA-methyltransferase O DB29_01538 PF08241 Methyltransferase domain DB29_01540 PF04055 Radical SAM superfamily DB29_01541 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DB29_01541 PF13186 Iron-sulfur cluster-binding domain DB29_01541 PF04055 Radical SAM superfamily DB29_01547 PF03413 Peptidase propeptide and YPEB domain DB29_01548 PF03413 Peptidase propeptide and YPEB domain DB29_01549 PF00672 HAMP domain DB29_01549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01549 PF00512 His Kinase A (phospho-acceptor) domain DB29_01550 PF00486 Transcriptional regulatory protein, C terminal DB29_01550 PF00072 Response regulator receiver domain DB29_01551 PF13580 SIS domain DB29_01552 PF07702 UTRA domain DB29_01552 PF00392 Bacterial regulatory proteins, gntR family DB29_01554 PF01476 LysM domain DB29_01554 PF06725 3D domain DB29_01555 PF00480 ROK family DB29_01559 PF05043 Mga helix-turn-helix domain DB29_01559 PF08279 HTH domain DB29_01559 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_01559 PF00874 PRD domain DB29_01560 PF00232 Glycosyl hydrolase family 1 DB29_01561 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DB29_01562 PF02378 Phosphotransferase system, EIIC DB29_01563 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01564 PF00805 Pentapeptide repeats (8 copies) DB29_01568 PF07690 Major Facilitator Superfamily DB29_01570 PF00392 Bacterial regulatory proteins, gntR family DB29_01570 PF07729 FCD domain DB29_01571 PF00701 Dihydrodipicolinate synthetase family DB29_01572 PF00171 Aldehyde dehydrogenase family DB29_01574 PF01970 Tripartite tricarboxylate transporter TctA family DB29_01576 PF03786 D-mannonate dehydratase (UxuA) DB29_01586 PF02743 Cache domain DB29_01586 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DB29_01586 PF00672 HAMP domain DB29_01588 PF03600 Citrate transporter DB29_01591 PF02954 Bacterial regulatory protein, Fis family DB29_01591 PF00989 PAS fold DB29_01591 PF00158 Sigma-54 interaction domain DB29_01592 PF01174 SNO glutamine amidotransferase family DB29_01593 PF01680 SOR/SNZ family DB29_01594 PF00155 Aminotransferase class I and II DB29_01594 PF00392 Bacterial regulatory proteins, gntR family DB29_01598 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01599 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_01601 PF01116 Fructose-bisphosphate aldolase class-II DB29_01602 PF05043 Mga helix-turn-helix domain DB29_01602 PF00874 PRD domain DB29_01602 PF08279 HTH domain DB29_01602 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_01602 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_01603 PF08125 Mannitol dehydrogenase C-terminal domain DB29_01603 PF01232 Mannitol dehydrogenase Rossmann domain DB29_01604 PF08666 SAF domain DB29_01604 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DB29_01605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_01607 PF03480 Bacterial extracellular solute-binding protein, family 7 DB29_01609 PF08240 Alcohol dehydrogenase GroES-like domain DB29_01609 PF00107 Zinc-binding dehydrogenase DB29_01610 PF12833 Helix-turn-helix domain DB29_01611 PF01547 Bacterial extracellular solute-binding protein DB29_01612 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01613 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01616 PF01053 Cys/Met metabolism PLP-dependent enzyme DB29_01617 PF04239 Protein of unknown function (DUF421) DB29_01618 PF00474 Sodium:solute symporter family DB29_01619 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01619 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_01620 PF01116 Fructose-bisphosphate aldolase class-II DB29_01621 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01621 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_01622 PF01261 Xylose isomerase-like TIM barrel DB29_01623 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DB29_01623 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DB29_01623 PF00205 Thiamine pyrophosphate enzyme, central domain DB29_01624 PF00294 pfkB family carbohydrate kinase DB29_01625 PF04962 KduI/IolB family DB29_01626 PF00171 Aldehyde dehydrogenase family DB29_01627 PF08220 DeoR-like helix-turn-helix domain DB29_01627 PF00455 DeoR C terminal sensor domain DB29_01628 PF07690 Major Facilitator Superfamily DB29_01630 PF17934 Tetracyclin repressor-like, C-terminal domain DB29_01630 PF00440 Bacterial regulatory proteins, tetR family DB29_01631 PF00893 Small Multidrug Resistance protein DB29_01632 PF00893 Small Multidrug Resistance protein DB29_01633 PF04397 LytTr DNA-binding domain DB29_01633 PF00072 Response regulator receiver domain DB29_01639 PF00005 ABC transporter DB29_01640 PF02056 Family 4 glycosyl hydrolase DB29_01640 PF11975 Family 4 glycosyl hydrolase C-terminal domain DB29_01641 PF02653 Branched-chain amino acid transport system / permease component DB29_01642 PF00005 ABC transporter DB29_01643 PF13407 Periplasmic binding protein domain DB29_01645 PF02610 L-arabinose isomerase DB29_01645 PF11762 L-arabinose isomerase C-terminal domain DB29_01646 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DB29_01646 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DB29_01647 PF00596 Class II Aldolase and Adducin N-terminal domain DB29_01648 PF13685 Iron-containing alcohol dehydrogenase DB29_01649 PF13344 Haloacid dehalogenase-like hydrolase DB29_01650 PF02311 AraC-like ligand binding domain DB29_01650 PF12833 Helix-turn-helix domain DB29_01652 PF04854 Protein of unknown function, DUF624 DB29_01653 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01654 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01656 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DB29_01657 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01658 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01660 PF18370 Rhamnogalacturonan I lyases beta-sheet domain DB29_01663 PF00486 Transcriptional regulatory protein, C terminal DB29_01663 PF00072 Response regulator receiver domain DB29_01664 PF00512 His Kinase A (phospho-acceptor) domain DB29_01664 PF18719 ArlS sensor domain DB29_01664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01666 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01667 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01668 PF13416 Bacterial extracellular solute-binding protein DB29_01669 PF12833 Helix-turn-helix domain DB29_01669 PF00072 Response regulator receiver domain DB29_01670 PF06580 Histidine kinase DB29_01670 PF00672 HAMP domain DB29_01670 PF02743 Cache domain DB29_01670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01672 PF03786 D-mannonate dehydratase (UxuA) DB29_01674 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_01674 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01675 PF02311 AraC-like ligand binding domain DB29_01675 PF12833 Helix-turn-helix domain DB29_01676 PF07690 Major Facilitator Superfamily DB29_01677 PF05336 L-rhamnose mutarotase DB29_01678 PF00596 Class II Aldolase and Adducin N-terminal domain DB29_01679 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DB29_01679 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DB29_01679 PF06134 L-rhamnose isomerase (RhaA) DB29_01689 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_01689 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_01691 PF03009 Glycerophosphoryl diester phosphodiesterase family DB29_01692 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01693 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01694 PF04309 Glycerol-3-phosphate responsive antiterminator DB29_01697 PF07690 Major Facilitator Superfamily DB29_01698 PF03009 Glycerophosphoryl diester phosphodiesterase family DB29_01699 PF13416 Bacterial extracellular solute-binding protein DB29_01700 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01701 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01702 PF00005 ABC transporter DB29_01702 PF17912 MalK OB fold domain DB29_01703 PF03009 Glycerophosphoryl diester phosphodiesterase family DB29_01704 PF00970 Oxidoreductase FAD-binding domain DB29_01704 PF00042 Globin DB29_01704 PF00175 Oxidoreductase NAD-binding domain DB29_01705 PF02082 Transcriptional regulator DB29_01707 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DB29_01707 PF12833 Helix-turn-helix domain DB29_01708 PF00106 short chain dehydrogenase DB29_01718 PF18801 response regulator aspartate phosphatase H, N terminal DB29_01719 PF00108 Thiolase, N-terminal domain DB29_01719 PF02803 Thiolase, C-terminal domain DB29_01720 PF00501 AMP-binding enzyme DB29_01720 PF13193 AMP-binding enzyme C-terminal domain DB29_01721 PF00501 AMP-binding enzyme DB29_01721 PF13193 AMP-binding enzyme C-terminal domain DB29_01722 PF00005 ABC transporter DB29_01722 PF17912 MalK OB fold domain DB29_01723 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01724 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01728 PF06339 Ectoine synthase DB29_01729 PF00202 Aminotransferase class-III DB29_01730 PF00583 Acetyltransferase (GNAT) family DB29_01732 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_01733 PF00171 Aldehyde dehydrogenase family DB29_01734 PF00465 Iron-containing alcohol dehydrogenase DB29_01735 PF04960 Glutaminase DB29_01737 PF00465 Iron-containing alcohol dehydrogenase DB29_01738 PF02954 Bacterial regulatory protein, Fis family DB29_01738 PF00158 Sigma-54 interaction domain DB29_01738 PF00989 PAS fold DB29_01742 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DB29_01746 PF00150 Cellulase (glycosyl hydrolase family 5) DB29_01748 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01749 PF00528 Binding-protein-dependent transport system inner membrane component DB29_01750 PF00480 ROK family DB29_01751 PF00232 Glycosyl hydrolase family 1 DB29_01752 PF00356 Bacterial regulatory proteins, lacI family DB29_01754 PF02378 Phosphotransferase system, EIIC DB29_01754 PF00367 phosphotransferase system, EIIB DB29_01755 PF01380 SIS domain DB29_01758 PF03812 2-keto-3-deoxygluconate permease DB29_01759 PF07005 Sugar-binding N-terminal domain DB29_01759 PF17042 Nucleotide-binding C-terminal domain DB29_01760 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DB29_01761 PF01380 SIS domain DB29_01761 PF01418 Helix-turn-helix domain, rpiR family DB29_01762 PF00664 ABC transporter transmembrane region DB29_01762 PF00005 ABC transporter DB29_01763 PF13411 MerR HTH family regulatory protein DB29_01764 PF00356 Bacterial regulatory proteins, lacI family DB29_01765 PF03480 Bacterial extracellular solute-binding protein, family 7 DB29_01767 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_01768 PF01055 Glycosyl hydrolases family 31 DB29_01768 PF13802 Galactose mutarotase-like DB29_01773 PF01256 Carbohydrate kinase DB29_01773 PF03853 YjeF-related protein N-terminus DB29_01774 PF01594 AI-2E family transporter DB29_01776 PF00210 Ferritin-like domain DB29_01778 PF07662 Na+ dependent nucleoside transporter C-terminus DB29_01778 PF01773 Na+ dependent nucleoside transporter N-terminus DB29_01778 PF07670 Nucleoside recognition DB29_01779 PF00561 alpha/beta hydrolase fold DB29_01780 PF02254 TrkA-N domain DB29_01780 PF02080 TrkA-C domain DB29_01781 PF02028 BCCT, betaine/carnitine/choline family transporter DB29_01783 PF00293 NUDIX domain DB29_01784 PF10710 Protein of unknown function (DUF2512) DB29_01788 PF00392 Bacterial regulatory proteins, gntR family DB29_01788 PF00155 Aminotransferase class I and II DB29_01789 PF00892 EamA-like transporter family DB29_01791 PF00579 tRNA synthetases class I (W and Y) DB29_01792 PF13649 Methyltransferase domain DB29_01798 PF07827 KNTase C-terminal domain DB29_01799 PF03965 Penicillinase repressor DB29_01800 PF00905 Penicillin binding protein transpeptidase domain DB29_01800 PF05569 BlaR1 peptidase M56 DB29_01803 PF00749 tRNA synthetases class I (E and Q), catalytic domain DB29_01805 PF00005 ABC transporter DB29_01809 PF00005 ABC transporter DB29_01811 PF07690 Major Facilitator Superfamily DB29_01812 PF00440 Bacterial regulatory proteins, tetR family DB29_01813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01814 PF00486 Transcriptional regulatory protein, C terminal DB29_01814 PF00072 Response regulator receiver domain DB29_01815 PF00005 ABC transporter DB29_01816 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase DB29_01817 PF01381 Helix-turn-helix DB29_01820 PF12833 Helix-turn-helix domain DB29_01820 PF02311 AraC-like ligand binding domain DB29_01821 PF01380 SIS domain DB29_01822 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DB29_01822 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DB29_01822 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DB29_01822 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DB29_01824 PF02457 DisA bacterial checkpoint controller nucleotide-binding DB29_01825 PF13490 Putative zinc-finger DB29_01826 PF08281 Sigma-70, region 4 DB29_01826 PF04542 Sigma-70 region 2 DB29_01829 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_01830 PF00657 GDSL-like Lipase/Acylhydrolase DB29_01831 PF00107 Zinc-binding dehydrogenase DB29_01831 PF08240 Alcohol dehydrogenase GroES-like domain DB29_01838 PF02954 Bacterial regulatory protein, Fis family DB29_01838 PF00989 PAS fold DB29_01838 PF00158 Sigma-54 interaction domain DB29_01839 PF13378 Enolase C-terminal domain-like DB29_01841 PF13411 MerR HTH family regulatory protein DB29_01844 PF13411 MerR HTH family regulatory protein DB29_01844 PF07739 TipAS antibiotic-recognition domain DB29_01845 PF13649 Methyltransferase domain DB29_01849 PF01522 Polysaccharide deacetylase DB29_01852 PF17898 Spore germination GerD central core domain DB29_01857 PF10609 NUBPL iron-transfer P-loop NTPase DB29_01858 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DB29_01858 PF00367 phosphotransferase system, EIIB DB29_01858 PF02378 Phosphotransferase system, EIIC DB29_01859 PF03123 CAT RNA binding domain DB29_01859 PF00874 PRD domain DB29_01860 PF01520 N-acetylmuramoyl-L-alanine amidase DB29_01864 PF02915 Rubrerythrin DB29_01869 PF00380 Ribosomal protein S9/S16 DB29_01870 PF00572 Ribosomal protein L13 DB29_01871 PF01416 tRNA pseudouridine synthase DB29_01873 PF00005 ABC transporter DB29_01874 PF00005 ABC transporter DB29_01875 PF01196 Ribosomal protein L17 DB29_01876 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DB29_01876 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DB29_01876 PF01000 RNA polymerase Rpb3/RpoA insert domain DB29_01877 PF00411 Ribosomal protein S11 DB29_01878 PF00416 Ribosomal protein S13/S18 DB29_01879 PF01176 Translation initiation factor 1A / IF-1 DB29_01880 PF00557 Metallopeptidase family M24 DB29_01881 PF05191 Adenylate kinase, active site lid DB29_01882 PF00344 SecY translocase DB29_01883 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DB29_01884 PF00327 Ribosomal protein L30p/L7e DB29_01885 PF00333 Ribosomal protein S5, N-terminal domain DB29_01885 PF03719 Ribosomal protein S5, C-terminal domain DB29_01886 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DB29_01887 PF00347 Ribosomal protein L6 DB29_01888 PF00410 Ribosomal protein S8 DB29_01889 PF00253 Ribosomal protein S14p/S29e DB29_01890 PF00673 ribosomal L5P family C-terminus DB29_01890 PF00281 Ribosomal protein L5 DB29_01891 PF00467 KOW motif DB29_01891 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DB29_01892 PF00238 Ribosomal protein L14p/L23e DB29_01893 PF00366 Ribosomal protein S17 DB29_01894 PF00831 Ribosomal L29 protein DB29_01895 PF00252 Ribosomal protein L16p/L10e DB29_01896 PF07650 KH domain DB29_01896 PF00189 Ribosomal protein S3, C-terminal domain DB29_01897 PF00237 Ribosomal protein L22p/L17e DB29_01898 PF00203 Ribosomal protein S19 DB29_01899 PF03947 Ribosomal Proteins L2, C-terminal domain DB29_01899 PF00181 Ribosomal Proteins L2, RNA binding domain DB29_01900 PF00276 Ribosomal protein L23 DB29_01901 PF00573 Ribosomal protein L4/L1 family DB29_01902 PF00297 Ribosomal protein L3 DB29_01903 PF00338 Ribosomal protein S10p/S20e DB29_01904 PF00009 Elongation factor Tu GTP binding domain DB29_01904 PF03143 Elongation factor Tu C-terminal domain DB29_01904 PF03144 Elongation factor Tu domain 2 DB29_01905 PF00009 Elongation factor Tu GTP binding domain DB29_01905 PF14492 Elongation Factor G, domain II DB29_01905 PF03764 Elongation factor G, domain IV DB29_01905 PF00679 Elongation factor G C-terminus DB29_01905 PF03144 Elongation factor Tu domain 2 DB29_01906 PF00177 Ribosomal protein S7p/S5e DB29_01907 PF00164 Ribosomal protein S12/S23 DB29_01908 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DB29_01909 PF04997 RNA polymerase Rpb1, domain 1 DB29_01909 PF04983 RNA polymerase Rpb1, domain 3 DB29_01909 PF04998 RNA polymerase Rpb1, domain 5 DB29_01909 PF00623 RNA polymerase Rpb1, domain 2 DB29_01909 PF05000 RNA polymerase Rpb1, domain 4 DB29_01910 PF00562 RNA polymerase Rpb2, domain 6 DB29_01910 PF10385 RNA polymerase beta subunit external 1 domain DB29_01910 PF04563 RNA polymerase beta subunit DB29_01910 PF04565 RNA polymerase Rpb2, domain 3 DB29_01910 PF04560 RNA polymerase Rpb2, domain 7 DB29_01910 PF04561 RNA polymerase Rpb2, domain 2 DB29_01911 PF05175 Methyltransferase small domain DB29_01912 PF16320 Ribosomal protein L7/L12 dimerisation domain DB29_01912 PF00542 Ribosomal protein L7/L12 C-terminal domain DB29_01913 PF00466 Ribosomal protein L10 DB29_01914 PF00687 Ribosomal protein L1p/L10e family DB29_01915 PF03946 Ribosomal protein L11, N-terminal domain DB29_01915 PF00298 Ribosomal protein L11, RNA binding domain DB29_01916 PF02357 Transcription termination factor nusG DB29_01916 PF00467 KOW motif DB29_01917 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DB29_01918 PF08281 Sigma-70, region 4 DB29_01918 PF04542 Sigma-70 region 2 DB29_01919 PF05991 YacP-like NYN domain DB29_01920 PF00588 SpoU rRNA Methylase family DB29_01920 PF08032 RNA 2'-O ribose methyltransferase substrate binding DB29_01921 PF00636 Ribonuclease III domain DB29_01922 PF01406 tRNA synthetases class I (C) catalytic domain DB29_01922 PF09190 DALR domain DB29_01923 PF06426 Serine acetyltransferase, N-terminal DB29_01923 PF00132 Bacterial transferase hexapeptide (six repeats) DB29_01924 PF00749 tRNA synthetases class I (E and Q), catalytic domain DB29_01925 PF02542 YgbB family DB29_01926 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DB29_01928 PF02457 DisA bacterial checkpoint controller nucleotide-binding DB29_01928 PF10635 DisA bacterial checkpoint controller linker region DB29_01929 PF18073 Rubredoxin metal binding domain DB29_01930 PF00004 ATPase family associated with various cellular activities (AAA) DB29_01930 PF10431 C-terminal, D2-small domain, of ClpB protein DB29_01930 PF02861 Clp amino terminal domain, pathogenicity island component DB29_01930 PF17871 AAA lid domain DB29_01930 PF07724 AAA domain (Cdc48 subfamily) DB29_01931 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain DB29_01932 PF02151 UvrB/uvrC motif DB29_01933 PF05848 CtsR N-terminal HTH domain DB29_01933 PF17727 CtsR C-terminal dimerization domain DB29_01935 PF00152 tRNA synthetases class II (D, K and N) DB29_01935 PF01336 OB-fold nucleic acid binding domain DB29_01936 PF01207 Dihydrouridine synthase (Dus) DB29_01937 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DB29_01938 PF02152 Dihydroneopterin aldolase DB29_01939 PF00809 Pterin binding enzyme DB29_01940 PF01063 Amino-transferase class IV DB29_01941 PF00117 Glutamine amidotransferase class-I DB29_01942 PF04715 Anthranilate synthase component I, N terminal region DB29_01942 PF00425 chorismate binding enzyme DB29_01943 PF00291 Pyridoxal-phosphate dependent enzyme DB29_01944 PF01430 Hsp33 protein DB29_01945 PF03309 Type III pantothenate kinase DB29_01948 PF01171 PP-loop family DB29_01948 PF11734 TilS substrate C-terminal domain DB29_01949 PF00069 Protein kinase domain DB29_01950 PF00092 von Willebrand factor type A domain DB29_01951 PF07228 Stage II sporulation protein E (SpoIIE) DB29_01952 PF03600 Citrate transporter DB29_01953 PF00575 S1 RNA binding domain DB29_01955 PF09578 Spore cortex protein YabQ (Spore_YabQ) DB29_01956 PF07873 YabP family DB29_01958 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_01959 PF00583 Acetyltransferase (GNAT) family DB29_01960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DB29_01960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DB29_01961 PF13419 Haloacid dehalogenase-like hydrolase DB29_01962 PF01479 S4 domain DB29_01963 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DB29_01963 PF03819 MazG nucleotide pyrophosphohydrolase domain DB29_01964 PF01943 Polysaccharide biosynthesis protein DB29_01964 PF14667 Polysaccharide biosynthesis C-terminal domain DB29_01966 PF03033 Glycosyltransferase family 28 N-terminal domain DB29_01966 PF04101 Glycosyltransferase family 28 C-terminal domain DB29_01968 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DB29_01968 PF15714 Stage V sporulation protein T C-terminal, transcription factor DB29_01969 PF17757 UvrB interaction domain DB29_01969 PF03461 TRCF domain DB29_01969 PF00271 Helicase conserved C-terminal domain DB29_01969 PF00270 DEAD/DEAH box helicase DB29_01969 PF02559 CarD-like/TRCF domain DB29_01970 PF10955 Protein of unknown function (DUF2757) DB29_01971 PF01195 Peptidyl-tRNA hydrolase DB29_01972 PF14693 Ribosomal protein TL5, C-terminal domain DB29_01972 PF01386 Ribosomal L25p family DB29_01973 PF14572 Phosphoribosyl synthetase-associated domain DB29_01973 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DB29_01974 PF12804 MobA-like NTP transferase domain DB29_01974 PF00132 Bacterial transferase hexapeptide (six repeats) DB29_01976 PF04026 SpoVG DB29_01977 PF01042 Endoribonuclease L-PSP DB29_01978 PF00156 Phosphoribosyl transferase domain DB29_01978 PF09182 Bacterial purine repressor, N-terminal DB29_01979 PF00288 GHMP kinases N terminal domain DB29_01979 PF08544 GHMP kinases C terminal DB29_01980 PF00269 Small, acid-soluble spore proteins, alpha/beta type DB29_01981 PF06257 Biofilm formation stimulator VEG DB29_01982 PF05582 YabG peptidase U57 DB29_01983 PF00398 Ribosomal RNA adenine dimethylase DB29_01984 PF13662 Toprim domain DB29_01984 PF13331 Domain of unknown function (DUF4093) DB29_01985 PF07501 G5 domain DB29_01985 PF03990 G5-linked-Ubiquitin-like domain DB29_01985 PF06725 3D domain DB29_01986 PF01026 TatD related DNase DB29_01990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_01990 PF00582 Universal stress protein family DB29_01990 PF02702 Osmosensitive K+ channel His kinase sensor domain DB29_01990 PF00512 His Kinase A (phospho-acceptor) domain DB29_01990 PF13493 Domain of unknown function (DUF4118) DB29_01991 PF12848 ABC transporter DB29_01991 PF16326 ABC transporter C-terminal domain DB29_01991 PF00005 ABC transporter DB29_01993 PF00544 Pectate lyase DB29_01995 PF09334 tRNA synthetases class I (M) DB29_01995 PF01588 Putative tRNA binding domain DB29_01995 PF08264 Anticodon-binding domain of tRNA DB29_01998 PF18277 AbrB C-terminal domain DB29_01998 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DB29_01999 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DB29_02000 PF01541 GIY-YIG catalytic domain DB29_02001 PF05175 Methyltransferase small domain DB29_02002 PF06156 Initiation control protein YabA DB29_02003 PF04468 PSP1 C-terminal conserved region DB29_02004 PF09115 DNA polymerase III, delta subunit, C terminal DB29_02005 PF06153 Cyclic-di-AMP receptor DB29_02006 PF02223 Thymidylate kinase DB29_02007 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DB29_02007 PF01276 Orn/Lys/Arg decarboxylase, major domain DB29_02010 PF00171 Aldehyde dehydrogenase family DB29_02011 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02011 PF00107 Zinc-binding dehydrogenase DB29_02012 PF02954 Bacterial regulatory protein, Fis family DB29_02012 PF00072 Response regulator receiver domain DB29_02012 PF00158 Sigma-54 interaction domain DB29_02013 PF13188 PAS domain DB29_02013 PF00072 Response regulator receiver domain DB29_02013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02013 PF00512 His Kinase A (phospho-acceptor) domain DB29_02013 PF08448 PAS fold DB29_02015 PF00465 Iron-containing alcohol dehydrogenase DB29_02017 PF10704 Protein of unknown function (DUF2508) DB29_02018 PF02132 RecR protein DB29_02018 PF13662 Toprim domain DB29_02019 PF02575 YbaB/EbfC DNA-binding family DB29_02020 PF12169 DNA polymerase III subunits gamma and tau domain III DB29_02022 PF00574 Clp protease DB29_02023 PF14437 MafB19-like deaminase DB29_02024 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_02027 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_02027 PF00005 ABC transporter DB29_02028 PF00005 ABC transporter DB29_02028 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_02029 PF00005 ABC transporter DB29_02030 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02031 PF00497 Bacterial extracellular solute-binding proteins, family 3 DB29_02033 PF00171 Aldehyde dehydrogenase family DB29_02034 PF03447 Homoserine dehydrogenase, NAD binding domain DB29_02034 PF00742 Homoserine dehydrogenase DB29_02035 PF01546 Peptidase family M20/M25/M40 DB29_02035 PF07687 Peptidase dimerisation domain DB29_02036 PF01053 Cys/Met metabolism PLP-dependent enzyme DB29_02037 PF00557 Metallopeptidase family M24 DB29_02037 PF01321 Creatinase/Prolidase N-terminal domain DB29_02040 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DB29_02040 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DB29_02041 PF00202 Aminotransferase class-III DB29_02042 PF02954 Bacterial regulatory protein, Fis family DB29_02042 PF13426 PAS domain DB29_02042 PF00158 Sigma-54 interaction domain DB29_02043 PF13556 PucR C-terminal helix-turn-helix domain DB29_02043 PF07905 Purine catabolism regulatory protein-like family DB29_02043 PF17853 GGDEF-like domain DB29_02044 PF00795 Carbon-nitrogen hydrolase DB29_02045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DB29_02045 PF02403 Seryl-tRNA synthetase N-terminal domain DB29_02046 PF07943 Penicillin-binding protein 5, C-terminal domain DB29_02046 PF00768 D-alanyl-D-alanine carboxypeptidase DB29_02047 PF00478 IMP dehydrogenase / GMP reductase domain DB29_02047 PF00571 CBS domain DB29_02048 PF14175 YaaC-like Protein DB29_02050 PF01569 PAP2 superfamily DB29_02053 PF03989 DNA gyrase C-terminal domain, beta-propeller DB29_02053 PF00521 DNA gyrase/topoisomerase IV, subunit A DB29_02054 PF00986 DNA gyrase B subunit, carboxyl terminus DB29_02054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02054 PF00204 DNA gyrase B DB29_02054 PF01751 Toprim domain DB29_02055 PF04025 Domain of unknown function (DUF370) DB29_02056 PF02463 RecF/RecN/SMC N terminal domain DB29_02058 PF02768 DNA polymerase III beta subunit, C-terminal domain DB29_02058 PF02767 DNA polymerase III beta subunit, central domain DB29_02058 PF00712 DNA polymerase III beta subunit, N-terminal domain DB29_02059 PF11638 DnaA N-terminal domain DB29_02059 PF08299 Bacterial dnaA protein helix-turn-helix DB29_02059 PF00308 Bacterial dnaA protein DB29_02060 PF00468 Ribosomal protein L34 DB29_02061 PF00825 Ribonuclease P DB29_02062 PF02096 60Kd inner membrane protein DB29_02063 PF14804 Jag N-terminus DB29_02063 PF01424 R3H domain DB29_02065 PF12631 MnmE helical domain DB29_02065 PF10396 GTP-binding protein TrmE N-terminus DB29_02065 PF01926 50S ribosome-binding GTPase DB29_02066 PF01134 Glucose inhibited division protein A DB29_02066 PF13932 GidA associated domain DB29_02067 PF02527 rRNA small subunit methyltransferase G DB29_02068 PF17762 HTH domain found in ParB protein DB29_02068 PF02195 ParB-like nuclease domain DB29_02069 PF13614 AAA domain DB29_02070 PF02195 ParB-like nuclease domain DB29_02070 PF17762 HTH domain found in ParB protein DB29_02071 PF00266 Aminotransferase class-V DB29_02072 PF06866 Protein of unknown function (DUF1256) DB29_02074 PF06107 Bacterial protein of unknown function (DUF951) DB29_02075 PF06071 Protein of unknown function (DUF933) DB29_02075 PF01926 50S ribosome-binding GTPase DB29_02076 PF01250 Ribosomal protein S6 DB29_02077 PF00436 Single-strand binding protein family DB29_02078 PF01084 Ribosomal protein S18 DB29_02080 PF01368 DHH family DB29_02080 PF02272 DHHA1 domain DB29_02081 PF03948 Ribosomal protein L9, C-terminal domain DB29_02081 PF01281 Ribosomal protein L9, N-terminal domain DB29_02082 PF00772 DnaB-like helicase N terminal domain DB29_02082 PF03796 DnaB-like helicase C terminal domain DB29_02083 PF00709 Adenylosuccinate synthetase DB29_02084 PF00486 Transcriptional regulatory protein, C terminal DB29_02084 PF00072 Response regulator receiver domain DB29_02085 PF13426 PAS domain DB29_02085 PF00512 His Kinase A (phospho-acceptor) domain DB29_02085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02085 PF00672 HAMP domain DB29_02087 PF09648 YycH protein DB29_02088 PF00753 Metallo-beta-lactamase superfamily DB29_02089 PF13180 PDZ domain DB29_02090 PF02590 Predicted SPOUT methyltransferase DB29_02094 PF17042 Nucleotide-binding C-terminal domain DB29_02094 PF07005 Sugar-binding N-terminal domain DB29_02095 PF00392 Bacterial regulatory proteins, gntR family DB29_02095 PF07729 FCD domain DB29_02096 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02096 PF00107 Zinc-binding dehydrogenase DB29_02097 PF03480 Bacterial extracellular solute-binding protein, family 7 DB29_02098 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DB29_02099 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_02100 PF00596 Class II Aldolase and Adducin N-terminal domain DB29_02102 PF00158 Sigma-54 interaction domain DB29_02102 PF00874 PRD domain DB29_02102 PF03610 PTS system fructose IIA component DB29_02103 PF01380 SIS domain DB29_02104 PF03613 PTS system mannose/fructose/sorbose family IID component DB29_02106 PF03830 PTS system sorbose subfamily IIB component DB29_02108 PF00005 ABC transporter DB29_02114 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_02115 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02116 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_02117 PF00005 ABC transporter DB29_02118 PF00005 ABC transporter DB29_02118 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_02122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02122 PF07694 5TMR of 5TMR-LYT DB29_02122 PF06580 Histidine kinase DB29_02123 PF04397 LytTr DNA-binding domain DB29_02123 PF00072 Response regulator receiver domain DB29_02124 PF02554 Carbon starvation protein CstA DB29_02129 PF04542 Sigma-70 region 2 DB29_02129 PF08281 Sigma-70, region 4 DB29_02131 PF02743 Cache domain DB29_02131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DB29_02131 PF00672 HAMP domain DB29_02132 PF02615 Malate/L-lactate dehydrogenase DB29_02133 PF00392 Bacterial regulatory proteins, gntR family DB29_02133 PF07729 FCD domain DB29_02134 PF03480 Bacterial extracellular solute-binding protein, family 7 DB29_02136 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_02137 PF00285 Citrate synthase, C-terminal domain DB29_02138 PF03466 LysR substrate binding domain DB29_02138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_02141 PF07729 FCD domain DB29_02141 PF00392 Bacterial regulatory proteins, gntR family DB29_02142 PF00392 Bacterial regulatory proteins, gntR family DB29_02142 PF07729 FCD domain DB29_02143 PF01565 FAD binding domain DB29_02143 PF02913 FAD linked oxidases, C-terminal domain DB29_02144 PF02754 Cysteine-rich domain DB29_02144 PF13183 4Fe-4S dicluster domain DB29_02145 PF01266 FAD dependent oxidoreductase DB29_02146 PF17853 GGDEF-like domain DB29_02146 PF07905 Purine catabolism regulatory protein-like family DB29_02146 PF13556 PucR C-terminal helix-turn-helix domain DB29_02147 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DB29_02148 PF07969 Amidohydrolase family DB29_02149 PF00128 Alpha amylase, catalytic domain DB29_02149 PF02903 Alpha amylase, N-terminal ig-like domain DB29_02149 PF16657 Maltogenic Amylase, C-terminal domain DB29_02150 PF13416 Bacterial extracellular solute-binding protein DB29_02151 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02152 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02153 PF00356 Bacterial regulatory proteins, lacI family DB29_02154 PF02667 Short chain fatty acid transporter DB29_02155 PF01144 Coenzyme A transferase DB29_02156 PF01144 Coenzyme A transferase DB29_02157 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DB29_02158 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DB29_02159 PF01048 Phosphorylase superfamily DB29_02160 PF07683 Cobalamin synthesis protein cobW C-terminal domain DB29_02160 PF02492 CobW/HypB/UreG, nucleotide-binding domain DB29_02161 PF00253 Ribosomal protein S14p/S29e DB29_02162 PF01713 Smr domain DB29_02162 PF00488 MutS domain V DB29_02163 PF02645 Uncharacterised protein, DegV family COG1307 DB29_02172 PF07690 Major Facilitator Superfamily DB29_02175 PF00486 Transcriptional regulatory protein, C terminal DB29_02175 PF00072 Response regulator receiver domain DB29_02176 PF18698 Histidine kinase sensor domain DB29_02176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02176 PF00512 His Kinase A (phospho-acceptor) domain DB29_02176 PF00672 HAMP domain DB29_02179 PF01329 Pterin 4 alpha carbinolamine dehydratase DB29_02180 PF00209 Sodium:neurotransmitter symporter family DB29_02181 PF13847 Methyltransferase domain DB29_02181 PF03551 Transcriptional regulator PadR-like family DB29_02186 PF05525 Branched-chain amino acid transport protein DB29_02188 PF01156 Inosine-uridine preferring nucleoside hydrolase DB29_02190 PF00293 NUDIX domain DB29_02191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02191 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DB29_02191 PF00989 PAS fold DB29_02191 PF17203 Single cache domain 3 DB29_02192 PF00072 Response regulator receiver domain DB29_02193 PF00939 Sodium:sulfate symporter transmembrane region DB29_02194 PF12857 TOBE-like domain DB29_02194 PF17850 CysA C-terminal regulatory domain DB29_02194 PF00005 ABC transporter DB29_02197 PF06580 Histidine kinase DB29_02197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02201 PF01872 RibD C-terminal domain DB29_02201 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DB29_02210 PF06445 GyrI-like small molecule binding domain DB29_02212 PF03129 Anticodon binding domain DB29_02212 PF02824 TGS domain DB29_02212 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DB29_02212 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DB29_02213 PF04229 GrpB protein DB29_02214 PF10026 Predicted Zn-dependent protease (DUF2268) DB29_02215 PF13411 MerR HTH family regulatory protein DB29_02215 PF07739 TipAS antibiotic-recognition domain DB29_02217 PF00781 Diacylglycerol kinase catalytic domain DB29_02218 PF04239 Protein of unknown function (DUF421) DB29_02219 PF01613 Flavin reductase like domain DB29_02220 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DB29_02220 PF01565 FAD binding domain DB29_02221 PF00664 ABC transporter transmembrane region DB29_02221 PF00005 ABC transporter DB29_02222 PF06628 Catalase-related immune-responsive DB29_02222 PF00199 Catalase DB29_02224 PF07690 Major Facilitator Superfamily DB29_02225 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DB29_02225 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DB29_02225 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DB29_02226 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DB29_02226 PF00672 HAMP domain DB29_02226 PF02743 Cache domain DB29_02228 PF01546 Peptidase family M20/M25/M40 DB29_02228 PF07687 Peptidase dimerisation domain DB29_02231 PF01297 Zinc-uptake complex component A periplasmic DB29_02232 PF00005 ABC transporter DB29_02233 PF00950 ABC 3 transport family DB29_02234 PF00950 ABC 3 transport family DB29_02236 PF11181 Heat induced stress protein YflT DB29_02237 PF12823 Domain of unknown function (DUF3817) DB29_02238 PF10672 S-adenosylmethionine-dependent methyltransferase DB29_02238 PF17785 PUA-like domain DB29_02239 PF01131 DNA topoisomerase DB29_02239 PF01751 Toprim domain DB29_02240 PF00245 Alkaline phosphatase DB29_02242 PF00557 Metallopeptidase family M24 DB29_02243 PF15975 Flotillin DB29_02243 PF01145 SPFH domain / Band 7 family DB29_02246 PF01266 FAD dependent oxidoreductase DB29_02246 PF00355 Rieske [2Fe-2S] domain DB29_02247 PF02600 Disulfide bond formation protein DsbB DB29_02248 PF00085 Thioredoxin DB29_02250 PF00271 Helicase conserved C-terminal domain DB29_02250 PF00270 DEAD/DEAH box helicase DB29_02253 PF00120 Glutamine synthetase, catalytic domain DB29_02253 PF03951 Glutamine synthetase, beta-Grasp domain DB29_02255 PF01053 Cys/Met metabolism PLP-dependent enzyme DB29_02257 PF00155 Aminotransferase class I and II DB29_02257 PF00392 Bacterial regulatory proteins, gntR family DB29_02260 PF00221 Aromatic amino acid lyase DB29_02261 PF08543 Phosphomethylpyrimidine kinase DB29_02263 PF03167 Uracil DNA glycosylase superfamily DB29_02265 PF00909 Ammonium Transporter Family DB29_02270 PF00474 Sodium:solute symporter family DB29_02271 PF00583 Acetyltransferase (GNAT) family DB29_02272 PF04241 Protein of unknown function (DUF423) DB29_02273 PF09671 Spore coat protein (Spore_GerQ) DB29_02274 PF07486 Cell Wall Hydrolase DB29_02276 PF00392 Bacterial regulatory proteins, gntR family DB29_02277 PF00005 ABC transporter DB29_02278 PF13732 Domain of unknown function (DUF4162) DB29_02278 PF00005 ABC transporter DB29_02283 PF00378 Enoyl-CoA hydratase/isomerase DB29_02284 PF01515 Phosphate acetyl/butaryl transferase DB29_02285 PF03099 Biotin/lipoate A/B protein ligase family DB29_02287 PF00375 Sodium:dicarboxylate symporter family DB29_02288 PF01966 HD domain DB29_02291 PF01361 Tautomerase enzyme DB29_02292 PF04203 Sortase domain DB29_02295 PF08741 YwhD family DB29_02297 PF08439 Oligopeptidase F DB29_02297 PF01432 Peptidase family M3 DB29_02299 PF00905 Penicillin binding protein transpeptidase domain DB29_02299 PF00912 Transglycosylase DB29_02300 PF17284 Spermidine synthase tetramerisation domain DB29_02301 PF00491 Arginase family DB29_02304 PF03485 Arginyl tRNA synthetase N terminal domain DB29_02304 PF05746 DALR anticodon binding domain DB29_02304 PF00750 tRNA synthetases class I (R) DB29_02305 PF04306 Protein of unknown function (DUF456) DB29_02306 PF13091 PLD-like domain DB29_02307 PF13183 4Fe-4S dicluster domain DB29_02307 PF02754 Cysteine-rich domain DB29_02308 PF02803 Thiolase, C-terminal domain DB29_02308 PF00108 Thiolase, N-terminal domain DB29_02309 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DB29_02309 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DB29_02310 PF02770 Acyl-CoA dehydrogenase, middle domain DB29_02310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DB29_02310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DB29_02312 PF05066 HB1, ASXL, restriction endonuclease HTH domain DB29_02313 PF06418 CTP synthase N-terminus DB29_02313 PF00117 Glutamine amidotransferase class-I DB29_02315 PF00072 Response regulator receiver domain DB29_02316 PF01116 Fructose-bisphosphate aldolase class-II DB29_02317 PF00923 Transaldolase/Fructose-6-phosphate aldolase DB29_02318 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DB29_02319 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DB29_02320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DB29_02320 PF07497 Rho termination factor, RNA-binding domain DB29_02320 PF07498 Rho termination factor, N-terminal domain DB29_02321 PF01197 Ribosomal protein L31 DB29_02322 PF00265 Thymidine kinase DB29_02324 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_02324 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DB29_02325 PF03462 PCRF domain DB29_02325 PF00472 RF-1 domain DB29_02326 PF13847 Methyltransferase domain DB29_02326 PF17827 PrmC N-terminal domain DB29_02327 PF09551 Stage II sporulation protein R (spore_II_R) DB29_02329 PF03481 Putative GTP-binding controlling metal-binding DB29_02329 PF01300 Telomere recombination DB29_02331 PF02659 Putative manganese efflux pump DB29_02332 PF01451 Low molecular weight phosphotyrosine protein phosphatase DB29_02333 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DB29_02334 PF02502 Ribose/Galactose Isomerase DB29_02335 PF04260 Protein of unknown function (DUF436) DB29_02336 PF00464 Serine hydroxymethyltransferase DB29_02338 PF00583 Acetyltransferase (GNAT) family DB29_02339 PF02225 PA domain DB29_02339 PF05922 Peptidase inhibitor I9 DB29_02339 PF13860 FlgD Ig-like domain DB29_02339 PF00082 Subtilase family DB29_02342 PF00119 ATP synthase A chain DB29_02343 PF00137 ATP synthase subunit C DB29_02344 PF00430 ATP synthase B/B' CF(0) DB29_02345 PF00213 ATP synthase delta (OSCP) subunit DB29_02346 PF02874 ATP synthase alpha/beta family, beta-barrel domain DB29_02346 PF00306 ATP synthase alpha/beta chain, C terminal domain DB29_02346 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DB29_02347 PF00231 ATP synthase DB29_02348 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DB29_02348 PF02874 ATP synthase alpha/beta family, beta-barrel domain DB29_02349 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DB29_02349 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DB29_02352 PF08680 TATA-box binding DB29_02353 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DB29_02354 PF08486 Stage II sporulation protein DB29_02355 PF01551 Peptidase family M23 DB29_02356 PF00893 Small Multidrug Resistance protein DB29_02357 PF00893 Small Multidrug Resistance protein DB29_02358 PF12116 Stage III sporulation protein D DB29_02360 PF00460 Flagella basal body rod protein DB29_02360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DB29_02361 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DB29_02361 PF00460 Flagella basal body rod protein DB29_02362 PF11772 DNA-directed RNA polymerase subunit beta DB29_02363 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_02364 PF03845 Spore germination protein DB29_02365 PF05504 Spore germination B3/ GerAC like, C-terminal DB29_02366 PF02525 Flavodoxin-like fold DB29_02368 PF07977 FabA-like domain DB29_02369 PF01061 ABC-2 type transporter DB29_02371 PF05163 DinB family DB29_02373 PF00877 NlpC/P60 family DB29_02373 PF01476 LysM domain DB29_02374 PF00817 impB/mucB/samB family DB29_02374 PF11799 impB/mucB/samB family C-terminal domain DB29_02376 PF14542 GCN5-related N-acetyl-transferase DB29_02377 PF03816 Cell envelope-related transcriptional attenuator domain DB29_02379 PF16363 GDP-mannose 4,6 dehydratase DB29_02380 PF01098 Cell cycle protein DB29_02383 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DB29_02385 PF03816 Cell envelope-related transcriptional attenuator domain DB29_02386 PF13807 G-rich domain on putative tyrosine kinase DB29_02386 PF02706 Chain length determinant protein DB29_02387 PF13614 AAA domain DB29_02391 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DB29_02391 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DB29_02392 PF00171 Aldehyde dehydrogenase family DB29_02394 PF18801 response regulator aspartate phosphatase H, N terminal DB29_02411 PF00232 Glycosyl hydrolase family 1 DB29_02412 PF00874 PRD domain DB29_02412 PF03123 CAT RNA binding domain DB29_02413 PF03123 CAT RNA binding domain DB29_02413 PF00874 PRD domain DB29_02414 PF02378 Phosphotransferase system, EIIC DB29_02414 PF00367 phosphotransferase system, EIIB DB29_02414 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DB29_02416 PF02082 Transcriptional regulator DB29_02417 PF13460 NAD(P)H-binding DB29_02420 PF00202 Aminotransferase class-III DB29_02421 PF07687 Peptidase dimerisation domain DB29_02421 PF01546 Peptidase family M20/M25/M40 DB29_02423 PF01979 Amidohydrolase family DB29_02424 PF01180 Dihydroorotate dehydrogenase DB29_02425 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DB29_02425 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_02427 PF17760 UvrA interaction domain DB29_02427 PF17755 UvrA DNA-binding domain DB29_02427 PF00005 ABC transporter DB29_02429 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02430 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02431 PF01547 Bacterial extracellular solute-binding protein DB29_02432 PF02682 Carboxyltransferase domain, subdomain C and D DB29_02433 PF02626 Carboxyltransferase domain, subdomain A and B DB29_02434 PF01566 Natural resistance-associated macrophage protein DB29_02435 PF03746 LamB/YcsF family DB29_02436 PF13411 MerR HTH family regulatory protein DB29_02437 PF00881 Nitroreductase family DB29_02438 PF00356 Bacterial regulatory proteins, lacI family DB29_02438 PF13407 Periplasmic binding protein domain DB29_02439 PF00251 Glycosyl hydrolases family 32 N-terminal domain DB29_02439 PF08244 Glycosyl hydrolases family 32 C terminal DB29_02440 PF02378 Phosphotransferase system, EIIC DB29_02440 PF00367 phosphotransferase system, EIIB DB29_02442 PF00106 short chain dehydrogenase DB29_02445 PF03737 Aldolase/RraA DB29_02451 PF02082 Transcriptional regulator DB29_02452 PF01230 HIT domain DB29_02453 PF01497 Periplasmic binding protein DB29_02454 PF01032 FecCD transport family DB29_02455 PF00005 ABC transporter DB29_02456 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02458 PF00005 ABC transporter DB29_02459 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02461 PF13478 XdhC Rossmann domain DB29_02461 PF02625 XdhC and CoxI family DB29_02464 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DB29_02464 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DB29_02465 PF01799 [2Fe-2S] binding domain DB29_02465 PF00111 2Fe-2S iron-sulfur cluster binding domain DB29_02467 PF00266 Aminotransferase class-V DB29_02468 PF01546 Peptidase family M20/M25/M40 DB29_02469 PF13556 PucR C-terminal helix-turn-helix domain DB29_02469 PF07905 Purine catabolism regulatory protein-like family DB29_02469 PF17853 GGDEF-like domain DB29_02470 PF09349 OHCU decarboxylase DB29_02470 PF01014 Uricase DB29_02471 PF09349 OHCU decarboxylase DB29_02471 PF01014 Uricase DB29_02472 PF00576 HIUase/Transthyretin family DB29_02473 PF03606 C4-dicarboxylate anaerobic carrier DB29_02474 PF01979 Amidohydrolase family DB29_02475 PF01425 Amidase DB29_02476 PF09844 Uncharacterized conserved protein (COG2071) DB29_02477 PF10710 Protein of unknown function (DUF2512) DB29_02478 PF11553 Protein of unknown function (DUF3231) DB29_02480 PF10503 Esterase PHB depolymerase DB29_02481 PF00679 Elongation factor G C-terminus DB29_02481 PF14492 Elongation Factor G, domain II DB29_02481 PF03764 Elongation factor G, domain IV DB29_02481 PF00009 Elongation factor Tu GTP binding domain DB29_02486 PF01048 Phosphorylase superfamily DB29_02488 PF01965 DJ-1/PfpI family DB29_02490 PF00005 ABC transporter DB29_02491 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02495 PF07853 Protein of unknown function (DUF1648) DB29_02495 PF13630 SdpI/YhfL protein family DB29_02496 PF01022 Bacterial regulatory protein, arsR family DB29_02497 PF03466 LysR substrate binding domain DB29_02497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_02498 PF01596 O-methyltransferase DB29_02499 PF01235 Sodium:alanine symporter family DB29_02503 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DB29_02503 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_02504 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_02505 PF03845 Spore germination protein DB29_02506 PF05504 Spore germination B3/ GerAC like, C-terminal DB29_02507 PF18801 response regulator aspartate phosphatase H, N terminal DB29_02509 PF00669 Bacterial flagellin N-terminal helical region DB29_02509 PF00700 Bacterial flagellin C-terminal helical region DB29_02511 PF00483 Nucleotidyl transferase DB29_02512 PF02397 Bacterial sugar transferase DB29_02513 PF01943 Polysaccharide biosynthesis protein DB29_02518 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DB29_02520 PF00483 Nucleotidyl transferase DB29_02521 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DB29_02522 PF16363 GDP-mannose 4,6 dehydratase DB29_02523 PF04321 RmlD substrate binding domain DB29_02529 PF01965 DJ-1/PfpI family DB29_02529 PF12833 Helix-turn-helix domain DB29_02531 PF02525 Flavodoxin-like fold DB29_02532 PF01638 HxlR-like helix-turn-helix DB29_02540 PF01797 Transposase IS200 like DB29_02546 PF02056 Family 4 glycosyl hydrolase DB29_02546 PF11975 Family 4 glycosyl hydrolase C-terminal domain DB29_02548 PF02378 Phosphotransferase system, EIIC DB29_02549 PF02378 Phosphotransferase system, EIIC DB29_02549 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_02550 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DB29_02552 PF01869 BadF/BadG/BcrA/BcrD ATPase family DB29_02554 PF03466 LysR substrate binding domain DB29_02554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_02556 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_02557 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02558 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02558 PF12911 N-terminal TM domain of oligopeptide transport permease C DB29_02559 PF00005 ABC transporter DB29_02559 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_02560 PF00005 ABC transporter DB29_02560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_02561 PF01546 Peptidase family M20/M25/M40 DB29_02561 PF07687 Peptidase dimerisation domain DB29_02562 PF00939 Sodium:sulfate symporter transmembrane region DB29_02564 PF01546 Peptidase family M20/M25/M40 DB29_02569 PF00005 ABC transporter DB29_02569 PF08402 TOBE domain DB29_02570 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02571 PF06580 Histidine kinase DB29_02572 PF12833 Helix-turn-helix domain DB29_02572 PF00072 Response regulator receiver domain DB29_02573 PF18801 response regulator aspartate phosphatase H, N terminal DB29_02575 PF07722 Peptidase C26 DB29_02576 PF00294 pfkB family carbohydrate kinase DB29_02577 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02577 PF00512 His Kinase A (phospho-acceptor) domain DB29_02578 PF00486 Transcriptional regulatory protein, C terminal DB29_02578 PF00072 Response regulator receiver domain DB29_02579 PF00005 ABC transporter DB29_02588 PF16925 Tetracyclin repressor-like, C-terminal domain DB29_02588 PF00440 Bacterial regulatory proteins, tetR family DB29_02589 PF05726 Pirin C-terminal cupin domain DB29_02589 PF02678 Pirin DB29_02590 PF01638 HxlR-like helix-turn-helix DB29_02591 PF01979 Amidohydrolase family DB29_02593 PF04439 Streptomycin adenylyltransferase DB29_02594 PF05067 Manganese containing catalase DB29_02597 PF18801 response regulator aspartate phosphatase H, N terminal DB29_02599 PF03480 Bacterial extracellular solute-binding protein, family 7 DB29_02600 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DB29_02601 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_02604 PF13193 AMP-binding enzyme C-terminal domain DB29_02604 PF00501 AMP-binding enzyme DB29_02607 PF07690 Major Facilitator Superfamily DB29_02608 PF00107 Zinc-binding dehydrogenase DB29_02608 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02610 PF08220 DeoR-like helix-turn-helix domain DB29_02610 PF00455 DeoR C terminal sensor domain DB29_02611 PF02502 Ribose/Galactose Isomerase DB29_02612 PF02733 Dak1 domain DB29_02613 PF02734 DAK2 domain DB29_02613 PF02733 Dak1 domain DB29_02614 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DB29_02615 PF00701 Dihydrodipicolinate synthetase family DB29_02618 PF01970 Tripartite tricarboxylate transporter TctA family DB29_02619 PF00294 pfkB family carbohydrate kinase DB29_02620 PF00356 Bacterial regulatory proteins, lacI family DB29_02621 PF05360 yiaA/B two helix domain DB29_02624 PF02028 BCCT, betaine/carnitine/choline family transporter DB29_02632 PF01177 Asp/Glu/Hydantoin racemase DB29_02635 PF00072 Response regulator receiver domain DB29_02635 PF12833 Helix-turn-helix domain DB29_02636 PF00672 HAMP domain DB29_02636 PF06580 Histidine kinase DB29_02636 PF02743 Cache domain DB29_02636 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02637 PF13416 Bacterial extracellular solute-binding protein DB29_02639 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02640 PF13932 GidA associated domain DB29_02640 PF01134 Glucose inhibited division protein A DB29_02642 PF11975 Family 4 glycosyl hydrolase C-terminal domain DB29_02642 PF02056 Family 4 glycosyl hydrolase DB29_02643 PF00367 phosphotransferase system, EIIB DB29_02643 PF02378 Phosphotransferase system, EIIC DB29_02644 PF01380 SIS domain DB29_02644 PF01418 Helix-turn-helix domain, rpiR family DB29_02650 PF00455 DeoR C terminal sensor domain DB29_02650 PF08220 DeoR-like helix-turn-helix domain DB29_02652 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_02653 PF03611 PTS system sugar-specific permease component DB29_02654 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02654 PF00107 Zinc-binding dehydrogenase DB29_02655 PF01116 Fructose-bisphosphate aldolase class-II DB29_02658 PF18801 response regulator aspartate phosphatase H, N terminal DB29_02660 PF11188 Protein of unknown function (DUF2975) DB29_02661 PF13443 Cro/C1-type HTH DNA-binding domain DB29_02662 PF05675 Protein of unknown function (DUF817) DB29_02663 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DB29_02663 PF00391 PEP-utilising enzyme, mobile domain DB29_02665 PF03466 LysR substrate binding domain DB29_02665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_02666 PF01925 Sulfite exporter TauE/SafE DB29_02667 PF02743 Cache domain DB29_02667 PF00672 HAMP domain DB29_02667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02667 PF06580 Histidine kinase DB29_02668 PF12833 Helix-turn-helix domain DB29_02668 PF00072 Response regulator receiver domain DB29_02672 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02673 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02675 PF01255 Putative undecaprenyl diphosphate synthase DB29_02678 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DB29_02678 PF13378 Enolase C-terminal domain-like DB29_02679 PF02378 Phosphotransferase system, EIIC DB29_02679 PF00367 phosphotransferase system, EIIB DB29_02679 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DB29_02682 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02682 PF06580 Histidine kinase DB29_02683 PF00072 Response regulator receiver domain DB29_02683 PF04397 LytTr DNA-binding domain DB29_02685 PF04203 Sortase domain DB29_02687 PF01381 Helix-turn-helix DB29_02692 PF00005 ABC transporter DB29_02692 PF00664 ABC transporter transmembrane region DB29_02694 PF04738 Lantibiotic dehydratase, N terminus DB29_02694 PF14028 Lantibiotic biosynthesis dehydratase C-term DB29_02695 PF05147 Lanthionine synthetase C-like protein DB29_02696 PF02441 Flavoprotein DB29_02697 PF00005 ABC transporter DB29_02700 PF00486 Transcriptional regulatory protein, C terminal DB29_02700 PF00072 Response regulator receiver domain DB29_02701 PF00512 His Kinase A (phospho-acceptor) domain DB29_02701 PF00672 HAMP domain DB29_02701 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02706 PF00459 Inositol monophosphatase family DB29_02713 PF01156 Inosine-uridine preferring nucleoside hydrolase DB29_02714 PF00356 Bacterial regulatory proteins, lacI family DB29_02715 PF00294 pfkB family carbohydrate kinase DB29_02716 PF05025 RbsD / FucU transport protein family DB29_02717 PF00005 ABC transporter DB29_02718 PF02653 Branched-chain amino acid transport system / permease component DB29_02719 PF13407 Periplasmic binding protein domain DB29_02722 PF00106 short chain dehydrogenase DB29_02728 PF01476 LysM domain DB29_02728 PF03734 L,D-transpeptidase catalytic domain DB29_02729 PF05139 Erythromycin esterase DB29_02730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DB29_02730 PF00672 HAMP domain DB29_02730 PF02743 Cache domain DB29_02734 PF12833 Helix-turn-helix domain DB29_02735 PF00005 ABC transporter DB29_02737 PF01978 Sugar-specific transcriptional regulator TrmB DB29_02737 PF11495 Archaeal transcriptional regulator TrmB DB29_02738 PF00892 EamA-like transporter family DB29_02742 PF00356 Bacterial regulatory proteins, lacI family DB29_02743 PF13416 Bacterial extracellular solute-binding protein DB29_02744 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02745 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02746 PF07745 Glycosyl hydrolase family 53 DB29_02747 PF02449 Beta-galactosidase DB29_02747 PF08533 Beta-galactosidase C-terminal domain DB29_02747 PF08532 Beta-galactosidase trimerisation domain DB29_02748 PF18801 response regulator aspartate phosphatase H, N terminal DB29_02750 PF07687 Peptidase dimerisation domain DB29_02750 PF01546 Peptidase family M20/M25/M40 DB29_02751 PF02142 MGS-like domain DB29_02751 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DB29_02751 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DB29_02752 PF13411 MerR HTH family regulatory protein DB29_02754 PF00398 Ribosomal RNA adenine dimethylase DB29_02756 PF01965 DJ-1/PfpI family DB29_02757 PF01116 Fructose-bisphosphate aldolase class-II DB29_02758 PF03611 PTS system sugar-specific permease component DB29_02760 PF00365 Phosphofructokinase DB29_02761 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_02765 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02766 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02767 PF01547 Bacterial extracellular solute-binding protein DB29_02768 PF00005 ABC transporter DB29_02769 PF02687 FtsX-like permease family DB29_02771 PF03845 Spore germination protein DB29_02772 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_02774 PF05721 Phytanoyl-CoA dioxygenase (PhyH) DB29_02776 PF01497 Periplasmic binding protein DB29_02776 PF12833 Helix-turn-helix domain DB29_02777 PF01497 Periplasmic binding protein DB29_02778 PF01032 FecCD transport family DB29_02779 PF01032 FecCD transport family DB29_02780 PF00756 Putative esterase DB29_02781 PF07687 Peptidase dimerisation domain DB29_02781 PF01546 Peptidase family M20/M25/M40 DB29_02783 PF00905 Penicillin binding protein transpeptidase domain DB29_02786 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DB29_02786 PF02743 Cache domain DB29_02786 PF00672 HAMP domain DB29_02787 PF00356 Bacterial regulatory proteins, lacI family DB29_02788 PF00248 Aldo/keto reductase family DB29_02789 PF01497 Periplasmic binding protein DB29_02790 PF12833 Helix-turn-helix domain DB29_02792 PF00356 Bacterial regulatory proteins, lacI family DB29_02793 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_02793 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_02795 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02796 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02797 PF01261 Xylose isomerase-like TIM barrel DB29_02800 PF00196 Bacterial regulatory proteins, luxR family DB29_02800 PF00072 Response regulator receiver domain DB29_02805 PF08245 Mur ligase middle domain DB29_02805 PF02875 Mur ligase family, glutamate ligase domain DB29_02805 PF01225 Mur ligase family, catalytic domain DB29_02806 PF01740 STAS domain DB29_02807 PF00440 Bacterial regulatory proteins, tetR family DB29_02807 PF13977 BetI-type transcriptional repressor, C-terminal DB29_02811 PF04294 VanW like protein DB29_02813 PF02586 SOS response associated peptidase (SRAP) DB29_02819 PF10431 C-terminal, D2-small domain, of ClpB protein DB29_02819 PF17871 AAA lid domain DB29_02819 PF07724 AAA domain (Cdc48 subfamily) DB29_02819 PF00004 ATPase family associated with various cellular activities (AAA) DB29_02820 PF01520 N-acetylmuramoyl-L-alanine amidase DB29_02826 PF08863 YolD-like protein DB29_02828 PF04235 Protein of unknown function (DUF418) DB29_02829 PF00480 ROK family DB29_02829 PF01325 Iron dependent repressor, N-terminal DNA binding domain DB29_02830 PF01547 Bacterial extracellular solute-binding protein DB29_02831 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02832 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02833 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_02833 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_02834 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_02834 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_02836 PF00561 alpha/beta hydrolase fold DB29_02837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_02837 PF03466 LysR substrate binding domain DB29_02839 PF07690 Major Facilitator Superfamily DB29_02840 PF07690 Major Facilitator Superfamily DB29_02841 PF00440 Bacterial regulatory proteins, tetR family DB29_02841 PF16859 Tetracyclin repressor-like, C-terminal domain DB29_02842 PF01209 ubiE/COQ5 methyltransferase family DB29_02843 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02843 PF00107 Zinc-binding dehydrogenase DB29_02843 PF13823 Alcohol dehydrogenase GroES-associated DB29_02844 PF01497 Periplasmic binding protein DB29_02845 PF01032 FecCD transport family DB29_02846 PF03992 Antibiotic biosynthesis monooxygenase DB29_02847 PF05031 Iron Transport-associated domain DB29_02848 PF05031 Iron Transport-associated domain DB29_02849 PF01497 Periplasmic binding protein DB29_02850 PF01032 FecCD transport family DB29_02851 PF00005 ABC transporter DB29_02852 PF04203 Sortase domain DB29_02854 PF01595 Cyclin M transmembrane N-terminal domain DB29_02854 PF00571 CBS domain DB29_02854 PF03471 Transporter associated domain DB29_02855 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DB29_02857 PF05067 Manganese containing catalase DB29_02858 PF00753 Metallo-beta-lactamase superfamily DB29_02859 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02859 PF00107 Zinc-binding dehydrogenase DB29_02859 PF13823 Alcohol dehydrogenase GroES-associated DB29_02861 PF02602 Uroporphyrinogen-III synthase HemD DB29_02864 PF00005 ABC transporter DB29_02867 PF00440 Bacterial regulatory proteins, tetR family DB29_02869 PF00873 AcrB/AcrD/AcrF family DB29_02871 PF00269 Small, acid-soluble spore proteins, alpha/beta type DB29_02872 PF00269 Small, acid-soluble spore proteins, alpha/beta type DB29_02873 PF04239 Protein of unknown function (DUF421) DB29_02875 PF03466 LysR substrate binding domain DB29_02875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_02876 PF03358 NADPH-dependent FMN reductase DB29_02879 PF00005 ABC transporter DB29_02880 PF00296 Luciferase-like monooxygenase DB29_02881 PF09084 NMT1/THI5 like DB29_02882 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02883 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DB29_02883 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DB29_02884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_02884 PF03466 LysR substrate binding domain DB29_02885 PF01022 Bacterial regulatory protein, arsR family DB29_02886 PF16916 Dimerisation domain of Zinc Transporter DB29_02886 PF01545 Cation efflux family DB29_02887 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DB29_02887 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DB29_02888 PF00080 Copper/zinc superoxide dismutase (SODC) DB29_02891 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DB29_02891 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DB29_02892 PF00230 Major intrinsic protein DB29_02894 PF00356 Bacterial regulatory proteins, lacI family DB29_02902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02902 PF07730 Histidine kinase DB29_02902 PF00672 HAMP domain DB29_02903 PF00072 Response regulator receiver domain DB29_02903 PF00196 Bacterial regulatory proteins, luxR family DB29_02904 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02906 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DB29_02908 PF04616 Glycosyl hydrolases family 43 DB29_02908 PF16369 C-terminal lipocalin-like domain DB29_02909 PF00690 Cation transporter/ATPase, N-terminus DB29_02909 PF00689 Cation transporting ATPase, C-terminus DB29_02912 PF01061 ABC-2 type transporter DB29_02913 PF00005 ABC transporter DB29_02914 PF03819 MazG nucleotide pyrophosphohydrolase domain DB29_02919 PF03551 Transcriptional regulator PadR-like family DB29_02920 PF00356 Bacterial regulatory proteins, lacI family DB29_02923 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DB29_02924 PF01380 SIS domain DB29_02925 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DB29_02926 PF00294 pfkB family carbohydrate kinase DB29_02927 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DB29_02932 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_02933 PF03611 PTS system sugar-specific permease component DB29_02934 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02934 PF00107 Zinc-binding dehydrogenase DB29_02936 PF08240 Alcohol dehydrogenase GroES-like domain DB29_02936 PF00107 Zinc-binding dehydrogenase DB29_02939 PF07563 Protein of unknown function (DUF1541) DB29_02940 PF17676 LD-carboxypeptidase C-terminal domain DB29_02940 PF02016 LD-carboxypeptidase N-terminal domain DB29_02941 PF00367 phosphotransferase system, EIIB DB29_02941 PF02378 Phosphotransferase system, EIIC DB29_02942 PF00874 PRD domain DB29_02942 PF03123 CAT RNA binding domain DB29_02944 PF00196 Bacterial regulatory proteins, luxR family DB29_02944 PF00072 Response regulator receiver domain DB29_02945 PF07730 Histidine kinase DB29_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_02948 PF17391 Urocanase N-terminal domain DB29_02948 PF17392 Urocanase C-terminal domain DB29_02948 PF01175 Urocanase Rossmann-like domain DB29_02949 PF01979 Amidohydrolase family DB29_02950 PF01546 Peptidase family M20/M25/M40 DB29_02950 PF07687 Peptidase dimerisation domain DB29_02951 PF01979 Amidohydrolase family DB29_02956 PF18801 response regulator aspartate phosphatase H, N terminal DB29_02957 PF01966 HD domain DB29_02967 PF01966 HD domain DB29_02968 PF03129 Anticodon binding domain DB29_02968 PF13393 Histidyl-tRNA synthetase DB29_02970 PF04226 Transglycosylase associated protein DB29_02973 PF00583 Acetyltransferase (GNAT) family DB29_02977 PF01547 Bacterial extracellular solute-binding protein DB29_02978 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02979 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02981 PF01435 Peptidase family M48 DB29_02982 PF10026 Predicted Zn-dependent protease (DUF2268) DB29_02983 PF01520 N-acetylmuramoyl-L-alanine amidase DB29_02983 PF04122 Putative cell wall binding repeat 2 DB29_02985 PF00884 Sulfatase DB29_02986 PF00266 Aminotransferase class-V DB29_02987 PF02660 Glycerol-3-phosphate acyltransferase DB29_02988 PF11954 Domain of unknown function (DUF3471) DB29_02988 PF00144 Beta-lactamase DB29_02989 PF02567 Phenazine biosynthesis-like protein DB29_02991 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_02991 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_02992 PF02311 AraC-like ligand binding domain DB29_02992 PF12833 Helix-turn-helix domain DB29_02994 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_02994 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_02995 PF13416 Bacterial extracellular solute-binding protein DB29_02996 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02997 PF00528 Binding-protein-dependent transport system inner membrane component DB29_02999 PF06445 GyrI-like small molecule binding domain DB29_02999 PF12833 Helix-turn-helix domain DB29_03001 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_03001 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_03002 PF12833 Helix-turn-helix domain DB29_03003 PF07470 Glycosyl Hydrolase Family 88 DB29_03004 PF14785 Maltose transport system permease protein MalF P2 domain DB29_03004 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03005 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03010 PF13229 Right handed beta helix region DB29_03012 PF00440 Bacterial regulatory proteins, tetR family DB29_03012 PF17932 Tetracyclin repressor-like, C-terminal domain DB29_03019 PF00356 Bacterial regulatory proteins, lacI family DB29_03022 PF00501 AMP-binding enzyme DB29_03022 PF13193 AMP-binding enzyme C-terminal domain DB29_03024 PF01238 Phosphomannose isomerase type I DB29_03025 PF18801 response regulator aspartate phosphatase H, N terminal DB29_03027 PF02673 Bacitracin resistance protein BacA DB29_03028 PF11700 Vacuole effluxer Atg22 like DB29_03029 PF17853 GGDEF-like domain DB29_03029 PF05651 Putative sugar diacid recognition DB29_03029 PF13556 PucR C-terminal helix-turn-helix domain DB29_03030 PF01565 FAD binding domain DB29_03030 PF02913 FAD linked oxidases, C-terminal domain DB29_03031 PF02754 Cysteine-rich domain DB29_03031 PF13183 4Fe-4S dicluster domain DB29_03032 PF00005 ABC transporter DB29_03033 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03035 PF00583 Acetyltransferase (GNAT) family DB29_03036 PF01047 MarR family DB29_03040 PF00381 PTS HPr component phosphorylation site DB29_03043 PF03608 PTS system enzyme II sorbitol-specific factor DB29_03044 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DB29_03044 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DB29_03046 PF13936 Helix-turn-helix domain DB29_03046 PF04198 Putative sugar-binding domain DB29_03048 PF00403 Heavy-metal-associated domain DB29_03050 PF02687 FtsX-like permease family DB29_03051 PF00005 ABC transporter DB29_03052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_03053 PF00072 Response regulator receiver domain DB29_03053 PF00486 Transcriptional regulatory protein, C terminal DB29_03055 PF00480 ROK family DB29_03056 PF01546 Peptidase family M20/M25/M40 DB29_03057 PF07690 Major Facilitator Superfamily DB29_03058 PF04072 Leucine carboxyl methyltransferase DB29_03059 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DB29_03059 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DB29_03060 PF00288 GHMP kinases N terminal domain DB29_03060 PF08544 GHMP kinases C terminal DB29_03060 PF10509 Galactokinase galactose-binding signature DB29_03061 PF00455 DeoR C terminal sensor domain DB29_03061 PF08220 DeoR-like helix-turn-helix domain DB29_03062 PF00884 Sulfatase DB29_03063 PF00478 IMP dehydrogenase / GMP reductase domain DB29_03065 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03071 PF13382 Adenine deaminase C-terminal domain DB29_03071 PF01979 Amidohydrolase family DB29_03073 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03074 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03075 PF01156 Inosine-uridine preferring nucleoside hydrolase DB29_03080 PF00582 Universal stress protein family DB29_03081 PF01418 Helix-turn-helix domain, rpiR family DB29_03081 PF01380 SIS domain DB29_03082 PF00294 pfkB family carbohydrate kinase DB29_03083 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_03083 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_03084 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_03084 PF02378 Phosphotransferase system, EIIC DB29_03084 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_03085 PF01116 Fructose-bisphosphate aldolase class-II DB29_03087 PF04608 Phosphatidylglycerophosphatase A DB29_03091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DB29_03091 PF03466 LysR substrate binding domain DB29_03092 PF03358 NADPH-dependent FMN reductase DB29_03093 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DB29_03093 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DB29_03094 PF00440 Bacterial regulatory proteins, tetR family DB29_03094 PF08359 YsiA-like protein, C-terminal region DB29_03096 PF00005 ABC transporter DB29_03098 PF00291 Pyridoxal-phosphate dependent enzyme DB29_03099 PF00194 Eukaryotic-type carbonic anhydrase DB29_03101 PF01546 Peptidase family M20/M25/M40 DB29_03102 PF03806 AbgT putative transporter family DB29_03103 PF07687 Peptidase dimerisation domain DB29_03103 PF01546 Peptidase family M20/M25/M40 DB29_03104 PF12800 4Fe-4S binding domain DB29_03104 PF00037 4Fe-4S binding domain DB29_03106 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DB29_03106 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DB29_03110 PF13439 Glycosyltransferase Family 4 DB29_03113 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DB29_03113 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DB29_03113 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DB29_03115 PF00535 Glycosyl transferase family 2 DB29_03116 PF00953 Glycosyl transferase family 4 DB29_03117 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_03117 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_03119 PF01467 Cytidylyltransferase-like DB29_03136 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DB29_03136 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DB29_03137 PF02805 Metal binding domain of Ada DB29_03137 PF12833 Helix-turn-helix domain DB29_03138 PF00730 HhH-GPD superfamily base excision DNA repair protein DB29_03138 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain DB29_03139 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_03139 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_03140 PF14572 Phosphoribosyl synthetase-associated domain DB29_03140 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DB29_03142 PF05163 DinB family DB29_03143 PF13280 WYL domain DB29_03143 PF08279 HTH domain DB29_03145 PF00106 short chain dehydrogenase DB29_03146 PF02547 Queuosine biosynthesis protein DB29_03148 PF00072 Response regulator receiver domain DB29_03148 PF00196 Bacterial regulatory proteins, luxR family DB29_03149 PF07730 Histidine kinase DB29_03149 PF13185 GAF domain DB29_03154 PF02082 Transcriptional regulator DB29_03156 PF01081 KDPG and KHG aldolase DB29_03159 PF00005 ABC transporter DB29_03160 PF00392 Bacterial regulatory proteins, gntR family DB29_03165 PF01381 Helix-turn-helix DB29_03167 PF00933 Glycosyl hydrolase family 3 N terminal domain DB29_03167 PF01915 Glycosyl hydrolase family 3 C-terminal domain DB29_03169 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03170 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03171 PF00005 ABC transporter DB29_03171 PF17912 MalK OB fold domain DB29_03171 PF03459 TOBE domain DB29_03174 PF00356 Bacterial regulatory proteins, lacI family DB29_03175 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03176 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03178 PF08244 Glycosyl hydrolases family 32 C terminal DB29_03178 PF00251 Glycosyl hydrolases family 32 N-terminal domain DB29_03179 PF08244 Glycosyl hydrolases family 32 C terminal DB29_03179 PF00251 Glycosyl hydrolases family 32 N-terminal domain DB29_03181 PF00704 Glycosyl hydrolases family 18 DB29_03181 PF01476 LysM domain DB29_03183 PF00857 Isochorismatase family DB29_03185 PF00268 Ribonucleotide reductase, small chain DB29_03186 PF00317 Ribonucleotide reductase, all-alpha domain DB29_03186 PF08343 Ribonucleotide reductase N-terminal DB29_03186 PF02867 Ribonucleotide reductase, barrel domain DB29_03187 PF07972 NrdI Flavodoxin like DB29_03190 PF02397 Bacterial sugar transferase DB29_03191 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DB29_03193 PF01467 Cytidylyltransferase-like DB29_03194 PF00535 Glycosyl transferase family 2 DB29_03194 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DB29_03195 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DB29_03195 PF00535 Glycosyl transferase family 2 DB29_03196 PF00483 Nucleotidyl transferase DB29_03197 PF05036 Sporulation related domain DB29_03197 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DB29_03197 PF08239 Bacterial SH3 domain DB29_03198 PF03816 Cell envelope-related transcriptional attenuator domain DB29_03200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_03200 PF00005 ABC transporter DB29_03201 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_03201 PF00005 ABC transporter DB29_03202 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03203 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03204 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_03205 PF01470 Pyroglutamyl peptidase DB29_03206 PF09186 Domain of unknown function (DUF1949) DB29_03206 PF01205 Uncharacterized protein family UPF0029 DB29_03207 PF05384 Sensor protein DegS DB29_03207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_03207 PF07730 Histidine kinase DB29_03208 PF00196 Bacterial regulatory proteins, luxR family DB29_03208 PF00072 Response regulator receiver domain DB29_03209 PF02645 Uncharacterised protein, DegV family COG1307 DB29_03211 PF00271 Helicase conserved C-terminal domain DB29_03211 PF04851 Type III restriction enzyme, res subunit DB29_03214 PF04316 Anti-sigma-28 factor, FlgM DB29_03216 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DB29_03216 PF00460 Flagella basal body rod protein DB29_03217 PF00669 Bacterial flagellin N-terminal helical region DB29_03217 PF00700 Bacterial flagellin C-terminal helical region DB29_03218 PF02623 FliW protein DB29_03219 PF02599 Global regulator protein family DB29_03220 PF03646 FlaG protein DB29_03221 PF02465 Flagellar hook-associated protein 2 N-terminus DB29_03221 PF07195 Flagellar hook-associated protein 2 C-terminus DB29_03222 PF02561 Flagellar protein FliS DB29_03225 PF00313 'Cold-shock' DNA-binding domain DB29_03226 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DB29_03226 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DB29_03227 PF02810 SEC-C motif DB29_03227 PF07516 SecA Wing and Scaffold domain DB29_03227 PF07517 SecA DEAD-like domain DB29_03227 PF01043 SecA preprotein cross-linking domain DB29_03228 PF00472 RF-1 domain DB29_03228 PF03462 PCRF domain DB29_03229 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DB29_03229 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DB29_03230 PF00005 ABC transporter DB29_03231 PF18075 FtsX extracellular domain DB29_03231 PF02687 FtsX-like permease family DB29_03232 PF01476 LysM domain DB29_03232 PF08525 Opacity-associated protein A N-terminal motif DB29_03232 PF01551 Peptidase family M23 DB29_03233 PF17820 PDZ domain DB29_03233 PF03572 Peptidase family S41 DB29_03233 PF01471 Putative peptidoglycan binding domain DB29_03234 PF17820 PDZ domain DB29_03235 PF00892 EamA-like transporter family DB29_03237 PF02151 UvrB/uvrC motif DB29_03237 PF17757 UvrB interaction domain DB29_03237 PF04851 Type III restriction enzyme, res subunit DB29_03237 PF12344 Ultra-violet resistance protein B DB29_03237 PF00271 Helicase conserved C-terminal domain DB29_03238 PF17755 UvrA DNA-binding domain DB29_03238 PF17760 UvrA interaction domain DB29_03239 PF13349 Putative adhesin DB29_03240 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV DB29_03241 PF02603 HPr Serine kinase N terminus DB29_03241 PF07475 HPr Serine kinase C-terminal domain DB29_03242 PF01790 Prolipoprotein diacylglyceryl transferase DB29_03243 PF07670 Nucleoside recognition DB29_03244 PF13419 Haloacid dehalogenase-like hydrolase DB29_03245 PF14602 Hexapeptide repeat of succinyl-transferase DB29_03246 PF13393 Histidyl-tRNA synthetase DB29_03247 PF01634 ATP phosphoribosyltransferase DB29_03249 PF00475 Imidazoleglycerol-phosphate dehydratase DB29_03250 PF00117 Glutamine amidotransferase class-I DB29_03251 PF00977 Histidine biosynthesis protein DB29_03252 PF00977 Histidine biosynthesis protein DB29_03253 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DB29_03253 PF01502 Phosphoribosyl-AMP cyclohydrolase DB29_03255 PF00892 EamA-like transporter family DB29_03256 PF00067 Cytochrome P450 DB29_03259 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_03260 PF00293 NUDIX domain DB29_03261 PF03668 P-loop ATPase protein family DB29_03262 PF01933 Uncharacterised protein family UPF0052 DB29_03263 PF14527 WhiA LAGLIDADG-like domain DB29_03263 PF02650 WhiA C-terminal HTH domain DB29_03263 PF10298 WhiA N-terminal LAGLIDADG-like domain DB29_03264 PF00381 PTS HPr component phosphorylation site DB29_03265 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03266 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DB29_03267 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03268 PF00571 CBS domain DB29_03268 PF00005 ABC transporter DB29_03270 PF07687 Peptidase dimerisation domain DB29_03270 PF01546 Peptidase family M20/M25/M40 DB29_03271 PF00574 Clp protease DB29_03272 PF04552 Sigma-54, DNA binding domain DB29_03272 PF04963 Sigma-54 factor, core binding domain DB29_03272 PF00309 Sigma-54 factor, Activator interacting domain (AID) DB29_03275 PF18801 response regulator aspartate phosphatase H, N terminal DB29_03276 PF04198 Putative sugar-binding domain DB29_03277 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DB29_03277 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DB29_03278 PF00162 Phosphoglycerate kinase DB29_03279 PF00121 Triosephosphate isomerase DB29_03280 PF01676 Metalloenzyme superfamily DB29_03280 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DB29_03281 PF00113 Enolase, C-terminal TIM barrel domain DB29_03281 PF03952 Enolase, N-terminal domain DB29_03282 PF07729 FCD domain DB29_03282 PF00392 Bacterial regulatory proteins, gntR family DB29_03283 PF00701 Dihydrodipicolinate synthetase family DB29_03284 PF00171 Aldehyde dehydrogenase family DB29_03285 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DB29_03285 PF13378 Enolase C-terminal domain-like DB29_03288 PF01970 Tripartite tricarboxylate transporter TctA family DB29_03290 PF03840 Preprotein translocase SecG subunit DB29_03291 PF00296 Luciferase-like monooxygenase DB29_03292 PF12146 Serine aminopeptidase, S33 DB29_03293 PF12146 Serine aminopeptidase, S33 DB29_03294 PF00575 S1 RNA binding domain DB29_03294 PF17876 Cold shock domain DB29_03294 PF08206 Ribonuclease B OB domain DB29_03294 PF00773 RNB domain DB29_03295 PF07681 DoxX DB29_03296 PF01668 SmpB protein DB29_03302 PF01674 Lipase (class 2) DB29_03304 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DB29_03304 PF01522 Polysaccharide deacetylase DB29_03306 PF12793 Sugar transport-related sRNA regulator N-term DB29_03306 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_03308 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DB29_03308 PF00378 Enoyl-CoA hydratase/isomerase DB29_03308 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DB29_03309 PF02803 Thiolase, C-terminal domain DB29_03309 PF00108 Thiolase, N-terminal domain DB29_03310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DB29_03310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DB29_03310 PF02770 Acyl-CoA dehydrogenase, middle domain DB29_03311 PF03960 ArsC family DB29_03312 PF01597 Glycine cleavage H-protein DB29_03314 PF00005 ABC transporter DB29_03314 PF09383 NIL domain DB29_03315 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03316 PF03180 NLPA lipoprotein DB29_03318 PF01497 Periplasmic binding protein DB29_03319 PF02627 Carboxymuconolactone decarboxylase family DB29_03321 PF00005 ABC transporter DB29_03322 PF01458 Uncharacterized protein family (UPF0051) DB29_03323 PF00266 Aminotransferase class-V DB29_03324 PF01592 NifU-like N terminal domain DB29_03325 PF01458 Uncharacterized protein family (UPF0051) DB29_03326 PF00463 Isocitrate lyase family DB29_03328 PF03123 CAT RNA binding domain DB29_03328 PF00874 PRD domain DB29_03329 PF00232 Glycosyl hydrolase family 1 DB29_03330 PF00232 Glycosyl hydrolase family 1 DB29_03331 PF08241 Methyltransferase domain DB29_03332 PF00248 Aldo/keto reductase family DB29_03333 PF01497 Periplasmic binding protein DB29_03333 PF12833 Helix-turn-helix domain DB29_03343 PF01904 Protein of unknown function DUF72 DB29_03344 PF01925 Sulfite exporter TauE/SafE DB29_03345 PF02872 5'-nucleotidase, C-terminal domain DB29_03346 PF08827 Domain of unknown function (DUF1805) DB29_03347 PF00303 Thymidylate synthase DB29_03348 PF00186 Dihydrofolate reductase DB29_03349 PF09560 Sporulation protein YunB (Spo_YunB) DB29_03350 PF03553 Na+/H+ antiporter family DB29_03351 PF01551 Peptidase family M23 DB29_03352 PF04055 Radical SAM superfamily DB29_03352 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DB29_03353 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DB29_03354 PF06265 Protein of unknown function (DUF1027) DB29_03356 PF01934 Protein of unknown function DUF86 DB29_03357 PF13344 Haloacid dehalogenase-like hydrolase DB29_03358 PF04608 Phosphatidylglycerophosphatase A DB29_03360 PF01842 ACT domain DB29_03360 PF00742 Homoserine dehydrogenase DB29_03360 PF03447 Homoserine dehydrogenase, NAD binding domain DB29_03361 PF00291 Pyridoxal-phosphate dependent enzyme DB29_03362 PF00288 GHMP kinases N terminal domain DB29_03362 PF08544 GHMP kinases C terminal DB29_03363 PF01106 NifU-like domain DB29_03364 PF07315 Protein of unknown function (DUF1462) DB29_03365 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_03366 PF07293 Protein of unknown function (DUF1450) DB29_03368 PF01678 Diaminopimelate epimerase DB29_03369 PF04055 Radical SAM superfamily DB29_03371 PF01521 Iron-sulphur cluster biosynthesis DB29_03372 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03373 PF00497 Bacterial extracellular solute-binding proteins, family 3 DB29_03375 PF02378 Phosphotransferase system, EIIC DB29_03375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_03376 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DB29_03376 PF08279 HTH domain DB29_03376 PF05043 Mga helix-turn-helix domain DB29_03376 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_03376 PF00874 PRD domain DB29_03377 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DB29_03378 PF01232 Mannitol dehydrogenase Rossmann domain DB29_03378 PF08125 Mannitol dehydrogenase C-terminal domain DB29_03379 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_03380 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_03381 PF14068 Putative membrane protein DB29_03382 PF06725 3D domain DB29_03383 PF02681 Divergent PAP2 family DB29_03384 PF02789 Cytosol aminopeptidase family, N-terminal domain DB29_03384 PF00883 Cytosol aminopeptidase family, catalytic domain DB29_03386 PF01797 Transposase IS200 like DB29_03387 PF13726 Na+-H+ antiporter family DB29_03387 PF03553 Na+/H+ antiporter family DB29_03388 PF00216 Bacterial DNA-binding protein DB29_03389 PF03631 Virulence factor BrkB DB29_03390 PF02664 S-Ribosylhomocysteinase (LuxS) DB29_03391 PF01037 Lrp/AsnC ligand binding domain DB29_03392 PF00155 Aminotransferase class I and II DB29_03393 PF02110 Hydroxyethylthiazole kinase family DB29_03394 PF00270 DEAD/DEAH box helicase DB29_03394 PF00271 Helicase conserved C-terminal domain DB29_03395 PF00575 S1 RNA binding domain DB29_03396 PF04070 Domain of unknown function (DUF378) DB29_03398 PF00465 Iron-containing alcohol dehydrogenase DB29_03399 PF07478 D-ala D-ala ligase C-terminus DB29_03399 PF01820 D-ala D-ala ligase N-terminus DB29_03400 PF00342 Phosphoglucose isomerase DB29_03401 PF08868 YugN-like family DB29_03403 PF01368 DHH family DB29_03403 PF02833 DHHA2 domain DB29_03404 PF01040 UbiA prenyltransferase family DB29_03405 PF07301 Protein of unknown function (DUF1453) DB29_03406 PF07457 Protein of unknown function (DUF1516) DB29_03409 PF00375 Sodium:dicarboxylate symporter family DB29_03410 PF01569 PAP2 superfamily DB29_03411 PF01032 FecCD transport family DB29_03412 PF01032 FecCD transport family DB29_03413 PF00005 ABC transporter DB29_03415 PF01797 Transposase IS200 like DB29_03417 PF01712 Deoxynucleoside kinase DB29_03418 PF01712 Deoxynucleoside kinase DB29_03419 PF00155 Aminotransferase class I and II DB29_03421 PF14183 YwpF-like protein DB29_03422 PF07690 Major Facilitator Superfamily DB29_03423 PF00293 NUDIX domain DB29_03424 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03425 PF00005 ABC transporter DB29_03427 PF00326 Prolyl oligopeptidase family DB29_03429 PF01293 Phosphoenolpyruvate carboxykinase DB29_03430 PF02772 S-adenosylmethionine synthetase, central domain DB29_03430 PF00438 S-adenosylmethionine synthetase, N-terminal domain DB29_03430 PF02773 S-adenosylmethionine synthetase, C-terminal domain DB29_03431 PF00132 Bacterial transferase hexapeptide (six repeats) DB29_03432 PF12146 Serine aminopeptidase, S33 DB29_03433 PF00484 Carbonic anhydrase DB29_03434 PF06962 Putative rRNA methylase DB29_03436 PF07690 Major Facilitator Superfamily DB29_03437 PF00056 lactate/malate dehydrogenase, NAD binding domain DB29_03437 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DB29_03438 PF13603 Leucyl-tRNA synthetase, Domain 2 DB29_03438 PF00133 tRNA synthetases class I (I, L, M and V) DB29_03438 PF08264 Anticodon-binding domain of tRNA DB29_03438 PF09334 tRNA synthetases class I (M) DB29_03444 PF01546 Peptidase family M20/M25/M40 DB29_03444 PF07687 Peptidase dimerisation domain DB29_03445 PF01894 Uncharacterised protein family UPF0047 DB29_03446 PF08450 SMP-30/Gluconolactonase/LRE-like region DB29_03447 PF01943 Polysaccharide biosynthesis protein DB29_03447 PF14667 Polysaccharide biosynthesis C-terminal domain DB29_03448 PF01098 Cell cycle protein DB29_03449 PF01098 Cell cycle protein DB29_03450 PF01479 S4 domain DB29_03450 PF00849 RNA pseudouridylate synthase DB29_03451 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DB29_03452 PF00106 short chain dehydrogenase DB29_03453 PF13411 MerR HTH family regulatory protein DB29_03454 PF12833 Helix-turn-helix domain DB29_03454 PF06445 GyrI-like small molecule binding domain DB29_03455 PF00291 Pyridoxal-phosphate dependent enzyme DB29_03457 PF03788 LrgA family DB29_03458 PF04172 LrgB-like family DB29_03459 PF00158 Sigma-54 interaction domain DB29_03459 PF13426 PAS domain DB29_03459 PF02954 Bacterial regulatory protein, Fis family DB29_03460 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_03460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DB29_03461 PF00676 Dehydrogenase E1 component DB29_03462 PF02780 Transketolase, C-terminal domain DB29_03462 PF02779 Transketolase, pyrimidine binding domain DB29_03463 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DB29_03463 PF00364 Biotin-requiring enzyme DB29_03463 PF02817 e3 binding domain DB29_03467 PF00551 Formyl transferase DB29_03467 PF01842 ACT domain DB29_03469 PF01636 Phosphotransferase enzyme family DB29_03471 PF02390 Putative methyltransferase DB29_03473 PF05343 M42 glutamyl aminopeptidase DB29_03474 PF01931 Protein of unknown function DUF84 DB29_03475 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ DB29_03478 PF00085 Thioredoxin DB29_03479 PF07285 Protein of unknown function (DUF1444) DB29_03480 PF01588 Putative tRNA binding domain DB29_03480 PF14794 Domain of unknown function (DUF4479) DB29_03481 PF17854 FtsK alpha domain DB29_03481 PF01580 FtsK/SpoIIIE family DB29_03481 PF09397 Ftsk gamma domain DB29_03482 PF08245 Mur ligase middle domain DB29_03482 PF02875 Mur ligase family, glutamate ligase domain DB29_03482 PF01225 Mur ligase family, catalytic domain DB29_03483 PF06103 Bacterial protein of unknown function (DUF948) DB29_03484 PF12732 YtxH-like protein DB29_03485 PF00793 DAHP synthetase I family DB29_03485 PF01817 Chorismate mutase type II DB29_03486 PF00356 Bacterial regulatory proteins, lacI family DB29_03487 PF00850 Histone deacetylase domain DB29_03488 PF00571 CBS domain DB29_03489 PF00583 Acetyltransferase (GNAT) family DB29_03490 PF00501 AMP-binding enzyme DB29_03490 PF13193 AMP-binding enzyme C-terminal domain DB29_03491 PF00905 Penicillin binding protein transpeptidase domain DB29_03491 PF00912 Transglycosylase DB29_03492 PF01479 S4 domain DB29_03492 PF00579 tRNA synthetases class I (W and Y) DB29_03493 PF00163 Ribosomal protein S4/S9 N-terminal domain DB29_03493 PF01479 S4 domain DB29_03494 PF13185 GAF domain DB29_03496 PF00440 Bacterial regulatory proteins, tetR family DB29_03497 PF02811 PHP domain DB29_03498 PF06160 Septation ring formation regulator, EzrA DB29_03499 PF00266 Aminotransferase class-V DB29_03500 PF02926 THUMP domain DB29_03500 PF02568 Thiamine biosynthesis protein (ThiI) DB29_03501 PF00269 Small, acid-soluble spore proteins, alpha/beta type DB29_03502 PF01343 Peptidase family S49 DB29_03503 PF06271 RDD family DB29_03505 PF09579 Sporulation protein YtfJ (Spore_YtfJ) DB29_03506 PF07690 Major Facilitator Superfamily DB29_03507 PF08534 Redoxin DB29_03508 PF02384 N-6 DNA Methylase DB29_03509 PF00871 Acetokinase family DB29_03510 PF01966 HD domain DB29_03512 PF00764 Arginosuccinate synthase DB29_03513 PF14698 Argininosuccinate lyase C-terminal DB29_03513 PF00206 Lyase DB29_03518 PF01321 Creatinase/Prolidase N-terminal domain DB29_03518 PF00557 Metallopeptidase family M24 DB29_03521 PF07085 DRTGG domain DB29_03521 PF00392 Bacterial regulatory proteins, gntR family DB29_03521 PF00571 CBS domain DB29_03521 PF03061 Thioesterase superfamily DB29_03523 PF02272 DHHA1 domain DB29_03523 PF01368 DHH family DB29_03525 PF14034 Sporulation protein YtrH DB29_03526 PF01336 OB-fold nucleic acid binding domain DB29_03526 PF07733 Bacterial DNA polymerase III alpha NTPase domain DB29_03526 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DB29_03526 PF02811 PHP domain DB29_03526 PF14579 Helix-hairpin-helix motif DB29_03527 PF00390 Malic enzyme, N-terminal domain DB29_03527 PF03949 Malic enzyme, NAD binding domain DB29_03528 PF07729 FCD domain DB29_03528 PF00392 Bacterial regulatory proteins, gntR family DB29_03529 PF17848 Acetyl-coA carboxylase zinc finger domain DB29_03529 PF01039 Carboxyl transferase domain DB29_03530 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DB29_03531 PF00365 Phosphofructokinase DB29_03532 PF00224 Pyruvate kinase, barrel domain DB29_03532 PF00391 PEP-utilising enzyme, mobile domain DB29_03532 PF02887 Pyruvate kinase, alpha/beta domain DB29_03533 PF04186 FxsA cytoplasmic membrane protein DB29_03534 PF04284 Protein of unknown function (DUF441) DB29_03535 PF00285 Citrate synthase, C-terminal domain DB29_03536 PF00180 Isocitrate/isopropylmalate dehydrogenase DB29_03537 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DB29_03537 PF00056 lactate/malate dehydrogenase, NAD binding domain DB29_03538 PF01037 Lrp/AsnC ligand binding domain DB29_03539 PF00486 Transcriptional regulatory protein, C terminal DB29_03539 PF00072 Response regulator receiver domain DB29_03540 PF00989 PAS fold DB29_03540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_03540 PF00512 His Kinase A (phospho-acceptor) domain DB29_03540 PF16736 Single Cache-like DB29_03541 PF00476 DNA polymerase family A DB29_03541 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DB29_03541 PF01367 5'-3' exonuclease, C-terminal SAM fold DB29_03542 PF06827 Zinc finger found in FPG and IleRS DB29_03542 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DB29_03542 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DB29_03543 PF02659 Putative manganese efflux pump DB29_03544 PF01121 Dephospho-CoA kinase DB29_03545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DB29_03545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DB29_03546 PF02675 S-adenosylmethionine decarboxylase DB29_03548 PF03477 ATP cone domain DB29_03549 PF07261 Replication initiation and membrane attachment DB29_03550 PF01695 IstB-like ATP binding protein DB29_03550 PF07319 Primosomal protein DnaI N-terminus DB29_03551 PF04055 Radical SAM superfamily DB29_03553 PF03129 Anticodon binding domain DB29_03553 PF02824 TGS domain DB29_03553 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DB29_03553 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DB29_03554 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DB29_03554 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DB29_03556 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DB29_03559 PF00005 ABC transporter DB29_03560 PF02687 FtsX-like permease family DB29_03560 PF12704 MacB-like periplasmic core domain DB29_03561 PF05198 Translation initiation factor IF-3, N-terminal domain DB29_03561 PF00707 Translation initiation factor IF-3, C-terminal domain DB29_03562 PF01632 Ribosomal protein L35 DB29_03563 PF00453 Ribosomal protein L20 DB29_03564 PF04341 Protein of unknown function, DUF485 DB29_03565 PF00474 Sodium:solute symporter family DB29_03567 PF05343 M42 glutamyl aminopeptidase DB29_03570 PF14098 Small, acid-soluble spore protein I DB29_03571 PF00588 SpoU rRNA Methylase family DB29_03571 PF08032 RNA 2'-O ribose methyltransferase substrate binding DB29_03572 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DB29_03572 PF01409 tRNA synthetases class II core domain (F) DB29_03573 PF03484 tRNA synthetase B5 domain DB29_03573 PF03483 B3/4 domain DB29_03573 PF03147 Ferredoxin-fold anticodon binding domain DB29_03573 PF01588 Putative tRNA binding domain DB29_03573 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DB29_03574 PF05164 Cell division protein ZapA DB29_03575 PF02674 Colicin V production protein DB29_03576 PF14716 Helix-hairpin-helix domain DB29_03576 PF14791 DNA polymerase beta thumb DB29_03576 PF02811 PHP domain DB29_03577 PF01713 Smr domain DB29_03577 PF00488 MutS domain V DB29_03578 PF03994 Domain of Unknown Function (DUF350) DB29_03579 PF00501 AMP-binding enzyme DB29_03579 PF13193 AMP-binding enzyme C-terminal domain DB29_03580 PF08359 YsiA-like protein, C-terminal region DB29_03580 PF00440 Bacterial regulatory proteins, tetR family DB29_03581 PF00378 Enoyl-CoA hydratase/isomerase DB29_03582 PF01012 Electron transfer flavoprotein domain DB29_03583 PF00766 Electron transfer flavoprotein FAD-binding domain DB29_03583 PF01012 Electron transfer flavoprotein domain DB29_03584 PF00085 Thioredoxin DB29_03585 PF08459 UvrC Helix-hairpin-helix N-terminal DB29_03585 PF01541 GIY-YIG catalytic domain DB29_03585 PF02151 UvrB/uvrC motif DB29_03587 PF02386 Cation transport protein DB29_03588 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DB29_03589 PF00890 FAD binding domain DB29_03589 PF02910 Fumarate reductase flavoprotein C-term DB29_03590 PF13183 4Fe-4S dicluster domain DB29_03590 PF13085 2Fe-2S iron-sulfur cluster binding domain DB29_03591 PF03061 Thioesterase superfamily DB29_03592 PF00196 Bacterial regulatory proteins, luxR family DB29_03593 PF00381 PTS HPr component phosphorylation site DB29_03594 PF02896 PEP-utilising enzyme, TIM barrel domain DB29_03594 PF00391 PEP-utilising enzyme, mobile domain DB29_03594 PF05524 PEP-utilising enzyme, N-terminal DB29_03595 PF01047 MarR family DB29_03596 PF01177 Asp/Glu/Hydantoin racemase DB29_03597 PF00037 4Fe-4S binding domain DB29_03597 PF12800 4Fe-4S binding domain DB29_03599 PF10646 Sporulation and spore germination DB29_03600 PF01138 3' exoribonuclease family, domain 1 DB29_03600 PF03725 3' exoribonuclease family, domain 2 DB29_03601 PF01725 Ham1 family DB29_03602 PF12850 Calcineurin-like phosphoesterase superfamily domain DB29_03603 PF00394 Multicopper oxidase DB29_03603 PF07731 Multicopper oxidase DB29_03603 PF07732 Multicopper oxidase DB29_03606 PF00920 Dehydratase family DB29_03608 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DB29_03608 PF00205 Thiamine pyrophosphate enzyme, central domain DB29_03608 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DB29_03609 PF10369 Small subunit of acetolactate synthase DB29_03609 PF01842 ACT domain DB29_03610 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DB29_03610 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DB29_03611 PF08502 LeuA allosteric (dimerisation) domain DB29_03611 PF00682 HMGL-like DB29_03612 PF00180 Isocitrate/isopropylmalate dehydrogenase DB29_03613 PF00330 Aconitase family (aconitate hydratase) DB29_03614 PF00694 Aconitase C-terminal domain DB29_03616 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DB29_03616 PF05698 Bacterial trigger factor protein (TF) C-terminus DB29_03616 PF05697 Bacterial trigger factor protein (TF) DB29_03617 PF07724 AAA domain (Cdc48 subfamily) DB29_03617 PF06689 ClpX C4-type zinc finger DB29_03617 PF10431 C-terminal, D2-small domain, of ClpB protein DB29_03618 PF00004 ATPase family associated with various cellular activities (AAA) DB29_03618 PF05362 Lon protease (S16) C-terminal proteolytic domain DB29_03619 PF00004 ATPase family associated with various cellular activities (AAA) DB29_03619 PF02190 ATP-dependent protease La (LON) substrate-binding domain DB29_03619 PF05362 Lon protease (S16) C-terminal proteolytic domain DB29_03620 PF01926 50S ribosome-binding GTPase DB29_03621 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DB29_03621 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DB29_03621 PF01488 Shikimate / quinate 5-dehydrogenase DB29_03622 PF01578 Cytochrome C assembly protein DB29_03623 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DB29_03623 PF03900 Porphobilinogen deaminase, C-terminal domain DB29_03625 PF00490 Delta-aminolevulinic acid dehydratase DB29_03626 PF00202 Aminotransferase class-III DB29_03627 PF01476 LysM domain DB29_03627 PF01476 LysM domain DB29_03632 PF10458 Valyl tRNA synthetase tRNA binding arm DB29_03632 PF00133 tRNA synthetases class I (I, L, M and V) DB29_03632 PF08264 Anticodon-binding domain of tRNA DB29_03633 PF02875 Mur ligase family, glutamate ligase domain DB29_03633 PF08245 Mur ligase middle domain DB29_03634 PF06750 Bacterial Peptidase A24 N-terminal domain DB29_03634 PF01478 Type IV leader peptidase family DB29_03636 PF00326 Prolyl oligopeptidase family DB29_03636 PF07676 WD40-like Beta Propeller Repeat DB29_03637 PF02545 Maf-like protein DB29_03638 PF04002 RadC-like JAB domain DB29_03640 PF04085 rod shape-determining protein MreC DB29_03641 PF04093 rod shape-determining protein MreD DB29_03642 PF03775 Septum formation inhibitor MinC, C-terminal domain DB29_03643 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DB29_03644 PF01965 DJ-1/PfpI family DB29_03645 PF01967 MoaC family DB29_03646 PF02632 BioY family DB29_03647 PF00248 Aldo/keto reductase family DB29_03648 PF01551 Peptidase family M23 DB29_03649 PF02163 Peptidase family M50 DB29_03650 PF10150 Ribonuclease E/G family DB29_03650 PF00575 S1 RNA binding domain DB29_03651 PF00829 Ribosomal prokaryotic L21 protein DB29_03652 PF04327 Cysteine protease Prp DB29_03653 PF01016 Ribosomal L27 protein DB29_03654 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DB29_03654 PF18277 AbrB C-terminal domain DB29_03655 PF01979 Amidohydrolase family DB29_03657 PF03167 Uracil DNA glycosylase superfamily DB29_03658 PF01266 FAD dependent oxidoreductase DB29_03659 PF07722 Peptidase C26 DB29_03660 PF01425 Amidase DB29_03661 PF05163 DinB family DB29_03663 PF12849 PBP superfamily domain DB29_03664 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03665 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03666 PF00005 ABC transporter DB29_03667 PF00005 ABC transporter DB29_03668 PF01895 PhoU domain DB29_03671 PF12705 PD-(D/E)XK nuclease superfamily DB29_03672 PF00580 UvrD/REP helicase N-terminal domain DB29_03672 PF12705 PD-(D/E)XK nuclease superfamily DB29_03672 PF13361 UvrD-like helicase C-terminal domain DB29_03673 PF01584 CheW-like domain DB29_03673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_03673 PF01627 Hpt domain DB29_03673 PF07194 P2 response regulator binding domain DB29_03673 PF02895 Signal transducing histidine kinase, homodimeric domain DB29_03674 PF01584 CheW-like domain DB29_03675 PF13537 Glutamine amidotransferase domain DB29_03675 PF00733 Asparagine synthase DB29_03676 PF08858 IDEAL domain DB29_03677 PF05593 RHS Repeat DB29_03682 PF01039 Carboxyl transferase domain DB29_03684 PF00581 Rhodanese-like domain DB29_03684 PF01206 Sulfurtransferase TusA DB29_03686 PF00326 Prolyl oligopeptidase family DB29_03687 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DB29_03687 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DB29_03690 PF00176 SNF2 family N-terminal domain DB29_03690 PF12419 SNF2 Helicase protein DB29_03690 PF00271 Helicase conserved C-terminal domain DB29_03696 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DB29_03697 PF02774 Semialdehyde dehydrogenase, dimerisation domain DB29_03697 PF01118 Semialdehyde dehydrogenase, NAD binding domain DB29_03698 PF01960 ArgJ family DB29_03699 PF00696 Amino acid kinase family DB29_03700 PF00202 Aminotransferase class-III DB29_03701 PF00117 Glutamine amidotransferase class-I DB29_03701 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DB29_03702 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DB29_03702 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DB29_03703 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DB29_03703 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DB29_03705 PF01370 NAD dependent epimerase/dehydratase family DB29_03707 PF16658 Class II release factor RF3, C-terminal domain DB29_03707 PF00009 Elongation factor Tu GTP binding domain DB29_03707 PF03144 Elongation factor Tu domain 2 DB29_03710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DB29_03710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DB29_03711 PF00109 Beta-ketoacyl synthase, N-terminal domain DB29_03711 PF02801 Beta-ketoacyl synthase, C-terminal domain DB29_03714 PF01743 Poly A polymerase head domain DB29_03714 PF12627 Probable RNA and SrmB- binding site of polymerase A DB29_03714 PF13735 tRNA nucleotidyltransferase domain 2 putative DB29_03716 PF07486 Cell Wall Hydrolase DB29_03716 PF01471 Putative peptidoglycan binding domain DB29_03717 PF00188 Cysteine-rich secretory protein family DB29_03718 PF00485 Phosphoribulokinase / Uridine kinase family DB29_03719 PF04607 Region found in RelA / SpoT proteins DB29_03720 PF10026 Predicted Zn-dependent protease (DUF2268) DB29_03721 PF12227 Protein of unknown function (DUF3603) DB29_03723 PF00579 tRNA synthetases class I (W and Y) DB29_03725 PF00578 AhpC/TSA family DB29_03726 PF01966 HD domain DB29_03727 PF03006 Haemolysin-III related DB29_03730 PF13508 Acetyltransferase (GNAT) domain DB29_03732 PF03960 ArsC family DB29_03737 PF01152 Bacterial-like globin DB29_03739 PF01464 Transglycosylase SLT domain DB29_03740 PF01928 CYTH domain DB29_03742 PF04607 Region found in RelA / SpoT proteins DB29_03743 PF01513 ATP-NAD kinase DB29_03744 PF00849 RNA pseudouridylate synthase DB29_03746 PF07098 Protein of unknown function (DUF1360) DB29_03747 PF01209 ubiE/COQ5 methyltransferase family DB29_03753 PF07552 Spore Coat Protein X and V domain DB29_03756 PF00580 UvrD/REP helicase N-terminal domain DB29_03756 PF13361 UvrD-like helicase C-terminal domain DB29_03757 PF00437 Type II/IV secretion system protein DB29_03759 PF01809 Putative membrane protein insertion efficiency factor DB29_03760 PF07963 Prokaryotic N-terminal methylation motif DB29_03766 PF11117 Protein of unknown function (DUF2626) DB29_03767 PF00753 Metallo-beta-lactamase superfamily DB29_03769 PF11079 Bacterial protein YqhG of unknown function DB29_03770 PF00176 SNF2 family N-terminal domain DB29_03770 PF00271 Helicase conserved C-terminal domain DB29_03771 PF08669 Glycine cleavage T-protein C-terminal barrel domain DB29_03771 PF01571 Aminomethyltransferase folate-binding domain DB29_03772 PF02347 Glycine cleavage system P-protein DB29_03773 PF02347 Glycine cleavage system P-protein DB29_03774 PF00581 Rhodanese-like domain DB29_03775 PF03099 Biotin/lipoate A/B protein ligase family DB29_03776 PF13538 UvrD-like helicase C-terminal domain DB29_03777 PF01063 Amino-transferase class IV DB29_03779 PF01325 Iron dependent repressor, N-terminal DNA binding domain DB29_03779 PF02742 Iron dependent repressor, metal binding and dimerisation domain DB29_03780 PF01734 Patatin-like phospholipase DB29_03782 PF11085 Conserved membrane protein YqhR DB29_03783 PF01321 Creatinase/Prolidase N-terminal domain DB29_03783 PF00557 Metallopeptidase family M24 DB29_03784 PF09285 Elongation factor P, C-terminal DB29_03784 PF01132 Elongation factor P (EF-P) OB domain DB29_03784 PF08207 Elongation factor P (EF-P) KOW-like domain DB29_03785 PF01202 Shikimate kinase DB29_03788 PF10942 Protein of unknown function (DUF2619) DB29_03790 PF09548 Stage III sporulation protein AB (spore_III_AB) DB29_03791 PF06686 Stage III sporulation protein AC/AD protein family DB29_03792 PF06686 Stage III sporulation protein AC/AD protein family DB29_03793 PF09546 Stage III sporulation protein AE (spore_III_AE) DB29_03794 PF09581 Stage III sporulation protein AF (Spore_III_AF) DB29_03796 PF12685 SpoIIIAH-like protein DB29_03798 PF00364 Biotin-requiring enzyme DB29_03799 PF02785 Biotin carboxylase C-terminal domain DB29_03799 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DB29_03799 PF00289 Biotin carboxylase, N-terminal domain DB29_03800 PF03780 Asp23 family, cell envelope-related function DB29_03801 PF01029 NusB family DB29_03802 PF02601 Exonuclease VII, large subunit DB29_03802 PF13742 OB-fold nucleic acid binding domain DB29_03803 PF02609 Exonuclease VII small subunit DB29_03804 PF00348 Polyprenyl synthetase DB29_03805 PF02780 Transketolase, C-terminal domain DB29_03805 PF02779 Transketolase, pyrimidine binding domain DB29_03805 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DB29_03806 PF01728 FtsJ-like methyltransferase DB29_03806 PF01479 S4 domain DB29_03808 PF02863 Arginine repressor, C-terminal domain DB29_03808 PF01316 Arginine repressor, DNA binding domain DB29_03809 PF02463 RecF/RecN/SMC N terminal domain DB29_03810 PF05580 SpoIVB peptidase S55 DB29_03810 PF17820 PDZ domain DB29_03811 PF08769 Sporulation initiation factor Spo0A C terminal DB29_03811 PF00072 Response regulator receiver domain DB29_03814 PF11118 Protein of unknown function (DUF2627) DB29_03815 PF00158 Sigma-54 interaction domain DB29_03815 PF00989 PAS fold DB29_03815 PF02954 Bacterial regulatory protein, Fis family DB29_03816 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DB29_03816 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DB29_03817 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_03817 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DB29_03818 PF00676 Dehydrogenase E1 component DB29_03819 PF02779 Transketolase, pyrimidine binding domain DB29_03819 PF02780 Transketolase, C-terminal domain DB29_03820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DB29_03820 PF00364 Biotin-requiring enzyme DB29_03820 PF02817 e3 binding domain DB29_03821 PF06491 Disulphide isomerase DB29_03825 PF02583 Metal-sensitive transcriptional repressor DB29_03826 PF00403 Heavy-metal-associated domain DB29_03828 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DB29_03830 PF13460 NAD(P)H-binding DB29_03831 PF01594 AI-2E family transporter DB29_03834 PF00924 Mechanosensitive ion channel DB29_03837 PF14602 Hexapeptide repeat of succinyl-transferase DB29_03837 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal DB29_03837 PF00132 Bacterial transferase hexapeptide (six repeats) DB29_03838 PF00202 Aminotransferase class-III DB29_03839 PF07687 Peptidase dimerisation domain DB29_03839 PF01546 Peptidase family M20/M25/M40 DB29_03840 PF03698 Uncharacterised protein family (UPF0180) DB29_03841 PF00924 Mechanosensitive ion channel DB29_03842 PF00578 AhpC/TSA family DB29_03842 PF10417 C-terminal domain of 1-Cys peroxiredoxin DB29_03843 PF00578 AhpC/TSA family DB29_03844 PF02080 TrkA-C domain DB29_03844 PF02254 TrkA-N domain DB29_03845 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DB29_03845 PF00753 Metallo-beta-lactamase superfamily DB29_03845 PF17770 Ribonuclease J C-terminal domain DB29_03847 PF01327 Polypeptide deformylase DB29_03850 PF00676 Dehydrogenase E1 component DB29_03851 PF02779 Transketolase, pyrimidine binding domain DB29_03851 PF02780 Transketolase, C-terminal domain DB29_03852 PF02817 e3 binding domain DB29_03852 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DB29_03852 PF00364 Biotin-requiring enzyme DB29_03853 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_03853 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DB29_03854 PF00005 ABC transporter DB29_03854 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_03855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DB29_03855 PF00005 ABC transporter DB29_03856 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DB29_03857 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03858 PF12911 N-terminal TM domain of oligopeptide transport permease C DB29_03858 PF00528 Binding-protein-dependent transport system inner membrane component DB29_03860 PF02028 BCCT, betaine/carnitine/choline family transporter DB29_03865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DB29_03865 PF01276 Orn/Lys/Arg decarboxylase, major domain DB29_03866 PF05256 Uncharacterised protein family (UPF0223) DB29_03867 PF06335 Protein of unknown function (DUF1054) DB29_03868 PF00459 Inositol monophosphatase family DB29_03869 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DB29_03869 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DB29_03872 PF14036 YlaH-like protein DB29_03873 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) DB29_03874 PF02562 PhoH-like protein DB29_03874 PF13638 PIN domain DB29_03876 PF07408 Protein of unknown function (DUF1507) DB29_03877 PF02785 Biotin carboxylase C-terminal domain DB29_03877 PF00289 Biotin carboxylase, N-terminal domain DB29_03877 PF02436 Conserved carboxylase domain DB29_03877 PF00682 HMGL-like DB29_03877 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DB29_03877 PF00364 Biotin-requiring enzyme DB29_03878 PF02628 Cytochrome oxidase assembly protein DB29_03885 PF08868 YugN-like family DB29_03886 PF00188 Cysteine-rich secretory protein family DB29_03886 PF14504 CAP-associated N-terminal DB29_03888 PF14071 Putative coat protein DB29_03893 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DB29_03896 PF01467 Cytidylyltransferase-like DB29_03897 PF07670 Nucleoside recognition DB29_03898 PF01734 Patatin-like phospholipase DB29_03899 PF13180 PDZ domain DB29_03899 PF05362 Lon protease (S16) C-terminal proteolytic domain DB29_03900 PF05636 HIGH Nucleotidyl Transferase DB29_03901 PF02620 Large ribosomal RNA subunit accumulation protein YceD DB29_03903 PF00583 Acetyltransferase (GNAT) family DB29_03904 PF02558 Ketopantoate reductase PanE/ApbA DB29_03904 PF08546 Ketopantoate reductase PanE/ApbA C terminal DB29_03906 PF10079 Bacillithiol biosynthesis BshC DB29_03907 PF02381 MraZ protein, putative antitoxin-like DB29_03908 PF01795 MraW methylase family DB29_03911 PF00905 Penicillin binding protein transpeptidase domain DB29_03911 PF03793 PASTA domain DB29_03911 PF03717 Penicillin-binding Protein dimerisation domain DB29_03912 PF08245 Mur ligase middle domain DB29_03912 PF02875 Mur ligase family, glutamate ligase domain DB29_03912 PF01225 Mur ligase family, catalytic domain DB29_03913 PF08245 Mur ligase middle domain DB29_03913 PF02875 Mur ligase family, glutamate ligase domain DB29_03913 PF01225 Mur ligase family, catalytic domain DB29_03914 PF00953 Glycosyl transferase family 4 DB29_03914 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DB29_03915 PF02875 Mur ligase family, glutamate ligase domain DB29_03915 PF08245 Mur ligase middle domain DB29_03917 PF01098 Cell cycle protein DB29_03918 PF08478 POTRA domain, FtsQ-type DB29_03919 PF02491 SHS2 domain inserted in FTSA DB29_03920 PF00091 Tubulin/FtsZ family, GTPase domain DB29_03920 PF12327 FtsZ family, C-terminal domain DB29_03921 PF03419 Sporulation factor SpoIIGA DB29_03922 PF04545 Sigma-70, region 4 DB29_03922 PF04542 Sigma-70 region 2 DB29_03923 PF04539 Sigma-70 region 3 DB29_03923 PF04542 Sigma-70 region 2 DB29_03923 PF04545 Sigma-70, region 4 DB29_03924 PF05239 PRC-barrel domain DB29_03926 PF01168 Alanine racemase, N-terminal domain DB29_03927 PF04472 Cell division protein SepF DB29_03928 PF02325 YGGT family DB29_03929 PF17774 Putative RNA-binding domain in YlmH DB29_03929 PF01479 S4 domain DB29_03930 PF05103 DivIVA protein DB29_03931 PF06827 Zinc finger found in FPG and IleRS DB29_03931 PF00133 tRNA synthetases class I (I, L, M and V) DB29_03931 PF08264 Anticodon-binding domain of tRNA DB29_03932 PF01258 Prokaryotic dksA/traR C4-type zinc finger DB29_03933 PF01252 Signal peptidase (SPase) II DB29_03934 PF01479 S4 domain DB29_03934 PF00849 RNA pseudouridylate synthase DB29_03935 PF00156 Phosphoribosyl transferase domain DB29_03936 PF00860 Permease family DB29_03937 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DB29_03937 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DB29_03938 PF01979 Amidohydrolase family DB29_03939 PF00117 Glutamine amidotransferase class-I DB29_03939 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DB29_03940 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DB29_03940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DB29_03940 PF02142 MGS-like domain DB29_03941 PF00970 Oxidoreductase FAD-binding domain DB29_03941 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DB29_03942 PF01180 Dihydroorotate dehydrogenase DB29_03943 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DB29_03944 PF00156 Phosphoribosyl transferase domain DB29_03947 PF09586 Bacterial membrane protein YfhO DB29_03949 PF00689 Cation transporting ATPase, C-terminus DB29_03949 PF00690 Cation transporter/ATPase, N-terminus DB29_03951 PF04025 Domain of unknown function (DUF370) DB29_03952 PF00625 Guanylate kinase DB29_03953 PF01192 RNA polymerase Rpb6 DB29_03954 PF02441 Flavoprotein DB29_03954 PF04127 DNA / pantothenate metabolism flavoprotein DB29_03955 PF17764 3′ DNA-binding domain (3′BD) DB29_03955 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DB29_03955 PF18074 Primosomal protein N C-terminal domain DB29_03955 PF04851 Type III restriction enzyme, res subunit DB29_03955 PF00271 Helicase conserved C-terminal domain DB29_03956 PF02911 Formyl transferase, C-terminal domain DB29_03956 PF00551 Formyl transferase DB29_03957 PF01029 NusB family DB29_03957 PF01189 16S rRNA methyltransferase RsmB/F DB29_03959 PF03793 PASTA domain DB29_03959 PF00069 Protein kinase domain DB29_03960 PF03193 RsgA GTPase DB29_03960 PF16745 RsgA N-terminal domain DB29_03961 PF00834 Ribulose-phosphate 3 epimerase family DB29_03963 PF00830 Ribosomal L28 family DB29_03964 PF03780 Asp23 family, cell envelope-related function DB29_03965 PF13684 Dihydroxyacetone kinase family DB29_03965 PF02734 DAK2 domain DB29_03966 PF02645 Uncharacterised protein, DegV family COG1307 DB29_03967 PF03315 Serine dehydratase beta chain DB29_03967 PF01842 ACT domain DB29_03968 PF03313 Serine dehydratase alpha chain DB29_03969 PF17191 RecG wedge domain DB29_03969 PF00271 Helicase conserved C-terminal domain DB29_03969 PF00270 DEAD/DEAH box helicase DB29_03970 PF01575 MaoC like domain DB29_03971 PF02504 Fatty acid synthesis protein DB29_03972 PF00698 Acyl transferase domain DB29_03974 PF00550 Phosphopantetheine attachment site DB29_03975 PF00035 Double-stranded RNA binding motif DB29_03975 PF14622 Ribonuclease-III-like DB29_03976 PF06569 Protein of unknown function (DUF1128) DB29_03977 PF02463 RecF/RecN/SMC N terminal domain DB29_03977 PF06470 SMC proteins Flexible Hinge Domain DB29_03978 PF06470 SMC proteins Flexible Hinge Domain DB29_03978 PF02463 RecF/RecN/SMC N terminal domain DB29_03979 PF02881 SRP54-type protein, helical bundle domain DB29_03979 PF00448 SRP54-type protein, GTPase domain DB29_03980 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DB29_03981 PF00448 SRP54-type protein, GTPase domain DB29_03981 PF02881 SRP54-type protein, helical bundle domain DB29_03981 PF02978 Signal peptide binding domain DB29_03982 PF00886 Ribosomal protein S16 DB29_03985 PF05239 PRC-barrel domain DB29_03985 PF01782 RimM N-terminal domain DB29_03986 PF01746 tRNA (Guanine-1)-methyltransferase DB29_03987 PF05746 DALR anticodon binding domain DB29_03987 PF00750 tRNA synthetases class I (R) DB29_03987 PF03485 Arginyl tRNA synthetase N terminal domain DB29_03988 PF01245 Ribosomal protein L19 DB29_03990 PF10502 Signal peptidase, peptidase S26 DB29_03991 PF01926 50S ribosome-binding GTPase DB29_03993 PF01351 Ribonuclease HII DB29_03996 PF00549 CoA-ligase DB29_03996 PF08442 ATP-grasp domain DB29_03997 PF00549 CoA-ligase DB29_03997 PF02629 CoA binding domain DB29_03998 PF02481 DNA recombination-mediator protein A DB29_03999 PF01396 Topoisomerase DNA binding C4 zinc finger DB29_03999 PF01131 DNA topoisomerase DB29_03999 PF01751 Toprim domain DB29_04000 PF01134 Glucose inhibited division protein A DB29_04001 PF00589 Phage integrase family DB29_04001 PF02899 Phage integrase, N-terminal SAM-like domain DB29_04002 PF00227 Proteasome subunit DB29_04003 PF07724 AAA domain (Cdc48 subfamily) DB29_04003 PF10431 C-terminal, D2-small domain, of ClpB protein DB29_04003 PF00004 ATPase family associated with various cellular activities (AAA) DB29_04004 PF08222 CodY helix-turn-helix domain DB29_04004 PF06018 CodY GAF-like domain DB29_04005 PF00460 Flagella basal body rod protein DB29_04006 PF00460 Flagella basal body rod protein DB29_04006 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DB29_04007 PF02049 Flagellar hook-basal body complex protein FliE DB29_04008 PF08345 Flagellar M-ring protein C-terminal DB29_04008 PF01514 Secretory protein of YscJ/FliF family DB29_04009 PF14842 FliG N-terminal domain DB29_04009 PF14841 FliG middle domain DB29_04009 PF01706 FliG C-terminal domain DB29_04010 PF02108 Flagellar assembly protein FliH DB29_04011 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DB29_04011 PF18269 T3SS EscN ATPase C-terminal domain DB29_04011 PF02874 ATP synthase alpha/beta family, beta-barrel domain DB29_04015 PF03963 Flagellar hook capping protein - N-terminal region DB29_04016 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DB29_04016 PF00460 Flagella basal body rod protein DB29_04019 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DB29_04019 PF02154 Flagellar motor switch protein FliM DB29_04020 PF04509 CheC-like family DB29_04020 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DB29_04021 PF00072 Response regulator receiver domain DB29_04022 PF04347 Flagellar biosynthesis protein, FliO DB29_04023 PF00813 FliP family DB29_04024 PF01313 Bacterial export proteins, family 3 DB29_04025 PF01311 Bacterial export proteins, family 1 DB29_04026 PF01312 FlhB HrpN YscU SpaS Family DB29_04027 PF00771 FHIPEP family DB29_04028 PF00448 SRP54-type protein, GTPase domain DB29_04030 PF01339 CheB methylesterase DB29_04030 PF00072 Response regulator receiver domain DB29_04032 PF03975 CheD chemotactic sensory transduction DB29_04033 PF04545 Sigma-70, region 4 DB29_04033 PF04539 Sigma-70 region 3 DB29_04033 PF04542 Sigma-70 region 2 DB29_04035 PF00318 Ribosomal protein S2 DB29_04036 PF00889 Elongation factor TS DB29_04037 PF00696 Amino acid kinase family DB29_04038 PF01765 Ribosome recycling factor DB29_04039 PF01255 Putative undecaprenyl diphosphate synthase DB29_04041 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DB29_04041 PF13288 DXP reductoisomerase C-terminal domain DB29_04041 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DB29_04042 PF13180 PDZ domain DB29_04042 PF02163 Peptidase family M50 DB29_04043 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DB29_04043 PF04073 Aminoacyl-tRNA editing domain DB29_04043 PF03129 Anticodon binding domain DB29_04044 PF11490 DNA polymerase III polC-type N-terminus II DB29_04044 PF07733 Bacterial DNA polymerase III alpha NTPase domain DB29_04044 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DB29_04044 PF14579 Helix-hairpin-helix motif DB29_04044 PF14480 DNA polymerase III polC-type N-terminus I DB29_04044 PF02811 PHP domain DB29_04044 PF00929 Exonuclease DB29_04045 PF02576 RimP N-terminal domain DB29_04045 PF17384 RimP C-terminal SH3 domain DB29_04046 PF13184 NusA-like KH domain DB29_04046 PF08529 NusA N-terminal domain DB29_04046 PF00575 S1 RNA binding domain DB29_04047 PF04296 Protein of unknown function (DUF448) DB29_04048 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DB29_04049 PF04760 Translation initiation factor IF-2, N-terminal region DB29_04049 PF11987 Translation-initiation factor 2 DB29_04049 PF00009 Elongation factor Tu GTP binding domain DB29_04051 PF02033 Ribosome-binding factor A DB29_04052 PF01509 TruB family pseudouridylate synthase (N terminal domain) DB29_04052 PF16198 tRNA pseudouridylate synthase B C-terminal domain DB29_04053 PF01687 Riboflavin kinase DB29_04053 PF06574 FAD synthetase DB29_04055 PF00312 Ribosomal protein S15 DB29_04056 PF03725 3' exoribonuclease family, domain 2 DB29_04056 PF00013 KH domain DB29_04056 PF01138 3' exoribonuclease family, domain 1 DB29_04056 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DB29_04056 PF00575 S1 RNA binding domain DB29_04057 PF01522 Polysaccharide deacetylase DB29_04058 PF00675 Insulinase (Peptidase family M16) DB29_04058 PF05193 Peptidase M16 inactive domain DB29_04060 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DB29_04060 PF16924 Dipicolinate synthase subunit A N-terminal domain DB29_04061 PF02441 Flavoprotein DB29_04062 PF01118 Semialdehyde dehydrogenase, NAD binding domain DB29_04062 PF02774 Semialdehyde dehydrogenase, dimerisation domain DB29_04063 PF13840 ACT domain DB29_04063 PF00696 Amino acid kinase family DB29_04064 PF00701 Dihydrodipicolinate synthetase family DB29_04065 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DB29_04065 PF00753 Metallo-beta-lactamase superfamily DB29_04065 PF17770 Ribonuclease J C-terminal domain DB29_04066 PF00574 Clp protease DB29_04068 PF09397 Ftsk gamma domain DB29_04068 PF01580 FtsK/SpoIIIE family DB29_04068 PF17854 FtsK alpha domain DB29_04069 PF00392 Bacterial regulatory proteins, gntR family DB29_04069 PF07702 UTRA domain DB29_04070 PF05193 Peptidase M16 inactive domain DB29_04071 PF05193 Peptidase M16 inactive domain DB29_04071 PF00675 Insulinase (Peptidase family M16) DB29_04073 PF11588 Protein of unknown function (DUF3243) DB29_04074 PF11868 Protein of unknown function (DUF3388) DB29_04075 PF13464 Domain of unknown function (DUF4115) DB29_04076 PF01066 CDP-alcohol phosphatidyltransferase DB29_04077 PF02464 Competence-damaged protein DB29_04077 PF18146 Damage-inducible protein CinA KH domain DB29_04077 PF00994 Probable molybdopterin binding domain DB29_04078 PF00270 DEAD/DEAH box helicase DB29_04078 PF00271 Helicase conserved C-terminal domain DB29_04079 PF00154 recA bacterial DNA recombination protein DB29_04084 PF01966 HD domain DB29_04084 PF00013 KH domain DB29_04084 PF12072 Domain of unknown function (DUF3552) DB29_04085 PF13277 YmdB-like protein DB29_04086 PF04232 Stage V sporulation protein S (SpoVS) DB29_04088 PF04055 Radical SAM superfamily DB29_04088 PF00919 Uncharacterized protein family UPF0004 DB29_04088 PF01938 TRAM domain DB29_04089 PF06133 Control of competence regulator ComK, YlbF/YmcA DB29_04090 PF10628 Outer spore coat protein E (CotE) DB29_04091 PF05188 MutS domain II DB29_04091 PF05192 MutS domain III DB29_04091 PF01624 MutS domain I DB29_04091 PF05190 MutS family domain IV DB29_04091 PF00488 MutS domain V DB29_04092 PF08676 MutL C terminal dimerisation domain DB29_04092 PF01119 DNA mismatch repair protein, C-terminal domain DB29_04093 PF08676 MutL C terminal dimerisation domain DB29_04093 PF01119 DNA mismatch repair protein, C-terminal domain DB29_04094 PF04445 Putative SAM-dependent methyltransferase DB29_04096 PF17209 Hfq protein DB29_04099 PF17866 AAA lid domain DB29_04099 PF00004 ATPase family associated with various cellular activities (AAA) DB29_04100 PF06838 Methionine gamma-lyase DB29_04101 PF03951 Glutamine synthetase, beta-Grasp domain DB29_04101 PF00120 Glutamine synthetase, catalytic domain DB29_04104 PF02913 FAD linked oxidases, C-terminal domain DB29_04104 PF01565 FAD binding domain DB29_04105 PF13183 4Fe-4S dicluster domain DB29_04105 PF02754 Cysteine-rich domain DB29_04106 PF01565 FAD binding domain DB29_04106 PF02913 FAD linked oxidases, C-terminal domain DB29_04107 PF01274 Malate synthase DB29_04108 PF01557 Fumarylacetoacetate (FAA) hydrolase family DB29_04109 PF01614 Bacterial transcriptional regulator DB29_04109 PF09339 IclR helix-turn-helix domain DB29_04112 PF00817 impB/mucB/samB family DB29_04112 PF11798 IMS family HHH motif DB29_04112 PF11799 impB/mucB/samB family C-terminal domain DB29_04113 PF07690 Major Facilitator Superfamily DB29_04114 PF00717 Peptidase S24-like DB29_04114 PF01726 LexA DNA binding domain DB29_04116 PF00239 Resolvase, N terminal domain DB29_04118 PF05979 Bacterial protein of unknown function (DUF896) DB29_04119 PF02780 Transketolase, C-terminal domain DB29_04119 PF02779 Transketolase, pyrimidine binding domain DB29_04119 PF00456 Transketolase, thiamine diphosphate binding domain DB29_04120 PF10747 Sporulation inhibitor of replication protein SirA DB29_04121 PF03672 Uncharacterised protein family (UPF0154) DB29_04122 PF00664 ABC transporter transmembrane region DB29_04122 PF00005 ABC transporter DB29_04123 PF00664 ABC transporter transmembrane region DB29_04123 PF00005 ABC transporter DB29_04124 PF11084 Protein of unknown function (DUF2621) DB29_04126 PF08179 Small acid-soluble spore protein P family DB29_04127 PF00694 Aconitase C-terminal domain DB29_04127 PF00330 Aconitase family (aconitate hydratase) DB29_04132 PF08177 Small acid-soluble spore protein N family DB29_04134 PF00004 ATPase family associated with various cellular activities (AAA) DB29_04134 PF17866 AAA lid domain DB29_04135 PF03061 Thioesterase superfamily DB29_04136 PF02540 NAD synthase DB29_04139 PF12697 Alpha/beta hydrolase family DB29_04140 PF00563 EAL domain DB29_04140 PF10388 EAL-domain associated signalling protein domain DB29_04143 PF00011 Hsp20/alpha crystallin family DB29_04145 PF01584 CheW-like domain DB29_04145 PF00072 Response regulator receiver domain DB29_04147 PF01625 Peptide methionine sulfoxide reductase DB29_04148 PF07859 alpha/beta hydrolase fold DB29_04150 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DB29_04150 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DB29_04151 PF00115 Cytochrome C and Quinol oxidase polypeptide I DB29_04152 PF00510 Cytochrome c oxidase subunit III DB29_04153 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DB29_04154 PF17368 Spore morphogenesis and germination YwcE DB29_04155 PF00708 Acylphosphatase DB29_04156 PF01235 Sodium:alanine symporter family DB29_04157 PF02073 Thermophilic metalloprotease (M29) DB29_04158 PF06508 Queuosine biosynthesis protein QueC DB29_04159 PF01242 6-pyruvoyl tetrahydropterin synthase DB29_04160 PF04055 Radical SAM superfamily DB29_04161 PF14489 QueF-like protein DB29_04162 PF00196 Bacterial regulatory proteins, luxR family DB29_04162 PF00072 Response regulator receiver domain DB29_04163 PF07730 Histidine kinase DB29_04167 PF00005 ABC transporter DB29_04169 PF01131 DNA topoisomerase DB29_04169 PF01751 Toprim domain DB29_04170 PF02566 OsmC-like protein DB29_04175 PF02779 Transketolase, pyrimidine binding domain DB29_04175 PF16870 2-oxoglutarate dehydrogenase C-terminal DB29_04175 PF00676 Dehydrogenase E1 component DB29_04176 PF02817 e3 binding domain DB29_04176 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DB29_04176 PF00364 Biotin-requiring enzyme DB29_04178 PF00005 ABC transporter DB29_04178 PF12848 ABC transporter DB29_04179 PF00248 Aldo/keto reductase family DB29_04180 PF00271 Helicase conserved C-terminal domain DB29_04180 PF00270 DEAD/DEAH box helicase DB29_04180 PF00570 HRDC domain DB29_04180 PF09382 RQC domain DB29_04180 PF16124 RecQ zinc-binding DB29_04185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DB29_04185 PF01367 5'-3' exonuclease, C-terminal SAM fold DB29_04186 PF02585 GlcNAc-PI de-N-acetylase DB29_04187 PF08830 Protein of unknown function (DUF1806) DB29_04188 PF13180 PDZ domain DB29_04190 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) DB29_04192 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DB29_04192 PF02770 Acyl-CoA dehydrogenase, middle domain DB29_04192 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DB29_04195 PF02796 Helix-turn-helix domain of resolvase DB29_04195 PF00239 Resolvase, N terminal domain DB29_04198 PF01381 Helix-turn-helix DB29_04210 PF00436 Single-strand binding protein family DB29_04212 PF03838 Recombination protein U DB29_04217 PF08281 Sigma-70, region 4 DB29_04218 PF02481 DNA recombination-mediator protein A DB29_04221 PF03592 Terminase small subunit DB29_04221 PF10668 Phage terminase small subunit DB29_04244 PF10779 Haemolysin XhlA DB29_04246 PF05036 Sporulation related domain DB29_04246 PF01520 N-acetylmuramoyl-L-alanine amidase DB29_04249 PF18801 response regulator aspartate phosphatase H, N terminal DB29_04265 PF00534 Glycosyl transferases group 1 DB29_04265 PF09318 Glycosyl transferase 1 domain A DB29_04269 PF00367 phosphotransferase system, EIIB DB29_04269 PF02378 Phosphotransferase system, EIIC DB29_04270 PF10397 Adenylosuccinate lyase C-terminus DB29_04270 PF00206 Lyase DB29_04278 PF00367 phosphotransferase system, EIIB DB29_04278 PF02378 Phosphotransferase system, EIIC DB29_04279 PF04794 YdjC-like protein DB29_04280 PF11975 Family 4 glycosyl hydrolase C-terminal domain DB29_04280 PF02056 Family 4 glycosyl hydrolase DB29_04281 PF00392 Bacterial regulatory proteins, gntR family DB29_04281 PF07702 UTRA domain DB29_04285 PF01520 N-acetylmuramoyl-L-alanine amidase DB29_04285 PF04122 Putative cell wall binding repeat 2 DB29_04289 PF02585 GlcNAc-PI de-N-acetylase DB29_04290 PF13439 Glycosyltransferase Family 4 DB29_04290 PF00534 Glycosyl transferases group 1 DB29_04292 PF03099 Biotin/lipoate A/B protein ligase family DB29_04292 PF02237 Biotin protein ligase C terminal domain DB29_04292 PF08279 HTH domain DB29_04293 PF02548 Ketopantoate hydroxymethyltransferase DB29_04294 PF02569 Pantoate-beta-alanine ligase DB29_04295 PF02261 Aspartate decarboxylase DB29_04297 PF13307 Helicase C-terminal domain DB29_04297 PF04851 Type III restriction enzyme, res subunit DB29_04297 PF00929 Exonuclease DB29_04298 PF01979 Amidohydrolase family DB29_04300 PF14084 Protein of unknown function (DUF4264) DB29_04302 PF00152 tRNA synthetases class II (D, K and N) DB29_04302 PF01336 OB-fold nucleic acid binding domain DB29_04303 PF07261 Replication initiation and membrane attachment DB29_04304 PF00633 Helix-hairpin-helix motif DB29_04304 PF10576 Iron-sulfur binding domain of endonuclease III DB29_04304 PF00730 HhH-GPD superfamily base excision DNA repair protein DB29_04305 PF00350 Dynamin family DB29_04307 PF01797 Transposase IS200 like DB29_04308 PF00912 Transglycosylase DB29_04308 PF00905 Penicillin binding protein transpeptidase domain DB29_04309 PF03838 Recombination protein U DB29_04310 PF10720 Protein of unknown function (DUF2515) DB29_04312 PF13411 MerR HTH family regulatory protein DB29_04315 PF00585 C-terminal regulatory domain of Threonine dehydratase DB29_04315 PF00291 Pyridoxal-phosphate dependent enzyme DB29_04316 PF01965 DJ-1/PfpI family DB29_04317 PF12706 Beta-lactamase superfamily domain DB29_04317 PF00753 Metallo-beta-lactamase superfamily DB29_04319 PF06491 Disulphide isomerase DB29_04322 PF13769 Virulence factor DB29_04322 PF08712 Scaffold protein Nfu/NifU N terminal DB29_04324 PF03703 Bacterial PH domain DB29_04325 PF03703 Bacterial PH domain DB29_04330 PF01493 GXGXG motif DB29_04330 PF04898 Glutamate synthase central domain DB29_04330 PF01645 Conserved region in glutamate synthase DB29_04330 PF00310 Glutamine amidotransferases class-II DB29_04331 PF07992 Pyridine nucleotide-disulphide oxidoreductase DB29_04331 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DB29_04332 PF14005 YpjP-like protein DB29_04335 PF08810 Kinase associated protein B DB29_04336 PF00701 Dihydrodipicolinate synthetase family DB29_04337 PF09388 Spo0E like sporulation regulatory protein DB29_04342 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DB29_04343 PF01738 Dienelactone hydrolase family DB29_04345 PF05504 Spore germination B3/ GerAC like, C-terminal DB29_04346 PF03845 Spore germination protein DB29_04347 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_04349 PF00271 Helicase conserved C-terminal domain DB29_04349 PF09369 Domain of unknown function (DUF1998) DB29_04349 PF00270 DEAD/DEAH box helicase DB29_04350 PF13482 RNase_H superfamily DB29_04352 PF06908 YspA SLOG family DB29_04353 PF05103 DivIVA protein DB29_04354 PF13456 Reverse transcriptase-like DB29_04356 PF03845 Spore germination protein DB29_04357 PF03323 Bacillus/Clostridium GerA spore germination protein DB29_04360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DB29_04360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DB29_04362 PF10819 Protein of unknown function (DUF2564) DB29_04366 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DB29_04369 PF00005 ABC transporter DB29_04369 PF00571 CBS domain DB29_04370 PF00528 Binding-protein-dependent transport system inner membrane component DB29_04371 PF13380 CoA binding domain DB29_04372 PF00204 DNA gyrase B DB29_04372 PF00986 DNA gyrase B subunit, carboxyl terminus DB29_04372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DB29_04372 PF01751 Toprim domain DB29_04373 PF00521 DNA gyrase/topoisomerase IV, subunit A DB29_04373 PF03989 DNA gyrase C-terminal domain, beta-propeller DB29_04376 PF01258 Prokaryotic dksA/traR C4-type zinc finger DB29_04377 PF01594 AI-2E family transporter DB29_04378 PF00691 OmpA family DB29_04378 PF13677 Membrane MotB of proton-channel complex MotA/MotB DB29_04379 PF01618 MotA/TolQ/ExbB proton channel family DB29_04380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DB29_04380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DB29_04383 PF08818 Domain of unknown function (DU1801) DB29_04384 PF00302 Chloramphenicol acetyltransferase DB29_0P0003 PF00877 NlpC/P60 family DB29_0P0004 PF02796 Helix-turn-helix domain of resolvase DB29_0P0004 PF00239 Resolvase, N terminal domain DB29_0P0013 PF08863 YolD-like protein DB29_0P0020 PF04002 RadC-like JAB domain