locus-tag class description BF29_1 PF00132 Bacterial transferase hexapeptide (six repeats) BF29_1 PF14602 Hexapeptide repeat of succinyl-transferase BF29_1 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BF29_100 PF01594 AI-2E family transporter BF29_1000 PF02811 PHP domain BF29_1000 PF14716 Helix-hairpin-helix domain BF29_1000 PF14791 DNA polymerase beta thumb BF29_1001 PF02674 Colicin V production protein BF29_1002 PF05164 Cell division protein ZapA BF29_1003 PF11858 Domain of unknown function (DUF3378) BF29_1003 PF01351 Ribonuclease HII BF29_1004 PF06445 GyrI-like small molecule binding domain BF29_1004 PF13411 MerR HTH family regulatory protein BF29_1006 PF03484 tRNA synthetase B5 domain BF29_1006 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BF29_1006 PF01588 Putative tRNA binding domain BF29_1006 PF03483 B3/4 domain BF29_1006 PF03147 Ferredoxin-fold anticodon binding domain BF29_1007 PF01409 tRNA synthetases class II core domain (F) BF29_1007 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BF29_1008 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF29_1008 PF00588 SpoU rRNA Methylase family BF29_1009 PF14098 Small, acid-soluble spore protein I BF29_1012 PF01527 Transposase BF29_1013 PF13333 Integrase core domain BF29_1013 PF00665 Integrase core domain BF29_1013 PF13276 HTH-like domain BF29_1015 PF03551 Transcriptional regulator PadR-like family BF29_1017 PF06508 Queuosine biosynthesis protein QueC BF29_1019 PF03358 NADPH-dependent FMN reductase BF29_102 PF04055 Radical SAM superfamily BF29_1021 PF00692 dUTPase BF29_1023 PF00453 Ribosomal protein L20 BF29_1024 PF01632 Ribosomal protein L35 BF29_1025 PF00707 Translation initiation factor IF-3, C-terminal domain BF29_1025 PF05198 Translation initiation factor IF-3, N-terminal domain BF29_1027 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF29_1027 PF02824 TGS domain BF29_1027 PF03129 Anticodon binding domain BF29_1027 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF29_1028 PF08812 YtxC-like family BF29_1029 PF01695 IstB-like ATP binding protein BF29_1029 PF07319 Primosomal protein DnaI N-terminus BF29_103 PF01758 Sodium Bile acid symporter family BF29_1030 PF07261 Replication initiation and membrane attachment BF29_1031 PF03477 ATP cone domain BF29_1033 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF29_1033 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF29_1034 PF01121 Dephospho-CoA kinase BF29_1035 PF02659 Putative manganese efflux pump BF29_1036 PF06827 Zinc finger found in FPG and IleRS BF29_1036 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BF29_1036 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BF29_1037 PF00476 DNA polymerase family A BF29_1037 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF29_1037 PF01367 5'-3' exonuclease, C-terminal SAM fold BF29_1039 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF29_1039 PF00056 lactate/malate dehydrogenase, NAD binding domain BF29_1040 PF00180 Isocitrate/isopropylmalate dehydrogenase BF29_1041 PF00285 Citrate synthase, C-terminal domain BF29_1042 PF04284 Protein of unknown function (DUF441) BF29_1043 PF01594 AI-2E family transporter BF29_1044 PF00391 PEP-utilising enzyme, mobile domain BF29_1044 PF00224 Pyruvate kinase, barrel domain BF29_1044 PF02887 Pyruvate kinase, alpha/beta domain BF29_1045 PF00365 Phosphofructokinase BF29_1046 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BF29_1047 PF17848 Acetyl-coA carboxylase zinc finger domain BF29_1047 PF01039 Carboxyl transferase domain BF29_1048 PF03949 Malic enzyme, NAD binding domain BF29_1048 PF00390 Malic enzyme, N-terminal domain BF29_1049 PF01336 OB-fold nucleic acid binding domain BF29_1049 PF02811 PHP domain BF29_1049 PF14579 Helix-hairpin-helix motif BF29_1049 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF29_1049 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF29_105 PF00689 Cation transporting ATPase, C-terminus BF29_105 PF00690 Cation transporter/ATPase, N-terminus BF29_1050 PF14034 Sporulation protein YtrH BF29_1052 PF02272 DHHA1 domain BF29_1052 PF01368 DHH family BF29_1054 PF03061 Thioesterase superfamily BF29_1054 PF07085 DRTGG domain BF29_1054 PF00571 CBS domain BF29_1054 PF00392 Bacterial regulatory proteins, gntR family BF29_1056 PF00557 Metallopeptidase family M24 BF29_1056 PF01321 Creatinase/Prolidase N-terminal domain BF29_1057 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF29_1057 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BF29_1058 PF00582 Universal stress protein family BF29_106 PF08340 Domain of unknown function (DUF1732) BF29_106 PF03755 YicC-like family, N-terminal region BF29_1060 PF00871 Acetokinase family BF29_1061 PF02384 N-6 DNA Methylase BF29_1062 PF08534 Redoxin BF29_1063 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BF29_1065 PF06271 RDD family BF29_1066 PF01343 Peptidase family S49 BF29_1067 PF13193 AMP-binding enzyme C-terminal domain BF29_1067 PF00501 AMP-binding enzyme BF29_1068 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF29_1069 PF02926 THUMP domain BF29_1069 PF02568 Thiamine biosynthesis protein (ThiI) BF29_107 PF04025 Domain of unknown function (DUF370) BF29_1070 PF00266 Aminotransferase class-V BF29_1071 PF06160 Septation ring formation regulator, EzrA BF29_1072 PF00440 Bacterial regulatory proteins, tetR family BF29_1073 PF13185 GAF domain BF29_1074 PF00990 Diguanylate cyclase, GGDEF domain BF29_1075 PF00163 Ribosomal protein S4/S9 N-terminal domain BF29_1075 PF01479 S4 domain BF29_1078 PF01619 Proline dehydrogenase BF29_1079 PF00171 Aldehyde dehydrogenase family BF29_108 PF00625 Guanylate kinase BF29_1080 PF02954 Bacterial regulatory protein, Fis family BF29_1080 PF00158 Sigma-54 interaction domain BF29_1080 PF00989 PAS fold BF29_1081 PF01479 S4 domain BF29_1081 PF00579 tRNA synthetases class I (W and Y) BF29_1082 PF02634 FdhD/NarQ family BF29_1083 PF00384 Molybdopterin oxidoreductase BF29_1083 PF00037 4Fe-4S binding domain BF29_1083 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF29_1083 PF01568 Molydopterin dinucleotide binding domain BF29_1083 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF29_1084 PF07849 Protein of unknown function (DUF1641) BF29_1085 PF00899 ThiF family BF29_1086 PF01967 MoaC family BF29_1087 PF02597 ThiS family BF29_1088 PF02391 MoaE protein BF29_1089 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BF29_109 PF01192 RNA polymerase Rpb6 BF29_1090 PF03454 MoeA C-terminal region (domain IV) BF29_1090 PF03453 MoeA N-terminal region (domain I and II) BF29_1090 PF00994 Probable molybdopterin binding domain BF29_1091 PF12804 MobA-like NTP transferase domain BF29_1092 PF00994 Probable molybdopterin binding domain BF29_1093 PF04055 Radical SAM superfamily BF29_1093 PF06463 Molybdenum Cofactor Synthesis C BF29_1094 PF00005 ABC transporter BF29_1094 PF08402 TOBE domain BF29_1095 PF00528 Binding-protein-dependent transport system inner membrane component BF29_1097 PF13193 AMP-binding enzyme C-terminal domain BF29_1097 PF00501 AMP-binding enzyme BF29_1098 PF00583 Acetyltransferase (GNAT) family BF29_1099 PF00571 CBS domain BF29_110 PF02441 Flavoprotein BF29_110 PF04127 DNA / pantothenate metabolism flavoprotein BF29_1100 PF00850 Histone deacetylase domain BF29_1101 PF00356 Bacterial regulatory proteins, lacI family BF29_1102 PF01817 Chorismate mutase type II BF29_1102 PF00793 DAHP synthetase I family BF29_1103 PF12732 YtxH-like protein BF29_1105 PF01225 Mur ligase family, catalytic domain BF29_1105 PF02875 Mur ligase family, glutamate ligase domain BF29_1105 PF08245 Mur ligase middle domain BF29_1106 PF01580 FtsK/SpoIIIE family BF29_1106 PF09397 Ftsk gamma domain BF29_1106 PF17854 FtsK alpha domain BF29_1107 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BF29_1108 PF14794 Domain of unknown function (DUF4479) BF29_1108 PF01588 Putative tRNA binding domain BF29_1109 PF07285 Protein of unknown function (DUF1444) BF29_111 PF04851 Type III restriction enzyme, res subunit BF29_111 PF00271 Helicase conserved C-terminal domain BF29_111 PF17764 3′ DNA-binding domain (3′BD) BF29_111 PF18074 Primosomal protein N C-terminal domain BF29_111 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BF29_1110 PF00085 Thioredoxin BF29_1111 PF07228 Stage II sporulation protein E (SpoIIE) BF29_1111 PF13426 PAS domain BF29_1112 PF03705 CheR methyltransferase, all-alpha domain BF29_1112 PF01739 CheR methyltransferase, SAM binding domain BF29_1113 PF09308 LuxQ, periplasmic BF29_1113 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_1113 PF00512 His Kinase A (phospho-acceptor) domain BF29_1113 PF00072 Response regulator receiver domain BF29_1114 PF03413 Peptidase propeptide and YPEB domain BF29_1115 PF00753 Metallo-beta-lactamase superfamily BF29_1117 PF02390 Putative methyltransferase BF29_1118 PF14165 YtzH-like protein BF29_1119 PF01636 Phosphotransferase enzyme family BF29_112 PF01327 Polypeptide deformylase BF29_1122 PF02834 LigT like Phosphoesterase BF29_1124 PF01063 Amino-transferase class IV BF29_1125 PF01546 Peptidase family M20/M25/M40 BF29_1126 PF08220 DeoR-like helix-turn-helix domain BF29_1127 PF01943 Polysaccharide biosynthesis protein BF29_1127 PF14667 Polysaccharide biosynthesis C-terminal domain BF29_1128 PF10957 Sporulation protein Cse60 BF29_113 PF02911 Formyl transferase, C-terminal domain BF29_113 PF00551 Formyl transferase BF29_1131 PF08264 Anticodon-binding domain of tRNA BF29_1131 PF00133 tRNA synthetases class I (I, L, M and V) BF29_1131 PF13603 Leucyl-tRNA synthetase, Domain 2 BF29_1131 PF09334 tRNA synthetases class I (M) BF29_1132 PF07690 Major Facilitator Superfamily BF29_1133 PF10732 Protein of unknown function (DUF2524) BF29_1135 PF06962 Putative rRNA methylase BF29_1136 PF10776 Protein of unknown function (DUF2600) BF29_1137 PF12146 Serine aminopeptidase, S33 BF29_1138 PF00132 Bacterial transferase hexapeptide (six repeats) BF29_1139 PF00733 Asparagine synthase BF29_1139 PF13537 Glutamine amidotransferase domain BF29_114 PF01029 NusB family BF29_114 PF01189 16S rRNA methyltransferase RsmB/F BF29_1140 PF02773 S-adenosylmethionine synthetase, C-terminal domain BF29_1140 PF02772 S-adenosylmethionine synthetase, central domain BF29_1140 PF00438 S-adenosylmethionine synthetase, N-terminal domain BF29_1141 PF01293 Phosphoenolpyruvate carboxykinase BF29_1144 PF01385 Probable transposase BF29_1144 PF12323 Helix-turn-helix domain BF29_1144 PF07282 Putative transposase DNA-binding domain BF29_1145 PF00326 Prolyl oligopeptidase family BF29_1146 PF03358 NADPH-dependent FMN reductase BF29_1147 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF29_1147 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF29_1149 PF00005 ABC transporter BF29_1150 PF00528 Binding-protein-dependent transport system inner membrane component BF29_1153 PF00210 Ferritin-like domain BF29_1154 PF01809 Putative membrane protein insertion efficiency factor BF29_1156 PF01297 Zinc-uptake complex component A periplasmic BF29_1157 PF07561 Domain of Unknown Function (DUF1540) BF29_1158 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF29_1158 PF13378 Enolase C-terminal domain-like BF29_1159 PF00501 AMP-binding enzyme BF29_1159 PF13193 AMP-binding enzyme C-terminal domain BF29_116 PF03793 PASTA domain BF29_116 PF00069 Protein kinase domain BF29_1160 PF00378 Enoyl-CoA hydratase/isomerase BF29_1161 PF00561 alpha/beta hydrolase fold BF29_1162 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF29_1162 PF16582 Middle domain of thiamine pyrophosphate BF29_1162 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF29_1163 PF00425 chorismate binding enzyme BF29_1164 PF01040 UbiA prenyltransferase family BF29_117 PF16745 RsgA N-terminal domain BF29_117 PF03193 RsgA GTPase BF29_118 PF00834 Ribulose-phosphate 3 epimerase family BF29_119 PF04263 Thiamin pyrophosphokinase, catalytic domain BF29_119 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BF29_1194 PF02308 MgtC family BF29_1197 PF00403 Heavy-metal-associated domain BF29_1198 PF00403 Heavy-metal-associated domain BF29_12 PF01276 Orn/Lys/Arg decarboxylase, major domain BF29_12 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF29_120 PF00830 Ribosomal L28 family BF29_1200 PF01037 Lrp/AsnC ligand binding domain BF29_1203 PF01546 Peptidase family M20/M25/M40 BF29_1203 PF07687 Peptidase dimerisation domain BF29_1204 PF11755 Protein of unknown function (DUF3311) BF29_1205 PF00474 Sodium:solute symporter family BF29_1211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_1211 PF18698 Histidine kinase sensor domain BF29_1211 PF00512 His Kinase A (phospho-acceptor) domain BF29_1211 PF00989 PAS fold BF29_1211 PF00672 HAMP domain BF29_1212 PF00072 Response regulator receiver domain BF29_1212 PF00486 Transcriptional regulatory protein, C terminal BF29_1213 PF07563 Protein of unknown function (DUF1541) BF29_1215 PF00106 short chain dehydrogenase BF29_1216 PF01522 Polysaccharide deacetylase BF29_1219 PF09680 Family of unknown function BF29_122 PF03780 Asp23 family, cell envelope-related function BF29_1221 PF00654 Voltage gated chloride channel BF29_1222 PF00581 Rhodanese-like domain BF29_1223 PF02583 Metal-sensitive transcriptional repressor BF29_1224 PF00565 Staphylococcal nuclease homologue BF29_1224 PF05901 Excalibur calcium-binding domain BF29_1225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF29_1227 PF01527 Transposase BF29_1228 PF13333 Integrase core domain BF29_1228 PF00665 Integrase core domain BF29_1228 PF13276 HTH-like domain BF29_123 PF13684 Dihydroxyacetone kinase family BF29_123 PF02734 DAK2 domain BF29_1230 PF01385 Probable transposase BF29_1230 PF07282 Putative transposase DNA-binding domain BF29_1230 PF12323 Helix-turn-helix domain BF29_1232 PF02681 Divergent PAP2 family BF29_1233 PF01266 FAD dependent oxidoreductase BF29_1234 PF01266 FAD dependent oxidoreductase BF29_1235 PF00171 Aldehyde dehydrogenase family BF29_1236 PF02423 Ornithine cyclodeaminase/mu-crystallin family BF29_1239 PF07885 Ion channel BF29_1239 PF02254 TrkA-N domain BF29_124 PF01842 ACT domain BF29_124 PF03315 Serine dehydratase beta chain BF29_1240 PF00342 Phosphoglucose isomerase BF29_1241 PF04070 Domain of unknown function (DUF378) BF29_1243 PF00575 S1 RNA binding domain BF29_1245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF29_1246 PF00248 Aldo/keto reductase family BF29_1247 PF00248 Aldo/keto reductase family BF29_125 PF03313 Serine dehydratase alpha chain BF29_1250 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BF29_1254 PF01695 IstB-like ATP binding protein BF29_1256 PF18273 Type III R-M EcoP15I C-terminal domain BF29_1256 PF01555 DNA methylase BF29_1257 PF04851 Type III restriction enzyme, res subunit BF29_1257 PF08774 VRR-NUC domain BF29_1258 PF07690 Major Facilitator Superfamily BF29_1259 PF03061 Thioesterase superfamily BF29_126 PF00271 Helicase conserved C-terminal domain BF29_126 PF00270 DEAD/DEAH box helicase BF29_126 PF17191 RecG wedge domain BF29_1262 PF03845 Spore germination protein BF29_1263 PF05504 Spore germination B3/ GerAC like, C-terminal BF29_1264 PF03323 Bacillus/Clostridium GerA spore germination protein BF29_1266 PF02789 Cytosol aminopeptidase family, N-terminal domain BF29_1266 PF00883 Cytosol aminopeptidase family, catalytic domain BF29_1267 PF06725 3D domain BF29_1268 PF14068 Putative membrane protein BF29_1269 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_127 PF08279 HTH domain BF29_127 PF01575 MaoC like domain BF29_1270 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_1271 PF01757 Acyltransferase family BF29_1272 PF01522 Polysaccharide deacetylase BF29_1274 PF00535 Glycosyl transferase family 2 BF29_1277 PF12323 Helix-turn-helix domain BF29_1277 PF01385 Probable transposase BF29_1277 PF07282 Putative transposase DNA-binding domain BF29_1279 PF01521 Iron-sulphur cluster biosynthesis BF29_128 PF02504 Fatty acid synthesis protein BF29_1280 PF07315 Protein of unknown function (DUF1462) BF29_1281 PF01527 Transposase BF29_1282 PF13276 HTH-like domain BF29_1282 PF00665 Integrase core domain BF29_1282 PF13333 Integrase core domain BF29_1284 PF01106 NifU-like domain BF29_1287 PF04608 Phosphatidylglycerophosphatase A BF29_1288 PF13344 Haloacid dehalogenase-like hydrolase BF29_1289 PF01934 Protein of unknown function DUF86 BF29_129 PF00698 Acyl transferase domain BF29_1290 PF06265 Protein of unknown function (DUF1027) BF29_1291 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BF29_1291 PF04055 Radical SAM superfamily BF29_1292 PF01551 Peptidase family M23 BF29_1293 PF09560 Sporulation protein YunB (Spo_YunB) BF29_1294 PF08827 Domain of unknown function (DUF1805) BF29_1295 PF02872 5'-nucleotidase, C-terminal domain BF29_1296 PF01458 Uncharacterized protein family (UPF0051) BF29_1297 PF01592 NifU-like N terminal domain BF29_1298 PF00266 Aminotransferase class-V BF29_1299 PF01458 Uncharacterized protein family (UPF0051) BF29_13 PF05256 Uncharacterised protein family (UPF0223) BF29_1300 PF00005 ABC transporter BF29_1302 PF00085 Thioredoxin BF29_1303 PF01597 Glycine cleavage H-protein BF29_1304 PF03960 ArsC family BF29_1305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF29_1305 PF02770 Acyl-CoA dehydrogenase, middle domain BF29_1305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF29_1306 PF00108 Thiolase, N-terminal domain BF29_1306 PF02803 Thiolase, C-terminal domain BF29_1307 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF29_1307 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF29_1307 PF00378 Enoyl-CoA hydratase/isomerase BF29_1308 PF14115 YuzL-like protein BF29_131 PF00550 Phosphopantetheine attachment site BF29_1310 PF07875 Coat F domain BF29_1311 PF01098 Cell cycle protein BF29_1312 PF00085 Thioredoxin BF29_1315 PF00872 Transposase, Mutator family BF29_1318 PF00873 AcrB/AcrD/AcrF family BF29_1319 PF00563 EAL domain BF29_1319 PF00990 Diguanylate cyclase, GGDEF domain BF29_1319 PF03707 Bacterial signalling protein N terminal repeat BF29_132 PF00035 Double-stranded RNA binding motif BF29_132 PF14622 Ribonuclease-III-like BF29_1320 PF06628 Catalase-related immune-responsive BF29_1320 PF00199 Catalase BF29_1321 PF01569 PAP2 superfamily BF29_1322 PF01522 Polysaccharide deacetylase BF29_1323 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF29_1323 PF04101 Glycosyltransferase family 28 C-terminal domain BF29_1326 PF08281 Sigma-70, region 4 BF29_1326 PF04542 Sigma-70 region 2 BF29_1327 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BF29_133 PF06470 SMC proteins Flexible Hinge Domain BF29_133 PF02463 RecF/RecN/SMC N terminal domain BF29_1330 PF04055 Radical SAM superfamily BF29_1330 PF06968 Biotin and Thiamin Synthesis associated domain BF29_1331 PF00294 pfkB family carbohydrate kinase BF29_1332 PF04962 KduI/IolB family BF29_1335 PF02614 Glucuronate isomerase BF29_1336 PF08666 SAF domain BF29_1336 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BF29_1337 PF01232 Mannitol dehydrogenase Rossmann domain BF29_1337 PF08125 Mannitol dehydrogenase C-terminal domain BF29_1339 PF01081 KDPG and KHG aldolase BF29_134 PF00448 SRP54-type protein, GTPase domain BF29_134 PF02881 SRP54-type protein, helical bundle domain BF29_1340 PF01614 Bacterial transcriptional regulator BF29_1340 PF09339 IclR helix-turn-helix domain BF29_1343 PF00005 ABC transporter BF29_1343 PF12848 ABC transporter BF29_1346 PF01527 Transposase BF29_1347 PF13276 HTH-like domain BF29_1347 PF00665 Integrase core domain BF29_1347 PF13333 Integrase core domain BF29_135 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BF29_1353 PF01695 IstB-like ATP binding protein BF29_1357 PF01668 SmpB protein BF29_1358 PF00575 S1 RNA binding domain BF29_1358 PF08206 Ribonuclease B OB domain BF29_1358 PF17876 Cold shock domain BF29_1358 PF00773 RNB domain BF29_1359 PF12146 Serine aminopeptidase, S33 BF29_136 PF00448 SRP54-type protein, GTPase domain BF29_136 PF02978 Signal peptide binding domain BF29_136 PF02881 SRP54-type protein, helical bundle domain BF29_1360 PF03840 Preprotein translocase SecG subunit BF29_1361 PF00113 Enolase, C-terminal TIM barrel domain BF29_1361 PF03952 Enolase, N-terminal domain BF29_1363 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BF29_1363 PF01676 Metalloenzyme superfamily BF29_1364 PF00121 Triosephosphate isomerase BF29_1365 PF00162 Phosphoglycerate kinase BF29_1366 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BF29_1366 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF29_1367 PF04198 Putative sugar-binding domain BF29_1369 PF00309 Sigma-54 factor, Activator interacting domain (AID) BF29_1369 PF04552 Sigma-54, DNA binding domain BF29_1369 PF04963 Sigma-54 factor, core binding domain BF29_137 PF00886 Ribosomal protein S16 BF29_1375 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF29_1375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BF29_1375 PF01568 Molydopterin dinucleotide binding domain BF29_1375 PF00384 Molybdopterin oxidoreductase BF29_1375 PF12838 4Fe-4S dicluster domain BF29_1378 PF00905 Penicillin binding protein transpeptidase domain BF29_1378 PF00912 Transglycosylase BF29_1381 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF29_1381 PF00005 ABC transporter BF29_1382 PF00877 NlpC/P60 family BF29_1383 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF29_1384 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF29_1384 PF00005 ABC transporter BF29_1385 PF00528 Binding-protein-dependent transport system inner membrane component BF29_1385 PF12911 N-terminal TM domain of oligopeptide transport permease C BF29_1386 PF00528 Binding-protein-dependent transport system inner membrane component BF29_1387 PF07722 Peptidase C26 BF29_1388 PF01544 CorA-like Mg2+ transporter protein BF29_1389 PF14148 YhdB-like protein BF29_139 PF11068 YlqD protein BF29_1391 PF04293 SpoVR like protein BF29_1392 PF01757 Acyltransferase family BF29_1394 PF02600 Disulfide bond formation protein DsbB BF29_1398 PF01865 Protein of unknown function DUF47 BF29_1399 PF01384 Phosphate transporter family BF29_14 PF06335 Protein of unknown function (DUF1054) BF29_140 PF05239 PRC-barrel domain BF29_140 PF01782 RimM N-terminal domain BF29_1402 PF04285 Protein of unknown function (DUF444) BF29_1403 PF06798 PrkA serine protein kinase C-terminal domain BF29_1403 PF08298 PrkA AAA domain BF29_1404 PF00588 SpoU rRNA Methylase family BF29_1405 PF12671 Putative amidase domain BF29_1406 PF08331 Domain of unknown function (DUF1730) BF29_1407 PF01914 MarC family integral membrane protein BF29_1408 PF01368 DHH family BF29_1408 PF02833 DHHA2 domain BF29_1409 PF02915 Rubrerythrin BF29_141 PF01746 tRNA (Guanine-1)-methyltransferase BF29_1410 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF29_1411 PF00528 Binding-protein-dependent transport system inner membrane component BF29_1414 PF01226 Formate/nitrite transporter BF29_1417 PF02901 Pyruvate formate lyase-like BF29_1417 PF01228 Glycine radical BF29_1418 PF04055 Radical SAM superfamily BF29_1419 PF03358 NADPH-dependent FMN reductase BF29_142 PF01245 Ribosomal protein L19 BF29_1422 PF00005 ABC transporter BF29_1428 PF00296 Luciferase-like monooxygenase BF29_1429 PF00107 Zinc-binding dehydrogenase BF29_1429 PF08240 Alcohol dehydrogenase GroES-like domain BF29_143 PF10502 Signal peptidase, peptidase S26 BF29_144 PF01926 50S ribosome-binding GTPase BF29_145 PF01351 Ribonuclease HII BF29_1451 PF14540 Nucleotidyltransferase-like BF29_1451 PF18576 Helix-turn-helix domain BF29_1452 PF11023 Zinc-ribbon containing domain BF29_1453 PF03306 Alpha-acetolactate decarboxylase BF29_1454 PF00205 Thiamine pyrophosphate enzyme, central domain BF29_1454 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF29_1454 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF29_1455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF29_1455 PF03466 LysR substrate binding domain BF29_1456 PF00027 Cyclic nucleotide-binding domain BF29_1456 PF13545 Crp-like helix-turn-helix domain BF29_1458 PF01475 Ferric uptake regulator family BF29_1459 PF01923 Cobalamin adenosyltransferase BF29_1460 PF07885 Ion channel BF29_1462 PF00202 Aminotransferase class-III BF29_1463 PF10942 Protein of unknown function (DUF2619) BF29_1464 PF06081 Aromatic acid exporter family member 1 BF29_1465 PF01418 Helix-turn-helix domain, rpiR family BF29_1465 PF01380 SIS domain BF29_1466 PF02378 Phosphotransferase system, EIIC BF29_1466 PF00367 phosphotransferase system, EIIB BF29_1467 PF01380 SIS domain BF29_147 PF01312 FlhB HrpN YscU SpaS Family BF29_1470 PF00664 ABC transporter transmembrane region BF29_1470 PF00005 ABC transporter BF29_1471 PF04167 Protein of unknown function (DUF402) BF29_1472 PF14182 YgaB-like protein BF29_1475 PF03466 LysR substrate binding domain BF29_1475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF29_1476 PF00310 Glutamine amidotransferases class-II BF29_1476 PF04898 Glutamate synthase central domain BF29_1476 PF01645 Conserved region in glutamate synthase BF29_1476 PF01493 GXGXG motif BF29_1478 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BF29_1478 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_148 PF00549 CoA-ligase BF29_148 PF08442 ATP-grasp domain BF29_1480 PF14815 NUDIX domain BF29_1480 PF00730 HhH-GPD superfamily base excision DNA repair protein BF29_1481 PF04307 LexA-binding, inner membrane-associated putative hydrolase BF29_1482 PF08176 Small acid-soluble spore protein K family BF29_1483 PF08838 Protein of unknown function (DUF1811) BF29_1484 PF02631 RecX family BF29_1486 PF14151 YfhD-like protein BF29_1487 PF00290 Tryptophan synthase alpha chain BF29_1489 PF00291 Pyridoxal-phosphate dependent enzyme BF29_149 PF02629 CoA binding domain BF29_149 PF00549 CoA-ligase BF29_1490 PF00218 Indole-3-glycerol phosphate synthase BF29_1492 PF00117 Glutamine amidotransferase class-I BF29_1492 PF02885 Glycosyl transferase family, helical bundle domain BF29_1492 PF00591 Glycosyl transferase family, a/b domain BF29_1494 PF00005 ABC transporter BF29_1494 PF12704 MacB-like periplasmic core domain BF29_1494 PF02687 FtsX-like permease family BF29_1495 PF00343 Carbohydrate phosphorylase BF29_1497 PF02743 Cache domain BF29_1497 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF29_1497 PF00672 HAMP domain BF29_1498 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF29_1498 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF29_1499 PF00266 Aminotransferase class-V BF29_150 PF02481 DNA recombination-mediator protein A BF29_1500 PF01842 ACT domain BF29_1500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF29_1500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF29_1503 PF00291 Pyridoxal-phosphate dependent enzyme BF29_1503 PF13291 ACT domain BF29_1504 PF00694 Aconitase C-terminal domain BF29_1505 PF00330 Aconitase family (aconitate hydratase) BF29_1506 PF00180 Isocitrate/isopropylmalate dehydrogenase BF29_1507 PF00682 HMGL-like BF29_1507 PF08502 LeuA allosteric (dimerisation) domain BF29_1508 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BF29_1508 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BF29_1509 PF10369 Small subunit of acetolactate synthase BF29_1509 PF01842 ACT domain BF29_1510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF29_1510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF29_1510 PF00205 Thiamine pyrophosphate enzyme, central domain BF29_1511 PF00920 Dehydratase family BF29_1512 PF05525 Branched-chain amino acid transport protein BF29_1513 PF01740 STAS domain BF29_1515 PF01027 Inhibitor of apoptosis-promoting Bax1 BF29_1516 PF00067 Cytochrome P450 BF29_1517 PF01717 Cobalamin-independent synthase, Catalytic domain BF29_1518 PF07690 Major Facilitator Superfamily BF29_1519 PF00072 Response regulator receiver domain BF29_1519 PF04397 LytTr DNA-binding domain BF29_1520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_1520 PF06580 Histidine kinase BF29_1520 PF07694 5TMR of 5TMR-LYT BF29_1521 PF17763 Glutaminase/Asparaginase C-terminal domain BF29_1521 PF00710 Asparaginase, N-terminal BF29_1522 PF07732 Multicopper oxidase BF29_1522 PF07731 Multicopper oxidase BF29_1522 PF00394 Multicopper oxidase BF29_1523 PF17932 Tetracyclin repressor-like, C-terminal domain BF29_1523 PF00440 Bacterial regulatory proteins, tetR family BF29_153 PF01396 Topoisomerase DNA binding C4 zinc finger BF29_153 PF01131 DNA topoisomerase BF29_153 PF01751 Toprim domain BF29_1531 PF05675 Protein of unknown function (DUF817) BF29_1532 PF13443 Cro/C1-type HTH DNA-binding domain BF29_1533 PF11188 Protein of unknown function (DUF2975) BF29_1535 PF00375 Sodium:dicarboxylate symporter family BF29_1536 PF04306 Protein of unknown function (DUF456) BF29_154 PF00589 Phage integrase family BF29_154 PF02899 Phage integrase, N-terminal SAM-like domain BF29_1540 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) BF29_1541 PF01207 Dihydrouridine synthase (Dus) BF29_1542 PF01810 LysE type translocator BF29_1545 PF00005 ABC transporter BF29_1545 PF00664 ABC transporter transmembrane region BF29_1547 PF00005 ABC transporter BF29_1547 PF00664 ABC transporter transmembrane region BF29_1548 PF01047 MarR family BF29_1549 PF01938 TRAM domain BF29_1549 PF05958 tRNA (Uracil-5-)-methyltransferase BF29_155 PF00227 Proteasome subunit BF29_1550 PF00730 HhH-GPD superfamily base excision DNA repair protein BF29_1551 PF01522 Polysaccharide deacetylase BF29_1553 PF14167 YfkD-like protein BF29_1554 PF01699 Sodium/calcium exchanger protein BF29_1555 PF07690 Major Facilitator Superfamily BF29_1556 PF03631 Virulence factor BrkB BF29_1557 PF06569 Protein of unknown function (DUF1128) BF29_1558 PF00557 Metallopeptidase family M24 BF29_1559 PF01965 DJ-1/PfpI family BF29_156 PF00004 ATPase family associated with various cellular activities (AAA) BF29_156 PF07724 AAA domain (Cdc48 subfamily) BF29_156 PF10431 C-terminal, D2-small domain, of ClpB protein BF29_1561 PF13677 Membrane MotB of proton-channel complex MotA/MotB BF29_1561 PF00691 OmpA family BF29_1562 PF01618 MotA/TolQ/ExbB proton channel family BF29_1563 PF09350 Domain of unknown function (DUF1992) BF29_1564 PF04343 Protein of unknown function, DUF488 BF29_1566 PF07690 Major Facilitator Superfamily BF29_1567 PF01258 Prokaryotic dksA/traR C4-type zinc finger BF29_1568 PF03061 Thioesterase superfamily BF29_157 PF08222 CodY helix-turn-helix domain BF29_157 PF06018 CodY GAF-like domain BF29_1570 PF01145 SPFH domain / Band 7 family BF29_1570 PF15975 Flotillin BF29_1572 PF01053 Cys/Met metabolism PLP-dependent enzyme BF29_1573 PF00291 Pyridoxal-phosphate dependent enzyme BF29_1574 PF02664 S-Ribosylhomocysteinase (LuxS) BF29_1575 PF08241 Methyltransferase domain BF29_1576 PF00484 Carbonic anhydrase BF29_158 PF00460 Flagella basal body rod protein BF29_1580 PF00196 Bacterial regulatory proteins, luxR family BF29_1580 PF00072 Response regulator receiver domain BF29_1584 PF06207 Protein of unknown function (DUF1002) BF29_1585 PF01418 Helix-turn-helix domain, rpiR family BF29_1585 PF01380 SIS domain BF29_1586 PF02872 5'-nucleotidase, C-terminal domain BF29_1586 PF00149 Calcineurin-like phosphoesterase BF29_1587 PF00375 Sodium:dicarboxylate symporter family BF29_1588 PF00300 Histidine phosphatase superfamily (branch 1) BF29_1589 PF01381 Helix-turn-helix BF29_159 PF00460 Flagella basal body rod protein BF29_159 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF29_1595 PF09827 CRISPR associated protein Cas2 BF29_1596 PF01867 CRISPR associated protein Cas1 BF29_16 PF00459 Inositol monophosphatase family BF29_160 PF02049 Flagellar hook-basal body complex protein FliE BF29_1603 PF01695 IstB-like ATP binding protein BF29_1608 PF01695 IstB-like ATP binding protein BF29_161 PF01514 Secretory protein of YscJ/FliF family BF29_161 PF08345 Flagellar M-ring protein C-terminal BF29_1610 PF13276 HTH-like domain BF29_1610 PF13333 Integrase core domain BF29_1610 PF00665 Integrase core domain BF29_1611 PF01527 Transposase BF29_1613 PF09704 CRISPR-associated protein (Cas_Cas5) BF29_1615 PF00271 Helicase conserved C-terminal domain BF29_1615 PF04434 SWIM zinc finger BF29_1615 PF00176 SNF2 family N-terminal domain BF29_1616 PF00881 Nitroreductase family BF29_1619 PF01070 FMN-dependent dehydrogenase BF29_162 PF01706 FliG C-terminal domain BF29_162 PF14842 FliG N-terminal domain BF29_162 PF14841 FliG middle domain BF29_1621 PF12728 Helix-turn-helix domain BF29_1622 PF00999 Sodium/hydrogen exchanger family BF29_1623 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF29_1623 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF29_1624 PF00455 DeoR C terminal sensor domain BF29_1624 PF08220 DeoR-like helix-turn-helix domain BF29_1625 PF00465 Iron-containing alcohol dehydrogenase BF29_1626 PF04405 Domain of Unknown function (DUF542) BF29_1626 PF01814 Hemerythrin HHE cation binding domain BF29_163 PF02108 Flagellar assembly protein FliH BF29_1630 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF29_1631 PF00083 Sugar (and other) transporter BF29_1632 PF04055 Radical SAM superfamily BF29_1634 PF17370 Family of unknown function (DUF5392) BF29_1638 PF00795 Carbon-nitrogen hydrolase BF29_1639 PF00324 Amino acid permease BF29_164 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF29_164 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF29_164 PF18269 T3SS EscN ATPase C-terminal domain BF29_1640 PF00202 Aminotransferase class-III BF29_1641 PF03610 PTS system fructose IIA component BF29_1642 PF02734 DAK2 domain BF29_1643 PF02733 Dak1 domain BF29_1645 PF13386 Cytochrome C biogenesis protein transmembrane region BF29_1646 PF01774 UreD urease accessory protein BF29_1647 PF02492 CobW/HypB/UreG, nucleotide-binding domain BF29_1648 PF01730 UreF BF29_1649 PF05194 UreE urease accessory protein, C-terminal domain BF29_1649 PF02814 UreE urease accessory protein, N-terminal domain BF29_165 PF02050 Flagellar FliJ protein BF29_1650 PF00449 Urease alpha-subunit, N-terminal domain BF29_1650 PF01979 Amidohydrolase family BF29_1651 PF00699 Urease beta subunit BF29_1652 PF00547 Urease, gamma subunit BF29_1653 PF00795 Carbon-nitrogen hydrolase BF29_1655 PF00795 Carbon-nitrogen hydrolase BF29_1656 PF02954 Bacterial regulatory protein, Fis family BF29_1656 PF00158 Sigma-54 interaction domain BF29_1656 PF13188 PAS domain BF29_1657 PF00881 Nitroreductase family BF29_1658 PF00324 Amino acid permease BF29_1659 PF01925 Sulfite exporter TauE/SafE BF29_1660 PF00860 Permease family BF29_1661 PF13361 UvrD-like helicase C-terminal domain BF29_1661 PF00580 UvrD/REP helicase N-terminal domain BF29_1662 PF00253 Ribosomal protein S14p/S29e BF29_1667 PF04463 Protein of unknown function (DUF523) BF29_1668 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_1674 PF00202 Aminotransferase class-III BF29_1675 PF13426 PAS domain BF29_1675 PF00158 Sigma-54 interaction domain BF29_1675 PF02954 Bacterial regulatory protein, Fis family BF29_1676 PF01420 Type I restriction modification DNA specificity domain BF29_1677 PF02384 N-6 DNA Methylase BF29_1679 PF04851 Type III restriction enzyme, res subunit BF29_1679 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BF29_1679 PF00271 Helicase conserved C-terminal domain BF29_1679 PF08463 EcoEI R protein C-terminal BF29_168 PF03963 Flagellar hook capping protein - N-terminal region BF29_1680 PF00324 Amino acid permease BF29_1681 PF00440 Bacterial regulatory proteins, tetR family BF29_1684 PF00005 ABC transporter BF29_1685 PF00274 Fructose-bisphosphate aldolase class-I BF29_1693 PF00293 NUDIX domain BF29_1694 PF14338 Mrr N-terminal domain BF29_1694 PF04471 Restriction endonuclease BF29_1695 PF18766 SWI2/SNF2 ATPase BF29_1695 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BF29_1695 PF12008 Type I restriction and modification enzyme - subunit R C terminal BF29_1697 PF02384 N-6 DNA Methylase BF29_1697 PF12161 HsdM N-terminal domain BF29_1699 PF01810 LysE type translocator BF29_170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF29_170 PF00460 Flagella basal body rod protein BF29_1700 PF00255 Glutathione peroxidase BF29_1701 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF29_1702 PF02056 Family 4 glycosyl hydrolase BF29_1702 PF11975 Family 4 glycosyl hydrolase C-terminal domain BF29_1705 PF08892 YqcI/YcgG family BF29_1707 PF00589 Phage integrase family BF29_1709 PF01527 Transposase BF29_171 PF03748 Flagellar basal body-associated protein FliL BF29_1710 PF13333 Integrase core domain BF29_1710 PF00665 Integrase core domain BF29_1710 PF13276 HTH-like domain BF29_1713 PF03466 LysR substrate binding domain BF29_1713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF29_1714 PF00375 Sodium:dicarboxylate symporter family BF29_1715 PF04055 Radical SAM superfamily BF29_1717 PF03477 ATP cone domain BF29_1717 PF13597 Anaerobic ribonucleoside-triphosphate reductase BF29_1719 PF00107 Zinc-binding dehydrogenase BF29_1719 PF08240 Alcohol dehydrogenase GroES-like domain BF29_172 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF29_172 PF02154 Flagellar motor switch protein FliM BF29_1720 PF02595 Glycerate kinase family BF29_1721 PF12323 Helix-turn-helix domain BF29_1721 PF01385 Probable transposase BF29_1721 PF07282 Putative transposase DNA-binding domain BF29_1722 PF00665 Integrase core domain BF29_1722 PF13333 Integrase core domain BF29_1722 PF13276 HTH-like domain BF29_1723 PF01527 Transposase BF29_1726 PF07987 Domain of unkown function (DUF1775) BF29_1727 PF04234 CopC domain BF29_1727 PF05425 Copper resistance protein D BF29_1727 PF13115 YtkA-like BF29_173 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BF29_173 PF04509 CheC-like family BF29_1734 PF13188 PAS domain BF29_1734 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_1734 PF00512 His Kinase A (phospho-acceptor) domain BF29_1734 PF00989 PAS fold BF29_1734 PF13426 PAS domain BF29_1735 PF00109 Beta-ketoacyl synthase, N-terminal domain BF29_1735 PF02801 Beta-ketoacyl synthase, C-terminal domain BF29_1736 PF00313 'Cold-shock' DNA-binding domain BF29_1739 PF01915 Glycosyl hydrolase family 3 C-terminal domain BF29_1739 PF00933 Glycosyl hydrolase family 3 N terminal domain BF29_174 PF00072 Response regulator receiver domain BF29_1740 PF00144 Beta-lactamase BF29_1741 PF07075 Protein of unknown function (DUF1343) BF29_1742 PF00005 ABC transporter BF29_1742 PF00664 ABC transporter transmembrane region BF29_1743 PF00005 ABC transporter BF29_1743 PF00664 ABC transporter transmembrane region BF29_1745 PF01476 LysM domain BF29_1745 PF00877 NlpC/P60 family BF29_175 PF04347 Flagellar biosynthesis protein, FliO BF29_1752 PF00795 Carbon-nitrogen hydrolase BF29_1752 PF00583 Acetyltransferase (GNAT) family BF29_1753 PF10055 Uncharacterized small protein (DUF2292) BF29_1754 PF03358 NADPH-dependent FMN reductase BF29_1755 PF00005 ABC transporter BF29_1756 PF00528 Binding-protein-dependent transport system inner membrane component BF29_1757 PF00296 Luciferase-like monooxygenase BF29_1758 PF09084 NMT1/THI5 like BF29_1759 PF00478 IMP dehydrogenase / GMP reductase domain BF29_176 PF00813 FliP family BF29_1760 PF08267 Cobalamin-independent synthase, N-terminal domain BF29_1760 PF01717 Cobalamin-independent synthase, Catalytic domain BF29_1761 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF29_1762 PF01791 DeoC/LacD family aldolase BF29_1763 PF02885 Glycosyl transferase family, helical bundle domain BF29_1763 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BF29_1763 PF00591 Glycosyl transferase family, a/b domain BF29_1764 PF01676 Metalloenzyme superfamily BF29_1765 PF04198 Putative sugar-binding domain BF29_1766 PF01048 Phosphorylase superfamily BF29_1767 PF07662 Na+ dependent nucleoside transporter C-terminus BF29_1767 PF01773 Na+ dependent nucleoside transporter N-terminus BF29_1768 PF00860 Permease family BF29_1769 PF01470 Pyroglutamyl peptidase BF29_177 PF01313 Bacterial export proteins, family 3 BF29_1772 PF03746 LamB/YcsF family BF29_1773 PF02626 Carboxyltransferase domain, subdomain A and B BF29_1774 PF02682 Carboxyltransferase domain, subdomain C and D BF29_1775 PF07690 Major Facilitator Superfamily BF29_1776 PF02566 OsmC-like protein BF29_1777 PF00005 ABC transporter BF29_1778 PF00528 Binding-protein-dependent transport system inner membrane component BF29_1779 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF29_178 PF01311 Bacterial export proteins, family 1 BF29_1780 PF01546 Peptidase family M20/M25/M40 BF29_1780 PF07687 Peptidase dimerisation domain BF29_1781 PF00183 Hsp90 protein BF29_1786 PF01266 FAD dependent oxidoreductase BF29_1788 PF08240 Alcohol dehydrogenase GroES-like domain BF29_1788 PF00107 Zinc-binding dehydrogenase BF29_179 PF01312 FlhB HrpN YscU SpaS Family BF29_180 PF00771 FHIPEP family BF29_1804 PF12102 Domain of unknown function (DUF3578) BF29_1804 PF07728 AAA domain (dynein-related subfamily) BF29_181 PF00448 SRP54-type protein, GTPase domain BF29_1818 PF01695 IstB-like ATP binding protein BF29_182 PF10609 NUBPL iron-transfer P-loop NTPase BF29_1826 PF01527 Transposase BF29_1827 PF00145 C-5 cytosine-specific DNA methylase BF29_183 PF01339 CheB methylesterase BF29_183 PF00072 Response regulator receiver domain BF29_1832 PF01938 TRAM domain BF29_1832 PF02475 Met-10+ like-protein BF29_1832 PF05958 tRNA (Uracil-5-)-methyltransferase BF29_1833 PF00474 Sodium:solute symporter family BF29_1834 PF00781 Diacylglycerol kinase catalytic domain BF29_1838 PF02637 GatB domain BF29_1838 PF02934 GatB/GatE catalytic domain BF29_1839 PF01425 Amidase BF29_184 PF07194 P2 response regulator binding domain BF29_184 PF01584 CheW-like domain BF29_184 PF01627 Hpt domain BF29_184 PF02895 Signal transducing histidine kinase, homodimeric domain BF29_184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_1840 PF02686 Glu-tRNAGln amidotransferase C subunit BF29_1841 PF00463 Isocitrate lyase family BF29_1842 PF01274 Malate synthase BF29_1843 PF07537 CamS sex pheromone cAM373 precursor BF29_1844 PF00533 BRCA1 C Terminus (BRCT) domain BF29_1844 PF12826 Helix-hairpin-helix motif BF29_1844 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BF29_1844 PF01653 NAD-dependent DNA ligase adenylation domain BF29_1844 PF03120 NAD-dependent DNA ligase OB-fold domain BF29_1845 PF00580 UvrD/REP helicase N-terminal domain BF29_1845 PF13361 UvrD-like helicase C-terminal domain BF29_1846 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BF29_1847 PF00580 UvrD/REP helicase N-terminal domain BF29_1847 PF13361 UvrD-like helicase C-terminal domain BF29_1848 PF01884 PcrB family BF29_1849 PF01371 Trp repressor protein BF29_185 PF01584 CheW-like domain BF29_1850 PF11258 Protein of unknown function (DUF3048) N-terminal domain BF29_1850 PF17479 Protein of unknown function (DUF3048) C-terminal domain BF29_1851 PF13382 Adenine deaminase C-terminal domain BF29_1851 PF01979 Amidohydrolase family BF29_1853 PF02844 Phosphoribosylglycinamide synthetase, N domain BF29_1853 PF02843 Phosphoribosylglycinamide synthetase, C domain BF29_1853 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BF29_1855 PF02142 MGS-like domain BF29_1855 PF01808 AICARFT/IMPCHase bienzyme BF29_1856 PF00551 Formyl transferase BF29_1857 PF02769 AIR synthase related protein, C-terminal domain BF29_1857 PF00586 AIR synthase related protein, N-terminal domain BF29_1858 PF00156 Phosphoribosyl transferase domain BF29_1859 PF02769 AIR synthase related protein, C-terminal domain BF29_1859 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BF29_1859 PF00586 AIR synthase related protein, N-terminal domain BF29_186 PF04509 CheC-like family BF29_1861 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BF29_1862 PF01259 SAICAR synthetase BF29_1863 PF00206 Lyase BF29_1863 PF10397 Adenylosuccinate lyase C-terminus BF29_1864 PF02222 ATP-grasp domain BF29_1864 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BF29_1865 PF00731 AIR carboxylase BF29_1867 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF29_1868 PF01323 DSBA-like thioredoxin domain BF29_187 PF03975 CheD chemotactic sensory transduction BF29_1875 PF12323 Helix-turn-helix domain BF29_1875 PF01385 Probable transposase BF29_1875 PF07282 Putative transposase DNA-binding domain BF29_1876 PF01527 Transposase BF29_1877 PF00665 Integrase core domain BF29_1877 PF13276 HTH-like domain BF29_1877 PF13333 Integrase core domain BF29_188 PF04542 Sigma-70 region 2 BF29_188 PF04545 Sigma-70, region 4 BF29_188 PF04539 Sigma-70 region 3 BF29_1880 PF00375 Sodium:dicarboxylate symporter family BF29_1881 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF29_1881 PF02378 Phosphotransferase system, EIIC BF29_1881 PF00367 phosphotransferase system, EIIB BF29_1882 PF03123 CAT RNA binding domain BF29_1882 PF00874 PRD domain BF29_1883 PF00860 Permease family BF29_1885 PF00664 ABC transporter transmembrane region BF29_1885 PF00005 ABC transporter BF29_1886 PF07690 Major Facilitator Superfamily BF29_1890 PF00939 Sodium:sulfate symporter transmembrane region BF29_1897 PF00872 Transposase, Mutator family BF29_1899 PF00872 Transposase, Mutator family BF29_19 PF14036 YlaH-like protein BF29_190 PF00318 Ribosomal protein S2 BF29_1901 PF00005 ABC transporter BF29_1902 PF00392 Bacterial regulatory proteins, gntR family BF29_1903 PF03551 Transcriptional regulator PadR-like family BF29_1903 PF10400 Virulence activator alpha C-term BF29_1904 PF05870 Phenolic acid decarboxylase (PAD) BF29_1905 PF13460 NAD(P)H-binding BF29_1906 PF02082 Transcriptional regulator BF29_1908 PF04055 Radical SAM superfamily BF29_191 PF00889 Elongation factor TS BF29_1910 PF00005 ABC transporter BF29_1914 PF13005 zinc-finger binding domain of transposase IS66 BF29_1914 PF03050 Transposase IS66 family BF29_1914 PF13007 Transposase C of IS166 homeodomain BF29_1914 PF13817 IS66 C-terminal element BF29_1915 PF00325 Bacterial regulatory proteins, crp family BF29_1915 PF00027 Cyclic nucleotide-binding domain BF29_1916 PF01206 Sulfurtransferase TusA BF29_1917 PF00392 Bacterial regulatory proteins, gntR family BF29_1917 PF00155 Aminotransferase class I and II BF29_1918 PF01810 LysE type translocator BF29_192 PF00696 Amino acid kinase family BF29_1922 PF01206 Sulfurtransferase TusA BF29_1923 PF04143 Sulphur transport BF29_1927 PF17340 Family of unknown function (DUF5370) BF29_1929 PF00005 ABC transporter BF29_193 PF01765 Ribosome recycling factor BF29_1930 PF01032 FecCD transport family BF29_1936 PF07690 Major Facilitator Superfamily BF29_194 PF01255 Putative undecaprenyl diphosphate synthase BF29_1940 PF00958 GMP synthase C terminal domain BF29_1940 PF02540 NAD synthase BF29_1940 PF00117 Glutamine amidotransferase class-I BF29_1942 PF02540 NAD synthase BF29_1943 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BF29_1943 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BF29_1943 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BF29_1944 PF00857 Isochorismatase family BF29_1945 PF13378 Enolase C-terminal domain-like BF29_1945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF29_1947 PF00535 Glycosyl transferase family 2 BF29_1948 PF04138 GtrA-like protein BF29_1949 PF00118 TCP-1/cpn60 chaperonin family BF29_1950 PF00166 Chaperonin 10 Kd subunit BF29_1951 PF02517 CPBP intramembrane metalloprotease BF29_1954 PF00902 Sec-independent protein translocase protein (TatC) BF29_1955 PF02629 CoA binding domain BF29_1955 PF06971 Putative DNA-binding protein N-terminus BF29_1957 PF00005 ABC transporter BF29_1957 PF16326 ABC transporter C-terminal domain BF29_1957 PF12848 ABC transporter BF29_1958 PF00814 Glycoprotease family BF29_1959 PF00583 Acetyltransferase (GNAT) family BF29_196 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BF29_196 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BF29_196 PF13288 DXP reductoisomerase C-terminal domain BF29_1960 PF00814 Glycoprotease family BF29_1961 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BF29_197 PF02163 Peptidase family M50 BF29_197 PF13180 PDZ domain BF29_198 PF04073 Aminoacyl-tRNA editing domain BF29_198 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF29_198 PF03129 Anticodon binding domain BF29_1982 PF10263 SprT-like family BF29_1982 PF17283 SprT-like zinc ribbon domain BF29_1983 PF16921 Tex protein YqgF-like domain BF29_1983 PF17674 HHH domain BF29_1983 PF09371 Tex-like protein N-terminal domain BF29_1983 PF00575 S1 RNA binding domain BF29_1984 PF07228 Stage II sporulation protein E (SpoIIE) BF29_1985 PF04539 Sigma-70 region 3 BF29_1985 PF04542 Sigma-70 region 2 BF29_1985 PF04545 Sigma-70, region 4 BF29_1986 PF13581 Histidine kinase-like ATPase domain BF29_1987 PF01740 STAS domain BF29_1988 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain BF29_1988 PF07228 Stage II sporulation protein E (SpoIIE) BF29_1989 PF13581 Histidine kinase-like ATPase domain BF29_199 PF14579 Helix-hairpin-helix motif BF29_199 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BF29_199 PF07733 Bacterial DNA polymerase III alpha NTPase domain BF29_199 PF11490 DNA polymerase III polC-type N-terminus II BF29_199 PF14480 DNA polymerase III polC-type N-terminus I BF29_199 PF00929 Exonuclease BF29_199 PF02811 PHP domain BF29_1990 PF01740 STAS domain BF29_1991 PF01740 STAS domain BF29_1991 PF08678 Rsbr N terminal BF29_1992 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BF29_1993 PF01402 Ribbon-helix-helix protein, copG family BF29_1994 PF01168 Alanine racemase, N-terminal domain BF29_1994 PF00842 Alanine racemase, C-terminal domain BF29_1996 PF01648 4'-phosphopantetheinyl transferase superfamily BF29_1997 PF01694 Rhomboid family BF29_1998 PF07282 Putative transposase DNA-binding domain BF29_1998 PF01385 Probable transposase BF29_1998 PF12323 Helix-turn-helix domain BF29_2 PF01546 Peptidase family M20/M25/M40 BF29_2 PF07687 Peptidase dimerisation domain BF29_20 PF02562 PhoH-like protein BF29_20 PF13638 PIN domain BF29_200 PF02576 RimP N-terminal domain BF29_200 PF17384 RimP C-terminal SH3 domain BF29_2000 PF00270 DEAD/DEAH box helicase BF29_2000 PF00271 Helicase conserved C-terminal domain BF29_2001 PF01810 LysE type translocator BF29_2002 PF13419 Haloacid dehalogenase-like hydrolase BF29_2003 PF00356 Bacterial regulatory proteins, lacI family BF29_2005 PF02903 Alpha amylase, N-terminal ig-like domain BF29_2005 PF00128 Alpha amylase, catalytic domain BF29_2006 PF13416 Bacterial extracellular solute-binding protein BF29_2007 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2008 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2009 PF06691 Protein of unknown function (DUF1189) BF29_201 PF00575 S1 RNA binding domain BF29_201 PF13184 NusA-like KH domain BF29_201 PF08529 NusA N-terminal domain BF29_2010 PF03636 Glycosyl hydrolase family 65, N-terminal domain BF29_2010 PF03633 Glycosyl hydrolase family 65, C-terminal domain BF29_2010 PF03632 Glycosyl hydrolase family 65 central catalytic domain BF29_2011 PF16657 Maltogenic Amylase, C-terminal domain BF29_2011 PF00128 Alpha amylase, catalytic domain BF29_2012 PF01225 Mur ligase family, catalytic domain BF29_2012 PF02875 Mur ligase family, glutamate ligase domain BF29_2012 PF08245 Mur ligase middle domain BF29_2013 PF01820 D-ala D-ala ligase N-terminus BF29_2013 PF07478 D-ala D-ala ligase C-terminus BF29_2017 PF00571 CBS domain BF29_2017 PF03471 Transporter associated domain BF29_2017 PF01595 Cyclin M transmembrane N-terminal domain BF29_2018 PF13411 MerR HTH family regulatory protein BF29_2019 PF01595 Cyclin M transmembrane N-terminal domain BF29_2019 PF00571 CBS domain BF29_2019 PF03471 Transporter associated domain BF29_202 PF04296 Protein of unknown function (DUF448) BF29_2023 PF00271 Helicase conserved C-terminal domain BF29_2023 PF00176 SNF2 family N-terminal domain BF29_2023 PF12419 SNF2 Helicase protein BF29_2025 PF14183 YwpF-like protein BF29_2026 PF00436 Single-strand binding protein family BF29_2028 PF07977 FabA-like domain BF29_2029 PF00460 Flagella basal body rod protein BF29_2029 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF29_203 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF29_2030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF29_2030 PF00460 Flagella basal body rod protein BF29_2032 PF12116 Stage III sporulation protein D BF29_2033 PF01551 Peptidase family M23 BF29_2034 PF08486 Stage II sporulation protein BF29_2035 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF29_2038 PF06612 Protein of unknown function (DUF1146) BF29_2039 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BF29_2039 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BF29_204 PF04760 Translation initiation factor IF-2, N-terminal region BF29_204 PF11987 Translation-initiation factor 2 BF29_204 PF00009 Elongation factor Tu GTP binding domain BF29_2040 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF29_2040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF29_2041 PF00231 ATP synthase BF29_2042 PF02874 ATP synthase alpha/beta family, beta-barrel domain BF29_2042 PF00306 ATP synthase alpha/beta chain, C terminal domain BF29_2042 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF29_2043 PF00213 ATP synthase delta (OSCP) subunit BF29_2044 PF00430 ATP synthase B/B' CF(0) BF29_2045 PF00137 ATP synthase subunit C BF29_2046 PF00119 ATP synthase A chain BF29_2047 PF03899 ATP synthase I chain BF29_2049 PF00464 Serine hydroxymethyltransferase BF29_205 PF04456 Protein of unknown function (DUF503) BF29_2051 PF04260 Protein of unknown function (DUF436) BF29_2052 PF02502 Ribose/Galactose Isomerase BF29_2053 PF00672 HAMP domain BF29_2053 PF02743 Cache domain BF29_2053 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF29_2054 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF29_2057 PF01522 Polysaccharide deacetylase BF29_206 PF02033 Ribosome-binding factor A BF29_2061 PF01522 Polysaccharide deacetylase BF29_2065 PF02659 Putative manganese efflux pump BF29_2066 PF01300 Telomere recombination BF29_2066 PF03481 Putative GTP-binding controlling metal-binding BF29_2067 PF09551 Stage II sporulation protein R (spore_II_R) BF29_2068 PF17827 PrmC N-terminal domain BF29_2068 PF13847 Methyltransferase domain BF29_2069 PF03462 PCRF domain BF29_2069 PF00472 RF-1 domain BF29_207 PF01509 TruB family pseudouridylate synthase (N terminal domain) BF29_207 PF16198 tRNA pseudouridylate synthase B C-terminal domain BF29_2071 PF00265 Thymidine kinase BF29_2072 PF01197 Ribosomal protein L31 BF29_2073 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BF29_2073 PF07497 Rho termination factor, RNA-binding domain BF29_2073 PF07498 Rho termination factor, N-terminal domain BF29_2075 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BF29_2076 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF29_2077 PF00923 Transaldolase/Fructose-6-phosphate aldolase BF29_2078 PF01116 Fructose-bisphosphate aldolase class-II BF29_2079 PF00072 Response regulator receiver domain BF29_208 PF01687 Riboflavin kinase BF29_208 PF06574 FAD synthetase BF29_2083 PF01527 Transposase BF29_2084 PF00665 Integrase core domain BF29_2084 PF13333 Integrase core domain BF29_2084 PF13276 HTH-like domain BF29_2085 PF00005 ABC transporter BF29_2086 PF00392 Bacterial regulatory proteins, gntR family BF29_2087 PF00117 Glutamine amidotransferase class-I BF29_2087 PF06418 CTP synthase N-terminus BF29_2088 PF05066 HB1, ASXL, restriction endonuclease HTH domain BF29_209 PF00312 Ribosomal protein S15 BF29_2092 PF08359 YsiA-like protein, C-terminal region BF29_2092 PF00440 Bacterial regulatory proteins, tetR family BF29_2093 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF29_2093 PF02770 Acyl-CoA dehydrogenase, middle domain BF29_2093 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF29_2094 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF29_2094 PF02770 Acyl-CoA dehydrogenase, middle domain BF29_2094 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF29_2095 PF02803 Thiolase, C-terminal domain BF29_2095 PF00108 Thiolase, N-terminal domain BF29_2096 PF02754 Cysteine-rich domain BF29_2096 PF13183 4Fe-4S dicluster domain BF29_2097 PF13091 PLD-like domain BF29_2098 PF05746 DALR anticodon binding domain BF29_2098 PF00750 tRNA synthetases class I (R) BF29_2098 PF03485 Arginyl tRNA synthetase N terminal domain BF29_210 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BF29_210 PF00013 KH domain BF29_210 PF03725 3' exoribonuclease family, domain 2 BF29_210 PF00575 S1 RNA binding domain BF29_210 PF01138 3' exoribonuclease family, domain 1 BF29_2100 PF00491 Arginase family BF29_2101 PF00912 Transglycosylase BF29_2101 PF00905 Penicillin binding protein transpeptidase domain BF29_2102 PF08741 YwhD family BF29_2103 PF02163 Peptidase family M50 BF29_2104 PF01361 Tautomerase enzyme BF29_2106 PF01966 HD domain BF29_2108 PF03099 Biotin/lipoate A/B protein ligase family BF29_211 PF01522 Polysaccharide deacetylase BF29_2110 PF01515 Phosphate acetyl/butaryl transferase BF29_2113 PF01385 Probable transposase BF29_2113 PF07282 Putative transposase DNA-binding domain BF29_2113 PF12323 Helix-turn-helix domain BF29_2114 PF01527 Transposase BF29_2115 PF13333 Integrase core domain BF29_2115 PF13276 HTH-like domain BF29_2115 PF00665 Integrase core domain BF29_2116 PF09671 Spore coat protein (Spore_GerQ) BF29_2117 PF04241 Protein of unknown function (DUF423) BF29_2118 PF17261 Family of unknown function (DUF5327) BF29_2119 PF03167 Uracil DNA glycosylase superfamily BF29_212 PF05193 Peptidase M16 inactive domain BF29_212 PF00675 Insulinase (Peptidase family M16) BF29_2120 PF11181 Heat induced stress protein YflT BF29_2125 PF13378 Enolase C-terminal domain-like BF29_2125 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BF29_2127 PF07687 Peptidase dimerisation domain BF29_2127 PF01546 Peptidase family M20/M25/M40 BF29_2129 PF08543 Phosphomethylpyrimidine kinase BF29_213 PF05239 PRC-barrel domain BF29_2131 PF02585 GlcNAc-PI de-N-acetylase BF29_2133 PF00570 HRDC domain BF29_2133 PF16124 RecQ zinc-binding BF29_2133 PF09382 RQC domain BF29_2133 PF00271 Helicase conserved C-terminal domain BF29_2133 PF00270 DEAD/DEAH box helicase BF29_2134 PF00245 Alkaline phosphatase BF29_2135 PF01380 SIS domain BF29_2135 PF01418 Helix-turn-helix domain, rpiR family BF29_2138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_2138 PF00512 His Kinase A (phospho-acceptor) domain BF29_2138 PF00672 HAMP domain BF29_214 PF16924 Dipicolinate synthase subunit A N-terminal domain BF29_214 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BF29_2142 PF04073 Aminoacyl-tRNA editing domain BF29_2144 PF04172 LrgB-like family BF29_2145 PF03788 LrgA family BF29_2146 PF03466 LysR substrate binding domain BF29_2146 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF29_2147 PF13537 Glutamine amidotransferase domain BF29_2147 PF00733 Asparagine synthase BF29_2149 PF13333 Integrase core domain BF29_2149 PF00665 Integrase core domain BF29_2149 PF13276 HTH-like domain BF29_215 PF02441 Flavoprotein BF29_2150 PF01527 Transposase BF29_216 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF29_216 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF29_2163 PF06738 Putative threonine/serine exporter BF29_2164 PF01063 Amino-transferase class IV BF29_2165 PF13722 5TM C-terminal transporter carbon starvation CstA BF29_2165 PF02554 Carbon starvation protein CstA BF29_2166 PF03180 NLPA lipoprotein BF29_2167 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2168 PF00005 ABC transporter BF29_2168 PF09383 NIL domain BF29_2169 PF00005 ABC transporter BF29_217 PF00696 Amino acid kinase family BF29_217 PF13840 ACT domain BF29_2172 PF01554 MatE BF29_2173 PF08437 Glycosyl transferase family 8 C-terminal BF29_2173 PF01501 Glycosyl transferase family 8 BF29_2175 PF01546 Peptidase family M20/M25/M40 BF29_2175 PF07687 Peptidase dimerisation domain BF29_2177 PF07690 Major Facilitator Superfamily BF29_2179 PF00860 Permease family BF29_218 PF00701 Dihydrodipicolinate synthetase family BF29_2180 PF00205 Thiamine pyrophosphate enzyme, central domain BF29_2180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BF29_2180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BF29_2185 PF00005 ABC transporter BF29_2185 PF17912 MalK OB fold domain BF29_2186 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2187 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2189 PF13416 Bacterial extracellular solute-binding protein BF29_219 PF00753 Metallo-beta-lactamase superfamily BF29_219 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF29_219 PF17770 Ribonuclease J C-terminal domain BF29_2190 PF03009 Glycerophosphoryl diester phosphodiesterase family BF29_2195 PF00664 ABC transporter transmembrane region BF29_2195 PF00005 ABC transporter BF29_2197 PF14489 QueF-like protein BF29_22 PF07408 Protein of unknown function (DUF1507) BF29_2200 PF00128 Alpha amylase, catalytic domain BF29_2200 PF09154 Domain of unknown function (DUF1939) BF29_2201 PF09364 XFP N-terminal domain BF29_2201 PF09363 XFP C-terminal domain BF29_2201 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase BF29_2202 PF01740 STAS domain BF29_2204 PF03435 Saccharopine dehydrogenase NADP binding domain BF29_2204 PF16653 Saccharopine dehydrogenase C-terminal domain BF29_2205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF29_2207 PF01168 Alanine racemase, N-terminal domain BF29_2208 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF29_2209 PF00005 ABC transporter BF29_221 PF00574 Clp protease BF29_2211 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2216 PF06039 Malate:quinone oxidoreductase (Mqo) BF29_2219 PF00665 Integrase core domain BF29_222 PF14035 YlzJ-like protein BF29_2220 PF01695 IstB-like ATP binding protein BF29_2221 PF01695 IstB-like ATP binding protein BF29_223 PF01580 FtsK/SpoIIIE family BF29_223 PF17854 FtsK alpha domain BF29_223 PF09397 Ftsk gamma domain BF29_2230 PF01695 IstB-like ATP binding protein BF29_2234 PF02590 Predicted SPOUT methyltransferase BF29_2235 PF13180 PDZ domain BF29_2236 PF00753 Metallo-beta-lactamase superfamily BF29_2237 PF09648 YycH protein BF29_2238 PF07435 YycH protein BF29_2239 PF00512 His Kinase A (phospho-acceptor) domain BF29_2239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_2239 PF00672 HAMP domain BF29_2239 PF13426 PAS domain BF29_2240 PF00072 Response regulator receiver domain BF29_2240 PF00486 Transcriptional regulatory protein, C terminal BF29_2244 PF00709 Adenylosuccinate synthetase BF29_2245 PF00772 DnaB-like helicase N terminal domain BF29_2245 PF03796 DnaB-like helicase C terminal domain BF29_2246 PF03948 Ribosomal protein L9, C-terminal domain BF29_2246 PF01281 Ribosomal protein L9, N-terminal domain BF29_2247 PF01368 DHH family BF29_2247 PF02272 DHHA1 domain BF29_2249 PF01084 Ribosomal protein S18 BF29_2250 PF00436 Single-strand binding protein family BF29_2251 PF01250 Ribosomal protein S6 BF29_2252 PF00885 6,7-dimethyl-8-ribityllumazine synthase BF29_2254 PF00677 Lumazine binding domain BF29_2255 PF01872 RibD C-terminal domain BF29_2255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF29_2256 PF01926 50S ribosome-binding GTPase BF29_2256 PF06071 Protein of unknown function (DUF933) BF29_2257 PF06107 Bacterial protein of unknown function (DUF951) BF29_2258 PF00924 Mechanosensitive ion channel BF29_2259 PF06866 Protein of unknown function (DUF1256) BF29_2260 PF04474 Protein of unknown function (DUF554) BF29_2261 PF02195 ParB-like nuclease domain BF29_2261 PF17762 HTH domain found in ParB protein BF29_2262 PF13614 AAA domain BF29_2264 PF17762 HTH domain found in ParB protein BF29_2264 PF02195 ParB-like nuclease domain BF29_2265 PF02527 rRNA small subunit methyltransferase G BF29_2266 PF01134 Glucose inhibited division protein A BF29_2266 PF13932 GidA associated domain BF29_2267 PF10396 GTP-binding protein TrmE N-terminus BF29_2267 PF12631 MnmE helical domain BF29_2267 PF01926 50S ribosome-binding GTPase BF29_2268 PF01424 R3H domain BF29_2268 PF14804 Jag N-terminus BF29_2269 PF02096 60Kd inner membrane protein BF29_2270 PF00825 Ribonuclease P BF29_2271 PF00308 Bacterial dnaA protein BF29_2271 PF08299 Bacterial dnaA protein helix-turn-helix BF29_2271 PF11638 DnaA N-terminal domain BF29_2272 PF02767 DNA polymerase III beta subunit, central domain BF29_2272 PF02768 DNA polymerase III beta subunit, C-terminal domain BF29_2272 PF00712 DNA polymerase III beta subunit, N-terminal domain BF29_2276 PF02463 RecF/RecN/SMC N terminal domain BF29_2277 PF04025 Domain of unknown function (DUF370) BF29_2278 PF00986 DNA gyrase B subunit, carboxyl terminus BF29_2278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_2278 PF01751 Toprim domain BF29_2278 PF00204 DNA gyrase B BF29_2279 PF03989 DNA gyrase C-terminal domain, beta-propeller BF29_2279 PF00521 DNA gyrase/topoisomerase IV, subunit A BF29_228 PF05193 Peptidase M16 inactive domain BF29_2280 PF00072 Response regulator receiver domain BF29_2288 PF10764 Inhibitor of sigma-G Gin BF29_2289 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BF29_2289 PF01276 Orn/Lys/Arg decarboxylase, major domain BF29_229 PF00675 Insulinase (Peptidase family M16) BF29_229 PF05193 Peptidase M16 inactive domain BF29_2290 PF02223 Thymidylate kinase BF29_2291 PF06153 Cyclic-di-AMP receptor BF29_2292 PF03885 Protein of unknown function (DUF327) BF29_2293 PF09115 DNA polymerase III, delta subunit, C terminal BF29_2294 PF04468 PSP1 C-terminal conserved region BF29_2295 PF06156 Initiation control protein YabA BF29_2296 PF05175 Methyltransferase small domain BF29_2297 PF01541 GIY-YIG catalytic domain BF29_2298 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF29_2299 PF18277 AbrB C-terminal domain BF29_2299 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF29_23 PF01098 Cell cycle protein BF29_2300 PF08264 Anticodon-binding domain of tRNA BF29_2300 PF09334 tRNA synthetases class I (M) BF29_2300 PF01588 Putative tRNA binding domain BF29_2301 PF01026 TatD related DNase BF29_2302 PF13331 Domain of unknown function (DUF4093) BF29_2302 PF13662 Toprim domain BF29_2303 PF00398 Ribosomal RNA adenine dimethylase BF29_2304 PF05582 YabG peptidase U57 BF29_2305 PF06257 Biofilm formation stimulator VEG BF29_2306 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF29_2307 PF08544 GHMP kinases C terminal BF29_2307 PF00288 GHMP kinases N terminal domain BF29_2308 PF00156 Phosphoribosyl transferase domain BF29_2308 PF09182 Bacterial purine repressor, N-terminal BF29_2309 PF01042 Endoribonuclease L-PSP BF29_231 PF11588 Protein of unknown function (DUF3243) BF29_2310 PF04026 SpoVG BF29_2312 PF00483 Nucleotidyl transferase BF29_2312 PF00132 Bacterial transferase hexapeptide (six repeats) BF29_2313 PF14572 Phosphoribosyl synthetase-associated domain BF29_2313 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BF29_2314 PF01386 Ribosomal L25p family BF29_2314 PF14693 Ribosomal protein TL5, C-terminal domain BF29_2315 PF01195 Peptidyl-tRNA hydrolase BF29_2316 PF10955 Protein of unknown function (DUF2757) BF29_2317 PF02559 CarD-like/TRCF domain BF29_2317 PF00270 DEAD/DEAH box helicase BF29_2317 PF00271 Helicase conserved C-terminal domain BF29_2317 PF03461 TRCF domain BF29_2317 PF17757 UvrB interaction domain BF29_2318 PF15714 Stage V sporulation protein T C-terminal, transcription factor BF29_2318 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BF29_2319 PF01943 Polysaccharide biosynthesis protein BF29_2319 PF14667 Polysaccharide biosynthesis C-terminal domain BF29_232 PF11868 Protein of unknown function (DUF3388) BF29_2320 PF03819 MazG nucleotide pyrophosphohydrolase domain BF29_2320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF29_2321 PF01479 S4 domain BF29_2322 PF07873 YabP family BF29_2323 PF09578 Spore cortex protein YabQ (Spore_YabQ) BF29_2325 PF00575 S1 RNA binding domain BF29_2327 PF07228 Stage II sporulation protein E (SpoIIE) BF29_2328 PF00092 von Willebrand factor type A domain BF29_2329 PF00069 Protein kinase domain BF29_233 PF13464 Domain of unknown function (DUF4115) BF29_2330 PF09179 TilS substrate binding domain BF29_2330 PF01171 PP-loop family BF29_2330 PF11734 TilS substrate C-terminal domain BF29_2332 PF01434 Peptidase family M41 BF29_2332 PF06480 FtsH Extracellular BF29_2332 PF17862 AAA+ lid domain BF29_2332 PF00004 ATPase family associated with various cellular activities (AAA) BF29_2333 PF03309 Type III pantothenate kinase BF29_2334 PF01430 Hsp33 protein BF29_2335 PF00291 Pyridoxal-phosphate dependent enzyme BF29_2336 PF00809 Pterin binding enzyme BF29_2337 PF02152 Dihydroneopterin aldolase BF29_2338 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BF29_234 PF01066 CDP-alcohol phosphatidyltransferase BF29_2341 PF01336 OB-fold nucleic acid binding domain BF29_2341 PF00152 tRNA synthetases class II (D, K and N) BF29_235 PF18146 Damage-inducible protein CinA KH domain BF29_235 PF00994 Probable molybdopterin binding domain BF29_235 PF02464 Competence-damaged protein BF29_2359 PF14175 YaaC-like Protein BF29_236 PF00154 recA bacterial DNA recombination protein BF29_2360 PF00478 IMP dehydrogenase / GMP reductase domain BF29_2360 PF00571 CBS domain BF29_2361 PF00768 D-alanyl-D-alanine carboxypeptidase BF29_2361 PF07943 Penicillin-binding protein 5, C-terminal domain BF29_2362 PF01680 SOR/SNZ family BF29_2363 PF01174 SNO glutamine amidotransferase family BF29_2364 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF29_2364 PF02403 Seryl-tRNA synthetase N-terminal domain BF29_2367 PF01712 Deoxynucleoside kinase BF29_2368 PF01712 Deoxynucleoside kinase BF29_2369 PF01476 LysM domain BF29_2369 PF00704 Glycosyl hydrolases family 18 BF29_237 PF00013 KH domain BF29_237 PF01966 HD domain BF29_237 PF12072 Domain of unknown function (DUF3552) BF29_2371 PF14437 MafB19-like deaminase BF29_2372 PF12169 DNA polymerase III subunits gamma and tau domain III BF29_2374 PF13662 Toprim domain BF29_2374 PF02132 RecR protein BF29_238 PF13277 YmdB-like protein BF29_2384 PF17727 CtsR C-terminal dimerization domain BF29_2384 PF05848 CtsR N-terminal HTH domain BF29_2385 PF02151 UvrB/uvrC motif BF29_2386 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BF29_2387 PF17871 AAA lid domain BF29_2387 PF00004 ATPase family associated with various cellular activities (AAA) BF29_2387 PF02861 Clp amino terminal domain, pathogenicity island component BF29_2387 PF10431 C-terminal, D2-small domain, of ClpB protein BF29_2387 PF07724 AAA domain (Cdc48 subfamily) BF29_2388 PF18073 Rubredoxin metal binding domain BF29_239 PF04232 Stage V sporulation protein S (SpoVS) BF29_2390 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BF29_2391 PF02542 YgbB family BF29_2392 PF00749 tRNA synthetases class I (E and Q), catalytic domain BF29_2393 PF00132 Bacterial transferase hexapeptide (six repeats) BF29_2393 PF06426 Serine acetyltransferase, N-terminal BF29_2394 PF09190 DALR domain BF29_2394 PF01406 tRNA synthetases class I (C) catalytic domain BF29_2395 PF00636 Ribonuclease III domain BF29_2396 PF08032 RNA 2'-O ribose methyltransferase substrate binding BF29_2396 PF00588 SpoU rRNA Methylase family BF29_2397 PF05991 YacP-like NYN domain BF29_2399 PF08281 Sigma-70, region 4 BF29_2399 PF04542 Sigma-70 region 2 BF29_24 PF02628 Cytochrome oxidase assembly protein BF29_2400 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BF29_2401 PF00467 KOW motif BF29_2401 PF02357 Transcription termination factor nusG BF29_2402 PF00298 Ribosomal protein L11, RNA binding domain BF29_2402 PF03946 Ribosomal protein L11, N-terminal domain BF29_2404 PF00687 Ribosomal protein L1p/L10e family BF29_2405 PF00466 Ribosomal protein L10 BF29_2406 PF16320 Ribosomal protein L7/L12 dimerisation domain BF29_2406 PF00542 Ribosomal protein L7/L12 C-terminal domain BF29_2407 PF05175 Methyltransferase small domain BF29_2408 PF04563 RNA polymerase beta subunit BF29_2408 PF04560 RNA polymerase Rpb2, domain 7 BF29_2408 PF04565 RNA polymerase Rpb2, domain 3 BF29_2408 PF04561 RNA polymerase Rpb2, domain 2 BF29_2408 PF00562 RNA polymerase Rpb2, domain 6 BF29_2408 PF10385 RNA polymerase beta subunit external 1 domain BF29_2409 PF00623 RNA polymerase Rpb1, domain 2 BF29_2409 PF04997 RNA polymerase Rpb1, domain 1 BF29_2409 PF04998 RNA polymerase Rpb1, domain 5 BF29_2409 PF05000 RNA polymerase Rpb1, domain 4 BF29_2409 PF04983 RNA polymerase Rpb1, domain 3 BF29_2410 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BF29_2411 PF00164 Ribosomal protein S12/S23 BF29_2412 PF00177 Ribosomal protein S7p/S5e BF29_2413 PF00679 Elongation factor G C-terminus BF29_2413 PF03144 Elongation factor Tu domain 2 BF29_2413 PF14492 Elongation Factor G, domain II BF29_2413 PF03764 Elongation factor G, domain IV BF29_2413 PF00009 Elongation factor Tu GTP binding domain BF29_2414 PF00009 Elongation factor Tu GTP binding domain BF29_2414 PF03143 Elongation factor Tu C-terminal domain BF29_2414 PF03144 Elongation factor Tu domain 2 BF29_2415 PF00338 Ribosomal protein S10p/S20e BF29_2416 PF00297 Ribosomal protein L3 BF29_2417 PF00573 Ribosomal protein L4/L1 family BF29_2418 PF00276 Ribosomal protein L23 BF29_2419 PF00181 Ribosomal Proteins L2, RNA binding domain BF29_2419 PF03947 Ribosomal Proteins L2, C-terminal domain BF29_242 PF00324 Amino acid permease BF29_2420 PF00203 Ribosomal protein S19 BF29_2421 PF00237 Ribosomal protein L22p/L17e BF29_2422 PF00189 Ribosomal protein S3, C-terminal domain BF29_2422 PF07650 KH domain BF29_2423 PF00252 Ribosomal protein L16p/L10e BF29_2424 PF00831 Ribosomal L29 protein BF29_2425 PF00366 Ribosomal protein S17 BF29_2426 PF00238 Ribosomal protein L14p/L23e BF29_2427 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BF29_2427 PF00467 KOW motif BF29_2428 PF00673 ribosomal L5P family C-terminus BF29_2428 PF00281 Ribosomal protein L5 BF29_2429 PF00253 Ribosomal protein S14p/S29e BF29_243 PF00919 Uncharacterized protein family UPF0004 BF29_243 PF04055 Radical SAM superfamily BF29_243 PF01938 TRAM domain BF29_2430 PF00410 Ribosomal protein S8 BF29_2431 PF00347 Ribosomal protein L6 BF29_2432 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BF29_2433 PF03719 Ribosomal protein S5, C-terminal domain BF29_2433 PF00333 Ribosomal protein S5, N-terminal domain BF29_2434 PF00327 Ribosomal protein L30p/L7e BF29_2435 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BF29_2436 PF00344 SecY translocase BF29_2437 PF05191 Adenylate kinase, active site lid BF29_2438 PF01176 Translation initiation factor 1A / IF-1 BF29_2439 PF00416 Ribosomal protein S13/S18 BF29_244 PF06133 Control of competence regulator ComK, YlbF/YmcA BF29_2440 PF00411 Ribosomal protein S11 BF29_2441 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BF29_2441 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BF29_2441 PF01000 RNA polymerase Rpb3/RpoA insert domain BF29_2442 PF01196 Ribosomal protein L17 BF29_2443 PF00005 ABC transporter BF29_2444 PF00005 ABC transporter BF29_2445 PF02361 Cobalt transport protein BF29_2446 PF01416 tRNA pseudouridine synthase BF29_2447 PF00572 Ribosomal protein L13 BF29_2448 PF00380 Ribosomal protein S9/S16 BF29_245 PF10628 Outer spore coat protein E (CotE) BF29_2451 PF14306 PUA-like domain BF29_2451 PF01747 ATP-sulfurylase BF29_2453 PF00324 Amino acid permease BF29_2455 PF01520 N-acetylmuramoyl-L-alanine amidase BF29_2456 PF10609 NUBPL iron-transfer P-loop NTPase BF29_2458 PF17898 Spore germination GerD central core domain BF29_2459 PF14089 KinB-signalling pathway activation in sporulation BF29_246 PF00488 MutS domain V BF29_246 PF05190 MutS family domain IV BF29_246 PF05192 MutS domain III BF29_246 PF01624 MutS domain I BF29_246 PF05188 MutS domain II BF29_2461 PF12833 Helix-turn-helix domain BF29_2462 PF07883 Cupin domain BF29_2463 PF02796 Helix-turn-helix domain of resolvase BF29_2463 PF00665 Integrase core domain BF29_2465 PF01695 IstB-like ATP binding protein BF29_2467 PF01522 Polysaccharide deacetylase BF29_2469 PF01654 Cytochrome bd terminal oxidase subunit I BF29_247 PF08676 MutL C terminal dimerisation domain BF29_247 PF01119 DNA mismatch repair protein, C-terminal domain BF29_2470 PF02322 Cytochrome bd terminal oxidase subunit II BF29_2471 PF00664 ABC transporter transmembrane region BF29_2471 PF00005 ABC transporter BF29_2472 PF00005 ABC transporter BF29_2472 PF00664 ABC transporter transmembrane region BF29_248 PF05901 Excalibur calcium-binding domain BF29_2487 PF00589 Phage integrase family BF29_2487 PF14659 Phage integrase, N-terminal SAM-like domain BF29_2488 PF05901 Excalibur calcium-binding domain BF29_2488 PF00565 Staphylococcal nuclease homologue BF29_2493 PF02498 BRO family, N-terminal domain BF29_2493 PF10548 P22AR C-terminal domain BF29_25 PF01040 UbiA prenyltransferase family BF29_2501 PF09588 YqaJ-like viral recombinase domain BF29_2502 PF03837 RecT family BF29_2522 PF01507 Phosphoadenosine phosphosulfate reductase family BF29_2523 PF01527 Transposase BF29_2524 PF00665 Integrase core domain BF29_2524 PF13333 Integrase core domain BF29_2524 PF13276 HTH-like domain BF29_2527 PF10668 Phage terminase small subunit BF29_253 PF17209 Hfq protein BF29_254 PF00004 ATPase family associated with various cellular activities (AAA) BF29_254 PF17866 AAA lid domain BF29_2548 PF13392 HNH endonuclease BF29_255 PF01926 50S ribosome-binding GTPase BF29_255 PF13167 GTP-binding GTPase N-terminal BF29_255 PF16360 GTP-binding GTPase Middle Region BF29_2555 PF04688 SPP1 phage holin BF29_2556 PF01476 LysM domain BF29_2556 PF05257 CHAP domain BF29_256 PF06838 Methionine gamma-lyase BF29_2562 PF00753 Metallo-beta-lactamase superfamily BF29_2562 PF03772 Competence protein BF29_2562 PF13567 Domain of unknown function (DUF4131) BF29_2563 PF14659 Phage integrase, N-terminal SAM-like domain BF29_2563 PF00589 Phage integrase family BF29_2564 PF00565 Staphylococcal nuclease homologue BF29_2564 PF05901 Excalibur calcium-binding domain BF29_2569 PF10548 P22AR C-terminal domain BF29_2569 PF02498 BRO family, N-terminal domain BF29_257 PF01367 5'-3' exonuclease, C-terminal SAM fold BF29_257 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BF29_2577 PF09588 YqaJ-like viral recombinase domain BF29_2578 PF03837 RecT family BF29_2599 PF01507 Phosphoadenosine phosphosulfate reductase family BF29_26 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BF29_26 PF00034 Cytochrome c BF29_26 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF29_260 PF00313 'Cold-shock' DNA-binding domain BF29_2600 PF01527 Transposase BF29_2601 PF13276 HTH-like domain BF29_2601 PF00665 Integrase core domain BF29_2601 PF13333 Integrase core domain BF29_2604 PF10668 Phage terminase small subunit BF29_261 PF01325 Iron dependent repressor, N-terminal DNA binding domain BF29_261 PF02742 Iron dependent repressor, metal binding and dimerisation domain BF29_262 PF01268 Formate--tetrahydrofolate ligase BF29_2624 PF13392 HNH endonuclease BF29_2631 PF04688 SPP1 phage holin BF29_2632 PF01476 LysM domain BF29_2632 PF05257 CHAP domain BF29_2638 PF13567 Domain of unknown function (DUF4131) BF29_2638 PF00753 Metallo-beta-lactamase superfamily BF29_2638 PF03772 Competence protein BF29_2639 PF00491 Arginase family BF29_264 PF12848 ABC transporter BF29_264 PF16326 ABC transporter C-terminal domain BF29_264 PF00005 ABC transporter BF29_2641 PF04542 Sigma-70 region 2 BF29_2641 PF08281 Sigma-70, region 4 BF29_2643 PF08281 Sigma-70, region 4 BF29_2643 PF04542 Sigma-70 region 2 BF29_2644 PF13490 Putative zinc-finger BF29_2645 PF13276 HTH-like domain BF29_2645 PF00665 Integrase core domain BF29_2645 PF13333 Integrase core domain BF29_2646 PF01527 Transposase BF29_2648 PF02457 DisA bacterial checkpoint controller nucleotide-binding BF29_2649 PF07949 YbbR-like protein BF29_265 PF13769 Virulence factor BF29_265 PF08712 Scaffold protein Nfu/NifU N terminal BF29_2650 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF29_2650 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF29_2650 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF29_2650 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF29_2652 PF01380 SIS domain BF29_2654 PF11514 Protein of unknown function (DUF3219) BF29_2655 PF00296 Luciferase-like monooxygenase BF29_266 PF06491 Disulphide isomerase BF29_2664 PF00368 Hydroxymethylglutaryl-coenzyme A reductase BF29_2665 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal BF29_2665 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal BF29_2666 PF00108 Thiolase, N-terminal domain BF29_2666 PF02803 Thiolase, C-terminal domain BF29_2669 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF29_2669 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF29_267 PF14005 YpjP-like protein BF29_2670 PF00571 CBS domain BF29_2670 PF00005 ABC transporter BF29_2671 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2672 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF29_2673 PF02378 Phosphotransferase system, EIIC BF29_2673 PF00367 phosphotransferase system, EIIB BF29_2674 PF00128 Alpha amylase, catalytic domain BF29_2674 PF16657 Maltogenic Amylase, C-terminal domain BF29_2675 PF07702 UTRA domain BF29_2675 PF00392 Bacterial regulatory proteins, gntR family BF29_2676 PF02447 GntP family permease BF29_2677 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF29_2677 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF29_2678 PF00392 Bacterial regulatory proteins, gntR family BF29_2678 PF07729 FCD domain BF29_2679 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF29_2679 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF29_2680 PF00258 Flavodoxin BF29_2681 PF08459 UvrC Helix-hairpin-helix N-terminal BF29_2681 PF02151 UvrB/uvrC motif BF29_2681 PF01541 GIY-YIG catalytic domain BF29_2682 PF13545 Crp-like helix-turn-helix domain BF29_2682 PF00027 Cyclic nucleotide-binding domain BF29_2683 PF00403 Heavy-metal-associated domain BF29_2684 PF00403 Heavy-metal-associated domain BF29_2687 PF03477 ATP cone domain BF29_2687 PF02867 Ribonucleotide reductase, barrel domain BF29_2687 PF00317 Ribonucleotide reductase, all-alpha domain BF29_2689 PF00268 Ribonucleotide reductase, small chain BF29_269 PF00186 Dihydrofolate reductase BF29_2690 PF02660 Glycerol-3-phosphate acyltransferase BF29_2694 PF00893 Small Multidrug Resistance protein BF29_2695 PF00893 Small Multidrug Resistance protein BF29_2697 PF01032 FecCD transport family BF29_2698 PF01032 FecCD transport family BF29_2699 PF01497 Periplasmic binding protein BF29_27 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF29_270 PF03006 Haemolysin-III related BF29_2700 PF00005 ABC transporter BF29_2701 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_2704 PF01709 Transcriptional regulator BF29_2705 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BF29_2705 PF01740 STAS domain BF29_2706 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BF29_2706 PF02770 Acyl-CoA dehydrogenase, middle domain BF29_2706 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF29_271 PF13472 GDSL-like Lipase/Acylhydrolase family BF29_2711 PF00440 Bacterial regulatory proteins, tetR family BF29_2726 PF00440 Bacterial regulatory proteins, tetR family BF29_2726 PF13977 BetI-type transcriptional repressor, C-terminal BF29_2728 PF12323 Helix-turn-helix domain BF29_2728 PF07282 Putative transposase DNA-binding domain BF29_2728 PF01385 Probable transposase BF29_2729 PF00171 Aldehyde dehydrogenase family BF29_273 PF01189 16S rRNA methyltransferase RsmB/F BF29_273 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BF29_273 PF17126 RsmF rRNA methyltransferase first C-terminal domain BF29_2733 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain BF29_2733 PF12708 Pectate lyase superfamily protein BF29_2735 PF01507 Phosphoadenosine phosphosulfate reductase family BF29_2736 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BF29_2737 PF01903 CbiX BF29_2738 PF14824 Sirohaem biosynthesis protein central BF29_2739 PF04073 Aminoacyl-tRNA editing domain BF29_274 PF01625 Peptide methionine sulfoxide reductase BF29_2740 PF00465 Iron-containing alcohol dehydrogenase BF29_2743 PF13193 AMP-binding enzyme C-terminal domain BF29_2743 PF00501 AMP-binding enzyme BF29_2746 PF00892 EamA-like transporter family BF29_2749 PF01545 Cation efflux family BF29_2749 PF16916 Dimerisation domain of Zinc Transporter BF29_275 PF01641 SelR domain BF29_2751 PF01380 SIS domain BF29_2752 PF00535 Glycosyl transferase family 2 BF29_2752 PF01501 Glycosyl transferase family 8 BF29_2753 PF00288 GHMP kinases N terminal domain BF29_2753 PF08544 GHMP kinases C terminal BF29_2753 PF10509 Galactokinase galactose-binding signature BF29_2755 PF00288 GHMP kinases N terminal domain BF29_2755 PF08544 GHMP kinases C terminal BF29_2756 PF13460 NAD(P)H-binding BF29_2758 PF07282 Putative transposase DNA-binding domain BF29_2758 PF01385 Probable transposase BF29_2758 PF12323 Helix-turn-helix domain BF29_2759 PF00155 Aminotransferase class I and II BF29_2760 PF02627 Carboxymuconolactone decarboxylase family BF29_2763 PF05167 Uncharacterised ACR (DUF711) BF29_2767 PF00356 Bacterial regulatory proteins, lacI family BF29_2768 PF01380 SIS domain BF29_2769 PF07875 Coat F domain BF29_277 PF02743 Cache domain BF29_277 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF29_277 PF00672 HAMP domain BF29_2770 PF00248 Aldo/keto reductase family BF29_2772 PF00324 Amino acid permease BF29_2776 PF00854 POT family BF29_2777 PF00324 Amino acid permease BF29_278 PF06855 YozE SAM-like fold BF29_2780 PF00005 ABC transporter BF29_2780 PF08402 TOBE domain BF29_2781 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2782 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2783 PF13416 Bacterial extracellular solute-binding protein BF29_2785 PF13520 Amino acid permease BF29_2786 PF02589 LUD domain BF29_2787 PF11870 Domain of unknown function (DUF3390) BF29_2787 PF13183 4Fe-4S dicluster domain BF29_2787 PF02589 LUD domain BF29_2788 PF02754 Cysteine-rich domain BF29_2789 PF13520 Amino acid permease BF29_2790 PF00465 Iron-containing alcohol dehydrogenase BF29_2791 PF00909 Ammonium Transporter Family BF29_2792 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF29_2792 PF17203 Single cache domain 3 BF29_2792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_2792 PF00989 PAS fold BF29_2793 PF00072 Response regulator receiver domain BF29_2793 PF08279 HTH domain BF29_2793 PF12431 Transcriptional regulator BF29_2794 PF03600 Citrate transporter BF29_2795 PF00535 Glycosyl transferase family 2 BF29_2796 PF13538 UvrD-like helicase C-terminal domain BF29_2799 PF12323 Helix-turn-helix domain BF29_2799 PF01385 Probable transposase BF29_2799 PF07282 Putative transposase DNA-binding domain BF29_28 PF00510 Cytochrome c oxidase subunit III BF29_280 PF14162 YozD-like protein BF29_2804 PF04309 Glycerol-3-phosphate responsive antiterminator BF29_2805 PF00230 Major intrinsic protein BF29_2806 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF29_2806 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF29_2807 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BF29_2807 PF01266 FAD dependent oxidoreductase BF29_2808 PF00375 Sodium:dicarboxylate symporter family BF29_2809 PF00027 Cyclic nucleotide-binding domain BF29_2809 PF13545 Crp-like helix-turn-helix domain BF29_281 PF02557 D-alanyl-D-alanine carboxypeptidase BF29_2810 PF01527 Transposase BF29_2811 PF13333 Integrase core domain BF29_2811 PF00665 Integrase core domain BF29_2811 PF13276 HTH-like domain BF29_2813 PF01814 Hemerythrin HHE cation binding domain BF29_2813 PF04405 Domain of Unknown function (DUF542) BF29_2814 PF04264 YceI-like domain BF29_2815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BF29_2818 PF01966 HD domain BF29_2818 PF11871 Domain of unknown function (DUF3391) BF29_2819 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BF29_2819 PF03129 Anticodon binding domain BF29_282 PF17820 PDZ domain BF29_282 PF03572 Peptidase family S41 BF29_282 PF01471 Putative peptidoglycan binding domain BF29_2821 PF13520 Amino acid permease BF29_2822 PF02673 Bacitracin resistance protein BacA BF29_2823 PF02416 mttA/Hcf106 family BF29_2824 PF01594 AI-2E family transporter BF29_2825 PF00005 ABC transporter BF29_2827 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF29_2828 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2829 PF00528 Binding-protein-dependent transport system inner membrane component BF29_283 PF01047 MarR family BF29_2832 PF01638 HxlR-like helix-turn-helix BF29_2833 PF09335 SNARE associated Golgi protein BF29_2834 PF09335 SNARE associated Golgi protein BF29_2835 PF03816 Cell envelope-related transcriptional attenuator domain BF29_2838 PF02574 Homocysteine S-methyltransferase BF29_2838 PF02219 Methylenetetrahydrofolate reductase BF29_2839 PF02310 B12 binding domain BF29_2839 PF02574 Homocysteine S-methyltransferase BF29_2839 PF00809 Pterin binding enzyme BF29_2839 PF02965 Vitamin B12 dependent methionine synthase, activation domain BF29_2839 PF02607 B12 binding domain BF29_2846 PF02706 Chain length determinant protein BF29_2846 PF13807 G-rich domain on putative tyrosine kinase BF29_2847 PF13614 AAA domain BF29_2849 PF00483 Nucleotidyl transferase BF29_285 PF00188 Cysteine-rich secretory protein family BF29_2850 PF02397 Bacterial sugar transferase BF29_2851 PF00534 Glycosyl transferases group 1 BF29_2851 PF13439 Glycosyltransferase Family 4 BF29_2853 PF01501 Glycosyl transferase family 8 BF29_2853 PF00535 Glycosyl transferase family 2 BF29_2854 PF01501 Glycosyl transferase family 8 BF29_2854 PF00535 Glycosyl transferase family 2 BF29_286 PF01554 MatE BF29_2864 PF10460 Peptidase M30 BF29_2870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BF29_2870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BF29_2872 PF13823 Alcohol dehydrogenase GroES-associated BF29_2872 PF08240 Alcohol dehydrogenase GroES-like domain BF29_2872 PF00107 Zinc-binding dehydrogenase BF29_2873 PF02525 Flavodoxin-like fold BF29_2876 PF05036 Sporulation related domain BF29_2876 PF08239 Bacterial SH3 domain BF29_2876 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BF29_2879 PF10026 Predicted Zn-dependent protease (DUF2268) BF29_288 PF01678 Diaminopimelate epimerase BF29_2881 PF12323 Helix-turn-helix domain BF29_2881 PF01385 Probable transposase BF29_2881 PF07282 Putative transposase DNA-binding domain BF29_2884 PF01473 Putative cell wall binding repeat BF29_2884 PF02324 Glycosyl hydrolase family 70 BF29_2888 PF03060 Nitronate monooxygenase BF29_289 PF01068 ATP dependent DNA ligase domain BF29_2890 PF04237 YjbR BF29_2892 PF03772 Competence protein BF29_2892 PF13567 Domain of unknown function (DUF4131) BF29_2892 PF00753 Metallo-beta-lactamase superfamily BF29_2895 PF09704 CRISPR-associated protein (Cas_Cas5) BF29_29 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BF29_290 PF02735 Ku70/Ku80 beta-barrel domain BF29_2904 PF13520 Amino acid permease BF29_2906 PF03816 Cell envelope-related transcriptional attenuator domain BF29_2909 PF00248 Aldo/keto reductase family BF29_291 PF01569 PAP2 superfamily BF29_2912 PF02515 CoA-transferase family III BF29_2913 PF00107 Zinc-binding dehydrogenase BF29_2913 PF16884 N-terminal domain of oxidoreductase BF29_2915 PF07282 Putative transposase DNA-binding domain BF29_2915 PF12323 Helix-turn-helix domain BF29_2915 PF01385 Probable transposase BF29_2919 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BF29_2922 PF00083 Sugar (and other) transporter BF29_2929 PF07690 Major Facilitator Superfamily BF29_293 PF00884 Sulfatase BF29_2930 PF00356 Bacterial regulatory proteins, lacI family BF29_2932 PF02449 Beta-galactosidase BF29_2932 PF08533 Beta-galactosidase C-terminal domain BF29_2932 PF08532 Beta-galactosidase trimerisation domain BF29_2934 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2935 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BF29_2936 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2937 PF00005 ABC transporter BF29_2937 PF00571 CBS domain BF29_2938 PF12802 MarR family BF29_2939 PF12464 Maltose acetyltransferase BF29_2939 PF14602 Hexapeptide repeat of succinyl-transferase BF29_294 PF03190 Protein of unknown function, DUF255 BF29_2945 PF16123 Hydroxyacylglutathione hydrolase C-terminus BF29_2945 PF00753 Metallo-beta-lactamase superfamily BF29_2946 PF00135 Carboxylesterase family BF29_2947 PF01078 Magnesium chelatase, subunit ChlI BF29_2947 PF13335 Magnesium chelatase, subunit ChlI C-terminal BF29_295 PF07690 Major Facilitator Superfamily BF29_2950 PF00465 Iron-containing alcohol dehydrogenase BF29_2951 PF02445 Quinolinate synthetase A protein BF29_2952 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BF29_2952 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BF29_2953 PF02910 Fumarate reductase flavoprotein C-term BF29_2953 PF00890 FAD binding domain BF29_2954 PF00266 Aminotransferase class-V BF29_2958 PF00005 ABC transporter BF29_2964 PF12558 ATP-binding cassette cobalt transporter BF29_2964 PF00005 ABC transporter BF29_2965 PF07155 ECF-type riboflavin transporter, S component BF29_297 PF00072 Response regulator receiver domain BF29_297 PF00486 Transcriptional regulatory protein, C terminal BF29_2971 PF03009 Glycerophosphoryl diester phosphodiesterase family BF29_2973 PF00005 ABC transporter BF29_2974 PF00528 Binding-protein-dependent transport system inner membrane component BF29_298 PF18719 ArlS sensor domain BF29_298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_298 PF00512 His Kinase A (phospho-acceptor) domain BF29_2980 PF00528 Binding-protein-dependent transport system inner membrane component BF29_2981 PF00497 Bacterial extracellular solute-binding proteins, family 3 BF29_2982 PF02872 5'-nucleotidase, C-terminal domain BF29_2982 PF00149 Calcineurin-like phosphoesterase BF29_2983 PF05343 M42 glutamyl aminopeptidase BF29_2987 PF02652 L-lactate permease BF29_2988 PF00392 Bacterial regulatory proteins, gntR family BF29_2988 PF07729 FCD domain BF29_2989 PF00392 Bacterial regulatory proteins, gntR family BF29_2989 PF00155 Aminotransferase class I and II BF29_2992 PF03816 Cell envelope-related transcriptional attenuator domain BF29_2998 PF10460 Peptidase M30 BF29_2999 PF10710 Protein of unknown function (DUF2512) BF29_30 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BF29_3000 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BF29_3001 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF29_3004 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BF29_3004 PF02378 Phosphotransferase system, EIIC BF29_3005 PF00232 Glycosyl hydrolase family 1 BF29_3007 PF05043 Mga helix-turn-helix domain BF29_3007 PF00874 PRD domain BF29_3007 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BF29_3007 PF08279 HTH domain BF29_3008 PF00793 DAHP synthetase I family BF29_3009 PF01380 SIS domain BF29_3009 PF00571 CBS domain BF29_301 PF00676 Dehydrogenase E1 component BF29_301 PF16870 2-oxoglutarate dehydrogenase C-terminal BF29_301 PF16078 2-oxoglutarate dehydrogenase N-terminus BF29_301 PF02779 Transketolase, pyrimidine binding domain BF29_3010 PF01053 Cys/Met metabolism PLP-dependent enzyme BF29_3011 PF01053 Cys/Met metabolism PLP-dependent enzyme BF29_3012 PF03636 Glycosyl hydrolase family 65, N-terminal domain BF29_3012 PF03632 Glycosyl hydrolase family 65 central catalytic domain BF29_3012 PF03633 Glycosyl hydrolase family 65, C-terminal domain BF29_3013 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3014 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3015 PF01547 Bacterial extracellular solute-binding protein BF29_3016 PF12833 Helix-turn-helix domain BF29_3016 PF17853 GGDEF-like domain BF29_3017 PF03808 Glycosyl transferase WecB/TagA/CpsF family BF29_3019 PF00107 Zinc-binding dehydrogenase BF29_3019 PF08240 Alcohol dehydrogenase GroES-like domain BF29_302 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF29_302 PF00364 Biotin-requiring enzyme BF29_302 PF02817 e3 binding domain BF29_3020 PF16916 Dimerisation domain of Zinc Transporter BF29_3020 PF01545 Cation efflux family BF29_3021 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BF29_3021 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BF29_3021 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BF29_3021 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BF29_3024 PF08239 Bacterial SH3 domain BF29_3024 PF00005 ABC transporter BF29_3026 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BF29_3027 PF00510 Cytochrome c oxidase subunit III BF29_3028 PF00115 Cytochrome C and Quinol oxidase polypeptide I BF29_3029 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BF29_303 PF00171 Aldehyde dehydrogenase family BF29_3030 PF13419 Haloacid dehalogenase-like hydrolase BF29_3031 PF03816 Cell envelope-related transcriptional attenuator domain BF29_3032 PF13419 Haloacid dehalogenase-like hydrolase BF29_3033 PF03636 Glycosyl hydrolase family 65, N-terminal domain BF29_3033 PF03633 Glycosyl hydrolase family 65, C-terminal domain BF29_3033 PF03632 Glycosyl hydrolase family 65 central catalytic domain BF29_3035 PF00356 Bacterial regulatory proteins, lacI family BF29_3036 PF00311 Phosphoenolpyruvate carboxylase BF29_3038 PF00056 lactate/malate dehydrogenase, NAD binding domain BF29_3038 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF29_3039 PF01476 LysM domain BF29_3039 PF06725 3D domain BF29_3040 PF13291 ACT domain BF29_3040 PF04607 Region found in RelA / SpoT proteins BF29_3040 PF02824 TGS domain BF29_3041 PF01061 ABC-2 type transporter BF29_3043 PF01910 Thiamine-binding protein BF29_3044 PF10282 Lactonase, 7-bladed beta-propeller BF29_3046 PF00874 PRD domain BF29_3046 PF00158 Sigma-54 interaction domain BF29_3046 PF03610 PTS system fructose IIA component BF29_3047 PF03830 PTS system sorbose subfamily IIB component BF29_3047 PF03610 PTS system fructose IIA component BF29_3048 PF03610 PTS system fructose IIA component BF29_3048 PF03830 PTS system sorbose subfamily IIB component BF29_3049 PF03609 PTS system sorbose-specific iic component BF29_305 PF02096 60Kd inner membrane protein BF29_3050 PF03613 PTS system mannose/fructose/sorbose family IID component BF29_3052 PF00285 Citrate synthase, C-terminal domain BF29_3053 PF03972 MmgE/PrpD family BF29_3056 PF01425 Amidase BF29_3057 PF01910 Thiamine-binding protein BF29_3058 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3059 PF09084 NMT1/THI5 like BF29_3060 PF00005 ABC transporter BF29_3061 PF00288 GHMP kinases N terminal domain BF29_3061 PF08544 GHMP kinases C terminal BF29_3062 PF00291 Pyridoxal-phosphate dependent enzyme BF29_3063 PF03447 Homoserine dehydrogenase, NAD binding domain BF29_3063 PF00742 Homoserine dehydrogenase BF29_3063 PF01842 ACT domain BF29_3064 PF00491 Arginase family BF29_3066 PF01256 Carbohydrate kinase BF29_3067 PF00483 Nucleotidyl transferase BF29_3069 PF00474 Sodium:solute symporter family BF29_307 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF29_307 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF29_3073 PF00465 Iron-containing alcohol dehydrogenase BF29_3073 PF00171 Aldehyde dehydrogenase family BF29_3074 PF00271 Helicase conserved C-terminal domain BF29_3074 PF00270 DEAD/DEAH box helicase BF29_3076 PF01476 LysM domain BF29_3076 PF00877 NlpC/P60 family BF29_3077 PF00557 Metallopeptidase family M24 BF29_3078 PF02632 BioY family BF29_308 PF01751 Toprim domain BF29_308 PF01131 DNA topoisomerase BF29_3083 PF04239 Protein of unknown function (DUF421) BF29_3085 PF07451 Stage V sporulation protein AD (SpoVAD) BF29_3088 PF02522 Aminoglycoside 3-N-acetyltransferase BF29_3089 PF01943 Polysaccharide biosynthesis protein BF29_3090 PF00582 Universal stress protein family BF29_3093 PF08756 YfkB-like domain BF29_3093 PF04055 Radical SAM superfamily BF29_3094 PF01380 SIS domain BF29_3097 PF12146 Serine aminopeptidase, S33 BF29_31 PF08868 YugN-like family BF29_310 PF02586 SOS response associated peptidase (SRAP) BF29_3100 PF03358 NADPH-dependent FMN reductase BF29_3103 PF00149 Calcineurin-like phosphoesterase BF29_3104 PF13514 AAA domain BF29_3106 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BF29_3106 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BF29_3107 PF01554 MatE BF29_311 PF09515 Thiamine transporter protein (Thia_YuaJ) BF29_3110 PF13171 Protein of unknown function (DUF4004) BF29_3111 PF00155 Aminotransferase class I and II BF29_3112 PF03737 Aldolase/RraA BF29_3113 PF16874 Glycosyl hydrolase family 36 C-terminal domain BF29_3113 PF16875 Glycosyl hydrolase family 36 N-terminal domain BF29_3114 PF00550 Phosphopantetheine attachment site BF29_3115 PF02475 Met-10+ like-protein BF29_3115 PF05958 tRNA (Uracil-5-)-methyltransferase BF29_3115 PF01938 TRAM domain BF29_312 PF00753 Metallo-beta-lactamase superfamily BF29_3120 PF01022 Bacterial regulatory protein, arsR family BF29_3121 PF06953 Arsenical resistance operon trans-acting repressor ArsD BF29_3122 PF02374 Anion-transporting ATPase BF29_3124 PF01758 Sodium Bile acid symporter family BF29_3126 PF01209 ubiE/COQ5 methyltransferase family BF29_3128 PF08338 Domain of unknown function (DUF1731) BF29_3128 PF01370 NAD dependent epimerase/dehydratase family BF29_3129 PF03070 TENA/THI-4/PQQC family BF29_313 PF00478 IMP dehydrogenase / GMP reductase domain BF29_313 PF00571 CBS domain BF29_3132 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BF29_3135 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BF29_3135 PF02770 Acyl-CoA dehydrogenase, middle domain BF29_3135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BF29_3137 PF00288 GHMP kinases N terminal domain BF29_3137 PF08544 GHMP kinases C terminal BF29_3137 PF10509 Galactokinase galactose-binding signature BF29_3138 PF16363 GDP-mannose 4,6 dehydratase BF29_3139 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BF29_3139 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BF29_314 PF01266 FAD dependent oxidoreductase BF29_314 PF00355 Rieske [2Fe-2S] domain BF29_3140 PF01263 Aldose 1-epimerase BF29_3141 PF00356 Bacterial regulatory proteins, lacI family BF29_3147 PF13509 S1 domain BF29_3147 PF17783 CvfB-like winged helix domain BF29_3148 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BF29_3149 PF01238 Phosphomannose isomerase type I BF29_315 PF00355 Rieske [2Fe-2S] domain BF29_315 PF01266 FAD dependent oxidoreductase BF29_3150 PF04204 Homoserine O-succinyltransferase BF29_3151 PF07690 Major Facilitator Superfamily BF29_3153 PF01979 Amidohydrolase family BF29_3154 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BF29_3156 PF00877 NlpC/P60 family BF29_3156 PF01476 LysM domain BF29_3157 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BF29_3157 PF08447 PAS fold BF29_3157 PF13426 PAS domain BF29_3158 PF05223 NTF2-like N-terminal transpeptidase domain BF29_3158 PF03717 Penicillin-binding Protein dimerisation domain BF29_3158 PF00905 Penicillin binding protein transpeptidase domain BF29_3159 PF00953 Glycosyl transferase family 4 BF29_316 PF01476 LysM domain BF29_316 PF06725 3D domain BF29_3160 PF01205 Uncharacterized protein family UPF0029 BF29_3160 PF09186 Domain of unknown function (DUF1949) BF29_3161 PF05384 Sensor protein DegS BF29_3161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_3161 PF07730 Histidine kinase BF29_3162 PF00196 Bacterial regulatory proteins, luxR family BF29_3162 PF00072 Response regulator receiver domain BF29_3163 PF13520 Amino acid permease BF29_3164 PF02645 Uncharacterised protein, DegV family COG1307 BF29_3165 PF00271 Helicase conserved C-terminal domain BF29_3165 PF04851 Type III restriction enzyme, res subunit BF29_3166 PF00156 Phosphoribosyl transferase domain BF29_3168 PF04316 Anti-sigma-28 factor, FlgM BF29_317 PF00324 Amino acid permease BF29_3170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BF29_3170 PF00460 Flagella basal body rod protein BF29_3171 PF00669 Bacterial flagellin N-terminal helical region BF29_3171 PF00700 Bacterial flagellin C-terminal helical region BF29_3172 PF02623 FliW protein BF29_3173 PF02599 Global regulator protein family BF29_3174 PF00669 Bacterial flagellin N-terminal helical region BF29_3174 PF00700 Bacterial flagellin C-terminal helical region BF29_3175 PF04309 Glycerol-3-phosphate responsive antiterminator BF29_3176 PF02308 MgtC family BF29_3177 PF13344 Haloacid dehalogenase-like hydrolase BF29_3179 PF00083 Sugar (and other) transporter BF29_3181 PF00324 Amino acid permease BF29_3182 PF13654 AAA domain BF29_3182 PF05362 Lon protease (S16) C-terminal proteolytic domain BF29_319 PF01544 CorA-like Mg2+ transporter protein BF29_3192 PF07282 Putative transposase DNA-binding domain BF29_3192 PF01385 Probable transposase BF29_3192 PF12323 Helix-turn-helix domain BF29_3193 PF02245 Methylpurine-DNA glycosylase (MPG) BF29_3195 PF03646 FlaG protein BF29_3196 PF07195 Flagellar hook-associated protein 2 C-terminus BF29_3196 PF02465 Flagellar hook-associated protein 2 N-terminus BF29_3196 PF07196 Flagellin hook IN motif BF29_3197 PF02561 Flagellar protein FliS BF29_3199 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BF29_3199 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BF29_32 PF00188 Cysteine-rich secretory protein family BF29_32 PF14504 CAP-associated N-terminal BF29_3202 PF12323 Helix-turn-helix domain BF29_3202 PF01385 Probable transposase BF29_3202 PF07282 Putative transposase DNA-binding domain BF29_3204 PF02810 SEC-C motif BF29_3204 PF07517 SecA DEAD-like domain BF29_3204 PF01043 SecA preprotein cross-linking domain BF29_3204 PF07516 SecA Wing and Scaffold domain BF29_3205 PF00472 RF-1 domain BF29_3205 PF03462 PCRF domain BF29_3206 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF29_3206 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF29_3207 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF29_3208 PF00005 ABC transporter BF29_3209 PF18075 FtsX extracellular domain BF29_3209 PF02687 FtsX-like permease family BF29_321 PF13393 Histidyl-tRNA synthetase BF29_3210 PF04225 Opacity-associated protein A LysM-like domain BF29_3210 PF01551 Peptidase family M23 BF29_3211 PF13396 Phospholipase_D-nuclease N-terminal BF29_3211 PF13091 PLD-like domain BF29_3212 PF01053 Cys/Met metabolism PLP-dependent enzyme BF29_3213 PF00742 Homoserine dehydrogenase BF29_3213 PF01842 ACT domain BF29_3213 PF03447 Homoserine dehydrogenase, NAD binding domain BF29_3214 PF03572 Peptidase family S41 BF29_3214 PF01471 Putative peptidoglycan binding domain BF29_3214 PF17820 PDZ domain BF29_3215 PF17820 PDZ domain BF29_3216 PF01032 FecCD transport family BF29_3217 PF01032 FecCD transport family BF29_3218 PF00005 ABC transporter BF29_3219 PF01497 Periplasmic binding protein BF29_322 PF01634 ATP phosphoribosyltransferase BF29_3220 PF00037 4Fe-4S binding domain BF29_3223 PF00072 Response regulator receiver domain BF29_3223 PF00486 Transcriptional regulatory protein, C terminal BF29_3225 PF16736 Single Cache-like BF29_3225 PF00512 His Kinase A (phospho-acceptor) domain BF29_3225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_3225 PF00989 PAS fold BF29_3227 PF12849 PBP superfamily domain BF29_3228 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3229 PF00528 Binding-protein-dependent transport system inner membrane component BF29_323 PF00815 Histidinol dehydrogenase BF29_3230 PF00005 ABC transporter BF29_3231 PF00005 ABC transporter BF29_3236 PF04851 Type III restriction enzyme, res subunit BF29_3236 PF02151 UvrB/uvrC motif BF29_3236 PF00271 Helicase conserved C-terminal domain BF29_3236 PF17757 UvrB interaction domain BF29_3236 PF12344 Ultra-violet resistance protein B BF29_3237 PF17755 UvrA DNA-binding domain BF29_3237 PF17760 UvrA interaction domain BF29_3237 PF00005 ABC transporter BF29_3238 PF01467 Cytidylyltransferase-like BF29_3239 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BF29_324 PF00475 Imidazoleglycerol-phosphate dehydratase BF29_3240 PF00535 Glycosyl transferase family 2 BF29_325 PF00117 Glutamine amidotransferase class-I BF29_3250 PF01467 Cytidylyltransferase-like BF29_3251 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BF29_3252 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BF29_3253 PF01061 ABC-2 type transporter BF29_3254 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BF29_3254 PF00535 Glycosyl transferase family 2 BF29_3255 PF13349 Putative adhesin BF29_3257 PF07475 HPr Serine kinase C-terminal domain BF29_3257 PF02603 HPr Serine kinase N terminus BF29_3258 PF01790 Prolipoprotein diacylglyceryl transferase BF29_3259 PF13419 Haloacid dehalogenase-like hydrolase BF29_326 PF00977 Histidine biosynthesis protein BF29_3260 PF14602 Hexapeptide repeat of succinyl-transferase BF29_3262 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_3263 PF00293 NUDIX domain BF29_3264 PF03668 P-loop ATPase protein family BF29_3265 PF01933 Uncharacterised protein family UPF0052 BF29_3266 PF10298 WhiA N-terminal LAGLIDADG-like domain BF29_3266 PF14527 WhiA LAGLIDADG-like domain BF29_3266 PF02650 WhiA C-terminal HTH domain BF29_3267 PF00381 PTS HPr component phosphorylation site BF29_3268 PF00574 Clp protease BF29_327 PF00977 Histidine biosynthesis protein BF29_3273 PF10415 Fumarase C C-terminus BF29_3273 PF00206 Lyase BF29_3274 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF29_3275 PF00005 ABC transporter BF29_3275 PF17912 MalK OB fold domain BF29_3275 PF03459 TOBE domain BF29_3276 PF13556 PucR C-terminal helix-turn-helix domain BF29_3278 PF14398 YheC/D like ATP-grasp BF29_3279 PF14398 YheC/D like ATP-grasp BF29_328 PF01502 Phosphoribosyl-AMP cyclohydrolase BF29_328 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BF29_3282 PF04286 Protein of unknown function (DUF445) BF29_3283 PF06133 Control of competence regulator ComK, YlbF/YmcA BF29_3285 PF00378 Enoyl-CoA hydratase/isomerase BF29_3286 PF14120 YhzD-like protein BF29_3287 PF03741 Integral membrane protein TerC family BF29_3288 PF03773 Predicted permease BF29_3289 PF09323 Domain of unknown function (DUF1980) BF29_3290 PF00149 Calcineurin-like phosphoesterase BF29_3291 PF13514 AAA domain BF29_3292 PF01966 HD domain BF29_3293 PF14147 Sporulation protein YhaL BF29_3294 PF05698 Bacterial trigger factor protein (TF) C-terminus BF29_3297 PF08963 Protein of unknown function (DUF1878) BF29_3298 PF01047 MarR family BF29_330 PF04143 Sulphur transport BF29_3300 PF17099 Tryptophan transporter TrpP BF29_3301 PF01230 HIT domain BF29_3302 PF00005 ABC transporter BF29_3303 PF05975 Bacterial ABC transporter protein EcsB BF29_3304 PF07687 Peptidase dimerisation domain BF29_3304 PF01546 Peptidase family M20/M25/M40 BF29_3307 PF03992 Antibiotic biosynthesis monooxygenase BF29_3308 PF01208 Uroporphyrinogen decarboxylase (URO-D) BF29_331 PF00892 EamA-like transporter family BF29_3311 PF00440 Bacterial regulatory proteins, tetR family BF29_3311 PF17932 Tetracyclin repressor-like, C-terminal domain BF29_3313 PF07690 Major Facilitator Superfamily BF29_3314 PF00892 EamA-like transporter family BF29_3317 PF02630 SCO1/SenC BF29_3319 PF14149 YhfH-like protein BF29_332 PF02386 Cation transport protein BF29_3320 PF10437 Bacterial lipoate protein ligase C-terminus BF29_3320 PF03099 Biotin/lipoate A/B protein ligase family BF29_3321 PF00501 AMP-binding enzyme BF29_3321 PF13193 AMP-binding enzyme C-terminal domain BF29_3322 PF03591 AzlC protein BF29_3324 PF16491 CAAX prenyl protease N-terminal, five membrane helices BF29_3324 PF01435 Peptidase family M48 BF29_3326 PF06338 ComK protein BF29_3328 PF12705 PD-(D/E)XK nuclease superfamily BF29_3329 PF12705 PD-(D/E)XK nuclease superfamily BF29_3329 PF13361 UvrD-like helicase C-terminal domain BF29_3329 PF00580 UvrD/REP helicase N-terminal domain BF29_333 PF02080 TrkA-C domain BF29_333 PF02254 TrkA-N domain BF29_3330 PF10676 Spore germination protein gerPA/gerPF BF29_3331 PF10970 Spore germination protein GerPE BF29_3333 PF10737 Spore germination protein GerPC BF29_3334 PF10676 Spore germination protein gerPA/gerPF BF29_3335 PF04235 Protein of unknown function (DUF418) BF29_3336 PF01557 Fumarylacetoacetate (FAA) hydrolase family BF29_3337 PF07457 Protein of unknown function (DUF1516) BF29_3339 PF02645 Uncharacterised protein, DegV family COG1307 BF29_334 PF08876 Domain of unknown function (DUF1836) BF29_3340 PF12758 Protein of unknown function (DUF3813) BF29_3342 PF01883 Iron-sulfur cluster assembly protein BF29_3343 PF14168 YjzC-like protein BF29_3344 PF00004 ATPase family associated with various cellular activities (AAA) BF29_3344 PF07724 AAA domain (Cdc48 subfamily) BF29_3344 PF17871 AAA lid domain BF29_3344 PF10431 C-terminal, D2-small domain, of ClpB protein BF29_3344 PF02861 Clp amino terminal domain, pathogenicity island component BF29_3349 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BF29_3349 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BF29_3350 PF00109 Beta-ketoacyl synthase, N-terminal domain BF29_3350 PF02801 Beta-ketoacyl synthase, C-terminal domain BF29_3352 PF00005 ABC transporter BF29_3352 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF29_3353 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF29_3353 PF00005 ABC transporter BF29_3354 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3355 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3356 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF29_3357 PF12227 Protein of unknown function (DUF3603) BF29_3358 PF00579 tRNA synthetases class I (W and Y) BF29_3361 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BF29_3362 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3363 PF12911 N-terminal TM domain of oligopeptide transport permease C BF29_3363 PF00528 Binding-protein-dependent transport system inner membrane component BF29_3364 PF00005 ABC transporter BF29_3364 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF29_3365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BF29_3365 PF00005 ABC transporter BF29_3366 PF03960 ArsC family BF29_3367 PF05389 Negative regulator of genetic competence (MecA) BF29_3368 PF06054 Competence protein CoiA-like family BF29_3369 PF08439 Oligopeptidase F BF29_3369 PF01432 Peptidase family M3 BF29_337 PF07690 Major Facilitator Superfamily BF29_3372 PF01152 Bacterial-like globin BF29_3373 PF01464 Transglycosylase SLT domain BF29_3374 PF01928 CYTH domain BF29_3376 PF04607 Region found in RelA / SpoT proteins BF29_3377 PF01513 ATP-NAD kinase BF29_3378 PF00849 RNA pseudouridylate synthase BF29_3379 PF00149 Calcineurin-like phosphoesterase BF29_338 PF03109 ABC1 family BF29_3384 PF07098 Protein of unknown function (DUF1360) BF29_3387 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF29_3388 PF07451 Stage V sporulation protein AD (SpoVAD) BF29_3389 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BF29_3391 PF14069 Stage VI sporulation protein F BF29_3393 PF13673 Acetyltransferase (GNAT) domain BF29_3395 PF00756 Putative esterase BF29_340 PF01625 Peptide methionine sulfoxide reductase BF29_3401 PF00480 ROK family BF29_3403 PF00005 ABC transporter BF29_3403 PF13732 Domain of unknown function (DUF4162) BF29_3405 PF03051 Peptidase C1-like family BF29_3406 PF01432 Peptidase family M3 BF29_3406 PF08439 Oligopeptidase F BF29_3407 PF03698 Uncharacterised protein family (UPF0180) BF29_3408 PF13193 AMP-binding enzyme C-terminal domain BF29_3408 PF00501 AMP-binding enzyme BF29_3409 PF02417 Chromate transporter BF29_3410 PF02417 Chromate transporter BF29_3411 PF01037 Lrp/AsnC ligand binding domain BF29_3411 PF13404 AsnC-type helix-turn-helix domain BF29_3414 PF10114 Sensory domain found in PocR BF29_3414 PF12833 Helix-turn-helix domain BF29_3415 PF00871 Acetokinase family BF29_3416 PF01717 Cobalamin-independent synthase, Catalytic domain BF29_342 PF00313 'Cold-shock' DNA-binding domain BF29_3421 PF01580 FtsK/SpoIIIE family BF29_3421 PF12538 DNA transporter BF29_3422 PF01527 Transposase BF29_3423 PF13333 Integrase core domain BF29_3423 PF13276 HTH-like domain BF29_3423 PF00665 Integrase core domain BF29_3424 PF04239 Protein of unknown function (DUF421) BF29_3428 PF07451 Stage V sporulation protein AD (SpoVAD) BF29_343 PF01227 GTP cyclohydrolase I BF29_3432 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BF29_3432 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BF29_3433 PF07690 Major Facilitator Superfamily BF29_3435 PF02082 Transcriptional regulator BF29_3436 PF00175 Oxidoreductase NAD-binding domain BF29_3436 PF00042 Globin BF29_3436 PF00970 Oxidoreductase FAD-binding domain BF29_3437 PF01925 Sulfite exporter TauE/SafE BF29_3438 PF00210 Ferritin-like domain BF29_3439 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BF29_3439 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BF29_344 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_344 PF13192 Thioredoxin domain BF29_3440 PF00512 His Kinase A (phospho-acceptor) domain BF29_3440 PF00989 PAS fold BF29_3440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_3441 PF03144 Elongation factor Tu domain 2 BF29_3441 PF00009 Elongation factor Tu GTP binding domain BF29_3441 PF16658 Class II release factor RF3, C-terminal domain BF29_3443 PF03741 Integral membrane protein TerC family BF29_3444 PF00269 Small, acid-soluble spore proteins, alpha/beta type BF29_3447 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_3447 PF00512 His Kinase A (phospho-acceptor) domain BF29_3447 PF13426 PAS domain BF29_3447 PF00989 PAS fold BF29_3447 PF13188 PAS domain BF29_3448 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BF29_3448 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BF29_3450 PF09388 Spo0E like sporulation regulatory protein BF29_3451 PF00004 ATPase family associated with various cellular activities (AAA) BF29_3451 PF07724 AAA domain (Cdc48 subfamily) BF29_3451 PF10431 C-terminal, D2-small domain, of ClpB protein BF29_3451 PF17871 AAA lid domain BF29_3454 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BF29_3456 PF00381 PTS HPr component phosphorylation site BF29_3457 PF05524 PEP-utilising enzyme, N-terminal BF29_3457 PF00391 PEP-utilising enzyme, mobile domain BF29_3457 PF02896 PEP-utilising enzyme, TIM barrel domain BF29_3459 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF29_3459 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF29_3460 PF00155 Aminotransferase class I and II BF29_3461 PF01584 CheW-like domain BF29_3461 PF00072 Response regulator receiver domain BF29_3462 PF14177 YkyB-like protein BF29_3463 PF03176 MMPL family BF29_3468 PF03069 Acetamidase/Formamidase family BF29_3469 PF08796 Protein of unknown function (DUF1797) BF29_347 PF02687 FtsX-like permease family BF29_348 PF00005 ABC transporter BF29_349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_35 PF14003 YlbE-like protein BF29_350 PF00072 Response regulator receiver domain BF29_350 PF00486 Transcriptional regulatory protein, C terminal BF29_351 PF00324 Amino acid permease BF29_352 PF13039 Protein of unknown function (DUF3900) BF29_352 PF13037 Domain of unknown function (DUF3898) BF29_353 PF07690 Major Facilitator Superfamily BF29_355 PF00664 ABC transporter transmembrane region BF29_355 PF00005 ABC transporter BF29_356 PF00005 ABC transporter BF29_356 PF00664 ABC transporter transmembrane region BF29_358 PF03788 LrgA family BF29_359 PF04172 LrgB-like family BF29_360 PF13193 AMP-binding enzyme C-terminal domain BF29_360 PF00501 AMP-binding enzyme BF29_363 PF08179 Small acid-soluble spore protein P family BF29_365 PF02073 Thermophilic metalloprotease (M29) BF29_367 PF00330 Aconitase family (aconitate hydratase) BF29_367 PF00694 Aconitase C-terminal domain BF29_369 PF08177 Small acid-soluble spore protein N family BF29_37 PF06133 Control of competence regulator ComK, YlbF/YmcA BF29_371 PF03061 Thioesterase superfamily BF29_373 PF01521 Iron-sulphur cluster biosynthesis BF29_374 PF02660 Glycerol-3-phosphate acyltransferase BF29_375 PF13380 CoA binding domain BF29_376 PF01751 Toprim domain BF29_376 PF00204 DNA gyrase B BF29_376 PF00986 DNA gyrase B subunit, carboxyl terminus BF29_376 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_377 PF00521 DNA gyrase/topoisomerase IV, subunit A BF29_377 PF03989 DNA gyrase C-terminal domain, beta-propeller BF29_380 PF03618 Kinase/pyrophosphorylase BF29_381 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BF29_381 PF02896 PEP-utilising enzyme, TIM barrel domain BF29_381 PF00391 PEP-utilising enzyme, mobile domain BF29_385 PF03060 Nitronate monooxygenase BF29_386 PF10502 Signal peptidase, peptidase S26 BF29_388 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BF29_389 PF00583 Acetyltransferase (GNAT) family BF29_391 PF00583 Acetyltransferase (GNAT) family BF29_394 PF02110 Hydroxyethylthiazole kinase family BF29_395 PF08543 Phosphomethylpyrimidine kinase BF29_396 PF02581 Thiamine monophosphate synthase BF29_398 PF03475 3-alpha domain BF29_398 PF03473 MOSC domain BF29_4 PF00753 Metallo-beta-lactamase superfamily BF29_4 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BF29_4 PF17770 Ribonuclease J C-terminal domain BF29_407 PF17922 Tetracyclin repressor-like, C-terminal domain BF29_407 PF00440 Bacterial regulatory proteins, tetR family BF29_41 PF01467 Cytidylyltransferase-like BF29_411 PF00528 Binding-protein-dependent transport system inner membrane component BF29_412 PF09084 NMT1/THI5 like BF29_414 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) BF29_415 PF04029 2-phosphosulpholactate phosphatase BF29_416 PF00667 FAD binding domain BF29_416 PF00258 Flavodoxin BF29_416 PF00175 Oxidoreductase NAD-binding domain BF29_417 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BF29_417 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BF29_42 PF07670 Nucleoside recognition BF29_422 PF07687 Peptidase dimerisation domain BF29_422 PF01546 Peptidase family M20/M25/M40 BF29_423 PF13536 Putative multidrug resistance efflux transporter BF29_424 PF00676 Dehydrogenase E1 component BF29_425 PF02779 Transketolase, pyrimidine binding domain BF29_425 PF02780 Transketolase, C-terminal domain BF29_426 PF02817 e3 binding domain BF29_426 PF00364 Biotin-requiring enzyme BF29_426 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF29_427 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_427 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF29_428 PF01590 GAF domain BF29_428 PF02954 Bacterial regulatory protein, Fis family BF29_428 PF00158 Sigma-54 interaction domain BF29_429 PF12795 Mechanosensitive ion channel porin domain BF29_429 PF12794 Mechanosensitive ion channel inner membrane domain 1 BF29_429 PF00924 Mechanosensitive ion channel BF29_43 PF01734 Patatin-like phospholipase BF29_431 PF00268 Ribonucleotide reductase, small chain BF29_432 PF01661 Macro domain BF29_433 PF08141 Small acid-soluble spore protein H family BF29_434 PF00106 short chain dehydrogenase BF29_435 PF00108 Thiolase, N-terminal domain BF29_435 PF02803 Thiolase, C-terminal domain BF29_436 PF00501 AMP-binding enzyme BF29_436 PF13193 AMP-binding enzyme C-terminal domain BF29_437 PF02334 Replication terminator protein BF29_440 PF01695 IstB-like ATP binding protein BF29_443 PF04238 Protein of unknown function (DUF420) BF29_446 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BF29_446 PF00056 lactate/malate dehydrogenase, NAD binding domain BF29_447 PF02254 TrkA-N domain BF29_447 PF00999 Sodium/hydrogen exchanger family BF29_45 PF05362 Lon protease (S16) C-terminal proteolytic domain BF29_45 PF13180 PDZ domain BF29_451 PF00582 Universal stress protein family BF29_452 PF03601 Conserved hypothetical protein 698 BF29_455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BF29_455 PF03466 LysR substrate binding domain BF29_456 PF13276 HTH-like domain BF29_456 PF00665 Integrase core domain BF29_456 PF13333 Integrase core domain BF29_457 PF01527 Transposase BF29_46 PF05636 HIGH Nucleotidyl Transferase BF29_465 PF01695 IstB-like ATP binding protein BF29_466 PF01022 Bacterial regulatory protein, arsR family BF29_467 PF01758 Sodium Bile acid symporter family BF29_468 PF01451 Low molecular weight phosphotyrosine protein phosphatase BF29_469 PF06953 Arsenical resistance operon trans-acting repressor ArsD BF29_47 PF02620 Large ribosomal RNA subunit accumulation protein YceD BF29_471 PF02374 Anion-transporting ATPase BF29_476 PF07486 Cell Wall Hydrolase BF29_477 PF07690 Major Facilitator Superfamily BF29_478 PF03372 Endonuclease/Exonuclease/phosphatase family BF29_479 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF29_479 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BF29_48 PF01783 Ribosomal L32p protein family BF29_480 PF00534 Glycosyl transferases group 1 BF29_480 PF08323 Starch synthase catalytic domain BF29_481 PF00483 Nucleotidyl transferase BF29_482 PF00132 Bacterial transferase hexapeptide (six repeats) BF29_482 PF00483 Nucleotidyl transferase BF29_483 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BF29_483 PF00128 Alpha amylase, catalytic domain BF29_483 PF02806 Alpha amylase, C-terminal all-beta domain BF29_485 PF14139 YpzG-like protein BF29_487 PF00583 Acetyltransferase (GNAT) family BF29_488 PF00293 NUDIX domain BF29_489 PF01566 Natural resistance-associated macrophage protein BF29_490 PF00210 Ferritin-like domain BF29_492 PF12679 ABC-2 family transporter protein BF29_493 PF00005 ABC transporter BF29_495 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BF29_495 PF01565 FAD binding domain BF29_499 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BF29_499 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BF29_50 PF13508 Acetyltransferase (GNAT) domain BF29_504 PF00581 Rhodanese-like domain BF29_505 PF00586 AIR synthase related protein, N-terminal domain BF29_505 PF02769 AIR synthase related protein, C-terminal domain BF29_508 PF03773 Predicted permease BF29_509 PF00171 Aldehyde dehydrogenase family BF29_51 PF08546 Ketopantoate reductase PanE/ApbA C terminal BF29_51 PF02558 Ketopantoate reductase PanE/ApbA BF29_510 PF00696 Amino acid kinase family BF29_510 PF01472 PUA domain BF29_511 PF07849 Protein of unknown function (DUF1641) BF29_512 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_514 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BF29_515 PF13529 Peptidase_C39 like family BF29_516 PF13411 MerR HTH family regulatory protein BF29_517 PF01327 Polypeptide deformylase BF29_519 PF02421 Ferrous iron transport protein B BF29_519 PF07670 Nucleoside recognition BF29_519 PF07664 Ferrous iron transport protein B C terminus BF29_519 PF17910 FeoB cytosolic helical domain BF29_52 PF10079 Bacillithiol biosynthesis BshC BF29_522 PF00155 Aminotransferase class I and II BF29_523 PF14698 Argininosuccinate lyase C-terminal BF29_523 PF00206 Lyase BF29_524 PF00764 Arginosuccinate synthase BF29_525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF29_525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF29_526 PF02142 MGS-like domain BF29_526 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF29_526 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF29_527 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF29_527 PF00117 Glutamine amidotransferase class-I BF29_528 PF00202 Aminotransferase class-III BF29_529 PF00696 Amino acid kinase family BF29_53 PF02381 MraZ protein, putative antitoxin-like BF29_530 PF01960 ArgJ family BF29_531 PF01118 Semialdehyde dehydrogenase, NAD binding domain BF29_531 PF02774 Semialdehyde dehydrogenase, dimerisation domain BF29_536 PF00313 'Cold-shock' DNA-binding domain BF29_538 PF17676 LD-carboxypeptidase C-terminal domain BF29_538 PF02016 LD-carboxypeptidase N-terminal domain BF29_539 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BF29_54 PF01795 MraW methylase family BF29_540 PF01553 Acyltransferase BF29_541 PF11084 Protein of unknown function (DUF2621) BF29_542 PF07301 Protein of unknown function (DUF1453) BF29_543 PF00072 Response regulator receiver domain BF29_544 PF02683 Cytochrome C biogenesis protein transmembrane region BF29_545 PF03672 Uncharacterised protein family (UPF0154) BF29_546 PF10747 Sporulation inhibitor of replication protein SirA BF29_547 PF00456 Transketolase, thiamine diphosphate binding domain BF29_547 PF02779 Transketolase, pyrimidine binding domain BF29_547 PF02780 Transketolase, C-terminal domain BF29_548 PF05979 Bacterial protein of unknown function (DUF896) BF29_549 PF00239 Resolvase, N terminal domain BF29_55 PF04977 Septum formation initiator BF29_550 PF01476 LysM domain BF29_551 PF01726 LexA DNA binding domain BF29_551 PF00717 Peptidase S24-like BF29_552 PF03951 Glutamine synthetase, beta-Grasp domain BF29_552 PF00120 Glutamine synthetase, catalytic domain BF29_553 PF13411 MerR HTH family regulatory protein BF29_554 PF00350 Dynamin family BF29_557 PF00860 Permease family BF29_558 PF00156 Phosphoribosyl transferase domain BF29_559 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BF29_560 PF01170 Putative RNA methylase family UPF0020 BF29_560 PF02926 THUMP domain BF29_561 PF05103 DivIVA protein BF29_562 PF06908 YspA SLOG family BF29_564 PF13482 RNase_H superfamily BF29_565 PF00271 Helicase conserved C-terminal domain BF29_565 PF09369 Domain of unknown function (DUF1998) BF29_565 PF00270 DEAD/DEAH box helicase BF29_566 PF00011 Hsp20/alpha crystallin family BF29_567 PF14179 YppG-like protein BF29_57 PF03717 Penicillin-binding Protein dimerisation domain BF29_57 PF00905 Penicillin binding protein transpeptidase domain BF29_57 PF03793 PASTA domain BF29_572 PF03838 Recombination protein U BF29_573 PF00912 Transglycosylase BF29_573 PF00905 Penicillin binding protein transpeptidase domain BF29_574 PF00633 Helix-hairpin-helix motif BF29_574 PF00730 HhH-GPD superfamily base excision DNA repair protein BF29_574 PF10576 Iron-sulfur binding domain of endonuclease III BF29_575 PF07261 Replication initiation and membrane attachment BF29_576 PF01336 OB-fold nucleic acid binding domain BF29_576 PF00152 tRNA synthetases class II (D, K and N) BF29_577 PF00155 Aminotransferase class I and II BF29_579 PF04851 Type III restriction enzyme, res subunit BF29_579 PF00929 Exonuclease BF29_579 PF13307 Helicase C-terminal domain BF29_58 PF08245 Mur ligase middle domain BF29_58 PF01225 Mur ligase family, catalytic domain BF29_58 PF02875 Mur ligase family, glutamate ligase domain BF29_580 PF02261 Aspartate decarboxylase BF29_581 PF02569 Pantoate-beta-alanine ligase BF29_582 PF02548 Ketopantoate hydroxymethyltransferase BF29_583 PF03099 Biotin/lipoate A/B protein ligase family BF29_583 PF02237 Biotin protein ligase C terminal domain BF29_583 PF08279 HTH domain BF29_584 PF13735 tRNA nucleotidyltransferase domain 2 putative BF29_584 PF12627 Probable RNA and SrmB- binding site of polymerase A BF29_584 PF01743 Poly A polymerase head domain BF29_585 PF13439 Glycosyltransferase Family 4 BF29_585 PF00534 Glycosyl transferases group 1 BF29_586 PF02585 GlcNAc-PI de-N-acetylase BF29_587 PF05173 Dihydrodipicolinate reductase, C-terminus BF29_587 PF01113 Dihydrodipicolinate reductase, N-terminus BF29_588 PF03819 MazG nucleotide pyrophosphohydrolase domain BF29_589 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BF29_589 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BF29_591 PF04298 Putative neutral zinc metallopeptidase BF29_592 PF09577 Sporulation protein YpjB (SpoYpjB) BF29_593 PF07187 Protein of unknown function (DUF1405) BF29_594 PF00032 Cytochrome b(C-terminal)/b6/petD BF29_594 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF29_595 PF00033 Cytochrome b/b6/petB BF29_596 PF00355 Rieske [2Fe-2S] domain BF29_598 PF08858 IDEAL domain BF29_598 PF08864 UPF0302 domain BF29_6 PF00676 Dehydrogenase E1 component BF29_60 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BF29_60 PF00953 Glycosyl transferase family 4 BF29_600 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BF29_601 PF02153 Prephenate dehydrogenase BF29_601 PF01842 ACT domain BF29_602 PF00155 Aminotransferase class I and II BF29_603 PF07736 Chorismate mutase type I BF29_604 PF01761 3-dehydroquinate synthase BF29_605 PF01264 Chorismate synthase BF29_606 PF03705 CheR methyltransferase, all-alpha domain BF29_606 PF01739 CheR methyltransferase, SAM binding domain BF29_607 PF00334 Nucleoside diphosphate kinase BF29_608 PF00348 Polyprenyl synthetase BF29_609 PF01209 ubiE/COQ5 methyltransferase family BF29_61 PF02875 Mur ligase family, glutamate ligase domain BF29_61 PF08245 Mur ligase middle domain BF29_610 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BF29_611 PF02081 Tryptophan RNA-binding attenuator protein BF29_612 PF00216 Bacterial DNA-binding protein BF29_613 PF09547 Stage IV sporulation protein A (spore_IV_A) BF29_616 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BF29_616 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BF29_617 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BF29_617 PF01926 50S ribosome-binding GTPase BF29_619 PF14140 YpzI-like protein BF29_62 PF01098 Cell cycle protein BF29_620 PF00575 S1 RNA binding domain BF29_621 PF02224 Cytidylate kinase BF29_623 PF14620 YpeB sporulation BF29_623 PF03413 Peptidase propeptide and YPEB domain BF29_624 PF07486 Cell Wall Hydrolase BF29_624 PF01471 Putative peptidoglycan binding domain BF29_625 PF13367 PrsW family intramembrane metalloprotease BF29_627 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF29_627 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF29_629 PF00149 Calcineurin-like phosphoesterase BF29_63 PF04101 Glycosyltransferase family 28 C-terminal domain BF29_63 PF03033 Glycosyltransferase family 28 N-terminal domain BF29_631 PF12652 CotJB protein BF29_632 PF05067 Manganese containing catalase BF29_633 PF10864 Protein of unknown function (DUF2663) BF29_635 PF02517 CPBP intramembrane metalloprotease BF29_636 PF00270 DEAD/DEAH box helicase BF29_636 PF00271 Helicase conserved C-terminal domain BF29_64 PF08478 POTRA domain, FtsQ-type BF29_640 PF12822 ECF transporter, substrate-specific component BF29_641 PF10145 Phage-related minor tail protein BF29_641 PF01551 Peptidase family M23 BF29_641 PF01464 Transglycosylase SLT domain BF29_642 PF00512 His Kinase A (phospho-acceptor) domain BF29_642 PF00989 PAS fold BF29_642 PF18698 Histidine kinase sensor domain BF29_642 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BF29_642 PF00672 HAMP domain BF29_643 PF00072 Response regulator receiver domain BF29_643 PF00486 Transcriptional regulatory protein, C terminal BF29_644 PF01578 Cytochrome C assembly protein BF29_645 PF05140 ResB-like family BF29_646 PF00578 AhpC/TSA family BF29_647 PF00849 RNA pseudouridylate synthase BF29_647 PF01479 S4 domain BF29_648 PF07670 Nucleoside recognition BF29_649 PF07670 Nucleoside recognition BF29_65 PF02491 SHS2 domain inserted in FTSA BF29_650 PF07943 Penicillin-binding protein 5, C-terminal domain BF29_650 PF00768 D-alanyl-D-alanine carboxypeptidase BF29_651 PF04079 Segregation and condensation complex subunit ScpB BF29_652 PF02616 Segregation and condensation protein ScpA BF29_653 PF09680 Family of unknown function BF29_654 PF00583 Acetyltransferase (GNAT) family BF29_655 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BF29_655 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BF29_656 PF03323 Bacillus/Clostridium GerA spore germination protein BF29_657 PF14097 Stage V sporulation protein AE1 BF29_658 PF13782 Stage V sporulation protein AB BF29_659 PF12164 Stage V sporulation protein AA BF29_66 PF00091 Tubulin/FtsZ family, GTPase domain BF29_66 PF12327 FtsZ family, C-terminal domain BF29_660 PF04545 Sigma-70, region 4 BF29_660 PF04539 Sigma-70 region 3 BF29_660 PF04542 Sigma-70 region 2 BF29_661 PF13581 Histidine kinase-like ATPase domain BF29_662 PF01740 STAS domain BF29_663 PF07943 Penicillin-binding protein 5, C-terminal domain BF29_663 PF00768 D-alanyl-D-alanine carboxypeptidase BF29_665 PF00589 Phage integrase family BF29_665 PF02899 Phage integrase, N-terminal SAM-like domain BF29_666 PF14004 Protein of unknown function (DUF4227) BF29_667 PF01475 Ferric uptake regulator family BF29_668 PF01944 Stage II sporulation protein M BF29_67 PF03419 Sporulation factor SpoIIGA BF29_670 PF00293 NUDIX domain BF29_671 PF13072 Mother cell inhibitor of FtsZ BF29_672 PF00248 Aldo/keto reductase family BF29_674 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein BF29_675 PF05816 Toxic anion resistance protein (TelA) BF29_676 PF12146 Serine aminopeptidase, S33 BF29_677 PF01476 LysM domain BF29_677 PF00704 Glycosyl hydrolases family 18 BF29_678 PF08863 YolD-like protein BF29_679 PF00817 impB/mucB/samB family BF29_679 PF11799 impB/mucB/samB family C-terminal domain BF29_68 PF04542 Sigma-70 region 2 BF29_68 PF04545 Sigma-70, region 4 BF29_680 PF00106 short chain dehydrogenase BF29_681 PF03807 NADP oxidoreductase coenzyme F420-dependent BF29_681 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF29_682 PF12706 Beta-lactamase superfamily domain BF29_683 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BF29_683 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BF29_684 PF11799 impB/mucB/samB family C-terminal domain BF29_684 PF00817 impB/mucB/samB family BF29_684 PF11798 IMS family HHH motif BF29_686 PF01546 Peptidase family M20/M25/M40 BF29_686 PF07687 Peptidase dimerisation domain BF29_688 PF03734 L,D-transpeptidase catalytic domain BF29_689 PF06491 Disulphide isomerase BF29_69 PF04545 Sigma-70, region 4 BF29_69 PF04539 Sigma-70 region 3 BF29_69 PF04542 Sigma-70 region 2 BF29_690 PF00294 pfkB family carbohydrate kinase BF29_691 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF29_691 PF00364 Biotin-requiring enzyme BF29_691 PF02817 e3 binding domain BF29_692 PF02779 Transketolase, pyrimidine binding domain BF29_692 PF02780 Transketolase, C-terminal domain BF29_693 PF00676 Dehydrogenase E1 component BF29_694 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF29_694 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_695 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BF29_695 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF29_696 PF00989 PAS fold BF29_696 PF02954 Bacterial regulatory protein, Fis family BF29_696 PF00158 Sigma-54 interaction domain BF29_699 PF03009 Glycerophosphoryl diester phosphodiesterase family BF29_7 PF02779 Transketolase, pyrimidine binding domain BF29_7 PF02780 Transketolase, C-terminal domain BF29_70 PF05239 PRC-barrel domain BF29_700 PF08769 Sporulation initiation factor Spo0A C terminal BF29_700 PF00072 Response regulator receiver domain BF29_701 PF17820 PDZ domain BF29_701 PF05580 SpoIVB peptidase S55 BF29_702 PF13476 AAA domain BF29_703 PF02863 Arginine repressor, C-terminal domain BF29_703 PF01316 Arginine repressor, DNA binding domain BF29_704 PF01728 FtsJ-like methyltransferase BF29_704 PF01479 S4 domain BF29_705 PF02780 Transketolase, C-terminal domain BF29_705 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BF29_705 PF02779 Transketolase, pyrimidine binding domain BF29_706 PF00348 Polyprenyl synthetase BF29_707 PF02609 Exonuclease VII small subunit BF29_708 PF02601 Exonuclease VII, large subunit BF29_708 PF13742 OB-fold nucleic acid binding domain BF29_709 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BF29_709 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BF29_71 PF01476 LysM domain BF29_71 PF06725 3D domain BF29_710 PF01029 NusB family BF29_711 PF03780 Asp23 family, cell envelope-related function BF29_712 PF00289 Biotin carboxylase, N-terminal domain BF29_712 PF02785 Biotin carboxylase C-terminal domain BF29_712 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF29_713 PF00364 Biotin-requiring enzyme BF29_714 PF12685 SpoIIIAH-like protein BF29_716 PF09581 Stage III sporulation protein AF (Spore_III_AF) BF29_717 PF09546 Stage III sporulation protein AE (spore_III_AE) BF29_718 PF06686 Stage III sporulation protein AC/AD protein family BF29_719 PF06686 Stage III sporulation protein AC/AD protein family BF29_720 PF09548 Stage III sporulation protein AB (spore_III_AB) BF29_722 PF09285 Elongation factor P, C-terminal BF29_722 PF08207 Elongation factor P (EF-P) KOW-like domain BF29_722 PF01132 Elongation factor P (EF-P) OB domain BF29_723 PF01321 Creatinase/Prolidase N-terminal domain BF29_723 PF00557 Metallopeptidase family M24 BF29_724 PF01220 Dehydroquinase class II BF29_725 PF11085 Conserved membrane protein YqhR BF29_726 PF07136 Protein of unknown function (DUF1385) BF29_728 PF01734 Patatin-like phospholipase BF29_73 PF01168 Alanine racemase, N-terminal domain BF29_730 PF01734 Patatin-like phospholipase BF29_731 PF02803 Thiolase, C-terminal domain BF29_731 PF00108 Thiolase, N-terminal domain BF29_732 PF00317 Ribonucleotide reductase, all-alpha domain BF29_732 PF03477 ATP cone domain BF29_732 PF02867 Ribonucleotide reductase, barrel domain BF29_733 PF03099 Biotin/lipoate A/B protein ligase family BF29_734 PF00581 Rhodanese-like domain BF29_735 PF02347 Glycine cleavage system P-protein BF29_736 PF02347 Glycine cleavage system P-protein BF29_737 PF01571 Aminomethyltransferase folate-binding domain BF29_737 PF08669 Glycine cleavage T-protein C-terminal barrel domain BF29_738 PF00271 Helicase conserved C-terminal domain BF29_738 PF00176 SNF2 family N-terminal domain BF29_739 PF11079 Bacterial protein YqhG of unknown function BF29_74 PF04472 Cell division protein SepF BF29_741 PF01202 Shikimate kinase BF29_746 PF07963 Prokaryotic N-terminal methylation motif BF29_747 PF00482 Type II secretion system (T2SS), protein F BF29_748 PF00437 Type II/IV secretion system protein BF29_75 PF02325 YGGT family BF29_750 PF11117 Protein of unknown function (DUF2626) BF29_751 PF00753 Metallo-beta-lactamase superfamily BF29_753 PF00480 ROK family BF29_754 PF06014 Bacterial protein of unknown function (DUF910) BF29_755 PF01694 Rhomboid family BF29_757 PF00471 Ribosomal protein L33 BF29_76 PF01479 S4 domain BF29_76 PF17774 Putative RNA-binding domain in YlmH BF29_760 PF07690 Major Facilitator Superfamily BF29_761 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BF29_761 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BF29_763 PF04551 GcpE protein BF29_764 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) BF29_765 PF01475 Ferric uptake regulator family BF29_766 PF00950 ABC 3 transport family BF29_767 PF00005 ABC transporter BF29_769 PF00877 NlpC/P60 family BF29_77 PF05103 DivIVA protein BF29_770 PF01261 Xylose isomerase-like TIM barrel BF29_771 PF00271 Helicase conserved C-terminal domain BF29_771 PF00270 DEAD/DEAH box helicase BF29_773 PF02401 LytB protein BF29_774 PF01784 NIF3 (NGG1p interacting factor 3) BF29_775 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BF29_776 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BF29_778 PF03979 Sigma-70 factor, region 1.1 BF29_778 PF00140 Sigma-70 factor, region 1.2 BF29_778 PF04542 Sigma-70 region 2 BF29_778 PF04539 Sigma-70 region 3 BF29_778 PF04545 Sigma-70, region 4 BF29_779 PF08275 DNA primase catalytic core, N-terminal domain BF29_779 PF01807 CHC2 zinc finger BF29_779 PF10410 DnaB-helicase binding domain of primase BF29_78 PF00133 tRNA synthetases class I (I, L, M and V) BF29_78 PF06827 Zinc finger found in FPG and IleRS BF29_78 PF08264 Anticodon-binding domain of tRNA BF29_780 PF03618 Kinase/pyrophosphorylase BF29_781 PF00571 CBS domain BF29_781 PF08279 HTH domain BF29_783 PF11967 Recombination protein O N terminal BF29_783 PF02565 Recombination protein O C terminal BF29_784 PF14006 YqzL-like protein BF29_785 PF01926 50S ribosome-binding GTPase BF29_785 PF07650 KH domain BF29_786 PF01219 Prokaryotic diacylglycerol kinase BF29_787 PF02130 Uncharacterized protein family UPF0054 BF29_790 PF02562 PhoH-like protein BF29_791 PF06898 Putative stage IV sporulation protein YqfD BF29_792 PF07873 YabP family BF29_793 PF09424 Yqey-like protein BF29_794 PF01165 Ribosomal protein S21 BF29_795 PF00708 Acylphosphatase BF29_796 PF02690 Na+/Pi-cotransporter BF29_797 PF01938 TRAM domain BF29_797 PF04055 Radical SAM superfamily BF29_797 PF00919 Uncharacterized protein family UPF0004 BF29_798 PF04452 RNA methyltransferase BF29_8 PF02817 e3 binding domain BF29_8 PF00364 Biotin-requiring enzyme BF29_8 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BF29_80 PF01252 Signal peptidase (SPase) II BF29_800 PF00226 DnaJ domain BF29_800 PF00684 DnaJ central domain BF29_800 PF01556 DnaJ C terminal domain BF29_801 PF00012 Hsp70 protein BF29_802 PF01025 GrpE BF29_803 PF01628 HrcA protein C terminal domain BF29_804 PF06969 HemN C-terminal domain BF29_804 PF04055 Radical SAM superfamily BF29_805 PF06421 GTP-binding protein LepA C-terminus BF29_805 PF00009 Elongation factor Tu GTP binding domain BF29_805 PF03144 Elongation factor Tu domain 2 BF29_805 PF00679 Elongation factor G C-terminus BF29_806 PF07454 Stage II sporulation protein P (SpoIIP) BF29_807 PF03418 Germination protease BF29_808 PF01649 Ribosomal protein S20 BF29_809 PF06144 DNA polymerase III, delta subunit BF29_81 PF01479 S4 domain BF29_81 PF00849 RNA pseudouridylate synthase BF29_810 PF14141 YqzM-like protein BF29_811 PF13567 Domain of unknown function (DUF4131) BF29_811 PF03772 Competence protein BF29_811 PF00753 Metallo-beta-lactamase superfamily BF29_812 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BF29_813 PF10531 SLBB domain BF29_814 PF14748 Pyrroline-5-carboxylate reductase dimerisation BF29_814 PF03807 NADP oxidoreductase coenzyme F420-dependent BF29_815 PF13649 Methyltransferase domain BF29_817 PF01966 HD domain BF29_818 PF01467 Cytidylyltransferase-like BF29_819 PF01985 CRS1 / YhbY (CRM) domain BF29_82 PF00156 Phosphoribosyl transferase domain BF29_820 PF01488 Shikimate / quinate 5-dehydrogenase BF29_820 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BF29_820 PF08501 Shikimate dehydrogenase substrate binding domain BF29_821 PF01926 50S ribosome-binding GTPase BF29_823 PF02754 Cysteine-rich domain BF29_823 PF13183 4Fe-4S dicluster domain BF29_824 PF01565 FAD binding domain BF29_824 PF02913 FAD linked oxidases, C-terminal domain BF29_825 PF13556 PucR C-terminal helix-turn-helix domain BF29_825 PF17853 GGDEF-like domain BF29_825 PF05651 Putative sugar diacid recognition BF29_826 PF07732 Multicopper oxidase BF29_826 PF07731 Multicopper oxidase BF29_827 PF00011 Hsp20/alpha crystallin family BF29_829 PF00578 AhpC/TSA family BF29_83 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BF29_83 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BF29_831 PF04011 LemA family BF29_832 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF29_833 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BF29_835 PF16916 Dimerisation domain of Zinc Transporter BF29_835 PF01545 Cation efflux family BF29_836 PF08970 Sporulation inhibitor A BF29_837 PF01066 CDP-alcohol phosphatidyltransferase BF29_838 PF04542 Sigma-70 region 2 BF29_838 PF04545 Sigma-70, region 4 BF29_839 PF13192 Thioredoxin domain BF29_839 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_84 PF01979 Amidohydrolase family BF29_840 PF00578 AhpC/TSA family BF29_841 PF09501 Probable sporulation protein (Bac_small_yrzI) BF29_842 PF14143 YrhC-like protein BF29_843 PF01048 Phosphorylase superfamily BF29_845 PF07423 Domain of unknown function (DUF1510) BF29_846 PF03449 Transcription elongation factor, N-terminal BF29_846 PF01272 Transcription elongation factor, GreA/GreB, C-term BF29_847 PF00485 Phosphoribulokinase / Uridine kinase family BF29_849 PF02618 YceG-like family BF29_85 PF00117 Glutamine amidotransferase class-I BF29_85 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BF29_850 PF06949 Protein of unknown function (DUF1292) BF29_851 PF03652 Holliday junction resolvase BF29_852 PF06135 IreB regulatory phosphoprotein BF29_853 PF01411 tRNA synthetases class II (A) BF29_853 PF02272 DHHA1 domain BF29_853 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BF29_854 PF01594 AI-2E family transporter BF29_857 PF10710 Protein of unknown function (DUF2512) BF29_858 PF13538 UvrD-like helicase C-terminal domain BF29_858 PF14490 Helix-hairpin-helix containing domain BF29_858 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BF29_86 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF29_86 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BF29_86 PF02142 MGS-like domain BF29_861 PF00266 Aminotransferase class-V BF29_862 PF02082 Transcriptional regulator BF29_865 PF03323 Bacillus/Clostridium GerA spore germination protein BF29_866 PF01925 Sulfite exporter TauE/SafE BF29_867 PF01206 Sulfurtransferase TusA BF29_868 PF00581 Rhodanese-like domain BF29_868 PF00753 Metallo-beta-lactamase superfamily BF29_869 PF13686 DsrE/DsrF/DrsH-like family BF29_87 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BF29_87 PF00970 Oxidoreductase FAD-binding domain BF29_870 PF00581 Rhodanese-like domain BF29_870 PF01206 Sulfurtransferase TusA BF29_871 PF00581 Rhodanese-like domain BF29_872 PF02583 Metal-sensitive transcriptional repressor BF29_876 PF00578 AhpC/TSA family BF29_877 PF00085 Thioredoxin BF29_878 PF02683 Cytochrome C biogenesis protein transmembrane region BF29_88 PF01180 Dihydroorotate dehydrogenase BF29_880 PF00486 Transcriptional regulatory protein, C terminal BF29_880 PF00072 Response regulator receiver domain BF29_881 PF00578 AhpC/TSA family BF29_882 PF01695 IstB-like ATP binding protein BF29_888 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF29_888 PF16193 AAA C-terminal domain BF29_888 PF12002 MgsA AAA+ ATPase C terminal BF29_889 PF00899 ThiF family BF29_89 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BF29_890 PF01758 Sodium Bile acid symporter family BF29_892 PF00152 tRNA synthetases class II (D, K and N) BF29_892 PF02938 GAD domain BF29_892 PF01336 OB-fold nucleic acid binding domain BF29_893 PF13393 Histidyl-tRNA synthetase BF29_893 PF03129 Anticodon binding domain BF29_895 PF08239 Bacterial SH3 domain BF29_895 PF01520 N-acetylmuramoyl-L-alanine amidase BF29_896 PF07690 Major Facilitator Superfamily BF29_898 PF01047 MarR family BF29_899 PF02580 D-Tyr-tRNA(Tyr) deacylase BF29_9 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BF29_9 PF07992 Pyridine nucleotide-disulphide oxidoreductase BF29_90 PF00156 Phosphoribosyl transferase domain BF29_900 PF02824 TGS domain BF29_900 PF13291 ACT domain BF29_900 PF04607 Region found in RelA / SpoT proteins BF29_901 PF00156 Phosphoribosyl transferase domain BF29_902 PF01368 DHH family BF29_902 PF02272 DHHA1 domain BF29_902 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BF29_902 PF17768 RecJ OB domain BF29_903 PF07549 SecD/SecF GG Motif BF29_903 PF02355 Protein export membrane protein BF29_905 PF01943 Polysaccharide biosynthesis protein BF29_905 PF14667 Polysaccharide biosynthesis C-terminal domain BF29_906 PF04239 Protein of unknown function (DUF421) BF29_908 PF02699 Preprotein translocase subunit BF29_909 PF01702 Queuine tRNA-ribosyltransferase BF29_910 PF02547 Queuosine biosynthesis protein BF29_911 PF11146 Protein of unknown function (DUF2905) BF29_912 PF05491 RuvB C-terminal winged helix domain BF29_912 PF05496 Holliday junction DNA helicase RuvB P-loop domain BF29_912 PF17864 RuvB AAA lid domain BF29_913 PF07499 RuvA, C-terminal domain BF29_913 PF01330 RuvA N terminal domain BF29_914 PF01709 Transcriptional regulator BF29_916 PF01476 LysM domain BF29_917 PF02829 3H domain BF29_917 PF08279 HTH domain BF29_918 PF01842 ACT domain BF29_918 PF00800 Prephenate dehydratase BF29_919 PF01842 ACT domain BF29_920 PF01926 50S ribosome-binding GTPase BF29_920 PF01018 GTP1/OBG BF29_920 PF09269 Domain of unknown function (DUF1967) BF29_921 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BF29_921 PF14682 Sporulation initiation phospho-transferase B, C-terminal BF29_922 PF01016 Ribosomal L27 protein BF29_923 PF04327 Cysteine protease Prp BF29_924 PF00829 Ribosomal prokaryotic L21 protein BF29_925 PF10150 Ribonuclease E/G family BF29_925 PF00575 S1 RNA binding domain BF29_926 PF02163 Peptidase family M50 BF29_928 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BF29_929 PF03775 Septum formation inhibitor MinC, C-terminal domain BF29_931 PF04085 rod shape-determining protein MreC BF29_935 PF04002 RadC-like JAB domain BF29_937 PF01478 Type IV leader peptidase family BF29_937 PF06750 Bacterial Peptidase A24 N-terminal domain BF29_94 PF00596 Class II Aldolase and Adducin N-terminal domain BF29_942 PF00482 Type II secretion system (T2SS), protein F BF29_943 PF00437 Type II/IV secretion system protein BF29_944 PF00437 Type II/IV secretion system protein BF29_95 PF02142 MGS-like domain BF29_952 PF08245 Mur ligase middle domain BF29_952 PF02875 Mur ligase family, glutamate ligase domain BF29_953 PF00133 tRNA synthetases class I (I, L, M and V) BF29_953 PF08264 Anticodon-binding domain of tRNA BF29_953 PF10458 Valyl tRNA synthetase tRNA binding arm BF29_956 PF01476 LysM domain BF29_956 PF01476 LysM domain BF29_957 PF00202 Aminotransferase class-III BF29_958 PF00490 Delta-aminolevulinic acid dehydratase BF29_960 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BF29_960 PF03900 Porphobilinogen deaminase, C-terminal domain BF29_961 PF01578 Cytochrome C assembly protein BF29_962 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BF29_962 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BF29_962 PF01488 Shikimate / quinate 5-dehydrogenase BF29_964 PF01926 50S ribosome-binding GTPase BF29_965 PF02190 ATP-dependent protease La (LON) substrate-binding domain BF29_965 PF05362 Lon protease (S16) C-terminal proteolytic domain BF29_965 PF00004 ATPase family associated with various cellular activities (AAA) BF29_966 PF00004 ATPase family associated with various cellular activities (AAA) BF29_966 PF05362 Lon protease (S16) C-terminal proteolytic domain BF29_967 PF07724 AAA domain (Cdc48 subfamily) BF29_967 PF06689 ClpX C4-type zinc finger BF29_967 PF10431 C-terminal, D2-small domain, of ClpB protein BF29_968 PF05697 Bacterial trigger factor protein (TF) BF29_968 PF05698 Bacterial trigger factor protein (TF) C-terminus BF29_968 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BF29_97 PF01812 5-formyltetrahydrofolate cyclo-ligase family BF29_970 PF10710 Protein of unknown function (DUF2512) BF29_973 PF12850 Calcineurin-like phosphoesterase superfamily domain BF29_974 PF01725 Ham1 family BF29_975 PF10646 Sporulation and spore germination BF29_976 PF01177 Asp/Glu/Hydantoin racemase BF29_978 PF01047 MarR family BF29_98 PF07690 Major Facilitator Superfamily BF29_981 PF13276 HTH-like domain BF29_981 PF13333 Integrase core domain BF29_981 PF00665 Integrase core domain BF29_982 PF01527 Transposase BF29_985 PF00196 Bacterial regulatory proteins, luxR family BF29_986 PF03061 Thioesterase superfamily BF29_987 PF13183 4Fe-4S dicluster domain BF29_987 PF13085 2Fe-2S iron-sulfur cluster binding domain BF29_988 PF00890 FAD binding domain BF29_988 PF02910 Fumarate reductase flavoprotein C-term BF29_989 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BF29_99 PF07690 Major Facilitator Superfamily BF29_990 PF10702 Protein of unknown function (DUF2507) BF29_991 PF00696 Amino acid kinase family BF29_991 PF13840 ACT domain BF29_992 PF01541 GIY-YIG catalytic domain BF29_992 PF02151 UvrB/uvrC motif BF29_992 PF08459 UvrC Helix-hairpin-helix N-terminal BF29_993 PF00085 Thioredoxin BF29_994 PF00766 Electron transfer flavoprotein FAD-binding domain BF29_994 PF01012 Electron transfer flavoprotein domain BF29_995 PF01012 Electron transfer flavoprotein domain BF29_996 PF00378 Enoyl-CoA hydratase/isomerase BF29_997 PF00440 Bacterial regulatory proteins, tetR family BF29_997 PF08359 YsiA-like protein, C-terminal region BF29_998 PF13193 AMP-binding enzyme C-terminal domain BF29_998 PF00501 AMP-binding enzyme BF29_999 PF01713 Smr domain BF29_999 PF00488 MutS domain V