locus-tag	class	description
CYJ15_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CYJ15_00010	COG0592	DNA-directed DNA polymerase activity
CYJ15_00015	COG2501	S4 domain
CYJ15_00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CYJ15_00030	COG0187	DNA topoisomerase II activity
CYJ15_00035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CYJ15_00040	COG3437	response regulator, receiver
CYJ15_00075	COG1982	Orn Lys Arg decarboxylase major
CYJ15_00085	COG3870	Protein conserved in bacteria
CYJ15_00090	COG1728	Protein conserved in bacteria
CYJ15_00095	COG0470	DNA polymerase III
CYJ15_00100	COG1774	PSP1 C-terminal conserved region
CYJ15_00105	COG4467	Involved in initiation control of chromosome replication
CYJ15_00110	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CYJ15_00115	COG2827	Endonuclease containing a URI domain
CYJ15_00120	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CYJ15_00125	COG2002	toxin-antitoxin pair type II binding
CYJ15_00135	COG0084	hydrolase, TatD family'
CYJ15_00145	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CYJ15_00160	COG4466	Protein conserved in bacteria
CYJ15_00170	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CYJ15_00175	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CYJ15_00180	COG0251	oxidation-reduction process
CYJ15_00210	COG1136	(ABC) transporter
CYJ15_00220	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CYJ15_00225	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CYJ15_00230	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CYJ15_00235	COG0193	aminoacyl-tRNA hydrolase activity
CYJ15_00245	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CYJ15_00250	COG2002	toxin-antitoxin pair type II binding
CYJ15_00255	COG2244	polysaccharide biosynthetic process
CYJ15_00260	COG3956	TIGRFAM MazG family protein
CYJ15_00265	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CYJ15_00285	COG1098	S1 RNA binding domain
CYJ15_00295	COG2208	phosphoserine phosphatase activity
CYJ15_00300	COG2304	oxidoreductase activity
CYJ15_00305	COG0515	serine threonine protein kinase
CYJ15_00310	COG0037	tRNA processing
CYJ15_00320	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CYJ15_00325	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CYJ15_00330	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CYJ15_00335	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CYJ15_00340	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CYJ15_00345	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CYJ15_00350	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CYJ15_00380	COG0516	GMP reductase activity
CYJ15_00380	COG0517	IMP dehydrogenase activity
CYJ15_00395	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
CYJ15_00405	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CYJ15_00415	COG1428	Deoxynucleoside kinase
CYJ15_00420	COG1428	Deoxynucleoside kinase
CYJ15_00425	COG3858	chitin binding
CYJ15_00425	COG1388	LysM domain
CYJ15_00435	COG0590	tRNA wobble adenosine to inosine editing
CYJ15_00445	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CYJ15_00455	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CYJ15_00545	COG3880	PFAM UvrB UvrC protein
CYJ15_00550	COG3869	Catalyzes the specific phosphorylation of arginine residues in
CYJ15_00555	COG0542	response to heat
CYJ15_00560	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CYJ15_00565	COG4956	integral membrane protein (PIN domain superfamily)
CYJ15_00575	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CYJ15_00580	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CYJ15_00585	COG1045	serine acetyltransferase
CYJ15_00590	COG0215	cysteine-tRNA ligase activity
CYJ15_00600	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CYJ15_00605	COG3688	RNA-binding protein containing a PIN domain
CYJ15_00615	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CYJ15_00620	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CYJ15_00625	COG0250	Participates in transcription elongation, termination and antitermination
CYJ15_00630	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CYJ15_00635	COG0081	regulation of translation
CYJ15_00640	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CYJ15_00650	COG2813	Specifically methylates the guanine in position
CYJ15_00665	COG1358	cellular component organization or biogenesis
CYJ15_00670	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CYJ15_00675	COG0049	tRNA binding
CYJ15_00680	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CYJ15_00690	COG0051	transcription antitermination factor activity, RNA binding
CYJ15_00700	COG0088	Forms part of the polypeptide exit tunnel
CYJ15_00705	COG0089	rRNA binding
CYJ15_00710	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CYJ15_00715	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CYJ15_00720	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CYJ15_00725	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CYJ15_00730	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CYJ15_00735	COG0255	Belongs to the universal ribosomal protein uL29 family
CYJ15_00740	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CYJ15_00745	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CYJ15_00750	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CYJ15_00760	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CYJ15_00765	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CYJ15_00770	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CYJ15_00775	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CYJ15_00780	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CYJ15_00785	COG1841	ribosomal large subunit assembly
CYJ15_00790	COG0200	Binds to the 23S rRNA
CYJ15_00795	COG0201	protein transport
CYJ15_00800	COG0563	adenylate kinase activity
CYJ15_00805	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CYJ15_00810	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CYJ15_00815	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CYJ15_00820	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CYJ15_00825	COG0202	RNA polymerase activity
CYJ15_00830	COG0203	ribosomal protein L17
CYJ15_00835	COG1122	ATPase activity
CYJ15_00840	COG1122	ATPase activity
CYJ15_00845	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CYJ15_00855	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CYJ15_00860	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CYJ15_00875	COG2046	Belongs to the sulfate adenylyltransferase family
CYJ15_00880	COG0529	Catalyzes the synthesis of activated sulfate
CYJ15_00885	COG0833	amino acid
CYJ15_00895	COG0860	N-Acetylmuramoyl-L-alanine amidase
CYJ15_00900	COG0489	protein tyrosine kinase activity
CYJ15_00910	COG2194	sulfuric ester hydrolase activity
CYJ15_00925	COG0726	polysaccharide deacetylase
CYJ15_00935	COG1271	oxidase subunit
CYJ15_00940	COG1294	oxidase, subunit
CYJ15_00950	COG4988	ABC transporter
CYJ15_00955	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CYJ15_00960	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_01035	COG1595	DNA-templated transcription, initiation
CYJ15_01040	COG5662	AntiSigma factor
CYJ15_01045	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CYJ15_01050	COG4856	YbbR-like protein
CYJ15_01055	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CYJ15_01060	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CYJ15_01105	COG2814	Major facilitator Superfamily
CYJ15_01110	COG0583	DNA-binding transcription factor activity
CYJ15_01125	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CYJ15_01135	COG0840	transmembrane signaling receptor activity
CYJ15_01150	COG1695	Transcriptional regulator
CYJ15_01160	COG0840	transmembrane signaling receptor activity
CYJ15_01165	COG0477	Major facilitator Superfamily
CYJ15_01220	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CYJ15_01225	COG2814	Major facilitator Superfamily
CYJ15_01240	COG0519	Catalyzes the synthesis of GMP from XMP
CYJ15_01270	COG0477	Major facilitator Superfamily
CYJ15_01270	COG2814	Major facilitator Superfamily
CYJ15_01335	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CYJ15_01340	COG0210	DNA helicase
CYJ15_01370	COG0069	glutamate synthase activity
CYJ15_01375	COG0789	Transcriptional regulator
CYJ15_01380	COG0789	Transcriptional regulator
CYJ15_01385	COG2814	Major facilitator Superfamily
CYJ15_01405	COG2207	Transcriptional regulator
CYJ15_01405	COG3708	Transcriptional regulator
CYJ15_01415	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CYJ15_01460	COG0681	Belongs to the peptidase S26 family
CYJ15_01470	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CYJ15_01495	COG3425	synthase
CYJ15_01510	COG0183	Belongs to the thiolase family
CYJ15_01535	COG0517	IMP dehydrogenase activity
CYJ15_01535	COG1125	glycine betaine transport
CYJ15_01540	COG1174	glycine betaine transport
CYJ15_01545	COG2190	(PTS) system
CYJ15_01550	COG1263	PTS System
CYJ15_01550	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_01555	COG0366	Alpha amylase catalytic
CYJ15_01560	COG2188	Transcriptional regulator
CYJ15_01570	COG1070	Carbohydrate kinase
CYJ15_01580	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
CYJ15_01590	COG0716	FMN binding
CYJ15_01605	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CYJ15_01615	COG2608	mercury ion transmembrane transporter activity
CYJ15_01620	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CYJ15_01630	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CYJ15_01635	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CYJ15_01640	COG0463	Glycosyl transferase, family 2
CYJ15_01680	COG2076	Multidrug Resistance protein
CYJ15_01685	COG2076	Multidrug Resistance protein
CYJ15_01695	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CYJ15_01700	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CYJ15_01705	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CYJ15_01715	COG1120	ATPase activity
CYJ15_01745	COG0217	transcriptional regulatory protein
CYJ15_01750	COG1366	Belongs to the anti-sigma-factor antagonist family
CYJ15_01760	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_01770	COG1309	transcriptional regulator
CYJ15_01790	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_01805	COG5434	Belongs to the glycosyl hydrolase 28 family
CYJ15_01815	COG0175	sulfate reduction
CYJ15_01840	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CYJ15_01845	COG0371	Dehydrogenase
CYJ15_01850	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_01855	COG0745	RESPONSE REGULATOR receiver
CYJ15_01855	COG3706	GGDEF domain
CYJ15_01865	COG0697	spore germination
CYJ15_01885	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CYJ15_01895	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CYJ15_01920	COG0702	epimerase
CYJ15_01940	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CYJ15_01955	COG3830	Belongs to the UPF0237 family
CYJ15_01960	COG2848	UPF0210 protein
CYJ15_01965	COG1609	Transcriptional regulator
CYJ15_01980	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYJ15_01995	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CYJ15_02000	COG5577	PFAM Coat F domain
CYJ15_02005	COG0667	Aldo Keto reductase
CYJ15_02015	COG1113	amino acid transport
CYJ15_02025	COG3104	oligopeptide transport
CYJ15_02030	COG0833	amino acid
CYJ15_02050	COG3842	ATPase activity
CYJ15_02055	COG1176	ABC-type spermidine putrescine transport system, permease component I
CYJ15_02065	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CYJ15_02115	COG0531	amino acid
CYJ15_02120	COG1556	Lactate utilization protein
CYJ15_02125	COG1139	Iron-sulfur cluster binding protein
CYJ15_02130	COG0247	lactate metabolic process
CYJ15_02140	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CYJ15_02145	COG1454	alcohol dehydrogenase
CYJ15_02155	COG1953	Uracil, thiamine, allantoin
CYJ15_02180	COG0531	amino acid
CYJ15_02185	COG1979	alcohol dehydrogenase
CYJ15_02190	COG0004	ammonium transporteR
CYJ15_02195	COG3290	protein histidine kinase activity
CYJ15_02200	COG4565	transcriptional regulatory protein
CYJ15_02205	COG2851	Citrate transporter
CYJ15_02210	COG0463	Glycosyl transferase, family 2
CYJ15_02215	COG3973	AAA domain
CYJ15_02255	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CYJ15_02265	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CYJ15_02270	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CYJ15_02275	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CYJ15_02280	COG1301	dicarboxylic acid transport
CYJ15_02285	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CYJ15_02315	COG1902	pentaerythritol trinitrate reductase activity
CYJ15_02335	COG0423	glycine-tRNA ligase activity
CYJ15_02345	COG0531	amino acid
CYJ15_02355	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CYJ15_02375	COG0628	permease
CYJ15_02385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYJ15_02390	COG0765	amino acid transport
CYJ15_02395	COG0765	amino acid transport
CYJ15_02410	COG1733	regulation of RNA biosynthetic process
CYJ15_02425	COG0586	Pfam SNARE associated Golgi protein
CYJ15_02430	COG0586	Pfam SNARE associated Golgi protein
CYJ15_02435	COG1316	TRANSCRIPTIONal
CYJ15_02445	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CYJ15_02445	COG0646	methionine synthase
CYJ15_02450	COG0646	methionine synthase
CYJ15_02450	COG1410	methionine synthase
CYJ15_02485	COG3944	biosynthesis protein
CYJ15_02490	COG0489	protein tyrosine kinase activity
CYJ15_02495	COG4464	protein tyrosine phosphatase activity
CYJ15_02500	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CYJ15_02510	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CYJ15_02525	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CYJ15_02530	COG0438	transferase activity, transferring glycosyl groups
CYJ15_02540	COG1216	Glycosyl transferase, family 2
CYJ15_02540	COG1442	glycosyl transferase family 8
CYJ15_02570	COG1070	Carbohydrate kinase
CYJ15_02585	COG1070	Carbohydrate kinase
CYJ15_02595	COG1940	carbohydrate kinase activity
CYJ15_02605	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CYJ15_02625	COG4193	domain, Protein
CYJ15_02645	COG5504	Zn-dependent protease
CYJ15_02650	COG2226	methyltransferase
CYJ15_02705	COG3716	PTS system mannose fructose sorbose family IID component
CYJ15_02710	COG3715	PTS system
CYJ15_02715	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_02720	COG0363	glucosamine-6-phosphate deaminase activity
CYJ15_02725	COG2188	Transcriptional regulator
CYJ15_02730	COG1396	sequence-specific DNA binding
CYJ15_02750	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
CYJ15_02755	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CYJ15_02760	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CYJ15_02760	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CYJ15_02770	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_02770	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYJ15_02775	COG3715	PTS system
CYJ15_02780	COG3716	PTS system mannose fructose sorbose family IID component
CYJ15_02805	COG3414	Phosphotransferase system galactitol-specific IIB component
CYJ15_02810	COG3775	system Galactitol-specific IIC component
CYJ15_02820	COG1105	Belongs to the carbohydrate kinase PfkB family
CYJ15_02825	COG0235	Class ii aldolase
CYJ15_02845	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CYJ15_02855	COG0145	ligase activity
CYJ15_02865	COG2315	Protein conserved in bacteria
CYJ15_02880	COG0658	competence protein
CYJ15_02880	COG2333	competence protein COMEC
CYJ15_02905	COG0531	amino acid
CYJ15_02915	COG1316	TRANSCRIPTIONal
CYJ15_02925	COG4989	oxidoreductase activity
CYJ15_02950	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CYJ15_02955	COG2130	NADP-dependent
CYJ15_02970	COG3711	transcriptional antiterminator
CYJ15_02970	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYJ15_02975	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CYJ15_02980	COG1447	Phosphotransferase system cellobiose-specific component IIA
CYJ15_02990	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CYJ15_02995	COG2211	Major facilitator Superfamily
CYJ15_02995	COG2190	(PTS) system
CYJ15_03000	COG1113	amino acid transport
CYJ15_03015	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CYJ15_03025	COG2814	Major facilitator Superfamily
CYJ15_03030	COG1609	Transcriptional regulator
CYJ15_03045	COG1174	glycine betaine transport
CYJ15_03055	COG1732	Glycine betaine
CYJ15_03060	COG1174	glycine betaine transport
CYJ15_03065	COG1125	glycine betaine transport
CYJ15_03065	COG0517	IMP dehydrogenase activity
CYJ15_03070	COG1510	regulation of RNA biosynthetic process
CYJ15_03075	COG0110	maltose O-acetyltransferase activity
CYJ15_03080	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_03095	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CYJ15_03110	COG4297	protein containing double-stranded beta helix domain
CYJ15_03120	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CYJ15_03140	COG0606	chelatase, subunit chli
CYJ15_03150	COG0371	Dehydrogenase
CYJ15_03155	COG2814	Major facilitator Superfamily
CYJ15_03160	COG1070	Carbohydrate kinase
CYJ15_03165	COG2115	Belongs to the xylose isomerase family
CYJ15_03180	COG0157	Belongs to the NadC ModD family
CYJ15_03185	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CYJ15_03190	COG1104	cysteine desulfurase activity
CYJ15_03200	COG2116	formate transmembrane transporter activity
CYJ15_03230	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_03235	COG2610	gluconate transmembrane transporter activity
CYJ15_03240	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_03250	COG3829	transcription factor binding
CYJ15_03250	COG3290	protein histidine kinase activity
CYJ15_03260	COG1501	Belongs to the glycosyl hydrolase 31 family
CYJ15_03285	COG1309	transcriptional regulator
CYJ15_03310	COG1363	Peptidase, m42
CYJ15_03355	COG2972	Histidine kinase
CYJ15_03375	COG0531	amino acid
CYJ15_03385	COG1620	l-lactate permease
CYJ15_03390	COG2186	Transcriptional regulator
CYJ15_03420	COG0473	3-isopropylmalate dehydrogenase activity
CYJ15_03455	COG1447	Phosphotransferase system cellobiose-specific component IIA
CYJ15_03470	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CYJ15_03470	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CYJ15_03475	COG2723	6-phospho-beta-galactosidase activity
CYJ15_03480	COG3711	transcriptional antiterminator
CYJ15_03480	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYJ15_03485	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CYJ15_03495	COG1131	(ABC) transporter
CYJ15_03505	COG0626	cystathionine gamma-synthase activity
CYJ15_03510	COG0626	cystathionine gamma-synthase activity
CYJ15_03530	COG1653	transport
CYJ15_03535	COG2207	Transcriptional regulator
CYJ15_03550	COG0604	alcohol dehydrogenase
CYJ15_03555	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CYJ15_03560	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CYJ15_03585	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_03590	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CYJ15_03600	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CYJ15_03610	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CYJ15_03615	COG1316	TRANSCRIPTIONal
CYJ15_03625	COG1136	(ABC) transporter
CYJ15_03630	COG0577	efflux transmembrane transporter activity
CYJ15_03630	COG1136	(ABC) transporter
CYJ15_03635	COG0745	RESPONSE REGULATOR receiver
CYJ15_03640	COG5002	protein histidine kinase activity
CYJ15_03650	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CYJ15_03660	COG0039	L-malate dehydrogenase activity
CYJ15_03665	COG1388	LysM domain
CYJ15_03665	COG3584	3D domain protein
CYJ15_03675	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CYJ15_03685	COG0011	TIGRFAM Protein of
CYJ15_03690	COG2706	6-phosphogluconolactonase activity
CYJ15_03700	COG3933	PFAM sigma-54 factor interaction domain-containing protein
CYJ15_03700	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CYJ15_03705	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_03705	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYJ15_03715	COG3715	PTS system
CYJ15_03720	COG3716	PTS system mannose fructose sorbose family IID component
CYJ15_03735	COG2079	MmgE PrpD family protein
CYJ15_03740	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CYJ15_03750	COG0154	amidase activity
CYJ15_03760	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CYJ15_03765	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CYJ15_03770	COG1116	anion transmembrane transporter activity
CYJ15_03775	COG0083	homoserine kinase activity
CYJ15_03780	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CYJ15_03785	COG0460	homoserine dehydrogenase
CYJ15_03790	COG0010	Belongs to the arginase family
CYJ15_03800	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CYJ15_03805	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CYJ15_03815	COG4145	pantothenate transmembrane transporter activity
CYJ15_03830	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_03830	COG1454	alcohol dehydrogenase
CYJ15_03845	COG0791	NLP P60 protein
CYJ15_03845	COG1388	LysM domain
CYJ15_03850	COG0024	Methionine aminopeptidase
CYJ15_03855	COG1268	BioY protein
CYJ15_03865	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_03870	COG1960	acyl-CoA dehydrogenase activity
CYJ15_03875	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_03880	COG2746	aminoglycoside 3-N-acetyltransferase activity
CYJ15_03885	COG2244	polysaccharide biosynthetic process
CYJ15_03890	COG0589	response to stress
CYJ15_03905	COG0535	radical SAM domain protein
CYJ15_03915	COG0457	Tetratricopeptide repeat
CYJ15_03920	COG1063	alcohol dehydrogenase
CYJ15_03935	COG1609	Transcriptional regulator
CYJ15_03945	COG0561	phosphatase activity
CYJ15_03965	COG0656	L-ascorbic acid biosynthetic process
CYJ15_03980	COG0656	L-ascorbic acid biosynthetic process
CYJ15_03985	COG0431	NADPH-dependent FMN reductase
CYJ15_03990	COG0420	3'-5' exonuclease activity
CYJ15_03995	COG4717	serine-type aminopeptidase activity
CYJ15_04000	COG1250	3-hydroxyacyl-CoA dehydrogenase
CYJ15_04005	COG0534	Mate efflux family protein
CYJ15_04025	COG0789	Transcriptional regulator
CYJ15_04030	COG0436	Aminotransferase
CYJ15_04035	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CYJ15_04045	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CYJ15_04055	COG2226	methyltransferase
CYJ15_04080	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CYJ15_04115	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CYJ15_04120	COG1113	amino acid transport
CYJ15_04125	COG2814	Major facilitator Superfamily
CYJ15_04140	COG1033	growth of symbiont in host cell
CYJ15_04140	COG2409	Drug exporters of the RND superfamily
CYJ15_04145	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
CYJ15_04160	COG1960	acyl-CoA dehydrogenase activity
CYJ15_04180	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CYJ15_04185	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
CYJ15_04200	COG1609	Transcriptional regulator
CYJ15_04215	COG2996	Protein conserved in bacteria
CYJ15_04220	COG0346	lactoylglutathione lyase activity
CYJ15_04225	COG1482	cell wall glycoprotein biosynthetic process
CYJ15_04235	COG0477	Major facilitator Superfamily
CYJ15_04240	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CYJ15_04265	COG0768	penicillin binding
CYJ15_04275	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CYJ15_04280	COG1739	Uncharacterized protein family UPF0029
CYJ15_04295	COG0531	amino acid
CYJ15_04300	COG1307	EDD domain protein, DegV family
CYJ15_04305	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
CYJ15_04310	COG1040	competence protein
CYJ15_04320	COG2747	anti-sigma28 factor FlgM
CYJ15_04330	COG4786	Flagellar basal body rod
CYJ15_04330	COG1256	bacterial-type flagellum assembly
CYJ15_04335	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CYJ15_04345	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CYJ15_04365	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CYJ15_04370	COG1285	pathogenesis
CYJ15_04375	COG0647	UMP catabolic process
CYJ15_04385	COG2271	Major facilitator Superfamily
CYJ15_04390	COG1113	amino acid transport
CYJ15_04400	COG1067	ATP-dependent peptidase activity
CYJ15_04410	COG2094	Belongs to the DNA glycosylase MPG family
CYJ15_04425	COG1334	flagellar protein FlaG
CYJ15_04430	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CYJ15_04435	COG1516	flagellar protein fliS
CYJ15_04460	COG0653	protein targeting
CYJ15_04470	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CYJ15_04480	COG2884	Cell division ATP-binding protein ftsE
CYJ15_04485	COG2177	Part of the ABC transporter FtsEX involved in
CYJ15_04490	COG0739	heme binding
CYJ15_04505	COG0460	homoserine dehydrogenase
CYJ15_04515	COG0793	Belongs to the peptidase S41A family
CYJ15_04515	COG3409	Peptidoglycan-binding domain 1 protein
CYJ15_04525	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CYJ15_04530	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CYJ15_04535	COG4605	iron ion homeostasis
CYJ15_04540	COG4604	ABC transporter, ATP-binding protein
CYJ15_04545	COG4607	ABC-type enterochelin transport system periplasmic component
CYJ15_04560	COG0745	RESPONSE REGULATOR receiver
CYJ15_04565	COG5002	protein histidine kinase activity
CYJ15_04575	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CYJ15_04580	COG0573	inorganic phosphate transmembrane transporter activity
CYJ15_04585	COG0581	inorganic phosphate transmembrane transporter activity
CYJ15_04600	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CYJ15_04645	COG0556	nucleotide-excision repair
CYJ15_04650	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CYJ15_04655	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CYJ15_04665	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CYJ15_04670	COG1682	transport, permease protein
CYJ15_04675	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CYJ15_04675	COG0463	Glycosyl transferase, family 2
CYJ15_04680	COG3595	metallopeptidase activity
CYJ15_04695	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CYJ15_04700	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CYJ15_04705	COG0546	phosphoglycolate phosphatase activity
CYJ15_04710	COG0110	maltose O-acetyltransferase activity
CYJ15_04715	COG0457	Tetratricopeptide repeat
CYJ15_04720	COG0492	ferredoxin-NADP+ reductase activity
CYJ15_04735	COG1051	belongs to the nudix hydrolase family
CYJ15_04740	COG1660	Displays ATPase and GTPase activities
CYJ15_04745	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CYJ15_04755	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYJ15_04790	COG3842	ATPase activity
CYJ15_04795	COG2508	Transcriptional regulator
CYJ15_04805	COG0189	ligase activity
CYJ15_04810	COG0189	ligase activity
CYJ15_04825	COG4399	Belongs to the UPF0754 family
CYJ15_04835	COG0561	phosphatase activity
CYJ15_04840	COG1024	Enoyl-CoA hydratase
CYJ15_04850	COG0861	Integral membrane protein TerC family
CYJ15_04855	COG0701	Predicted permease
CYJ15_04860	COG3689	TIGRFAM TIGR03943 family protein
CYJ15_04865	COG0420	3'-5' exonuclease activity
CYJ15_04870	COG4717	serine-type aminopeptidase activity
CYJ15_04875	COG3481	metal-dependent phosphohydrolase, HD sub domain
CYJ15_04885	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CYJ15_04900	COG1846	Transcriptional regulator
CYJ15_04920	COG0537	adenosine 5'-monophosphoramidase activity
CYJ15_04925	COG1131	(ABC) transporter
CYJ15_04930	COG4473	ABC transporter
CYJ15_04940	COG1473	amidohydrolase
CYJ15_04945	COG3069	C4-dicarboxylate transmembrane transporter activity
CYJ15_04950	COG2329	Antibiotic biosynthesis monooxygenase
CYJ15_04955	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CYJ15_04970	COG1309	transcriptional regulator
CYJ15_04975	COG1511	domain protein
CYJ15_04980	COG1263	PTS System
CYJ15_04980	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_04980	COG2190	(PTS) system
CYJ15_04980	COG2190	(PTS) system
CYJ15_04980	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_04980	COG1263	PTS System
CYJ15_04985	COG1349	DNA-binding transcription factor activity
CYJ15_04990	COG3254	rhamnose metabolic process
CYJ15_04995	COG2814	Major facilitator Superfamily
CYJ15_05000	COG0697	spore germination
CYJ15_05005	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_05010	COG1999	signal sequence binding
CYJ15_05025	COG0095	Lipoate-protein ligase
CYJ15_05030	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_05040	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CYJ15_05050	COG0501	Belongs to the peptidase M48B family
CYJ15_05075	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
CYJ15_05080	COG1074	ATP-dependent DNA helicase activity
CYJ15_05115	COG2311	Membrane
CYJ15_05120	COG0179	Fumarylacetoacetate (FAA) hydrolase
CYJ15_05135	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_05140	COG1307	EDD domain protein, DegV family
CYJ15_05150	COG0561	phosphatase activity
CYJ15_05155	COG2151	metal-sulfur cluster biosynthetic enzyme
CYJ15_05185	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CYJ15_05190	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CYJ15_05205	COG4608	Belongs to the ABC transporter superfamily
CYJ15_05210	COG0601	transmembrane transport
CYJ15_05220	COG0747	negative chemotaxis
CYJ15_05235	COG0180	Tryptophanyl-tRNA synthetase
CYJ15_05250	COG4166	transmembrane transport
CYJ15_05255	COG0601	transmembrane transport
CYJ15_05260	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CYJ15_05265	COG0444	Belongs to the ABC transporter superfamily
CYJ15_05270	COG4608	Belongs to the ABC transporter superfamily
CYJ15_05275	COG1393	Belongs to the ArsC family
CYJ15_05285	COG4862	establishment of competence for transformation
CYJ15_05290	COG4469	Competence protein
CYJ15_05305	COG1164	Oligoendopeptidase f
CYJ15_05320	COG2346	COG2346, Truncated hemoglobins
CYJ15_05335	COG0741	lytic transglycosylase activity
CYJ15_05350	COG2357	RelA SpoT domain protein
CYJ15_05355	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CYJ15_05360	COG0564	pseudouridine synthase activity
CYJ15_05370	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CYJ15_05375	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CYJ15_05410	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CYJ15_05445	COG2153	protein acetylation
CYJ15_05455	COG2382	esterase
CYJ15_05465	COG4193	domain, Protein
CYJ15_05500	COG1840	ABC-type Fe3 transport system, periplasmic component
CYJ15_05505	COG3842	ATPase activity
CYJ15_05510	COG1176	ABC-type spermidine putrescine transport system, permease component I
CYJ15_05515	COG1177	transmembrane transport
CYJ15_05565	COG1940	carbohydrate kinase activity
CYJ15_05575	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_05580	COG4152	abc transporter atp-binding protein
CYJ15_05585	COG1668	transmembrane transport
CYJ15_05595	COG3579	cysteine-type endopeptidase activity
CYJ15_05625	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CYJ15_05630	COG3344	reverse transcriptase
CYJ15_05635	COG2059	Chromate
CYJ15_05640	COG2059	Chromate
CYJ15_05645	COG1522	sequence-specific DNA binding
CYJ15_05650	COG0477	Major facilitator Superfamily
CYJ15_05655	COG0405	Gamma-glutamyltransferase
CYJ15_05660	COG0154	amidase activity
CYJ15_05685	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CYJ15_05690	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CYJ15_05715	COG3344	reverse transcriptase
CYJ15_05725	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CYJ15_05750	COG1609	Transcriptional regulator
CYJ15_05760	COG1554	hydrolase, family 65, central catalytic
CYJ15_05765	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CYJ15_05810	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_05830	COG1959	2 iron, 2 sulfur cluster binding
CYJ15_05840	COG0730	response to heat
CYJ15_05845	COG0783	Belongs to the Dps family
CYJ15_05850	COG0673	inositol 2-dehydrogenase activity
CYJ15_05855	COG3852	Histidine kinase
CYJ15_05860	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CYJ15_05870	COG0861	Integral membrane protein TerC family
CYJ15_05880	COG5002	protein histidine kinase activity
CYJ15_05885	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CYJ15_05905	COG0542	response to heat
CYJ15_05910	COG3949	Membrane
CYJ15_05925	COG4873	Protein conserved in bacteria
CYJ15_05940	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYJ15_05950	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_05955	COG2084	Dehydrogenase
CYJ15_05960	COG0436	Aminotransferase
CYJ15_05965	COG0835	chemotaxis
CYJ15_05965	COG0784	Response regulator, receiver
CYJ15_05975	COG2409	Drug exporters of the RND superfamily
CYJ15_05975	COG1033	growth of symbiont in host cell
CYJ15_05995	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_06005	COG4703	Protein of unknown function (DUF1797)
CYJ15_06010	COG0517	IMP dehydrogenase activity
CYJ15_06015	COG0583	DNA-binding transcription factor activity
CYJ15_06020	COG2171	N-acyltransferase activity
CYJ15_06025	COG1473	amidohydrolase
CYJ15_06040	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CYJ15_06085	COG1982	Orn Lys Arg decarboxylase major
CYJ15_06090	COG4476	Belongs to the UPF0223 family
CYJ15_06105	COG0483	inositol monophosphate 1-phosphatase activity
CYJ15_06125	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CYJ15_06130	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CYJ15_06135	COG4838	Belongs to the UPF0358 family
CYJ15_06140	COG0772	Belongs to the SEDS family
CYJ15_06145	COG1612	heme a metabolic process
CYJ15_06150	COG0109	protoheme IX farnesyltransferase activity
CYJ15_06170	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CYJ15_06175	COG3336	cytochrome c oxidase
CYJ15_06185	COG2340	Cysteine-rich secretory protein family
CYJ15_06190	COG2050	protein possibly involved in aromatic compounds catabolism
CYJ15_06220	COG3679	Belongs to the UPF0342 family
CYJ15_06240	COG0742	ribosomal rna small subunit methyltransferase
CYJ15_06245	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CYJ15_06250	COG3314	Sporulation integral membrane protein YlbJ
CYJ15_06255	COG1752	Esterase of the alpha-beta hydrolase superfamily
CYJ15_06260	COG3480	Lon protease (S16) C-terminal proteolytic domain
CYJ15_06270	COG1323	Belongs to the UPF0348 family
CYJ15_06275	COG1399	metal-binding, possibly nucleic acid-binding protein
CYJ15_06280	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CYJ15_06290	COG0454	-acetyltransferase
CYJ15_06295	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CYJ15_06300	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
CYJ15_06310	COG0275	rRNA processing
CYJ15_06315	COG4839	cell division protein FtsL
CYJ15_06325	COG0768	penicillin binding
CYJ15_06340	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CYJ15_06345	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CYJ15_06350	COG0772	Belongs to the SEDS family
CYJ15_06355	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CYJ15_06360	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CYJ15_06365	COG0849	cell division
CYJ15_06370	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CYJ15_06385	COG1191	sigma factor activity
CYJ15_06390	COG1191	sigma factor activity
CYJ15_06395	COG1873	PFAM PRC-barrel domain
CYJ15_06400	COG3584	3D domain protein
CYJ15_06400	COG1388	LysM domain
CYJ15_06410	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CYJ15_06415	COG1799	cell septum assembly
CYJ15_06420	COG0762	integral membrane protein
CYJ15_06425	COG2302	S4 RNA-binding domain
CYJ15_06430	COG3599	regulation of cell shape
CYJ15_06450	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CYJ15_06455	COG0564	pseudouridine synthase activity
CYJ15_06465	COG0540	Belongs to the ATCase OTCase family
CYJ15_06470	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CYJ15_06490	COG0167	dihydroorotate dehydrogenase activity
CYJ15_06495	COG0284	orotidine-5'-phosphate decarboxylase activity
CYJ15_06500	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CYJ15_06510	COG3328	transposase activity
CYJ15_06525	COG1917	Cupin 2, conserved barrel domain protein
CYJ15_06525	COG2207	Transcriptional regulator
CYJ15_06530	COG1070	Carbohydrate kinase
CYJ15_06540	COG0235	Class ii aldolase
CYJ15_06545	COG1454	alcohol dehydrogenase
CYJ15_06550	COG1803	Methylglyoxal synthase
CYJ15_06555	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CYJ15_06560	COG0477	Major facilitator Superfamily
CYJ15_06565	COG0477	Major facilitator Superfamily
CYJ15_06570	COG1309	transcriptional regulator
CYJ15_06585	COG0628	permease
CYJ15_06590	COG0561	phosphatase activity
CYJ15_06610	COG1131	(ABC) transporter
CYJ15_06630	COG2207	Transcriptional regulator
CYJ15_06640	COG2376	Dihydroxyacetone kinase
CYJ15_06645	COG1461	Dihydroxyacetone kinase
CYJ15_06650	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
CYJ15_06660	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CYJ15_06665	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CYJ15_06675	COG1522	sequence-specific DNA binding
CYJ15_06685	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CYJ15_06695	COG1794	racemase activity, acting on amino acids and derivatives
CYJ15_06715	COG0720	synthase
CYJ15_06725	COG0385	Bile acid
CYJ15_06735	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CYJ15_06740	COG1561	YicC-like family, N-terminal region
CYJ15_06745	COG2052	Domain of unknown function (DUF370)
CYJ15_06750	COG0194	GDP metabolic process
CYJ15_06760	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CYJ15_06765	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CYJ15_06770	COG0242	peptide deformylase activity
CYJ15_06775	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CYJ15_06780	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CYJ15_06780	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CYJ15_06785	COG0631	protein serine/threonine phosphatase activity
CYJ15_06790	COG2815	serine threonine protein kinase
CYJ15_06790	COG0515	serine threonine protein kinase
CYJ15_06800	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CYJ15_06805	COG1564	THIamine pyrophosphokinase
CYJ15_06815	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CYJ15_06820	COG1302	Protein conserved in bacteria
CYJ15_06825	COG1461	Dihydroxyacetone kinase
CYJ15_06835	COG1760	l-serine dehydratase
CYJ15_06840	COG1760	l-serine dehydratase
CYJ15_06845	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CYJ15_06850	COG2050	protein possibly involved in aromatic compounds catabolism
CYJ15_06850	COG1349	DNA-binding transcription factor activity
CYJ15_06855	COG0416	fatty acid biosynthetic process
CYJ15_06860	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CYJ15_06865	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_06870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CYJ15_06875	COG0571	ribonuclease III activity
CYJ15_06880	COG1196	nuclear chromosome segregation
CYJ15_06885	COG0552	protein localization to endoplasmic reticulum
CYJ15_06895	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CYJ15_06905	COG1837	Belongs to the UPF0109 family
CYJ15_06915	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CYJ15_06920	COG0336	Belongs to the RNA methyltransferase TrmD family
CYJ15_06935	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CYJ15_06950	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CYJ15_06955	COG0045	succinate-CoA ligase (ADP-forming) activity
CYJ15_06960	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CYJ15_06965	COG0758	DNA mediated transformation
CYJ15_06970	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CYJ15_06985	COG4974	Belongs to the 'phage' integrase family
CYJ15_06990	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CYJ15_07000	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
CYJ15_07005	COG1815	bacterial-type flagellum-dependent cell motility
CYJ15_07010	COG1558	bacterial-type flagellum-dependent cell motility
CYJ15_07015	COG1677	Flagellar hook-basal body complex protein FliE
CYJ15_07020	COG1766	The M ring may be actively involved in energy transduction
CYJ15_07025	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CYJ15_07030	COG1317	bacterial-type flagellum organization
CYJ15_07035	COG1157	protein secretion by the type III secretion system
CYJ15_07040	COG2882	bacterial-type flagellum organization
CYJ15_07055	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CYJ15_07065	COG4786	Flagellar basal body rod
CYJ15_07075	COG1580	Controls the rotational direction of flagella during chemotaxis
CYJ15_07080	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CYJ15_07085	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CYJ15_07085	COG1776	CheC inhibitor of MCP methylation
CYJ15_07090	COG2201	protein-glutamate methylesterase activity
CYJ15_07095	COG3190	flagellar
CYJ15_07100	COG1338	Plays a role in the flagellum-specific transport system
CYJ15_07105	COG1987	bacterial-type flagellum assembly
CYJ15_07110	COG1684	flagellar biosynthetic protein fliR
CYJ15_07115	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CYJ15_07120	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CYJ15_07125	COG1419	protein localization to endoplasmic reticulum
CYJ15_07130	COG0455	bacterial-type flagellum organization
CYJ15_07135	COG2201	protein-glutamate methylesterase activity
CYJ15_07140	COG2198	Histidine kinase
CYJ15_07140	COG0643	Histidine kinase
CYJ15_07145	COG0835	chemotaxis
CYJ15_07150	COG1776	CheC inhibitor of MCP methylation
CYJ15_07155	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CYJ15_07160	COG1191	sigma factor activity
CYJ15_07170	COG0052	Belongs to the universal ribosomal protein uS2 family
CYJ15_07175	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CYJ15_07180	COG0528	UMP kinase activity
CYJ15_07185	COG0233	cytoplasmic translational termination
CYJ15_07195	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CYJ15_07200	COG4589	Belongs to the CDS family
CYJ15_07210	COG0750	zinc metalloprotease
CYJ15_07215	COG0442	prolyl-tRNA aminoacylation
CYJ15_07220	COG2176	DNA-directed DNA polymerase activity
CYJ15_07225	COG0779	Required for maturation of 30S ribosomal subunits
CYJ15_07230	COG0195	Participates in both transcription termination and antitermination
CYJ15_07235	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CYJ15_07240	COG1358	cellular component organization or biogenesis
CYJ15_07250	COG1550	Protein conserved in bacteria
CYJ15_07255	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CYJ15_07260	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CYJ15_07265	COG0196	riboflavin kinase activity
CYJ15_07270	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CYJ15_07275	COG1185	polyribonucleotide nucleotidyltransferase activity
CYJ15_07280	COG0726	polysaccharide deacetylase
CYJ15_07285	COG0612	Peptidase, M16
CYJ15_07290	COG1873	PFAM PRC-barrel domain
CYJ15_07295	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CYJ15_07300	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CYJ15_07305	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CYJ15_07315	COG0527	aspartate kinase activity
CYJ15_07325	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CYJ15_07330	COG0740	serine-type endopeptidase activity
CYJ15_07340	COG1674	ftsk spoiiie
CYJ15_07340	COG4980	gas vesicle protein
CYJ15_07365	COG0612	Peptidase, M16
CYJ15_07370	COG0612	Peptidase, M16
CYJ15_07375	COG0300	oxidoreductase activity
CYJ15_07390	COG1426	Protein conserved in bacteria
CYJ15_07395	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CYJ15_07400	COG1058	Belongs to the CinA family
CYJ15_07400	COG1546	Belongs to the CinA family
CYJ15_07410	COG1418	mRNA catabolic process
CYJ15_07415	COG1692	metallophosphoesterase
CYJ15_07420	COG2359	stage V sporulation protein S
CYJ15_07435	COG0531	amino acid
CYJ15_07455	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CYJ15_07460	COG4550	Control of competence regulator ComK, YlbF/YmcA
CYJ15_07470	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CYJ15_07475	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CYJ15_07505	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CYJ15_07520	COG0464	growth
CYJ15_07525	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CYJ15_07530	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CYJ15_07535	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CYJ15_07555	COG1321	iron dependent repressor
CYJ15_07565	COG2759	Belongs to the formate--tetrahydrofolate ligase family
CYJ15_07575	COG1418	mRNA catabolic process
CYJ15_07580	COG0488	(ABC) transporter
CYJ15_07585	COG1413	lyase activity
CYJ15_07605	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CYJ15_07610	COG1272	protein, Hemolysin III
CYJ15_07615	COG2755	lipolytic protein G-D-S-L family
CYJ15_07625	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CYJ15_07625	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CYJ15_07630	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CYJ15_07635	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CYJ15_07645	COG0840	transmembrane signaling receptor activity
CYJ15_07650	COG4479	Belongs to the UPF0346 family
CYJ15_07670	COG1876	peptidase activity
CYJ15_07685	COG0793	Belongs to the peptidase S41A family
CYJ15_07685	COG3409	Peptidoglycan-binding domain 1 protein
CYJ15_07690	COG1846	Transcriptional regulator
CYJ15_07695	COG2340	Cysteine-rich secretory protein family
CYJ15_07700	COG0534	Mate efflux family protein
CYJ15_07715	COG3285	dna ligase
CYJ15_07715	COG1793	dna ligase
CYJ15_07720	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
CYJ15_07725	COG0671	phosphoesterase, PA-phosphatase related
CYJ15_07730	COG1368	sulfuric ester hydrolase activity
CYJ15_07745	COG1331	Highly conserved protein containing a thioredoxin domain
CYJ15_07750	COG2814	Major facilitator Superfamily
CYJ15_07760	COG0745	RESPONSE REGULATOR receiver
CYJ15_07765	COG5002	protein histidine kinase activity
CYJ15_07775	COG0567	Dehydrogenase, E1 component
CYJ15_07780	COG0508	dehydrogenase complex catalyzes the overall conversion of
CYJ15_07785	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_07795	COG0706	membrane insertase activity
CYJ15_07805	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CYJ15_07825	COG2135	peptidase activity
CYJ15_07835	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CYJ15_07840	COG0517	IMP dehydrogenase activity
CYJ15_07840	COG0516	GMP reductase activity
CYJ15_07845	COG0723	plastoquinol--plastocyanin reductase activity
CYJ15_07845	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CYJ15_07850	COG1388	LysM domain
CYJ15_07850	COG3584	3D domain protein
CYJ15_07860	COG1113	amino acid transport
CYJ15_07865	COG1280	lysine exporter protein (LysE YggA)
CYJ15_07870	COG0598	Magnesium transport protein CorA
CYJ15_07880	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CYJ15_07885	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CYJ15_07890	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CYJ15_07895	COG0131	Imidazoleglycerol-phosphate dehydratase
CYJ15_07900	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CYJ15_07910	COG0107	imidazoleglycerol-phosphate synthase activity
CYJ15_07915	COG0140	phosphoribosyl-ATP diphosphatase activity
CYJ15_07915	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CYJ15_07925	COG2391	methyltransferase activity
CYJ15_07930	COG2962	Rard protein
CYJ15_07935	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CYJ15_07940	COG0569	domain protein
CYJ15_07960	COG2807	transmembrane transport
CYJ15_07965	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CYJ15_07975	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CYJ15_07985	COG1278	Cold shock
CYJ15_07990	COG0302	gtp cyclohydrolase
CYJ15_07995	COG0492	ferredoxin-NADP+ reductase activity
CYJ15_08010	COG0577	efflux transmembrane transporter activity
CYJ15_08015	COG1136	(ABC) transporter
CYJ15_08020	COG0642	Histidine kinase
CYJ15_08025	COG0745	RESPONSE REGULATOR receiver
CYJ15_08040	COG0640	Transcriptional regulator
CYJ15_08045	COG2814	Major facilitator Superfamily
CYJ15_08050	COG5039	Polysaccharide pyruvyl transferase
CYJ15_08055	COG1113	amino acid transport
CYJ15_08070	COG0477	Major facilitator Superfamily
CYJ15_08080	COG1132	(ABC) transporter
CYJ15_08085	COG1132	(ABC) transporter
CYJ15_08095	COG1380	Effector of murein hydrolase LrgA
CYJ15_08100	COG1346	cytolysis
CYJ15_08105	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_08130	COG2309	aminopeptidase activity
CYJ15_08140	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CYJ15_08160	COG0824	Thioesterase
CYJ15_08170	COG4841	protein insertion into membrane
CYJ15_08175	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CYJ15_08180	COG1832	CoA-binding protein
CYJ15_08185	COG0187	DNA topoisomerase II activity
CYJ15_08190	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CYJ15_08205	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CYJ15_08210	COG0574	Belongs to the PEP-utilizing enzyme family
CYJ15_08210	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CYJ15_08235	COG2070	2-Nitropropane dioxygenase
CYJ15_08245	COG0681	Belongs to the peptidase S26 family
CYJ15_08255	COG0473	3-isopropylmalate dehydrogenase activity
CYJ15_08265	COG2226	methyltransferase
CYJ15_08290	COG0456	acetyltransferase
CYJ15_08295	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CYJ15_08300	COG0456	acetyltransferase
CYJ15_08335	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CYJ15_08340	COG0351	phosphomethylpyrimidine kinase
CYJ15_08345	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_08350	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
CYJ15_08355	COG0351	phosphomethylpyrimidine kinase
CYJ15_08365	COG2258	MOSC domain
CYJ15_08405	COG1309	transcriptional regulator
CYJ15_08410	COG2814	Major facilitator Superfamily
CYJ15_08415	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CYJ15_08420	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CYJ15_08430	COG1809	phosphosulfolactate synthase activity
CYJ15_08435	COG2045	Belongs to the ComB family
CYJ15_08440	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CYJ15_08445	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CYJ15_08455	COG0789	Transcriptional regulator
CYJ15_08460	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CYJ15_08465	COG0697	spore germination
CYJ15_08470	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CYJ15_08475	COG0022	dehydrogenase e1 component
CYJ15_08480	COG0508	dehydrogenase complex catalyzes the overall conversion of
CYJ15_08485	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CYJ15_08490	COG3284	Transcriptional regulator
CYJ15_08495	COG1511	domain protein
CYJ15_08495	COG3264	Mechanosensitive ion channel
CYJ15_08510	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CYJ15_08520	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CYJ15_08535	COG0183	Belongs to the thiolase family
CYJ15_08540	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_08550	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CYJ15_08555	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CYJ15_08560	COG2508	Transcriptional regulator
CYJ15_08565	COG2233	PERMEase
CYJ15_08575	COG2072	flavoprotein involved in K transport
CYJ15_08585	COG0561	phosphatase activity
CYJ15_08590	COG2322	membrane
CYJ15_08605	COG0039	L-malate dehydrogenase activity
CYJ15_08610	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_08615	COG2223	nitrite transmembrane transporter activity
CYJ15_08620	COG3773	Cell wall hydrolase
CYJ15_08630	COG0708	Exodeoxyribonuclease III
CYJ15_08640	COG0297	glycogen (starch) synthase activity
CYJ15_08645	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CYJ15_08650	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CYJ15_08655	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CYJ15_08680	COG1247	-acetyltransferase
CYJ15_08685	COG0494	nUDIX hydrolase
CYJ15_08690	COG1914	H( )-stimulated, divalent metal cation uptake system
CYJ15_08695	COG0783	Belongs to the Dps family
CYJ15_08705	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
CYJ15_08710	COG1131	(ABC) transporter
CYJ15_08735	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CYJ15_08745	COG2030	dehydratase
CYJ15_08750	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_08755	COG0277	FAD linked oxidase domain protein
CYJ15_08765	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CYJ15_08770	COG0709	Synthesizes selenophosphate from selenide and ATP
CYJ15_08780	COG0701	Predicted permease
CYJ15_08785	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CYJ15_08790	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CYJ15_08800	COG1252	NADH dehydrogenase
CYJ15_08805	COG2404	hydrolase activity, acting on ester bonds
CYJ15_08815	COG4990	cell redox homeostasis
CYJ15_08820	COG0789	Transcriptional regulator
CYJ15_08845	COG0436	Aminotransferase
CYJ15_08850	COG0165	Argininosuccinate lyase
CYJ15_08855	COG0137	argininosuccinate synthase activity
CYJ15_08860	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CYJ15_08865	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CYJ15_08870	COG0505	Belongs to the CarA family
CYJ15_08875	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CYJ15_08880	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CYJ15_08885	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CYJ15_08890	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CYJ15_08905	COG3546	catalase activity
CYJ15_08925	COG1619	proteins homologs of microcin C7 resistance protein MccF
CYJ15_08930	COG2027	D-alanyl-D-alanine carboxypeptidase
CYJ15_08935	COG0204	Acyl-transferase
CYJ15_08945	COG4846	Membrane protein involved in cytochrome C biogenesis
CYJ15_08950	COG2201	protein-glutamate methylesterase activity
CYJ15_08955	COG0785	Cytochrome C biogenesis protein
CYJ15_08960	COG3763	UPF0154 protein
CYJ15_08975	COG4224	UPF0291 protein
CYJ15_08980	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CYJ15_08990	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CYJ15_08995	COG0174	glutamine synthetase
CYJ15_09000	COG0789	Transcriptional regulator
CYJ15_09005	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CYJ15_09020	COG2233	PERMEase
CYJ15_09035	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CYJ15_09040	COG0116	Belongs to the methyltransferase superfamily
CYJ15_09055	COG4474	Belongs to the UPF0398 family
CYJ15_09065	COG3359	exonuclease
CYJ15_09070	COG1205	dead DEAH box helicase
CYJ15_09070	COG1111	helicase
CYJ15_09075	COG0071	Belongs to the small heat shock protein (HSP20) family
CYJ15_09100	COG3331	DNA recombination
CYJ15_09105	COG4499	WXG100 protein secretion system (Wss), protein YukC
CYJ15_09105	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CYJ15_09110	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CYJ15_09115	COG3935	DnaD domain protein
CYJ15_09120	COG3344	reverse transcriptase
CYJ15_09125	COG0017	Asparaginyl-tRNA synthetase
CYJ15_09140	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CYJ15_09140	COG1199	ATP-dependent helicase activity
CYJ15_09145	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CYJ15_09150	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CYJ15_09170	COG0438	transferase activity, transferring glycosyl groups
CYJ15_09175	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CYJ15_09180	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CYJ15_09185	COG1694	Mazg nucleotide pyrophosphohydrolase
CYJ15_09190	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CYJ15_09200	COG2738	Putative neutral zinc metallopeptidase
CYJ15_09210	COG4347	Protein of unknown function (DUF1405)
CYJ15_09220	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CYJ15_09235	COG5582	Belongs to the UPF0302 family
CYJ15_09240	COG0457	Tetratricopeptide repeat
CYJ15_09250	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CYJ15_09255	COG0287	Prephenate dehydrogenase
CYJ15_09260	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CYJ15_09265	COG4401	Chorismate mutase type I
CYJ15_09270	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CYJ15_09275	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CYJ15_09280	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CYJ15_09285	COG0105	UTP biosynthetic process
CYJ15_09290	COG0142	geranyltranstransferase activity
CYJ15_09300	COG0142	geranyltranstransferase activity
CYJ15_09315	COG0776	regulation of translation
CYJ15_09320	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CYJ15_09340	COG1160	GTP binding
CYJ15_09355	COG0539	negative regulation of cytoplasmic translation
CYJ15_09360	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CYJ15_09365	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
CYJ15_09370	COG2959	enzyme of heme biosynthesis
CYJ15_09375	COG3773	Cell wall hydrolase
CYJ15_09375	COG3409	Peptidoglycan-binding domain 1 protein
CYJ15_09380	COG2339	peptidase activity
CYJ15_09385	COG0492	ferredoxin-NADP+ reductase activity
CYJ15_09390	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CYJ15_09400	COG1408	metallophosphoesterase
CYJ15_09415	COG3546	catalase activity
CYJ15_09430	COG1266	CAAX protease self-immunity
CYJ15_09435	COG0514	ATP-dependent DNA helicase (RecQ)
CYJ15_09445	COG1141	Ferredoxin
CYJ15_09450	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CYJ15_09455	COG0739	heme binding
CYJ15_09455	COG0741	lytic transglycosylase activity
CYJ15_09455	COG1196	nuclear chromosome segregation
CYJ15_09460	COG5002	protein histidine kinase activity
CYJ15_09465	COG0745	RESPONSE REGULATOR receiver
CYJ15_09470	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYJ15_09475	COG1333	cytochrome c biogenesis protein
CYJ15_09480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CYJ15_09485	COG1187	pseudouridine synthase activity
CYJ15_09490	COG0700	Nucleoside recognition
CYJ15_09495	COG2715	membrane protein required for spore maturation
CYJ15_09500	COG1686	Belongs to the peptidase S11 family
CYJ15_09505	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CYJ15_09530	COG0697	spore germination
CYJ15_09550	COG1191	sigma factor activity
CYJ15_09565	COG1686	Belongs to the peptidase S11 family
CYJ15_09570	COG4974	Belongs to the 'phage' integrase family
CYJ15_09580	COG0735	belongs to the Fur family
CYJ15_09585	COG1300	Membrane
CYJ15_09590	COG1379	DNA repair
CYJ15_09605	COG0667	Aldo Keto reductase
CYJ15_09615	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
CYJ15_09620	COG3853	Toxic anion resistance protein (TelA)
CYJ15_09625	COG1073	alpha beta
CYJ15_09630	COG3858	chitin binding
CYJ15_09630	COG1388	LysM domain
CYJ15_09640	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CYJ15_09645	COG0300	oxidoreductase activity
CYJ15_09665	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CYJ15_09675	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CYJ15_09680	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CYJ15_09690	COG2195	Cleaves the N-terminal amino acid of tripeptides
CYJ15_09700	COG1376	ErfK ybiS ycfS ynhG family protein
CYJ15_09710	COG1105	Belongs to the carbohydrate kinase PfkB family
CYJ15_09715	COG0508	dehydrogenase complex catalyzes the overall conversion of
CYJ15_09720	COG0022	dehydrogenase e1 component
CYJ15_09725	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CYJ15_09730	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CYJ15_09750	COG0584	glycerophosphoryl diester phosphodiesterase
CYJ15_09755	COG0745	RESPONSE REGULATOR receiver
CYJ15_09765	COG0750	zinc metalloprotease
CYJ15_09770	COG0497	DNA recombination
CYJ15_09780	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CYJ15_09785	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CYJ15_09800	COG1570	exodeoxyribonuclease VII activity
CYJ15_09815	COG1302	Protein conserved in bacteria
CYJ15_09820	COG0439	Biotin carboxylase
CYJ15_09825	COG0511	ligase activity, forming carbon-carbon bonds
CYJ15_09865	COG3854	ATPases associated with a variety of cellular activities
CYJ15_09870	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CYJ15_09875	COG0006	proline dipeptidase activity
CYJ15_09880	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CYJ15_09890	COG3872	metal-dependent enzyme
CYJ15_09900	COG1752	Esterase of the alpha-beta hydrolase superfamily
CYJ15_09910	COG3327	negative regulation of DNA-templated transcription, initiation
CYJ15_09915	COG0183	Belongs to the thiolase family
CYJ15_09920	COG1250	3-hydroxyacyl-CoA dehydrogenase
CYJ15_09925	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_09930	COG1024	Enoyl-CoA hydratase
CYJ15_09935	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CYJ15_09940	COG0095	Lipoate-protein ligase
CYJ15_09945	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CYJ15_09950	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CYJ15_09960	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CYJ15_09965	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CYJ15_09980	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CYJ15_10005	COG4537	Required for transformation and DNA binding
CYJ15_10010	COG1459	type II secretion system
CYJ15_10015	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CYJ15_10030	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CYJ15_10040	COG1940	carbohydrate kinase activity
CYJ15_10045	COG4483	Protein conserved in bacteria
CYJ15_10050	COG0705	Rhomboid family
CYJ15_10050	COG0457	Tetratricopeptide repeat
CYJ15_10055	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CYJ15_10070	COG0477	Major facilitator Superfamily
CYJ15_10075	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CYJ15_10085	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CYJ15_10090	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
CYJ15_10095	COG0735	belongs to the Fur family
CYJ15_10100	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CYJ15_10105	COG1121	(ABC) transporter
CYJ15_10115	COG3883	PFAM NLP P60 protein
CYJ15_10115	COG0791	NLP P60 protein
CYJ15_10120	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CYJ15_10125	COG0513	Belongs to the DEAD box helicase family
CYJ15_10135	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CYJ15_10140	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CYJ15_10145	COG2384	SAM-dependent methyltransferase
CYJ15_10150	COG2010	Cytochrome c
CYJ15_10160	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CYJ15_10165	COG0358	DNA primase activity
CYJ15_10175	COG0517	IMP dehydrogenase activity
CYJ15_10185	COG1381	Involved in DNA repair and RecF pathway recombination
CYJ15_10200	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CYJ15_10205	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CYJ15_10210	COG1480	7TM receptor with intracellular HD hydrolase
CYJ15_10215	COG1702	phosphate starvation-inducible protein PhoH
CYJ15_10230	COG1610	YqeY-like protein
CYJ15_10240	COG1254	Belongs to the acylphosphatase family
CYJ15_10245	COG1283	sodium-dependent phosphate transmembrane transporter activity
CYJ15_10250	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CYJ15_10255	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CYJ15_10260	COG2264	protein methyltransferase activity
CYJ15_10270	COG0443	Heat shock 70 kDa protein
CYJ15_10275	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CYJ15_10285	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CYJ15_10290	COG0481	GTPase activity
CYJ15_10295	COG0860	N-Acetylmuramoyl-L-alanine amidase
CYJ15_10300	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CYJ15_10305	COG0268	Binds directly to 16S ribosomal RNA
CYJ15_10310	COG1466	dna polymerase III delta subunit
CYJ15_10320	COG0658	competence protein
CYJ15_10320	COG2333	competence protein COMEC
CYJ15_10325	COG2131	deaminase
CYJ15_10330	COG1596	polysaccharide export
CYJ15_10330	COG1555	photosystem II stabilization
CYJ15_10335	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CYJ15_10340	COG2226	methyltransferase
CYJ15_10345	COG0799	negative regulation of ribosome biogenesis
CYJ15_10350	COG1713	HD superfamily hydrolase involved in NAD metabolism
CYJ15_10355	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CYJ15_10360	COG1534	Rna-binding protein
CYJ15_10365	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CYJ15_10370	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CYJ15_10375	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
CYJ15_10380	COG0247	lactate metabolic process
CYJ15_10385	COG0277	FAD linked oxidase domain protein
CYJ15_10390	COG3835	regulator
CYJ15_10395	COG2132	Multicopper oxidase
CYJ15_10400	COG0071	Belongs to the small heat shock protein (HSP20) family
CYJ15_10405	COG2210	Belongs to the sulfur carrier protein TusA family
CYJ15_10420	COG0446	pyridine nucleotide-disulphide oxidoreductase
CYJ15_10435	COG2132	Multicopper oxidase
CYJ15_10440	COG0071	Belongs to the small heat shock protein (HSP20) family
CYJ15_10450	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CYJ15_10460	COG1704	LemA family
CYJ15_10470	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CYJ15_10490	COG1183	phosphatidylcholine synthase activity
CYJ15_10505	COG3634	alkyl hydroperoxide reductase activity
CYJ15_10510	COG0450	alkyl hydroperoxide reductase
CYJ15_10540	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CYJ15_10545	COG0572	uridine kinase
CYJ15_10555	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CYJ15_10560	COG3906	Belongs to the UPF0473 family
CYJ15_10565	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CYJ15_10570	COG4472	Bacterial protein of unknown function (DUF965)
CYJ15_10575	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CYJ15_10580	COG0628	permease
CYJ15_10610	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CYJ15_10620	COG0482	sulfurtransferase activity
CYJ15_10625	COG1104	cysteine desulfurase activity
CYJ15_10630	COG1959	2 iron, 2 sulfur cluster binding
CYJ15_10645	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_10650	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CYJ15_10655	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CYJ15_10660	COG0385	Bile acid
CYJ15_10670	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CYJ15_10675	COG0124	histidyl-tRNA synthetase
CYJ15_10680	COG0860	N-Acetylmuramoyl-L-alanine amidase
CYJ15_10680	COG3103	Sh3 type 3 domain protein
CYJ15_10680	COG4991	sh3 domain protein
CYJ15_10685	COG2814	Major facilitator Superfamily
CYJ15_10690	COG1566	PFAM secretion protein HlyD family protein
CYJ15_10695	COG1846	Transcriptional regulator
CYJ15_10700	COG1490	D-aminoacyl-tRNA deacylase activity
CYJ15_10705	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CYJ15_10710	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CYJ15_10715	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CYJ15_10715	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CYJ15_10720	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CYJ15_10720	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CYJ15_10730	COG2244	polysaccharide biosynthetic process
CYJ15_10735	COG2323	membrane
CYJ15_10745	COG1862	Preprotein translocase
CYJ15_10750	COG0343	queuine tRNA-ribosyltransferase activity
CYJ15_10755	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CYJ15_10770	COG0632	four-way junction helicase activity
CYJ15_10775	COG0217	transcriptional regulatory protein
CYJ15_10785	COG1388	LysM domain
CYJ15_10790	COG1827	regulation of RNA biosynthetic process
CYJ15_10795	COG0077	Prephenate dehydratase
CYJ15_10800	COG4492	Belongs to the UPF0735 family
CYJ15_10805	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CYJ15_10810	COG3290	protein histidine kinase activity
CYJ15_10815	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CYJ15_10820	COG2868	ribosomal protein
CYJ15_10825	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CYJ15_10830	COG1530	ribonuclease E activity
CYJ15_10835	COG1994	Peptidase M50
CYJ15_10845	COG2894	cell division
CYJ15_10850	COG0850	regulation of cytokinetic process
CYJ15_10860	COG1792	Involved in formation and maintenance of cell shape
CYJ15_10865	COG1077	Cell shape determining protein MreB Mrl
CYJ15_10870	COG2003	Belongs to the UPF0758 family
CYJ15_10880	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CYJ15_10905	COG1459	type II secretion system
CYJ15_10915	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CYJ15_10950	COG0285	dihydrofolate synthase activity
CYJ15_10955	COG0525	valine-tRNA ligase activity
CYJ15_10965	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CYJ15_10970	COG1388	LysM domain
CYJ15_10970	COG1388	LysM domain
CYJ15_10975	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CYJ15_10980	COG0113	porphobilinogen synthase activity
CYJ15_10995	COG0181	hydroxymethylbilane synthase activity
CYJ15_11000	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CYJ15_11015	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CYJ15_11020	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CYJ15_11025	COG0470	DNA polymerase III
CYJ15_11025	COG1067	ATP-dependent peptidase activity
CYJ15_11035	COG0544	peptidyl-prolyl cis-trans isomerase activity
CYJ15_11040	COG1477	protein flavinylation
CYJ15_11040	COG0457	Tetratricopeptide repeat
CYJ15_11060	COG0622	Phosphoesterase
CYJ15_11065	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CYJ15_11070	COG5401	PFAM Sporulation and spore germination
CYJ15_11080	COG5577	PFAM Coat F domain
CYJ15_11085	COG1063	alcohol dehydrogenase
CYJ15_11090	COG5577	PFAM Coat F domain
CYJ15_11105	COG1846	Transcriptional regulator
CYJ15_11135	COG2197	response regulator
CYJ15_11140	COG0824	Thioesterase
CYJ15_11145	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CYJ15_11150	COG1053	succinate dehydrogenase
CYJ15_11155	COG2009	succinate dehydrogenase
CYJ15_11160	COG1719	4-vinyl reductase, 4VR
CYJ15_11170	COG0322	excinuclease ABC activity
CYJ15_11175	COG3118	belongs to the thioredoxin family
CYJ15_11180	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CYJ15_11185	COG2086	electron transfer activity
CYJ15_11190	COG1024	Enoyl-CoA hydratase
CYJ15_11195	COG1309	transcriptional regulator
CYJ15_11200	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_11205	COG1193	negative regulation of DNA recombination
CYJ15_11210	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CYJ15_11210	COG1796	DNA polymerase
CYJ15_11215	COG1286	toxin biosynthetic process
CYJ15_11220	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
CYJ15_11230	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CYJ15_11230	COG0072	phenylalanine-tRNA ligase activity
CYJ15_11235	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CYJ15_11240	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CYJ15_11280	COG2329	Antibiotic biosynthesis monooxygenase
CYJ15_11295	COG1695	Transcriptional regulator
CYJ15_11315	COG0431	NADPH-dependent FMN reductase
CYJ15_11345	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CYJ15_11350	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CYJ15_11355	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CYJ15_11365	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CYJ15_11375	COG1484	DNA-dependent DNA replication
CYJ15_11380	COG3611	Membrane attachment protein
CYJ15_11385	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CYJ15_11390	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CYJ15_11395	COG0237	dephospho-CoA kinase activity
CYJ15_11400	COG1971	Probably functions as a manganese efflux pump
CYJ15_11405	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CYJ15_11410	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CYJ15_11410	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CYJ15_11415	COG0039	L-malate dehydrogenase activity
CYJ15_11420	COG0538	isocitrate dehydrogenase activity
CYJ15_11425	COG0372	Belongs to the citrate synthase family
CYJ15_11430	COG2707	UPF0756 membrane protein
CYJ15_11435	COG0628	permease
CYJ15_11445	COG0205	6-phosphofructokinase activity
CYJ15_11450	COG0825	malonyl-CoA metabolic process
CYJ15_11455	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CYJ15_11460	COG0281	malic enzyme
CYJ15_11465	COG0587	DNA-directed DNA polymerase activity
CYJ15_11480	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CYJ15_11490	COG4109	DRTGG domain
CYJ15_11495	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CYJ15_11500	COG0006	proline dipeptidase activity
CYJ15_11510	COG0589	response to stress
CYJ15_11520	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CYJ15_11525	COG0827	DNA restriction-modification system
CYJ15_11530	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CYJ15_11535	COG3874	Sporulation protein YtfJ
CYJ15_11545	COG1714	RDD family
CYJ15_11550	COG0616	signal peptide processing
CYJ15_11555	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CYJ15_11565	COG0301	tRNA thio-modification
CYJ15_11570	COG1104	cysteine desulfurase activity
CYJ15_11575	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
CYJ15_11580	COG1309	transcriptional regulator
CYJ15_11585	COG1956	GAF domain-containing protein
CYJ15_11590	COG2203	Gaf domain
CYJ15_11590	COG2199	diguanylate cyclase activity
CYJ15_11595	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CYJ15_11605	COG0506	proline dehydrogenase activity
CYJ15_11610	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_11615	COG3290	protein histidine kinase activity
CYJ15_11615	COG3829	transcription factor binding
CYJ15_11625	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CYJ15_11630	COG3383	formate dehydrogenase (NAD+) activity
CYJ15_11635	COG2427	Protein of unknown function (DUF1641)
CYJ15_11640	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CYJ15_11645	COG0315	cyclic pyranopterin monophosphate synthase activity
CYJ15_11650	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CYJ15_11655	COG0314	molybdopterin synthase activity
CYJ15_11660	COG1763	Mo-molybdopterin cofactor biosynthetic process
CYJ15_11665	COG0303	'Molybdopterin
CYJ15_11680	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CYJ15_11685	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CYJ15_11690	COG4149	molybdate abc transporter
CYJ15_11700	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CYJ15_11705	COG0454	-acetyltransferase
CYJ15_11710	COG0517	IMP dehydrogenase activity
CYJ15_11715	COG0123	including yeast histone deacetylase and acetoin utilization protein
CYJ15_11725	COG1605	Chorismate mutase
CYJ15_11725	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CYJ15_11730	COG4980	gas vesicle protein
CYJ15_11740	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CYJ15_11745	COG1674	ftsk spoiiie
CYJ15_11755	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CYJ15_11760	COG4848	Belongs to the UPF0354 family
CYJ15_11765	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CYJ15_11770	COG2208	phosphoserine phosphatase activity
CYJ15_11775	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CYJ15_11785	COG5002	protein histidine kinase activity
CYJ15_11785	COG0784	Response regulator, receiver
CYJ15_11820	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
CYJ15_11825	COG1363	Peptidase, m42
CYJ15_11830	COG5584	Small secreted protein
CYJ15_11835	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CYJ15_11840	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CYJ15_11850	COG0510	thiamine kinase activity
CYJ15_11875	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CYJ15_11890	COG1349	DNA-binding transcription factor activity
CYJ15_11895	COG2244	polysaccharide biosynthetic process
CYJ15_11915	COG0495	leucyl-tRNA aminoacylation
CYJ15_11920	COG2814	Major facilitator Superfamily
CYJ15_11935	COG0275	rRNA processing
CYJ15_11950	COG2267	carboxylic ester hydrolase activity
CYJ15_11955	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CYJ15_11960	COG0367	asparagine synthase
CYJ15_11965	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CYJ15_11970	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CYJ15_11980	COG1506	peptidase
CYJ15_11985	COG0655	NAD(P)H dehydrogenase (quinone) activity
CYJ15_11995	COG1070	Carbohydrate kinase
CYJ15_12005	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CYJ15_12010	COG1116	anion transmembrane transporter activity
CYJ15_12015	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CYJ15_12030	COG0783	Belongs to the Dps family
CYJ15_12035	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CYJ15_12045	COG0803	Belongs to the bacterial solute-binding protein 9 family
CYJ15_12055	COG4948	Mandelate Racemase Muconate Lactonizing
CYJ15_12060	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_12065	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CYJ15_12070	COG0596	Alpha beta hydrolase
CYJ15_12075	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
CYJ15_12080	COG1169	isochorismate synthase
CYJ15_12085	COG1575	Belongs to the MenA family. Type 1 subfamily
CYJ15_12215	COG0577	efflux transmembrane transporter activity
CYJ15_12215	COG1136	(ABC) transporter
CYJ15_12255	COG1285	pathogenesis
CYJ15_12275	COG2217	Heavy metal translocating P-type atpase
CYJ15_12280	COG2608	mercury ion transmembrane transporter activity
CYJ15_12305	COG1937	Protein conserved in bacteria
CYJ15_12310	COG1522	sequence-specific DNA binding
CYJ15_12335	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CYJ15_12360	COG5002	protein histidine kinase activity
CYJ15_12365	COG0745	RESPONSE REGULATOR receiver
CYJ15_12370	COG1388	LysM domain
CYJ15_12375	COG4221	oxidoreductase activity
CYJ15_12385	COG0726	polysaccharide deacetylase
CYJ15_12400	COG0038	chloride channel
CYJ15_12410	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CYJ15_12410	COG0425	Belongs to the sulfur carrier protein TusA family
CYJ15_12415	COG1937	Protein conserved in bacteria
CYJ15_12420	COG1525	nuclease
CYJ15_12425	COG2190	(PTS) system
CYJ15_12450	COG0235	Class ii aldolase
CYJ15_12455	COG2160	L-arabinose isomerase activity
CYJ15_12460	COG1609	Transcriptional regulator
CYJ15_12465	COG4213	ABC transporter substrate-binding protein
CYJ15_12475	COG4214	carbohydrate transport
CYJ15_12480	COG2160	L-arabinose isomerase activity
CYJ15_12490	COG1609	Transcriptional regulator
CYJ15_12495	COG0840	transmembrane signaling receptor activity
CYJ15_12510	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_12515	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
CYJ15_12530	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_12550	COG2333	competence protein COMEC
CYJ15_12550	COG0658	competence protein
CYJ15_12605	COG0584	glycerophosphoryl diester phosphodiesterase
CYJ15_12710	COG5484	DNA packaging
CYJ15_12740	COG0175	sulfate reduction
CYJ15_12815	COG3723	Recombinational DNA repair protein, rece pathway
CYJ15_12820	COG5377	YqaJ viral recombinase family
CYJ15_12855	COG3617	BRO family, N-terminal domain
CYJ15_12880	COG1525	nuclease
CYJ15_12895	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CYJ15_12905	COG2155	Conserved Protein
CYJ15_12920	COG1098	S1 RNA binding domain
CYJ15_12940	COG0656	L-ascorbic acid biosynthetic process
CYJ15_12960	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CYJ15_12990	COG2814	Major facilitator Superfamily
CYJ15_12995	COG2050	protein possibly involved in aromatic compounds catabolism
CYJ15_13010	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CYJ15_13020	COG0697	spore germination
CYJ15_13030	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CYJ15_13035	COG3584	3D domain protein
CYJ15_13045	COG1252	NADH dehydrogenase
CYJ15_13060	COG0492	ferredoxin-NADP+ reductase activity
CYJ15_13085	COG0316	Belongs to the HesB IscA family
CYJ15_13090	COG4837	Protein of unknown function (DUF1462)
CYJ15_13095	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CYJ15_13100	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CYJ15_13105	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CYJ15_13110	COG0647	UMP catabolic process
CYJ15_13115	COG2445	Protein of unknown function DUF86
CYJ15_13120	COG4470	Protein conserved in bacteria
CYJ15_13125	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CYJ15_13130	COG0739	heme binding
CYJ15_13140	COG3377	Domain of unknown function (DUF1805)
CYJ15_13145	COG0737	Belongs to the 5'-nucleotidase family
CYJ15_13150	COG0719	Fe-S assembly protein
CYJ15_13155	COG0822	iron-sulfur transferase activity
CYJ15_13160	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CYJ15_13165	COG0719	Fe-S assembly protein
CYJ15_13170	COG0396	ATPase activity
CYJ15_13185	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CYJ15_13190	COG0509	glycine decarboxylation via glycine cleavage system
CYJ15_13195	COG1393	Belongs to the ArsC family
CYJ15_13200	COG1960	acyl-CoA dehydrogenase activity
CYJ15_13205	COG0183	Belongs to the thiolase family
CYJ15_13210	COG1024	Enoyl-CoA hydratase
CYJ15_13210	COG1250	3-hydroxyacyl-CoA dehydrogenase
CYJ15_13225	COG5577	PFAM Coat F domain
CYJ15_13230	COG0772	Belongs to the SEDS family
CYJ15_13235	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CYJ15_13245	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CYJ15_13260	COG2200	EAL domain
CYJ15_13260	COG2199	diguanylate cyclase activity
CYJ15_13260	COG2202	Pas domain
CYJ15_13265	COG0753	catalase activity
CYJ15_13270	COG0671	phosphoesterase, PA-phosphatase related
CYJ15_13280	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CYJ15_13300	COG1595	DNA-templated transcription, initiation
CYJ15_13305	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CYJ15_13320	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CYJ15_13335	COG2610	gluconate transmembrane transporter activity
CYJ15_13340	COG1312	Catalyzes the dehydration of D-mannonate
CYJ15_13345	COG0246	Mannitol dehydrogenase
CYJ15_13350	COG2721	sulfolactate sulfo-lyase activity
CYJ15_13355	COG0246	Mannitol dehydrogenase
CYJ15_13365	COG0800	Aldolase
CYJ15_13370	COG1414	Transcriptional regulator
CYJ15_13440	COG0557	exoribonuclease II activity
CYJ15_13445	COG1647	Serine aminopeptidase, S33
CYJ15_13450	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CYJ15_13455	COG0148	phosphopyruvate hydratase activity
CYJ15_13460	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CYJ15_13470	COG0126	phosphoglycerate kinase activity
CYJ15_13490	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CYJ15_13505	COG3383	formate dehydrogenase (NAD+) activity
CYJ15_13515	COG0840	transmembrane signaling receptor activity
CYJ15_13545	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CYJ15_13560	COG4608	Belongs to the ABC transporter superfamily
CYJ15_13565	COG0791	NLP P60 protein
CYJ15_13570	COG4166	transmembrane transport
CYJ15_13575	COG0444	Belongs to the ABC transporter superfamily
CYJ15_13580	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CYJ15_13585	COG0601	transmembrane transport
CYJ15_13590	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CYJ15_13600	COG0598	Magnesium transport protein CorA
CYJ15_13615	COG2719	SpoVR family
CYJ15_13620	COG3594	Acyltransferase
CYJ15_13645	COG1392	Phosphate transport regulator
CYJ15_13650	COG0306	phosphate transporter
CYJ15_13665	COG2718	Belongs to the UPF0229 family
CYJ15_13670	COG2766	serine protein kinase
CYJ15_13685	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CYJ15_13700	COG2095	MarC family integral membrane protein
CYJ15_13715	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
CYJ15_13720	COG0596	Alpha beta hydrolase
CYJ15_13725	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYJ15_13730	COG0765	amino acid transport
CYJ15_13735	COG1126	abc transporter atp-binding protein
CYJ15_13740	COG2116	formate transmembrane transporter activity
CYJ15_13765	COG1882	Formate acetyltransferase
CYJ15_13770	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CYJ15_13775	COG0431	NADPH-dependent FMN reductase
CYJ15_13790	COG1131	(ABC) transporter
CYJ15_13820	COG0745	RESPONSE REGULATOR receiver
CYJ15_13825	COG5002	protein histidine kinase activity
CYJ15_13825	COG3850	Histidine kinase
CYJ15_13835	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CYJ15_13845	COG1131	(ABC) transporter
CYJ15_13850	COG4555	ABC transporter
CYJ15_13860	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CYJ15_13865	COG1846	Transcriptional regulator
CYJ15_13885	COG1136	(ABC) transporter
CYJ15_13885	COG0577	efflux transmembrane transporter activity
CYJ15_13905	COG2271	Major facilitator Superfamily
CYJ15_13910	COG0697	spore germination
CYJ15_13930	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CYJ15_13935	COG2323	membrane
CYJ15_14040	COG3527	Alpha-acetolactate decarboxylase
CYJ15_14045	COG0028	Belongs to the TPP enzyme family
CYJ15_14050	COG0583	DNA-binding transcription factor activity
CYJ15_14055	COG0735	belongs to the Fur family
CYJ15_14070	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CYJ15_14075	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CYJ15_14080	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CYJ15_14085	COG1116	anion transmembrane transporter activity
CYJ15_14090	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CYJ15_14095	COG2814	Major facilitator Superfamily
CYJ15_14125	COG1737	Transcriptional regulator
CYJ15_14130	COG1263	PTS System
CYJ15_14130	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_14135	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
CYJ15_14145	COG1132	(ABC) transporter
CYJ15_14150	COG3557	Belongs to the UPF0374 family
CYJ15_14165	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_14170	COG0583	DNA-binding transcription factor activity
CYJ15_14175	COG0069	glutamate synthase activity
CYJ15_14175	COG0067	glutamate synthase
CYJ15_14175	COG0070	glutamate synthase
CYJ15_14180	COG0493	'glutamate synthase
CYJ15_14205	COG1988	membrane-bound metal-dependent
CYJ15_14210	COG1194	a g-specific adenine glycosylase
CYJ15_14240	COG0159	tryptophan synthase activity
CYJ15_14250	COG0133	tryptophan synthase activity
CYJ15_14255	COG0134	indole-3-glycerol-phosphate synthase activity
CYJ15_14265	COG0512	Glutamine amidotransferase of anthranilate synthase
CYJ15_14265	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CYJ15_14275	COG0577	efflux transmembrane transporter activity
CYJ15_14280	COG1136	(ABC) transporter
CYJ15_14280	COG0577	efflux transmembrane transporter activity
CYJ15_14285	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CYJ15_14305	COG1131	(ABC) transporter
CYJ15_14345	COG2197	response regulator
CYJ15_14350	COG4585	Histidine kinase
CYJ15_14360	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_14360	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_14370	COG0058	SHG alpha-glucan phosphorylase activity
CYJ15_14375	COG0840	transmembrane signaling receptor activity
CYJ15_14380	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CYJ15_14385	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CYJ15_14390	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CYJ15_14405	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CYJ15_14410	COG0066	3-isopropylmalate dehydratase activity
CYJ15_14415	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CYJ15_14425	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CYJ15_14430	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CYJ15_14435	COG0440	acetolactate synthase activity
CYJ15_14440	COG0028	Belongs to the TPP enzyme family
CYJ15_14445	COG0129	dihydroxy-acid dehydratase activity
CYJ15_14455	COG1114	Component of the transport system for branched-chain amino acids
CYJ15_14460	COG1366	Belongs to the anti-sigma-factor antagonist family
CYJ15_14470	COG2124	cytochrome p450
CYJ15_14475	COG0670	Belongs to the BI1 family
CYJ15_14485	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CYJ15_14490	COG2223	nitrite transmembrane transporter activity
CYJ15_14495	COG3279	Response regulator of the LytR AlgR family
CYJ15_14500	COG3275	phosphorelay sensor kinase activity
CYJ15_14505	COG0252	asparaginase activity
CYJ15_14510	COG2132	Multicopper oxidase
CYJ15_14515	COG1309	transcriptional regulator
CYJ15_14520	COG1511	domain protein
CYJ15_14550	COG5278	phosphoserine phosphatase activity
CYJ15_14550	COG0840	transmembrane signaling receptor activity
CYJ15_14555	COG3739	integral membrane protein
CYJ15_14560	COG3655	Transcriptional regulator
CYJ15_14575	COG1823	symporter activity
CYJ15_14580	COG2839	Protein conserved in bacteria
CYJ15_14600	COG3478	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
CYJ15_14605	COG0477	Major facilitator Superfamily
CYJ15_14615	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CYJ15_14620	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CYJ15_14625	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CYJ15_14630	COG0840	transmembrane signaling receptor activity
CYJ15_14650	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CYJ15_14655	COG1132	(ABC) transporter
CYJ15_14660	COG1846	Transcriptional regulator
CYJ15_14670	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CYJ15_14675	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CYJ15_14700	COG0387	Pfam Sodium calcium exchanger
CYJ15_14705	COG0477	Major facilitator Superfamily
CYJ15_14710	COG1295	ribonuclease BN
CYJ15_14715	COG4840	Belongs to the UPF0435 family
CYJ15_14720	COG0024	Methionine aminopeptidase
CYJ15_14725	COG0693	protein deglycase activity
CYJ15_14730	COG1360	Flagellar Motor Protein
CYJ15_14735	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CYJ15_14745	COG3189	MarR family transcriptional regulator
CYJ15_14755	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CYJ15_14760	COG1607	acyl-coa hydrolase
CYJ15_14765	COG1077	Cell shape determining protein MreB Mrl
CYJ15_14770	COG2268	Band 7 protein
CYJ15_14775	COG1585	Membrane protein implicated in regulation of membrane protease activity
CYJ15_14780	COG0626	cystathionine gamma-synthase activity
CYJ15_14785	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CYJ15_14790	COG1854	S-ribosylhomocysteine lyase activity
CYJ15_14795	COG2226	methyltransferase
CYJ15_14800	COG0288	reversible hydration of carbon dioxide
CYJ15_14805	COG0860	N-Acetylmuramoyl-L-alanine amidase
CYJ15_14815	COG2197	response regulator
CYJ15_14835	COG4086	secreted protein
CYJ15_14840	COG0737	Belongs to the 5'-nucleotidase family
CYJ15_14855	COG3620	sequence-specific DNA binding
CYJ15_14870	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CYJ15_14875	COG1518	maintenance of DNA repeat elements
CYJ15_14910	COG0778	Nitroreductase
CYJ15_14920	COG1304	FMN binding
CYJ15_14930	COG0166	Belongs to the GPI family
CYJ15_14935	COG0025	NhaP-type Na H and K H
CYJ15_14940	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CYJ15_14940	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CYJ15_14940	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CYJ15_14945	COG1349	DNA-binding transcription factor activity
CYJ15_14950	COG0371	Dehydrogenase
CYJ15_14975	COG0561	phosphatase activity
CYJ15_14990	COG2814	Major facilitator Superfamily
CYJ15_14995	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CYJ15_15010	COG2357	RelA SpoT domain protein
CYJ15_15015	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CYJ15_15020	COG0667	Aldo Keto reductase
CYJ15_15030	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
CYJ15_15035	COG1461	Dihydroxyacetone kinase
CYJ15_15040	COG2376	Dihydroxyacetone kinase
CYJ15_15110	COG0778	Nitroreductase
CYJ15_15115	COG1113	amino acid transport
CYJ15_15120	COG0730	response to heat
CYJ15_15125	COG2233	PERMEase
CYJ15_15130	COG0210	DNA helicase
CYJ15_15135	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CYJ15_15160	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CYJ15_15165	COG1024	Enoyl-CoA hydratase
CYJ15_15175	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CYJ15_15180	COG0511	ligase activity, forming carbon-carbon bonds
CYJ15_15185	COG0439	Biotin carboxylase
CYJ15_15190	COG1960	acyl-CoA dehydrogenase activity
CYJ15_15195	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CYJ15_15210	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CYJ15_15215	COG3829	transcription factor binding
CYJ15_15240	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CYJ15_15245	COG0833	amino acid
CYJ15_15250	COG1309	transcriptional regulator
CYJ15_15280	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CYJ15_15285	COG1140	nitrate reductase beta subunit
CYJ15_15295	COG2181	nitrate reductase activity
CYJ15_15300	COG2223	nitrite transmembrane transporter activity
CYJ15_15305	COG3588	fructose-bisphosphate aldolase
CYJ15_15345	COG4268	DNA restriction-modification system
CYJ15_15350	COG1401	restriction endodeoxyribonuclease activity
CYJ15_15355	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CYJ15_15405	COG0583	DNA-binding transcription factor activity
CYJ15_15410	COG0431	NADPH-dependent FMN reductase
CYJ15_15415	COG0454	-acetyltransferase
CYJ15_15420	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYJ15_15425	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYJ15_15430	COG0765	amino acid transport
CYJ15_15435	COG0765	amino acid transport
CYJ15_15440	COG1126	abc transporter atp-binding protein
CYJ15_15445	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CYJ15_15450	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CYJ15_15455	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CYJ15_15460	COG1280	lysine exporter protein (LysE YggA)
CYJ15_15465	COG0386	Belongs to the glutathione peroxidase family
CYJ15_15470	COG2190	(PTS) system
CYJ15_15480	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_15480	COG1263	PTS System
CYJ15_15485	COG0517	IMP dehydrogenase activity
CYJ15_15485	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CYJ15_15495	COG0281	malic enzyme
CYJ15_15515	COG1301	dicarboxylic acid transport
CYJ15_15525	COG1328	CTP reductase activity
CYJ15_15535	COG1063	alcohol dehydrogenase
CYJ15_15545	COG1929	Belongs to the glycerate kinase type-1 family
CYJ15_15550	COG2610	gluconate transmembrane transporter activity
CYJ15_15555	COG1879	ABC-type sugar transport system periplasmic component
CYJ15_15560	COG1172	Belongs to the binding-protein-dependent transport system permease family
CYJ15_15565	COG1129	ABC transporter
CYJ15_15570	COG1869	D-ribose catabolic process
CYJ15_15575	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CYJ15_15580	COG1609	Transcriptional regulator
CYJ15_15620	COG4549	nuclear export factor GLE1
CYJ15_15625	COG1276	copper resistance
CYJ15_15625	COG2372	response to copper ion
CYJ15_15635	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CYJ15_15640	COG1609	Transcriptional regulator
CYJ15_15655	COG5002	protein histidine kinase activity
CYJ15_15660	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CYJ15_15665	COG1278	Cold shock
CYJ15_15670	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CYJ15_15675	COG0697	spore germination
CYJ15_15690	COG0697	spore germination
CYJ15_15695	COG1472	Belongs to the glycosyl hydrolase 3 family
CYJ15_15720	COG1132	(ABC) transporter
CYJ15_15725	COG1132	(ABC) transporter
CYJ15_15745	COG0791	NLP P60 protein
CYJ15_15745	COG1388	LysM domain
CYJ15_15765	COG2272	Belongs to the type-B carboxylesterase lipase family
CYJ15_15770	COG0154	amidase activity
CYJ15_15775	COG2814	Major facilitator Superfamily
CYJ15_15780	COG1012	belongs to the aldehyde dehydrogenase family
CYJ15_15820	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CYJ15_15820	COG3153	acetyltransferase
CYJ15_15825	COG5583	Uncharacterized small protein (DUF2292)
CYJ15_15830	COG0431	NADPH-dependent FMN reductase
CYJ15_15835	COG1116	anion transmembrane transporter activity
CYJ15_15840	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CYJ15_15845	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CYJ15_15850	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CYJ15_15870	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CYJ15_15885	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
CYJ15_15895	COG2390	Transcriptional regulator
CYJ15_15905	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CYJ15_15915	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
CYJ15_15930	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CYJ15_15935	COG1984	allophanate hydrolase subunit 2
CYJ15_15940	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CYJ15_15945	COG2814	Major facilitator Superfamily
CYJ15_15950	COG1764	response to oxidative stress
CYJ15_15955	COG1126	abc transporter atp-binding protein
CYJ15_15960	COG0765	amino acid transport
CYJ15_15965	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYJ15_15975	COG0326	Molecular chaperone. Has ATPase activity
CYJ15_16035	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CYJ15_16050	COG1064	alcohol dehydrogenase
CYJ15_16080	COG2814	Major facilitator Superfamily
CYJ15_16085	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_16145	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CYJ15_16150	COG1597	lipid kinase activity
CYJ15_16175	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CYJ15_16180	COG0154	amidase activity
CYJ15_16185	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CYJ15_16190	COG2224	Isocitrate lyase
CYJ15_16195	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CYJ15_16200	COG4851	CamS sex pheromone cAM373 precursor
CYJ15_16210	COG0210	DNA helicase
CYJ15_16215	COG0210	DNA helicase
CYJ15_16220	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
CYJ15_16225	COG4496	protein, YerC YecD
CYJ15_16230	COG1470	cell adhesion involved in biofilm formation
CYJ15_16245	COG0151	Belongs to the GarS family
CYJ15_16250	COG0138	bifunctional purine biosynthesis protein purh
CYJ15_16255	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CYJ15_16260	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CYJ15_16265	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CYJ15_16270	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CYJ15_16275	COG0047	phosphoribosylformylglycinamidine synthase activity
CYJ15_16280	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CYJ15_16290	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CYJ15_16295	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CYJ15_16300	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CYJ15_16310	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
CYJ15_16315	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CYJ15_16320	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_16320	COG2190	(PTS) system
CYJ15_16320	COG1263	PTS System
CYJ15_16335	COG1263	PTS System
CYJ15_16335	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CYJ15_16360	COG1301	dicarboxylic acid transport
CYJ15_16370	COG3711	transcriptional antiterminator
CYJ15_16375	COG2252	PERMEase
CYJ15_16385	COG1132	(ABC) transporter
CYJ15_16390	COG2814	Major facilitator Superfamily
CYJ15_16395	COG2197	response regulator
CYJ15_16400	COG3850	Histidine kinase
CYJ15_16405	COG1131	(ABC) transporter
CYJ15_16415	COG0842	Transport permease protein
CYJ15_16450	COG0824	Thioesterase
CYJ15_16455	COG0318	PFAM AMP-dependent synthetase and ligase
CYJ15_16460	COG0183	Belongs to the thiolase family
CYJ15_16465	COG1024	Enoyl-CoA hydratase
CYJ15_16470	COG1250	3-hydroxyacyl-CoA dehydrogenase
CYJ15_16480	COG2814	Major facilitator Superfamily
CYJ15_16490	COG0179	Fumarylacetoacetate (FAA) hydrolase
CYJ15_16500	COG0471	metal ion transport
CYJ15_16525	COG1131	(ABC) transporter
CYJ15_16530	COG1725	Transcriptional regulator
CYJ15_16535	COG1695	Transcriptional regulator
CYJ15_16540	COG3479	Phenolic acid decarboxylase
CYJ15_16545	COG2910	NAD(P)H-binding
CYJ15_16550	COG1959	2 iron, 2 sulfur cluster binding
CYJ15_16585	COG0425	Belongs to the sulfur carrier protein TusA family
CYJ15_16590	COG2391	methyltransferase activity
CYJ15_16600	COG1028	Short-chain dehydrogenase reductase Sdr
CYJ15_16620	COG1120	ATPase activity
CYJ15_16625	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CYJ15_16660	COG3620	sequence-specific DNA binding
CYJ15_16675	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CYJ15_16675	COG0519	Catalyzes the synthesis of GMP from XMP
CYJ15_16680	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CYJ15_16685	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CYJ15_16690	COG1335	isochorismatase
CYJ15_16695	COG4948	Mandelate Racemase Muconate Lactonizing
CYJ15_16705	COG0463	Glycosyl transferase, family 2
CYJ15_16710	COG2246	polysaccharide biosynthetic process
CYJ15_16715	COG0459	protein refolding
CYJ15_16720	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CYJ15_16725	COG1266	CAAX protease self-immunity
CYJ15_16735	COG0805	protein transport
CYJ15_16740	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CYJ15_16745	COG0488	(ABC) transporter
CYJ15_16760	COG0456	acetyltransferase
CYJ15_16765	COG1214	PFAM Peptidase M22, glycoprotease
CYJ15_16770	COG0802	atpase or kinase
CYJ15_16855	COG3091	SprT-like family
CYJ15_16865	COG2183	response to ionizing radiation
CYJ15_16870	COG2208	phosphoserine phosphatase activity
CYJ15_16875	COG1191	sigma factor activity
CYJ15_16880	COG2172	sigma factor antagonist activity
CYJ15_16885	COG1366	Belongs to the anti-sigma-factor antagonist family
CYJ15_16890	COG2208	phosphoserine phosphatase activity
CYJ15_16895	COG2172	sigma factor antagonist activity
CYJ15_16900	COG1366	Belongs to the anti-sigma-factor antagonist family
CYJ15_16905	COG1366	Belongs to the anti-sigma-factor antagonist family
CYJ15_16915	COG2337	Toxic component of a toxin-antitoxin (TA) module
CYJ15_16920	COG0864	Transcriptional regulator
CYJ15_16930	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CYJ15_16935	COG0736	holo-[acyl-carrier-protein] synthase activity
CYJ15_16940	COG0705	Rhomboid family
CYJ15_16945	COG0513	Belongs to the DEAD box helicase family
CYJ15_16950	COG0531	amino acid
CYJ15_16975	COG1280	lysine exporter protein (LysE YggA)
CYJ15_16985	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CYJ15_16990	COG1609	Transcriptional regulator
CYJ15_17005	COG2182	Extracellular solute-binding protein
CYJ15_17010	COG1175	transmembrane transport
CYJ15_17015	COG3833	ABC-type maltose transport systems, permease component
CYJ15_17025	COG1554	hydrolase, family 65, central catalytic
CYJ15_17035	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CYJ15_17040	COG1181	Belongs to the D-alanine--D-alanine ligase family
CYJ15_17055	COG1253	flavin adenine dinucleotide binding
CYJ15_17060	COG0789	Transcriptional regulator
CYJ15_17065	COG1253	flavin adenine dinucleotide binding
CYJ15_17080	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CYJ15_17095	COG0629	single-stranded DNA binding
CYJ15_17100	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CYJ15_17105	COG4786	Flagellar basal body rod
CYJ15_17110	COG4786	Flagellar basal body rod
CYJ15_17115	COG1077	Cell shape determining protein MreB Mrl
CYJ15_17120	COG1609	Transcriptional regulator
CYJ15_17125	COG0739	heme binding
CYJ15_17130	COG2385	sporulation resulting in formation of a cellular spore
CYJ15_17140	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CYJ15_17150	COG4836	Membrane
CYJ15_17155	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CYJ15_17160	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CYJ15_17165	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CYJ15_17170	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CYJ15_17175	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CYJ15_17185	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CYJ15_17190	COG0356	it plays a direct role in the translocation of protons across the membrane
CYJ15_17200	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CYJ15_17210	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CYJ15_17220	COG0698	ribose 5-phosphate isomerase
CYJ15_17240	COG1971	Probably functions as a manganese efflux pump
CYJ15_17245	COG0009	L-threonylcarbamoyladenylate synthase
CYJ15_17260	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CYJ15_17270	COG1435	thymidine kinase activity
CYJ15_17275	COG0254	rRNA binding
CYJ15_17280	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CYJ15_17285	COG1494	fructose-1,6-bisphosphatase
CYJ15_17290	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CYJ15_17295	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CYJ15_17300	COG0191	fructose-bisphosphate aldolase activity
CYJ15_17305	COG2204	response regulator
CYJ15_17320	COG1131	(ABC) transporter
CYJ15_17325	COG1725	Transcriptional regulator
CYJ15_17330	COG0504	CTP synthase activity
CYJ15_17335	COG3343	RNA polymerase activity
CYJ15_17345	COG1136	(ABC) transporter
CYJ15_17360	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CYJ15_17360	COG1703	isobutyryl-CoA mutase activity
CYJ15_17360	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CYJ15_17365	COG1309	transcriptional regulator
CYJ15_17370	COG1960	acyl-CoA dehydrogenase activity
CYJ15_17375	COG1960	acyl-CoA dehydrogenase activity
CYJ15_17380	COG0183	Belongs to the thiolase family
CYJ15_17385	COG0247	lactate metabolic process
CYJ15_17385	COG2181	nitrate reductase activity
CYJ15_17390	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CYJ15_17395	COG0018	arginyl-trna synthetase
CYJ15_17405	COG0010	Belongs to the arginase family
CYJ15_17410	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CYJ15_17420	COG1994	Peptidase M50
CYJ15_17430	COG3465	dGTPase activity
CYJ15_17435	COG1078	dGTPase activity
CYJ15_17450	COG0095	Lipoate-protein ligase
CYJ15_17455	COG0280	phosphate acetyltransferase
CYJ15_17470	COG2363	Small membrane protein
CYJ15_17480	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CYJ15_17520	COG4555	ABC transporter
CYJ15_17540	COG1122	ATPase activity
CYJ15_17560	COG0351	phosphomethylpyrimidine kinase
CYJ15_17570	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CYJ15_17575	COG0561	phosphatase activity
CYJ15_17580	COG0514	ATP-dependent DNA helicase (RecQ)
CYJ15_17585	COG1785	Belongs to the alkaline phosphatase family
CYJ15_17590	COG1737	Transcriptional regulator
CYJ15_17600	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CYJ15_17605	COG1346	cytolysis
CYJ15_17610	COG1380	Effector of murein hydrolase LrgA
CYJ15_17615	COG0583	DNA-binding transcription factor activity
CYJ15_17620	COG0367	asparagine synthase
CYJ15_17645	COG2966	Psort location CytoplasmicMembrane, score
CYJ15_17650	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CYJ15_17655	COG1966	Carbon starvation protein
CYJ15_17665	COG3275	phosphorelay sensor kinase activity
CYJ15_17670	COG1464	Belongs to the NlpA lipoprotein family
CYJ15_17675	COG2011	ABC-type metal ion transport system permease component
CYJ15_17680	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CYJ15_17685	COG1119	ATPase activity
CYJ15_17700	COG0534	Mate efflux family protein
CYJ15_17705	COG1442	glycosyl transferase family 8
CYJ15_17710	COG2195	Cleaves the N-terminal amino acid of tripeptides
CYJ15_17720	COG2814	Major facilitator Superfamily
CYJ15_17735	COG0028	Belongs to the TPP enzyme family
CYJ15_17740	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CYJ15_17745	COG1132	(ABC) transporter
CYJ15_17755	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CYJ15_17775	COG2188	Transcriptional regulator
CYJ15_17780	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
CYJ15_17785	COG1366	Belongs to the anti-sigma-factor antagonist family
CYJ15_17790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CYJ15_17800	COG1126	abc transporter atp-binding protein
CYJ15_17825	COG3457	Alanine racemase
CYJ15_17835	COG1126	abc transporter atp-binding protein
CYJ15_17845	COG0765	amino acid transport
CYJ15_17855	COG0579	oxidoreductase
CYJ15_17860	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CYJ15_17865	COG0732	type I restriction modification DNA specificity domain
CYJ15_17870	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CYJ15_17885	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CYJ15_17895	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CYJ15_17900	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CYJ15_17905	COG4853	Protein conserved in bacteria
CYJ15_17910	COG4863	YycH protein
CYJ15_17915	COG5002	protein histidine kinase activity
CYJ15_17920	COG0745	RESPONSE REGULATOR receiver
CYJ15_17935	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CYJ15_17940	COG0305	Participates in initiation and elongation during chromosome replication
CYJ15_17945	COG0359	binds to the 23S rRNA
CYJ15_17950	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CYJ15_17960	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CYJ15_17970	COG0360	Binds together with S18 to 16S ribosomal RNA
CYJ15_17975	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CYJ15_17985	COG0307	riboflavin synthase, alpha
CYJ15_17990	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CYJ15_17990	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CYJ15_17995	COG0012	GTP binding
CYJ15_18000	COG4481	Protein conserved in bacteria
CYJ15_18005	COG0668	transmembrane transport
CYJ15_18020	COG1475	DNA binding
CYJ15_18025	COG1192	Involved in chromosome partitioning
CYJ15_18030	COG1475	DNA binding
CYJ15_18035	COG0357	Ribosomal RNA small subunit methyltransferase G
CYJ15_18040	COG0445	tRNA wobble uridine modification
CYJ15_18045	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CYJ15_18050	COG1847	R3H domain protein
CYJ15_18055	COG0706	membrane insertase activity
CYJ15_18060	COG0594	ribonuclease P activity
CYJ15_18065	COG0230	Belongs to the bacterial ribosomal protein bL34 family