locus-tag class description LLY41_00020 PF01522 Polysaccharide deacetylase LLY41_00025 PF14089 KinB-signalling pathway activation in sporulation LLY41_00030 PF17898 Spore germination GerD central core domain LLY41_00035 PF10609 NUBPL iron-transfer P-loop NTPase LLY41_00040 PF01520 N-acetylmuramoyl-L-alanine amidase LLY41_00050 PF00171 Aldehyde dehydrogenase family LLY41_00055 PF00696 Amino acid kinase family LLY41_00055 PF01472 PUA domain LLY41_00060 PF03807 NADP oxidoreductase coenzyme F420-dependent LLY41_00060 PF14748 Pyrroline-5-carboxylate reductase dimerisation LLY41_00070 PF00380 Ribosomal protein S9/S16 LLY41_00075 PF00572 Ribosomal protein L13 LLY41_00080 PF01416 tRNA pseudouridine synthase LLY41_00085 PF02361 Cobalt transport protein LLY41_00090 PF00005 ABC transporter LLY41_00095 PF00005 ABC transporter LLY41_00100 PF01196 Ribosomal protein L17 LLY41_00105 PF01000 RNA polymerase Rpb3/RpoA insert domain LLY41_00105 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LLY41_00105 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LLY41_00110 PF00411 Ribosomal protein S11 LLY41_00115 PF00416 Ribosomal protein S13/S18 LLY41_00120 PF00444 Ribosomal protein L36 LLY41_00125 PF01176 Translation initiation factor 1A / IF-1 LLY41_00135 PF00557 Metallopeptidase family M24 LLY41_00140 PF05191 Adenylate kinase, active site lid LLY41_00145 PF00344 SecY translocase LLY41_00150 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LLY41_00155 PF00327 Ribosomal protein L30p/L7e LLY41_00160 PF00333 Ribosomal protein S5, N-terminal domain LLY41_00160 PF03719 Ribosomal protein S5, C-terminal domain LLY41_00165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LLY41_00170 PF00347 Ribosomal protein L6 LLY41_00175 PF00410 Ribosomal protein S8 LLY41_00180 PF00253 Ribosomal protein S14p/S29e LLY41_00185 PF00281 Ribosomal protein L5 LLY41_00185 PF00673 ribosomal L5P family C-terminus LLY41_00190 PF00467 KOW motif LLY41_00190 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LLY41_00195 PF00238 Ribosomal protein L14p/L23e LLY41_00200 PF00366 Ribosomal protein S17 LLY41_00205 PF00831 Ribosomal L29 protein LLY41_00210 PF00252 Ribosomal protein L16p/L10e LLY41_00215 PF00189 Ribosomal protein S3, C-terminal domain LLY41_00215 PF07650 KH domain LLY41_00220 PF00237 Ribosomal protein L22p/L17e LLY41_00225 PF00203 Ribosomal protein S19 LLY41_00230 PF00181 Ribosomal Proteins L2, RNA binding domain LLY41_00230 PF03947 Ribosomal Proteins L2, C-terminal domain LLY41_00235 PF00276 Ribosomal protein L23 LLY41_00240 PF00573 Ribosomal protein L4/L1 family LLY41_00245 PF00297 Ribosomal protein L3 LLY41_00250 PF00338 Ribosomal protein S10p/S20e LLY41_00255 PF00009 Elongation factor Tu GTP binding domain LLY41_00255 PF03144 Elongation factor Tu domain 2 LLY41_00255 PF03143 Elongation factor Tu C-terminal domain LLY41_00260 PF03144 Elongation factor Tu domain 2 LLY41_00260 PF03764 Elongation factor G, domain IV LLY41_00260 PF00009 Elongation factor Tu GTP binding domain LLY41_00260 PF14492 Elongation Factor G, domain II LLY41_00260 PF00679 Elongation factor G C-terminus LLY41_00265 PF00177 Ribosomal protein S7p/S5e LLY41_00270 PF00164 Ribosomal protein S12/S23 LLY41_00275 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LLY41_00280 PF04997 RNA polymerase Rpb1, domain 1 LLY41_00280 PF00623 RNA polymerase Rpb1, domain 2 LLY41_00280 PF04983 RNA polymerase Rpb1, domain 3 LLY41_00280 PF05000 RNA polymerase Rpb1, domain 4 LLY41_00280 PF04998 RNA polymerase Rpb1, domain 5 LLY41_00285 PF04560 RNA polymerase Rpb2, domain 7 LLY41_00285 PF10385 RNA polymerase beta subunit external 1 domain LLY41_00285 PF00562 RNA polymerase Rpb2, domain 6 LLY41_00285 PF04561 RNA polymerase Rpb2, domain 2 LLY41_00285 PF04563 RNA polymerase beta subunit LLY41_00285 PF04565 RNA polymerase Rpb2, domain 3 LLY41_00290 PF05175 Methyltransferase small domain LLY41_00295 PF00542 Ribosomal protein L7/L12 C-terminal domain LLY41_00295 PF16320 Ribosomal protein L7/L12 dimerisation domain LLY41_00300 PF00466 Ribosomal protein L10 LLY41_00305 PF00687 Ribosomal protein L1p/L10e family LLY41_00310 PF00298 Ribosomal protein L11, RNA binding domain LLY41_00310 PF03946 Ribosomal protein L11, N-terminal domain LLY41_00315 PF00467 KOW motif LLY41_00315 PF02357 Transcription termination factor nusG LLY41_00320 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LLY41_00325 PF00471 Ribosomal protein L33 LLY41_00330 PF04542 Sigma-70 region 2 LLY41_00330 PF08281 Sigma-70, region 4 LLY41_00335 PF05991 YacP-like NYN domain LLY41_00340 PF00588 SpoU rRNA Methylase family LLY41_00340 PF08032 RNA 2'-O ribose methyltransferase substrate binding LLY41_00345 PF00636 Ribonuclease III domain LLY41_00350 PF09190 DALR domain LLY41_00350 PF01406 tRNA synthetases class I (C) catalytic domain LLY41_00355 PF00132 Bacterial transferase hexapeptide (six repeats) LLY41_00355 PF06426 Serine acetyltransferase, N-terminal LLY41_00360 PF00749 tRNA synthetases class I (E and Q), catalytic domain LLY41_00365 PF02542 YgbB family LLY41_00370 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LLY41_00380 PF02457 DisA bacterial checkpoint controller nucleotide-binding LLY41_00380 PF10635 DisA bacterial checkpoint controller linker region LLY41_00390 PF10431 C-terminal, D2-small domain, of ClpB protein LLY41_00390 PF02861 Clp amino terminal domain, pathogenicity island component LLY41_00390 PF07724 AAA domain (Cdc48 subfamily) LLY41_00390 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_00390 PF17871 AAA lid domain LLY41_00395 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain LLY41_00400 PF02151 UvrB/uvrC motif LLY41_00405 PF05848 CtsR N-terminal HTH domain LLY41_00405 PF17727 CtsR C-terminal dimerization domain LLY41_00485 PF00152 tRNA synthetases class II (D, K and N) LLY41_00485 PF01336 OB-fold nucleic acid binding domain LLY41_00490 PF01207 Dihydrouridine synthase (Dus) LLY41_00495 PF01381 Helix-turn-helix LLY41_00500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LLY41_00505 PF02152 Dihydroneopterin aldolase LLY41_00510 PF00809 Pterin binding enzyme LLY41_00515 PF01063 Amino-transferase class IV LLY41_00520 PF00117 Glutamine amidotransferase class-I LLY41_00530 PF00291 Pyridoxal-phosphate dependent enzyme LLY41_00535 PF13145 PPIC-type PPIASE domain LLY41_00540 PF01430 Hsp33 protein LLY41_00545 PF03309 Type III pantothenate kinase LLY41_00550 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_00550 PF17862 AAA+ lid domain LLY41_00550 PF06480 FtsH Extracellular LLY41_00550 PF01434 Peptidase family M41 LLY41_00555 PF00156 Phosphoribosyl transferase domain LLY41_00560 PF01171 PP-loop family LLY41_00560 PF09179 TilS substrate binding domain LLY41_00560 PF11734 TilS substrate C-terminal domain LLY41_00565 PF00069 Protein kinase domain LLY41_00570 PF00092 von Willebrand factor type A domain LLY41_00575 PF07228 Stage II sporulation protein E (SpoIIE) LLY41_00590 PF00575 S1 RNA binding domain LLY41_00600 PF09578 Spore cortex protein YabQ (Spore_YabQ) LLY41_00605 PF07873 YabP family LLY41_00610 PF01479 S4 domain LLY41_00615 PF03819 MazG nucleotide pyrophosphohydrolase domain LLY41_00615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LLY41_00620 PF01943 Polysaccharide biosynthesis protein LLY41_00620 PF14667 Polysaccharide biosynthesis C-terminal domain LLY41_00625 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LLY41_00625 PF15714 Stage V sporulation protein T C-terminal, transcription factor LLY41_00630 PF17757 UvrB interaction domain LLY41_00630 PF03461 TRCF domain LLY41_00630 PF00271 Helicase conserved C-terminal domain LLY41_00630 PF02559 CarD-like/TRCF domain LLY41_00630 PF00270 DEAD/DEAH box helicase LLY41_00635 PF10955 Protein of unknown function (DUF2757) LLY41_00640 PF01195 Peptidyl-tRNA hydrolase LLY41_00645 PF01386 Ribosomal L25p family LLY41_00645 PF14693 Ribosomal protein TL5, C-terminal domain LLY41_00650 PF14572 Phosphoribosyl synthetase-associated domain LLY41_00650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LLY41_00655 PF00132 Bacterial transferase hexapeptide (six repeats) LLY41_00655 PF00483 Nucleotidyl transferase LLY41_00660 PF04026 SpoVG LLY41_00665 PF01042 Endoribonuclease L-PSP LLY41_00670 PF09182 Bacterial purine repressor, N-terminal LLY41_00670 PF00156 Phosphoribosyl transferase domain LLY41_00675 PF08544 GHMP kinases C terminal LLY41_00675 PF00288 GHMP kinases N terminal domain LLY41_00680 PF00269 Small, acid-soluble spore proteins, alpha/beta type LLY41_00685 PF06257 Biofilm formation stimulator VEG LLY41_00690 PF05582 YabG peptidase U57 LLY41_00695 PF00398 Ribosomal RNA adenine dimethylase LLY41_00700 PF13331 Domain of unknown function (DUF4093) LLY41_00700 PF13662 Toprim domain LLY41_00705 PF07501 G5 domain LLY41_00705 PF06725 3D domain LLY41_00705 PF03990 G5-linked-Ubiquitin-like domain LLY41_00710 PF01026 TatD related DNase LLY41_00715 PF09334 tRNA synthetases class I (M) LLY41_00715 PF08264 Anticodon-binding domain of tRNA LLY41_00715 PF01588 Putative tRNA binding domain LLY41_00720 PF18277 AbrB C-terminal domain LLY41_00720 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LLY41_00725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LLY41_00730 PF01541 GIY-YIG catalytic domain LLY41_00735 PF05175 Methyltransferase small domain LLY41_00740 PF06156 Initiation control protein YabA LLY41_00745 PF04468 PSP1 C-terminal conserved region LLY41_00750 PF09115 DNA polymerase III, delta subunit, C terminal LLY41_00755 PF03885 Protein of unknown function (DUF327) LLY41_00760 PF06153 Cyclic-di-AMP receptor LLY41_00765 PF02223 Thymidylate kinase LLY41_00770 PF01276 Orn/Lys/Arg decarboxylase, major domain LLY41_00770 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LLY41_00775 PF10764 Inhibitor of sigma-G Gin LLY41_00805 PF07441 SigmaK-factor processing regulatory protein BofA LLY41_00815 PF02132 RecR protein LLY41_00815 PF13662 Toprim domain LLY41_00820 PF02575 YbaB/EbfC DNA-binding family LLY41_00825 PF12169 DNA polymerase III subunits gamma and tau domain III LLY41_00835 PF14437 MafB19-like deaminase LLY41_00840 PF00857 Isochorismatase family LLY41_00845 PF01476 LysM domain LLY41_00845 PF00704 Glycosyl hydrolases family 18 LLY41_00850 PF01712 Deoxynucleoside kinase LLY41_00855 PF01712 Deoxynucleoside kinase LLY41_00870 PF01174 SNO glutamine amidotransferase family LLY41_00875 PF01680 SOR/SNZ family LLY41_00880 PF07943 Penicillin-binding protein 5, C-terminal domain LLY41_00880 PF00768 D-alanyl-D-alanine carboxypeptidase LLY41_00885 PF00571 CBS domain LLY41_00885 PF00478 IMP dehydrogenase / GMP reductase domain LLY41_00890 PF14175 YaaC-like Protein LLY41_00925 PF01966 HD domain LLY41_00925 PF11871 Domain of unknown function (DUF3391) LLY41_00930 PF00521 DNA gyrase/topoisomerase IV, subunit A LLY41_00930 PF03989 DNA gyrase C-terminal domain, beta-propeller LLY41_00935 PF01751 Toprim domain LLY41_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_00935 PF00204 DNA gyrase B LLY41_00935 PF00986 DNA gyrase B subunit, carboxyl terminus LLY41_00940 PF04025 Domain of unknown function (DUF370) LLY41_00945 PF02463 RecF/RecN/SMC N terminal domain LLY41_00955 PF00712 DNA polymerase III beta subunit, N-terminal domain LLY41_00955 PF02767 DNA polymerase III beta subunit, central domain LLY41_00955 PF02768 DNA polymerase III beta subunit, C-terminal domain LLY41_00960 PF11638 DnaA N-terminal domain LLY41_00960 PF08299 Bacterial dnaA protein helix-turn-helix LLY41_00960 PF00308 Bacterial dnaA protein LLY41_00965 PF00468 Ribosomal protein L34 LLY41_00970 PF00825 Ribonuclease P LLY41_00975 PF02096 60Kd inner membrane protein LLY41_00980 PF01424 R3H domain LLY41_00980 PF14804 Jag N-terminus LLY41_00985 PF01926 50S ribosome-binding GTPase LLY41_00985 PF10396 GTP-binding protein TrmE N-terminus LLY41_00985 PF12631 MnmE helical domain LLY41_00990 PF01134 Glucose inhibited division protein A LLY41_00990 PF13932 GidA associated domain LLY41_00995 PF02527 rRNA small subunit methyltransferase G LLY41_01000 PF17762 HTH domain found in ParB protein LLY41_01000 PF02195 ParB-like nuclease domain LLY41_01005 PF13614 AAA domain LLY41_01020 PF06866 Protein of unknown function (DUF1256) LLY41_01025 PF00924 Mechanosensitive ion channel LLY41_01030 PF06107 Bacterial protein of unknown function (DUF951) LLY41_01035 PF01568 Molydopterin dinucleotide binding domain LLY41_01035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLY41_01035 PF00384 Molybdopterin oxidoreductase LLY41_01040 PF06071 Protein of unknown function (DUF933) LLY41_01040 PF01926 50S ribosome-binding GTPase LLY41_01045 PF01250 Ribosomal protein S6 LLY41_01050 PF00436 Single-strand binding protein family LLY41_01055 PF01084 Ribosomal protein S18 LLY41_01060 PF09991 Predicted membrane protein (DUF2232) LLY41_01065 PF02272 DHHA1 domain LLY41_01065 PF01368 DHH family LLY41_01070 PF01281 Ribosomal protein L9, N-terminal domain LLY41_01070 PF03948 Ribosomal protein L9, C-terminal domain LLY41_01075 PF00772 DnaB-like helicase N terminal domain LLY41_01075 PF03796 DnaB-like helicase C terminal domain LLY41_01080 PF00709 Adenylosuccinate synthetase LLY41_01105 PF01476 LysM domain LLY41_01105 PF01551 Peptidase family M23 LLY41_01110 PF00072 Response regulator receiver domain LLY41_01110 PF00486 Transcriptional regulatory protein, C terminal LLY41_01115 PF00672 HAMP domain LLY41_01115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_01115 PF00512 His Kinase A (phospho-acceptor) domain LLY41_01115 PF13426 PAS domain LLY41_01120 PF07435 YycH protein LLY41_01125 PF09648 YycH protein LLY41_01130 PF00753 Metallo-beta-lactamase superfamily LLY41_01135 PF13180 PDZ domain LLY41_01145 PF02590 Predicted SPOUT methyltransferase LLY41_01170 PF01420 Type I restriction modification DNA specificity domain LLY41_01210 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH LLY41_01210 PF04740 LXG domain of WXG superfamily LLY41_01255 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH LLY41_01255 PF04740 LXG domain of WXG superfamily LLY41_01275 PF07508 Recombinase LLY41_01275 PF00239 Resolvase, N terminal domain LLY41_01275 PF13408 Recombinase zinc beta ribbon domain LLY41_01290 PF03880 DbpA RNA binding domain LLY41_01290 PF00270 DEAD/DEAH box helicase LLY41_01290 PF00271 Helicase conserved C-terminal domain LLY41_01295 PF00849 RNA pseudouridylate synthase LLY41_01295 PF01479 S4 domain LLY41_01330 PF01047 MarR family LLY41_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_01355 PF00512 His Kinase A (phospho-acceptor) domain LLY41_01355 PF00989 PAS fold LLY41_01355 PF13188 PAS domain LLY41_01355 PF13426 PAS domain LLY41_01360 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LLY41_01360 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LLY41_01365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLY41_01365 PF03466 LysR substrate binding domain LLY41_01380 PF12832 MFS_1 like family LLY41_01385 PF00027 Cyclic nucleotide-binding domain LLY41_01390 PF10415 Fumarase C C-terminus LLY41_01390 PF00206 Lyase LLY41_01395 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LLY41_01395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LLY41_01400 PF02447 GntP family permease LLY41_01405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LLY41_01405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LLY41_01410 PF07729 FCD domain LLY41_01410 PF00392 Bacterial regulatory proteins, gntR family LLY41_01420 PF06039 Malate:quinone oxidoreductase (Mqo) LLY41_01425 PF01381 Helix-turn-helix LLY41_01430 PF06445 GyrI-like small molecule binding domain LLY41_01430 PF12833 Helix-turn-helix domain LLY41_01480 PF05922 Peptidase inhibitor I9 LLY41_01480 PF00082 Subtilase family LLY41_01490 PF07504 Fungalysin/Thermolysin Propeptide Motif LLY41_01490 PF03413 Peptidase propeptide and YPEB domain LLY41_01490 PF01447 Thermolysin metallopeptidase, catalytic domain LLY41_01490 PF02868 Thermolysin metallopeptidase, alpha-helical domain LLY41_01510 PF00085 Thioredoxin LLY41_01520 PF07690 Major Facilitator Superfamily LLY41_01535 PF04228 Putative neutral zinc metallopeptidase LLY41_01545 PF00854 POT family LLY41_01550 PF00990 Diguanylate cyclase, GGDEF domain LLY41_01550 PF07694 5TMR of 5TMR-LYT LLY41_01565 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_01580 PF16657 Maltogenic Amylase, C-terminal domain LLY41_01580 PF00128 Alpha amylase, catalytic domain LLY41_01585 PF04073 Aminoacyl-tRNA editing domain LLY41_01600 PF07670 Nucleoside recognition LLY41_01615 PF00005 ABC transporter LLY41_01625 PF02667 Short chain fatty acid transporter LLY41_01645 PF07995 Glucose / Sorbosone dehydrogenase LLY41_01650 PF00440 Bacterial regulatory proteins, tetR family LLY41_01660 PF00005 ABC transporter LLY41_01665 PF13545 Crp-like helix-turn-helix domain LLY41_01665 PF00027 Cyclic nucleotide-binding domain LLY41_01675 PF02585 GlcNAc-PI de-N-acetylase LLY41_01680 PF08830 Protein of unknown function (DUF1806) LLY41_01685 PF08543 Phosphomethylpyrimidine kinase LLY41_01695 PF12804 MobA-like NTP transferase domain LLY41_01700 PF02391 MoaE protein LLY41_01705 PF02597 ThiS family LLY41_01710 PF00899 ThiF family LLY41_01720 PF11181 Heat induced stress protein YflT LLY41_01725 PF03167 Uracil DNA glycosylase superfamily LLY41_01740 PF04241 Protein of unknown function (DUF423) LLY41_01745 PF09671 Spore coat protein (Spore_GerQ) LLY41_01750 PF06778 Chlorite dismutase LLY41_01755 PF01515 Phosphate acetyl/butaryl transferase LLY41_01760 PF03099 Biotin/lipoate A/B protein ligase family LLY41_01770 PF07293 Protein of unknown function (DUF1450) LLY41_01775 PF01966 HD domain LLY41_01785 PF01361 Tautomerase enzyme LLY41_01790 PF02163 Peptidase family M50 LLY41_01795 PF08741 YwhD family LLY41_01805 PF17284 Spermidine synthase tetramerisation domain LLY41_01810 PF00491 Arginase family LLY41_01815 PF09148 Domain of unknown function (DUF1934) LLY41_01820 PF00750 tRNA synthetases class I (R) LLY41_01820 PF05746 DALR anticodon binding domain LLY41_01820 PF03485 Arginyl tRNA synthetase N terminal domain LLY41_01830 PF00892 EamA-like transporter family LLY41_01835 PF03851 UV-endonuclease UvdE LLY41_01840 PF13091 PLD-like domain LLY41_01845 PF13183 4Fe-4S dicluster domain LLY41_01845 PF02754 Cysteine-rich domain LLY41_01855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLY41_01855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLY41_01860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLY41_01860 PF02770 Acyl-CoA dehydrogenase, middle domain LLY41_01860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLY41_01865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLY41_01865 PF02770 Acyl-CoA dehydrogenase, middle domain LLY41_01865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLY41_01875 PF01642 Methylmalonyl-CoA mutase LLY41_01875 PF02310 B12 binding domain LLY41_01885 PF05066 HB1, ASXL, restriction endonuclease HTH domain LLY41_01890 PF00117 Glutamine amidotransferase class-I LLY41_01890 PF06418 CTP synthase N-terminus LLY41_01895 PF10740 Domain of unknown function (DUF2529) LLY41_01900 PF00072 Response regulator receiver domain LLY41_01905 PF01116 Fructose-bisphosphate aldolase class-II LLY41_01910 PF00923 Transaldolase/Fructose-6-phosphate aldolase LLY41_01915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LLY41_01920 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LLY41_01925 PF07497 Rho termination factor, RNA-binding domain LLY41_01925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLY41_01925 PF07498 Rho termination factor, N-terminal domain LLY41_01935 PF01197 Ribosomal protein L31 LLY41_01940 PF00265 Thymidine kinase LLY41_01950 PF13536 Putative multidrug resistance efflux transporter LLY41_01955 PF03462 PCRF domain LLY41_01955 PF00472 RF-1 domain LLY41_01965 PF09551 Stage II sporulation protein R (spore_II_R) LLY41_01980 PF03481 Putative GTP-binding controlling metal-binding LLY41_01980 PF01300 Telomere recombination LLY41_01985 PF02659 Putative manganese efflux pump LLY41_01990 PF01451 Low molecular weight phosphotyrosine protein phosphatase LLY41_01995 PF02743 Cache domain LLY41_01995 PF00672 HAMP domain LLY41_01995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_02000 PF02502 Ribose/Galactose Isomerase LLY41_02005 PF04260 Protein of unknown function (DUF436) LLY41_02010 PF08281 Sigma-70, region 4 LLY41_02010 PF04542 Sigma-70 region 2 LLY41_02020 PF00464 Serine hydroxymethyltransferase LLY41_02030 PF02350 UDP-N-acetylglucosamine 2-epimerase LLY41_02045 PF00144 Beta-lactamase LLY41_02060 PF03899 ATP synthase I chain LLY41_02065 PF00119 ATP synthase A chain LLY41_02070 PF00137 ATP synthase subunit C LLY41_02075 PF00430 ATP synthase B/B' CF(0) LLY41_02080 PF00213 ATP synthase delta (OSCP) subunit LLY41_02085 PF02874 ATP synthase alpha/beta family, beta-barrel domain LLY41_02085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLY41_02085 PF00306 ATP synthase alpha/beta chain, C terminal domain LLY41_02090 PF00231 ATP synthase LLY41_02095 PF02874 ATP synthase alpha/beta family, beta-barrel domain LLY41_02095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLY41_02100 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LLY41_02100 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LLY41_02105 PF12327 FtsZ family, C-terminal domain LLY41_02105 PF00091 Tubulin/FtsZ family, GTPase domain LLY41_02120 PF06725 3D domain LLY41_02120 PF01476 LysM domain LLY41_02125 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LLY41_02130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LLY41_02140 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LLY41_02145 PF00146 NADH dehydrogenase LLY41_02150 PF00037 4Fe-4S binding domain LLY41_02155 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LLY41_02160 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LLY41_02165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LLY41_02165 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus LLY41_02165 PF00361 Proton-conducting membrane transporter LLY41_02170 PF00361 Proton-conducting membrane transporter LLY41_02175 PF00361 Proton-conducting membrane transporter LLY41_02180 PF06612 Protein of unknown function (DUF1146) LLY41_02190 PF08680 TATA-box binding LLY41_02195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LLY41_02200 PF08486 Stage II sporulation protein LLY41_02210 PF01551 Peptidase family M23 LLY41_02215 PF01470 Pyroglutamyl peptidase LLY41_02230 PF00474 Sodium:solute symporter family LLY41_02240 PF01743 Poly A polymerase head domain LLY41_02240 PF00571 CBS domain LLY41_02245 PF14480 DNA polymerase III polC-type N-terminus I LLY41_02245 PF11490 DNA polymerase III polC-type N-terminus II LLY41_02245 PF07733 Bacterial DNA polymerase III alpha NTPase domain LLY41_02245 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LLY41_02245 PF14579 Helix-hairpin-helix motif LLY41_02245 PF02811 PHP domain LLY41_02245 PF00929 Exonuclease LLY41_02250 PF01476 LysM domain LLY41_02250 PF00877 NlpC/P60 family LLY41_02255 PF12116 Stage III sporulation protein D LLY41_02265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLY41_02265 PF00460 Flagella basal body rod protein LLY41_02270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLY41_02270 PF00460 Flagella basal body rod protein LLY41_02280 PF07977 FabA-like domain LLY41_02295 PF00436 Single-strand binding protein family LLY41_02320 PF04434 SWIM zinc finger LLY41_02335 PF00672 HAMP domain LLY41_02335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_02345 PF14502 Helix-turn-helix domain LLY41_02345 PF14503 YhfZ C-terminal domain LLY41_02355 PF10941 Protein of unknown function DUF2620 LLY41_02360 PF10797 Protein of unknown function LLY41_02365 PF02126 Phosphotriesterase family LLY41_02370 PF00155 Aminotransferase class I and II LLY41_02375 PF01168 Alanine racemase, N-terminal domain LLY41_02380 PF01676 Metalloenzyme superfamily LLY41_02390 PF07486 Cell Wall Hydrolase LLY41_02390 PF01471 Putative peptidoglycan binding domain LLY41_02395 PF01476 LysM domain LLY41_02395 PF06725 3D domain LLY41_02400 PF00563 EAL domain LLY41_02400 PF03707 Bacterial signalling protein N terminal repeat LLY41_02400 PF00990 Diguanylate cyclase, GGDEF domain LLY41_02415 PF00356 Bacterial regulatory proteins, lacI family LLY41_02420 PF01547 Bacterial extracellular solute-binding protein LLY41_02425 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_02430 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_02435 PF01134 Glucose inhibited division protein A LLY41_02435 PF13932 GidA associated domain LLY41_02440 PF00128 Alpha amylase, catalytic domain LLY41_02500 PF00356 Bacterial regulatory proteins, lacI family LLY41_02510 PF01547 Bacterial extracellular solute-binding protein LLY41_02515 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_02520 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_02545 PF02743 Cache domain LLY41_02545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_02545 PF00672 HAMP domain LLY41_02570 PF03717 Penicillin-binding Protein dimerisation domain LLY41_02570 PF05223 NTF2-like N-terminal transpeptidase domain LLY41_02570 PF00905 Penicillin binding protein transpeptidase domain LLY41_02580 PF03816 Cell envelope-related transcriptional attenuator domain LLY41_02590 PF13533 Biotin-lipoyl like LLY41_02600 PF01476 LysM domain LLY41_02600 PF00877 NlpC/P60 family LLY41_02630 PF01348 Type II intron maturase LLY41_02630 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LLY41_02635 PF08378 Nuclease-related domain LLY41_02645 PF04002 RadC-like JAB domain LLY41_02655 PF02899 Phage integrase, N-terminal SAM-like domain LLY41_02655 PF00589 Phage integrase family LLY41_02725 PF04122 Putative cell wall binding repeat 2 LLY41_02725 PF01520 N-acetylmuramoyl-L-alanine amidase LLY41_02730 PF00082 Subtilase family LLY41_02740 PF07516 SecA Wing and Scaffold domain LLY41_02740 PF01043 SecA preprotein cross-linking domain LLY41_02740 PF07517 SecA DEAD-like domain LLY41_02755 PF00483 Nucleotidyl transferase LLY41_02760 PF16363 GDP-mannose 4,6 dehydratase LLY41_02775 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LLY41_02780 PF01467 Cytidylyltransferase-like LLY41_02785 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LLY41_02795 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LLY41_02795 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain LLY41_02795 PF17890 Peptidoglycan hydrolase LytB WW-like domain LLY41_02795 PF01473 Putative cell wall binding repeat LLY41_02805 PF08239 Bacterial SH3 domain LLY41_02805 PF00005 ABC transporter LLY41_02815 PF00884 Sulfatase LLY41_02825 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase LLY41_02825 PF00535 Glycosyl transferase family 2 LLY41_02835 PF03023 Lipid II flippase MurJ LLY41_02840 PF03808 Glycosyl transferase WecB/TagA/CpsF family LLY41_02845 PF13439 Glycosyltransferase Family 4 LLY41_02845 PF00534 Glycosyl transferases group 1 LLY41_02850 PF00953 Glycosyl transferase family 4 LLY41_02860 PF03816 Cell envelope-related transcriptional attenuator domain LLY41_02865 PF09186 Domain of unknown function (DUF1949) LLY41_02865 PF01205 Uncharacterized protein family UPF0029 LLY41_02870 PF07730 Histidine kinase LLY41_02870 PF05384 Sensor protein DegS LLY41_02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_02875 PF00196 Bacterial regulatory proteins, luxR family LLY41_02875 PF00072 Response regulator receiver domain LLY41_02890 PF02645 Uncharacterised protein, DegV family COG1307 LLY41_02895 PF00271 Helicase conserved C-terminal domain LLY41_02895 PF04851 Type III restriction enzyme, res subunit LLY41_02905 PF00563 EAL domain LLY41_02905 PF00990 Diguanylate cyclase, GGDEF domain LLY41_02905 PF08447 PAS fold LLY41_02905 PF08448 PAS fold LLY41_02935 PF00700 Bacterial flagellin C-terminal helical region LLY41_02935 PF00669 Bacterial flagellin N-terminal helical region LLY41_02940 PF03885 Protein of unknown function (DUF327) LLY41_02955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLY41_02955 PF00460 Flagella basal body rod protein LLY41_02960 PF00700 Bacterial flagellin C-terminal helical region LLY41_02960 PF00669 Bacterial flagellin N-terminal helical region LLY41_02970 PF02623 FliW protein LLY41_02975 PF02599 Global regulator protein family LLY41_02980 PF00669 Bacterial flagellin N-terminal helical region LLY41_02980 PF00700 Bacterial flagellin C-terminal helical region LLY41_02990 PF02719 Polysaccharide biosynthesis protein LLY41_03000 PF05050 Methyltransferase FkbM domain LLY41_03010 PF16363 GDP-mannose 4,6 dehydratase LLY41_03015 PF01370 NAD dependent epimerase/dehydratase family LLY41_03020 PF00535 Glycosyl transferase family 2 LLY41_03025 PF01050 Mannose-6-phosphate isomerase LLY41_03025 PF00483 Nucleotidyl transferase LLY41_03035 PF01501 Glycosyl transferase family 8 LLY41_03045 PF01467 Cytidylyltransferase-like LLY41_03060 PF13193 AMP-binding enzyme C-terminal domain LLY41_03060 PF00501 AMP-binding enzyme LLY41_03080 PF02348 Cytidylyltransferase LLY41_03090 PF03102 NeuB family LLY41_03090 PF08666 SAF domain LLY41_03095 PF16363 GDP-mannose 4,6 dehydratase LLY41_03100 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LLY41_03110 PF07196 Flagellin hook IN motif LLY41_03110 PF07195 Flagellar hook-associated protein 2 C-terminus LLY41_03110 PF02465 Flagellar hook-associated protein 2 N-terminus LLY41_03115 PF02561 Flagellar protein FliS LLY41_03130 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LLY41_03130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LLY41_03135 PF00672 HAMP domain LLY41_03135 PF02743 Cache domain LLY41_03135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_03140 PF02608 ABC transporter substrate-binding protein PnrA-like LLY41_03160 PF01966 HD domain LLY41_03170 PF02417 Chromate transporter LLY41_03175 PF02417 Chromate transporter LLY41_03185 PF02810 SEC-C motif LLY41_03185 PF05225 helix-turn-helix, Psq domain LLY41_03200 PF03480 Bacterial extracellular solute-binding protein, family 7 LLY41_03205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLY41_03205 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LLY41_03210 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLY41_03210 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LLY41_03215 PF03480 Bacterial extracellular solute-binding protein, family 7 LLY41_03220 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LLY41_03225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLY41_03235 PF00920 Dehydratase family LLY41_03240 PF01614 Bacterial transcriptional regulator LLY41_03240 PF09339 IclR helix-turn-helix domain LLY41_03250 PF08666 SAF domain LLY41_03250 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LLY41_03255 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LLY41_03255 PF08666 SAF domain LLY41_03260 PF00171 Aldehyde dehydrogenase family LLY41_03265 PF13378 Enolase C-terminal domain-like LLY41_03265 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLY41_03270 PF00701 Dihydrodipicolinate synthetase family LLY41_03280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLY41_03280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLY41_03280 PF01842 ACT domain LLY41_03290 PF00294 pfkB family carbohydrate kinase LLY41_03295 PF01081 KDPG and KHG aldolase LLY41_03300 PF01969 Protein of unknown function DUF111 LLY41_03305 PF00731 AIR carboxylase LLY41_03310 PF01969 Protein of unknown function DUF111 LLY41_03315 PF02540 NAD synthase LLY41_03320 PF13386 Cytochrome C biogenesis protein transmembrane region LLY41_03330 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LLY41_03330 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LLY41_03335 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLY41_03340 PF00005 ABC transporter LLY41_03345 PF02687 FtsX-like permease family LLY41_03345 PF18075 FtsX extracellular domain LLY41_03350 PF00877 NlpC/P60 family LLY41_03355 PF03572 Peptidase family S41 LLY41_03355 PF01471 Putative peptidoglycan binding domain LLY41_03355 PF17820 PDZ domain LLY41_03360 PF17820 PDZ domain LLY41_03370 PF01594 AI-2E family transporter LLY41_03380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_03380 PF00512 His Kinase A (phospho-acceptor) domain LLY41_03380 PF00989 PAS fold LLY41_03380 PF08447 PAS fold LLY41_03385 PF09383 NIL domain LLY41_03385 PF00005 ABC transporter LLY41_03390 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_03395 PF03180 NLPA lipoprotein LLY41_03405 PF00269 Small, acid-soluble spore proteins, alpha/beta type LLY41_03410 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) LLY41_03415 PF17757 UvrB interaction domain LLY41_03415 PF12344 Ultra-violet resistance protein B LLY41_03415 PF04851 Type III restriction enzyme, res subunit LLY41_03415 PF02151 UvrB/uvrC motif LLY41_03415 PF00271 Helicase conserved C-terminal domain LLY41_03420 PF17760 UvrA interaction domain LLY41_03420 PF17755 UvrA DNA-binding domain LLY41_03420 PF00005 ABC transporter LLY41_03440 PF13349 Putative adhesin LLY41_03445 PF04024 PspC domain LLY41_03450 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV LLY41_03460 PF01520 N-acetylmuramoyl-L-alanine amidase LLY41_03460 PF05036 Sporulation related domain LLY41_03465 PF00392 Bacterial regulatory proteins, gntR family LLY41_03465 PF07702 UTRA domain LLY41_03470 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LLY41_03475 PF01979 Amidohydrolase family LLY41_03480 PF13580 SIS domain LLY41_03490 PF00367 phosphotransferase system, EIIB LLY41_03490 PF02378 Phosphotransferase system, EIIC LLY41_03495 PF07475 HPr Serine kinase C-terminal domain LLY41_03495 PF02603 HPr Serine kinase N terminus LLY41_03505 PF07670 Nucleoside recognition LLY41_03510 PF13419 Haloacid dehalogenase-like hydrolase LLY41_03515 PF14602 Hexapeptide repeat of succinyl-transferase LLY41_03520 PF13393 Histidyl-tRNA synthetase LLY41_03525 PF01634 ATP phosphoribosyltransferase LLY41_03530 PF00815 Histidinol dehydrogenase LLY41_03535 PF00475 Imidazoleglycerol-phosphate dehydratase LLY41_03540 PF00117 Glutamine amidotransferase class-I LLY41_03545 PF00977 Histidine biosynthesis protein LLY41_03550 PF00977 Histidine biosynthesis protein LLY41_03555 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LLY41_03555 PF01502 Phosphoribosyl-AMP cyclohydrolase LLY41_03570 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_03575 PF00293 NUDIX domain LLY41_03580 PF03668 P-loop ATPase protein family LLY41_03585 PF01933 Uncharacterised protein family UPF0052 LLY41_03595 PF00381 PTS HPr component phosphorylation site LLY41_03600 PF00574 Clp protease LLY41_03610 PF00309 Sigma-54 factor, Activator interacting domain (AID) LLY41_03610 PF04963 Sigma-54 factor, core binding domain LLY41_03610 PF04552 Sigma-54, DNA binding domain LLY41_03620 PF04198 Putative sugar-binding domain LLY41_03625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LLY41_03625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LLY41_03630 PF00162 Phosphoglycerate kinase LLY41_03635 PF00121 Triosephosphate isomerase LLY41_03640 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LLY41_03640 PF01676 Metalloenzyme superfamily LLY41_03645 PF00113 Enolase, C-terminal TIM barrel domain LLY41_03645 PF03952 Enolase, N-terminal domain LLY41_03650 PF03840 Preprotein translocase SecG subunit LLY41_03655 PF12146 Serine aminopeptidase, S33 LLY41_03660 PF08206 Ribonuclease B OB domain LLY41_03660 PF00773 RNB domain LLY41_03660 PF17876 Cold shock domain LLY41_03660 PF00575 S1 RNA binding domain LLY41_03665 PF01668 SmpB protein LLY41_03680 PF00440 Bacterial regulatory proteins, tetR family LLY41_03695 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LLY41_03700 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LLY41_03705 PF00924 Mechanosensitive ion channel LLY41_03710 PF03358 NADPH-dependent FMN reductase LLY41_03715 PF00245 Alkaline phosphatase LLY41_03720 PF11611 Domain of unknown function (DUF4352) LLY41_03720 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LLY41_03725 PF01047 MarR family LLY41_03730 PF03176 MMPL family LLY41_03735 PF00106 short chain dehydrogenase LLY41_03745 PF01327 Polypeptide deformylase LLY41_03765 PF00106 short chain dehydrogenase LLY41_03770 PF07454 Stage II sporulation protein P (SpoIIP) LLY41_03785 PF13115 YtkA-like LLY41_03800 PF05504 Spore germination B3/ GerAC like, C-terminal LLY41_03805 PF03845 Spore germination protein LLY41_03815 PF01497 Periplasmic binding protein LLY41_03820 PF01032 FecCD transport family LLY41_03825 PF01032 FecCD transport family LLY41_03830 PF00005 ABC transporter LLY41_03840 PF10835 Protein of unknown function (DUF2573) LLY41_03845 PF07875 Coat F domain LLY41_03860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLY41_03860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLY41_03860 PF00378 Enoyl-CoA hydratase/isomerase LLY41_03865 PF02803 Thiolase, C-terminal domain LLY41_03865 PF00108 Thiolase, N-terminal domain LLY41_03870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLY41_03870 PF02770 Acyl-CoA dehydrogenase, middle domain LLY41_03870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLY41_03875 PF03960 ArsC family LLY41_03880 PF01597 Glycine cleavage H-protein LLY41_03890 PF01751 Toprim domain LLY41_03895 PF00085 Thioredoxin LLY41_03905 PF01053 Cys/Met metabolism PLP-dependent enzyme LLY41_03910 PF00005 ABC transporter LLY41_03910 PF09383 NIL domain LLY41_03915 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_03920 PF03180 NLPA lipoprotein LLY41_03925 PF02627 Carboxymuconolactone decarboxylase family LLY41_03935 PF00005 ABC transporter LLY41_03940 PF01458 Uncharacterized protein family (UPF0051) LLY41_03945 PF00266 Aminotransferase class-V LLY41_03950 PF01592 NifU-like N terminal domain LLY41_03955 PF01458 Uncharacterized protein family (UPF0051) LLY41_03965 PF08827 Domain of unknown function (DUF1805) LLY41_03970 PF00072 Response regulator receiver domain LLY41_03975 PF09560 Sporulation protein YunB (Spo_YunB) LLY41_03980 PF03553 Na+/H+ antiporter family LLY41_03985 PF09557 Domain of unknown function (DUF2382) LLY41_03985 PF11181 Heat induced stress protein YflT LLY41_03990 PF00209 Sodium:neurotransmitter symporter family LLY41_04000 PF01551 Peptidase family M23 LLY41_04005 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LLY41_04005 PF04055 Radical SAM superfamily LLY41_04010 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LLY41_04015 PF06265 Protein of unknown function (DUF1027) LLY41_04030 PF01934 Protein of unknown function DUF86 LLY41_04040 PF13344 Haloacid dehalogenase-like hydrolase LLY41_04045 PF04608 Phosphatidylglycerophosphatase A LLY41_04055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLY41_04055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLY41_04060 PF00742 Homoserine dehydrogenase LLY41_04060 PF03447 Homoserine dehydrogenase, NAD binding domain LLY41_04060 PF01842 ACT domain LLY41_04065 PF00291 Pyridoxal-phosphate dependent enzyme LLY41_04070 PF08544 GHMP kinases C terminal LLY41_04070 PF00288 GHMP kinases N terminal domain LLY41_04080 PF07315 Protein of unknown function (DUF1462) LLY41_04085 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_04090 PF07293 Protein of unknown function (DUF1450) LLY41_04100 PF01521 Iron-sulphur cluster biosynthesis LLY41_04105 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_04110 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_04115 PF00293 NUDIX domain LLY41_04120 PF17302 Family of unknown function (DUF5351) LLY41_04125 PF14068 Putative membrane protein LLY41_04130 PF06725 3D domain LLY41_04140 PF02681 Divergent PAP2 family LLY41_04155 PF00883 Cytosol aminopeptidase family, catalytic domain LLY41_04155 PF02789 Cytosol aminopeptidase family, N-terminal domain LLY41_04160 PF13726 Na+-H+ antiporter family LLY41_04160 PF03553 Na+/H+ antiporter family LLY41_04165 PF00174 Oxidoreductase molybdopterin binding domain LLY41_04170 PF13411 MerR HTH family regulatory protein LLY41_04180 PF00561 alpha/beta hydrolase fold LLY41_04205 PF06018 CodY GAF-like domain LLY41_04205 PF17853 GGDEF-like domain LLY41_04205 PF13556 PucR C-terminal helix-turn-helix domain LLY41_04210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LLY41_04210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LLY41_04235 PF03061 Thioesterase superfamily LLY41_04240 PF03334 Na+/H+ antiporter subunit LLY41_04245 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LLY41_04250 PF01899 Na+/H+ ion antiporter subunit LLY41_04260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LLY41_04265 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LLY41_04270 PF13244 Domain of unknown function (DUF4040) LLY41_04270 PF00361 Proton-conducting membrane transporter LLY41_04270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LLY41_04285 PF00929 Exonuclease LLY41_04290 PF08810 Kinase associated protein B LLY41_04295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LLY41_04305 PF00080 Copper/zinc superoxide dismutase (SODC) LLY41_04310 PF08000 Bacterial PH domain LLY41_04315 PF00155 Aminotransferase class I and II LLY41_04325 PF00561 alpha/beta hydrolase fold LLY41_04325 PF08386 TAP-like protein LLY41_04330 PF01037 Lrp/AsnC ligand binding domain LLY41_04335 PF00155 Aminotransferase class I and II LLY41_04345 PF00575 S1 RNA binding domain LLY41_04350 PF03553 Na+/H+ antiporter family LLY41_04355 PF01152 Bacterial-like globin LLY41_04360 PF02954 Bacterial regulatory protein, Fis family LLY41_04360 PF13426 PAS domain LLY41_04360 PF00158 Sigma-54 interaction domain LLY41_04365 PF00171 Aldehyde dehydrogenase family LLY41_04370 PF00202 Aminotransferase class-III LLY41_04375 PF04070 Domain of unknown function (DUF378) LLY41_04380 PF00465 Iron-containing alcohol dehydrogenase LLY41_04385 PF00342 Phosphoglucose isomerase LLY41_04390 PF08868 YugN-like family LLY41_04405 PF02225 PA domain LLY41_04405 PF04389 Peptidase family M28 LLY41_04410 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LLY41_04410 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LLY41_04420 PF13460 NAD(P)H-binding LLY41_04430 PF01654 Cytochrome bd terminal oxidase subunit I LLY41_04435 PF02322 Cytochrome bd terminal oxidase subunit II LLY41_04445 PF02308 MgtC family LLY41_04580 PF00483 Nucleotidyl transferase LLY41_04590 PF08323 Starch synthase catalytic domain LLY41_04590 PF00534 Glycosyl transferases group 1 LLY41_04610 PF01258 Prokaryotic dksA/traR C4-type zinc finger LLY41_04615 PF01040 UbiA prenyltransferase family LLY41_04620 PF00425 chorismate binding enzyme LLY41_04625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LLY41_04625 PF16582 Middle domain of thiamine pyrophosphate LLY41_04625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LLY41_04630 PF00561 alpha/beta hydrolase fold LLY41_04635 PF00378 Enoyl-CoA hydratase/isomerase LLY41_04640 PF13193 AMP-binding enzyme C-terminal domain LLY41_04640 PF00501 AMP-binding enzyme LLY41_04645 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLY41_04645 PF13378 Enolase C-terminal domain-like LLY41_04650 PF07561 Domain of Unknown Function (DUF1540) LLY41_04655 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LLY41_04655 PF01297 Zinc-uptake complex component A periplasmic LLY41_04665 PF01809 Putative membrane protein insertion efficiency factor LLY41_04670 PF02664 S-Ribosylhomocysteinase (LuxS) LLY41_04675 PF13396 Phospholipase_D-nuclease N-terminal LLY41_04675 PF13091 PLD-like domain LLY41_04685 PF00210 Ferritin-like domain LLY41_04705 PF00293 NUDIX domain LLY41_04710 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_04715 PF00005 ABC transporter LLY41_04725 PF00326 Prolyl oligopeptidase family LLY41_04730 PF10763 Protein of unknown function (DUF2584) LLY41_04735 PF01293 Phosphoenolpyruvate carboxykinase LLY41_04745 PF02773 S-adenosylmethionine synthetase, C-terminal domain LLY41_04745 PF02772 S-adenosylmethionine synthetase, central domain LLY41_04745 PF00438 S-adenosylmethionine synthetase, N-terminal domain LLY41_04750 PF00733 Asparagine synthase LLY41_04750 PF13537 Glutamine amidotransferase domain LLY41_04755 PF13529 Peptidase_C39 like family LLY41_04760 PF00132 Bacterial transferase hexapeptide (six repeats) LLY41_04765 PF12146 Serine aminopeptidase, S33 LLY41_04770 PF10776 Protein of unknown function (DUF2600) LLY41_04775 PF06962 Putative rRNA methylase LLY41_04780 PF04055 Radical SAM superfamily LLY41_04780 PF16199 Radical_SAM C-terminal domain LLY41_04785 PF10732 Protein of unknown function (DUF2524) LLY41_04805 PF13426 PAS domain LLY41_04805 PF00158 Sigma-54 interaction domain LLY41_04805 PF02954 Bacterial regulatory protein, Fis family LLY41_04825 PF08264 Anticodon-binding domain of tRNA LLY41_04825 PF00133 tRNA synthetases class I (I, L, M and V) LLY41_04825 PF13603 Leucyl-tRNA synthetase, Domain 2 LLY41_04825 PF09334 tRNA synthetases class I (M) LLY41_04830 PF00581 Rhodanese-like domain LLY41_04835 PF10957 Sporulation protein Cse60 LLY41_04845 PF01943 Polysaccharide biosynthesis protein LLY41_04845 PF14667 Polysaccharide biosynthesis C-terminal domain LLY41_04850 PF01479 S4 domain LLY41_04850 PF00849 RNA pseudouridylate synthase LLY41_04855 PF08220 DeoR-like helix-turn-helix domain LLY41_04865 PF00005 ABC transporter LLY41_04870 PF05975 Bacterial ABC transporter protein EcsB LLY41_04875 PF01546 Peptidase family M20/M25/M40 LLY41_04880 PF01063 Amino-transferase class IV LLY41_04885 PF00291 Pyridoxal-phosphate dependent enzyme LLY41_04890 PF02834 LigT like Phosphoesterase LLY41_04900 PF00781 Diacylglycerol kinase catalytic domain LLY41_04915 PF14165 YtzH-like protein LLY41_04920 PF02390 Putative methyltransferase LLY41_04930 PF00753 Metallo-beta-lactamase superfamily LLY41_04935 PF03413 Peptidase propeptide and YPEB domain LLY41_04940 PF05343 M42 glutamyl aminopeptidase LLY41_04945 PF01931 Protein of unknown function DUF84 LLY41_04955 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ LLY41_04970 PF00085 Thioredoxin LLY41_04975 PF07285 Protein of unknown function (DUF1444) LLY41_04980 PF09397 Ftsk gamma domain LLY41_04980 PF17854 FtsK alpha domain LLY41_04980 PF01580 FtsK/SpoIIIE family LLY41_04990 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LLY41_04990 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LLY41_04995 PF01225 Mur ligase family, catalytic domain LLY41_04995 PF02875 Mur ligase family, glutamate ligase domain LLY41_04995 PF08245 Mur ligase middle domain LLY41_05000 PF02073 Thermophilic metalloprotease (M29) LLY41_05005 PF06103 Bacterial protein of unknown function (DUF948) LLY41_05010 PF12732 YtxH-like protein LLY41_05015 PF11009 Protein of unknown function (DUF2847) LLY41_05020 PF02491 SHS2 domain inserted in FTSA LLY41_05025 PF01817 Chorismate mutase type II LLY41_05025 PF00793 DAHP synthetase I family LLY41_05030 PF00356 Bacterial regulatory proteins, lacI family LLY41_05035 PF01618 MotA/TolQ/ExbB proton channel family LLY41_05040 PF00691 OmpA family LLY41_05040 PF13677 Membrane MotB of proton-channel complex MotA/MotB LLY41_05045 PF00850 Histone deacetylase domain LLY41_05050 PF00571 CBS domain LLY41_05055 PF00583 Acetyltransferase (GNAT) family LLY41_05060 PF00501 AMP-binding enzyme LLY41_05060 PF13193 AMP-binding enzyme C-terminal domain LLY41_05065 PF00912 Transglycosylase LLY41_05065 PF00905 Penicillin binding protein transpeptidase domain LLY41_05075 PF00163 Ribosomal protein S4/S9 N-terminal domain LLY41_05075 PF01479 S4 domain LLY41_05090 PF13185 GAF domain LLY41_05095 PF00440 Bacterial regulatory proteins, tetR family LLY41_05100 PF02811 PHP domain LLY41_05105 PF06160 Septation ring formation regulator, EzrA LLY41_05110 PF05525 Branched-chain amino acid transport protein LLY41_05115 PF00266 Aminotransferase class-V LLY41_05120 PF02926 THUMP domain LLY41_05120 PF02568 Thiamine biosynthesis protein (ThiI) LLY41_05125 PF00269 Small, acid-soluble spore proteins, alpha/beta type LLY41_05140 PF00892 EamA-like transporter family LLY41_05145 PF01513 ATP-NAD kinase LLY41_05150 PF01343 Peptidase family S49 LLY41_05155 PF06271 RDD family LLY41_05160 PF11167 Protein of unknown function (DUF2953) LLY41_05165 PF09579 Sporulation protein YtfJ (Spore_YtfJ) LLY41_05170 PF08534 Redoxin LLY41_05175 PF02384 N-6 DNA Methylase LLY41_05180 PF00871 Acetokinase family LLY41_05190 PF00994 Probable molybdopterin binding domain LLY41_05200 PF00144 Beta-lactamase LLY41_05205 PF00764 Arginosuccinate synthase LLY41_05210 PF14698 Argininosuccinate lyase C-terminal LLY41_05210 PF00206 Lyase LLY41_05215 PF00582 Universal stress protein family LLY41_05225 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LLY41_05225 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LLY41_05230 PF01321 Creatinase/Prolidase N-terminal domain LLY41_05230 PF00557 Metallopeptidase family M24 LLY41_05245 PF03061 Thioesterase superfamily LLY41_05245 PF00571 CBS domain LLY41_05245 PF00392 Bacterial regulatory proteins, gntR family LLY41_05245 PF07085 DRTGG domain LLY41_05255 PF01368 DHH family LLY41_05255 PF02272 DHHA1 domain LLY41_05265 PF14034 Sporulation protein YtrH LLY41_05275 PF00390 Malic enzyme, N-terminal domain LLY41_05275 PF03949 Malic enzyme, NAD binding domain LLY41_05280 PF07729 FCD domain LLY41_05280 PF00392 Bacterial regulatory proteins, gntR family LLY41_05285 PF01039 Carboxyl transferase domain LLY41_05285 PF17848 Acetyl-coA carboxylase zinc finger domain LLY41_05290 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LLY41_05295 PF00365 Phosphofructokinase LLY41_05300 PF02887 Pyruvate kinase, alpha/beta domain LLY41_05300 PF00224 Pyruvate kinase, barrel domain LLY41_05300 PF00391 PEP-utilising enzyme, mobile domain LLY41_05305 PF04186 FxsA cytoplasmic membrane protein LLY41_05315 PF04284 Protein of unknown function (DUF441) LLY41_05320 PF00285 Citrate synthase, C-terminal domain LLY41_05325 PF00180 Isocitrate/isopropylmalate dehydrogenase LLY41_05330 PF00056 lactate/malate dehydrogenase, NAD binding domain LLY41_05330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LLY41_05340 PF00072 Response regulator receiver domain LLY41_05340 PF00486 Transcriptional regulatory protein, C terminal LLY41_05345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_05345 PF00512 His Kinase A (phospho-acceptor) domain LLY41_05345 PF00989 PAS fold LLY41_05345 PF16736 Single Cache-like LLY41_05350 PF12221 Bacterial membrane protein N terminal LLY41_05350 PF01145 SPFH domain / Band 7 family LLY41_05355 PF01145 SPFH domain / Band 7 family LLY41_05360 PF00476 DNA polymerase family A LLY41_05360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LLY41_05360 PF01367 5'-3' exonuclease, C-terminal SAM fold LLY41_05365 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LLY41_05365 PF06827 Zinc finger found in FPG and IleRS LLY41_05365 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LLY41_05370 PF02659 Putative manganese efflux pump LLY41_05375 PF01121 Dephospho-CoA kinase LLY41_05380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LLY41_05380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LLY41_05385 PF02675 S-adenosylmethionine decarboxylase LLY41_05395 PF03477 ATP cone domain LLY41_05400 PF07261 Replication initiation and membrane attachment LLY41_05405 PF07319 Primosomal protein DnaI N-terminus LLY41_05405 PF01695 IstB-like ATP binding protein LLY41_05410 PF08812 YtxC-like family LLY41_05415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LLY41_05415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LLY41_05415 PF02824 TGS domain LLY41_05415 PF03129 Anticodon binding domain LLY41_05420 PF00707 Translation initiation factor IF-3, C-terminal domain LLY41_05420 PF05198 Translation initiation factor IF-3, N-terminal domain LLY41_05425 PF01632 Ribosomal protein L35 LLY41_05430 PF00453 Ribosomal protein L20 LLY41_05435 PF06961 Protein of unknown function (DUF1294) LLY41_05455 PF05343 M42 glutamyl aminopeptidase LLY41_05465 PF00588 SpoU rRNA Methylase family LLY41_05465 PF08032 RNA 2'-O ribose methyltransferase substrate binding LLY41_05470 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LLY41_05470 PF01409 tRNA synthetases class II core domain (F) LLY41_05475 PF03483 B3/4 domain LLY41_05475 PF03484 tRNA synthetase B5 domain LLY41_05475 PF03147 Ferredoxin-fold anticodon binding domain LLY41_05475 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LLY41_05475 PF01588 Putative tRNA binding domain LLY41_05480 PF11858 Domain of unknown function (DUF3378) LLY41_05480 PF01351 Ribonuclease HII LLY41_05485 PF05164 Cell division protein ZapA LLY41_05490 PF02674 Colicin V production protein LLY41_05495 PF14791 DNA polymerase beta thumb LLY41_05495 PF14716 Helix-hairpin-helix domain LLY41_05495 PF02811 PHP domain LLY41_05500 PF00488 MutS domain V LLY41_05500 PF01713 Smr domain LLY41_05505 PF03994 Domain of Unknown Function (DUF350) LLY41_05510 PF13193 AMP-binding enzyme C-terminal domain LLY41_05510 PF00501 AMP-binding enzyme LLY41_05515 PF08359 YsiA-like protein, C-terminal region LLY41_05515 PF00440 Bacterial regulatory proteins, tetR family LLY41_05520 PF00378 Enoyl-CoA hydratase/isomerase LLY41_05525 PF01012 Electron transfer flavoprotein domain LLY41_05530 PF01012 Electron transfer flavoprotein domain LLY41_05530 PF00766 Electron transfer flavoprotein FAD-binding domain LLY41_05535 PF00085 Thioredoxin LLY41_05540 PF01541 GIY-YIG catalytic domain LLY41_05540 PF08459 UvrC Helix-hairpin-helix N-terminal LLY41_05540 PF02151 UvrB/uvrC motif LLY41_05545 PF13840 ACT domain LLY41_05545 PF00696 Amino acid kinase family LLY41_05550 PF10702 Protein of unknown function (DUF2507) LLY41_05555 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LLY41_05565 PF13183 4Fe-4S dicluster domain LLY41_05565 PF13085 2Fe-2S iron-sulfur cluster binding domain LLY41_05570 PF03061 Thioesterase superfamily LLY41_05575 PF00196 Bacterial regulatory proteins, luxR family LLY41_05580 PF01047 MarR family LLY41_05585 PF01177 Asp/Glu/Hydantoin racemase LLY41_05590 PF00271 Helicase conserved C-terminal domain LLY41_05590 PF00270 DEAD/DEAH box helicase LLY41_05590 PF00570 HRDC domain LLY41_05590 PF16124 RecQ zinc-binding LLY41_05590 PF09382 RQC domain LLY41_05595 PF10646 Sporulation and spore germination LLY41_05600 PF03725 3' exoribonuclease family, domain 2 LLY41_05600 PF01138 3' exoribonuclease family, domain 1 LLY41_05605 PF01725 Ham1 family LLY41_05610 PF12850 Calcineurin-like phosphoesterase superfamily domain LLY41_05620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LLY41_05620 PF00205 Thiamine pyrophosphate enzyme, central domain LLY41_05620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LLY41_05625 PF01842 ACT domain LLY41_05625 PF10369 Small subunit of acetolactate synthase LLY41_05630 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LLY41_05630 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LLY41_05635 PF08502 LeuA allosteric (dimerisation) domain LLY41_05635 PF00682 HMGL-like LLY41_05640 PF00180 Isocitrate/isopropylmalate dehydrogenase LLY41_05645 PF00330 Aconitase family (aconitate hydratase) LLY41_05650 PF00694 Aconitase C-terminal domain LLY41_05660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LLY41_05660 PF05697 Bacterial trigger factor protein (TF) LLY41_05660 PF05698 Bacterial trigger factor protein (TF) C-terminus LLY41_05665 PF10431 C-terminal, D2-small domain, of ClpB protein LLY41_05665 PF07724 AAA domain (Cdc48 subfamily) LLY41_05665 PF06689 ClpX C4-type zinc finger LLY41_05670 PF05362 Lon protease (S16) C-terminal proteolytic domain LLY41_05670 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_05675 PF05362 Lon protease (S16) C-terminal proteolytic domain LLY41_05675 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_05675 PF02190 ATP-dependent protease La (LON) substrate-binding domain LLY41_05680 PF01926 50S ribosome-binding GTPase LLY41_05685 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLY41_05690 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_05705 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LLY41_05705 PF01488 Shikimate / quinate 5-dehydrogenase LLY41_05705 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LLY41_05710 PF01578 Cytochrome C assembly protein LLY41_05715 PF03900 Porphobilinogen deaminase, C-terminal domain LLY41_05715 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LLY41_05725 PF00490 Delta-aminolevulinic acid dehydratase LLY41_05730 PF00202 Aminotransferase class-III LLY41_05735 PF01476 LysM domain LLY41_05735 PF01476 LysM domain LLY41_05750 PF10458 Valyl tRNA synthetase tRNA binding arm LLY41_05750 PF00133 tRNA synthetases class I (I, L, M and V) LLY41_05750 PF08264 Anticodon-binding domain of tRNA LLY41_05755 PF08245 Mur ligase middle domain LLY41_05755 PF02875 Mur ligase family, glutamate ligase domain LLY41_05760 PF00990 Diguanylate cyclase, GGDEF domain LLY41_05760 PF00072 Response regulator receiver domain LLY41_05805 PF00437 Type II/IV secretion system protein LLY41_05810 PF00482 Type II secretion system (T2SS), protein F LLY41_05815 PF07963 Prokaryotic N-terminal methylation motif LLY41_05815 PF00114 Pilin (bacterial filament) LLY41_05820 PF06750 Bacterial Peptidase A24 N-terminal domain LLY41_05820 PF01478 Type IV leader peptidase family LLY41_05850 PF02545 Maf-like protein LLY41_05855 PF04002 RadC-like JAB domain LLY41_05865 PF04085 rod shape-determining protein MreC LLY41_05875 PF03775 Septum formation inhibitor MinC, C-terminal domain LLY41_05880 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LLY41_05885 PF01551 Peptidase family M23 LLY41_05890 PF02163 Peptidase family M50 LLY41_05895 PF10150 Ribonuclease E/G family LLY41_05895 PF00575 S1 RNA binding domain LLY41_05900 PF00829 Ribosomal prokaryotic L21 protein LLY41_05905 PF04327 Cysteine protease Prp LLY41_05910 PF01016 Ribosomal L27 protein LLY41_05915 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LLY41_05915 PF14682 Sporulation initiation phospho-transferase B, C-terminal LLY41_05920 PF09269 Domain of unknown function (DUF1967) LLY41_05920 PF01926 50S ribosome-binding GTPase LLY41_05920 PF01018 GTP1/OBG LLY41_05925 PF01842 ACT domain LLY41_05930 PF00800 Prephenate dehydratase LLY41_05930 PF01842 ACT domain LLY41_05935 PF08279 HTH domain LLY41_05935 PF02829 3H domain LLY41_05940 PF00266 Aminotransferase class-V LLY41_05955 PF02445 Quinolinate synthetase A protein LLY41_05960 PF01476 LysM domain LLY41_05975 PF08955 BofC C-terminal domain LLY41_05975 PF08977 Bypass of Forespore C, N terminal LLY41_05980 PF00589 Phage integrase family LLY41_05990 PF13244 Domain of unknown function (DUF4040) LLY41_05990 PF00361 Proton-conducting membrane transporter LLY41_05990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LLY41_05995 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LLY41_06000 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LLY41_06010 PF01899 Na+/H+ ion antiporter subunit LLY41_06015 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LLY41_06020 PF03334 Na+/H+ antiporter subunit LLY41_06025 PF01330 RuvA N terminal domain LLY41_06025 PF07499 RuvA, C-terminal domain LLY41_06030 PF17864 RuvB AAA lid domain LLY41_06030 PF05491 RuvB C-terminal winged helix domain LLY41_06030 PF05496 Holliday junction DNA helicase RuvB P-loop domain LLY41_06035 PF11146 Protein of unknown function (DUF2905) LLY41_06040 PF02547 Queuosine biosynthesis protein LLY41_06045 PF01702 Queuine tRNA-ribosyltransferase LLY41_06050 PF02699 Preprotein translocase subunit LLY41_06060 PF12670 Protein of unknown function (DUF3792) LLY41_06065 PF04239 Protein of unknown function (DUF421) LLY41_06070 PF01943 Polysaccharide biosynthesis protein LLY41_06070 PF14667 Polysaccharide biosynthesis C-terminal domain LLY41_06085 PF01545 Cation efflux family LLY41_06085 PF16916 Dimerisation domain of Zinc Transporter LLY41_06090 PF06305 Lipopolysaccharide assembly protein A domain LLY41_06095 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LLY41_06095 PF01368 DHH family LLY41_06095 PF02272 DHHA1 domain LLY41_06095 PF17768 RecJ OB domain LLY41_06100 PF00156 Phosphoribosyl transferase domain LLY41_06110 PF02580 D-Tyr-tRNA(Tyr) deacylase LLY41_06115 PF01520 N-acetylmuramoyl-L-alanine amidase LLY41_06115 PF08239 Bacterial SH3 domain LLY41_06125 PF03129 Anticodon binding domain LLY41_06125 PF13393 Histidyl-tRNA synthetase LLY41_06130 PF00152 tRNA synthetases class II (D, K and N) LLY41_06130 PF01336 OB-fold nucleic acid binding domain LLY41_06130 PF02938 GAD domain LLY41_06140 PF00899 ThiF family LLY41_06150 PF00005 ABC transporter LLY41_06155 PF12679 ABC-2 family transporter protein LLY41_06160 PF16193 AAA C-terminal domain LLY41_06160 PF12002 MgsA AAA+ ATPase C terminal LLY41_06160 PF05496 Holliday junction DNA helicase RuvB P-loop domain LLY41_06165 PF02082 Transcriptional regulator LLY41_06170 PF00266 Aminotransferase class-V LLY41_06185 PF14490 Helix-hairpin-helix containing domain LLY41_06185 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LLY41_06185 PF13538 UvrD-like helicase C-terminal domain LLY41_06210 PF01594 AI-2E family transporter LLY41_06215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LLY41_06215 PF02272 DHHA1 domain LLY41_06215 PF01411 tRNA synthetases class II (A) LLY41_06220 PF06135 IreB regulatory phosphoprotein LLY41_06225 PF03652 Holliday junction resolvase LLY41_06230 PF06949 Protein of unknown function (DUF1292) LLY41_06235 PF02618 YceG-like family LLY41_06240 PF01596 O-methyltransferase LLY41_06245 PF01136 Peptidase family U32 LLY41_06250 PF01136 Peptidase family U32 LLY41_06250 PF16325 Peptidase family U32 C-terminal domain LLY41_06255 PF00485 Phosphoribulokinase / Uridine kinase family LLY41_06260 PF03449 Transcription elongation factor, N-terminal LLY41_06260 PF01272 Transcription elongation factor, GreA/GreB, C-term LLY41_06265 PF03717 Penicillin-binding Protein dimerisation domain LLY41_06265 PF00905 Penicillin binding protein transpeptidase domain LLY41_06280 PF01048 Phosphorylase superfamily LLY41_06290 PF09501 Probable sporulation protein (Bac_small_yrzI) LLY41_06295 PF04542 Sigma-70 region 2 LLY41_06295 PF04545 Sigma-70, region 4 LLY41_06315 PF01066 CDP-alcohol phosphatidyltransferase LLY41_06320 PF02666 Phosphatidylserine decarboxylase LLY41_06325 PF08970 Sporulation inhibitor A LLY41_06335 PF01926 50S ribosome-binding GTPase LLY41_06340 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LLY41_06340 PF01488 Shikimate / quinate 5-dehydrogenase LLY41_06340 PF08501 Shikimate dehydrogenase substrate binding domain LLY41_06345 PF01985 CRS1 / YhbY (CRM) domain LLY41_06350 PF01467 Cytidylyltransferase-like LLY41_06355 PF01966 HD domain LLY41_06365 PF13649 Methyltransferase domain LLY41_06370 PF03807 NADP oxidoreductase coenzyme F420-dependent LLY41_06370 PF14748 Pyrroline-5-carboxylate reductase dimerisation LLY41_06375 PF10531 SLBB domain LLY41_06380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LLY41_06385 PF03772 Competence protein LLY41_06385 PF13567 Domain of unknown function (DUF4131) LLY41_06385 PF00753 Metallo-beta-lactamase superfamily LLY41_06390 PF14141 YqzM-like protein LLY41_06395 PF06144 DNA polymerase III, delta subunit LLY41_06400 PF01649 Ribosomal protein S20 LLY41_06405 PF03418 Germination protease LLY41_06415 PF12438 Protein of unknown function (DUF3679) LLY41_06420 PF06421 GTP-binding protein LepA C-terminus LLY41_06420 PF00679 Elongation factor G C-terminus LLY41_06420 PF00009 Elongation factor Tu GTP binding domain LLY41_06420 PF03144 Elongation factor Tu domain 2 LLY41_06425 PF04055 Radical SAM superfamily LLY41_06425 PF06969 HemN C-terminal domain LLY41_06430 PF01628 HrcA protein C terminal domain LLY41_06435 PF01025 GrpE LLY41_06440 PF00012 Hsp70 protein LLY41_06445 PF00226 DnaJ domain LLY41_06445 PF01556 DnaJ C terminal domain LLY41_06445 PF00684 DnaJ central domain LLY41_06455 PF04452 RNA methyltransferase LLY41_06460 PF04055 Radical SAM superfamily LLY41_06460 PF01938 TRAM domain LLY41_06460 PF00919 Uncharacterized protein family UPF0004 LLY41_06465 PF01791 DeoC/LacD family aldolase LLY41_06470 PF02690 Na+/Pi-cotransporter LLY41_06475 PF01165 Ribosomal protein S21 LLY41_06480 PF09424 Yqey-like protein LLY41_06485 PF01957 NfeD-like C-terminal, partner-binding LLY41_06485 PF01972 Serine dehydrogenase proteinase LLY41_06490 PF12127 SigmaW regulon antibacterial LLY41_06500 PF07873 YabP family LLY41_06505 PF06898 Putative stage IV sporulation protein YqfD LLY41_06510 PF02562 PhoH-like protein LLY41_06520 PF01966 HD domain LLY41_06520 PF07697 7TM-HD extracellular LLY41_06520 PF07698 7TM receptor with intracellular HD hydrolase LLY41_06525 PF02130 Uncharacterized protein family UPF0054 LLY41_06530 PF01219 Prokaryotic diacylglycerol kinase LLY41_06535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LLY41_06540 PF07650 KH domain LLY41_06540 PF01926 50S ribosome-binding GTPase LLY41_06545 PF14006 YqzL-like protein LLY41_06550 PF02565 Recombination protein O C terminal LLY41_06550 PF11967 Recombination protein O N terminal LLY41_06555 PF02091 Glycyl-tRNA synthetase alpha subunit LLY41_06560 PF02092 Glycyl-tRNA synthetase beta subunit LLY41_06565 PF00571 CBS domain LLY41_06565 PF08279 HTH domain LLY41_06570 PF03618 Kinase/pyrophosphorylase LLY41_06580 PF10410 DnaB-helicase binding domain of primase LLY41_06580 PF08275 DNA primase catalytic core, N-terminal domain LLY41_06580 PF01807 CHC2 zinc finger LLY41_06585 PF04542 Sigma-70 region 2 LLY41_06585 PF04545 Sigma-70, region 4 LLY41_06585 PF03979 Sigma-70 factor, region 1.1 LLY41_06585 PF00140 Sigma-70 factor, region 1.2 LLY41_06585 PF04539 Sigma-70 region 3 LLY41_06595 PF02770 Acyl-CoA dehydrogenase, middle domain LLY41_06595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLY41_06595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLY41_06600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLY41_06610 PF01784 NIF3 (NGG1p interacting factor 3) LLY41_06615 PF02401 LytB protein LLY41_06625 PF00270 DEAD/DEAH box helicase LLY41_06625 PF00271 Helicase conserved C-terminal domain LLY41_06630 PF01261 Xylose isomerase-like TIM barrel LLY41_06635 PF11116 Protein of unknown function (DUF2624) LLY41_06640 PF00005 ABC transporter LLY41_06645 PF00950 ABC 3 transport family LLY41_06650 PF01475 Ferric uptake regulator family LLY41_06665 PF04551 GcpE protein LLY41_06675 PF06691 Protein of unknown function (DUF1189) LLY41_06680 PF02690 Na+/Pi-cotransporter LLY41_06685 PF04306 Protein of unknown function (DUF456) LLY41_06690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LLY41_06690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LLY41_06695 PF07690 Major Facilitator Superfamily LLY41_06700 PF00905 Penicillin binding protein transpeptidase domain LLY41_06700 PF03717 Penicillin-binding Protein dimerisation domain LLY41_06705 PF12849 PBP superfamily domain LLY41_06710 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_06715 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_06720 PF00005 ABC transporter LLY41_06725 PF01895 PhoU domain LLY41_06745 PF13439 Glycosyltransferase Family 4 LLY41_06745 PF00534 Glycosyl transferases group 1 LLY41_06755 PF00471 Ribosomal protein L33 LLY41_06760 PF01812 5-formyltetrahydrofolate cyclo-ligase family LLY41_06770 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LLY41_06770 PF00056 lactate/malate dehydrogenase, NAD binding domain LLY41_06780 PF01694 Rhomboid family LLY41_06785 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_06795 PF00480 ROK family LLY41_06800 PF01476 LysM domain LLY41_06800 PF00246 Zinc carboxypeptidase LLY41_06810 PF01910 Thiamine-binding protein LLY41_06815 PF10958 Protein of unknown function (DUF2759) LLY41_06825 PF00753 Metallo-beta-lactamase superfamily LLY41_06835 PF11117 Protein of unknown function (DUF2626) LLY41_06845 PF03960 ArsC family LLY41_06855 PF00437 Type II/IV secretion system protein LLY41_06860 PF00482 Type II secretion system (T2SS), protein F LLY41_06865 PF07963 Prokaryotic N-terminal methylation motif LLY41_06870 PF07963 Prokaryotic N-terminal methylation motif LLY41_06890 PF01202 Shikimate kinase LLY41_06895 PF14038 YqzE-like protein LLY41_06900 PF11079 Bacterial protein YqhG of unknown function LLY41_06905 PF00271 Helicase conserved C-terminal domain LLY41_06905 PF00176 SNF2 family N-terminal domain LLY41_06910 PF01571 Aminomethyltransferase folate-binding domain LLY41_06910 PF08669 Glycine cleavage T-protein C-terminal barrel domain LLY41_06920 PF02347 Glycine cleavage system P-protein LLY41_06925 PF00581 Rhodanese-like domain LLY41_06930 PF03099 Biotin/lipoate A/B protein ligase family LLY41_06935 PF02867 Ribonucleotide reductase, barrel domain LLY41_06935 PF00317 Ribonucleotide reductase, all-alpha domain LLY41_06935 PF03477 ATP cone domain LLY41_06945 PF01734 Patatin-like phospholipase LLY41_06955 PF11085 Conserved membrane protein YqhR LLY41_06960 PF01220 Dehydroquinase class II LLY41_06965 PF01321 Creatinase/Prolidase N-terminal domain LLY41_06965 PF00557 Metallopeptidase family M24 LLY41_06970 PF09285 Elongation factor P, C-terminal LLY41_06970 PF01132 Elongation factor P (EF-P) OB domain LLY41_06970 PF08207 Elongation factor P (EF-P) KOW-like domain LLY41_06985 PF00245 Alkaline phosphatase LLY41_06995 PF09548 Stage III sporulation protein AB (spore_III_AB) LLY41_07000 PF06686 Stage III sporulation protein AC/AD protein family LLY41_07005 PF06686 Stage III sporulation protein AC/AD protein family LLY41_07010 PF09546 Stage III sporulation protein AE (spore_III_AE) LLY41_07015 PF09581 Stage III sporulation protein AF (Spore_III_AF) LLY41_07025 PF12685 SpoIIIAH-like protein LLY41_07030 PF00364 Biotin-requiring enzyme LLY41_07035 PF00289 Biotin carboxylase, N-terminal domain LLY41_07035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLY41_07035 PF02785 Biotin carboxylase C-terminal domain LLY41_07040 PF03780 Asp23 family, cell envelope-related function LLY41_07045 PF01029 NusB family LLY41_07050 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LLY41_07050 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LLY41_07055 PF02601 Exonuclease VII, large subunit LLY41_07055 PF13742 OB-fold nucleic acid binding domain LLY41_07060 PF02609 Exonuclease VII small subunit LLY41_07065 PF00348 Polyprenyl synthetase LLY41_07075 PF01728 FtsJ-like methyltransferase LLY41_07075 PF01479 S4 domain LLY41_07080 PF01316 Arginine repressor, DNA binding domain LLY41_07080 PF02863 Arginine repressor, C-terminal domain LLY41_07090 PF17820 PDZ domain LLY41_07090 PF05580 SpoIVB peptidase S55 LLY41_07095 PF00072 Response regulator receiver domain LLY41_07095 PF08769 Sporulation initiation factor Spo0A C terminal LLY41_07100 PF14174 YycC-like protein LLY41_07105 PF11118 Protein of unknown function (DUF2627) LLY41_07110 PF02954 Bacterial regulatory protein, Fis family LLY41_07110 PF00989 PAS fold LLY41_07110 PF00158 Sigma-54 interaction domain LLY41_07115 PF01515 Phosphate acetyl/butaryl transferase LLY41_07120 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LLY41_07120 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LLY41_07125 PF00871 Acetokinase family LLY41_07130 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_07130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLY41_07135 PF00676 Dehydrogenase E1 component LLY41_07140 PF02779 Transketolase, pyrimidine binding domain LLY41_07140 PF02780 Transketolase, C-terminal domain LLY41_07145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLY41_07145 PF00364 Biotin-requiring enzyme LLY41_07145 PF02817 e3 binding domain LLY41_07150 PF01642 Methylmalonyl-CoA mutase LLY41_07155 PF02310 B12 binding domain LLY41_07155 PF01642 Methylmalonyl-CoA mutase LLY41_07165 PF06491 Disulphide isomerase LLY41_07170 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLY41_07175 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_07180 PF00005 ABC transporter LLY41_07190 PF03734 L,D-transpeptidase catalytic domain LLY41_07205 PF01039 Carboxyl transferase domain LLY41_07210 PF07687 Peptidase dimerisation domain LLY41_07210 PF01546 Peptidase family M20/M25/M40 LLY41_07215 PF01584 CheW-like domain LLY41_07220 PF11798 IMS family HHH motif LLY41_07220 PF00817 impB/mucB/samB family LLY41_07220 PF11799 impB/mucB/samB family C-terminal domain LLY41_07225 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LLY41_07225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LLY41_07230 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LLY41_07230 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LLY41_07235 PF00753 Metallo-beta-lactamase superfamily LLY41_07235 PF12706 Beta-lactamase superfamily domain LLY41_07245 PF00209 Sodium:neurotransmitter symporter family LLY41_07250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLY41_07260 PF03807 NADP oxidoreductase coenzyme F420-dependent LLY41_07260 PF14748 Pyrroline-5-carboxylate reductase dimerisation LLY41_07265 PF00753 Metallo-beta-lactamase superfamily LLY41_07270 PF00106 short chain dehydrogenase LLY41_07280 PF08863 YolD-like protein LLY41_07290 PF01521 Iron-sulphur cluster biosynthesis LLY41_07305 PF00682 HMGL-like LLY41_07315 PF01144 Coenzyme A transferase LLY41_07320 PF01144 Coenzyme A transferase LLY41_07335 PF00248 Aldo/keto reductase family LLY41_07340 PF13072 Mother cell inhibitor of FtsZ LLY41_07345 PF00293 NUDIX domain LLY41_07360 PF01944 Stage II sporulation protein M LLY41_07365 PF01475 Ferric uptake regulator family LLY41_07370 PF14004 Protein of unknown function (DUF4227) LLY41_07375 PF02899 Phage integrase, N-terminal SAM-like domain LLY41_07375 PF00589 Phage integrase family LLY41_07380 PF01676 Metalloenzyme superfamily LLY41_07385 PF01048 Phosphorylase superfamily LLY41_07390 PF02885 Glycosyl transferase family, helical bundle domain LLY41_07390 PF00591 Glycosyl transferase family, a/b domain LLY41_07390 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LLY41_07400 PF01740 STAS domain LLY41_07405 PF13581 Histidine kinase-like ATPase domain LLY41_07410 PF04539 Sigma-70 region 3 LLY41_07410 PF04545 Sigma-70, region 4 LLY41_07410 PF04542 Sigma-70 region 2 LLY41_07415 PF12164 Stage V sporulation protein AA LLY41_07420 PF13782 Stage V sporulation protein AB LLY41_07425 PF14097 Stage V sporulation protein AE1 LLY41_07430 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_07435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LLY41_07435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LLY41_07440 PF06207 Protein of unknown function (DUF1002) LLY41_07445 PF00583 Acetyltransferase (GNAT) family LLY41_07450 PF03745 Domain of unknown function (DUF309) LLY41_07460 PF02616 Segregation and condensation protein ScpA LLY41_07465 PF04079 Segregation and condensation complex subunit ScpB LLY41_07475 PF13047 Protein of unknown function (DUF3907) LLY41_07480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LLY41_07480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LLY41_07485 PF07943 Penicillin-binding protein 5, C-terminal domain LLY41_07485 PF00768 D-alanyl-D-alanine carboxypeptidase LLY41_07490 PF07670 Nucleoside recognition LLY41_07500 PF01479 S4 domain LLY41_07500 PF00849 RNA pseudouridylate synthase LLY41_07505 PF00578 AhpC/TSA family LLY41_07510 PF05140 ResB-like family LLY41_07515 PF01578 Cytochrome C assembly protein LLY41_07520 PF00072 Response regulator receiver domain LLY41_07520 PF00486 Transcriptional regulatory protein, C terminal LLY41_07525 PF00989 PAS fold LLY41_07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_07525 PF00672 HAMP domain LLY41_07525 PF00512 His Kinase A (phospho-acceptor) domain LLY41_07525 PF18698 Histidine kinase sensor domain LLY41_07530 PF08281 Sigma-70, region 4 LLY41_07530 PF04542 Sigma-70 region 2 LLY41_07540 PF10145 Phage-related minor tail protein LLY41_07540 PF01464 Transglycosylase SLT domain LLY41_07540 PF01551 Peptidase family M23 LLY41_07545 PF02811 PHP domain LLY41_07550 PF12822 ECF transporter, substrate-specific component LLY41_07560 PF14493 Helix-turn-helix domain LLY41_07565 PF00270 DEAD/DEAH box helicase LLY41_07565 PF00271 Helicase conserved C-terminal domain LLY41_07570 PF02517 CPBP intramembrane metalloprotease LLY41_07580 PF10864 Protein of unknown function (DUF2663) LLY41_07585 PF05067 Manganese containing catalase LLY41_07590 PF12652 CotJB protein LLY41_07595 PF11007 Spore coat associated protein JA (CotJA) LLY41_07610 PF00149 Calcineurin-like phosphoesterase LLY41_07615 PF02310 B12 binding domain LLY41_07615 PF02607 B12 binding domain LLY41_07615 PF13411 MerR HTH family regulatory protein LLY41_07620 PF05389 Negative regulator of genetic competence (MecA) LLY41_07625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LLY41_07625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LLY41_07635 PF00710 Asparaginase, N-terminal LLY41_07635 PF17763 Glutaminase/Asparaginase C-terminal domain LLY41_07665 PF02224 Cytidylate kinase LLY41_07670 PF01553 Acyltransferase LLY41_07675 PF00575 S1 RNA binding domain LLY41_07685 PF14140 YpzI-like protein LLY41_07695 PF14045 YIEGIA protein LLY41_07705 PF01926 50S ribosome-binding GTPase LLY41_07705 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LLY41_07710 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LLY41_07710 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LLY41_07715 PF10966 Protein of unknown function (DUF2768) LLY41_07725 PF09547 Stage IV sporulation protein A (spore_IV_A) LLY41_07730 PF00216 Bacterial DNA-binding protein LLY41_07735 PF01227 GTP cyclohydrolase I LLY41_07740 PF02081 Tryptophan RNA-binding attenuator protein LLY41_07745 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 LLY41_07750 PF01209 ubiE/COQ5 methyltransferase family LLY41_07760 PF00334 Nucleoside diphosphate kinase LLY41_07765 PF01739 CheR methyltransferase, SAM binding domain LLY41_07765 PF03705 CheR methyltransferase, all-alpha domain LLY41_07770 PF01264 Chorismate synthase LLY41_07775 PF01761 3-dehydroquinate synthase LLY41_07780 PF07736 Chorismate mutase type I LLY41_07785 PF00155 Aminotransferase class I and II LLY41_07790 PF02153 Prephenate dehydrogenase LLY41_07790 PF01842 ACT domain LLY41_07810 PF08858 IDEAL domain LLY41_07810 PF08864 UPF0302 domain LLY41_07815 PF10673 Protein of unknown function (DUF2487) LLY41_07820 PF00355 Rieske [2Fe-2S] domain LLY41_07825 PF00033 Cytochrome b/b6/petB LLY41_07830 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLY41_07830 PF00032 Cytochrome b(C-terminal)/b6/petD LLY41_07835 PF07187 Protein of unknown function (DUF1405) LLY41_07840 PF09577 Sporulation protein YpjB (SpoYpjB) LLY41_07845 PF04298 Putative neutral zinc metallopeptidase LLY41_07850 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LLY41_07850 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LLY41_07855 PF03819 MazG nucleotide pyrophosphohydrolase domain LLY41_07860 PF01113 Dihydrodipicolinate reductase, N-terminus LLY41_07860 PF05173 Dihydrodipicolinate reductase, C-terminus LLY41_07870 PF02585 GlcNAc-PI de-N-acetylase LLY41_07875 PF13439 Glycosyltransferase Family 4 LLY41_07875 PF00534 Glycosyl transferases group 1 LLY41_07880 PF01743 Poly A polymerase head domain LLY41_07880 PF12627 Probable RNA and SrmB- binding site of polymerase A LLY41_07880 PF13735 tRNA nucleotidyltransferase domain 2 putative LLY41_07885 PF02237 Biotin protein ligase C terminal domain LLY41_07885 PF03099 Biotin/lipoate A/B protein ligase family LLY41_07885 PF08279 HTH domain LLY41_07890 PF02548 Ketopantoate hydroxymethyltransferase LLY41_07895 PF02569 Pantoate-beta-alanine ligase LLY41_07900 PF02261 Aspartate decarboxylase LLY41_07905 PF04851 Type III restriction enzyme, res subunit LLY41_07905 PF00929 Exonuclease LLY41_07905 PF13307 Helicase C-terminal domain LLY41_07915 PF14084 Protein of unknown function (DUF4264) LLY41_07930 PF01336 OB-fold nucleic acid binding domain LLY41_07930 PF00152 tRNA synthetases class II (D, K and N) LLY41_07935 PF07261 Replication initiation and membrane attachment LLY41_07940 PF10576 Iron-sulfur binding domain of endonuclease III LLY41_07940 PF00633 Helix-hairpin-helix motif LLY41_07940 PF00730 HhH-GPD superfamily base excision DNA repair protein LLY41_07955 PF00912 Transglycosylase LLY41_07955 PF00905 Penicillin binding protein transpeptidase domain LLY41_07960 PF00912 Transglycosylase LLY41_07960 PF00905 Penicillin binding protein transpeptidase domain LLY41_07980 PF08807 Bacterial domain of unknown function (DUF1798) LLY41_07990 PF14179 YppG-like protein LLY41_08000 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_08000 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_08005 PF00011 Hsp20/alpha crystallin family LLY41_08020 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_08025 PF00271 Helicase conserved C-terminal domain LLY41_08025 PF00270 DEAD/DEAH box helicase LLY41_08025 PF09369 Domain of unknown function (DUF1998) LLY41_08030 PF13482 RNase_H superfamily LLY41_08045 PF06908 YspA SLOG family LLY41_08050 PF05103 DivIVA protein LLY41_08060 PF02926 THUMP domain LLY41_08060 PF01170 Putative RNA methylase family UPF0020 LLY41_08070 PF13307 Helicase C-terminal domain LLY41_08075 PF01883 Iron-sulfur cluster assembly protein LLY41_08105 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LLY41_08115 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLY41_08120 PF09125 Cytochrome C oxidase subunit II, transmembrane LLY41_08120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LLY41_08130 PF00156 Phosphoribosyl transferase domain LLY41_08135 PF00860 Permease family LLY41_08145 PF02797 Chalcone and stilbene synthases, C-terminal domain LLY41_08145 PF00195 Chalcone and stilbene synthases, N-terminal domain LLY41_08150 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family LLY41_08155 PF00350 Dynamin family LLY41_08170 PF00581 Rhodanese-like domain LLY41_08180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LLY41_08180 PF01367 5'-3' exonuclease, C-terminal SAM fold LLY41_08205 PF13456 Reverse transcriptase-like LLY41_08210 PF02592 Putative vitamin uptake transporter LLY41_08215 PF13456 Reverse transcriptase-like LLY41_08225 PF00313 'Cold-shock' DNA-binding domain LLY41_08245 PF02742 Iron dependent repressor, metal binding and dimerisation domain LLY41_08245 PF01325 Iron dependent repressor, N-terminal DNA binding domain LLY41_08265 PF04204 Homoserine O-succinyltransferase LLY41_08270 PF01268 Formate--tetrahydrofolate ligase LLY41_08290 PF02645 Uncharacterised protein, DegV family COG1307 LLY41_08295 PF01966 HD domain LLY41_08300 PF00005 ABC transporter LLY41_08300 PF16326 ABC transporter C-terminal domain LLY41_08300 PF12848 ABC transporter LLY41_08305 PF08712 Scaffold protein Nfu/NifU N terminal LLY41_08305 PF13769 Virulence factor LLY41_08310 PF00920 Dehydratase family LLY41_08315 PF06491 Disulphide isomerase LLY41_08320 PF04445 Putative SAM-dependent methyltransferase LLY41_08325 PF00155 Aminotransferase class I and II LLY41_08330 PF14005 YpjP-like protein LLY41_08335 PF02342 TerD domain LLY41_08340 PF03741 Integral membrane protein TerC family LLY41_08370 PF14266 Putative component of 'biosynthetic module' LLY41_08375 PF05816 Toxic anion resistance protein (TelA) LLY41_08380 PF02342 TerD domain LLY41_08385 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain LLY41_08390 PF00303 Thymidylate synthase LLY41_08395 PF00186 Dihydrofolate reductase LLY41_08400 PF01553 Acyltransferase LLY41_08410 PF00291 Pyridoxal-phosphate dependent enzyme LLY41_08410 PF00585 C-terminal regulatory domain of Threonine dehydratase LLY41_08415 PF02416 mttA/Hcf106 family LLY41_08420 PF00902 Sec-independent protein translocase protein (TatC) LLY41_08430 PF02645 Uncharacterised protein, DegV family COG1307 LLY41_08435 PF01156 Inosine-uridine preferring nucleoside hydrolase LLY41_08440 PF02630 SCO1/SenC LLY41_08445 PF13472 GDSL-like Lipase/Acylhydrolase family LLY41_08460 PF03193 RsgA GTPase LLY41_08465 PF01625 Peptide methionine sulfoxide reductase LLY41_08470 PF01641 SelR domain LLY41_08475 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LLY41_08495 PF00202 Aminotransferase class-III LLY41_08500 PF01144 Coenzyme A transferase LLY41_08505 PF01144 Coenzyme A transferase LLY41_08510 PF01546 Peptidase family M20/M25/M40 LLY41_08510 PF07687 Peptidase dimerisation domain LLY41_08515 PF00202 Aminotransferase class-III LLY41_08525 PF00583 Acetyltransferase (GNAT) family LLY41_08530 PF00158 Sigma-54 interaction domain LLY41_08530 PF13426 PAS domain LLY41_08530 PF02954 Bacterial regulatory protein, Fis family LLY41_08535 PF12544 Lysine-2,3-aminomutase LLY41_08540 PF14122 YokU-like protein, putative antitoxin LLY41_08545 PF06855 YozE SAM-like fold LLY41_08560 PF14162 YozD-like protein LLY41_08570 PF03009 Glycerophosphoryl diester phosphodiesterase family LLY41_08575 PF14191 YodL-like LLY41_08585 PF01048 Phosphorylase superfamily LLY41_08590 PF02557 D-alanyl-D-alanine carboxypeptidase LLY41_08605 PF01471 Putative peptidoglycan binding domain LLY41_08605 PF03572 Peptidase family S41 LLY41_08605 PF17820 PDZ domain LLY41_08610 PF03816 Cell envelope-related transcriptional attenuator domain LLY41_08615 PF08241 Methyltransferase domain LLY41_08625 PF07683 Cobalamin synthesis protein cobW C-terminal domain LLY41_08625 PF02492 CobW/HypB/UreG, nucleotide-binding domain LLY41_08650 PF00072 Response regulator receiver domain LLY41_08650 PF00486 Transcriptional regulatory protein, C terminal LLY41_08655 PF00989 PAS fold LLY41_08655 PF00512 His Kinase A (phospho-acceptor) domain LLY41_08655 PF18698 Histidine kinase sensor domain LLY41_08655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_08655 PF00672 HAMP domain LLY41_08660 PF13115 YtkA-like LLY41_08665 PF00188 Cysteine-rich secretory protein family LLY41_08670 PF00583 Acetyltransferase (GNAT) family LLY41_08675 PF00011 Hsp20/alpha crystallin family LLY41_08690 PF01554 MatE LLY41_08705 PF01979 Amidohydrolase family LLY41_08710 PF09335 SNARE associated Golgi protein LLY41_08715 PF02673 Bacitracin resistance protein BacA LLY41_08730 PF13396 Phospholipase_D-nuclease N-terminal LLY41_08735 PF00005 ABC transporter LLY41_08735 PF13732 Domain of unknown function (DUF4162) LLY41_08740 PF12679 ABC-2 family transporter protein LLY41_08745 PF01734 Patatin-like phospholipase LLY41_08755 PF00578 AhpC/TSA family LLY41_08760 PF12787 EcsC protein family LLY41_08765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LLY41_08765 PF01872 RibD C-terminal domain LLY41_08770 PF00677 Lumazine binding domain LLY41_08775 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LLY41_08775 PF00925 GTP cyclohydrolase II LLY41_08780 PF00885 6,7-dimethyl-8-ribityllumazine synthase LLY41_08785 PF00860 Permease family LLY41_08790 PF00563 EAL domain LLY41_08790 PF08668 HDOD domain LLY41_08795 PF01678 Diaminopimelate epimerase LLY41_08805 PF02735 Ku70/Ku80 beta-barrel domain LLY41_08810 PF01569 PAP2 superfamily LLY41_08815 PF04309 Glycerol-3-phosphate responsive antiterminator LLY41_08820 PF00230 Major intrinsic protein LLY41_08825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LLY41_08825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LLY41_08830 PF01266 FAD dependent oxidoreductase LLY41_08830 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LLY41_08845 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LLY41_08845 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LLY41_08850 PF00313 'Cold-shock' DNA-binding domain LLY41_08855 PF00271 Helicase conserved C-terminal domain LLY41_08855 PF00270 DEAD/DEAH box helicase LLY41_08860 PF00313 'Cold-shock' DNA-binding domain LLY41_08870 PF00814 Glycoprotease family LLY41_08870 PF00583 Acetyltransferase (GNAT) family LLY41_08910 PF01810 LysE type translocator LLY41_08915 PF08141 Small acid-soluble spore protein H family LLY41_08925 PF02583 Metal-sensitive transcriptional repressor LLY41_08930 PF00403 Heavy-metal-associated domain LLY41_08935 PF00403 Heavy-metal-associated domain LLY41_08940 PF02867 Ribonucleotide reductase, barrel domain LLY41_08940 PF03477 ATP cone domain LLY41_08940 PF00317 Ribonucleotide reductase, all-alpha domain LLY41_08945 PF00268 Ribonucleotide reductase, small chain LLY41_08950 PF04055 Radical SAM superfamily LLY41_08950 PF06968 Biotin and Thiamin Synthesis associated domain LLY41_08955 PF02632 BioY family LLY41_08970 PF00294 pfkB family carbohydrate kinase LLY41_08975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LLY41_08975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LLY41_09000 PF00561 alpha/beta hydrolase fold LLY41_09005 PF07690 Major Facilitator Superfamily LLY41_09010 PF03475 3-alpha domain LLY41_09010 PF03473 MOSC domain LLY41_09015 PF04715 Anthranilate synthase component I, N terminal region LLY41_09015 PF00425 chorismate binding enzyme LLY41_09020 PF00117 Glutamine amidotransferase class-I LLY41_09020 PF02885 Glycosyl transferase family, helical bundle domain LLY41_09020 PF00591 Glycosyl transferase family, a/b domain LLY41_09025 PF02885 Glycosyl transferase family, helical bundle domain LLY41_09025 PF00591 Glycosyl transferase family, a/b domain LLY41_09030 PF00218 Indole-3-glycerol phosphate synthase LLY41_09040 PF00291 Pyridoxal-phosphate dependent enzyme LLY41_09045 PF00290 Tryptophan synthase alpha chain LLY41_09050 PF00005 ABC transporter LLY41_09055 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_09065 PF04011 LemA family LLY41_09075 PF13649 Methyltransferase domain LLY41_09085 PF02586 SOS response associated peptidase (SRAP) LLY41_09095 PF05163 DinB family LLY41_09115 PF11553 Protein of unknown function (DUF3231) LLY41_09135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLY41_09135 PF00384 Molybdopterin oxidoreductase LLY41_09135 PF01568 Molydopterin dinucleotide binding domain LLY41_09165 PF07690 Major Facilitator Superfamily LLY41_09175 PF00196 Bacterial regulatory proteins, luxR family LLY41_09175 PF00072 Response regulator receiver domain LLY41_09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_09185 PF07730 Histidine kinase LLY41_09195 PF03551 Transcriptional regulator PadR-like family LLY41_09200 PF06738 Putative threonine/serine exporter LLY41_09205 PF12821 Threonine/Serine exporter, ThrE LLY41_09205 PF06738 Putative threonine/serine exporter LLY41_09210 PF00005 ABC transporter LLY41_09210 PF00664 ABC transporter transmembrane region LLY41_09215 PF00144 Beta-lactamase LLY41_09220 PF01915 Glycosyl hydrolase family 3 C-terminal domain LLY41_09220 PF00933 Glycosyl hydrolase family 3 N terminal domain LLY41_09240 PF00795 Carbon-nitrogen hydrolase LLY41_09240 PF00583 Acetyltransferase (GNAT) family LLY41_09260 PF00440 Bacterial regulatory proteins, tetR family LLY41_09260 PF13977 BetI-type transcriptional repressor, C-terminal LLY41_09265 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LLY41_09265 PF01568 Molydopterin dinucleotide binding domain LLY41_09265 PF00384 Molybdopterin oxidoreductase LLY41_09265 PF12838 4Fe-4S dicluster domain LLY41_09265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLY41_09270 PF07849 Protein of unknown function (DUF1641) LLY41_09275 PF01966 HD domain LLY41_09275 PF00072 Response regulator receiver domain LLY41_09285 PF02634 FdhD/NarQ family LLY41_09290 PF10057 Uncharacterized conserved protein (DUF2294) LLY41_09295 PF00877 NlpC/P60 family LLY41_09300 PF00392 Bacterial regulatory proteins, gntR family LLY41_09300 PF07729 FCD domain LLY41_09305 PF02913 FAD linked oxidases, C-terminal domain LLY41_09305 PF01565 FAD binding domain LLY41_09310 PF13183 4Fe-4S dicluster domain LLY41_09310 PF02754 Cysteine-rich domain LLY41_09315 PF01565 FAD binding domain LLY41_09315 PF02913 FAD linked oxidases, C-terminal domain LLY41_09325 PF01557 Fumarylacetoacetate (FAA) hydrolase family LLY41_09330 PF01614 Bacterial transcriptional regulator LLY41_09330 PF09339 IclR helix-turn-helix domain LLY41_09335 PF02652 L-lactate permease LLY41_09340 PF00392 Bacterial regulatory proteins, gntR family LLY41_09345 PF00005 ABC transporter LLY41_09355 PF04542 Sigma-70 region 2 LLY41_09355 PF08281 Sigma-70, region 4 LLY41_09360 PF00106 short chain dehydrogenase LLY41_09365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLY41_09365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLY41_09365 PF02770 Acyl-CoA dehydrogenase, middle domain LLY41_09370 PF02803 Thiolase, C-terminal domain LLY41_09370 PF00108 Thiolase, N-terminal domain LLY41_09375 PF13193 AMP-binding enzyme C-terminal domain LLY41_09375 PF00501 AMP-binding enzyme LLY41_09380 PF02515 CoA-transferase family III LLY41_09390 PF01066 CDP-alcohol phosphatidyltransferase LLY41_09395 PF01541 GIY-YIG catalytic domain LLY41_09400 PF01494 FAD binding domain LLY41_09405 PF08240 Alcohol dehydrogenase GroES-like domain LLY41_09405 PF00107 Zinc-binding dehydrogenase LLY41_09410 PF00005 ABC transporter LLY41_09410 PF12399 Branched-chain amino acid ATP-binding cassette transporter LLY41_09415 PF00501 AMP-binding enzyme LLY41_09420 PF02653 Branched-chain amino acid transport system / permease component LLY41_09430 PF13458 Periplasmic binding protein LLY41_09435 PF00005 ABC transporter LLY41_09445 PF08241 Methyltransferase domain LLY41_09455 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LLY41_09475 PF00072 Response regulator receiver domain LLY41_09475 PF00486 Transcriptional regulatory protein, C terminal LLY41_09480 PF16736 Single Cache-like LLY41_09480 PF00989 PAS fold LLY41_09480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_09480 PF00512 His Kinase A (phospho-acceptor) domain LLY41_09490 PF01566 Natural resistance-associated macrophage protein LLY41_09490 PF03358 NADPH-dependent FMN reductase LLY41_09505 PF00583 Acetyltransferase (GNAT) family LLY41_09510 PF00881 Nitroreductase family LLY41_09540 PF13342 C-terminal repeat of topoisomerase LLY41_09540 PF01751 Toprim domain LLY41_09540 PF01131 DNA topoisomerase LLY41_09540 PF01396 Topoisomerase DNA binding C4 zinc finger LLY41_09560 PF18277 AbrB C-terminal domain LLY41_09560 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LLY41_09585 PF01544 CorA-like Mg2+ transporter protein LLY41_09590 PF00583 Acetyltransferase (GNAT) family LLY41_09595 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_09600 PF00465 Iron-containing alcohol dehydrogenase LLY41_09605 PF01047 MarR family LLY41_09610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLY41_09615 PF01738 Dienelactone hydrolase family LLY41_09620 PF03358 NADPH-dependent FMN reductase LLY41_09625 PF02678 Pirin LLY41_09625 PF05726 Pirin C-terminal cupin domain LLY41_09630 PF00535 Glycosyl transferase family 2 LLY41_09640 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LLY41_09640 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LLY41_09660 PF00665 Integrase core domain LLY41_09660 PF13333 Integrase core domain LLY41_09670 PF07454 Stage II sporulation protein P (SpoIIP) LLY41_09705 PF00665 Integrase core domain LLY41_09705 PF13333 Integrase core domain LLY41_09710 PF01568 Molydopterin dinucleotide binding domain LLY41_09710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLY41_09710 PF00384 Molybdopterin oxidoreductase LLY41_09715 PF00072 Response regulator receiver domain LLY41_09715 PF00196 Bacterial regulatory proteins, luxR family LLY41_09725 PF00501 AMP-binding enzyme LLY41_09725 PF07993 Male sterility protein LLY41_09725 PF00550 Phosphopantetheine attachment site LLY41_09730 PF06081 Aromatic acid exporter family member 1 LLY41_09735 PF04073 Aminoacyl-tRNA editing domain LLY41_09750 PF03466 LysR substrate binding domain LLY41_09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLY41_09755 PF00175 Oxidoreductase NAD-binding domain LLY41_09755 PF00258 Flavodoxin LLY41_09755 PF00667 FAD binding domain LLY41_09760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LLY41_09760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LLY41_09795 PF00583 Acetyltransferase (GNAT) family LLY41_09805 PF00293 NUDIX domain LLY41_09830 PF12368 Rhodanase C-terminal LLY41_09830 PF17773 UPF0176 acylphosphatase like domain LLY41_09830 PF00581 Rhodanese-like domain LLY41_09835 PF01810 LysE type translocator LLY41_09875 PF00005 ABC transporter LLY41_09890 PF00293 NUDIX domain LLY41_09895 PF00486 Transcriptional regulatory protein, C terminal LLY41_09895 PF00072 Response regulator receiver domain LLY41_09900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_09900 PF00512 His Kinase A (phospho-acceptor) domain LLY41_09900 PF00672 HAMP domain LLY41_09905 PF04542 Sigma-70 region 2 LLY41_09905 PF08281 Sigma-70, region 4 LLY41_09915 PF13247 4Fe-4S dicluster domain LLY41_09915 PF14711 Respiratory nitrate reductase beta C-terminal LLY41_09920 PF02613 Nitrate reductase delta subunit LLY41_09925 PF02665 Nitrate reductase gamma subunit LLY41_09935 PF07690 Major Facilitator Superfamily LLY41_09955 PF13427 Domain of unknown function (DUF4111) LLY41_09955 PF01909 Nucleotidyltransferase domain LLY41_09960 PF10997 Alternate to MurJ LLY41_09965 PF09335 SNARE associated Golgi protein LLY41_09970 PF01595 Cyclin M transmembrane N-terminal domain LLY41_09970 PF03471 Transporter associated domain LLY41_09970 PF00571 CBS domain LLY41_09975 PF13411 MerR HTH family regulatory protein LLY41_09980 PF00375 Sodium:dicarboxylate symporter family LLY41_09995 PF00144 Beta-lactamase LLY41_09995 PF11954 Domain of unknown function (DUF3471) LLY41_10000 PF04231 Endonuclease I LLY41_10010 PF02080 TrkA-C domain LLY41_10010 PF02254 TrkA-N domain LLY41_10015 PF02386 Cation transport protein LLY41_10025 PF01022 Bacterial regulatory protein, arsR family LLY41_10040 PF08863 YolD-like protein LLY41_10055 PF13171 Protein of unknown function (DUF4004) LLY41_10065 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_10070 PF05504 Spore germination B3/ GerAC like, C-terminal LLY41_10075 PF03845 Spore germination protein LLY41_10085 PF01842 ACT domain LLY41_10085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLY41_10085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLY41_10095 PF00392 Bacterial regulatory proteins, gntR family LLY41_10095 PF07729 FCD domain LLY41_10100 PF05525 Branched-chain amino acid transport protein LLY41_10105 PF01048 Phosphorylase superfamily LLY41_10110 PF01638 HxlR-like helix-turn-helix LLY41_10115 PF07681 DoxX LLY41_10120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLY41_10135 PF00467 KOW motif LLY41_10135 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LLY41_10145 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LLY41_10150 PF07690 Major Facilitator Superfamily LLY41_10155 PF13302 Acetyltransferase (GNAT) domain LLY41_10175 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LLY41_10175 PF00356 Bacterial regulatory proteins, lacI family LLY41_10200 PF00092 von Willebrand factor type A domain LLY41_10205 PF13302 Acetyltransferase (GNAT) domain LLY41_10230 PF01522 Polysaccharide deacetylase LLY41_10235 PF01593 Flavin containing amine oxidoreductase LLY41_10245 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LLY41_10245 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LLY41_10260 PF00892 EamA-like transporter family LLY41_10265 PF00155 Aminotransferase class I and II LLY41_10265 PF00392 Bacterial regulatory proteins, gntR family LLY41_10270 PF07690 Major Facilitator Superfamily LLY41_10280 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_10295 PF01022 Bacterial regulatory protein, arsR family LLY41_10300 PF02040 Arsenical pump membrane protein LLY41_10305 PF01451 Low molecular weight phosphotyrosine protein phosphatase LLY41_10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_10320 PF00672 HAMP domain LLY41_10320 PF00512 His Kinase A (phospho-acceptor) domain LLY41_10325 PF00486 Transcriptional regulatory protein, C terminal LLY41_10325 PF00072 Response regulator receiver domain LLY41_10330 PF12823 Domain of unknown function (DUF3817) LLY41_10330 PF03176 MMPL family LLY41_10335 PF04239 Protein of unknown function (DUF421) LLY41_10340 PF01740 STAS domain LLY41_10360 PF03932 CutC family LLY41_10365 PF00488 MutS domain V LLY41_10365 PF01713 Smr domain LLY41_10370 PF03553 Na+/H+ antiporter family LLY41_10395 PF13243 Squalene-hopene cyclase C-terminal domain LLY41_10395 PF13249 Squalene-hopene cyclase N-terminal domain LLY41_10410 PF13302 Acetyltransferase (GNAT) domain LLY41_10425 PF00375 Sodium:dicarboxylate symporter family LLY41_10440 PF01541 GIY-YIG catalytic domain LLY41_10440 PF02151 UvrB/uvrC motif LLY41_10440 PF08459 UvrC Helix-hairpin-helix N-terminal LLY41_10445 PF01380 SIS domain LLY41_10445 PF01418 Helix-turn-helix domain, rpiR family LLY41_10455 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_10460 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_10465 PF00144 Beta-lactamase LLY41_10470 PF01869 BadF/BadG/BcrA/BcrD ATPase family LLY41_10485 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LLY41_10505 PF02954 Bacterial regulatory protein, Fis family LLY41_10505 PF13188 PAS domain LLY41_10505 PF00158 Sigma-54 interaction domain LLY41_10530 PF03812 2-keto-3-deoxygluconate permease LLY41_10535 PF00378 Enoyl-CoA hydratase/isomerase LLY41_10545 PF02515 CoA-transferase family III LLY41_10550 PF00132 Bacterial transferase hexapeptide (six repeats) LLY41_10560 PF00171 Aldehyde dehydrogenase family LLY41_10570 PF02754 Cysteine-rich domain LLY41_10570 PF13183 4Fe-4S dicluster domain LLY41_10580 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LLY41_10585 PF07728 AAA domain (dynein-related subfamily) LLY41_10585 PF12102 Domain of unknown function (DUF3578) LLY41_10595 PF00271 Helicase conserved C-terminal domain LLY41_10595 PF04851 Type III restriction enzyme, res subunit LLY41_10600 PF00293 NUDIX domain LLY41_10605 PF08378 Nuclease-related domain LLY41_10625 PF09339 IclR helix-turn-helix domain LLY41_10625 PF01614 Bacterial transcriptional regulator LLY41_10630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LLY41_10630 PF00205 Thiamine pyrophosphate enzyme, central domain LLY41_10630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LLY41_10635 PF00171 Aldehyde dehydrogenase family LLY41_10640 PF00920 Dehydratase family LLY41_10645 PF13407 Periplasmic binding protein domain LLY41_10650 PF00005 ABC transporter LLY41_10655 PF02653 Branched-chain amino acid transport system / permease component LLY41_10660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LLY41_10660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LLY41_10665 PF01842 ACT domain LLY41_10665 PF00551 Formyl transferase LLY41_10700 PF02627 Carboxymuconolactone decarboxylase family LLY41_10710 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_10725 PF03845 Spore germination protein LLY41_10735 PF05922 Peptidase inhibitor I9 LLY41_10735 PF00082 Subtilase family LLY41_10745 PF11188 Protein of unknown function (DUF2975) LLY41_10760 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_10765 PF03845 Spore germination protein LLY41_10780 PF02469 Fasciclin domain LLY41_10815 PF01040 UbiA prenyltransferase family LLY41_10830 PF00144 Beta-lactamase LLY41_10835 PF00355 Rieske [2Fe-2S] domain LLY41_10840 PF01381 Helix-turn-helix LLY41_10855 PF13411 MerR HTH family regulatory protein LLY41_10855 PF07739 TipAS antibiotic-recognition domain LLY41_10860 PF03845 Spore germination protein LLY41_10905 PF07687 Peptidase dimerisation domain LLY41_10905 PF01546 Peptidase family M20/M25/M40 LLY41_10910 PF11188 Protein of unknown function (DUF2975) LLY41_10915 PF13443 Cro/C1-type HTH DNA-binding domain LLY41_10920 PF05675 Protein of unknown function (DUF817) LLY41_10955 PF07687 Peptidase dimerisation domain LLY41_10955 PF01546 Peptidase family M20/M25/M40 LLY41_10965 PF13378 Enolase C-terminal domain-like LLY41_10965 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLY41_10975 PF00155 Aminotransferase class I and II LLY41_10975 PF00392 Bacterial regulatory proteins, gntR family LLY41_10980 PF00905 Penicillin binding protein transpeptidase domain LLY41_11010 PF00005 ABC transporter LLY41_11015 PF08241 Methyltransferase domain LLY41_11030 PF00892 EamA-like transporter family LLY41_11055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLY41_11060 PF00266 Aminotransferase class-V LLY41_11080 PF07883 Cupin domain LLY41_11095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LLY41_11095 PF02378 Phosphotransferase system, EIIC LLY41_11095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LLY41_11100 PF08279 HTH domain LLY41_11100 PF05043 Mga helix-turn-helix domain LLY41_11100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LLY41_11100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LLY41_11100 PF00874 PRD domain LLY41_11105 PF08125 Mannitol dehydrogenase C-terminal domain LLY41_11105 PF01232 Mannitol dehydrogenase Rossmann domain LLY41_11145 PF01554 MatE LLY41_11155 PF02585 GlcNAc-PI de-N-acetylase LLY41_11160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLY41_11165 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_11170 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_11170 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_11175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_11175 PF00005 ABC transporter LLY41_11180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_11180 PF00005 ABC transporter LLY41_11195 PF00403 Heavy-metal-associated domain LLY41_11200 PF00403 Heavy-metal-associated domain LLY41_11210 PF17755 UvrA DNA-binding domain LLY41_11210 PF00005 ABC transporter LLY41_11210 PF17760 UvrA interaction domain LLY41_11220 PF00480 ROK family LLY41_11225 PF01261 Xylose isomerase-like TIM barrel LLY41_11230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LLY41_11230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LLY41_11235 PF01263 Aldose 1-epimerase LLY41_11240 PF00083 Sugar (and other) transporter LLY41_11250 PF01297 Zinc-uptake complex component A periplasmic LLY41_11255 PF00950 ABC 3 transport family LLY41_11260 PF00005 ABC transporter LLY41_11265 PF02660 Glycerol-3-phosphate acyltransferase LLY41_11275 PF00884 Sulfatase LLY41_11295 PF12833 Helix-turn-helix domain LLY41_11295 PF02311 AraC-like ligand binding domain LLY41_11300 PF00892 EamA-like transporter family LLY41_11305 PF00296 Luciferase-like monooxygenase LLY41_11315 PF05257 CHAP domain LLY41_11315 PF01476 LysM domain LLY41_11330 PF00583 Acetyltransferase (GNAT) family LLY41_11345 PF00108 Thiolase, N-terminal domain LLY41_11345 PF02803 Thiolase, C-terminal domain LLY41_11350 PF13193 AMP-binding enzyme C-terminal domain LLY41_11350 PF00501 AMP-binding enzyme LLY41_11355 PF02632 BioY family LLY41_11370 PF12146 Serine aminopeptidase, S33 LLY41_11375 PF01758 Sodium Bile acid symporter family LLY41_11380 PF00575 S1 RNA binding domain LLY41_11390 PF01472 PUA domain LLY41_11390 PF00696 Amino acid kinase family LLY41_11395 PF00171 Aldehyde dehydrogenase family LLY41_11400 PF13188 PAS domain LLY41_11400 PF13426 PAS domain LLY41_11400 PF00989 PAS fold LLY41_11400 PF00512 His Kinase A (phospho-acceptor) domain LLY41_11400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_11435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLY41_11435 PF00384 Molybdopterin oxidoreductase LLY41_11435 PF01568 Molydopterin dinucleotide binding domain LLY41_11440 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LLY41_11440 PF01476 LysM domain LLY41_11450 PF13739 Deacetylase PdaC LLY41_11450 PF01522 Polysaccharide deacetylase LLY41_11450 PF11738 Protein of unknown function (DUF3298) LLY41_11455 PF10942 Protein of unknown function (DUF2619) LLY41_11460 PF03848 Tellurite resistance protein TehB LLY41_11460 PF09313 Domain of unknown function (DUF1971) LLY41_11465 PF07702 UTRA domain LLY41_11465 PF00392 Bacterial regulatory proteins, gntR family LLY41_11470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LLY41_11475 PF02378 Phosphotransferase system, EIIC LLY41_11480 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LLY41_11485 PF11975 Family 4 glycosyl hydrolase C-terminal domain LLY41_11485 PF02056 Family 4 glycosyl hydrolase LLY41_11490 PF04794 YdjC-like protein LLY41_11495 PF00367 phosphotransferase system, EIIB LLY41_11495 PF02378 Phosphotransferase system, EIIC LLY41_11500 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LLY41_11505 PF13580 SIS domain LLY41_11520 PF00005 ABC transporter LLY41_11525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_11530 PF00486 Transcriptional regulatory protein, C terminal LLY41_11530 PF00072 Response regulator receiver domain LLY41_11545 PF00082 Subtilase family LLY41_11545 PF02225 PA domain LLY41_11545 PF00746 LPXTG cell wall anchor motif LLY41_11545 PF06280 Fn3-like domain LLY41_11565 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_11570 PF03845 Spore germination protein LLY41_11575 PF07690 Major Facilitator Superfamily LLY41_11580 PF01047 MarR family LLY41_11585 PF04607 Region found in RelA / SpoT proteins LLY41_11595 PF16925 Tetracyclin repressor-like, C-terminal domain LLY41_11595 PF00440 Bacterial regulatory proteins, tetR family LLY41_11600 PF07690 Major Facilitator Superfamily LLY41_11615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLY41_11630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLY41_11630 PF02770 Acyl-CoA dehydrogenase, middle domain LLY41_11630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLY41_11640 PF00501 AMP-binding enzyme LLY41_11640 PF13193 AMP-binding enzyme C-terminal domain LLY41_11645 PF00440 Bacterial regulatory proteins, tetR family LLY41_11650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLY41_11650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLY41_11670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLY41_11670 PF02770 Acyl-CoA dehydrogenase, middle domain LLY41_11670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLY41_11675 PF08240 Alcohol dehydrogenase GroES-like domain LLY41_11675 PF00107 Zinc-binding dehydrogenase LLY41_11680 PF01209 ubiE/COQ5 methyltransferase family LLY41_11690 PF07690 Major Facilitator Superfamily LLY41_11695 PF03576 Peptidase family S58 LLY41_11705 PF00266 Aminotransferase class-V LLY41_11715 PF02954 Bacterial regulatory protein, Fis family LLY41_11715 PF00158 Sigma-54 interaction domain LLY41_11715 PF00989 PAS fold LLY41_11720 PF02913 FAD linked oxidases, C-terminal domain LLY41_11720 PF01565 FAD binding domain LLY41_11725 PF02754 Cysteine-rich domain LLY41_11725 PF13183 4Fe-4S dicluster domain LLY41_11735 PF00392 Bacterial regulatory proteins, gntR family LLY41_11735 PF07729 FCD domain LLY41_11740 PF02515 CoA-transferase family III LLY41_11745 PF00378 Enoyl-CoA hydratase/isomerase LLY41_11770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LLY41_11770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LLY41_11780 PF01507 Phosphoadenosine phosphosulfate reductase family LLY41_11785 PF01384 Phosphate transporter family LLY41_11790 PF14306 PUA-like domain LLY41_11790 PF01747 ATP-sulfurylase LLY41_11800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LLY41_11805 PF01903 CbiX LLY41_11810 PF14824 Sirohaem biosynthesis protein central LLY41_11815 PF13556 PucR C-terminal helix-turn-helix domain LLY41_11815 PF05651 Putative sugar diacid recognition LLY41_11815 PF17853 GGDEF-like domain LLY41_11820 PF02447 GntP family permease LLY41_11825 PF02595 Glycerate kinase family LLY41_11840 PF07690 Major Facilitator Superfamily LLY41_11845 PF00672 HAMP domain LLY41_11845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_11845 PF02743 Cache domain LLY41_11855 PF07687 Peptidase dimerisation domain LLY41_11855 PF01546 Peptidase family M20/M25/M40 LLY41_11860 PF03806 AbgT putative transporter family LLY41_11865 PF00171 Aldehyde dehydrogenase family LLY41_11870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LLY41_11870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LLY41_11870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LLY41_11870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LLY41_11875 PF02811 PHP domain LLY41_11880 PF14306 PUA-like domain LLY41_11880 PF01747 ATP-sulfurylase LLY41_11890 PF01050 Mannose-6-phosphate isomerase LLY41_11890 PF00483 Nucleotidyl transferase LLY41_11910 PF03600 Citrate transporter LLY41_11910 PF02080 TrkA-C domain LLY41_11915 PF00483 Nucleotidyl transferase LLY41_11920 PF16363 GDP-mannose 4,6 dehydratase LLY41_11925 PF04321 RmlD substrate binding domain LLY41_11930 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LLY41_11940 PF16363 GDP-mannose 4,6 dehydratase LLY41_11945 PF16363 GDP-mannose 4,6 dehydratase LLY41_11950 PF00535 Glycosyl transferase family 2 LLY41_11955 PF12996 DUF based on E. rectale Gene description (DUF3880) LLY41_11975 PF14171 Toxin SpoIISA, type II toxin-antitoxin system LLY41_12020 PF01238 Phosphomannose isomerase type I LLY41_12025 PF05036 Sporulation related domain LLY41_12025 PF01520 N-acetylmuramoyl-L-alanine amidase LLY41_12030 PF03006 Haemolysin-III related LLY41_12040 PF02673 Bacitracin resistance protein BacA LLY41_12045 PF07732 Multicopper oxidase LLY41_12065 PF00005 ABC transporter LLY41_12075 PF03471 Transporter associated domain LLY41_12075 PF00571 CBS domain LLY41_12075 PF01595 Cyclin M transmembrane N-terminal domain LLY41_12085 PF02525 Flavodoxin-like fold LLY41_12095 PF07486 Cell Wall Hydrolase LLY41_12105 PF02675 S-adenosylmethionine decarboxylase LLY41_12120 PF13529 Peptidase_C39 like family LLY41_12135 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_12140 PF05504 Spore germination B3/ GerAC like, C-terminal LLY41_12145 PF03845 Spore germination protein LLY41_12160 PF02566 OsmC-like protein LLY41_12165 PF02110 Hydroxyethylthiazole kinase family LLY41_12170 PF08543 Phosphomethylpyrimidine kinase LLY41_12175 PF02581 Thiamine monophosphate synthase LLY41_12180 PF03372 Endonuclease/Exonuclease/phosphatase family LLY41_12190 PF00893 Small Multidrug Resistance protein LLY41_12195 PF00893 Small Multidrug Resistance protein LLY41_12210 PF01230 HIT domain LLY41_12215 PF01594 AI-2E family transporter LLY41_12225 PF00106 short chain dehydrogenase LLY41_12230 PF02872 5'-nucleotidase, C-terminal domain LLY41_12230 PF00149 Calcineurin-like phosphoesterase LLY41_12235 PF07286 Protein of unknown function (DUF1445) LLY41_12240 PF01566 Natural resistance-associated macrophage protein LLY41_12245 PF03746 LamB/YcsF family LLY41_12250 PF02626 Carboxyltransferase domain, subdomain A and B LLY41_12255 PF02682 Carboxyltransferase domain, subdomain C and D LLY41_12265 PF06508 Queuosine biosynthesis protein QueC LLY41_12270 PF01242 6-pyruvoyl tetrahydropterin synthase LLY41_12275 PF04055 Radical SAM superfamily LLY41_12280 PF00005 ABC transporter LLY41_12280 PF08402 TOBE domain LLY41_12285 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_12290 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_12295 PF13416 Bacterial extracellular solute-binding protein LLY41_12300 PF04748 Divergent polysaccharide deacetylase LLY41_12310 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_12310 PF17862 AAA+ lid domain LLY41_12310 PF06480 FtsH Extracellular LLY41_12310 PF01434 Peptidase family M41 LLY41_12315 PF09515 Thiamine transporter protein (Thia_YuaJ) LLY41_12330 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LLY41_12335 PF00510 Cytochrome c oxidase subunit III LLY41_12340 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLY41_12345 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LLY41_12350 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_12355 PF03845 Spore germination protein LLY41_12365 PF01212 Beta-eliminating lyase LLY41_12375 PF00188 Cysteine-rich secretory protein family LLY41_12410 PF00248 Aldo/keto reductase family LLY41_12445 PF13419 Haloacid dehalogenase-like hydrolase LLY41_12455 PF02574 Homocysteine S-methyltransferase LLY41_12455 PF02219 Methylenetetrahydrofolate reductase LLY41_12460 PF01053 Cys/Met metabolism PLP-dependent enzyme LLY41_12465 PF01053 Cys/Met metabolism PLP-dependent enzyme LLY41_12475 PF02779 Transketolase, pyrimidine binding domain LLY41_12475 PF16870 2-oxoglutarate dehydrogenase C-terminal LLY41_12475 PF00676 Dehydrogenase E1 component LLY41_12475 PF16078 2-oxoglutarate dehydrogenase N-terminus LLY41_12480 PF02817 e3 binding domain LLY41_12480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLY41_12480 PF00364 Biotin-requiring enzyme LLY41_12495 PF00501 AMP-binding enzyme LLY41_12495 PF13193 AMP-binding enzyme C-terminal domain LLY41_12505 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LLY41_12525 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LLY41_12530 PF02096 60Kd inner membrane protein LLY41_12540 PF03706 Lysylphosphatidylglycerol synthase TM region LLY41_12540 PF09924 Uncharacterised conserved protein (DUF2156) LLY41_12550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LLY41_12550 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LLY41_12550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LLY41_12555 PF02540 NAD synthase LLY41_12565 PF04055 Radical SAM superfamily LLY41_12570 PF01228 Glycine radical LLY41_12570 PF02901 Pyruvate formate lyase-like LLY41_12575 PF00188 Cysteine-rich secretory protein family LLY41_12585 PF12833 Helix-turn-helix domain LLY41_12590 PF01175 Urocanase Rossmann-like domain LLY41_12590 PF17392 Urocanase C-terminal domain LLY41_12590 PF17391 Urocanase N-terminal domain LLY41_12595 PF01979 Amidohydrolase family LLY41_12600 PF00491 Arginase family LLY41_12605 PF07670 Nucleoside recognition LLY41_12615 PF00768 D-alanyl-D-alanine carboxypeptidase LLY41_12615 PF07943 Penicillin-binding protein 5, C-terminal domain LLY41_12620 PF03698 Uncharacterised protein family (UPF0180) LLY41_12630 PF12848 ABC transporter LLY41_12630 PF00005 ABC transporter LLY41_12635 PF13452 N-terminal half of MaoC dehydratase LLY41_12645 PF01804 Penicillin amidase LLY41_12650 PF02630 SCO1/SenC LLY41_12655 PF00171 Aldehyde dehydrogenase family LLY41_12660 PF07662 Na+ dependent nucleoside transporter C-terminus LLY41_12660 PF01773 Na+ dependent nucleoside transporter N-terminus LLY41_12675 PF09844 Uncharacterized conserved protein (COG2071) LLY41_12695 PF01432 Peptidase family M3 LLY41_12695 PF08439 Oligopeptidase F LLY41_12705 PF13426 PAS domain LLY41_12705 PF00989 PAS fold LLY41_12705 PF13188 PAS domain LLY41_12705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_12705 PF00512 His Kinase A (phospho-acceptor) domain LLY41_12710 PF01476 LysM domain LLY41_12710 PF06725 3D domain LLY41_12725 PF00248 Aldo/keto reductase family LLY41_12735 PF02342 TerD domain LLY41_12740 PF02342 TerD domain LLY41_12750 PF01476 LysM domain LLY41_12750 PF00704 Glycosyl hydrolases family 18 LLY41_12765 PF00905 Penicillin binding protein transpeptidase domain LLY41_12765 PF00912 Transglycosylase LLY41_12775 PF01966 HD domain LLY41_12785 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LLY41_12790 PF03167 Uracil DNA glycosylase superfamily LLY41_12795 PF00082 Subtilase family LLY41_12805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LLY41_12810 PF10752 Protein of unknown function (DUF2533) LLY41_12815 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LLY41_12820 PF04264 YceI-like domain LLY41_12825 PF00270 DEAD/DEAH box helicase LLY41_12825 PF00271 Helicase conserved C-terminal domain LLY41_12825 PF16124 RecQ zinc-binding LLY41_12845 PF00270 DEAD/DEAH box helicase LLY41_12845 PF00271 Helicase conserved C-terminal domain LLY41_12855 PF00487 Fatty acid desaturase LLY41_12860 PF07730 Histidine kinase LLY41_12875 PF01063 Amino-transferase class IV LLY41_12885 PF01734 Patatin-like phospholipase LLY41_12905 PF08439 Oligopeptidase F LLY41_12905 PF01432 Peptidase family M3 LLY41_12925 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_12930 PF00005 ABC transporter LLY41_12945 PF00183 Hsp90 protein LLY41_12960 PF04239 Protein of unknown function (DUF421) LLY41_13005 PF01235 Sodium:alanine symporter family LLY41_13010 PF03989 DNA gyrase C-terminal domain, beta-propeller LLY41_13010 PF00521 DNA gyrase/topoisomerase IV, subunit A LLY41_13015 PF01751 Toprim domain LLY41_13015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_13015 PF00204 DNA gyrase B LLY41_13015 PF00986 DNA gyrase B subunit, carboxyl terminus LLY41_13020 PF13380 CoA binding domain LLY41_13030 PF01979 Amidohydrolase family LLY41_13035 PF07687 Peptidase dimerisation domain LLY41_13035 PF01546 Peptidase family M20/M25/M40 LLY41_13040 PF09347 Domain of unknown function (DUF1989) LLY41_13045 PF04199 Putative cyclase LLY41_13050 PF13382 Adenine deaminase C-terminal domain LLY41_13050 PF01979 Amidohydrolase family LLY41_13055 PF03319 Ethanolamine utilisation protein EutN/carboxysome LLY41_13065 PF00936 BMC domain LLY41_13080 PF00936 BMC domain LLY41_13085 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LLY41_13090 PF02441 Flavoprotein LLY41_13095 PF00857 Isochorismatase family LLY41_13100 PF01979 Amidohydrolase family LLY41_13105 PF00860 Permease family LLY41_13115 PF01799 [2Fe-2S] binding domain LLY41_13115 PF00111 2Fe-2S iron-sulfur cluster binding domain LLY41_13120 PF12804 MobA-like NTP transferase domain LLY41_13125 PF03450 CO dehydrogenase flavoprotein C-terminal domain LLY41_13125 PF00941 FAD binding domain in molybdopterin dehydrogenase LLY41_13130 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LLY41_13130 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LLY41_13145 PF00860 Permease family LLY41_13150 PF13382 Adenine deaminase C-terminal domain LLY41_13150 PF01979 Amidohydrolase family LLY41_13160 PF02503 Polyphosphate kinase middle domain LLY41_13160 PF13090 Polyphosphate kinase C-terminal domain 2 LLY41_13160 PF17941 Polyphosphate kinase C-terminal domain 1 LLY41_13160 PF13089 Polyphosphate kinase N-terminal domain LLY41_13170 PF02660 Glycerol-3-phosphate acyltransferase LLY41_13175 PF00989 PAS fold LLY41_13175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_13175 PF00512 His Kinase A (phospho-acceptor) domain LLY41_13180 PF09587 Bacterial capsule synthesis protein PGA_cap LLY41_13190 PF01521 Iron-sulphur cluster biosynthesis LLY41_13200 PF03061 Thioesterase superfamily LLY41_13205 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_13205 PF17866 AAA lid domain LLY41_13215 PF08177 Small acid-soluble spore protein N family LLY41_13220 PF13040 Fur-regulated basic protein B LLY41_13225 PF00578 AhpC/TSA family LLY41_13235 PF00330 Aconitase family (aconitate hydratase) LLY41_13235 PF00694 Aconitase C-terminal domain LLY41_13250 PF08179 Small acid-soluble spore protein P family LLY41_13255 PF12390 Selenocysteine synthase N terminal LLY41_13255 PF03841 L-seryl-tRNA selenium transferase LLY41_13270 PF00797 N-acetyltransferase LLY41_13275 PF01370 NAD dependent epimerase/dehydratase family LLY41_13280 PF00155 Aminotransferase class I and II LLY41_13290 PF00199 Catalase LLY41_13290 PF06628 Catalase-related immune-responsive LLY41_13295 PF00005 ABC transporter LLY41_13295 PF12848 ABC transporter LLY41_13300 PF02645 Uncharacterised protein, DegV family COG1307 LLY41_13310 PF01557 Fumarylacetoacetate (FAA) hydrolase family LLY41_13315 PF01613 Flavin reductase like domain LLY41_13320 PF00155 Aminotransferase class I and II LLY41_13325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLY41_13330 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_13330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLY41_13335 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLY41_13335 PF00364 Biotin-requiring enzyme LLY41_13335 PF02817 e3 binding domain LLY41_13340 PF02779 Transketolase, pyrimidine binding domain LLY41_13340 PF02780 Transketolase, C-terminal domain LLY41_13345 PF00676 Dehydrogenase E1 component LLY41_13350 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LLY41_13350 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LLY41_13360 PF00005 ABC transporter LLY41_13360 PF09383 NIL domain LLY41_13365 PF02653 Branched-chain amino acid transport system / permease component LLY41_13375 PF03060 Nitronate monooxygenase LLY41_13380 PF08223 PaaX-like protein C-terminal domain LLY41_13380 PF07848 PaaX-like protein LLY41_13385 PF00108 Thiolase, N-terminal domain LLY41_13385 PF02803 Thiolase, C-terminal domain LLY41_13390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLY41_13390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLY41_13395 PF00378 Enoyl-CoA hydratase/isomerase LLY41_13400 PF00378 Enoyl-CoA hydratase/isomerase LLY41_13425 PF05138 Phenylacetic acid catabolic protein LLY41_13430 PF14535 AMP-binding enzyme C-terminal domain LLY41_13430 PF00501 AMP-binding enzyme LLY41_13445 PF04203 Sortase domain LLY41_13455 PF01709 Transcriptional regulator LLY41_13460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LLY41_13460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LLY41_13470 PF00565 Staphylococcal nuclease homologue LLY41_13470 PF05901 Excalibur calcium-binding domain LLY41_13475 PF03313 Serine dehydratase alpha chain LLY41_13480 PF01842 ACT domain LLY41_13480 PF03315 Serine dehydratase beta chain LLY41_13495 PF16736 Single Cache-like LLY41_13495 PF00989 PAS fold LLY41_13495 PF00512 His Kinase A (phospho-acceptor) domain LLY41_13495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_13500 PF00486 Transcriptional regulatory protein, C terminal LLY41_13500 PF00072 Response regulator receiver domain LLY41_13510 PF07563 Protein of unknown function (DUF1541) LLY41_13515 PF03860 Domain of Unknown Function (DUF326) LLY41_13520 PF00884 Sulfatase LLY41_13530 PF00929 Exonuclease LLY41_13530 PF04851 Type III restriction enzyme, res subunit LLY41_13530 PF13307 Helicase C-terminal domain LLY41_13545 PF00924 Mechanosensitive ion channel LLY41_13545 PF12794 Mechanosensitive ion channel inner membrane domain 1 LLY41_13545 PF12795 Mechanosensitive ion channel porin domain LLY41_13550 PF01594 AI-2E family transporter LLY41_13555 PF05343 M42 glutamyl aminopeptidase LLY41_13595 PF01476 LysM domain LLY41_13595 PF00877 NlpC/P60 family LLY41_13610 PF03630 Fumble LLY41_13625 PF00764 Arginosuccinate synthase LLY41_13630 PF13476 AAA domain LLY41_13650 PF00313 'Cold-shock' DNA-binding domain LLY41_13670 PF12729 Four helix bundle sensory module for signal transduction LLY41_13670 PF00672 HAMP domain LLY41_13670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_13675 PF04294 VanW like protein LLY41_13685 PF07690 Major Facilitator Superfamily LLY41_13690 PF16925 Tetracyclin repressor-like, C-terminal domain LLY41_13690 PF00440 Bacterial regulatory proteins, tetR family LLY41_13695 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_13700 PF01645 Conserved region in glutamate synthase LLY41_13710 PF00128 Alpha amylase, catalytic domain LLY41_13715 PF00128 Alpha amylase, catalytic domain LLY41_13720 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_13725 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_13730 PF01547 Bacterial extracellular solute-binding protein LLY41_13735 PF00356 Bacterial regulatory proteins, lacI family LLY41_13740 PF02602 Uroporphyrinogen-III synthase HemD LLY41_13745 PF00884 Sulfatase LLY41_13750 PF01361 Tautomerase enzyme LLY41_13755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLY41_13765 PF03480 Bacterial extracellular solute-binding protein, family 7 LLY41_13770 PF00324 Amino acid permease LLY41_13780 PF07836 DmpG-like communication domain LLY41_13780 PF00682 HMGL-like LLY41_13785 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LLY41_13785 PF01118 Semialdehyde dehydrogenase, NAD binding domain LLY41_13790 PF01557 Fumarylacetoacetate (FAA) hydrolase family LLY41_13795 PF00171 Aldehyde dehydrogenase family LLY41_13800 PF01042 Endoribonuclease L-PSP LLY41_13810 PF06052 3-hydroxyanthranilic acid dioxygenase LLY41_13815 PF03358 NADPH-dependent FMN reductase LLY41_13820 PF06574 FAD synthetase LLY41_13825 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal LLY41_13825 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal LLY41_13845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LLY41_13845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LLY41_13850 PF01261 Xylose isomerase-like TIM barrel LLY41_13855 PF00092 von Willebrand factor type A domain LLY41_13870 PF07729 FCD domain LLY41_13870 PF00392 Bacterial regulatory proteins, gntR family LLY41_13875 PF02417 Chromate transporter LLY41_13880 PF02417 Chromate transporter LLY41_13885 PF03928 Haem-degrading LLY41_13890 PF00171 Aldehyde dehydrogenase family LLY41_13930 PF03447 Homoserine dehydrogenase, NAD binding domain LLY41_13930 PF01958 Domain of unknown function DUF108 LLY41_13935 PF00392 Bacterial regulatory proteins, gntR family LLY41_13935 PF07729 FCD domain LLY41_13940 PF06866 Protein of unknown function (DUF1256) LLY41_13945 PF00892 EamA-like transporter family LLY41_13955 PF00082 Subtilase family LLY41_13955 PF05922 Peptidase inhibitor I9 LLY41_13955 PF13860 FlgD Ig-like domain LLY41_13955 PF02225 PA domain LLY41_13960 PF07859 alpha/beta hydrolase fold LLY41_13970 PF03472 Autoinducer binding domain LLY41_13970 PF00196 Bacterial regulatory proteins, luxR family LLY41_13975 PF03313 Serine dehydratase alpha chain LLY41_13985 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_13990 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_13995 PF13416 Bacterial extracellular solute-binding protein LLY41_14000 PF00933 Glycosyl hydrolase family 3 N terminal domain LLY41_14000 PF14310 Fibronectin type III-like domain LLY41_14000 PF01915 Glycosyl hydrolase family 3 C-terminal domain LLY41_14005 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LLY41_14015 PF00356 Bacterial regulatory proteins, lacI family LLY41_14025 PF03845 Spore germination protein LLY41_14035 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_14040 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_14045 PF00571 CBS domain LLY41_14045 PF00005 ABC transporter LLY41_14055 PF00390 Malic enzyme, N-terminal domain LLY41_14055 PF03949 Malic enzyme, NAD binding domain LLY41_14060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLY41_14060 PF03466 LysR substrate binding domain LLY41_14070 PF00199 Catalase LLY41_14070 PF06628 Catalase-related immune-responsive LLY41_14080 PF06800 Sugar transport protein LLY41_14085 PF00375 Sodium:dicarboxylate symporter family LLY41_14100 PF07556 Protein of unknown function (DUF1538) LLY41_14105 PF02868 Thermolysin metallopeptidase, alpha-helical domain LLY41_14105 PF07504 Fungalysin/Thermolysin Propeptide Motif LLY41_14105 PF03413 Peptidase propeptide and YPEB domain LLY41_14105 PF01447 Thermolysin metallopeptidase, catalytic domain LLY41_14110 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_14110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLY41_14140 PF07722 Peptidase C26 LLY41_14150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLY41_14155 PF00005 ABC transporter LLY41_14155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_14160 PF00005 ABC transporter LLY41_14160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_14165 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_14165 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_14170 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_14185 PF00478 IMP dehydrogenase / GMP reductase domain LLY41_14200 PF00155 Aminotransferase class I and II LLY41_14210 PF01596 O-methyltransferase LLY41_14235 PF07486 Cell Wall Hydrolase LLY41_14240 PF13302 Acetyltransferase (GNAT) domain LLY41_14250 PF04973 Nicotinamide mononucleotide transporter LLY41_14260 PF01758 Sodium Bile acid symporter family LLY41_14265 PF02913 FAD linked oxidases, C-terminal domain LLY41_14265 PF01565 FAD binding domain LLY41_14270 PF00392 Bacterial regulatory proteins, gntR family LLY41_14270 PF07729 FCD domain LLY41_14295 PF07308 Protein of unknown function (DUF1456) LLY41_14310 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LLY41_14310 PF18766 SWI2/SNF2 ATPase LLY41_14310 PF11867 Domain of unknown function (DUF3387) LLY41_14315 PF01420 Type I restriction modification DNA specificity domain LLY41_14320 PF02384 N-6 DNA Methylase LLY41_14390 PF02899 Phage integrase, N-terminal SAM-like domain LLY41_14390 PF00589 Phage integrase family LLY41_14400 PF11084 Protein of unknown function (DUF2621) LLY41_14410 PF07301 Protein of unknown function (DUF1453) LLY41_14415 PF00072 Response regulator receiver domain LLY41_14420 PF02683 Cytochrome C biogenesis protein transmembrane region LLY41_14430 PF00005 ABC transporter LLY41_14430 PF00664 ABC transporter transmembrane region LLY41_14435 PF00664 ABC transporter transmembrane region LLY41_14435 PF00005 ABC transporter LLY41_14445 PF03672 Uncharacterised protein family (UPF0154) LLY41_14450 PF10747 Sporulation inhibitor of replication protein SirA LLY41_14455 PF02779 Transketolase, pyrimidine binding domain LLY41_14455 PF02780 Transketolase, C-terminal domain LLY41_14455 PF00456 Transketolase, thiamine diphosphate binding domain LLY41_14460 PF05979 Bacterial protein of unknown function (DUF896) LLY41_14465 PF00239 Resolvase, N terminal domain LLY41_14475 PF01726 LexA DNA binding domain LLY41_14475 PF00717 Peptidase S24-like LLY41_14480 PF14074 Protein of unknown function (DUF4257) LLY41_14485 PF00120 Glutamine synthetase, catalytic domain LLY41_14485 PF03951 Glutamine synthetase, beta-Grasp domain LLY41_14490 PF13411 MerR HTH family regulatory protein LLY41_14495 PF06838 Methionine gamma-lyase LLY41_14500 PF01926 50S ribosome-binding GTPase LLY41_14500 PF16360 GTP-binding GTPase Middle Region LLY41_14500 PF13167 GTP-binding GTPase N-terminal LLY41_14505 PF03458 UPF0126 domain LLY41_14515 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_14515 PF17866 AAA lid domain LLY41_14520 PF17209 Hfq protein LLY41_14535 PF01119 DNA mismatch repair protein, C-terminal domain LLY41_14535 PF08676 MutL C terminal dimerisation domain LLY41_14540 PF01624 MutS domain I LLY41_14540 PF05188 MutS domain II LLY41_14540 PF05192 MutS domain III LLY41_14540 PF05190 MutS family domain IV LLY41_14540 PF00488 MutS domain V LLY41_14545 PF08000 Bacterial PH domain LLY41_14545 PF11724 YvbH-like oligomerisation region LLY41_14550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLY41_14555 PF10628 Outer spore coat protein E (CotE) LLY41_14575 PF06133 Control of competence regulator ComK, YlbF/YmcA LLY41_14580 PF01938 TRAM domain LLY41_14580 PF00919 Uncharacterized protein family UPF0004 LLY41_14580 PF04055 Radical SAM superfamily LLY41_14585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LLY41_14590 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LLY41_14590 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LLY41_14590 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LLY41_14595 PF01244 Membrane dipeptidase (Peptidase family M19) LLY41_14600 PF04232 Stage V sporulation protein S (SpoVS) LLY41_14605 PF13277 YmdB-like protein LLY41_14610 PF01966 HD domain LLY41_14610 PF00013 KH domain LLY41_14610 PF12072 Domain of unknown function (DUF3552) LLY41_14615 PF00154 recA bacterial DNA recombination protein LLY41_14620 PF00994 Probable molybdopterin binding domain LLY41_14620 PF18146 Damage-inducible protein CinA KH domain LLY41_14620 PF02464 Competence-damaged protein LLY41_14625 PF01066 CDP-alcohol phosphatidyltransferase LLY41_14630 PF13464 Domain of unknown function (DUF4115) LLY41_14635 PF11868 Protein of unknown function (DUF3388) LLY41_14640 PF11588 Protein of unknown function (DUF3243) LLY41_14655 PF05193 Peptidase M16 inactive domain LLY41_14660 PF02653 Branched-chain amino acid transport system / permease component LLY41_14665 PF02653 Branched-chain amino acid transport system / permease component LLY41_14670 PF00005 ABC transporter LLY41_14675 PF02608 ABC transporter substrate-binding protein PnrA-like LLY41_14680 PF00392 Bacterial regulatory proteins, gntR family LLY41_14680 PF07702 UTRA domain LLY41_14685 PF01580 FtsK/SpoIIIE family LLY41_14685 PF09397 Ftsk gamma domain LLY41_14685 PF17854 FtsK alpha domain LLY41_14690 PF14035 YlzJ-like protein LLY41_14695 PF00574 Clp protease LLY41_14705 PF00701 Dihydrodipicolinate synthetase family LLY41_14710 PF00696 Amino acid kinase family LLY41_14710 PF13840 ACT domain LLY41_14715 PF01118 Semialdehyde dehydrogenase, NAD binding domain LLY41_14715 PF02774 Semialdehyde dehydrogenase, dimerisation domain LLY41_14720 PF02441 Flavoprotein LLY41_14725 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LLY41_14725 PF16924 Dipicolinate synthase subunit A N-terminal domain LLY41_14730 PF05239 PRC-barrel domain LLY41_14735 PF00675 Insulinase (Peptidase family M16) LLY41_14735 PF05193 Peptidase M16 inactive domain LLY41_14740 PF01522 Polysaccharide deacetylase LLY41_14750 PF00312 Ribosomal protein S15 LLY41_14755 PF01687 Riboflavin kinase LLY41_14755 PF06574 FAD synthetase LLY41_14760 PF01509 TruB family pseudouridylate synthase (N terminal domain) LLY41_14760 PF16198 tRNA pseudouridylate synthase B C-terminal domain LLY41_14765 PF02033 Ribosome-binding factor A LLY41_14770 PF04456 Protein of unknown function (DUF503) LLY41_14775 PF00009 Elongation factor Tu GTP binding domain LLY41_14775 PF11987 Translation-initiation factor 2 LLY41_14775 PF04760 Translation initiation factor IF-2, N-terminal region LLY41_14780 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LLY41_14785 PF04296 Protein of unknown function (DUF448) LLY41_14790 PF08529 NusA N-terminal domain LLY41_14790 PF13184 NusA-like KH domain LLY41_14790 PF00575 S1 RNA binding domain LLY41_14795 PF17384 RimP C-terminal SH3 domain LLY41_14795 PF02576 RimP N-terminal domain LLY41_14800 PF00929 Exonuclease LLY41_14800 PF02811 PHP domain LLY41_14800 PF14579 Helix-hairpin-helix motif LLY41_14800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LLY41_14800 PF07733 Bacterial DNA polymerase III alpha NTPase domain LLY41_14800 PF11490 DNA polymerase III polC-type N-terminus II LLY41_14800 PF14480 DNA polymerase III polC-type N-terminus I LLY41_14805 PF13180 PDZ domain LLY41_14805 PF02163 Peptidase family M50 LLY41_14820 PF01255 Putative undecaprenyl diphosphate synthase LLY41_14830 PF00696 Amino acid kinase family LLY41_14835 PF00889 Elongation factor TS LLY41_14840 PF00318 Ribosomal protein S2 LLY41_14855 PF04542 Sigma-70 region 2 LLY41_14855 PF04545 Sigma-70, region 4 LLY41_14855 PF04539 Sigma-70 region 3 LLY41_14860 PF03975 CheD chemotactic sensory transduction LLY41_14865 PF04509 CheC-like family LLY41_14870 PF01584 CheW-like domain LLY41_14875 PF02895 Signal transducing histidine kinase, homodimeric domain LLY41_14875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_14875 PF01627 Hpt domain LLY41_14875 PF01584 CheW-like domain LLY41_14875 PF07194 P2 response regulator binding domain LLY41_14880 PF01339 CheB methylesterase LLY41_14880 PF00072 Response regulator receiver domain LLY41_14885 PF10609 NUBPL iron-transfer P-loop NTPase LLY41_14890 PF00448 SRP54-type protein, GTPase domain LLY41_14895 PF00771 FHIPEP family LLY41_14900 PF01312 FlhB HrpN YscU SpaS Family LLY41_14910 PF01313 Bacterial export proteins, family 3 LLY41_14915 PF00813 FliP family LLY41_14920 PF04347 Flagellar biosynthesis protein, FliO LLY41_14925 PF00072 Response regulator receiver domain LLY41_14935 PF04509 CheC-like family LLY41_14935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LLY41_14940 PF02154 Flagellar motor switch protein FliM LLY41_14940 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LLY41_14945 PF03748 Flagellar basal body-associated protein FliL LLY41_14950 PF06289 Flagellar and Swarming motility proteins LLY41_14955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLY41_14955 PF00460 Flagella basal body rod protein LLY41_14965 PF03963 Flagellar hook capping protein - N-terminal region LLY41_14980 PF02050 Flagellar FliJ protein LLY41_14985 PF18269 T3SS EscN ATPase C-terminal domain LLY41_14985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLY41_14985 PF02874 ATP synthase alpha/beta family, beta-barrel domain LLY41_14990 PF02108 Flagellar assembly protein FliH LLY41_14995 PF14841 FliG middle domain LLY41_14995 PF01706 FliG C-terminal domain LLY41_14995 PF14842 FliG N-terminal domain LLY41_15000 PF01514 Secretory protein of YscJ/FliF family LLY41_15000 PF08345 Flagellar M-ring protein C-terminal LLY41_15005 PF02049 Flagellar hook-basal body complex protein FliE LLY41_15010 PF00460 Flagella basal body rod protein LLY41_15010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLY41_15015 PF00460 Flagella basal body rod protein LLY41_15020 PF08222 CodY helix-turn-helix domain LLY41_15020 PF06018 CodY GAF-like domain LLY41_15025 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_15025 PF07724 AAA domain (Cdc48 subfamily) LLY41_15025 PF10431 C-terminal, D2-small domain, of ClpB protein LLY41_15030 PF00227 Proteasome subunit LLY41_15035 PF02899 Phage integrase, N-terminal SAM-like domain LLY41_15035 PF00589 Phage integrase family LLY41_15040 PF01134 Glucose inhibited division protein A LLY41_15050 PF02481 DNA recombination-mediator protein A LLY41_15055 PF00549 CoA-ligase LLY41_15055 PF02629 CoA binding domain LLY41_15060 PF00549 CoA-ligase LLY41_15060 PF08442 ATP-grasp domain LLY41_15065 PF01312 FlhB HrpN YscU SpaS Family LLY41_15075 PF01351 Ribonuclease HII LLY41_15080 PF01926 50S ribosome-binding GTPase LLY41_15085 PF10502 Signal peptidase, peptidase S26 LLY41_15090 PF01245 Ribosomal protein L19 LLY41_15095 PF01746 tRNA (Guanine-1)-methyltransferase LLY41_15100 PF05239 PRC-barrel domain LLY41_15100 PF01782 RimM N-terminal domain LLY41_15105 PF11068 YlqD protein LLY41_15115 PF00886 Ribosomal protein S16 LLY41_15120 PF00448 SRP54-type protein, GTPase domain LLY41_15120 PF02881 SRP54-type protein, helical bundle domain LLY41_15120 PF02978 Signal peptide binding domain LLY41_15125 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LLY41_15140 PF01882 Protein of unknown function DUF58 LLY41_15145 PF17863 AAA lid domain LLY41_15145 PF07726 ATPase family associated with various cellular activities (AAA) LLY41_15160 PF00005 ABC transporter LLY41_15175 PF02881 SRP54-type protein, helical bundle domain LLY41_15175 PF00448 SRP54-type protein, GTPase domain LLY41_15190 PF00550 Phosphopantetheine attachment site LLY41_15200 PF00698 Acyl transferase domain LLY41_15210 PF08279 HTH domain LLY41_15210 PF01575 MaoC like domain LLY41_15215 PF00270 DEAD/DEAH box helicase LLY41_15215 PF00271 Helicase conserved C-terminal domain LLY41_15215 PF17191 RecG wedge domain LLY41_15220 PF13684 Dihydroxyacetone kinase family LLY41_15220 PF02734 DAK2 domain LLY41_15225 PF03780 Asp23 family, cell envelope-related function LLY41_15230 PF00830 Ribosomal L28 family LLY41_15235 PF08183 Stage V sporulation protein family LLY41_15240 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain LLY41_15240 PF04263 Thiamin pyrophosphokinase, catalytic domain LLY41_15245 PF00834 Ribulose-phosphate 3 epimerase family LLY41_15250 PF16745 RsgA N-terminal domain LLY41_15250 PF03193 RsgA GTPase LLY41_15255 PF00069 Protein kinase domain LLY41_15255 PF03793 PASTA domain LLY41_15265 PF04055 Radical SAM superfamily LLY41_15270 PF01189 16S rRNA methyltransferase RsmB/F LLY41_15270 PF01029 NusB family LLY41_15275 PF02911 Formyl transferase, C-terminal domain LLY41_15275 PF00551 Formyl transferase LLY41_15280 PF01327 Polypeptide deformylase LLY41_15295 PF01192 RNA polymerase Rpb6 LLY41_15300 PF00625 Guanylate kinase LLY41_15305 PF04025 Domain of unknown function (DUF370) LLY41_15310 PF03755 YicC-like family, N-terminal region LLY41_15310 PF08340 Domain of unknown function (DUF1732) LLY41_15315 PF00689 Cation transporting ATPase, C-terminus LLY41_15315 PF00690 Cation transporter/ATPase, N-terminus LLY41_15320 PF05670 NFACT protein RNA binding domain LLY41_15325 PF00156 Phosphoribosyl transferase domain LLY41_15330 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LLY41_15335 PF01180 Dihydroorotate dehydrogenase LLY41_15350 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LLY41_15350 PF00117 Glutamine amidotransferase class-I LLY41_15355 PF01979 Amidohydrolase family LLY41_15360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LLY41_15360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LLY41_15370 PF00156 Phosphoribosyl transferase domain LLY41_15375 PF00849 RNA pseudouridylate synthase LLY41_15375 PF01479 S4 domain LLY41_15380 PF01252 Signal peptidase (SPase) II LLY41_15390 PF08264 Anticodon-binding domain of tRNA LLY41_15390 PF00133 tRNA synthetases class I (I, L, M and V) LLY41_15390 PF06827 Zinc finger found in FPG and IleRS LLY41_15395 PF05103 DivIVA protein LLY41_15400 PF01479 S4 domain LLY41_15400 PF17774 Putative RNA-binding domain in YlmH LLY41_15405 PF02325 YGGT family LLY41_15410 PF04472 Cell division protein SepF LLY41_15415 PF01168 Alanine racemase, N-terminal domain LLY41_15420 PF02578 Multi-copper polyphenol oxidoreductase laccase LLY41_15425 PF05239 PRC-barrel domain LLY41_15430 PF04545 Sigma-70, region 4 LLY41_15430 PF04542 Sigma-70 region 2 LLY41_15430 PF04539 Sigma-70 region 3 LLY41_15435 PF04545 Sigma-70, region 4 LLY41_15435 PF04542 Sigma-70 region 2 LLY41_15440 PF03419 Sporulation factor SpoIIGA LLY41_15445 PF00970 Oxidoreductase FAD-binding domain LLY41_15445 PF00175 Oxidoreductase NAD-binding domain LLY41_15445 PF00042 Globin LLY41_15450 PF12327 FtsZ family, C-terminal domain LLY41_15450 PF00091 Tubulin/FtsZ family, GTPase domain LLY41_15460 PF06947 Protein of unknown function (DUF1290) LLY41_15465 PF05949 Bacterial protein of unknown function (DUF881) LLY41_15470 PF05949 Bacterial protein of unknown function (DUF881) LLY41_15480 PF01565 FAD binding domain LLY41_15480 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LLY41_15485 PF04101 Glycosyltransferase family 28 C-terminal domain LLY41_15485 PF03033 Glycosyltransferase family 28 N-terminal domain LLY41_15490 PF01098 Cell cycle protein LLY41_15495 PF08245 Mur ligase middle domain LLY41_15495 PF02875 Mur ligase family, glutamate ligase domain LLY41_15500 PF00953 Glycosyl transferase family 4 LLY41_15510 PF01225 Mur ligase family, catalytic domain LLY41_15510 PF02875 Mur ligase family, glutamate ligase domain LLY41_15510 PF08245 Mur ligase middle domain LLY41_15520 PF03793 PASTA domain LLY41_15520 PF03717 Penicillin-binding Protein dimerisation domain LLY41_15520 PF00905 Penicillin binding protein transpeptidase domain LLY41_15535 PF01795 MraW methylase family LLY41_15540 PF02381 MraZ protein, putative antitoxin-like LLY41_15545 PF10079 Bacillithiol biosynthesis BshC LLY41_15555 PF02558 Ketopantoate reductase PanE/ApbA LLY41_15555 PF08546 Ketopantoate reductase PanE/ApbA C terminal LLY41_15560 PF01039 Carboxyl transferase domain LLY41_15565 PF00364 Biotin-requiring enzyme LLY41_15570 PF00289 Biotin carboxylase, N-terminal domain LLY41_15570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLY41_15570 PF02785 Biotin carboxylase C-terminal domain LLY41_15585 PF00378 Enoyl-CoA hydratase/isomerase LLY41_15590 PF01783 Ribosomal L32p protein family LLY41_15595 PF02620 Large ribosomal RNA subunit accumulation protein YceD LLY41_15600 PF05636 HIGH Nucleotidyl Transferase LLY41_15605 PF05362 Lon protease (S16) C-terminal proteolytic domain LLY41_15605 PF13180 PDZ domain LLY41_15610 PF01734 Patatin-like phospholipase LLY41_15615 PF07670 Nucleoside recognition LLY41_15620 PF01467 Cytidylyltransferase-like LLY41_15640 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) LLY41_15645 PF06133 Control of competence regulator ComK, YlbF/YmcA LLY41_15655 PF14003 YlbE-like protein LLY41_15675 PF00188 Cysteine-rich secretory protein family LLY41_15675 PF14504 CAP-associated N-terminal LLY41_15680 PF00571 CBS domain LLY41_15690 PF08868 YugN-like family LLY41_15700 PF01594 AI-2E family transporter LLY41_15715 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) LLY41_15720 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LLY41_15725 PF00510 Cytochrome c oxidase subunit III LLY41_15730 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLY41_15740 PF01040 UbiA prenyltransferase family LLY41_15745 PF02628 Cytochrome oxidase assembly protein LLY41_15750 PF02785 Biotin carboxylase C-terminal domain LLY41_15750 PF02436 Conserved carboxylase domain LLY41_15750 PF00364 Biotin-requiring enzyme LLY41_15750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLY41_15750 PF00289 Biotin carboxylase, N-terminal domain LLY41_15750 PF00682 HMGL-like LLY41_15755 PF01098 Cell cycle protein LLY41_15760 PF07408 Protein of unknown function (DUF1507) LLY41_15770 PF02562 PhoH-like protein LLY41_15770 PF13638 PIN domain LLY41_15775 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LLY41_15785 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) LLY41_15795 PF14036 YlaH-like protein LLY41_15800 PF00679 Elongation factor G C-terminus LLY41_15800 PF14492 Elongation Factor G, domain II LLY41_15800 PF00009 Elongation factor Tu GTP binding domain LLY41_15800 PF03144 Elongation factor Tu domain 2 LLY41_15810 PF00583 Acetyltransferase (GNAT) family LLY41_15815 PF00459 Inositol monophosphatase family LLY41_15825 PF06335 Protein of unknown function (DUF1054) LLY41_15830 PF05256 Uncharacterised protein family (UPF0223) LLY41_15835 PF03060 Nitronate monooxygenase LLY41_15840 PF01276 Orn/Lys/Arg decarboxylase, major domain LLY41_15840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LLY41_15865 PF02028 BCCT, betaine/carnitine/choline family transporter LLY41_15880 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_15880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLY41_15885 PF02817 e3 binding domain LLY41_15885 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLY41_15885 PF00364 Biotin-requiring enzyme LLY41_15890 PF02779 Transketolase, pyrimidine binding domain LLY41_15890 PF02780 Transketolase, C-terminal domain LLY41_15895 PF00676 Dehydrogenase E1 component LLY41_15910 PF01327 Polypeptide deformylase LLY41_15920 PF07288 Protein of unknown function (DUF1447) LLY41_15925 PF17770 Ribonuclease J C-terminal domain LLY41_15925 PF00753 Metallo-beta-lactamase superfamily LLY41_15925 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LLY41_15930 PF02080 TrkA-C domain LLY41_15930 PF02254 TrkA-N domain LLY41_15935 PF00664 ABC transporter transmembrane region LLY41_15935 PF00005 ABC transporter LLY41_15940 PF00664 ABC transporter transmembrane region LLY41_15940 PF00005 ABC transporter LLY41_15945 PF07687 Peptidase dimerisation domain LLY41_15945 PF01546 Peptidase family M20/M25/M40 LLY41_15950 PF00132 Bacterial transferase hexapeptide (six repeats) LLY41_15950 PF14602 Hexapeptide repeat of succinyl-transferase LLY41_15950 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LLY41_15955 PF03466 LysR substrate binding domain LLY41_15955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLY41_15960 PF07690 Major Facilitator Superfamily LLY41_15980 PF08796 Protein of unknown function (DUF1797) LLY41_15985 PF00753 Metallo-beta-lactamase superfamily LLY41_16010 PF13529 Peptidase_C39 like family LLY41_16020 PF00149 Calcineurin-like phosphoesterase LLY41_16020 PF10518 TAT (twin-arginine translocation) pathway signal sequence LLY41_16025 PF01476 LysM domain LLY41_16025 PF03734 L,D-transpeptidase catalytic domain LLY41_16040 PF14177 YkyB-like protein LLY41_16045 PF01584 CheW-like domain LLY41_16045 PF00072 Response regulator receiver domain LLY41_16060 PF06271 RDD family LLY41_16070 PF00155 Aminotransferase class I and II LLY41_16075 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LLY41_16075 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LLY41_16085 PF02896 PEP-utilising enzyme, TIM barrel domain LLY41_16085 PF00391 PEP-utilising enzyme, mobile domain LLY41_16085 PF05524 PEP-utilising enzyme, N-terminal LLY41_16090 PF00381 PTS HPr component phosphorylation site LLY41_16100 PF03649 Uncharacterised protein family (UPF0014) LLY41_16105 PF00005 ABC transporter LLY41_16125 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) LLY41_16150 PF07724 AAA domain (Cdc48 subfamily) LLY41_16150 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_16150 PF10431 C-terminal, D2-small domain, of ClpB protein LLY41_16150 PF17871 AAA lid domain LLY41_16160 PF01047 MarR family LLY41_16165 PF00149 Calcineurin-like phosphoesterase LLY41_16165 PF02872 5'-nucleotidase, C-terminal domain LLY41_16170 PF02743 Cache domain LLY41_16170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_16170 PF00512 His Kinase A (phospho-acceptor) domain LLY41_16175 PF01636 Phosphotransferase enzyme family LLY41_16180 PF07690 Major Facilitator Superfamily LLY41_16185 PF01814 Hemerythrin HHE cation binding domain LLY41_16185 PF04405 Domain of Unknown function (DUF542) LLY41_16205 PF01012 Electron transfer flavoprotein domain LLY41_16205 PF00766 Electron transfer flavoprotein FAD-binding domain LLY41_16210 PF01012 Electron transfer flavoprotein domain LLY41_16220 PF00155 Aminotransferase class I and II LLY41_16225 PF00795 Carbon-nitrogen hydrolase LLY41_16230 PF01022 Bacterial regulatory protein, arsR family LLY41_16235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LLY41_16235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LLY41_16240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_16240 PF00512 His Kinase A (phospho-acceptor) domain LLY41_16240 PF00989 PAS fold LLY41_16240 PF13188 PAS domain LLY41_16240 PF13426 PAS domain LLY41_16245 PF12729 Four helix bundle sensory module for signal transduction LLY41_16245 PF00672 HAMP domain LLY41_16245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_16250 PF01757 Acyltransferase family LLY41_16280 PF02589 LUD domain LLY41_16285 PF11870 Domain of unknown function (DUF3390) LLY41_16285 PF13183 4Fe-4S dicluster domain LLY41_16285 PF02589 LUD domain LLY41_16290 PF02754 Cysteine-rich domain LLY41_16315 PF02386 Cation transport protein LLY41_16320 PF13556 PucR C-terminal helix-turn-helix domain LLY41_16320 PF17853 GGDEF-like domain LLY41_16320 PF05651 Putative sugar diacid recognition LLY41_16325 PF02913 FAD linked oxidases, C-terminal domain LLY41_16325 PF01565 FAD binding domain LLY41_16330 PF02754 Cysteine-rich domain LLY41_16330 PF13183 4Fe-4S dicluster domain LLY41_16335 PF00269 Small, acid-soluble spore proteins, alpha/beta type LLY41_16340 PF12791 Anti-sigma factor N-terminus LLY41_16345 PF04542 Sigma-70 region 2 LLY41_16355 PF00873 AcrB/AcrD/AcrF family LLY41_16360 PF03553 Na+/H+ antiporter family LLY41_16365 PF03144 Elongation factor Tu domain 2 LLY41_16365 PF00009 Elongation factor Tu GTP binding domain LLY41_16365 PF16658 Class II release factor RF3, C-terminal domain LLY41_16370 PF04307 LexA-binding, inner membrane-associated putative hydrolase LLY41_16375 PF01773 Na+ dependent nucleoside transporter N-terminus LLY41_16375 PF07662 Na+ dependent nucleoside transporter C-terminus LLY41_16380 PF00128 Alpha amylase, catalytic domain LLY41_16380 PF16657 Maltogenic Amylase, C-terminal domain LLY41_16385 PF00128 Alpha amylase, catalytic domain LLY41_16385 PF16657 Maltogenic Amylase, C-terminal domain LLY41_16390 PF00367 phosphotransferase system, EIIB LLY41_16390 PF02378 Phosphotransferase system, EIIC LLY41_16395 PF02416 mttA/Hcf106 family LLY41_16400 PF06803 Protein of unknown function (DUF1232) LLY41_16410 PF01910 Thiamine-binding protein LLY41_16420 PF00005 ABC transporter LLY41_16425 PF01026 TatD related DNase LLY41_16435 PF04542 Sigma-70 region 2 LLY41_16435 PF08281 Sigma-70, region 4 LLY41_16440 PF00082 Subtilase family LLY41_16440 PF05922 Peptidase inhibitor I9 LLY41_16445 PF00005 ABC transporter LLY41_16445 PF12848 ABC transporter LLY41_16450 PF00005 ABC transporter LLY41_16450 PF16326 ABC transporter C-terminal domain LLY41_16450 PF12848 ABC transporter LLY41_16465 PF09680 Family of unknown function LLY41_16480 PF03009 Glycerophosphoryl diester phosphodiesterase family LLY41_16485 PF08245 Mur ligase middle domain LLY41_16485 PF02875 Mur ligase family, glutamate ligase domain LLY41_16485 PF01225 Mur ligase family, catalytic domain LLY41_16495 PF02554 Carbon starvation protein CstA LLY41_16525 PF02811 PHP domain LLY41_16525 PF07733 Bacterial DNA polymerase III alpha NTPase domain LLY41_16525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LLY41_16525 PF14579 Helix-hairpin-helix motif LLY41_16525 PF00929 Exonuclease LLY41_16535 PF00909 Ammonium Transporter Family LLY41_16540 PF00269 Small, acid-soluble spore proteins, alpha/beta type LLY41_16550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLY41_16550 PF13378 Enolase C-terminal domain-like LLY41_16560 PF07670 Nucleoside recognition LLY41_16580 PF01619 Proline dehydrogenase LLY41_16590 PF13145 PPIC-type PPIASE domain LLY41_16620 PF16868 NMT1-like family LLY41_16625 PF00756 Putative esterase LLY41_16635 PF13673 Acetyltransferase (GNAT) domain LLY41_16640 PF04239 Protein of unknown function (DUF421) LLY41_16650 PF13361 UvrD-like helicase C-terminal domain LLY41_16650 PF00580 UvrD/REP helicase N-terminal domain LLY41_16655 PF14069 Stage VI sporulation protein F LLY41_16665 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LLY41_16670 PF07451 Stage V sporulation protein AD (SpoVAD) LLY41_16675 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LLY41_16685 PF07098 Protein of unknown function (DUF1360) LLY41_16710 PF00999 Sodium/hydrogen exchanger family LLY41_16710 PF02080 TrkA-C domain LLY41_16710 PF02254 TrkA-N domain LLY41_16715 PF03448 MgtE intracellular N domain LLY41_16715 PF01769 Divalent cation transporter LLY41_16715 PF00571 CBS domain LLY41_16720 PF00149 Calcineurin-like phosphoesterase LLY41_16730 PF01513 ATP-NAD kinase LLY41_16735 PF04607 Region found in RelA / SpoT proteins LLY41_16745 PF01928 CYTH domain LLY41_16750 PF01464 Transglycosylase SLT domain LLY41_16755 PF01152 Bacterial-like globin LLY41_16765 PF08439 Oligopeptidase F LLY41_16765 PF01432 Peptidase family M3 LLY41_16775 PF05389 Negative regulator of genetic competence (MecA) LLY41_16780 PF03960 ArsC family LLY41_16785 PF13508 Acetyltransferase (GNAT) domain LLY41_16800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_16800 PF00005 ABC transporter LLY41_16805 PF00005 ABC transporter LLY41_16805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_16810 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_16810 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_16815 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_16820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLY41_16825 PF00579 tRNA synthetases class I (W and Y) LLY41_16830 PF12227 Protein of unknown function (DUF3603) LLY41_16840 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_16840 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_16845 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_16850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLY41_16855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_16855 PF00005 ABC transporter LLY41_16860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_16860 PF00005 ABC transporter LLY41_16865 PF10026 Predicted Zn-dependent protease (DUF2268) LLY41_16875 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LLY41_16875 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LLY41_16885 PF10815 ComZ LLY41_16890 PF02608 ABC transporter substrate-binding protein PnrA-like LLY41_16910 PF17871 AAA lid domain LLY41_16910 PF00004 ATPase family associated with various cellular activities (AAA) LLY41_16910 PF07724 AAA domain (Cdc48 subfamily) LLY41_16910 PF02861 Clp amino terminal domain, pathogenicity island component LLY41_16910 PF10431 C-terminal, D2-small domain, of ClpB protein LLY41_16915 PF14168 YjzC-like protein LLY41_16920 PF02673 Bacitracin resistance protein BacA LLY41_16925 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LLY41_16925 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LLY41_16930 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LLY41_16930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLY41_16935 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LLY41_16935 PF00117 Glutamine amidotransferase class-I LLY41_16940 PF00202 Aminotransferase class-III LLY41_16945 PF00696 Amino acid kinase family LLY41_16950 PF01960 ArgJ family LLY41_16955 PF02774 Semialdehyde dehydrogenase, dimerisation domain LLY41_16955 PF01118 Semialdehyde dehydrogenase, NAD binding domain LLY41_16960 PF14256 YwiC-like protein LLY41_16965 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LLY41_16970 PF03454 MoeA C-terminal region (domain IV) LLY41_16970 PF03453 MoeA N-terminal region (domain I and II) LLY41_16970 PF00994 Probable molybdopterin binding domain LLY41_16975 PF01814 Hemerythrin HHE cation binding domain LLY41_16975 PF04405 Domain of Unknown function (DUF542) LLY41_16980 PF06463 Molybdenum Cofactor Synthesis C LLY41_16980 PF04055 Radical SAM superfamily LLY41_16985 PF00027 Cyclic nucleotide-binding domain LLY41_16985 PF00325 Bacterial regulatory proteins, crp family LLY41_16990 PF13186 Iron-sulfur cluster-binding domain LLY41_16990 PF04055 Radical SAM superfamily LLY41_16995 PF01883 Iron-sulfur cluster assembly protein LLY41_17000 PF00326 Prolyl oligopeptidase family LLY41_17015 PF12758 Protein of unknown function (DUF3813) LLY41_17030 PF02645 Uncharacterised protein, DegV family COG1307 LLY41_17040 PF17783 CvfB-like winged helix domain LLY41_17040 PF13509 S1 domain LLY41_17045 PF04461 Protein of unknown function (DUF520) LLY41_17050 PF13302 Acetyltransferase (GNAT) domain LLY41_17060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LLY41_17060 PF00356 Bacterial regulatory proteins, lacI family LLY41_17065 PF01373 Glycosyl hydrolase family 14 LLY41_17065 PF03423 Carbohydrate binding domain (family 25) LLY41_17065 PF00128 Alpha amylase, catalytic domain LLY41_17070 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_17075 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_17080 PF13416 Bacterial extracellular solute-binding protein LLY41_17085 PF00128 Alpha amylase, catalytic domain LLY41_17085 PF02903 Alpha amylase, N-terminal ig-like domain LLY41_17085 PF16657 Maltogenic Amylase, C-terminal domain LLY41_17090 PF01554 MatE LLY41_17095 PF13537 Glutamine amidotransferase domain LLY41_17095 PF00733 Asparagine synthase LLY41_17105 PF03707 Bacterial signalling protein N terminal repeat LLY41_17105 PF00563 EAL domain LLY41_17105 PF00990 Diguanylate cyclase, GGDEF domain LLY41_17110 PF07457 Protein of unknown function (DUF1516) LLY41_17115 PF01557 Fumarylacetoacetate (FAA) hydrolase family LLY41_17120 PF04235 Protein of unknown function (DUF418) LLY41_17130 PF10676 Spore germination protein gerPA/gerPF LLY41_17135 PF10803 Spore germination GerPB LLY41_17140 PF10737 Spore germination protein GerPC LLY41_17155 PF10676 Spore germination protein gerPA/gerPF LLY41_17160 PF13361 UvrD-like helicase C-terminal domain LLY41_17160 PF00580 UvrD/REP helicase N-terminal domain LLY41_17160 PF12705 PD-(D/E)XK nuclease superfamily LLY41_17165 PF12705 PD-(D/E)XK nuclease superfamily LLY41_17165 PF13361 UvrD-like helicase C-terminal domain LLY41_17175 PF07690 Major Facilitator Superfamily LLY41_17185 PF02803 Thiolase, C-terminal domain LLY41_17185 PF00108 Thiolase, N-terminal domain LLY41_17200 PF10502 Signal peptidase, peptidase S26 LLY41_17205 PF09335 SNARE associated Golgi protein LLY41_17210 PF03816 Cell envelope-related transcriptional attenuator domain LLY41_17215 PF07676 WD40-like Beta Propeller Repeat LLY41_17215 PF00326 Prolyl oligopeptidase family LLY41_17225 PF06338 ComK protein LLY41_17240 PF01435 Peptidase family M48 LLY41_17240 PF16491 CAAX prenyl protease N-terminal, five membrane helices LLY41_17250 PF03591 AzlC protein LLY41_17255 PF09383 NIL domain LLY41_17255 PF00005 ABC transporter LLY41_17270 PF00378 Enoyl-CoA hydratase/isomerase LLY41_17275 PF13193 AMP-binding enzyme C-terminal domain LLY41_17275 PF00501 AMP-binding enzyme LLY41_17280 PF10437 Bacterial lipoate protein ligase C-terminus LLY41_17280 PF03099 Biotin/lipoate A/B protein ligase family LLY41_17285 PF12706 Beta-lactamase superfamily domain LLY41_17290 PF14149 YhfH-like protein LLY41_17300 PF00440 Bacterial regulatory proteins, tetR family LLY41_17300 PF17932 Tetracyclin repressor-like, C-terminal domain LLY41_17305 PF01593 Flavin containing amine oxidoreductase LLY41_17310 PF00762 Ferrochelatase LLY41_17315 PF01208 Uroporphyrinogen decarboxylase (URO-D) LLY41_17320 PF03992 Antibiotic biosynthesis monooxygenase LLY41_17325 PF00196 Bacterial regulatory proteins, luxR family LLY41_17325 PF00072 Response regulator receiver domain LLY41_17330 PF00672 HAMP domain LLY41_17330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_17330 PF07730 Histidine kinase LLY41_17345 PF01569 PAP2 superfamily LLY41_17350 PF01546 Peptidase family M20/M25/M40 LLY41_17350 PF07687 Peptidase dimerisation domain LLY41_17355 PF12787 EcsC protein family LLY41_17360 PF05975 Bacterial ABC transporter protein EcsB LLY41_17365 PF00005 ABC transporter LLY41_17370 PF01230 HIT domain LLY41_17375 PF00266 Aminotransferase class-V LLY41_17380 PF17099 Tryptophan transporter TrpP LLY41_17390 PF01047 MarR family LLY41_17410 PF09680 Family of unknown function LLY41_17415 PF05698 Bacterial trigger factor protein (TF) C-terminus LLY41_17420 PF14147 Sporulation protein YhaL LLY41_17425 PF01966 HD domain LLY41_17425 PF01336 OB-fold nucleic acid binding domain LLY41_17430 PF13514 AAA domain LLY41_17435 PF00149 Calcineurin-like phosphoesterase LLY41_17440 PF01810 LysE type translocator LLY41_17450 PF00005 ABC transporter LLY41_17450 PF13732 Domain of unknown function (DUF4162) LLY41_17460 PF00378 Enoyl-CoA hydratase/isomerase LLY41_17465 PF00501 AMP-binding enzyme LLY41_17465 PF13193 AMP-binding enzyme C-terminal domain LLY41_17470 PF04055 Radical SAM superfamily LLY41_17480 PF07615 YKOF-related Family LLY41_17485 PF09819 ABC-type cobalt transport system, permease component LLY41_17490 PF00005 ABC transporter LLY41_17495 PF02361 Cobalt transport protein LLY41_17500 PF00269 Small, acid-soluble spore proteins, alpha/beta type LLY41_17510 PF06133 Control of competence regulator ComK, YlbF/YmcA LLY41_17515 PF04286 Protein of unknown function (DUF445) LLY41_17520 PF14398 YheC/D like ATP-grasp LLY41_17525 PF14398 YheC/D like ATP-grasp LLY41_17530 PF14398 YheC/D like ATP-grasp LLY41_17535 PF14398 YheC/D like ATP-grasp LLY41_17545 PF17277 Family of unknown function (DUF5342) LLY41_17555 PF02583 Metal-sensitive transcriptional repressor LLY41_17560 PF13556 PucR C-terminal helix-turn-helix domain LLY41_17565 PF17912 MalK OB fold domain LLY41_17565 PF00005 ABC transporter LLY41_17565 PF03459 TOBE domain LLY41_17575 PF00269 Small, acid-soluble spore proteins, alpha/beta type LLY41_17580 PF00206 Lyase LLY41_17580 PF10415 Fumarase C C-terminus LLY41_17585 PF00664 ABC transporter transmembrane region LLY41_17585 PF00005 ABC transporter LLY41_17590 PF00664 ABC transporter transmembrane region LLY41_17590 PF00005 ABC transporter LLY41_17600 PF01906 Putative heavy-metal-binding LLY41_17620 PF04542 Sigma-70 region 2 LLY41_17620 PF08281 Sigma-70, region 4 LLY41_17625 PF07690 Major Facilitator Superfamily LLY41_17640 PF00912 Transglycosylase LLY41_17640 PF00905 Penicillin binding protein transpeptidase domain LLY41_17645 PF00582 Universal stress protein family LLY41_17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_17655 PF00512 His Kinase A (phospho-acceptor) domain LLY41_17655 PF00989 PAS fold LLY41_17660 PF13302 Acetyltransferase (GNAT) domain LLY41_17665 PF00571 CBS domain LLY41_17665 PF03471 Transporter associated domain LLY41_17665 PF01595 Cyclin M transmembrane N-terminal domain LLY41_17670 PF13411 MerR HTH family regulatory protein LLY41_17675 PF01595 Cyclin M transmembrane N-terminal domain LLY41_17675 PF03471 Transporter associated domain LLY41_17675 PF00571 CBS domain LLY41_17680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_17680 PF00512 His Kinase A (phospho-acceptor) domain LLY41_17680 PF00672 HAMP domain LLY41_17685 PF00486 Transcriptional regulatory protein, C terminal LLY41_17685 PF00072 Response regulator receiver domain LLY41_17695 PF01022 Bacterial regulatory protein, arsR family LLY41_17700 PF16916 Dimerisation domain of Zinc Transporter LLY41_17700 PF01545 Cation efflux family LLY41_17705 PF00860 Permease family LLY41_17715 PF03631 Virulence factor BrkB LLY41_17720 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LLY41_17720 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LLY41_17730 PF01925 Sulfite exporter TauE/SafE LLY41_17735 PF01206 Sulfurtransferase TusA LLY41_17740 PF00753 Metallo-beta-lactamase superfamily LLY41_17740 PF00581 Rhodanese-like domain LLY41_17745 PF00581 Rhodanese-like domain LLY41_17745 PF01206 Sulfurtransferase TusA LLY41_17750 PF13686 DsrE/DsrF/DrsH-like family LLY41_17755 PF00581 Rhodanese-like domain LLY41_17760 PF00581 Rhodanese-like domain LLY41_17760 PF17773 UPF0176 acylphosphatase like domain LLY41_17765 PF02583 Metal-sensitive transcriptional repressor LLY41_17775 PF04293 SpoVR like protein LLY41_17785 PF14148 YhdB-like protein LLY41_17790 PF03358 NADPH-dependent FMN reductase LLY41_17795 PF00196 Bacterial regulatory proteins, luxR family LLY41_17795 PF00072 Response regulator receiver domain LLY41_17800 PF13185 GAF domain LLY41_17800 PF07730 Histidine kinase LLY41_17805 PF00106 short chain dehydrogenase LLY41_17810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LLY41_17810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LLY41_17810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LLY41_17810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LLY41_17815 PF00795 Carbon-nitrogen hydrolase LLY41_17815 PF00583 Acetyltransferase (GNAT) family LLY41_17820 PF02600 Disulfide bond formation protein DsbB LLY41_17825 PF00085 Thioredoxin LLY41_17835 PF01479 S4 domain LLY41_17835 PF00849 RNA pseudouridylate synthase LLY41_17840 PF04226 Transglycosylase associated protein LLY41_17845 PF13538 UvrD-like helicase C-terminal domain LLY41_17860 PF01865 Protein of unknown function DUF47 LLY41_17865 PF01384 Phosphate transporter family LLY41_17870 PF01546 Peptidase family M20/M25/M40 LLY41_17875 PF00860 Permease family LLY41_17880 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LLY41_17880 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LLY41_17885 PF00375 Sodium:dicarboxylate symporter family LLY41_17890 PF14748 Pyrroline-5-carboxylate reductase dimerisation LLY41_17890 PF03807 NADP oxidoreductase coenzyme F420-dependent LLY41_17895 PF02245 Methylpurine-DNA glycosylase (MPG) LLY41_17910 PF00742 Homoserine dehydrogenase LLY41_17910 PF03447 Homoserine dehydrogenase, NAD binding domain LLY41_17910 PF01842 ACT domain LLY41_17925 PF04285 Protein of unknown function (DUF444) LLY41_17940 PF06798 PrkA serine protein kinase C-terminal domain LLY41_17940 PF08298 PrkA AAA domain LLY41_17945 PF00881 Nitroreductase family LLY41_17950 PF00588 SpoU rRNA Methylase family LLY41_17955 PF12671 Putative amidase domain LLY41_17960 PF08331 Domain of unknown function (DUF1730) LLY41_17980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LLY41_17980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LLY41_17985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LLY41_17985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LLY41_17995 PF12833 Helix-turn-helix domain LLY41_17995 PF00072 Response regulator receiver domain LLY41_18000 PF06580 Histidine kinase LLY41_18000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_18000 PF00672 HAMP domain LLY41_18000 PF02743 Cache domain LLY41_18005 PF01547 Bacterial extracellular solute-binding protein LLY41_18010 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_18015 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_18020 PF00512 His Kinase A (phospho-acceptor) domain LLY41_18020 PF13426 PAS domain LLY41_18020 PF13188 PAS domain LLY41_18020 PF00989 PAS fold LLY41_18120 PF18576 Helix-turn-helix domain LLY41_18120 PF14540 Nucleotidyltransferase-like LLY41_18125 PF11023 Zinc-ribbon containing domain LLY41_18130 PF01475 Ferric uptake regulator family LLY41_18140 PF00578 AhpC/TSA family LLY41_18165 PF00202 Aminotransferase class-III LLY41_18170 PF01493 GXGXG motif LLY41_18170 PF04898 Glutamate synthase central domain LLY41_18170 PF00310 Glutamine amidotransferases class-II LLY41_18170 PF01645 Conserved region in glutamate synthase LLY41_18175 PF06081 Aromatic acid exporter family member 1 LLY41_18180 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_18180 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_18185 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_18190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLY41_18195 PF00005 ABC transporter LLY41_18195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_18200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_18200 PF00005 ABC transporter LLY41_18205 PF00664 ABC transporter transmembrane region LLY41_18205 PF00005 ABC transporter LLY41_18210 PF04167 Protein of unknown function (DUF402) LLY41_18215 PF14182 YgaB-like protein LLY41_18235 PF00730 HhH-GPD superfamily base excision DNA repair protein LLY41_18235 PF14815 NUDIX domain LLY41_18240 PF04307 LexA-binding, inner membrane-associated putative hydrolase LLY41_18245 PF14043 WVELL protein LLY41_18250 PF08176 Small acid-soluble spore protein K family LLY41_18260 PF08838 Protein of unknown function (DUF1811) LLY41_18265 PF00106 short chain dehydrogenase LLY41_18270 PF02631 RecX family LLY41_18275 PF08338 Domain of unknown function (DUF1731) LLY41_18275 PF01370 NAD dependent epimerase/dehydratase family LLY41_18295 PF01546 Peptidase family M20/M25/M40 LLY41_18295 PF07687 Peptidase dimerisation domain LLY41_18300 PF10138 vWA found in TerF C terminus LLY41_18305 PF00664 ABC transporter transmembrane region LLY41_18305 PF00005 ABC transporter LLY41_18310 PF00664 ABC transporter transmembrane region LLY41_18310 PF00005 ABC transporter LLY41_18315 PF03009 Glycerophosphoryl diester phosphodiesterase family LLY41_18320 PF00005 ABC transporter LLY41_18325 PF00005 ABC transporter LLY41_18325 PF12399 Branched-chain amino acid ATP-binding cassette transporter LLY41_18330 PF11862 Domain of unknown function (DUF3382) LLY41_18330 PF02653 Branched-chain amino acid transport system / permease component LLY41_18335 PF02653 Branched-chain amino acid transport system / permease component LLY41_18340 PF13458 Periplasmic binding protein LLY41_18345 PF01619 Proline dehydrogenase LLY41_18350 PF00474 Sodium:solute symporter family LLY41_18355 PF13556 PucR C-terminal helix-turn-helix domain LLY41_18355 PF17853 GGDEF-like domain LLY41_18370 PF13460 NAD(P)H-binding LLY41_18370 PF11066 Protein of unknown function (DUF2867) LLY41_18375 PF01645 Conserved region in glutamate synthase LLY41_18390 PF00364 Biotin-requiring enzyme LLY41_18390 PF00561 alpha/beta hydrolase fold LLY41_18400 PF04343 Protein of unknown function, DUF488 LLY41_18410 PF01593 Flavin containing amine oxidoreductase LLY41_18425 PF00255 Glutathione peroxidase LLY41_18440 PF06983 3-demethylubiquinone-9 3-methyltransferase LLY41_18445 PF02463 RecF/RecN/SMC N terminal domain LLY41_18455 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LLY41_18465 PF01207 Dihydrouridine synthase (Dus) LLY41_18475 PF05958 tRNA (Uracil-5-)-methyltransferase LLY41_18475 PF01938 TRAM domain LLY41_18480 PF00730 HhH-GPD superfamily base excision DNA repair protein LLY41_18485 PF01522 Polysaccharide deacetylase LLY41_18490 PF05683 Fumarase C-terminus LLY41_18490 PF05681 Fumarate hydratase (Fumerase) LLY41_18500 PF04239 Protein of unknown function (DUF421) LLY41_18515 PF08756 YfkB-like domain LLY41_18515 PF04055 Radical SAM superfamily LLY41_18520 PF14167 YfkD-like protein LLY41_18525 PF01699 Sodium/calcium exchanger protein LLY41_18540 PF07690 Major Facilitator Superfamily LLY41_18560 PF06569 Protein of unknown function (DUF1128) LLY41_18565 PF01965 DJ-1/PfpI family LLY41_18570 PF07702 UTRA domain LLY41_18570 PF00392 Bacterial regulatory proteins, gntR family LLY41_18575 PF13649 Methyltransferase domain LLY41_18590 PF08671 Anti-repressor SinI LLY41_18590 PF01381 Helix-turn-helix LLY41_18615 PF12389 Camelysin metallo-endopeptidase LLY41_18630 PF04203 Sortase domain LLY41_18640 PF04227 Indigoidine synthase A like protein LLY41_18645 PF00294 pfkB family carbohydrate kinase LLY41_18650 PF01235 Sodium:alanine symporter family LLY41_18655 PF01047 MarR family LLY41_18660 PF07690 Major Facilitator Superfamily LLY41_18665 PF00691 OmpA family LLY41_18665 PF13677 Membrane MotB of proton-channel complex MotA/MotB LLY41_18670 PF01618 MotA/TolQ/ExbB proton channel family LLY41_18685 PF09350 Domain of unknown function (DUF1992) LLY41_18700 PF00221 Aromatic amino acid lyase LLY41_18705 PF01740 STAS domain LLY41_18720 PF02073 Thermophilic metalloprotease (M29) LLY41_18740 PF00474 Sodium:solute symporter family LLY41_18750 PF14489 QueF-like protein LLY41_18755 PF01741 Large-conductance mechanosensitive channel, MscL LLY41_18760 PF01027 Inhibitor of apoptosis-promoting Bax1 LLY41_18780 PF13618 Gluconate 2-dehydrogenase subunit 3 LLY41_18785 PF05199 GMC oxidoreductase LLY41_18785 PF00732 GMC oxidoreductase LLY41_18790 PF02416 mttA/Hcf106 family LLY41_18795 PF00902 Sec-independent protein translocase protein (TatC) LLY41_18810 PF13302 Acetyltransferase (GNAT) domain LLY41_18815 PF01523 Putative modulator of DNA gyrase LLY41_18820 PF01523 Putative modulator of DNA gyrase LLY41_18825 PF13396 Phospholipase_D-nuclease N-terminal LLY41_18825 PF13091 PLD-like domain LLY41_18850 PF03061 Thioesterase superfamily LLY41_18855 PF08361 MAATS-type transcriptional repressor, C-terminal region LLY41_18855 PF00440 Bacterial regulatory proteins, tetR family LLY41_18865 PF01544 CorA-like Mg2+ transporter protein LLY41_18880 PF01943 Polysaccharide biosynthesis protein LLY41_18885 PF07670 Nucleoside recognition LLY41_18890 PF00202 Aminotransferase class-III LLY41_18910 PF00072 Response regulator receiver domain LLY41_18910 PF00196 Bacterial regulatory proteins, luxR family LLY41_18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_18915 PF07730 Histidine kinase LLY41_18925 PF04012 PspA/IM30 family LLY41_18940 PF04294 VanW like protein LLY41_18950 PF03737 Aldolase/RraA LLY41_18970 PF01053 Cys/Met metabolism PLP-dependent enzyme LLY41_18975 PF05504 Spore germination B3/ GerAC like, C-terminal LLY41_18980 PF03323 Bacillus/Clostridium GerA spore germination protein LLY41_18985 PF03845 Spore germination protein LLY41_18995 PF01266 FAD dependent oxidoreductase LLY41_18995 PF00355 Rieske [2Fe-2S] domain LLY41_19000 PF01425 Amidase LLY41_19005 PF00270 DEAD/DEAH box helicase LLY41_19005 PF00271 Helicase conserved C-terminal domain LLY41_19010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_19015 PF13188 PAS domain LLY41_19015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19015 PF00989 PAS fold LLY41_19015 PF13426 PAS domain LLY41_19015 PF00512 His Kinase A (phospho-acceptor) domain LLY41_19025 PF00082 Subtilase family LLY41_19030 PF01235 Sodium:alanine symporter family LLY41_19040 PF07690 Major Facilitator Superfamily LLY41_19050 PF00596 Class II Aldolase and Adducin N-terminal domain LLY41_19055 PF00082 Subtilase family LLY41_19060 PF01008 Initiation factor 2 subunit family LLY41_19065 PF01636 Phosphotransferase enzyme family LLY41_19070 PF01740 STAS domain LLY41_19080 PF10282 Lactonase, 7-bladed beta-propeller LLY41_19085 PF00672 HAMP domain LLY41_19085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLY41_19090 PF08240 Alcohol dehydrogenase GroES-like domain LLY41_19090 PF00107 Zinc-binding dehydrogenase LLY41_19095 PF00579 tRNA synthetases class I (W and Y) LLY41_19095 PF01479 S4 domain LLY41_19100 PF00557 Metallopeptidase family M24 LLY41_19115 PF00293 NUDIX domain LLY41_19125 PF13492 GAF domain LLY41_19125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19125 PF06580 Histidine kinase LLY41_19125 PF07694 5TMR of 5TMR-LYT LLY41_19130 PF04397 LytTr DNA-binding domain LLY41_19130 PF00072 Response regulator receiver domain LLY41_19135 PF02554 Carbon starvation protein CstA LLY41_19140 PF08546 Ketopantoate reductase PanE/ApbA C terminal LLY41_19140 PF02558 Ketopantoate reductase PanE/ApbA LLY41_19155 PF09962 Uncharacterized conserved protein (DUF2196) LLY41_19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19160 PF00512 His Kinase A (phospho-acceptor) domain LLY41_19165 PF07733 Bacterial DNA polymerase III alpha NTPase domain LLY41_19165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LLY41_19165 PF14579 Helix-hairpin-helix motif LLY41_19165 PF02811 PHP domain LLY41_19165 PF00929 Exonuclease LLY41_19180 PF01699 Sodium/calcium exchanger protein LLY41_19190 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLY41_19210 PF05163 DinB family LLY41_19215 PF02028 BCCT, betaine/carnitine/choline family transporter LLY41_19220 PF12833 Helix-turn-helix domain LLY41_19220 PF06445 GyrI-like small molecule binding domain LLY41_19225 PF18011 C-terminal domain found in long catalases LLY41_19225 PF06628 Catalase-related immune-responsive LLY41_19225 PF00199 Catalase LLY41_19230 PF00512 His Kinase A (phospho-acceptor) domain LLY41_19230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19235 PF04542 Sigma-70 region 2 LLY41_19235 PF08281 Sigma-70, region 4 LLY41_19245 PF00300 Histidine phosphatase superfamily (branch 1) LLY41_19250 PF10502 Signal peptidase, peptidase S26 LLY41_19270 PF01740 STAS domain LLY41_19275 PF00375 Sodium:dicarboxylate symporter family LLY41_19280 PF08279 HTH domain LLY41_19280 PF00072 Response regulator receiver domain LLY41_19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19285 PF17203 Single cache domain 3 LLY41_19285 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LLY41_19295 PF10672 S-adenosylmethionine-dependent methyltransferase LLY41_19295 PF17785 PUA-like domain LLY41_19310 PF01266 FAD dependent oxidoreductase LLY41_19315 PF02754 Cysteine-rich domain LLY41_19315 PF13183 4Fe-4S dicluster domain LLY41_19325 PF00392 Bacterial regulatory proteins, gntR family LLY41_19325 PF07729 FCD domain LLY41_19335 PF16868 NMT1-like family LLY41_19340 PF00583 Acetyltransferase (GNAT) family LLY41_19345 PF03594 Benzoate membrane transport protein LLY41_19355 PF17932 Tetracyclin repressor-like, C-terminal domain LLY41_19355 PF00440 Bacterial regulatory proteins, tetR family LLY41_19360 PF01740 STAS domain LLY41_19380 PF00873 AcrB/AcrD/AcrF family LLY41_19395 PF13411 MerR HTH family regulatory protein LLY41_19395 PF07739 TipAS antibiotic-recognition domain LLY41_19420 PF13193 AMP-binding enzyme C-terminal domain LLY41_19420 PF00501 AMP-binding enzyme LLY41_19425 PF04439 Streptomycin adenylyltransferase LLY41_19430 PF00860 Permease family LLY41_19435 PF08876 Domain of unknown function (DUF1836) LLY41_19440 PF01435 Peptidase family M48 LLY41_19445 PF01934 Protein of unknown function DUF86 LLY41_19450 PF04070 Domain of unknown function (DUF378) LLY41_19460 PF01740 STAS domain LLY41_19465 PF00209 Sodium:neurotransmitter symporter family LLY41_19470 PF03301 Tryptophan 2,3-dioxygenase LLY41_19475 PF04199 Putative cyclase LLY41_19480 PF00266 Aminotransferase class-V LLY41_19485 PF08359 YsiA-like protein, C-terminal region LLY41_19485 PF00440 Bacterial regulatory proteins, tetR family LLY41_19495 PF00293 NUDIX domain LLY41_19495 PF13344 Haloacid dehalogenase-like hydrolase LLY41_19500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLY41_19505 PF03449 Transcription elongation factor, N-terminal LLY41_19505 PF01272 Transcription elongation factor, GreA/GreB, C-term LLY41_19520 PF07690 Major Facilitator Superfamily LLY41_19525 PF06445 GyrI-like small molecule binding domain LLY41_19525 PF13411 MerR HTH family regulatory protein LLY41_19530 PF00313 'Cold-shock' DNA-binding domain LLY41_19535 PF02687 FtsX-like permease family LLY41_19540 PF00005 ABC transporter LLY41_19545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19550 PF00072 Response regulator receiver domain LLY41_19550 PF00486 Transcriptional regulatory protein, C terminal LLY41_19555 PF01996 F420-0:Gamma-glutamyl ligase LLY41_19555 PF00881 Nitroreductase family LLY41_19565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LLY41_19565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LLY41_19570 PF02805 Metal binding domain of Ada LLY41_19570 PF12833 Helix-turn-helix domain LLY41_19575 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain LLY41_19575 PF00730 HhH-GPD superfamily base excision DNA repair protein LLY41_19580 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LLY41_19590 PF04143 Sulphur transport LLY41_19595 PF01522 Polysaccharide deacetylase LLY41_19620 PF00072 Response regulator receiver domain LLY41_19620 PF00486 Transcriptional regulatory protein, C terminal LLY41_19625 PF00512 His Kinase A (phospho-acceptor) domain LLY41_19625 PF00989 PAS fold LLY41_19625 PF16736 Single Cache-like LLY41_19625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19635 PF03845 Spore germination protein LLY41_19640 PF05504 Spore germination B3/ GerAC like, C-terminal LLY41_19680 PF06280 Fn3-like domain LLY41_19680 PF00746 LPXTG cell wall anchor motif LLY41_19680 PF02225 PA domain LLY41_19680 PF00082 Subtilase family LLY41_19700 PF03413 Peptidase propeptide and YPEB domain LLY41_19710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LLY41_19715 PF12679 ABC-2 family transporter protein LLY41_19720 PF00005 ABC transporter LLY41_19735 PF02342 TerD domain LLY41_19755 PF13460 NAD(P)H-binding LLY41_19770 PF01740 STAS domain LLY41_19770 PF00916 Sulfate permease family LLY41_19790 PF00583 Acetyltransferase (GNAT) family LLY41_19800 PF00588 SpoU rRNA Methylase family LLY41_19810 PF07690 Major Facilitator Superfamily LLY41_19815 PF13538 UvrD-like helicase C-terminal domain LLY41_19820 PF00561 alpha/beta hydrolase fold LLY41_19845 PF03551 Transcriptional regulator PadR-like family LLY41_19850 PF05163 DinB family LLY41_19855 PF00583 Acetyltransferase (GNAT) family LLY41_19875 PF13344 Haloacid dehalogenase-like hydrolase LLY41_19875 PF00293 NUDIX domain LLY41_19895 PF08402 TOBE domain LLY41_19895 PF00005 ABC transporter LLY41_19900 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_19905 PF13416 Bacterial extracellular solute-binding protein LLY41_19910 PF00753 Metallo-beta-lactamase superfamily LLY41_19910 PF00581 Rhodanese-like domain LLY41_19915 PF13686 DsrE/DsrF/DrsH-like family LLY41_19920 PF00581 Rhodanese-like domain LLY41_19920 PF01206 Sulfurtransferase TusA LLY41_19925 PF02683 Cytochrome C biogenesis protein transmembrane region LLY41_19930 PF00072 Response regulator receiver domain LLY41_19930 PF00486 Transcriptional regulatory protein, C terminal LLY41_19935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_19935 PF00512 His Kinase A (phospho-acceptor) domain LLY41_19950 PF00578 AhpC/TSA family LLY41_19960 PF03990 G5-linked-Ubiquitin-like domain LLY41_19960 PF07501 G5 domain LLY41_19960 PF06725 3D domain LLY41_19965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLY41_19990 PF00583 Acetyltransferase (GNAT) family LLY41_19995 PF00005 ABC transporter LLY41_20005 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_20030 PF00375 Sodium:dicarboxylate symporter family LLY41_20040 PF03060 Nitronate monooxygenase LLY41_20065 PF08281 Sigma-70, region 4 LLY41_20065 PF04542 Sigma-70 region 2 LLY41_20090 PF13673 Acetyltransferase (GNAT) domain LLY41_20090 PF04229 GrpB protein LLY41_20100 PF03129 Anticodon binding domain LLY41_20100 PF09180 Prolyl-tRNA synthetase, C-terminal LLY41_20100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LLY41_20105 PF00873 AcrB/AcrD/AcrF family LLY41_20110 PF00440 Bacterial regulatory proteins, tetR family LLY41_20125 PF00990 Diguanylate cyclase, GGDEF domain LLY41_20125 PF00072 Response regulator receiver domain LLY41_20130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LLY41_20145 PF14602 Hexapeptide repeat of succinyl-transferase LLY41_20145 PF12464 Maltose acetyltransferase LLY41_20170 PF12833 Helix-turn-helix domain LLY41_20170 PF00072 Response regulator receiver domain LLY41_20175 PF02743 Cache domain LLY41_20175 PF00672 HAMP domain LLY41_20175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_20175 PF06580 Histidine kinase LLY41_20180 PF13407 Periplasmic binding protein domain LLY41_20185 PF02653 Branched-chain amino acid transport system / permease component LLY41_20195 PF13407 Periplasmic binding protein domain LLY41_20200 PF03741 Integral membrane protein TerC family LLY41_20210 PF05139 Erythromycin esterase LLY41_20220 PF01380 SIS domain LLY41_20220 PF01418 Helix-turn-helix domain, rpiR family LLY41_20225 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LLY41_20230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LLY41_20230 PF00367 phosphotransferase system, EIIB LLY41_20230 PF02378 Phosphotransferase system, EIIC LLY41_20250 PF06150 ChaB LLY41_20255 PF01037 Lrp/AsnC ligand binding domain LLY41_20260 PF00892 EamA-like transporter family LLY41_20270 PF07486 Cell Wall Hydrolase LLY41_20320 PF03960 ArsC family LLY41_20325 PF00583 Acetyltransferase (GNAT) family LLY41_20335 PF00005 ABC transporter LLY41_20360 PF00144 Beta-lactamase LLY41_20375 PF08713 DNA alkylation repair enzyme LLY41_20405 PF05360 yiaA/B two helix domain LLY41_20415 PF01047 MarR family LLY41_20420 PF00881 Nitroreductase family LLY41_20450 PF07561 Domain of Unknown Function (DUF1540) LLY41_20455 PF13302 Acetyltransferase (GNAT) domain LLY41_20460 PF00563 EAL domain LLY41_20460 PF12792 CSS motif domain associated with EAL LLY41_20470 PF12704 MacB-like periplasmic core domain LLY41_20470 PF02687 FtsX-like permease family LLY41_20475 PF00005 ABC transporter LLY41_20480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLY41_20485 PF04893 Yip1 domain LLY41_20515 PF00899 ThiF family LLY41_20520 PF05690 Thiazole biosynthesis protein ThiG LLY41_20525 PF02597 ThiS family LLY41_20525 PF05690 Thiazole biosynthesis protein ThiG LLY41_20530 PF01266 FAD dependent oxidoreductase LLY41_20535 PF02581 Thiamine monophosphate synthase LLY41_20555 PF00202 Aminotransferase class-III LLY41_20560 PF01546 Peptidase family M20/M25/M40 LLY41_20560 PF07687 Peptidase dimerisation domain LLY41_20570 PF01144 Coenzyme A transferase LLY41_20575 PF00202 Aminotransferase class-III LLY41_20590 PF00005 ABC transporter LLY41_20595 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_20600 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLY41_20645 PF16916 Dimerisation domain of Zinc Transporter LLY41_20645 PF01545 Cation efflux family LLY41_20665 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLY41_20670 PF09125 Cytochrome C oxidase subunit II, transmembrane LLY41_20670 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LLY41_20820 PF01638 HxlR-like helix-turn-helix LLY41_20825 PF07690 Major Facilitator Superfamily LLY41_20845 PF13426 PAS domain LLY41_20845 PF13188 PAS domain LLY41_20845 PF00989 PAS fold LLY41_20845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_20845 PF00512 His Kinase A (phospho-acceptor) domain LLY41_20850 PF03831 PhnA domain LLY41_20850 PF08274 PhnA Zinc-Ribbon LLY41_20855 PF00578 AhpC/TSA family LLY41_20860 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_20860 PF13192 Thioredoxin domain LLY41_20865 PF02056 Family 4 glycosyl hydrolase LLY41_20865 PF11975 Family 4 glycosyl hydrolase C-terminal domain LLY41_20870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LLY41_20870 PF00367 phosphotransferase system, EIIB LLY41_20870 PF02378 Phosphotransferase system, EIIC LLY41_20875 PF01418 Helix-turn-helix domain, rpiR family LLY41_20875 PF01380 SIS domain LLY41_20885 PF00664 ABC transporter transmembrane region LLY41_20885 PF00005 ABC transporter LLY41_20895 PF01261 Xylose isomerase-like TIM barrel LLY41_20910 PF00501 AMP-binding enzyme LLY41_20910 PF13193 AMP-binding enzyme C-terminal domain LLY41_20915 PF06276 Ferric iron reductase FhuF-like transporter LLY41_20915 PF04183 IucA / IucC family LLY41_20920 PF06276 Ferric iron reductase FhuF-like transporter LLY41_20920 PF04183 IucA / IucC family LLY41_20930 PF12833 Helix-turn-helix domain LLY41_20935 PF01032 FecCD transport family LLY41_20940 PF01032 FecCD transport family LLY41_20945 PF03992 Antibiotic biosynthesis monooxygenase LLY41_20955 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_20960 PF00005 ABC transporter LLY41_20965 PF01497 Periplasmic binding protein LLY41_20970 PF01032 FecCD transport family LLY41_20975 PF01032 FecCD transport family LLY41_20980 PF05067 Manganese containing catalase LLY41_20985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_20985 PF00005 ABC transporter LLY41_20995 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_21000 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_21000 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_21015 PF06940 Domain of unknown function (DUF1287) LLY41_21020 PF03070 TENA/THI-4/PQQC family LLY41_21035 PF01070 FMN-dependent dehydrogenase LLY41_21055 PF03741 Integral membrane protein TerC family LLY41_21080 PF00551 Formyl transferase LLY41_21080 PF01842 ACT domain LLY41_21085 PF07690 Major Facilitator Superfamily LLY41_21095 PF13840 ACT domain LLY41_21095 PF00696 Amino acid kinase family LLY41_21100 PF00990 Diguanylate cyclase, GGDEF domain LLY41_21100 PF00072 Response regulator receiver domain LLY41_21105 PF01739 CheR methyltransferase, SAM binding domain LLY41_21105 PF03705 CheR methyltransferase, all-alpha domain LLY41_21110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_21110 PF00512 His Kinase A (phospho-acceptor) domain LLY41_21110 PF09308 LuxQ, periplasmic LLY41_21110 PF00072 Response regulator receiver domain LLY41_21115 PF00350 Dynamin family LLY41_21120 PF07690 Major Facilitator Superfamily LLY41_21125 PF00749 tRNA synthetases class I (E and Q), catalytic domain LLY41_21125 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LLY41_21140 PF03009 Glycerophosphoryl diester phosphodiesterase family LLY41_21150 PF05099 Tellurite resistance protein TerB LLY41_21155 PF00753 Metallo-beta-lactamase superfamily LLY41_21170 PF00892 EamA-like transporter family LLY41_21175 PF04389 Peptidase family M28 LLY41_21175 PF02225 PA domain LLY41_21180 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLY41_21185 PF12728 Helix-turn-helix domain LLY41_21190 PF13426 PAS domain LLY41_21190 PF13188 PAS domain LLY41_21190 PF00989 PAS fold LLY41_21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_21190 PF00512 His Kinase A (phospho-acceptor) domain LLY41_21195 PF05816 Toxic anion resistance protein (TelA) LLY41_21200 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein LLY41_21215 PF13188 PAS domain LLY41_21215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLY41_21215 PF00512 His Kinase A (phospho-acceptor) domain LLY41_21215 PF00989 PAS fold LLY41_21215 PF13426 PAS domain LLY41_21220 PF13847 Methyltransferase domain LLY41_21220 PF05958 tRNA (Uracil-5-)-methyltransferase LLY41_21220 PF01938 TRAM domain LLY41_21230 PF17922 Tetracyclin repressor-like, C-terminal domain LLY41_21230 PF00440 Bacterial regulatory proteins, tetR family LLY41_21245 PF02660 Glycerol-3-phosphate acyltransferase LLY41_21250 PF04239 Protein of unknown function (DUF421) LLY41_21255 PF13426 PAS domain LLY41_21255 PF01740 STAS domain LLY41_21260 PF00149 Calcineurin-like phosphoesterase LLY41_21265 PF02833 DHHA2 domain LLY41_21265 PF01368 DHH family LLY41_21270 PF03060 Nitronate monooxygenase LLY41_21280 PF02637 GatB domain LLY41_21280 PF02934 GatB/GatE catalytic domain LLY41_21285 PF01425 Amidase LLY41_21290 PF02686 Glu-tRNAGln amidotransferase C subunit LLY41_21295 PF07997 Protein of unknown function (DUF1694) LLY41_21300 PF00463 Isocitrate lyase family LLY41_21310 PF00474 Sodium:solute symporter family LLY41_21315 PF00857 Isochorismatase family LLY41_21320 PF00171 Aldehyde dehydrogenase family LLY41_21325 PF07537 CamS sex pheromone cAM373 precursor LLY41_21330 PF01653 NAD-dependent DNA ligase adenylation domain LLY41_21330 PF00533 BRCA1 C Terminus (BRCT) domain LLY41_21330 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LLY41_21330 PF12826 Helix-hairpin-helix motif LLY41_21330 PF03120 NAD-dependent DNA ligase OB-fold domain LLY41_21335 PF00580 UvrD/REP helicase N-terminal domain LLY41_21335 PF13361 UvrD-like helicase C-terminal domain LLY41_21340 PF01884 PcrB family LLY41_21345 PF01371 Trp repressor protein LLY41_21360 PF11127 Protein of unknown function (DUF2892) LLY41_21365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LLY41_21365 PF02843 Phosphoribosylglycinamide synthetase, C domain LLY41_21365 PF02844 Phosphoribosylglycinamide synthetase, N domain LLY41_21370 PF01808 AICARFT/IMPCHase bienzyme LLY41_21370 PF02142 MGS-like domain LLY41_21375 PF00551 Formyl transferase LLY41_21380 PF02769 AIR synthase related protein, C-terminal domain LLY41_21380 PF00586 AIR synthase related protein, N-terminal domain LLY41_21385 PF00156 Phosphoribosyl transferase domain LLY41_21390 PF02769 AIR synthase related protein, C-terminal domain LLY41_21390 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LLY41_21390 PF00586 AIR synthase related protein, N-terminal domain LLY41_21405 PF01259 SAICAR synthetase LLY41_21410 PF10397 Adenylosuccinate lyase C-terminus LLY41_21410 PF00206 Lyase LLY41_21420 PF00731 AIR carboxylase LLY41_21430 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LLY41_21450 PF02378 Phosphotransferase system, EIIC LLY41_21450 PF00367 phosphotransferase system, EIIB LLY41_21450 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LLY41_21455 PF00874 PRD domain LLY41_21455 PF03123 CAT RNA binding domain LLY41_21460 PF00860 Permease family LLY41_21465 PF00958 GMP synthase C terminal domain LLY41_21465 PF00117 Glutamine amidotransferase class-I LLY41_21465 PF02540 NAD synthase LLY41_21470 PF13559 Domain of unknown function (DUF4129) LLY41_21470 PF11992 Domain of unknown function (DUF3488) LLY41_21470 PF01841 Transglutaminase-like superfamily LLY41_21475 PF01882 Protein of unknown function DUF58 LLY41_21480 PF07726 ATPase family associated with various cellular activities (AAA) LLY41_21480 PF17863 AAA lid domain LLY41_21500 PF17353 Family of unknown function (DUF5381) LLY41_21505 PF17353 Family of unknown function (DUF5381) LLY41_21525 PF17353 Family of unknown function (DUF5381) LLY41_21575 PF01580 FtsK/SpoIIIE family LLY41_21575 PF12538 DNA transporter LLY41_21585 PF08817 WXG100 protein secretion system (Wss), protein YukD LLY41_21590 PF06013 Proteins of 100 residues with WXG LLY41_21600 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LLY41_21610 PF00571 CBS domain LLY41_21610 PF00005 ABC transporter LLY41_21645 PF14449 Pre-toxin TG LLY41_21645 PF04740 LXG domain of WXG superfamily LLY41_21690 PF00111 2Fe-2S iron-sulfur cluster binding domain LLY41_21690 PF00970 Oxidoreductase FAD-binding domain LLY41_21690 PF00175 Oxidoreductase NAD-binding domain LLY41_21700 PF08818 Domain of unknown function (DU1801) LLY41_21705 PF01022 Bacterial regulatory protein, arsR family LLY41_21710 PF00118 TCP-1/cpn60 chaperonin family LLY41_21715 PF00166 Chaperonin 10 Kd subunit LLY41_21720 PF02517 CPBP intramembrane metalloprotease LLY41_21730 PF02629 CoA binding domain LLY41_21730 PF06971 Putative DNA-binding protein N-terminus LLY41_21735 PF01967 MoaC family LLY41_21740 PF16326 ABC transporter C-terminal domain LLY41_21740 PF12848 ABC transporter LLY41_21740 PF00005 ABC transporter LLY41_21745 PF00814 Glycoprotease family LLY41_21750 PF00583 Acetyltransferase (GNAT) family LLY41_21755 PF00814 Glycoprotease family LLY41_21760 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LLY41_21855 PF10263 SprT-like family LLY41_21865 PF00575 S1 RNA binding domain LLY41_21865 PF16921 Tex protein YqgF-like domain LLY41_21865 PF09371 Tex-like protein N-terminal domain LLY41_21865 PF17674 HHH domain LLY41_21870 PF07228 Stage II sporulation protein E (SpoIIE) LLY41_21875 PF04545 Sigma-70, region 4 LLY41_21875 PF04539 Sigma-70 region 3 LLY41_21875 PF04542 Sigma-70 region 2 LLY41_21880 PF13581 Histidine kinase-like ATPase domain LLY41_21885 PF01740 STAS domain LLY41_21890 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain LLY41_21890 PF07228 Stage II sporulation protein E (SpoIIE) LLY41_21895 PF13581 Histidine kinase-like ATPase domain LLY41_21900 PF01740 STAS domain LLY41_21905 PF01740 STAS domain LLY41_21905 PF08678 Rsbr N terminal LLY41_21910 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LLY41_21915 PF01402 Ribbon-helix-helix protein, copG family LLY41_21920 PF00842 Alanine racemase, C-terminal domain LLY41_21920 PF01168 Alanine racemase, N-terminal domain LLY41_21930 PF01648 4'-phosphopantetheinyl transferase superfamily LLY41_21935 PF01694 Rhomboid family LLY41_21940 PF03703 Bacterial PH domain LLY41_21945 PF03703 Bacterial PH domain LLY41_21950 PF03851 UV-endonuclease UvdE LLY41_21955 PF00271 Helicase conserved C-terminal domain LLY41_21955 PF00270 DEAD/DEAH box helicase LLY41_21960 PF12146 Serine aminopeptidase, S33 LLY41_21965 PF02875 Mur ligase family, glutamate ligase domain LLY41_21965 PF08245 Mur ligase middle domain LLY41_21965 PF01225 Mur ligase family, catalytic domain LLY41_21970 PF07478 D-ala D-ala ligase C-terminus LLY41_21970 PF01820 D-ala D-ala ligase N-terminus LLY41_21980 PF00582 Universal stress protein family LLY41_21985 PF01740 STAS domain LLY41_21985 PF00916 Sulfate permease family LLY41_21990 PF12681 Glyoxalase-like domain LLY41_22005 PF01923 Cobalamin adenosyltransferase LLY41_22020 PF02654 Cobalamin-5-phosphate synthase LLY41_22025 PF07685 CobB/CobQ-like glutamine amidotransferase domain LLY41_22030 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LLY41_22035 PF00155 Aminotransferase class I and II LLY41_22040 PF03186 CobD/Cbib protein LLY41_22045 PF00005 ABC transporter LLY41_22050 PF01032 FecCD transport family LLY41_22055 PF01497 Periplasmic binding protein LLY41_22065 PF01098 Cell cycle protein LLY41_22070 PF00750 tRNA synthetases class I (R) LLY41_22070 PF05746 DALR anticodon binding domain LLY41_22070 PF03485 Arginyl tRNA synthetase N terminal domain LLY41_22080 PF00210 Ferritin-like domain LLY41_22095 PF08892 YqcI/YcgG family LLY41_22105 PF00005 ABC transporter LLY41_22105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_22110 PF00877 NlpC/P60 family LLY41_22115 PF13378 Enolase C-terminal domain-like LLY41_22115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLY41_22120 PF02016 LD-carboxypeptidase N-terminal domain LLY41_22120 PF17676 LD-carboxypeptidase C-terminal domain LLY41_22125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLY41_22130 PF00005 ABC transporter LLY41_22130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLY41_22135 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_22135 PF12911 N-terminal TM domain of oligopeptide transport permease C LLY41_22140 PF00528 Binding-protein-dependent transport system inner membrane component LLY41_22145 PF04951 D-aminopeptidase LLY41_22155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LLY41_22155 PF02272 DHHA1 domain LLY41_22155 PF01411 tRNA synthetases class II (A) LLY41_22180 PF07690 Major Facilitator Superfamily LLY41_22185 PF00873 AcrB/AcrD/AcrF family LLY41_22190 PF00440 Bacterial regulatory proteins, tetR family LLY41_22195 PF01596 O-methyltransferase LLY41_22200 PF01497 Periplasmic binding protein LLY41_22205 PF00005 ABC transporter LLY41_22210 PF01032 FecCD transport family LLY41_22230 PF01380 SIS domain LLY41_22235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LLY41_22235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LLY41_22235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LLY41_22235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LLY41_22240 PF07949 YbbR-like protein LLY41_22250 PF13490 Putative zinc-finger LLY41_22255 PF04542 Sigma-70 region 2 LLY41_22255 PF08281 Sigma-70, region 4 LLY41_22265 PF00491 Arginase family