BF29_1000 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF29_1000 SM00481 DNA polymerase alpha chain like domain BF29_1000 SM00483 DNA polymerase X family BF29_1004 SM00422 helix_turn_helix, mercury resistance BF29_1006 SM00873 B3/4 domain BF29_1006 SM00874 tRNA synthetase B5 domain BF29_1006 SM00896 Ferredoxin-fold anticodon binding domain BF29_1008 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF29_1027 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF29_1029 SM00382 ATPases associated with a variety of cellular activities BF29_1033 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF29_1036 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF29_1036 SM01232 BF29_1036 BF29_1037 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF29_1037 SM00474 3'-5' exonuclease BF29_1037 SM00475 5'-3' exonuclease BF29_1037 SM00482 DNA polymerase A domain BF29_1040 SM01329 BF29_1040 BF29_1048 SM00919 Malic enzyme, NAD binding domain BF29_1048 SM01274 BF29_1048 BF29_1049 SM00481 DNA polymerase alpha chain like domain BF29_105 SM00831 Cation transporter/ATPase, N-terminus BF29_1054 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_1055 SM00849 Metallo-beta-lactamase superfamily BF29_1057 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF29_1057 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF29_1069 SM00981 BF29_1069 BF29_1073 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF29_1074 SM00267 diguanylate cyclase BF29_1075 SM00363 S4 RNA-binding domain BF29_1075 SM01390 BF29_1075 BF29_108 SM00072 Guanylate kinase homologues. BF29_1080 SM00091 PAS domain BF29_1080 SM00382 ATPases associated with a variety of cellular activities BF29_1081 SM00363 S4 RNA-binding domain BF29_1083 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF29_1083 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF29_109 SM01409 BF29_109 BF29_1090 SM00852 Probable molybdopterin binding domain BF29_1092 SM00852 Probable molybdopterin binding domain BF29_1093 SM00729 Elongator protein 3, MiaB family, Radical SAM BF29_1094 SM00382 ATPases associated with a variety of cellular activities BF29_1099 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_1101 SM00354 helix_turn _helix lactose operon repressor BF29_1102 SM00830 Chorismate mutase type II BF29_1106 SM00382 ATPases associated with a variety of cellular activities BF29_1106 SM00843 BF29_1106 BF29_111 SM00487 DEAD-like helicases superfamily BF29_111 SM00490 helicase superfamily c-terminal domain BF29_1111 SM00331 Sigma factor PP2C-like phosphatases BF29_1111 SM00448 cheY-homologous receiver domain BF29_1112 SM00138 Methyltransferase, chemotaxis proteins BF29_1113 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF29_1113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_1113 SM00387 Histidine kinase-like ATPases BF29_1113 SM00388 His Kinase A (phosphoacceptor) domain BF29_1113 SM00448 cheY-homologous receiver domain BF29_1115 SM00849 Metallo-beta-lactamase superfamily BF29_1126 SM00420 helix_turn_helix, Deoxyribose operon repressor BF29_1149 SM00382 ATPases associated with a variety of cellular activities BF29_115 SM00331 Sigma factor PP2C-like phosphatases BF29_115 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF29_1154 SM01234 BF29_1154 BF29_1158 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF29_116 SM00220 Serine/Threonine protein kinases, catalytic domain BF29_116 SM00740 BF29_116 BF29_1189 SM00530 Helix-turn-helix XRE-family like proteins BF29_119 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF29_1200 SM00344 helix_turn_helix ASNC type BF29_1211 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_1211 SM00387 Histidine kinase-like ATPases BF29_1211 SM00388 His Kinase A (phosphoacceptor) domain BF29_1212 SM00448 cheY-homologous receiver domain BF29_1212 SM00862 Transcriptional regulatory protein, C terminal BF29_1222 SM00450 Rhodanese Homology Domain BF29_1224 SM00318 Staphylococcal nuclease homologues BF29_1224 SM00894 Excalibur calcium-binding domain BF29_123 SM01120 BF29_123 BF29_123 SM01121 BF29_123 BF29_1242 SM00871 Bacterial transcription activator, effector binding domain BF29_1243 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_1244 SM00530 Helix-turn-helix XRE-family like proteins BF29_1254 SM00382 ATPases associated with a variety of cellular activities BF29_126 SM00487 DEAD-like helicases superfamily BF29_126 SM00490 helicase superfamily c-terminal domain BF29_129 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF29_1291 SM00729 Elongator protein 3, MiaB family, Radical SAM BF29_130 SM00822 BF29_130 BF29_1300 SM00382 ATPases associated with a variety of cellular activities BF29_1319 SM00052 Putative diguanylate phosphodiesterase BF29_132 SM00358 Double-stranded RNA binding motif BF29_132 SM00535 Ribonuclease III family BF29_1320 SM01060 BF29_1320 BF29_1321 SM00014 Acid phosphatase homologues BF29_1329 SM00641 Glycosyl hydrolases family 25 BF29_133 SM00968 SMC proteins Flexible Hinge Domain BF29_1330 SM00729 Elongator protein 3, MiaB family, Radical SAM BF29_1330 SM00876 Biotin and Thiamin Synthesis associated domain BF29_1333 SM00822 BF29_1333 BF29_1336 SM00858 BF29_1336 BF29_134 SM00382 ATPases associated with a variety of cellular activities BF29_134 SM00962 SRP54-type protein, GTPase domain BF29_134 SM00963 SRP54-type protein, helical bundle domain BF29_1340 SM00346 helix_turn_helix isocitrate lyase regulation BF29_1341 SM00860 SMI1 / KNR4 family BF29_1343 SM00382 ATPases associated with a variety of cellular activities BF29_1349 SM00382 ATPases associated with a variety of cellular activities BF29_1353 SM00382 ATPases associated with a variety of cellular activities BF29_1358 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_1358 SM00357 Cold shock protein domain BF29_1358 SM00955 BF29_1358 BF29_136 SM00382 ATPases associated with a variety of cellular activities BF29_136 SM00962 SRP54-type protein, GTPase domain BF29_136 SM00963 SRP54-type protein, helical bundle domain BF29_1361 SM01192 BF29_1361 BF29_1361 SM01193 BF29_1361 BF29_1366 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF29_1375 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF29_1375 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF29_1381 SM00382 ATPases associated with a variety of cellular activities BF29_1384 SM00382 ATPases associated with a variety of cellular activities BF29_1403 SM00763 PrkA AAA domain BF29_1406 SM00567 E-Z type HEAT repeats BF29_1408 SM01131 BF29_1408 BF29_1410 SM00062 Bacterial periplasmic substrate-binding proteins BF29_1410 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF29_1418 SM00729 Elongator protein 3, MiaB family, Radical SAM BF29_1422 SM00382 ATPases associated with a variety of cellular activities BF29_1429 SM00829 Enoylreductase BF29_1456 SM00419 helix_turn_helix, cAMP Regulatory protein BF29_1470 SM00382 ATPases associated with a variety of cellular activities BF29_1480 SM00478 endonuclease III BF29_1480 SM00525 BF29_1480 BF29_149 SM00881 CoA binding domain BF29_1497 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF29_1497 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_1506 SM01329 BF29_1506 BF29_1507 SM00917 LeuA allosteric (dimerisation) domain BF29_1519 SM00448 cheY-homologous receiver domain BF29_1519 SM00850 LytTr DNA-binding domain BF29_1520 SM00387 Histidine kinase-like ATPases BF29_1521 SM00870 BF29_1521 BF29_153 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF29_153 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF29_153 SM00493 BF29_153 BF29_1532 SM00530 Helix-turn-helix XRE-family like proteins BF29_1548 SM00347 helix_turn_helix multiple antibiotic resistance protein BF29_1550 SM00478 endonuclease III BF29_156 SM00382 ATPases associated with a variety of cellular activities BF29_156 SM01086 C-terminal, D2-small domain, of ClpB protein BF29_1570 SM00244 prohibitin homologues BF29_1576 SM00947 Carbonic anhydrase BF29_1580 SM00421 helix_turn_helix, Lux Regulon BF29_1588 SM00855 Phosphoglycerate mutase family BF29_1589 SM00530 Helix-turn-helix XRE-family like proteins BF29_1614 SM00487 DEAD-like helicases superfamily BF29_1614 SM00490 helicase superfamily c-terminal domain BF29_1615 SM00487 DEAD-like helicases superfamily BF29_1615 SM00490 helicase superfamily c-terminal domain BF29_1624 SM00420 helix_turn_helix, Deoxyribose operon repressor BF29_1624 SM01134 BF29_1624 BF29_1637 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_1637 SM00895 BF29_1637 BF29_164 SM00382 ATPases associated with a variety of cellular activities BF29_1642 SM01120 BF29_1642 BF29_1649 SM00988 UreE urease accessory protein, N-terminal domain BF29_1656 SM00382 ATPases associated with a variety of cellular activities BF29_1675 SM00382 ATPases associated with a variety of cellular activities BF29_1679 SM00487 DEAD-like helicases superfamily BF29_1679 SM00490 helicase superfamily c-terminal domain BF29_1684 SM00382 ATPases associated with a variety of cellular activities BF29_1695 SM00487 DEAD-like helicases superfamily BF29_1711 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF29_1735 SM00825 Beta-ketoacyl synthase BF29_1736 SM00357 Cold shock protein domain BF29_1738 SM01321 BF29_1738 BF29_174 SM00448 cheY-homologous receiver domain BF29_1742 SM00382 ATPases associated with a variety of cellular activities BF29_1743 SM00382 ATPases associated with a variety of cellular activities BF29_1744 SM00347 helix_turn_helix multiple antibiotic resistance protein BF29_1745 SM00257 Lysin motif BF29_1755 SM00382 ATPases associated with a variety of cellular activities BF29_1758 SM00062 Bacterial periplasmic substrate-binding proteins BF29_1759 SM01240 BF29_1759 BF29_1762 SM01133 BF29_1762 BF29_1763 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF29_1773 SM00797 Allophanate hydrolase subunit 2 BF29_1774 SM00796 Allophanate hydrolase subunit 1 BF29_1777 SM00382 ATPases associated with a variety of cellular activities BF29_1779 SM00062 Bacterial periplasmic substrate-binding proteins BF29_1779 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF29_1781 SM00387 Histidine kinase-like ATPases BF29_1788 SM00829 Enoylreductase BF29_1798 SM00382 ATPases associated with a variety of cellular activities BF29_18 SM00838 Elongation factor G C-terminus BF29_181 SM00962 SRP54-type protein, GTPase domain BF29_1818 SM00382 ATPases associated with a variety of cellular activities BF29_1834 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF29_1838 SM00845 GatB domain BF29_184 SM00073 Histidine Phosphotransfer domain BF29_184 SM00260 Two component signalling adaptor domain BF29_184 SM00387 Histidine kinase-like ATPases BF29_184 SM01231 BF29_184 BF29_1844 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF29_1844 SM00292 breast cancer carboxy-terminal domain BF29_1844 SM00532 Ligase N family BF29_1846 SM00507 HNH nucleases BF29_185 SM00260 Two component signalling adaptor domain BF29_1853 SM01209 BF29_1853 BF29_1853 SM01210 BF29_1853 BF29_1855 SM00798 AICARFT/IMPCHase bienzyme BF29_1855 SM00851 MGS-like domain BF29_1860 SM01211 BF29_1860 BF29_1863 SM00998 Adenylosuccinate lyase C-terminus BF29_1865 SM01001 AIR carboxylase BF29_1882 SM01061 CAT RNA binding domain BF29_1885 SM00382 ATPases associated with a variety of cellular activities BF29_1901 SM00382 ATPases associated with a variety of cellular activities BF29_1902 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_1910 SM00382 ATPases associated with a variety of cellular activities BF29_1915 SM00419 helix_turn_helix, cAMP Regulatory protein BF29_1917 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_1929 SM00382 ATPases associated with a variety of cellular activities BF29_1937 SM00530 Helix-turn-helix XRE-family like proteins BF29_1945 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF29_1950 SM00883 Chaperonin 10 Kd subunit BF29_1955 SM00881 CoA binding domain BF29_1957 SM00382 ATPases associated with a variety of cellular activities BF29_197 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF29_1982 SM00731 SprT homologues. BF29_1983 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_1983 SM00732 Likely ribonuclease with RNase H fold. BF29_1984 SM00331 Sigma factor PP2C-like phosphatases BF29_1988 SM00331 Sigma factor PP2C-like phosphatases BF29_1989 SM00387 Histidine kinase-like ATPases BF29_199 SM00479 BF29_199 BF29_199 SM00481 DNA polymerase alpha chain like domain BF29_1994 SM01005 Alanine racemase, C-terminal domain BF29_1999 SM01321 BF29_1999 BF29_20 SM00670 Large family of predicted nucleotide-binding domains BF29_2000 SM00487 DEAD-like helicases superfamily BF29_2000 SM00490 helicase superfamily c-terminal domain BF29_2003 SM00354 helix_turn _helix lactose operon repressor BF29_2004 SM00642 Alpha-amylase domain BF29_2005 SM00642 Alpha-amylase domain BF29_201 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_201 SM00322 K homology RNA-binding domain BF29_2011 SM00642 Alpha-amylase domain BF29_2017 SM01091 Transporter associated domain BF29_2018 SM00422 helix_turn_helix, mercury resistance BF29_2019 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_2019 SM01091 Transporter associated domain BF29_2023 SM00487 DEAD-like helicases superfamily BF29_2023 SM00490 helicase superfamily c-terminal domain BF29_2040 SM00382 ATPases associated with a variety of cellular activities BF29_2053 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF29_2053 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_2054 SM00226 Low molecular weight phosphatase family BF29_2069 SM00937 BF29_2069 BF29_2073 SM00357 Cold shock protein domain BF29_2073 SM00382 ATPases associated with a variety of cellular activities BF29_2073 SM00959 Rho termination factor, N-terminal domain BF29_2079 SM00448 cheY-homologous receiver domain BF29_208 SM00904 Riboflavin kinase BF29_2085 SM00382 ATPases associated with a variety of cellular activities BF29_2086 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_209 SM01387 BF29_209 BF29_2097 SM00155 Phospholipase D. Active site motifs. BF29_2098 SM00836 DALR anticodon binding domain BF29_2098 SM01016 Arginyl tRNA synthetase N terminal dom BF29_210 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_210 SM00322 K homology RNA-binding domain BF29_2106 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_2119 SM00986 Uracil DNA glycosylase superfamily BF29_2119 SM00987 UreE urease accessory protein, C-terminal domain BF29_2121 SM00530 Helix-turn-helix XRE-family like proteins BF29_2125 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF29_2133 SM00341 Helicase and RNase D C-terminal BF29_2133 SM00487 DEAD-like helicases superfamily BF29_2133 SM00490 helicase superfamily c-terminal domain BF29_2133 SM00956 BF29_2133 BF29_2134 SM00098 Alkaline phosphatase homologues BF29_2138 SM00387 Histidine kinase-like ATPases BF29_2138 SM00388 His Kinase A (phosphoacceptor) domain BF29_216 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF29_2161 SM00855 Phosphoglycerate mutase family BF29_2168 SM00382 ATPases associated with a variety of cellular activities BF29_2168 SM00930 BF29_2168 BF29_2169 SM00382 ATPases associated with a variety of cellular activities BF29_218 SM01130 BF29_218 BF29_2185 SM00382 ATPases associated with a variety of cellular activities BF29_219 SM00849 Metallo-beta-lactamase superfamily BF29_2195 SM00382 ATPases associated with a variety of cellular activities BF29_2200 SM00642 Alpha-amylase domain BF29_2208 SM00062 Bacterial periplasmic substrate-binding proteins BF29_2208 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF29_2209 SM00382 ATPases associated with a variety of cellular activities BF29_2218 SM00855 Phosphoglycerate mutase family BF29_2221 SM00382 ATPases associated with a variety of cellular activities BF29_2226 SM00382 ATPases associated with a variety of cellular activities BF29_223 SM00382 ATPases associated with a variety of cellular activities BF29_223 SM00843 BF29_223 BF29_2235 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF29_2236 SM00849 Metallo-beta-lactamase superfamily BF29_2239 SM00091 PAS domain BF29_2239 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_2239 SM00387 Histidine kinase-like ATPases BF29_2239 SM00388 His Kinase A (phosphoacceptor) domain BF29_2240 SM00448 cheY-homologous receiver domain BF29_2240 SM00862 Transcriptional regulatory protein, C terminal BF29_2244 SM00788 Adenylosuccinate synthetase BF29_2245 SM00382 ATPases associated with a variety of cellular activities BF29_2247 SM00267 diguanylate cyclase BF29_225 SM00382 ATPases associated with a variety of cellular activities BF29_2261 SM00470 ParB-like nuclease domain BF29_2264 SM00470 ParB-like nuclease domain BF29_2266 SM01228 BF29_2266 BF29_2268 SM00393 Putative single-stranded nucleic acids-binding domain BF29_2268 SM01245 BF29_2268 BF29_2271 SM00382 ATPases associated with a variety of cellular activities BF29_2271 SM00760 Bacterial dnaA protein helix-turn-helix domain BF29_2272 SM00480 DNA polymerase III beta subunit BF29_2278 SM00387 Histidine kinase-like ATPases BF29_2278 SM00433 TopoisomeraseII BF29_2279 SM00434 DNA Topoisomerase IV BF29_2280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_2299 SM00966 SpoVT / AbrB like domain BF29_230 SM00822 BF29_230 BF29_2302 SM00493 BF29_2302 BF29_2303 SM00650 Ribosomal RNA adenine dimethylases BF29_2313 SM01400 BF29_2313 BF29_2317 SM00487 DEAD-like helicases superfamily BF29_2317 SM00490 helicase superfamily c-terminal domain BF29_2317 SM00982 BF29_2317 BF29_2317 SM01058 CarD-like/TRCF domain BF29_2318 SM00966 SpoVT / AbrB like domain BF29_2321 SM00363 S4 RNA-binding domain BF29_2325 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_2327 SM00331 Sigma factor PP2C-like phosphatases BF29_2327 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF29_2329 SM00220 Serine/Threonine protein kinases, catalytic domain BF29_233 SM00530 Helix-turn-helix XRE-family like proteins BF29_2330 SM00977 TilS substrate C-terminal domain BF29_2332 SM00382 ATPases associated with a variety of cellular activities BF29_2337 SM00905 Dihydroneopterin aldolase BF29_235 SM00852 Probable molybdopterin binding domain BF29_236 SM00382 ATPases associated with a variety of cellular activities BF29_2360 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_2360 SM01240 BF29_2360 BF29_2361 SM00936 Penicillin-binding protein 5, C-terminal domain BF29_2369 SM00257 Lysin motif BF29_237 SM00322 K homology RNA-binding domain BF29_237 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_2372 SM00382 ATPases associated with a variety of cellular activities BF29_2374 SM00493 BF29_2374 BF29_2387 SM00382 ATPases associated with a variety of cellular activities BF29_2387 SM01086 C-terminal, D2-small domain, of ClpB protein BF29_2388 SM00382 ATPases associated with a variety of cellular activities BF29_2389 SM00670 Large family of predicted nucleotide-binding domains BF29_2394 SM00840 BF29_2394 BF29_2395 SM00535 Ribonuclease III family BF29_2396 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF29_2401 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF29_2401 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF29_2402 SM00649 Ribosomal protein L11/L12 BF29_2409 SM00663 RNA polymerase I subunit A N-terminus BF29_2413 SM00838 Elongation factor G C-terminus BF29_2413 SM00889 Elongation factor G, domain IV BF29_2415 SM01403 BF29_2415 BF29_2419 SM01382 BF29_2419 BF29_2419 SM01383 BF29_2419 BF29_2422 SM00322 K homology RNA-binding domain BF29_2426 SM01374 BF29_2426 BF29_2427 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF29_243 SM00729 Elongator protein 3, MiaB family, Radical SAM BF29_2438 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_2441 SM00662 RNA polymerases D BF29_2443 SM00382 ATPases associated with a variety of cellular activities BF29_2444 SM00382 ATPases associated with a variety of cellular activities BF29_2455 SM00646 BF29_2455 BF29_2459 SM01251 BF29_2459 BF29_246 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF29_246 SM00534 ATPase domain of DNA mismatch repair MUTS family BF29_2461 SM00342 helix_turn_helix, arabinose operon control protein BF29_2465 SM00382 ATPases associated with a variety of cellular activities BF29_247 SM00853 MutL C terminal dimerisation domain BF29_247 SM01340 BF29_247 BF29_2471 SM00382 ATPases associated with a variety of cellular activities BF29_2472 SM00382 ATPases associated with a variety of cellular activities BF29_248 SM00894 Excalibur calcium-binding domain BF29_2488 SM00318 Staphylococcal nuclease homologues BF29_2488 SM00894 Excalibur calcium-binding domain BF29_2491 SM00530 Helix-turn-helix XRE-family like proteins BF29_2492 SM00530 Helix-turn-helix XRE-family like proteins BF29_2493 SM01040 BRO family, N-terminal domain BF29_254 SM00382 ATPases associated with a variety of cellular activities BF29_2548 SM00507 HNH nucleases BF29_2556 SM00257 Lysin motif BF29_2562 SM00849 Metallo-beta-lactamase superfamily BF29_2564 SM00318 Staphylococcal nuclease homologues BF29_2564 SM00894 Excalibur calcium-binding domain BF29_2567 SM00530 Helix-turn-helix XRE-family like proteins BF29_2568 SM00530 Helix-turn-helix XRE-family like proteins BF29_2569 SM01040 BRO family, N-terminal domain BF29_257 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF29_257 SM00475 5'-3' exonuclease BF29_260 SM00357 Cold shock protein domain BF29_261 SM00529 Helix-turn-helix diphteria tox regulatory element BF29_2624 SM00507 HNH nucleases BF29_2632 SM00257 Lysin motif BF29_2638 SM00849 Metallo-beta-lactamase superfamily BF29_264 SM00382 ATPases associated with a variety of cellular activities BF29_265 SM00567 E-Z type HEAT repeats BF29_265 SM00932 Scaffold protein Nfu/NifU N terminal BF29_2653 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF29_2670 SM00382 ATPases associated with a variety of cellular activities BF29_2674 SM00642 Alpha-amylase domain BF29_2675 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_2675 SM00866 BF29_2675 BF29_2678 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_2678 SM00895 BF29_2678 BF29_2679 SM01350 BF29_2679 BF29_2681 SM00465 GIY-YIG type nucleases (URI domain) BF29_2682 SM00100 Cyclic nucleotide-monophosphate binding domain BF29_2682 SM00419 helix_turn_helix, cAMP Regulatory protein BF29_2690 SM01207 BF29_2690 BF29_2700 SM00382 ATPases associated with a variety of cellular activities BF29_2707 SM00822 BF29_2707 BF29_2717 SM00382 ATPases associated with a variety of cellular activities BF29_2733 SM00710 Parallel beta-helix repeats BF29_2767 SM00354 helix_turn _helix lactose operon repressor BF29_277 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF29_277 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_2779 SM00530 Helix-turn-helix XRE-family like proteins BF29_2780 SM00382 ATPases associated with a variety of cellular activities BF29_2792 SM00387 Histidine kinase-like ATPases BF29_2793 SM00448 cheY-homologous receiver domain BF29_2809 SM00100 Cyclic nucleotide-monophosphate binding domain BF29_2809 SM00419 helix_turn_helix, cAMP Regulatory protein BF29_2814 SM00867 YceI-like domain BF29_2818 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_282 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF29_282 SM00245 tail specific protease BF29_2825 SM00382 ATPases associated with a variety of cellular activities BF29_2827 SM00062 Bacterial periplasmic substrate-binding proteins BF29_2827 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF29_283 SM00347 helix_turn_helix multiple antibiotic resistance protein BF29_2830 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_2839 SM01018 B12 binding domain BF29_2865 SM00530 Helix-turn-helix XRE-family like proteins BF29_2876 SM00047 Lysozyme subfamily 2 BF29_2876 SM00287 Bacterial SH3 domain homologues BF29_2884 SM00642 Alpha-amylase domain BF29_2886 SM00910 BF29_2886 BF29_2892 SM00849 Metallo-beta-lactamase superfamily BF29_2894 SM00487 DEAD-like helicases superfamily BF29_290 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF29_291 SM00014 Acid phosphatase homologues BF29_2913 SM00829 Enoylreductase BF29_2928 SM00347 helix_turn_helix multiple antibiotic resistance protein BF29_2930 SM00354 helix_turn _helix lactose operon repressor BF29_2937 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_2937 SM00382 ATPases associated with a variety of cellular activities BF29_2939 SM01266 BF29_2939 BF29_2945 SM00849 Metallo-beta-lactamase superfamily BF29_2947 SM00382 ATPases associated with a variety of cellular activities BF29_2958 SM00382 ATPases associated with a variety of cellular activities BF29_2964 SM00382 ATPases associated with a variety of cellular activities BF29_297 SM00448 cheY-homologous receiver domain BF29_297 SM00862 Transcriptional regulatory protein, C terminal BF29_2972 SM00849 Metallo-beta-lactamase superfamily BF29_2973 SM00382 ATPases associated with a variety of cellular activities BF29_2977 SM00382 ATPases associated with a variety of cellular activities BF29_298 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_298 SM00387 Histidine kinase-like ATPases BF29_298 SM00388 His Kinase A (phosphoacceptor) domain BF29_2981 SM00062 Bacterial periplasmic substrate-binding proteins BF29_2988 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_2988 SM00895 BF29_2988 BF29_3009 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_301 SM00861 Transketolase, pyrimidine binding domain BF29_3016 SM00342 helix_turn_helix, arabinose operon control protein BF29_3019 SM00829 Enoylreductase BF29_3024 SM00382 ATPases associated with a variety of cellular activities BF29_3035 SM00354 helix_turn _helix lactose operon repressor BF29_3040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_3046 SM00382 ATPases associated with a variety of cellular activities BF29_3060 SM00382 ATPases associated with a variety of cellular activities BF29_3074 SM00487 DEAD-like helicases superfamily BF29_3074 SM00490 helicase superfamily c-terminal domain BF29_308 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF29_308 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF29_308 SM00493 BF29_308 BF29_309 SM00450 Rhodanese Homology Domain BF29_3102 SM00530 Helix-turn-helix XRE-family like proteins BF29_312 SM00849 Metallo-beta-lactamase superfamily BF29_3120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF29_3122 SM00382 ATPases associated with a variety of cellular activities BF29_3125 SM00226 Low molecular weight phosphatase family BF29_313 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_3141 SM00354 helix_turn _helix lactose operon repressor BF29_3155 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF29_3155 SM00866 BF29_3155 BF29_3156 SM00257 Lysin motif BF29_3157 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF29_316 SM00257 Lysin motif BF29_3161 SM00387 Histidine kinase-like ATPases BF29_3162 SM00421 helix_turn_helix, Lux Regulon BF29_3162 SM00448 cheY-homologous receiver domain BF29_3165 SM00487 DEAD-like helicases superfamily BF29_3165 SM00490 helicase superfamily c-terminal domain BF29_318 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF29_318 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF29_318 SM00493 BF29_318 BF29_3188 SM00382 ATPases associated with a variety of cellular activities BF29_3204 SM00957 SecA DEAD-like domain BF29_3204 SM00958 SecA preprotein cross-linking domain BF29_3205 SM00937 BF29_3205 BF29_3208 SM00382 ATPases associated with a variety of cellular activities BF29_3211 SM00155 Phospholipase D. Active site motifs. BF29_3214 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF29_3214 SM00245 tail specific protease BF29_3218 SM00382 ATPases associated with a variety of cellular activities BF29_3223 SM00448 cheY-homologous receiver domain BF29_3223 SM00862 Transcriptional regulatory protein, C terminal BF29_3225 SM00091 PAS domain BF29_3225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_3225 SM00387 Histidine kinase-like ATPases BF29_3225 SM00388 His Kinase A (phosphoacceptor) domain BF29_3230 SM00382 ATPases associated with a variety of cellular activities BF29_3231 SM00382 ATPases associated with a variety of cellular activities BF29_3236 SM00487 DEAD-like helicases superfamily BF29_3236 SM00490 helicase superfamily c-terminal domain BF29_3237 SM00382 ATPases associated with a variety of cellular activities BF29_3261 SM00028 Tetratricopeptide repeats BF29_3275 SM00382 ATPases associated with a variety of cellular activities BF29_3292 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_3298 SM00347 helix_turn_helix multiple antibiotic resistance protein BF29_3302 SM00382 ATPases associated with a variety of cellular activities BF29_3344 SM00382 ATPases associated with a variety of cellular activities BF29_3344 SM01086 C-terminal, D2-small domain, of ClpB protein BF29_3350 SM00825 Beta-ketoacyl synthase BF29_3352 SM00382 ATPases associated with a variety of cellular activities BF29_3353 SM00382 ATPases associated with a variety of cellular activities BF29_3364 SM00382 ATPases associated with a variety of cellular activities BF29_3365 SM00382 ATPases associated with a variety of cellular activities BF29_3374 SM01118 BF29_3374 BF29_3376 SM00954 Region found in RelA / SpoT proteins BF29_3403 SM00382 ATPases associated with a variety of cellular activities BF29_3411 SM00344 helix_turn_helix ASNC type BF29_3414 SM00342 helix_turn_helix, arabinose operon control protein BF29_342 SM00357 Cold shock protein domain BF29_3440 SM00387 Histidine kinase-like ATPases BF29_3440 SM00388 His Kinase A (phosphoacceptor) domain BF29_3447 SM00091 PAS domain BF29_3447 SM00387 Histidine kinase-like ATPases BF29_3447 SM00388 His Kinase A (phosphoacceptor) domain BF29_3451 SM00382 ATPases associated with a variety of cellular activities BF29_3451 SM01086 C-terminal, D2-small domain, of ClpB protein BF29_3461 SM00260 Two component signalling adaptor domain BF29_3461 SM00448 cheY-homologous receiver domain BF29_348 SM00382 ATPases associated with a variety of cellular activities BF29_349 SM00387 Histidine kinase-like ATPases BF29_350 SM00448 cheY-homologous receiver domain BF29_350 SM00862 Transcriptional regulatory protein, C terminal BF29_355 SM00382 ATPases associated with a variety of cellular activities BF29_356 SM00382 ATPases associated with a variety of cellular activities BF29_374 SM01207 BF29_374 BF29_375 SM00881 CoA binding domain BF29_376 SM00387 Histidine kinase-like ATPases BF29_376 SM00433 TopoisomeraseII BF29_377 SM00434 DNA Topoisomerase IV BF29_4 SM00849 Metallo-beta-lactamase superfamily BF29_425 SM00861 Transketolase, pyrimidine binding domain BF29_428 SM00382 ATPases associated with a variety of cellular activities BF29_430 SM00849 Metallo-beta-lactamase superfamily BF29_432 SM00506 Appr-1"-p processing enzyme BF29_440 SM00382 ATPases associated with a variety of cellular activities BF29_45 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF29_465 SM00382 ATPases associated with a variety of cellular activities BF29_466 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF29_468 SM00226 Low molecular weight phosphatase family BF29_472 SM00382 ATPases associated with a variety of cellular activities BF29_483 SM00642 Alpha-amylase domain BF29_493 SM00382 ATPases associated with a variety of cellular activities BF29_499 SM01350 BF29_499 BF29_501 SM00822 BF29_501 BF29_504 SM00450 Rhodanese Homology Domain BF29_510 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF29_516 SM00422 helix_turn_helix, mercury resistance BF29_520 SM00899 BF29_520 BF29_526 SM00851 MGS-like domain BF29_526 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF29_527 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF29_531 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF29_536 SM00357 Cold shock protein domain BF29_540 SM00563 Phosphate acyltransferases BF29_543 SM00448 cheY-homologous receiver domain BF29_547 SM00861 Transketolase, pyrimidine binding domain BF29_549 SM00857 Resolvase, N terminal domain BF29_550 SM00257 Lysin motif BF29_552 SM01230 BF29_552 BF29_553 SM00422 helix_turn_helix, mercury resistance BF29_556 SM00244 prohibitin homologues BF29_56 SM00740 BF29_56 BF29_560 SM00981 BF29_560 BF29_565 SM00487 DEAD-like helicases superfamily BF29_565 SM00490 helicase superfamily c-terminal domain BF29_57 SM00740 BF29_57 BF29_574 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF29_574 SM00478 endonuclease III BF29_574 SM00525 BF29_574 BF29_579 SM00479 BF29_579 BF29_579 SM00487 DEAD-like helicases superfamily BF29_579 SM00491 BF29_579 BF29_598 SM00914 BF29_598 BF29_599 SM00028 Tetratricopeptide repeats BF29_606 SM00138 Methyltransferase, chemotaxis proteins BF29_607 SM00562 BF29_607 BF29_612 SM00411 bacterial (prokaryotic) histone like domain BF29_620 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_627 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF29_636 SM00487 DEAD-like helicases superfamily BF29_636 SM00490 helicase superfamily c-terminal domain BF29_641 SM00257 Lysin motif BF29_642 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF29_642 SM00387 Histidine kinase-like ATPases BF29_642 SM00388 His Kinase A (phosphoacceptor) domain BF29_643 SM00448 cheY-homologous receiver domain BF29_643 SM00862 Transcriptional regulatory protein, C terminal BF29_647 SM00363 S4 RNA-binding domain BF29_65 SM00842 Cell division protein FtsA BF29_66 SM00864 Tubulin/FtsZ family, GTPase domain BF29_66 SM00865 Tubulin/FtsZ family, C-terminal domain BF29_661 SM00387 Histidine kinase-like ATPases BF29_663 SM00936 Penicillin-binding protein 5, C-terminal domain BF29_677 SM00257 Lysin motif BF29_677 SM00636 BF29_677 BF29_682 SM00849 Metallo-beta-lactamase superfamily BF29_685 SM00260 Two component signalling adaptor domain BF29_692 SM00861 Transketolase, pyrimidine binding domain BF29_695 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF29_7 SM00861 Transketolase, pyrimidine binding domain BF29_700 SM00448 cheY-homologous receiver domain BF29_701 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF29_704 SM00363 S4 RNA-binding domain BF29_705 SM00861 Transketolase, pyrimidine binding domain BF29_71 SM00257 Lysin motif BF29_712 SM00878 Biotin carboxylase C-terminal domain BF29_721 SM00382 ATPases associated with a variety of cellular activities BF29_722 SM00841 Elongation factor P, C-terminal BF29_722 SM01185 BF29_722 BF29_734 SM00450 Rhodanese Homology Domain BF29_738 SM00487 DEAD-like helicases superfamily BF29_738 SM00490 helicase superfamily c-terminal domain BF29_748 SM00382 ATPases associated with a variety of cellular activities BF29_751 SM00849 Metallo-beta-lactamase superfamily BF29_76 SM00363 S4 RNA-binding domain BF29_767 SM00382 ATPases associated with a variety of cellular activities BF29_770 SM00518 AP endonuclease family 2 BF29_771 SM00487 DEAD-like helicases superfamily BF29_771 SM00490 helicase superfamily c-terminal domain BF29_779 SM00400 zinc finger BF29_779 SM00493 BF29_779 BF29_781 SM00116 Domain in cystathionine beta-synthase and other proteins. BF29_797 SM00729 Elongator protein 3, MiaB family, Radical SAM BF29_800 SM00271 DnaJ molecular chaperone homology domain BF29_804 SM00729 Elongator protein 3, MiaB family, Radical SAM BF29_805 SM00838 Elongation factor G C-terminus BF29_81 SM00363 S4 RNA-binding domain BF29_811 SM00849 Metallo-beta-lactamase superfamily BF29_813 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF29_817 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_819 SM01103 BF29_819 BF29_85 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF29_851 SM00732 Likely ribonuclease with RNase H fold. BF29_853 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF29_858 SM00382 ATPases associated with a variety of cellular activities BF29_859 SM00028 Tetratricopeptide repeats BF29_86 SM00851 MGS-like domain BF29_86 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF29_866 SM00450 Rhodanese Homology Domain BF29_868 SM00450 Rhodanese Homology Domain BF29_868 SM00849 Metallo-beta-lactamase superfamily BF29_870 SM00450 Rhodanese Homology Domain BF29_871 SM00450 Rhodanese Homology Domain BF29_880 SM00448 cheY-homologous receiver domain BF29_880 SM00862 Transcriptional regulatory protein, C terminal BF29_882 SM00382 ATPases associated with a variety of cellular activities BF29_888 SM00382 ATPases associated with a variety of cellular activities BF29_89 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF29_895 SM00287 Bacterial SH3 domain homologues BF29_895 SM00646 BF29_895 BF29_898 SM00347 helix_turn_helix multiple antibiotic resistance protein BF29_900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF29_900 SM00954 Region found in RelA / SpoT proteins BF29_908 SM01323 BF29_908 BF29_912 SM00382 ATPases associated with a variety of cellular activities BF29_913 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF29_916 SM00257 Lysin motif BF29_921 SM01317 BF29_921 BF29_925 SM00316 Ribosomal protein S1-like RNA-binding domain BF29_943 SM00382 ATPases associated with a variety of cellular activities BF29_944 SM00382 ATPases associated with a variety of cellular activities BF29_945 SM01208 BF29_945 BF29_95 SM00851 MGS-like domain BF29_956 SM00257 Lysin motif BF29_958 SM01004 Delta-aminolevulinic acid dehydratase BF29_965 SM00382 ATPases associated with a variety of cellular activities BF29_965 SM00464 Found in ATP-dependent protease La (LON) BF29_966 SM00382 ATPases associated with a variety of cellular activities BF29_967 SM00382 ATPases associated with a variety of cellular activities BF29_967 SM00994 ClpX C4-type zinc finger BF29_967 SM01086 C-terminal, D2-small domain, of ClpB protein BF29_975 SM00909 Sporulation and spore germination BF29_978 SM00347 helix_turn_helix multiple antibiotic resistance protein BF29_985 SM00421 helix_turn_helix, Lux Regulon BF29_992 SM00465 GIY-YIG type nucleases (URI domain) BF29_994 SM00893 Electron transfer flavoprotein domain BF29_995 SM00893 Electron transfer flavoprotein domain BF29_999 SM00463 Small MutS-related domain BF29_999 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF29_999 SM00534 ATPase domain of DNA mismatch repair MUTS family