Bcer98_0001 SM00382 ATPases associated with a variety of cellular activities Bcer98_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Bcer98_0002 SM00480 DNA polymerase III beta subunit Bcer98_0005 SM00387 Histidine kinase-like ATPases Bcer98_0005 SM00433 TopoisomeraseII Bcer98_0006 SM00434 DNA Topoisomerase IV Bcer98_0008 SM00116 Domain in cystathionine beta-synthase and other proteins. Bcer98_0008 SM01240 Bcer98_0008 Bcer98_0009 SM00936 Penicillin-binding protein 5, C-terminal domain Bcer98_0018 SM00382 ATPases associated with a variety of cellular activities Bcer98_0020 SM00493 Bcer98_0020 Bcer98_0032 SM00966 SpoVT / AbrB like domain Bcer98_0035 SM00493 Bcer98_0035 Bcer98_0036 SM00650 Ribosomal RNA adenine dimethylases Bcer98_0045 SM01400 Bcer98_0045 Bcer98_0048 SM00487 DEAD-like helicases superfamily Bcer98_0048 SM00490 helicase superfamily c-terminal domain Bcer98_0048 SM00982 Bcer98_0048 Bcer98_0048 SM01058 CarD-like/TRCF domain Bcer98_0049 SM00966 SpoVT / AbrB like domain Bcer98_0052 SM00363 S4 RNA-binding domain Bcer98_0056 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_0057 SM00331 Sigma factor PP2C-like phosphatases Bcer98_0057 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Bcer98_0058 SM00977 TilS substrate C-terminal domain Bcer98_0060 SM00382 ATPases associated with a variety of cellular activities Bcer98_0068 SM00905 Dihydroneopterin aldolase Bcer98_0070 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_0076 SM00382 ATPases associated with a variety of cellular activities Bcer98_0076 SM01086 C-terminal, D2-small domain, of ClpB protein Bcer98_0077 SM00382 ATPases associated with a variety of cellular activities Bcer98_0079 SM00670 Large family of predicted nucleotide-binding domains Bcer98_0084 SM00840 Bcer98_0084 Bcer98_0085 SM00535 Ribonuclease III family Bcer98_0086 SM00967 RNA 2'-O ribose methyltransferase substrate binding Bcer98_0088 SM00421 helix_turn_helix, Lux Regulon Bcer98_0090 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Bcer98_0091 SM00649 Ribosomal protein L11/L12 Bcer98_0097 SM00663 RNA polymerase I subunit A N-terminus Bcer98_0101 SM00838 Elongation factor G C-terminus Bcer98_0101 SM00889 Elongation factor G, domain IV Bcer98_0103 SM01403 Bcer98_0103 Bcer98_0107 SM01382 Bcer98_0107 Bcer98_0107 SM01383 Bcer98_0107 Bcer98_0110 SM00322 K homology RNA-binding domain Bcer98_0114 SM01374 Bcer98_0114 Bcer98_0115 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Bcer98_0127 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_0131 SM00662 RNA polymerases D Bcer98_0133 SM00382 ATPases associated with a variety of cellular activities Bcer98_0134 SM00382 ATPases associated with a variety of cellular activities Bcer98_0140 SM00646 Bcer98_0140 Bcer98_0143 SM01251 Bcer98_0143 Bcer98_0188 SM00382 ATPases associated with a variety of cellular activities Bcer98_0189 SM00382 ATPases associated with a variety of cellular activities Bcer98_0202 SM00563 Phosphate acyltransferases Bcer98_0213 SM00387 Histidine kinase-like ATPases Bcer98_0214 SM00421 helix_turn_helix, Lux Regulon Bcer98_0214 SM00448 cheY-homologous receiver domain Bcer98_0215 SM00382 ATPases associated with a variety of cellular activities Bcer98_0222 SM00382 ATPases associated with a variety of cellular activities Bcer98_0223 SM00382 ATPases associated with a variety of cellular activities Bcer98_0234 SM00487 DEAD-like helicases superfamily Bcer98_0234 SM00490 helicase superfamily c-terminal domain Bcer98_0238 SM01005 Alanine racemase, C-terminal domain Bcer98_0241 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_0241 SM00732 Likely ribonuclease with RNase H fold. Bcer98_0242 SM00731 SprT homologues. Bcer98_0247 SM00382 ATPases associated with a variety of cellular activities Bcer98_0248 SM00881 CoA binding domain Bcer98_0251 SM00883 Chaperonin 10 Kd subunit Bcer98_0255 SM00448 cheY-homologous receiver domain Bcer98_0255 SM00862 Transcriptional regulatory protein, C terminal Bcer98_0256 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0256 SM00387 Histidine kinase-like ATPases Bcer98_0256 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_0262 SM00382 ATPases associated with a variety of cellular activities Bcer98_0263 SM00387 Histidine kinase-like ATPases Bcer98_0263 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_0264 SM00448 cheY-homologous receiver domain Bcer98_0264 SM00862 Transcriptional regulatory protein, C terminal Bcer98_0267 SM01001 AIR carboxylase Bcer98_0269 SM00998 Adenylosuccinate lyase C-terminus Bcer98_0272 SM01211 Bcer98_0272 Bcer98_0277 SM00798 AICARFT/IMPCHase bienzyme Bcer98_0277 SM00851 MGS-like domain Bcer98_0278 SM01209 Bcer98_0278 Bcer98_0278 SM01210 Bcer98_0278 Bcer98_0282 SM00244 prohibitin homologues Bcer98_0286 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Bcer98_0286 SM00292 breast cancer carboxy-terminal domain Bcer98_0286 SM00532 Ligase N family Bcer98_0291 SM00382 ATPases associated with a variety of cellular activities Bcer98_0291 SM00930 Bcer98_0291 Bcer98_0299 SM00845 GatB domain Bcer98_0300 SM00046 Diacylglycerol kinase catalytic domain (presumed) Bcer98_0304 SM00382 ATPases associated with a variety of cellular activities Bcer98_0323 SM00382 ATPases associated with a variety of cellular activities Bcer98_0344 SM00062 Bacterial periplasmic substrate-binding proteins Bcer98_0344 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Bcer98_0345 SM00382 ATPases associated with a variety of cellular activities Bcer98_0346 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_0346 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0352 SM00100 Cyclic nucleotide-monophosphate binding domain Bcer98_0352 SM00419 helix_turn_helix, cAMP Regulatory protein Bcer98_0354 SM00642 Alpha-amylase domain Bcer98_0358 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Bcer98_0358 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Bcer98_0358 SM00493 Bcer98_0358 Bcer98_0361 SM00382 ATPases associated with a variety of cellular activities Bcer98_0367 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_0367 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0372 SM00382 ATPases associated with a variety of cellular activities Bcer98_0373 SM00060 Fibronectin type 3 domain Bcer98_0373 SM00636 Bcer98_0373 Bcer98_0373 SM00637 Bcer98_0373 Bcer98_0382 SM00946 Prolyl-tRNA synthetase, C-terminal Bcer98_0393 SM00226 Low molecular weight phosphatase family Bcer98_0411 SM00478 endonuclease III Bcer98_0420 SM00857 Resolvase, N terminal domain Bcer98_0422 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_0429 SM00984 UDP binding domain Bcer98_0443 SM00478 endonuclease III Bcer98_0443 SM00525 Bcer98_0443 Bcer98_0450 SM00382 ATPases associated with a variety of cellular activities Bcer98_0454 SM00382 ATPases associated with a variety of cellular activities Bcer98_0462 SM00860 SMI1 / KNR4 family Bcer98_0464 SM00028 Tetratricopeptide repeats Bcer98_0468 SM00567 E-Z type HEAT repeats Bcer98_0472 SM00763 PrkA AAA domain Bcer98_0478 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Bcer98_0480 SM00857 Resolvase, N terminal domain Bcer98_0482 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_0484 SM00460 Transglutaminase/protease-like homologues Bcer98_0486 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Bcer98_0488 SM00244 prohibitin homologues Bcer98_0489 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_0489 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0493 SM00248 ankyrin repeats Bcer98_0495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_0495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0495 SM00319 Homologues of the ligand binding domain of Tar Bcer98_0496 SM00091 PAS domain Bcer98_0496 SM00387 Histidine kinase-like ATPases Bcer98_0497 SM00448 cheY-homologous receiver domain Bcer98_0499 SM00919 Malic enzyme, NAD binding domain Bcer98_0499 SM01274 Bcer98_0499 Bcer98_0502 SM00387 Histidine kinase-like ATPases Bcer98_0502 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_0503 SM00448 cheY-homologous receiver domain Bcer98_0503 SM00862 Transcriptional regulatory protein, C terminal Bcer98_0505 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Bcer98_0505 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Bcer98_0508 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_0508 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0509 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Bcer98_0509 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Bcer98_0511 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_0514 SM00028 Tetratricopeptide repeats Bcer98_0514 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_0525 SM01091 Transporter associated domain Bcer98_0529 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_0535 SM00327 von Willebrand factor (vWF) type A domain Bcer98_0536 SM00382 ATPases associated with a variety of cellular activities Bcer98_0540 SM00382 ATPases associated with a variety of cellular activities Bcer98_0541 SM00062 Bacterial periplasmic substrate-binding proteins Bcer98_0541 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Bcer98_0546 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0546 SM00387 Histidine kinase-like ATPases Bcer98_0546 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_0547 SM00448 cheY-homologous receiver domain Bcer98_0547 SM00862 Transcriptional regulatory protein, C terminal Bcer98_0554 SM00382 ATPases associated with a variety of cellular activities Bcer98_0555 SM00382 ATPases associated with a variety of cellular activities Bcer98_0557 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_0559 SM00354 helix_turn _helix lactose operon repressor Bcer98_0562 SM00382 ATPases associated with a variety of cellular activities Bcer98_0567 SM00770 Zinc dependent phospholipase C (alpha toxin) Bcer98_0573 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_0575 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_0602 SM00899 Bcer98_0602 Bcer98_0607 SM00116 Domain in cystathionine beta-synthase and other proteins. Bcer98_0610 SM00287 Bacterial SH3 domain homologues Bcer98_0613 SM00382 ATPases associated with a variety of cellular activities Bcer98_0629 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_0653 SM00382 ATPases associated with a variety of cellular activities Bcer98_0680 SM00344 helix_turn_helix ASNC type Bcer98_0685 SM00382 ATPases associated with a variety of cellular activities Bcer98_0686 SM00382 ATPases associated with a variety of cellular activities Bcer98_0687 SM00062 Bacterial periplasmic substrate-binding proteins Bcer98_0687 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Bcer98_0689 SM00382 ATPases associated with a variety of cellular activities Bcer98_0697 SM00421 helix_turn_helix, Lux Regulon Bcer98_0697 SM00448 cheY-homologous receiver domain Bcer98_0706 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_0711 SM00957 SecA DEAD-like domain Bcer98_0711 SM00958 SecA preprotein cross-linking domain Bcer98_0714 SM00635 Bacterial Ig-like domain 2 Bcer98_0724 SM00646 Bcer98_0724 Bcer98_0725 SM00646 Bcer98_0725 Bcer98_0738 SM00857 Resolvase, N terminal domain Bcer98_0742 SM00857 Resolvase, N terminal domain Bcer98_0747 SM00028 Tetratricopeptide repeats Bcer98_0751 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_0759 SM00487 DEAD-like helicases superfamily Bcer98_0759 SM00490 helicase superfamily c-terminal domain Bcer98_0762 SM00382 ATPases associated with a variety of cellular activities Bcer98_0765 SM01329 Bcer98_0765 Bcer98_0768 SM00829 Enoylreductase Bcer98_0783 SM01061 CAT RNA binding domain Bcer98_0787 SM01120 Bcer98_0787 Bcer98_0796 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_0799 SM00382 ATPases associated with a variety of cellular activities Bcer98_0801 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0801 SM00387 Histidine kinase-like ATPases Bcer98_0801 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_0802 SM00448 cheY-homologous receiver domain Bcer98_0802 SM00862 Transcriptional regulatory protein, C terminal Bcer98_0812 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_0815 SM00382 ATPases associated with a variety of cellular activities Bcer98_0837 SM00354 helix_turn _helix lactose operon repressor Bcer98_0838 SM00849 Metallo-beta-lactamase superfamily Bcer98_0843 SM00387 Histidine kinase-like ATPases Bcer98_0843 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_0844 SM00448 cheY-homologous receiver domain Bcer98_0844 SM00862 Transcriptional regulatory protein, C terminal Bcer98_0849 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_0849 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_0855 SM00357 Cold shock protein domain Bcer98_0874 SM01060 Bcer98_0874 Bcer98_0875 SM00642 Alpha-amylase domain Bcer98_0877 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_0885 SM00382 ATPases associated with a variety of cellular activities Bcer98_0885 SM01086 C-terminal, D2-small domain, of ClpB protein Bcer98_0891 SM00825 Beta-ketoacyl synthase Bcer98_0899 SM00382 ATPases associated with a variety of cellular activities Bcer98_0900 SM00382 ATPases associated with a variety of cellular activities Bcer98_0907 SM00155 Phospholipase D. Active site motifs. Bcer98_0912 SM01118 Bcer98_0912 Bcer98_0914 SM00954 Region found in RelA / SpoT proteins Bcer98_0948 SM00635 Bacterial Ig-like domain 2 Bcer98_0961 SM00861 Transketolase, pyrimidine binding domain Bcer98_0964 SM01130 Bcer98_0964 Bcer98_0992 SM00028 Tetratricopeptide repeats Bcer98_1003 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_1007 SM00382 ATPases associated with a variety of cellular activities Bcer98_1011 SM00014 Acid phosphatase homologues Bcer98_1021 SM00448 cheY-homologous receiver domain Bcer98_1021 SM00862 Transcriptional regulatory protein, C terminal Bcer98_1022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_1022 SM00387 Histidine kinase-like ATPases Bcer98_1022 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1023 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_1023 SM00895 Bcer98_1023 Bcer98_1043 SM00822 Bcer98_1043 Bcer98_1049 SM00382 ATPases associated with a variety of cellular activities Bcer98_1053 SM00420 helix_turn_helix, Deoxyribose operon repressor Bcer98_1053 SM01134 Bcer98_1053 Bcer98_1055 SM01007 Class II Aldolase and Adducin N-terminal domain Bcer98_1059 SM00387 Histidine kinase-like ATPases Bcer98_1059 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1060 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_1077 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_1078 SM00382 ATPases associated with a variety of cellular activities Bcer98_1080 SM00382 ATPases associated with a variety of cellular activities Bcer98_1084 SM00344 helix_turn_helix ASNC type Bcer98_1112 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_1123 SM00917 LeuA allosteric (dimerisation) domain Bcer98_1124 SM01329 Bcer98_1124 Bcer98_1159 SM00387 Histidine kinase-like ATPases Bcer98_1160 SM00421 helix_turn_helix, Lux Regulon Bcer98_1160 SM00448 cheY-homologous receiver domain Bcer98_1182 SM00387 Histidine kinase-like ATPases Bcer98_1182 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1186 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_1186 SM00387 Histidine kinase-like ATPases Bcer98_1186 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1196 SM00363 S4 RNA-binding domain Bcer98_1200 SM00448 cheY-homologous receiver domain Bcer98_1200 SM00862 Transcriptional regulatory protein, C terminal Bcer98_1201 SM00091 PAS domain Bcer98_1201 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_1201 SM00387 Histidine kinase-like ATPases Bcer98_1201 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1203 SM00257 Lysin motif Bcer98_1208 SM00487 DEAD-like helicases superfamily Bcer98_1208 SM00490 helicase superfamily c-terminal domain Bcer98_1210 SM00257 Lysin motif Bcer98_1212 SM00422 helix_turn_helix, mercury resistance Bcer98_1214 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Bcer98_1216 SM00644 Bcer98_1216 Bcer98_1218 SM00870 Bcer98_1218 Bcer98_1221 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_1233 SM00411 bacterial (prokaryotic) histone like domain Bcer98_1238 SM00562 Bcer98_1238 Bcer98_1243 SM00028 Tetratricopeptide repeats Bcer98_1244 SM00914 Bcer98_1244 Bcer98_1253 SM00986 Uracil DNA glycosylase superfamily Bcer98_1253 SM00987 UreE urease accessory protein, C-terminal domain Bcer98_1257 SM00851 MGS-like domain Bcer98_1265 SM00479 Bcer98_1265 Bcer98_1265 SM00487 DEAD-like helicases superfamily Bcer98_1265 SM00488 Bcer98_1265 Bcer98_1265 SM00491 Bcer98_1265 Bcer98_1270 SM00478 endonuclease III Bcer98_1270 SM00525 Bcer98_1270 Bcer98_1272 SM00060 Fibronectin type 3 domain Bcer98_1282 SM00981 Bcer98_1282 Bcer98_1300 SM00491 Bcer98_1300 Bcer98_1310 SM00450 Rhodanese Homology Domain Bcer98_1316 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Bcer98_1316 SM00475 5'-3' exonuclease Bcer98_1327 SM00357 Cold shock protein domain Bcer98_1333 SM00849 Metallo-beta-lactamase superfamily Bcer98_1342 SM00448 cheY-homologous receiver domain Bcer98_1343 SM00073 Histidine Phosphotransfer domain Bcer98_1343 SM00260 Two component signalling adaptor domain Bcer98_1343 SM00387 Histidine kinase-like ATPases Bcer98_1343 SM01231 Bcer98_1343 Bcer98_1347 SM00138 Methyltransferase, chemotaxis proteins Bcer98_1362 SM00382 ATPases associated with a variety of cellular activities Bcer98_1369 SM00260 Two component signalling adaptor domain Bcer98_1369 SM00448 cheY-homologous receiver domain Bcer98_1372 SM00028 Tetratricopeptide repeats Bcer98_1386 SM00382 ATPases associated with a variety of cellular activities Bcer98_1386 SM00962 SRP54-type protein, GTPase domain Bcer98_1388 SM00382 ATPases associated with a variety of cellular activities Bcer98_1405 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_1411 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_1411 SM00895 Bcer98_1411 Bcer98_1424 SM00487 DEAD-like helicases superfamily Bcer98_1424 SM00490 helicase superfamily c-terminal domain Bcer98_1431 SM00047 Lysozyme subfamily 2 Bcer98_1435 SM00382 ATPases associated with a variety of cellular activities Bcer98_1450 SM00862 Transcriptional regulatory protein, C terminal Bcer98_1464 SM00450 Rhodanese Homology Domain Bcer98_1469 SM01133 Bcer98_1469 Bcer98_1472 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Bcer98_1472 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Bcer98_1472 SM00493 Bcer98_1472 Bcer98_1479 SM00342 helix_turn_helix, arabinose operon control protein Bcer98_1485 SM00833 Cobalamin synthesis protein cobW C-terminal domain Bcer98_1493 SM00287 Bacterial SH3 domain homologues Bcer98_1509 SM00460 Transglutaminase/protease-like homologues Bcer98_1516 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_1516 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_1516 SM00319 Homologues of the ligand binding domain of Tar Bcer98_1524 SM00833 Cobalamin synthesis protein cobW C-terminal domain Bcer98_1543 SM00155 Phospholipase D. Active site motifs. Bcer98_1548 SM01091 Transporter associated domain Bcer98_1560 SM00244 prohibitin homologues Bcer98_1563 SM01005 Alanine racemase, C-terminal domain Bcer98_1567 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_1595 SM00487 DEAD-like helicases superfamily Bcer98_1595 SM00490 helicase superfamily c-terminal domain Bcer98_1602 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_1604 SM00226 Low molecular weight phosphatase family Bcer98_1609 SM00829 Enoylreductase Bcer98_1610 SM00646 Bcer98_1610 Bcer98_1612 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_1613 SM00382 ATPases associated with a variety of cellular activities Bcer98_1616 SM00567 E-Z type HEAT repeats Bcer98_1616 SM00932 Scaffold protein Nfu/NifU N terminal Bcer98_1620 SM00836 DALR anticodon binding domain Bcer98_1620 SM01016 Arginyl tRNA synthetase N terminal dom Bcer98_1634 SM00382 ATPases associated with a variety of cellular activities Bcer98_1643 SM00563 Phosphate acyltransferases Bcer98_1665 SM01350 Bcer98_1665 Bcer98_1678 SM00116 Domain in cystathionine beta-synthase and other proteins. Bcer98_1678 SM01091 Transporter associated domain Bcer98_1680 SM00387 Histidine kinase-like ATPases Bcer98_1680 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1683 SM00882 Coenzyme A transferase Bcer98_1684 SM00882 Coenzyme A transferase Bcer98_1687 SM00382 ATPases associated with a variety of cellular activities Bcer98_1691 SM00857 Resolvase, N terminal domain Bcer98_1698 SM00219 Tyrosine kinase, catalytic domain Bcer98_1699 SM00014 Acid phosphatase homologues Bcer98_1713 SM00014 Acid phosphatase homologues Bcer98_1742 SM00382 ATPases associated with a variety of cellular activities Bcer98_1746 SM00382 ATPases associated with a variety of cellular activities Bcer98_1758 SM00823 Phosphopantetheine attachment site Bcer98_1758 SM00824 Thioesterase Bcer98_1759 SM00923 MbtH-like protein Bcer98_1763 SM00411 bacterial (prokaryotic) histone like domain Bcer98_1767 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Bcer98_1777 SM00357 Cold shock protein domain Bcer98_1781 SM00382 ATPases associated with a variety of cellular activities Bcer98_1782 SM00382 ATPases associated with a variety of cellular activities Bcer98_1783 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_1792 SM00487 DEAD-like helicases superfamily Bcer98_1792 SM00490 helicase superfamily c-terminal domain Bcer98_1793 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_1794 SM00855 Phosphoglycerate mutase family Bcer98_1803 SM00878 Biotin carboxylase C-terminal domain Bcer98_1811 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_1814 SM00387 Histidine kinase-like ATPases Bcer98_1814 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1815 SM00448 cheY-homologous receiver domain Bcer98_1815 SM00862 Transcriptional regulatory protein, C terminal Bcer98_1820 SM00422 helix_turn_helix, mercury resistance Bcer98_1820 SM00871 Bacterial transcription activator, effector binding domain Bcer98_1839 SM00966 SpoVT / AbrB like domain Bcer98_1840 SM00257 Lysin motif Bcer98_1849 SM00465 GIY-YIG type nucleases (URI domain) Bcer98_1870 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_1880 SM00091 PAS domain Bcer98_1880 SM00387 Histidine kinase-like ATPases Bcer98_1880 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_1906 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_1908 SM00116 Domain in cystathionine beta-synthase and other proteins. Bcer98_1908 SM00382 ATPases associated with a variety of cellular activities Bcer98_1919 SM00341 Helicase and RNase D C-terminal Bcer98_1919 SM00487 DEAD-like helicases superfamily Bcer98_1919 SM00490 helicase superfamily c-terminal domain Bcer98_1919 SM00956 Bcer98_1919 Bcer98_1922 SM00028 Tetratricopeptide repeats Bcer98_1924 SM01131 Bcer98_1924 Bcer98_1927 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_1928 SM00829 Enoylreductase Bcer98_1937 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Bcer98_1950 SM00344 helix_turn_helix ASNC type Bcer98_1960 SM00860 SMI1 / KNR4 family Bcer98_1991 SM00849 Metallo-beta-lactamase superfamily Bcer98_1999 SM00062 Bacterial periplasmic substrate-binding proteins Bcer98_2000 SM00382 ATPases associated with a variety of cellular activities Bcer98_2013 SM00382 ATPases associated with a variety of cellular activities Bcer98_2014 SM00830 Chorismate mutase type II Bcer98_2024 SM00487 DEAD-like helicases superfamily Bcer98_2044 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_2053 SM00014 Acid phosphatase homologues Bcer98_2061 SM00797 Allophanate hydrolase subunit 2 Bcer98_2062 SM00796 Allophanate hydrolase subunit 1 Bcer98_2063 SM00346 helix_turn_helix isocitrate lyase regulation Bcer98_2076 SM00984 UDP binding domain Bcer98_2105 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_2114 SM00382 ATPases associated with a variety of cellular activities Bcer98_2122 SM00382 ATPases associated with a variety of cellular activities Bcer98_2125 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_2133 SM00871 Bacterial transcription activator, effector binding domain Bcer98_2138 SM01091 Transporter associated domain Bcer98_2139 SM00422 helix_turn_helix, mercury resistance Bcer98_2151 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_2155 SM00984 UDP binding domain Bcer98_2165 SM00382 ATPases associated with a variety of cellular activities Bcer98_2178 SM00382 ATPases associated with a variety of cellular activities Bcer98_2199 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Bcer98_2199 SM00534 ATPase domain of DNA mismatch repair MUTS family Bcer98_2208 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Bcer98_2208 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_2212 SM00060 Fibronectin type 3 domain Bcer98_2221 SM00357 Cold shock protein domain Bcer98_2246 SM00434 DNA Topoisomerase IV Bcer98_2247 SM00387 Histidine kinase-like ATPases Bcer98_2247 SM00433 TopoisomeraseII Bcer98_2248 SM00881 CoA binding domain Bcer98_2249 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Bcer98_2250 SM00448 cheY-homologous receiver domain Bcer98_2250 SM00862 Transcriptional regulatory protein, C terminal Bcer98_2253 SM01207 Bcer98_2253 Bcer98_2256 SM00257 Lysin motif Bcer98_2256 SM00636 Bcer98_2256 Bcer98_2260 SM00479 Bcer98_2260 Bcer98_2262 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_2272 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Bcer98_2278 SM00028 Tetratricopeptide repeats Bcer98_2303 SM00644 Bcer98_2303 Bcer98_2303 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. Bcer98_2304 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Bcer98_2307 SM00091 PAS domain Bcer98_2307 SM00387 Histidine kinase-like ATPases Bcer98_2307 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_2324 SM00346 helix_turn_helix isocitrate lyase regulation Bcer98_2329 SM00644 Bcer98_2329 Bcer98_2332 SM00382 ATPases associated with a variety of cellular activities Bcer98_2333 SM00382 ATPases associated with a variety of cellular activities Bcer98_2336 SM00861 Transketolase, pyrimidine binding domain Bcer98_2339 SM00382 ATPases associated with a variety of cellular activities Bcer98_2340 SM00062 Bacterial periplasmic substrate-binding proteins Bcer98_2343 SM00857 Resolvase, N terminal domain Bcer98_2360 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_2363 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_2381 SM01230 Bcer98_2381 Bcer98_2382 SM00422 helix_turn_helix, mercury resistance Bcer98_2387 SM00382 ATPases associated with a variety of cellular activities Bcer98_2393 SM00287 Bacterial SH3 domain homologues Bcer98_2396 SM00420 helix_turn_helix, Deoxyribose operon repressor Bcer98_2396 SM01134 Bcer98_2396 Bcer98_2403 SM00411 bacterial (prokaryotic) histone like domain Bcer98_2406 SM00382 ATPases associated with a variety of cellular activities Bcer98_2420 SM00853 MutL C terminal dimerisation domain Bcer98_2420 SM01340 Bcer98_2420 Bcer98_2421 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Bcer98_2421 SM00534 ATPase domain of DNA mismatch repair MUTS family Bcer98_2424 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_2430 SM00322 K homology RNA-binding domain Bcer98_2430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_2431 SM00382 ATPases associated with a variety of cellular activities Bcer98_2432 SM00852 Probable molybdopterin binding domain Bcer98_2442 SM00382 ATPases associated with a variety of cellular activities Bcer98_2444 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_2444 SM00866 Bcer98_2444 Bcer98_2445 SM00382 ATPases associated with a variety of cellular activities Bcer98_2445 SM00843 Bcer98_2445 Bcer98_2449 SM00849 Metallo-beta-lactamase superfamily Bcer98_2451 SM01130 Bcer98_2451 Bcer98_2453 SM00859 Semialdehyde dehydrogenase, NAD binding domain Bcer98_2459 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_2459 SM00322 K homology RNA-binding domain Bcer98_2460 SM01387 Bcer98_2460 Bcer98_2461 SM00904 Riboflavin kinase Bcer98_2468 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_2468 SM00322 K homology RNA-binding domain Bcer98_2470 SM00479 Bcer98_2470 Bcer98_2470 SM00481 DNA polymerase alpha chain like domain Bcer98_2472 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Bcer98_2481 SM00382 ATPases associated with a variety of cellular activities Bcer98_2481 SM01086 C-terminal, D2-small domain, of ClpB protein Bcer98_2485 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Bcer98_2485 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Bcer98_2485 SM00493 Bcer98_2485 Bcer98_2487 SM00881 CoA binding domain Bcer98_2497 SM00382 ATPases associated with a variety of cellular activities Bcer98_2497 SM00962 SRP54-type protein, GTPase domain Bcer98_2497 SM00963 SRP54-type protein, helical bundle domain Bcer98_2499 SM00382 ATPases associated with a variety of cellular activities Bcer98_2499 SM00962 SRP54-type protein, GTPase domain Bcer98_2499 SM00963 SRP54-type protein, helical bundle domain Bcer98_2500 SM00968 SMC proteins Flexible Hinge Domain Bcer98_2501 SM00358 Double-stranded RNA binding motif Bcer98_2501 SM00535 Ribonuclease III family Bcer98_2503 SM00822 Bcer98_2503 Bcer98_2504 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Bcer98_2507 SM00487 DEAD-like helicases superfamily Bcer98_2507 SM00490 helicase superfamily c-terminal domain Bcer98_2508 SM01120 Bcer98_2508 Bcer98_2508 SM01121 Bcer98_2508 Bcer98_2511 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Bcer98_2514 SM00220 Serine/Threonine protein kinases, catalytic domain Bcer98_2514 SM00740 Bcer98_2514 Bcer98_2515 SM00331 Sigma factor PP2C-like phosphatases Bcer98_2515 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Bcer98_2520 SM00487 DEAD-like helicases superfamily Bcer98_2520 SM00490 helicase superfamily c-terminal domain Bcer98_2522 SM01409 Bcer98_2522 Bcer98_2523 SM00072 Guanylate kinase homologues. Bcer98_2526 SM00831 Cation transporter/ATPase, N-terminus Bcer98_2532 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Bcer98_2535 SM00851 MGS-like domain Bcer98_2535 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Bcer98_2535 SM01209 Bcer98_2535 Bcer98_2536 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Bcer98_2541 SM00363 S4 RNA-binding domain Bcer98_2546 SM00363 S4 RNA-binding domain Bcer98_2555 SM00864 Tubulin/FtsZ family, GTPase domain Bcer98_2555 SM00865 Tubulin/FtsZ family, C-terminal domain Bcer98_2556 SM00842 Cell division protein FtsA Bcer98_2565 SM00740 Bcer98_2565 Bcer98_2566 SM00740 Bcer98_2566 Bcer98_2572 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Bcer98_2579 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_2581 SM00644 Bcer98_2581 Bcer98_2598 SM00507 HNH nucleases Bcer98_2624 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_2629 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Bcer98_2637 SM00855 Phosphoglycerate mutase family Bcer98_2649 SM00878 Biotin carboxylase C-terminal domain Bcer98_2653 SM00670 Large family of predicted nucleotide-binding domains Bcer98_2658 SM00838 Elongation factor G C-terminus Bcer98_2673 SM00861 Transketolase, pyrimidine binding domain Bcer98_2679 SM00849 Metallo-beta-lactamase superfamily Bcer98_2691 SM00052 Putative diguanylate phosphodiesterase Bcer98_2700 SM00267 diguanylate cyclase Bcer98_2708 SM00387 Histidine kinase-like ATPases Bcer98_2708 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_2711 SM00354 helix_turn _helix lactose operon repressor Bcer98_2715 SM00642 Alpha-amylase domain Bcer98_2716 SM00642 Alpha-amylase domain Bcer98_2717 SM00382 ATPases associated with a variety of cellular activities Bcer98_2737 SM01007 Class II Aldolase and Adducin N-terminal domain Bcer98_2743 SM00267 diguanylate cyclase Bcer98_2750 SM01061 CAT RNA binding domain Bcer98_2752 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_2752 SM00866 Bcer98_2752 Bcer98_2755 SM00849 Metallo-beta-lactamase superfamily Bcer98_2772 SM00387 Histidine kinase-like ATPases Bcer98_2774 SM00936 Penicillin-binding protein 5, C-terminal domain Bcer98_2775 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_2776 SM00382 ATPases associated with a variety of cellular activities Bcer98_2780 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_2784 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Bcer98_2803 SM00354 helix_turn _helix lactose operon repressor Bcer98_2807 SM00704 CDGSH-type zinc finger. Function unknown. Bcer98_2813 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_2813 SM00876 Biotin and Thiamin Synthesis associated domain Bcer98_2823 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_2829 SM00859 Semialdehyde dehydrogenase, NAD binding domain Bcer98_2832 SM00849 Metallo-beta-lactamase superfamily Bcer98_2837 SM00849 Metallo-beta-lactamase superfamily Bcer98_2847 SM00382 ATPases associated with a variety of cellular activities Bcer98_2849 SM00062 Bacterial periplasmic substrate-binding proteins Bcer98_2849 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Bcer98_2855 SM00861 Transketolase, pyrimidine binding domain Bcer98_2859 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Bcer98_2861 SM00091 PAS domain Bcer98_2861 SM00382 ATPases associated with a variety of cellular activities Bcer98_2865 SM00448 cheY-homologous receiver domain Bcer98_2866 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Bcer98_2869 SM00363 S4 RNA-binding domain Bcer98_2870 SM00861 Transketolase, pyrimidine binding domain Bcer98_2877 SM00878 Biotin carboxylase C-terminal domain Bcer98_2887 SM00382 ATPases associated with a variety of cellular activities Bcer98_2891 SM00841 Elongation factor P, C-terminal Bcer98_2891 SM01185 Bcer98_2891 Bcer98_2897 SM00529 Helix-turn-helix diphteria tox regulatory element Bcer98_2900 SM00450 Rhodanese Homology Domain Bcer98_2902 SM00354 helix_turn _helix lactose operon repressor Bcer98_2909 SM00382 ATPases associated with a variety of cellular activities Bcer98_2910 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_2916 SM00487 DEAD-like helicases superfamily Bcer98_2916 SM00490 helicase superfamily c-terminal domain Bcer98_2963 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_2969 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_2971 SM00857 Resolvase, N terminal domain Bcer98_2979 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_2983 SM01018 B12 binding domain Bcer98_2987 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_2989 SM00849 Metallo-beta-lactamase superfamily Bcer98_2997 SM00382 ATPases associated with a variety of cellular activities Bcer98_3009 SM00382 ATPases associated with a variety of cellular activities Bcer98_3012 SM00518 AP endonuclease family 2 Bcer98_3013 SM00487 DEAD-like helicases superfamily Bcer98_3013 SM00490 helicase superfamily c-terminal domain Bcer98_3020 SM00400 zinc finger Bcer98_3020 SM00493 Bcer98_3020 Bcer98_3020 SM00766 DNA primase DnaG DnaB-binding Bcer98_3023 SM00116 Domain in cystathionine beta-synthase and other proteins. Bcer98_3030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_3036 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_3039 SM00271 DnaJ molecular chaperone homology domain Bcer98_3043 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_3046 SM00838 Elongation factor G C-terminus Bcer98_3051 SM00849 Metallo-beta-lactamase superfamily Bcer98_3053 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Bcer98_3057 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_3059 SM01103 Bcer98_3059 Bcer98_3068 SM00954 Region found in RelA / SpoT proteins Bcer98_3069 SM00098 Alkaline phosphatase homologues Bcer98_3080 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_3082 SM00354 helix_turn _helix lactose operon repressor Bcer98_3099 SM00732 Likely ribonuclease with RNase H fold. Bcer98_3101 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Bcer98_3107 SM00028 Tetratricopeptide repeats Bcer98_3107 SM00671 Sel1-like repeats. Bcer98_3111 SM00382 ATPases associated with a variety of cellular activities Bcer98_3115 SM00342 helix_turn_helix, arabinose operon control protein Bcer98_3123 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_3123 SM00954 Region found in RelA / SpoT proteins Bcer98_3133 SM01323 Bcer98_3133 Bcer98_3137 SM00382 ATPases associated with a variety of cellular activities Bcer98_3138 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Bcer98_3142 SM00257 Lysin motif Bcer98_3152 SM00382 ATPases associated with a variety of cellular activities Bcer98_3153 SM00387 Histidine kinase-like ATPases Bcer98_3154 SM00448 cheY-homologous receiver domain Bcer98_3154 SM00862 Transcriptional regulatory protein, C terminal Bcer98_3156 SM01317 Bcer98_3156 Bcer98_3176 SM00257 Lysin motif Bcer98_3178 SM01004 Delta-aminolevulinic acid dehydratase Bcer98_3184 SM00382 ATPases associated with a variety of cellular activities Bcer98_3184 SM00464 Found in ATP-dependent protease La (LON) Bcer98_3185 SM00382 ATPases associated with a variety of cellular activities Bcer98_3186 SM00382 ATPases associated with a variety of cellular activities Bcer98_3186 SM00994 ClpX C4-type zinc finger Bcer98_3186 SM01086 C-terminal, D2-small domain, of ClpB protein Bcer98_3192 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Bcer98_3193 SM00822 Bcer98_3193 Bcer98_3193 SM00823 Phosphopantetheine attachment site Bcer98_3193 SM00825 Beta-ketoacyl synthase Bcer98_3193 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Bcer98_3193 SM01294 Bcer98_3193 Bcer98_3195 SM00822 Bcer98_3195 Bcer98_3203 SM00909 Sporulation and spore germination Bcer98_3205 SM00421 helix_turn_helix, Lux Regulon Bcer98_3210 SM00382 ATPases associated with a variety of cellular activities Bcer98_3219 SM00465 GIY-YIG type nucleases (URI domain) Bcer98_3222 SM00893 Electron transfer flavoprotein domain Bcer98_3223 SM00893 Electron transfer flavoprotein domain Bcer98_3231 SM00382 ATPases associated with a variety of cellular activities Bcer98_3232 SM00387 Histidine kinase-like ATPases Bcer98_3232 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_3233 SM00448 cheY-homologous receiver domain Bcer98_3233 SM00862 Transcriptional regulatory protein, C terminal Bcer98_3236 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Bcer98_3238 SM00363 S4 RNA-binding domain Bcer98_3240 SM00463 Small MutS-related domain Bcer98_3240 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Bcer98_3240 SM00534 ATPase domain of DNA mismatch repair MUTS family Bcer98_3241 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Bcer98_3241 SM00481 DNA polymerase alpha chain like domain Bcer98_3241 SM00483 DNA polymerase X family Bcer98_3248 SM00873 B3/4 domain Bcer98_3248 SM00874 tRNA synthetase B5 domain Bcer98_3248 SM00896 Ferredoxin-fold anticodon binding domain Bcer98_3250 SM00967 RNA 2'-O ribose methyltransferase substrate binding Bcer98_3252 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_3262 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Bcer98_3268 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Bcer98_3271 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Bcer98_3271 SM01232 Bcer98_3271 Bcer98_3272 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Bcer98_3272 SM00474 3'-5' exonuclease Bcer98_3272 SM00475 5'-3' exonuclease Bcer98_3272 SM00482 DNA polymerase A domain Bcer98_3273 SM00091 PAS domain Bcer98_3273 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_3273 SM00387 Histidine kinase-like ATPases Bcer98_3273 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_3274 SM00448 cheY-homologous receiver domain Bcer98_3274 SM00862 Transcriptional regulatory protein, C terminal Bcer98_3277 SM01329 Bcer98_3277 Bcer98_3286 SM00345 helix_turn_helix gluconate operon transcriptional repressor Bcer98_3287 SM00919 Malic enzyme, NAD binding domain Bcer98_3287 SM01274 Bcer98_3287 Bcer98_3288 SM00481 DNA polymerase alpha chain like domain Bcer98_3293 SM00116 Domain in cystathionine beta-synthase and other proteins. Bcer98_3294 SM00849 Metallo-beta-lactamase superfamily Bcer98_3299 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Bcer98_3299 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Bcer98_3319 SM00981 Bcer98_3319 Bcer98_3327 SM00363 S4 RNA-binding domain Bcer98_3327 SM01390 Bcer98_3327 Bcer98_3329 SM00860 SMI1 / KNR4 family Bcer98_3333 SM00363 S4 RNA-binding domain Bcer98_3337 SM00116 Domain in cystathionine beta-synthase and other proteins. Bcer98_3342 SM00354 helix_turn _helix lactose operon repressor Bcer98_3343 SM00830 Chorismate mutase type II Bcer98_3351 SM00382 ATPases associated with a variety of cellular activities Bcer98_3351 SM00843 Bcer98_3351 Bcer98_3361 SM00849 Metallo-beta-lactamase superfamily Bcer98_3365 SM00642 Alpha-amylase domain Bcer98_3368 SM00420 helix_turn_helix, Deoxyribose operon repressor Bcer98_3369 SM00363 S4 RNA-binding domain Bcer98_3373 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_3388 SM01058 CarD-like/TRCF domain Bcer98_3394 SM00852 Probable molybdopterin binding domain Bcer98_3397 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_3398 SM00100 Cyclic nucleotide-monophosphate binding domain Bcer98_3398 SM00419 helix_turn_helix, cAMP Regulatory protein Bcer98_3399 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Bcer98_3405 SM00450 Rhodanese Homology Domain Bcer98_3418 SM00382 ATPases associated with a variety of cellular activities Bcer98_3422 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_3424 SM00382 ATPases associated with a variety of cellular activities Bcer98_3427 SM00871 Bacterial transcription activator, effector binding domain Bcer98_3428 SM00420 helix_turn_helix, Deoxyribose operon repressor Bcer98_3434 SM00852 Probable molybdopterin binding domain Bcer98_3446 SM01276 Bcer98_3446 Bcer98_3449 SM00047 Lysozyme subfamily 2 Bcer98_3449 SM00644 Bcer98_3449 Bcer98_3450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Bcer98_3455 SM00382 ATPases associated with a variety of cellular activities Bcer98_3462 SM01234 Bcer98_3462 Bcer98_3463 SM00947 Carbonic anhydrase Bcer98_3466 SM00894 Excalibur calcium-binding domain Bcer98_3475 SM00899 Bcer98_3475 Bcer98_3480 SM00046 Diacylglycerol kinase catalytic domain (presumed) Bcer98_3481 SM00382 ATPases associated with a variety of cellular activities Bcer98_3483 SM00448 cheY-homologous receiver domain Bcer98_3483 SM00862 Transcriptional regulatory protein, C terminal Bcer98_3484 SM00387 Histidine kinase-like ATPases Bcer98_3486 SM00382 ATPases associated with a variety of cellular activities Bcer98_3489 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Bcer98_3497 SM00357 Cold shock protein domain Bcer98_3504 SM00642 Alpha-amylase domain Bcer98_3511 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_3513 SM00344 helix_turn_helix ASNC type Bcer98_3520 SM01298 Bcer98_3520 Bcer98_3521 SM00479 Bcer98_3521 Bcer98_3550 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_3564 SM00422 helix_turn_helix, mercury resistance Bcer98_3568 SM00729 Elongator protein 3, MiaB family, Radical SAM Bcer98_3579 SM00382 ATPases associated with a variety of cellular activities Bcer98_3582 SM00382 ATPases associated with a variety of cellular activities Bcer98_3582 SM00930 Bcer98_3582 Bcer98_3585 SM00493 Bcer98_3585 Bcer98_3605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_3605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_3617 SM00448 cheY-homologous receiver domain Bcer98_3617 SM00862 Transcriptional regulatory protein, C terminal Bcer98_3618 SM00387 Histidine kinase-like ATPases Bcer98_3618 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_3619 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_3619 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_3620 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_3620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_3624 SM00347 helix_turn_helix multiple antibiotic resistance protein Bcer98_3636 SM00382 ATPases associated with a variety of cellular activities Bcer98_3648 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Bcer98_3653 SM00342 helix_turn_helix, arabinose operon control protein Bcer98_3661 SM00829 Enoylreductase Bcer98_3673 SM00316 Ribosomal protein S1-like RNA-binding domain Bcer98_3673 SM00357 Cold shock protein domain Bcer98_3673 SM00955 Bcer98_3673 Bcer98_3678 SM01192 Bcer98_3678 Bcer98_3678 SM01193 Bcer98_3678 Bcer98_3682 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Bcer98_3702 SM00028 Tetratricopeptide repeats Bcer98_3710 SM00487 DEAD-like helicases superfamily Bcer98_3710 SM00490 helicase superfamily c-terminal domain Bcer98_3712 SM00422 helix_turn_helix, mercury resistance Bcer98_3714 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_3721 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Bcer98_3721 SM00245 tail specific protease Bcer98_3723 SM00382 ATPases associated with a variety of cellular activities Bcer98_3725 SM00937 Bcer98_3725 Bcer98_3726 SM00957 SecA DEAD-like domain Bcer98_3726 SM00958 SecA preprotein cross-linking domain Bcer98_3728 SM00357 Cold shock protein domain Bcer98_3730 SM00487 DEAD-like helicases superfamily Bcer98_3730 SM00490 helicase superfamily c-terminal domain Bcer98_3748 SM00382 ATPases associated with a variety of cellular activities Bcer98_3749 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. Bcer98_3768 SM00287 Bacterial SH3 domain homologues Bcer98_3773 SM00287 Bacterial SH3 domain homologues Bcer98_3777 SM00487 DEAD-like helicases superfamily Bcer98_3777 SM00490 helicase superfamily c-terminal domain Bcer98_3786 SM00382 ATPases associated with a variety of cellular activities Bcer98_3789 SM00646 Bcer98_3789 Bcer98_3793 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_3793 SM00387 Histidine kinase-like ATPases Bcer98_3793 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_3794 SM00448 cheY-homologous receiver domain Bcer98_3794 SM00862 Transcriptional regulatory protein, C terminal Bcer98_3803 SM00382 ATPases associated with a variety of cellular activities Bcer98_3804 SM00850 LytTr DNA-binding domain Bcer98_3821 SM00052 Putative diguanylate phosphodiesterase Bcer98_3821 SM00091 PAS domain Bcer98_3821 SM00267 diguanylate cyclase Bcer98_3825 SM00382 ATPases associated with a variety of cellular activities Bcer98_3838 SM00226 Low molecular weight phosphatase family Bcer98_3843 SM00903 Flavin reductase like domain Bcer98_3850 SM00937 Bcer98_3850 Bcer98_3853 SM00357 Cold shock protein domain Bcer98_3853 SM00382 ATPases associated with a variety of cellular activities Bcer98_3853 SM00959 Rho termination factor, N-terminal domain Bcer98_3857 SM00448 cheY-homologous receiver domain Bcer98_3867 SM00155 Phospholipase D. Active site motifs. Bcer98_3869 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_3871 SM00421 helix_turn_helix, Lux Regulon Bcer98_3871 SM00448 cheY-homologous receiver domain Bcer98_3874 SM00382 ATPases associated with a variety of cellular activities Bcer98_3878 SM00836 DALR anticodon binding domain Bcer98_3878 SM01016 Arginyl tRNA synthetase N terminal dom Bcer98_3886 SM00422 helix_turn_helix, mercury resistance Bcer98_3900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Bcer98_3902 SM00382 ATPases associated with a variety of cellular activities Bcer98_3910 SM00936 Penicillin-binding protein 5, C-terminal domain Bcer98_3919 SM00986 Uracil DNA glycosylase superfamily Bcer98_3919 SM00987 UreE urease accessory protein, C-terminal domain Bcer98_3921 SM00382 ATPases associated with a variety of cellular activities Bcer98_3930 SM00448 cheY-homologous receiver domain Bcer98_3930 SM00850 LytTr DNA-binding domain Bcer98_3938 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Bcer98_3951 SM00382 ATPases associated with a variety of cellular activities Bcer98_3958 SM00448 cheY-homologous receiver domain Bcer98_3958 SM00850 LytTr DNA-binding domain Bcer98_3959 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Bcer98_3959 SM00387 Histidine kinase-like ATPases Bcer98_3971 SM01240 Bcer98_3971 Bcer98_3976 SM00857 Resolvase, N terminal domain Bcer98_3978 SM00857 Resolvase, N terminal domain Bcer98_3981 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_3984 SM00220 Serine/Threonine protein kinases, catalytic domain Bcer98_3988 SM00028 Tetratricopeptide repeats Bcer98_3992 SM00857 Resolvase, N terminal domain Bcer98_3995 SM00530 Helix-turn-helix XRE-family like proteins Bcer98_3998 SM00857 Resolvase, N terminal domain Bcer98_4001 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Bcer98_4002 SM00849 Metallo-beta-lactamase superfamily Bcer98_4005 SM00091 PAS domain Bcer98_4005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Bcer98_4005 SM00387 Histidine kinase-like ATPases Bcer98_4005 SM00388 His Kinase A (phosphoacceptor) domain Bcer98_4006 SM00448 cheY-homologous receiver domain Bcer98_4006 SM00862 Transcriptional regulatory protein, C terminal Bcer98_4007 SM00788 Adenylosuccinate synthetase Bcer98_4010 SM00267 diguanylate cyclase Bcer98_4019 SM00470 ParB-like nuclease domain Bcer98_4021 SM00470 ParB-like nuclease domain Bcer98_4023 SM01228 Bcer98_4023 Bcer98_4025 SM00393 Putative single-stranded nucleic acids-binding domain Bcer98_4025 SM01245 Bcer98_4025 Bcer98_4034 SM00060 Fibronectin type 3 domain